============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done.pdb ============================================================================= Atom's 547 OP2 residue renamed to RU3 Atom's 546 OP1 residue renamed to RU3 Atom's 545 C6 residue renamed to RU3 Atom's 544 C5 residue renamed to RU3 Atom's 543 O4 residue renamed to RU3 Atom's 542 C4 residue renamed to RU3 Atom's 541 N3 residue renamed to RU3 Atom's 540 O2 residue renamed to RU3 Atom's 539 C2 residue renamed to RU3 Atom's 538 N1 residue renamed to RU3 Atom's 537 C01 residue renamed to RU3 Atom's 536 C1' residue renamed to RU3 Atom's 535 C2' residue renamed to RU3 Atom's 534 C3' residue renamed to RU3 Atom's 533 O4' residue renamed to RU3 Atom's 532 C4' residue renamed to RU3 Atom's 531 O5' residue renamed to RU3 Atom's 530 C5' residue renamed to RU3 Atom's 529 P residue renamed to RU3 Error: recognition of atom ATOM 23 OP3 A A 1 ... failed. Atom erased. Error: recognition of atom ATOM 518 C01 U A 25 ... failed. Atom erased. Error: recognition of atom ATOM 537 C01 RU3 A 26 ... failed. Atom erased. Missing atom added: ATOM 23 H5'1 A A 1 10.454 15.412 23.635 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 1 9.307 15.284 22.184 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 1 8.502 16.906 23.296 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 1 9.492 17.274 20.445 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 1 9.569 20.196 22.797 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 1 8.484 19.464 20.448 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 1 6.980 18.500 22.312 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 1 12.315 18.021 21.703 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 1 14.616 21.041 18.589 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 1 14.211 22.579 17.967 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 1 9.958 24.020 19.511 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 2 5.728 18.547 20.025 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 2 4.902 17.739 18.576 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 2 4.732 20.025 18.463 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 2 6.551 18.758 16.372 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 2 7.212 22.269 17.656 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 2 6.668 20.955 15.321 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 2 4.411 21.366 16.511 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 2 8.879 18.966 18.140 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 2 13.134 19.968 15.927 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 2 13.684 21.315 15.034 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 2 10.260 24.593 14.579 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 3 4.078 20.916 14.093 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 3 3.489 19.917 12.647 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 3 4.338 21.998 12.040 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 3 6.076 19.670 11.184 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 3 7.605 23.061 12.084 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 3 7.403 21.335 9.958 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 3 5.214 22.723 10.012 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 3 7.394 19.836 13.505 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 3 11.857 18.272 13.806 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 3 12.713 19.442 12.895 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 3 9.302 18.102 14.341 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 4 5.507 21.757 7.774 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 4 5.186 20.587 6.374 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 4 6.809 22.119 5.838 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 4 7.783 19.262 6.125 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 4 10.050 22.235 6.947 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 4 9.926 20.081 5.246 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 4 8.482 21.961 4.207 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 4 8.383 19.646 9.013 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 4 15.224 18.970 8.788 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 4 14.407 21.282 6.068 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 4 15.417 20.099 6.683 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 5 9.159 20.312 2.513 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 5 8.862 18.953 1.287 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 5 11.039 19.702 1.244 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 5 10.682 16.892 2.329 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 5 13.513 19.158 3.568 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 5 13.134 16.745 2.302 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 5 12.955 18.579 0.487 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 5 10.450 17.949 4.814 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 5 11.557 15.344 8.613 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 5 13.261 15.241 8.495 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 5 9.836 16.550 7.060 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 6 13.442 16.355 -0.540 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 6 13.047 14.831 -1.517 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 6 15.227 14.823 -0.823 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 6 13.439 12.753 0.522 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 6 16.464 14.284 2.316 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 6 15.522 11.838 1.471 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 6 16.624 12.969 -0.586 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 6 12.934 14.536 2.488 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 6 15.318 12.137 6.464 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 6 11.614 14.048 4.525 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 7 16.434 10.507 -0.967 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 7 15.746 8.957 -1.713 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 7 17.498 8.522 -0.277 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 7 14.790 7.587 0.730 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 7 17.551 8.699 3.143 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 7 16.045 6.486 2.539 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 7 18.005 6.548 0.841 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 7 14.296 10.144 2.117 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 7 14.367 7.834 8.597 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 7 17.348 6.406 7.053 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 7 16.125 6.284 8.188 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 8 17.020 4.271 1.057 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 8 16.079 2.796 0.445 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 8 16.991 2.431 2.519 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 8 13.965 2.605 2.504 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 8 16.004 3.723 5.551 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 8 14.095 1.881 4.849 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 8 16.380 0.885 4.134 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 8 14.160 5.272 2.972 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 8 10.563 7.481 5.135 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 8 10.663 6.871 6.731 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 8 12.056 6.969 3.046 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 9 14.693 -0.920 4.327 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 9 13.526 -2.216 3.703 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 9 13.612 -2.190 5.992 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 9 10.980 -1.260 4.802 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 9 12.256 0.105 8.145 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 9 10.131 -1.291 7.115 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 9 12.031 -3.008 7.500 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 9 11.888 1.602 4.780 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 9 7.409 4.070 9.372 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 9 8.771 1.051 10.914 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 9 7.497 2.121 10.735 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 10 9.904 -4.220 7.402 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 10 8.603 -5.297 6.637 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 10 8.008 -4.640 8.745 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 10 6.340 -3.450 6.501 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 10 6.901 -1.534 9.746 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 10 4.863 -2.585 8.258 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 10 5.847 -4.524 9.668 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 10 8.073 -1.155 6.224 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 10 5.863 3.118 5.205 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 10 4.753 4.077 6.080 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 10 3.569 2.029 10.213 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 11 3.504 -5.047 8.857 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 11 2.264 -5.986 7.849 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 11 1.306 -4.452 9.326 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 11 1.014 -3.676 6.422 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 11 1.349 -1.017 9.162 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 11 -0.427 -1.855 7.235 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 11 -0.756 -3.400 9.291 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 11 3.341 -2.351 6.572 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 11 4.166 1.264 3.607 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 11 3.098 2.465 4.195 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 11 4.582 -1.183 4.478 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 12 -2.757 -3.429 7.809 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 12 -3.942 -4.185 6.600 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 12 -4.617 -2.094 7.269 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 12 -3.760 -2.283 4.372 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 12 -3.291 0.943 6.385 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 12 -4.601 0.016 4.156 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 12 -6.058 -0.625 6.199 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 12 -1.207 -1.603 5.173 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 12 1.687 0.508 2.053 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 12 0.959 2.046 1.874 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 12 0.953 -1.532 3.542 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 13 -7.437 -0.608 4.149 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 13 -8.399 -1.369 2.761 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 13 -8.467 0.908 2.654 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 13 -6.909 -0.445 0.426 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 13 -6.003 3.066 1.670 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 13 -6.818 1.789 -0.614 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 13 -8.946 2.230 0.793 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 13 -4.642 -0.183 1.954 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 13 -2.045 3.185 -1.082 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 13 -2.361 -0.807 1.180 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 14 -9.596 1.850 -1.576 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 14 -10.262 0.901 -3.022 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 14 -9.544 2.995 -3.636 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 14 -7.854 0.711 -4.706 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 14 -6.312 4.107 -3.943 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 14 -6.705 2.432 -6.048 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 14 -8.917 3.760 -5.732 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 14 -6.106 0.724 -2.402 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 14 -1.391 -0.217 -3.397 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 14 -0.229 0.612 -4.335 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 14 -2.053 4.510 -6.346 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 15 -8.791 2.831 -8.028 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 15 -9.218 1.679 -9.414 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 15 -7.687 3.272 -10.058 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 15 -6.626 0.448 -9.970 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 15 -4.359 3.438 -9.221 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 15 -4.595 1.375 -11.007 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 15 -6.205 3.251 -11.805 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 15 -5.757 0.728 -7.115 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 15 1.000 0.093 -8.229 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 15 -0.137 2.545 -10.687 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 15 0.939 1.335 -10.263 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 16 -5.632 1.723 -13.660 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 16 -5.954 0.384 -14.901 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 16 -3.845 1.225 -15.151 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 16 -4.010 -1.640 -14.167 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 16 -1.103 0.619 -13.159 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 16 -1.573 -1.720 -14.489 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 16 -2.006 0.198 -16.177 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 16 -4.028 -0.799 -11.352 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 16 -1.587 -3.786 -8.300 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 16 0.060 -4.227 -8.205 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 16 2.622 -2.189 -11.646 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 17 -1.566 -2.011 -17.331 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 17 -2.042 -3.493 -18.337 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 17 0.200 -3.484 -17.836 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 17 -1.395 -5.662 -16.451 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 17 1.714 -4.121 -14.819 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 17 0.788 -6.540 -15.720 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 17 1.671 -5.272 -17.803 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 17 -1.792 -3.998 -14.362 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 17 0.946 -6.575 -10.752 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 17 -2.949 -4.675 -12.281 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 18 1.563 -7.719 -18.259 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 18 0.884 -9.267 -19.015 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 18 2.753 -9.674 -17.733 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 18 0.185 -10.804 -16.607 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 18 3.023 -9.644 -14.306 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 18 1.619 -11.916 -14.941 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 18 3.465 -11.655 -16.737 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 18 -0.366 -8.324 -15.021 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 18 0.249 -11.033 -8.734 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 18 3.193 -12.208 -10.570 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 18 2.063 -12.464 -9.362 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 19 2.694 -13.989 -16.621 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 19 1.806 -15.502 -17.218 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 19 2.916 -15.902 -15.256 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 19 -0.102 -15.970 -15.061 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 19 2.055 -14.882 -12.087 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 19 0.243 -16.813 -12.776 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 19 2.535 -17.588 -13.687 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 19 -0.075 -13.309 -14.442 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 19 -1.820 -13.615 -9.531 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 19 -2.084 -12.002 -13.837 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 20 1.030 -19.555 -13.492 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 20 -0.105 -20.891 -14.095 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 20 0.142 -20.952 -11.809 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 20 -2.614 -20.148 -12.773 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 20 -1.216 -18.786 -9.493 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 20 -3.315 -20.291 -10.427 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 20 -1.295 -21.888 -10.190 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 20 -1.934 -17.304 -12.837 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 20 -5.498 -14.207 -11.457 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 20 -6.310 -13.983 -9.971 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 20 -4.840 -17.074 -6.686 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 21 -3.372 -23.179 -10.180 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 21 -4.637 -24.337 -10.881 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 21 -5.147 -23.671 -8.728 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 21 -7.017 -22.607 -10.853 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 21 -6.284 -20.595 -7.679 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 21 -8.387 -21.772 -8.990 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 21 -7.217 -23.638 -7.638 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 21 -5.434 -20.421 -11.111 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 21 -8.687 -16.766 -9.306 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 21 -5.932 -18.473 -12.566 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 22 -9.513 -24.329 -8.134 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 22 -10.847 -25.283 -8.997 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 22 -11.694 -23.846 -7.405 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 22 -12.374 -23.114 -10.252 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 22 -11.942 -20.419 -7.563 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 22 -13.851 -21.401 -9.285 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 22 -13.843 -22.950 -7.215 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 22 -10.109 -21.571 -10.352 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 22 -12.326 -16.864 -10.774 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 22 -9.456 -20.140 -12.274 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 23 -15.970 -23.235 -8.319 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 23 -17.241 -24.066 -9.383 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 23 -17.983 -22.050 -8.531 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 23 -17.568 -22.068 -11.518 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 23 -17.012 -18.875 -9.484 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 23 -18.586 -19.836 -11.511 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 23 -19.666 -20.632 -9.302 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 23 -14.992 -21.246 -11.109 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 23 -12.736 -18.849 -14.516 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 23 -13.551 -17.344 -14.507 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 23 -13.105 -20.969 -13.060 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 24 -21.340 -20.645 -11.059 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 24 -22.476 -21.413 -12.305 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 24 -22.677 -19.124 -12.268 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 24 -21.481 -20.268 -14.796 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 24 -20.477 -16.795 -13.514 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 24 -21.638 -17.989 -15.703 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 24 -23.499 -17.691 -13.943 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 24 -18.980 -19.978 -13.658 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 24 -17.062 -16.345 -16.868 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 24 -16.844 -20.452 -14.818 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 25 -24.553 -17.885 -16.037 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 25 -25.483 -18.708 -17.412 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 25 -24.947 -16.554 -17.960 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 25 -23.537 -18.688 -19.581 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 25 -21.883 -15.307 -18.865 1.00 0.00 H Missing atom added: ATOM 11 O2' U A 25 -23.837 -15.397 -20.194 1.00 0.00 O Missing atom added: ATOM 25 H2' U A 25 -22.721 -16.851 -20.990 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 25 -24.758 -15.536 -19.961 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 25 -21.468 -18.638 -17.793 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 25 -17.686 -16.619 -20.765 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 25 -19.342 -19.896 -17.994 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RU3 A 26 -25.556 -16.146 -22.280 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RU3 A 26 -26.256 -17.178 -23.650 1.00 0.00 H Missing atom added: ATOM 23 H4' RU3 A 26 -25.179 -15.395 -24.521 1.00 0.00 H Missing atom added: ATOM 9 O3' RU3 A 26 -25.261 -17.246 -26.235 1.00 0.00 O Missing atom added: ATOM 24 H3' RU3 A 26 -23.913 -18.109 -25.064 1.00 0.00 H Missing atom added: ATOM 27 H1' RU3 A 26 -21.823 -14.895 -24.843 1.00 0.00 H Missing atom added: ATOM 11 O2' RU3 A 26 -23.366 -15.174 -26.600 1.00 0.00 O Missing atom added: ATOM 25 H2' RU3 A 26 -22.430 -16.940 -26.624 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RU3 A 26 -24.324 -15.108 -26.609 1.00 0.00 H Missing atom added: ATOM 29 H6 RU3 A 26 -22.342 -17.814 -22.919 1.00 0.00 H Missing atom added: ATOM 30 H3 RU3 A 26 -17.610 -17.078 -24.979 1.00 0.00 H Missing atom added: ATOM 28 H5 RU3 A 26 -20.502 -19.284 -22.156 1.00 0.00 H Missing atom added: ATOM 31 H3T RU3 A 26 -25.793 -18.088 -26.326 1.00 0.00 H Missing atom added: ATOM 22 OP3 A A 1 12.779 13.629 22.600 1.00 72.08 A O1- Number of atoms: 826 Number of residues: 26 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 888 Number of angles built: 1590 Number of dihedrals built: 2419 Number of impropers built: 172 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- Atom's 552 OP2 residue renamed to RU3 Atom's 551 OP1 residue renamed to RU3 Atom's 550 C6 residue renamed to RU3 Atom's 549 C5 residue renamed to RU3 Atom's 548 O4 residue renamed to RU3 Atom's 547 C4 residue renamed to RU3 Atom's 546 N3 residue renamed to RU3 Atom's 545 O2 residue renamed to RU3 Atom's 544 C2 residue renamed to RU3 Atom's 543 N1 residue renamed to RU3 Atom's 542 C01 residue renamed to RU3 Atom's 541 C1' residue renamed to RU3 Atom's 540 C2' residue renamed to RU3 Atom's 539 C3' residue renamed to RU3 Atom's 538 O4' residue renamed to RU3 Atom's 537 C4' residue renamed to RU3 Atom's 536 O5' residue renamed to RU3 Atom's 535 C5' residue renamed to RU3 Atom's 534 P residue renamed to RU3 Error: recognition of atom ATOM 570 OP3 A B 1 ... failed. Atom erased. Error: recognition of atom ATOM 1070 C01 U B 25 ... failed. Atom erased. Error: recognition of atom ATOM 1089 C01 RU3 B 26 ... failed. Atom erased. Missing atom added: ATOM 23 H5'1 A B 1 -13.356 -9.732 -23.768 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 1 -13.304 -8.842 -22.143 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 1 -15.376 -8.975 -22.532 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 1 -14.143 -10.224 -20.052 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 1 -17.287 -11.697 -21.487 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 1 -16.397 -10.563 -19.226 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 1 -16.996 -8.626 -20.842 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 1 -13.793 -12.839 -21.681 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 1 -13.948 -16.591 -18.514 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 1 -15.155 -17.144 -17.439 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 1 -18.978 -14.319 -17.534 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 2 -16.837 -7.828 -18.349 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 2 -16.073 -6.848 -16.975 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 2 -17.978 -7.943 -16.279 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 2 -15.392 -8.973 -15.078 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 2 -18.359 -11.296 -15.648 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 2 -16.806 -10.343 -13.614 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 2 -18.600 -8.537 -14.111 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 2 -15.055 -10.959 -17.289 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 2 -15.557 -16.584 -13.350 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 2 -18.389 -14.497 -12.388 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 2 -17.250 -15.650 -11.971 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 3 -17.646 -8.320 -11.853 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 3 -16.659 -7.487 -10.524 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 3 -17.781 -9.335 -9.731 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 3 -14.775 -9.598 -9.776 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 3 -17.027 -12.652 -10.273 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 3 -15.113 -11.710 -8.555 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 3 -17.363 -10.627 -7.852 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 3 -14.776 -10.751 -12.527 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 3 -11.365 -14.219 -13.233 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 3 -11.121 -15.752 -12.521 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 3 -14.386 -16.671 -9.188 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 4 -15.865 -10.550 -6.010 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 4 -14.732 -9.752 -4.778 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 4 -15.022 -12.003 -4.354 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 4 -12.246 -11.221 -5.256 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 4 -13.674 -14.658 -6.094 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 4 -11.589 -13.530 -4.734 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 4 -13.645 -13.475 -3.159 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 4 -12.916 -11.619 -8.104 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 4 -9.276 -13.474 -10.845 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 4 -8.460 -14.974 -10.807 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 4 -9.991 -17.715 -7.233 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 5 -11.558 -13.280 -1.895 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 5 -10.335 -12.392 -0.822 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 5 -9.784 -14.616 -1.130 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 5 -7.914 -12.655 -2.497 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 5 -8.564 -16.140 -3.953 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 5 -6.499 -14.610 -2.981 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 5 -7.696 -15.648 -0.933 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 5 -9.439 -12.795 -4.717 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 5 -6.075 -15.144 -7.941 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 5 -8.909 -11.682 -6.861 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 6 -5.452 -14.949 -0.259 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 6 -4.174 -13.891 0.568 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 6 -3.237 -15.706 -0.507 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 6 -2.605 -13.028 -1.782 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 6 -2.866 -16.205 -3.886 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 6 -1.051 -14.259 -3.222 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 6 -1.053 -15.990 -1.295 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 6 -4.944 -13.130 -3.517 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 6 -4.376 -11.374 -8.081 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 6 -3.396 -11.875 -9.387 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 6 -0.685 -15.597 -8.203 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 7 1.016 -14.690 -1.292 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 7 2.219 -13.455 -0.611 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 7 3.009 -14.603 -2.481 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 7 2.450 -11.682 -2.992 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 7 1.986 -14.305 -5.754 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 7 3.474 -12.058 -5.204 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 7 4.649 -14.037 -4.012 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 7 -0.072 -12.312 -3.704 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 7 -2.468 -9.492 -6.677 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 7 -1.668 -9.772 -8.165 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 7 -2.010 -10.516 -4.307 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 8 6.261 -12.193 -4.310 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 8 7.304 -10.755 -3.782 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 8 7.559 -11.192 -6.018 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 8 6.138 -8.588 -5.366 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 8 5.347 -10.528 -8.559 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 8 6.304 -8.085 -7.766 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 8 8.299 -9.738 -7.700 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 8 3.483 -9.884 -5.403 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 8 -0.159 -7.188 -7.278 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 8 -0.435 -6.557 -8.841 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 8 3.156 -7.562 -11.785 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 9 9.118 -7.384 -7.832 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 9 9.911 -5.846 -7.171 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 9 9.332 -5.634 -9.392 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 9 7.682 -3.933 -7.494 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 9 6.194 -5.275 -10.743 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 9 6.737 -2.889 -9.509 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 9 8.942 -3.685 -10.621 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 9 5.914 -5.953 -7.282 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 9 1.793 -3.711 -9.584 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 9 3.785 -5.824 -6.011 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 10 8.970 -1.198 -10.158 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 10 9.526 0.338 -9.281 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 10 8.043 0.779 -11.011 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 10 6.936 1.318 -8.254 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 10 4.661 0.168 -11.119 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 10 4.998 2.304 -9.424 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 10 6.690 2.613 -11.369 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 10 5.996 -1.240 -8.174 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 10 2.245 -2.265 -5.467 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 10 0.972 -1.479 -6.299 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 10 4.787 -2.402 -6.031 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 11 6.230 4.786 -10.233 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 11 6.626 6.230 -9.141 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 11 4.566 6.464 -10.084 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 11 4.566 6.005 -7.080 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 11 1.663 4.825 -9.292 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 11 2.162 6.525 -7.177 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 11 2.815 7.801 -9.340 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 11 4.344 3.311 -7.552 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 11 -0.443 2.572 -5.600 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 11 4.053 1.606 -5.768 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 12 2.417 9.448 -7.504 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 12 2.896 10.644 -6.172 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 12 0.617 10.407 -6.335 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 12 1.833 9.258 -3.802 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 12 -1.303 7.747 -5.353 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 12 -0.492 8.946 -3.046 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 12 -1.000 10.848 -4.740 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 12 2.237 6.655 -4.987 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 12 1.499 2.863 -1.941 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 12 0.103 2.297 -1.135 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 12 -3.657 5.070 -1.961 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 13 -1.084 11.713 -2.420 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 13 -0.470 12.661 -0.952 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 13 -2.519 11.667 -0.573 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 13 -0.251 10.503 1.038 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 13 -3.197 8.335 -0.079 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 13 -2.001 9.213 2.209 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 13 -3.553 11.132 1.401 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 13 0.375 8.486 -1.060 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 13 -1.176 2.946 2.702 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 13 -4.024 5.174 3.102 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 13 -3.048 3.968 3.729 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 14 -3.052 11.314 3.803 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 14 -2.271 12.078 5.299 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 14 -3.645 10.358 5.889 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 14 -0.696 9.918 6.392 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 14 -3.038 6.988 5.592 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 14 -1.390 7.881 7.595 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 14 -3.639 9.129 7.872 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 14 -0.358 8.631 3.651 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 14 1.370 2.363 5.892 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 14 -1.602 3.278 7.831 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 14 -0.160 2.435 7.737 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 15 -2.338 9.164 10.025 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 15 -1.322 9.969 11.350 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 15 -1.724 7.778 11.839 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 15 1.168 8.450 11.182 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 15 -0.294 4.993 10.440 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 15 1.688 6.158 11.919 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 15 -0.491 6.394 13.288 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 15 0.640 7.849 8.574 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 15 3.694 3.649 8.086 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 15 2.345 7.850 6.772 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 16 1.548 6.642 14.747 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 16 2.757 7.573 15.800 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 16 3.215 5.299 15.681 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 16 5.255 7.044 14.319 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 16 4.461 3.509 13.034 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 16 6.553 4.954 14.046 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 16 5.155 4.152 16.076 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 16 3.866 6.817 12.005 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 16 6.157 7.288 7.879 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 16 7.080 5.848 7.812 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 16 4.489 8.129 9.705 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 17 7.418 4.698 16.799 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 17 8.755 5.700 17.599 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 17 9.579 3.751 16.721 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 17 10.518 6.277 15.356 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 17 10.133 2.989 13.419 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 17 12.064 4.814 14.110 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 17 11.764 3.234 16.143 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 17 8.247 6.168 13.376 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 17 12.011 5.158 7.717 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 17 13.289 2.742 10.159 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 17 13.580 3.720 8.833 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 18 13.967 4.363 16.210 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 18 15.215 5.565 16.871 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 18 16.106 4.301 15.192 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 18 15.739 7.241 14.537 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 18 15.540 4.554 11.817 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 18 17.014 6.769 12.490 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 18 17.966 4.790 13.864 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 18 13.285 6.635 13.534 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 18 11.386 9.449 10.243 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 18 12.362 9.127 8.874 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 18 11.491 8.466 12.651 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 19 19.684 6.660 13.753 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 19 20.654 8.107 14.385 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 19 21.211 7.645 12.228 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 19 19.705 10.259 12.656 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 19 19.406 8.293 9.393 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 19 20.230 10.741 10.299 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 19 22.202 9.105 10.680 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 19 17.130 9.018 12.262 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 19 13.805 11.708 9.854 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 19 13.750 12.297 8.252 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 19 17.680 11.186 5.833 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 20 23.047 11.444 10.682 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 20 23.706 13.005 11.430 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 20 23.537 13.155 9.144 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 20 21.617 14.915 10.687 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 20 20.688 13.491 7.260 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 20 21.047 15.909 8.513 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 20 23.393 15.082 7.815 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 20 19.541 12.851 10.731 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 20 14.824 15.944 6.790 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 20 17.955 16.273 4.943 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 20 16.440 16.882 5.312 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 21 23.399 17.574 8.211 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 21 23.831 19.119 9.138 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 21 22.700 19.562 7.184 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 21 21.151 20.186 9.706 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 21 19.356 19.061 6.515 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 21 19.479 21.200 8.224 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 21 21.466 21.450 6.587 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 21 20.160 17.680 9.663 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 21 16.026 16.796 11.778 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 21 14.908 17.586 10.750 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 21 18.612 16.602 11.616 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 22 20.986 23.698 7.616 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 22 21.239 25.123 8.772 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 22 19.398 25.416 7.419 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 22 18.781 25.043 10.345 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 22 16.355 23.802 7.672 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 22 16.462 25.570 9.769 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 22 17.510 26.758 7.725 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 22 18.606 22.065 10.049 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 22 11.941 21.361 11.595 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 22 12.066 24.098 9.173 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 22 11.311 23.378 10.481 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 23 16.730 28.445 9.419 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 23 16.968 29.721 10.741 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 23 14.736 29.388 10.208 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 23 15.509 28.491 12.972 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 23 12.786 26.642 11.037 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 23 13.128 28.074 13.350 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 23 12.796 29.793 11.450 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 23 16.148 26.015 11.935 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 23 12.524 23.233 14.445 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 23 16.895 24.090 13.308 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 24 12.207 30.783 13.653 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 24 12.485 31.885 15.116 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 24 10.509 30.703 15.258 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 24 12.576 29.952 17.301 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 24 10.164 27.317 15.953 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 24 10.863 28.533 18.314 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 24 9.209 30.112 17.121 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 24 13.575 28.066 15.527 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 24 12.462 23.786 18.292 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 24 15.432 26.493 16.047 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 25 9.147 30.566 19.465 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 25 9.518 31.532 21.002 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 25 8.308 29.660 21.485 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 25 11.122 29.708 22.566 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 25 9.413 26.406 21.594 1.00 0.00 H Missing atom added: ATOM 11 O2' U B 25 8.578 27.673 23.378 1.00 0.00 O Missing atom added: ATOM 25 H2' U B 25 10.534 27.668 23.789 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 25 8.060 28.481 23.390 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 25 11.975 28.421 20.252 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 25 13.399 23.811 22.204 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 25 14.265 27.640 19.805 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RU3 B 26 8.698 29.046 25.921 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RU3 B 26 9.366 30.046 27.331 1.00 0.00 H Missing atom added: ATOM 23 H4' RU3 B 26 9.039 27.959 28.041 1.00 0.00 H Missing atom added: ATOM 9 O3' RU3 B 26 10.766 29.127 29.486 1.00 0.00 O Missing atom added: ATOM 24 H3' RU3 B 26 11.933 28.912 27.896 1.00 0.00 H Missing atom added: ATOM 27 H1' RU3 B 26 10.985 25.213 27.490 1.00 0.00 H Missing atom added: ATOM 11 O2' RU3 B 26 10.661 26.288 29.555 1.00 0.00 O Missing atom added: ATOM 25 H2' RU3 B 26 12.520 26.874 29.112 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RU3 B 26 9.988 26.911 29.838 1.00 0.00 H Missing atom added: ATOM 29 H6 RU3 B 26 12.156 27.839 25.441 1.00 0.00 H Missing atom added: ATOM 30 H3 RU3 B 26 15.338 23.782 26.216 1.00 0.00 H Missing atom added: ATOM 28 H5 RU3 B 26 14.189 27.665 24.027 1.00 0.00 H Missing atom added: ATOM 31 H3T RU3 B 26 11.035 30.081 29.616 1.00 0.00 H Missing atom added: ATOM 569 OP3 A B 1 -10.416 -10.117 -23.724 1.00 64.52 B O1- Number of atoms: 832 Number of residues: 26 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 896 Number of angles built: 1603 Number of dihedrals built: 2439 Number of impropers built: 175 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 1368676 Number of van der Waals pairs: 193286 Number of H-bonds built: 59 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 24 Number of molecules (chains) read: 2 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 7612.8319 kcal/mol (7589.7454 without restraints) Performing minimization step: 2. Total energy = 7587.4747 kcal/mol (7564.4147 without restraints) Performing minimization step: 3. Total energy = 7562.2709 kcal/mol (7539.2372 without restraints) Performing minimization step: 4. Total energy = 7537.2180 kcal/mol (7514.2103 without restraints) Performing minimization step: 5. Total energy = 7512.3136 kcal/mol (7489.3317 without restraints) Performing minimization step: 6. Total energy = 7487.5554 kcal/mol (7464.5992 without restraints) Performing minimization step: 7. Total energy = 7462.9414 kcal/mol (7440.0105 without restraints) Performing minimization step: 8. Total energy = 7438.4692 kcal/mol (7415.5635 without restraints) Performing minimization step: 9. Total energy = 7414.1370 kcal/mol (7391.2564 without restraints) Performing minimization step: 10. Total energy = 7389.9418 kcal/mol (7367.0860 without restraints) Performing minimization step: 11. Total energy = 7365.8831 kcal/mol (7343.0519 without restraints) Performing minimization step: 12. Total energy = 7341.9583 kcal/mol (7319.1516 without restraints) Performing minimization step: 13. Total energy = 7318.1656 kcal/mol (7295.3832 without restraints) Performing minimization step: 14. Total energy = 7294.5035 kcal/mol (7271.7451 without restraints) Performing minimization step: 15. Total energy = 7270.9694 kcal/mol (7248.2351 without restraints) Performing minimization step: 16. Total energy = 7247.5619 kcal/mol (7224.8513 without restraints) Performing minimization step: 17. Total energy = 7224.2792 kcal/mol (7201.5923 without restraints) Performing minimization step: 18. Total energy = 7201.1198 kcal/mol (7178.4564 without restraints) Performing minimization step: 19. Total energy = 7178.0820 kcal/mol (7155.4418 without restraints) Performing minimization step: 20. Total energy = 7155.1641 kcal/mol (7132.5472 without restraints) Performing minimization step: 21. Total energy = 7132.3648 kcal/mol (7109.7710 without restraints) Performing minimization step: 22. Total energy = 7109.6826 kcal/mol (7087.1118 without restraints) Performing minimization step: 23. Total energy = 7087.1159 kcal/mol (7064.5678 without restraints) Performing minimization step: 24. Total energy = 7064.6632 kcal/mol (7042.1378 without restraints) Performing minimization step: 25. Total energy = 7042.3231 kcal/mol (7019.8203 without restraints) Performing minimization step: 26. Total energy = 7020.0943 kcal/mol (6997.6139 without restraints) Performing minimization step: 27. Total energy = 6997.9757 kcal/mol (6975.5178 without restraints) Performing minimization step: 28. Total energy = 6975.9655 kcal/mol (6953.5296 without restraints) Performing minimization step: 29. Total energy = 6954.0622 kcal/mol (6931.6484 without restraints) Performing minimization step: 30. Total energy = 6932.2653 kcal/mol (6909.8736 without restraints) Performing minimization step: 31. Total energy = 6910.5728 kcal/mol (6888.2029 without restraints) Performing minimization step: 32. Total energy = 6888.9841 kcal/mol (6866.6360 without restraints) Performing minimization step: 33. Total energy = 6867.4977 kcal/mol (6845.1713 without restraints) Performing minimization step: 34. Total energy = 6846.1127 kcal/mol (6823.8079 without restraints) Performing minimization step: 35. Total energy = 6824.8276 kcal/mol (6802.5443 without restraints) Performing minimization step: 36. Total energy = 6803.6409 kcal/mol (6781.3790 without restraints) Performing minimization step: 37. Total energy = 6782.5526 kcal/mol (6760.3120 without restraints) Performing minimization step: 38. Total energy = 6761.5611 kcal/mol (6739.3416 without restraints) Performing minimization step: 39. Total energy = 6740.6653 kcal/mol (6718.4670 without restraints) Performing minimization step: 40. Total energy = 6719.8640 kcal/mol (6697.6867 without restraints) Performing minimization step: 41. Total energy = 6699.1566 kcal/mol (6677.0003 without restraints) Performing minimization step: 42. Total energy = 6678.5422 kcal/mol (6656.4068 without restraints) Performing minimization step: 43. Total energy = 6658.0193 kcal/mol (6635.9046 without restraints) Performing minimization step: 44. Total energy = 6637.5874 kcal/mol (6615.4934 without restraints) Performing minimization step: 45. Total energy = 6617.2451 kcal/mol (6595.1718 without restraints) Performing minimization step: 46. Total energy = 6596.9918 kcal/mol (6574.9391 without restraints) Performing minimization step: 47. Total energy = 6576.8271 kcal/mol (6554.7951 without restraints) Performing minimization step: 48. Total energy = 6556.7493 kcal/mol (6534.7375 without restraints) Performing minimization step: 49. Total energy = 6536.7576 kcal/mol (6514.7662 without restraints) Performing minimization step: 50. Total energy = 6516.8514 kcal/mol (6494.8803 without restraints) Performing minimization step: 51. Total energy = 6497.0299 kcal/mol (6475.0791 without restraints) Performing minimization step: 52. Total energy = 6477.2923 kcal/mol (6455.3616 without restraints) Performing minimization step: 53. Total energy = 6457.6379 kcal/mol (6435.7273 without restraints) Performing minimization step: 54. Total energy = 6438.0656 kcal/mol (6416.1750 without restraints) Performing minimization step: 55. Total energy = 6418.5748 kcal/mol (6396.7043 without restraints) Performing minimization step: 56. Total energy = 6399.1651 kcal/mol (6377.3145 without restraints) Performing minimization step: 57. Total energy = 6379.8353 kcal/mol (6358.0045 without restraints) Performing minimization step: 58. Total energy = 6360.5845 kcal/mol (6338.7735 without restraints) Performing minimization step: 59. Total energy = 6341.4122 kcal/mol (6319.6209 without restraints) Performing minimization step: 60. Total energy = 6322.3180 kcal/mol (6300.5465 without restraints) Performing minimization step: 61. Total energy = 6303.3007 kcal/mol (6281.5488 without restraints) Performing minimization step: 62. Total energy = 6284.3599 kcal/mol (6262.6276 without restraints) Performing minimization step: 63. Total energy = 6265.4951 kcal/mol (6243.7823 without restraints) Performing minimization step: 64. Total energy = 6246.7056 kcal/mol (6225.0123 without restraints) Performing minimization step: 65. Total energy = 6227.9904 kcal/mol (6206.3166 without restraints) Performing minimization step: 66. Total energy = 6209.3494 kcal/mol (6187.6950 without restraints) Performing minimization step: 67. Total energy = 6190.7816 kcal/mol (6169.1464 without restraints) Performing minimization step: 68. Total energy = 6172.2863 kcal/mol (6150.6706 without restraints) Performing minimization step: 69. Total energy = 6153.8631 kcal/mol (6132.2665 without restraints) Performing minimization step: 70. Total energy = 6135.5119 kcal/mol (6113.9346 without restraints) Performing minimization step: 71. Total energy = 6117.2317 kcal/mol (6095.6736 without restraints) Performing minimization step: 72. Total energy = 6099.0217 kcal/mol (6077.4827 without restraints) Performing minimization step: 73. Total energy = 6080.8814 kcal/mol (6059.3614 without restraints) Performing minimization step: 74. Total energy = 6062.8105 kcal/mol (6041.3095 without restraints) Performing minimization step: 75. Total energy = 6044.8082 kcal/mol (6023.3263 without restraints) Performing minimization step: 76. Total energy = 6026.8744 kcal/mol (6005.4116 without restraints) Performing minimization step: 77. Total energy = 6009.0083 kcal/mol (5987.5643 without restraints) Performing minimization step: 78. Total energy = 5991.2093 kcal/mol (5969.7842 without restraints) Performing minimization step: 79. Total energy = 5973.4769 kcal/mol (5952.0707 without restraints) Performing minimization step: 80. Total energy = 5955.8109 kcal/mol (5934.4236 without restraints) Performing minimization step: 81. Total energy = 5938.2106 kcal/mol (5916.8420 without restraints) Performing minimization step: 82. Total energy = 5920.6756 kcal/mol (5899.3257 without restraints) Performing minimization step: 83. Total energy = 5903.2051 kcal/mol (5881.8739 without restraints) Performing minimization step: 84. Total energy = 5885.7989 kcal/mol (5864.4864 without restraints) Performing minimization step: 85. Total energy = 5868.4565 kcal/mol (5847.1627 without restraints) Performing minimization step: 86. Total energy = 5851.1775 kcal/mol (5829.9023 without restraints) Performing minimization step: 87. Total energy = 5833.9615 kcal/mol (5812.7049 without restraints) Performing minimization step: 88. Total energy = 5816.8076 kcal/mol (5795.5695 without restraints) Performing minimization step: 89. Total energy = 5799.7165 kcal/mol (5778.4969 without restraints) Performing minimization step: 90. Total energy = 5782.6869 kcal/mol (5761.4858 without restraints) Performing minimization step: 91. Total energy = 5765.7183 kcal/mol (5744.5357 without restraints) Performing minimization step: 92. Total energy = 5748.8104 kcal/mol (5727.6462 without restraints) Performing minimization step: 93. Total energy = 5731.9624 kcal/mol (5710.8166 without restraints) Performing minimization step: 94. Total energy = 5715.1748 kcal/mol (5694.0474 without restraints) Performing minimization step: 95. Total energy = 5698.4471 kcal/mol (5677.3381 without restraints) Performing minimization step: 96. Total energy = 5681.7787 kcal/mol (5660.6880 without restraints) Performing minimization step: 97. Total energy = 5665.1692 kcal/mol (5644.0967 without restraints) Performing minimization step: 98. Total energy = 5648.6181 kcal/mol (5627.5639 without restraints) Performing minimization step: 99. Total energy = 5632.1252 kcal/mol (5611.0893 without restraints) Performing minimization step: 100. Total energy = 5615.6901 kcal/mol (5594.6723 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 101. Total energy = 5599.3124 kcal/mol (5578.3128 without restraints) Performing minimization step: 102. Total energy = 5582.9917 kcal/mol (5562.0103 without restraints) Performing minimization step: 103. Total energy = 5566.7278 kcal/mol (5545.7645 without restraints) Performing minimization step: 104. Total energy = 5550.5206 kcal/mol (5529.5754 without restraints) Performing minimization step: 105. Total energy = 5534.3691 kcal/mol (5513.4420 without restraints) Performing minimization step: 106. Total energy = 5518.2733 kcal/mol (5497.3643 without restraints) Performing minimization step: 107. Total energy = 5502.2327 kcal/mol (5481.3416 without restraints) Performing minimization step: 108. Total energy = 5486.2471 kcal/mol (5465.3741 without restraints) Performing minimization step: 109. Total energy = 5470.3164 kcal/mol (5449.4614 without restraints) Performing minimization step: 110. Total energy = 5454.4403 kcal/mol (5433.6032 without restraints) Performing minimization step: 111. Total energy = 5438.6184 kcal/mol (5417.7993 without restraints) Performing minimization step: 112. Total energy = 5422.8501 kcal/mol (5402.0489 without restraints) Performing minimization step: 113. Total energy = 5407.1353 kcal/mol (5386.3520 without restraints) Performing minimization step: 114. Total energy = 5391.4739 kcal/mol (5370.7084 without restraints) Performing minimization step: 115. Total energy = 5375.8652 kcal/mol (5355.1177 without restraints) Performing minimization step: 116. Total energy = 5360.3094 kcal/mol (5339.5798 without restraints) Performing minimization step: 117. Total energy = 5344.8057 kcal/mol (5324.0937 without restraints) Performing minimization step: 118. Total energy = 5329.3542 kcal/mol (5308.6600 without restraints) Performing minimization step: 119. Total energy = 5313.9547 kcal/mol (5293.2783 without restraints) Performing minimization step: 120. Total energy = 5298.6065 kcal/mol (5277.9479 without restraints) Performing minimization step: 121. Total energy = 5283.3093 kcal/mol (5262.6685 without restraints) Performing minimization step: 122. Total energy = 5268.0634 kcal/mol (5247.4402 without restraints) Performing minimization step: 123. Total energy = 5252.8682 kcal/mol (5232.2628 without restraints) Performing minimization step: 124. Total energy = 5237.7235 kcal/mol (5217.1357 without restraints) Performing minimization step: 125. Total energy = 5222.6290 kcal/mol (5202.0588 without restraints) Performing minimization step: 126. Total energy = 5207.5845 kcal/mol (5187.0320 without restraints) Performing minimization step: 127. Total energy = 5192.5898 kcal/mol (5172.0550 without restraints) Performing minimization step: 128. Total energy = 5177.6446 kcal/mol (5157.1273 without restraints) Performing minimization step: 129. Total energy = 5162.7484 kcal/mol (5142.2486 without restraints) Performing minimization step: 130. Total energy = 5147.9012 kcal/mol (5127.4191 without restraints) Performing minimization step: 131. Total energy = 5133.1029 kcal/mol (5112.6383 without restraints) Performing minimization step: 132. Total energy = 5118.3528 kcal/mol (5097.9057 without restraints) Performing minimization step: 133. Total energy = 5103.6515 kcal/mol (5083.2219 without restraints) Performing minimization step: 134. Total energy = 5088.9978 kcal/mol (5068.5857 without restraints) Performing minimization step: 135. Total energy = 5074.3924 kcal/mol (5053.9978 without restraints) Performing minimization step: 136. Total energy = 5059.8345 kcal/mol (5039.4573 without restraints) Performing minimization step: 137. Total energy = 5045.3239 kcal/mol (5024.9642 without restraints) Performing minimization step: 138. Total energy = 5030.8606 kcal/mol (5010.5182 without restraints) Performing minimization step: 139. Total energy = 5016.4442 kcal/mol (4996.1193 without restraints) Performing minimization step: 140. Total energy = 5002.0746 kcal/mol (4981.7670 without restraints) Performing minimization step: 141. Total energy = 4987.7520 kcal/mol (4967.4619 without restraints) Performing minimization step: 142. Total energy = 4973.4753 kcal/mol (4953.2025 without restraints) Performing minimization step: 143. Total energy = 4959.2448 kcal/mol (4938.9893 without restraints) Performing minimization step: 144. Total energy = 4945.0605 kcal/mol (4924.8224 without restraints) Performing minimization step: 145. Total energy = 4930.9217 kcal/mol (4910.7009 without restraints) Performing minimization step: 146. Total energy = 4916.8284 kcal/mol (4896.6249 without restraints) Performing minimization step: 147. Total energy = 4902.7803 kcal/mol (4882.5939 without restraints) Performing minimization step: 148. Total energy = 4888.7777 kcal/mol (4868.6087 without restraints) Performing minimization step: 149. Total energy = 4874.8202 kcal/mol (4854.6684 without restraints) Performing minimization step: 150. Total energy = 4860.9072 kcal/mol (4840.7726 without restraints) Performing minimization step: 151. Total energy = 4847.0389 kcal/mol (4826.9215 without restraints) Performing minimization step: 152. Total energy = 4833.2149 kcal/mol (4813.1147 without restraints) Performing minimization step: 153. Total energy = 4819.4353 kcal/mol (4799.3523 without restraints) Performing minimization step: 154. Total energy = 4805.6999 kcal/mol (4785.6340 without restraints) Performing minimization step: 155. Total energy = 4792.0082 kcal/mol (4771.9594 without restraints) Performing minimization step: 156. Total energy = 4778.3601 kcal/mol (4758.3285 without restraints) Performing minimization step: 157. Total energy = 4764.7556 kcal/mol (4744.7411 without restraints) Performing minimization step: 158. Total energy = 4751.1945 kcal/mol (4731.1970 without restraints) Performing minimization step: 159. Total energy = 4737.6769 kcal/mol (4717.6965 without restraints) Performing minimization step: 160. Total energy = 4724.2022 kcal/mol (4704.2389 without restraints) Performing minimization step: 161. Total energy = 4710.7701 kcal/mol (4690.8239 without restraints) Performing minimization step: 162. Total energy = 4697.3812 kcal/mol (4677.4520 without restraints) Performing minimization step: 163. Total energy = 4684.0341 kcal/mol (4664.1218 without restraints) Performing minimization step: 164. Total energy = 4670.7296 kcal/mol (4650.8344 without restraints) Performing minimization step: 165. Total energy = 4657.4674 kcal/mol (4637.5892 without restraints) Performing minimization step: 166. Total energy = 4644.2472 kcal/mol (4624.3860 without restraints) Performing minimization step: 167. Total energy = 4631.0691 kcal/mol (4611.2249 without restraints) Performing minimization step: 168. Total energy = 4617.9327 kcal/mol (4598.1054 without restraints) Performing minimization step: 169. Total energy = 4604.8376 kcal/mol (4585.0271 without restraints) Performing minimization step: 170. Total energy = 4591.7839 kcal/mol (4571.9904 without restraints) Performing minimization step: 171. Total energy = 4578.7718 kcal/mol (4558.9952 without restraints) Performing minimization step: 172. Total energy = 4565.8008 kcal/mol (4546.0411 without restraints) Performing minimization step: 173. Total energy = 4552.8713 kcal/mol (4533.1285 without restraints) Performing minimization step: 174. Total energy = 4539.9822 kcal/mol (4520.2562 without restraints) Performing minimization step: 175. Total energy = 4527.1339 kcal/mol (4507.4248 without restraints) Performing minimization step: 176. Total energy = 4514.3259 kcal/mol (4494.6336 without restraints) Performing minimization step: 177. Total energy = 4501.5586 kcal/mol (4481.8831 without restraints) Performing minimization step: 178. Total energy = 4488.8316 kcal/mol (4469.1729 without restraints) Performing minimization step: 179. Total energy = 4476.1447 kcal/mol (4456.5028 without restraints) Performing minimization step: 180. Total energy = 4463.4979 kcal/mol (4443.8728 without restraints) Performing minimization step: 181. Total energy = 4450.8907 kcal/mol (4431.2823 without restraints) Performing minimization step: 182. Total energy = 4438.3234 kcal/mol (4418.7317 without restraints) Performing minimization step: 183. Total energy = 4425.7957 kcal/mol (4406.2207 without restraints) Performing minimization step: 184. Total energy = 4413.3076 kcal/mol (4393.7493 without restraints) Performing minimization step: 185. Total energy = 4400.8589 kcal/mol (4381.3174 without restraints) Performing minimization step: 186. Total energy = 4388.4497 kcal/mol (4368.9249 without restraints) Performing minimization step: 187. Total energy = 4376.0794 kcal/mol (4356.5712 without restraints) Performing minimization step: 188. Total energy = 4363.7483 kcal/mol (4344.2567 without restraints) Performing minimization step: 189. Total energy = 4351.4558 kcal/mol (4331.9809 without restraints) Performing minimization step: 190. Total energy = 4339.2021 kcal/mol (4319.7438 without restraints) Performing minimization step: 191. Total energy = 4326.9868 kcal/mol (4307.5451 without restraints) Performing minimization step: 192. Total energy = 4314.8105 kcal/mol (4295.3854 without restraints) Performing minimization step: 193. Total energy = 4302.6723 kcal/mol (4283.2638 without restraints) Performing minimization step: 194. Total energy = 4290.5722 kcal/mol (4271.1801 without restraints) Performing minimization step: 195. Total energy = 4278.5101 kcal/mol (4259.1347 without restraints) Performing minimization step: 196. Total energy = 4266.4862 kcal/mol (4247.1273 without restraints) Performing minimization step: 197. Total energy = 4254.5000 kcal/mol (4235.1577 without restraints) Performing minimization step: 198. Total energy = 4242.5522 kcal/mol (4223.2263 without restraints) Performing minimization step: 199. Total energy = 4230.6413 kcal/mol (4211.3317 without restraints) Performing minimization step: 200. Total energy = 4218.7681 kcal/mol (4199.4752 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 201. Total energy = 4206.9325 kcal/mol (4187.6561 without restraints) Performing minimization step: 202. Total energy = 4195.1345 kcal/mol (4175.8745 without restraints) Performing minimization step: 203. Total energy = 4183.3734 kcal/mol (4164.1299 without restraints) Performing minimization step: 204. Total energy = 4171.6493 kcal/mol (4152.4222 without restraints) Performing minimization step: 205. Total energy = 4159.9624 kcal/mol (4140.7517 without restraints) Performing minimization step: 206. Total energy = 4148.3124 kcal/mol (4129.1181 without restraints) Performing minimization step: 207. Total energy = 4136.6990 kcal/mol (4117.5210 without restraints) Performing minimization step: 208. Total energy = 4125.1229 kcal/mol (4105.9612 without restraints) Performing minimization step: 209. Total energy = 4113.5828 kcal/mol (4094.4376 without restraints) Performing minimization step: 210. Total energy = 4102.0793 kcal/mol (4082.9503 without restraints) Performing minimization step: 211. Total energy = 4090.6122 kcal/mol (4071.4996 without restraints) Performing minimization step: 212. Total energy = 4079.1810 kcal/mol (4060.0845 without restraints) Performing minimization step: 213. Total energy = 4067.7861 kcal/mol (4048.7060 without restraints) Performing minimization step: 214. Total energy = 4056.4273 kcal/mol (4037.3635 without restraints) Performing minimization step: 215. Total energy = 4045.1045 kcal/mol (4026.0569 without restraints) Performing minimization step: 216. Total energy = 4033.8175 kcal/mol (4014.7862 without restraints) Performing minimization step: 217. Total energy = 4022.5663 kcal/mol (4003.5512 without restraints) Performing minimization step: 218. Total energy = 4011.3506 kcal/mol (3992.3518 without restraints) Performing minimization step: 219. Total energy = 4000.1708 kcal/mol (3981.1881 without restraints) Performing minimization step: 220. Total energy = 3989.0266 kcal/mol (3970.0602 without restraints) Performing minimization step: 221. Total energy = 3977.9174 kcal/mol (3958.9670 without restraints) Performing minimization step: 222. Total energy = 3966.8432 kcal/mol (3947.9089 without restraints) Performing minimization step: 223. Total energy = 3955.8044 kcal/mol (3936.8865 without restraints) Performing minimization step: 224. Total energy = 3944.8008 kcal/mol (3925.8988 without restraints) Performing minimization step: 225. Total energy = 3933.8320 kcal/mol (3914.9462 without restraints) Performing minimization step: 226. Total energy = 3922.8982 kcal/mol (3904.0284 without restraints) Performing minimization step: 227. Total energy = 3911.9989 kcal/mol (3893.1452 without restraints) Performing minimization step: 228. Total energy = 3901.1344 kcal/mol (3882.2968 without restraints) Performing minimization step: 229. Total energy = 3890.3046 kcal/mol (3871.4830 without restraints) Performing minimization step: 230. Total energy = 3879.5094 kcal/mol (3860.7038 without restraints) Performing minimization step: 231. Total energy = 3868.7484 kcal/mol (3849.9587 without restraints) Performing minimization step: 232. Total energy = 3858.0218 kcal/mol (3839.2482 without restraints) Performing minimization step: 233. Total energy = 3847.3295 kcal/mol (3828.5718 without restraints) Performing minimization step: 234. Total energy = 3836.6713 kcal/mol (3817.9296 without restraints) Performing minimization step: 235. Total energy = 3826.0476 kcal/mol (3807.3221 without restraints) Performing minimization step: 236. Total energy = 3815.4577 kcal/mol (3796.7480 without restraints) Performing minimization step: 237. Total energy = 3804.9017 kcal/mol (3786.2079 without restraints) Performing minimization step: 238. Total energy = 3794.3793 kcal/mol (3775.7013 without restraints) Performing minimization step: 239. Total energy = 3783.8908 kcal/mol (3765.2288 without restraints) Performing minimization step: 240. Total energy = 3773.4359 kcal/mol (3754.7896 without restraints) Performing minimization step: 241. Total energy = 3763.0143 kcal/mol (3744.3839 without restraints) Performing minimization step: 242. Total energy = 3752.6258 kcal/mol (3734.0111 without restraints) Performing minimization step: 243. Total energy = 3742.2710 kcal/mol (3723.6722 without restraints) Performing minimization step: 244. Total energy = 3731.9495 kcal/mol (3713.3666 without restraints) Performing minimization step: 245. Total energy = 3721.6614 kcal/mol (3703.0942 without restraints) Performing minimization step: 246. Total energy = 3711.4063 kcal/mol (3692.8549 without restraints) Performing minimization step: 247. Total energy = 3701.1842 kcal/mol (3682.6485 without restraints) Performing minimization step: 248. Total energy = 3690.9951 kcal/mol (3672.4751 without restraints) Performing minimization step: 249. Total energy = 3680.8388 kcal/mol (3662.3346 without restraints) Performing minimization step: 250. Total energy = 3670.7154 kcal/mol (3652.2269 without restraints) Performing minimization step: 251. Total energy = 3660.6248 kcal/mol (3642.1520 without restraints) Performing minimization step: 252. Total energy = 3650.5676 kcal/mol (3632.1104 without restraints) Performing minimization step: 253. Total energy = 3640.5420 kcal/mol (3622.1006 without restraints) Performing minimization step: 254. Total energy = 3630.5490 kcal/mol (3612.1232 without restraints) Performing minimization step: 255. Total energy = 3620.5884 kcal/mol (3602.1781 without restraints) Performing minimization step: 256. Total energy = 3610.6598 kcal/mol (3592.2652 without restraints) Performing minimization step: 257. Total energy = 3600.7637 kcal/mol (3582.3846 without restraints) Performing minimization step: 258. Total energy = 3590.8996 kcal/mol (3572.5361 without restraints) Performing minimization step: 259. Total energy = 3581.0675 kcal/mol (3562.7196 without restraints) Performing minimization step: 260. Total energy = 3571.2679 kcal/mol (3552.9355 without restraints) Performing minimization step: 261. Total energy = 3561.5000 kcal/mol (3543.1831 without restraints) Performing minimization step: 262. Total energy = 3551.7638 kcal/mol (3533.4623 without restraints) Performing minimization step: 263. Total energy = 3542.0596 kcal/mol (3523.7737 without restraints) Performing minimization step: 264. Total energy = 3532.3868 kcal/mol (3514.1161 without restraints) Performing minimization step: 265. Total energy = 3522.7458 kcal/mol (3504.4908 without restraints) Performing minimization step: 266. Total energy = 3513.1364 kcal/mol (3494.8968 without restraints) Performing minimization step: 267. Total energy = 3503.5584 kcal/mol (3485.3343 without restraints) Performing minimization step: 268. Total energy = 3494.0119 kcal/mol (3475.8031 without restraints) Performing minimization step: 269. Total energy = 3484.4966 kcal/mol (3466.3033 without restraints) Performing minimization step: 270. Total energy = 3475.0127 kcal/mol (3456.8347 without restraints) Performing minimization step: 271. Total energy = 3465.5599 kcal/mol (3447.3972 without restraints) Performing minimization step: 272. Total energy = 3456.1382 kcal/mol (3437.9908 without restraints) Performing minimization step: 273. Total energy = 3446.7476 kcal/mol (3428.6155 without restraints) Performing minimization step: 274. Total energy = 3437.3879 kcal/mol (3419.2711 without restraints) Performing minimization step: 275. Total energy = 3428.0594 kcal/mol (3409.9579 without restraints) Performing minimization step: 276. Total energy = 3418.7616 kcal/mol (3400.6754 without restraints) Performing minimization step: 277. Total energy = 3409.4944 kcal/mol (3391.4234 without restraints) Performing minimization step: 278. Total energy = 3400.2579 kcal/mol (3382.2022 without restraints) Performing minimization step: 279. Total energy = 3391.0520 kcal/mol (3373.0115 without restraints) Performing minimization step: 280. Total energy = 3381.8766 kcal/mol (3363.8512 without restraints) Performing minimization step: 281. Total energy = 3372.7316 kcal/mol (3354.7214 without restraints) Performing minimization step: 282. Total energy = 3363.6170 kcal/mol (3345.6219 without restraints) Performing minimization step: 283. Total energy = 3354.5327 kcal/mol (3336.5528 without restraints) Performing minimization step: 284. Total energy = 3345.4787 kcal/mol (3327.5138 without restraints) Performing minimization step: 285. Total energy = 3336.4550 kcal/mol (3318.5052 without restraints) Performing minimization step: 286. Total energy = 3327.4612 kcal/mol (3309.5265 without restraints) Performing minimization step: 287. Total energy = 3318.4975 kcal/mol (3300.5778 without restraints) Performing minimization step: 288. Total energy = 3309.5638 kcal/mol (3291.6592 without restraints) Performing minimization step: 289. Total energy = 3300.6599 kcal/mol (3282.7703 without restraints) Performing minimization step: 290. Total energy = 3291.7857 kcal/mol (3273.9111 without restraints) Performing minimization step: 291. Total energy = 3282.9416 kcal/mol (3265.0820 without restraints) Performing minimization step: 292. Total energy = 3274.1271 kcal/mol (3256.2824 without restraints) Performing minimization step: 293. Total energy = 3265.3417 kcal/mol (3247.5120 without restraints) Performing minimization step: 294. Total energy = 3256.5861 kcal/mol (3238.7713 without restraints) Performing minimization step: 295. Total energy = 3247.8603 kcal/mol (3230.0604 without restraints) Performing minimization step: 296. Total energy = 3239.1638 kcal/mol (3221.3788 without restraints) Performing minimization step: 297. Total energy = 3230.4965 kcal/mol (3212.7263 without restraints) Performing minimization step: 298. Total energy = 3221.8586 kcal/mol (3204.1033 without restraints) Performing minimization step: 299. Total energy = 3213.2503 kcal/mol (3195.5098 without restraints) Performing minimization step: 300. Total energy = 3204.6708 kcal/mol (3186.9451 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 301. Total energy = 3196.1204 kcal/mol (3178.4095 without restraints) Performing minimization step: 302. Total energy = 3187.5993 kcal/mol (3169.9032 without restraints) Performing minimization step: 303. Total energy = 3179.1070 kcal/mol (3161.4256 without restraints) Performing minimization step: 304. Total energy = 3170.6435 kcal/mol (3152.9768 without restraints) Performing minimization step: 305. Total energy = 3162.2087 kcal/mol (3144.5566 without restraints) Performing minimization step: 306. Total energy = 3153.8026 kcal/mol (3136.1653 without restraints) Performing minimization step: 307. Total energy = 3145.4253 kcal/mol (3127.8027 without restraints) Performing minimization step: 308. Total energy = 3137.0767 kcal/mol (3119.4687 without restraints) Performing minimization step: 309. Total energy = 3128.7571 kcal/mol (3111.1640 without restraints) Performing minimization step: 310. Total energy = 3120.4661 kcal/mol (3102.8874 without restraints) Performing minimization step: 311. Total energy = 3112.2031 kcal/mol (3094.6391 without restraints) Performing minimization step: 312. Total energy = 3103.9685 kcal/mol (3086.4189 without restraints) Performing minimization step: 313. Total energy = 3095.7618 kcal/mol (3078.2268 without restraints) Performing minimization step: 314. Total energy = 3087.5835 kcal/mol (3070.0630 without restraints) Performing minimization step: 315. Total energy = 3079.4335 kcal/mol (3061.9275 without restraints) Performing minimization step: 316. Total energy = 3071.3113 kcal/mol (3053.8198 without restraints) Performing minimization step: 317. Total energy = 3063.2174 kcal/mol (3045.7403 without restraints) Performing minimization step: 318. Total energy = 3055.1512 kcal/mol (3037.6886 without restraints) Performing minimization step: 319. Total energy = 3047.1132 kcal/mol (3029.6650 without restraints) Performing minimization step: 320. Total energy = 3039.1030 kcal/mol (3021.6692 without restraints) Performing minimization step: 321. Total energy = 3031.1205 kcal/mol (3013.7010 without restraints) Performing minimization step: 322. Total energy = 3023.1656 kcal/mol (3005.7606 without restraints) Performing minimization step: 323. Total energy = 3015.2387 kcal/mol (2997.8479 without restraints) Performing minimization step: 324. Total energy = 3007.3393 kcal/mol (2989.9628 without restraints) Performing minimization step: 325. Total energy = 2999.4673 kcal/mol (2982.1052 without restraints) Performing minimization step: 326. Total energy = 2991.6230 kcal/mol (2974.2751 without restraints) Performing minimization step: 327. Total energy = 2983.8059 kcal/mol (2966.4723 without restraints) Performing minimization step: 328. Total energy = 2976.0163 kcal/mol (2958.6969 without restraints) Performing minimization step: 329. Total energy = 2968.2540 kcal/mol (2950.9488 without restraints) Performing minimization step: 330. Total energy = 2960.5188 kcal/mol (2943.2278 without restraints) Performing minimization step: 331. Total energy = 2952.8108 kcal/mol (2935.5339 without restraints) Performing minimization step: 332. Total energy = 2945.1299 kcal/mol (2927.8671 without restraints) Performing minimization step: 333. Total energy = 2937.4759 kcal/mol (2920.2273 without restraints) Performing minimization step: 334. Total energy = 2929.8492 kcal/mol (2912.6147 without restraints) Performing minimization step: 335. Total energy = 2922.2493 kcal/mol (2905.0289 without restraints) Performing minimization step: 336. Total energy = 2914.6761 kcal/mol (2897.4697 without restraints) Performing minimization step: 337. Total energy = 2907.1296 kcal/mol (2889.9373 without restraints) Performing minimization step: 338. Total energy = 2899.6101 kcal/mol (2882.4318 without restraints) Performing minimization step: 339. Total energy = 2892.1170 kcal/mol (2874.9527 without restraints) Performing minimization step: 340. Total energy = 2884.6505 kcal/mol (2867.5002 without restraints) Performing minimization step: 341. Total energy = 2877.2105 kcal/mol (2860.0741 without restraints) Performing minimization step: 342. Total energy = 2869.7970 kcal/mol (2852.6746 without restraints) Performing minimization step: 343. Total energy = 2862.4099 kcal/mol (2845.3013 without restraints) Performing minimization step: 344. Total energy = 2855.0491 kcal/mol (2837.9544 without restraints) Performing minimization step: 345. Total energy = 2847.7143 kcal/mol (2830.6335 without restraints) Performing minimization step: 346. Total energy = 2840.4063 kcal/mol (2823.3393 without restraints) Performing minimization step: 347. Total energy = 2833.1243 kcal/mol (2816.0711 without restraints) Performing minimization step: 348. Total energy = 2825.8683 kcal/mol (2808.8289 without restraints) Performing minimization step: 349. Total energy = 2818.6383 kcal/mol (2801.6126 without restraints) Performing minimization step: 350. Total energy = 2811.4345 kcal/mol (2794.4226 without restraints) Performing minimization step: 351. Total energy = 2804.2561 kcal/mol (2787.2580 without restraints) Performing minimization step: 352. Total energy = 2797.1038 kcal/mol (2780.1193 without restraints) Performing minimization step: 353. Total energy = 2789.9770 kcal/mol (2773.0062 without restraints) Performing minimization step: 354. Total energy = 2782.8766 kcal/mol (2765.9194 without restraints) Performing minimization step: 355. Total energy = 2775.8012 kcal/mol (2758.8577 without restraints) Performing minimization step: 356. Total energy = 2768.7515 kcal/mol (2751.8216 without restraints) Performing minimization step: 357. Total energy = 2761.7277 kcal/mol (2744.8114 without restraints) Performing minimization step: 358. Total energy = 2754.7291 kcal/mol (2737.8264 without restraints) Performing minimization step: 359. Total energy = 2747.7560 kcal/mol (2730.8667 without restraints) Performing minimization step: 360. Total energy = 2740.8082 kcal/mol (2723.9325 without restraints) Performing minimization step: 361. Total energy = 2733.8859 kcal/mol (2717.0236 without restraints) Performing minimization step: 362. Total energy = 2726.9886 kcal/mol (2710.1398 without restraints) Performing minimization step: 363. Total energy = 2720.1168 kcal/mol (2703.2814 without restraints) Performing minimization step: 364. Total energy = 2713.2694 kcal/mol (2696.4473 without restraints) Performing minimization step: 365. Total energy = 2706.4472 kcal/mol (2689.6387 without restraints) Performing minimization step: 366. Total energy = 2699.6506 kcal/mol (2682.8555 without restraints) Performing minimization step: 367. Total energy = 2692.8785 kcal/mol (2676.0967 without restraints) Performing minimization step: 368. Total energy = 2686.1312 kcal/mol (2669.3627 without restraints) Performing minimization step: 369. Total energy = 2679.4084 kcal/mol (2662.6531 without restraints) Performing minimization step: 370. Total energy = 2672.7101 kcal/mol (2655.9682 without restraints) Performing minimization step: 371. Total energy = 2666.0371 kcal/mol (2649.3085 without restraints) Performing minimization step: 372. Total energy = 2659.3887 kcal/mol (2642.6732 without restraints) Performing minimization step: 373. Total energy = 2652.7648 kcal/mol (2636.0625 without restraints) Performing minimization step: 374. Total energy = 2646.1652 kcal/mol (2629.4760 without restraints) Performing minimization step: 375. Total energy = 2639.5899 kcal/mol (2622.9139 without restraints) Performing minimization step: 376. Total energy = 2633.0391 kcal/mol (2616.3762 without restraints) Performing minimization step: 377. Total energy = 2626.5127 kcal/mol (2609.8630 without restraints) Performing minimization step: 378. Total energy = 2620.0106 kcal/mol (2603.3739 without restraints) Performing minimization step: 379. Total energy = 2613.5326 kcal/mol (2596.9089 without restraints) Performing minimization step: 380. Total energy = 2607.0786 kcal/mol (2590.4679 without restraints) Performing minimization step: 381. Total energy = 2600.6486 kcal/mol (2584.0510 without restraints) Performing minimization step: 382. Total energy = 2594.2428 kcal/mol (2577.6581 without restraints) Performing minimization step: 383. Total energy = 2587.8610 kcal/mol (2571.2893 without restraints) Performing minimization step: 384. Total energy = 2581.5027 kcal/mol (2564.9439 without restraints) Performing minimization step: 385. Total energy = 2575.1684 kcal/mol (2558.6225 without restraints) Performing minimization step: 386. Total energy = 2568.8579 kcal/mol (2552.3249 without restraints) Performing minimization step: 387. Total energy = 2562.5704 kcal/mol (2546.0503 without restraints) Performing minimization step: 388. Total energy = 2556.3074 kcal/mol (2539.8000 without restraints) Performing minimization step: 389. Total energy = 2550.0676 kcal/mol (2533.5731 without restraints) Performing minimization step: 390. Total energy = 2543.8514 kcal/mol (2527.3696 without restraints) Performing minimization step: 391. Total energy = 2537.6586 kcal/mol (2521.1896 without restraints) Performing minimization step: 392. Total energy = 2531.4892 kcal/mol (2515.0329 without restraints) Performing minimization step: 393. Total energy = 2525.3431 kcal/mol (2508.8995 without restraints) Performing minimization step: 394. Total energy = 2519.2202 kcal/mol (2502.7892 without restraints) Performing minimization step: 395. Total energy = 2513.1205 kcal/mol (2496.7022 without restraints) Performing minimization step: 396. Total energy = 2507.0434 kcal/mol (2490.6375 without restraints) Performing minimization step: 397. Total energy = 2500.9897 kcal/mol (2484.5966 without restraints) Performing minimization step: 398. Total energy = 2494.9590 kcal/mol (2478.5784 without restraints) Performing minimization step: 399. Total energy = 2488.9513 kcal/mol (2472.5833 without restraints) Performing minimization step: 400. Total energy = 2482.9666 kcal/mol (2466.6110 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 401. Total energy = 2477.0048 kcal/mol (2460.6617 without restraints) Performing minimization step: 402. Total energy = 2471.0656 kcal/mol (2454.7350 without restraints) Performing minimization step: 403. Total energy = 2465.1493 kcal/mol (2448.8311 without restraints) Performing minimization step: 404. Total energy = 2459.2556 kcal/mol (2442.9499 without restraints) Performing minimization step: 405. Total energy = 2453.3845 kcal/mol (2437.0911 without restraints) Performing minimization step: 406. Total energy = 2447.5357 kcal/mol (2431.2547 without restraints) Performing minimization step: 407. Total energy = 2441.7094 kcal/mol (2425.4407 without restraints) Performing minimization step: 408. Total energy = 2435.9053 kcal/mol (2419.6489 without restraints) Performing minimization step: 409. Total energy = 2430.1237 kcal/mol (2413.8795 without restraints) Performing minimization step: 410. Total energy = 2424.3639 kcal/mol (2408.1320 without restraints) Performing minimization step: 411. Total energy = 2418.6263 kcal/mol (2402.4066 without restraints) Performing minimization step: 412. Total energy = 2412.9110 kcal/mol (2396.7036 without restraints) Performing minimization step: 413. Total energy = 2407.2174 kcal/mol (2391.0220 without restraints) Performing minimization step: 414. Total energy = 2401.5461 kcal/mol (2385.3629 without restraints) Performing minimization step: 415. Total energy = 2395.8968 kcal/mol (2379.7257 without restraints) Performing minimization step: 416. Total energy = 2390.2692 kcal/mol (2374.1102 without restraints) Performing minimization step: 417. Total energy = 2384.6635 kcal/mol (2368.5166 without restraints) Performing minimization step: 418. Total energy = 2379.0796 kcal/mol (2362.9447 without restraints) Performing minimization step: 419. Total energy = 2373.5171 kcal/mol (2357.3942 without restraints) Performing minimization step: 420. Total energy = 2367.9766 kcal/mol (2351.8657 without restraints) Performing minimization step: 421. Total energy = 2362.4575 kcal/mol (2346.3585 without restraints) Performing minimization step: 422. Total energy = 2356.9596 kcal/mol (2340.8725 without restraints) Performing minimization step: 423. Total energy = 2351.4834 kcal/mol (2335.4082 without restraints) Performing minimization step: 424. Total energy = 2346.0287 kcal/mol (2329.9654 without restraints) Performing minimization step: 425. Total energy = 2340.5951 kcal/mol (2324.5437 without restraints) Performing minimization step: 426. Total energy = 2335.1829 kcal/mol (2319.1433 without restraints) Performing minimization step: 427. Total energy = 2329.7917 kcal/mol (2313.7639 without restraints) Performing minimization step: 428. Total energy = 2324.4219 kcal/mol (2308.4058 without restraints) Performing minimization step: 429. Total energy = 2319.0728 kcal/mol (2303.0685 without restraints) Performing minimization step: 430. Total energy = 2313.7447 kcal/mol (2297.7521 without restraints) Performing minimization step: 431. Total energy = 2308.4375 kcal/mol (2292.4565 without restraints) Performing minimization step: 432. Total energy = 2303.1511 kcal/mol (2287.1818 without restraints) Performing minimization step: 433. Total energy = 2297.8856 kcal/mol (2281.9279 without restraints) Performing minimization step: 434. Total energy = 2292.6409 kcal/mol (2276.6948 without restraints) Performing minimization step: 435. Total energy = 2287.4166 kcal/mol (2271.4821 without restraints) Performing minimization step: 436. Total energy = 2282.2129 kcal/mol (2266.2899 without restraints) Performing minimization step: 437. Total energy = 2277.0298 kcal/mol (2261.1183 without restraints) Performing minimization step: 438. Total energy = 2271.8671 kcal/mol (2255.9671 without restraints) Performing minimization step: 439. Total energy = 2266.7247 kcal/mol (2250.8361 without restraints) Performing minimization step: 440. Total energy = 2261.6029 kcal/mol (2245.7258 without restraints) Performing minimization step: 441. Total energy = 2256.5012 kcal/mol (2240.6355 without restraints) Performing minimization step: 442. Total energy = 2251.4197 kcal/mol (2235.5653 without restraints) Performing minimization step: 443. Total energy = 2246.3586 kcal/mol (2230.5155 without restraints) Performing minimization step: 444. Total energy = 2241.3172 kcal/mol (2225.4855 without restraints) Performing minimization step: 445. Total energy = 2236.2957 kcal/mol (2220.4753 without restraints) Performing minimization step: 446. Total energy = 2231.2943 kcal/mol (2215.4851 without restraints) Performing minimization step: 447. Total energy = 2226.3128 kcal/mol (2210.5148 without restraints) Performing minimization step: 448. Total energy = 2221.3511 kcal/mol (2205.5643 without restraints) Performing minimization step: 449. Total energy = 2216.4090 kcal/mol (2200.6335 without restraints) Performing minimization step: 450. Total energy = 2211.4865 kcal/mol (2195.7221 without restraints) Performing minimization step: 451. Total energy = 2206.5838 kcal/mol (2190.8306 without restraints) Performing minimization step: 452. Total energy = 2201.7010 kcal/mol (2185.9588 without restraints) Performing minimization step: 453. Total energy = 2196.8371 kcal/mol (2181.1059 without restraints) Performing minimization step: 454. Total energy = 2191.9927 kcal/mol (2176.2726 without restraints) Performing minimization step: 455. Total energy = 2187.1678 kcal/mol (2171.4587 without restraints) Performing minimization step: 456. Total energy = 2182.3620 kcal/mol (2166.6639 without restraints) Performing minimization step: 457. Total energy = 2177.5756 kcal/mol (2161.8885 without restraints) Performing minimization step: 458. Total energy = 2172.8082 kcal/mol (2157.1319 without restraints) Performing minimization step: 459. Total energy = 2168.0600 kcal/mol (2152.3947 without restraints) Performing minimization step: 460. Total energy = 2163.3309 kcal/mol (2147.6764 without restraints) Performing minimization step: 461. Total energy = 2158.6207 kcal/mol (2142.9771 without restraints) Performing minimization step: 462. Total energy = 2153.9293 kcal/mol (2138.2965 without restraints) Performing minimization step: 463. Total energy = 2149.2568 kcal/mol (2133.6348 without restraints) Performing minimization step: 464. Total energy = 2144.6031 kcal/mol (2128.9918 without restraints) Performing minimization step: 465. Total energy = 2139.9681 kcal/mol (2124.3675 without restraints) Performing minimization step: 466. Total energy = 2135.3517 kcal/mol (2119.7618 without restraints) Performing minimization step: 467. Total energy = 2130.7536 kcal/mol (2115.1744 without restraints) Performing minimization step: 468. Total energy = 2126.1743 kcal/mol (2110.6057 without restraints) Performing minimization step: 469. Total energy = 2121.6133 kcal/mol (2106.0554 without restraints) Performing minimization step: 470. Total energy = 2117.0707 kcal/mol (2101.5234 without restraints) Performing minimization step: 471. Total energy = 2112.5465 kcal/mol (2097.0097 without restraints) Performing minimization step: 472. Total energy = 2108.0405 kcal/mol (2092.5143 without restraints) Performing minimization step: 473. Total energy = 2103.5527 kcal/mol (2088.0369 without restraints) Performing minimization step: 474. Total energy = 2099.0829 kcal/mol (2083.5776 without restraints) Performing minimization step: 475. Total energy = 2094.6312 kcal/mol (2079.1364 without restraints) Performing minimization step: 476. Total energy = 2090.1975 kcal/mol (2074.7131 without restraints) Performing minimization step: 477. Total energy = 2085.7816 kcal/mol (2070.3076 without restraints) Performing minimization step: 478. Total energy = 2081.3837 kcal/mol (2065.9200 without restraints) Performing minimization step: 479. Total energy = 2077.0036 kcal/mol (2061.5503 without restraints) Performing minimization step: 480. Total energy = 2072.6411 kcal/mol (2057.1980 without restraints) Performing minimization step: 481. Total energy = 2068.2961 kcal/mol (2052.8632 without restraints) Performing minimization step: 482. Total energy = 2063.9686 kcal/mol (2048.5461 without restraints) Performing minimization step: 483. Total energy = 2059.6588 kcal/mol (2044.2465 without restraints) Performing minimization step: 484. Total energy = 2055.3664 kcal/mol (2039.9643 without restraints) Performing minimization step: 485. Total energy = 2051.0914 kcal/mol (2035.6995 without restraints) Performing minimization step: 486. Total energy = 2046.8335 kcal/mol (2031.4517 without restraints) Performing minimization step: 487. Total energy = 2042.5930 kcal/mol (2027.2213 without restraints) Performing minimization step: 488. Total energy = 2038.3696 kcal/mol (2023.0081 without restraints) Performing minimization step: 489. Total energy = 2034.1636 kcal/mol (2018.8121 without restraints) Performing minimization step: 490. Total energy = 2029.9745 kcal/mol (2014.6330 without restraints) Performing minimization step: 491. Total energy = 2025.8026 kcal/mol (2010.4711 without restraints) Performing minimization step: 492. Total energy = 2021.6473 kcal/mol (2006.3258 without restraints) Performing minimization step: 493. Total energy = 2017.5094 kcal/mol (2002.1978 without restraints) Performing minimization step: 494. Total energy = 2013.3876 kcal/mol (1998.0858 without restraints) Performing minimization step: 495. Total energy = 2009.2826 kcal/mol (1993.9908 without restraints) Performing minimization step: 496. Total energy = 2005.1943 kcal/mol (1989.9124 without restraints) Performing minimization step: 497. Total energy = 2001.1227 kcal/mol (1985.8506 without restraints) Performing minimization step: 498. Total energy = 1997.0675 kcal/mol (1981.8052 without restraints) Performing minimization step: 499. Total energy = 1993.0285 kcal/mol (1977.7761 without restraints) Performing minimization step: 500. Total energy = 1989.0064 kcal/mol (1973.7637 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 501. Total energy = 1985.0006 kcal/mol (1969.7677 without restraints) Performing minimization step: 502. Total energy = 1981.0109 kcal/mol (1965.7876 without restraints) Performing minimization step: 503. Total energy = 1977.0373 kcal/mol (1961.8237 without restraints) Performing minimization step: 504. Total energy = 1973.0796 kcal/mol (1957.8757 without restraints) Performing minimization step: 505. Total energy = 1969.1382 kcal/mol (1953.9439 without restraints) Performing minimization step: 506. Total energy = 1965.2129 kcal/mol (1950.0282 without restraints) Performing minimization step: 507. Total energy = 1961.3034 kcal/mol (1946.1283 without restraints) Performing minimization step: 508. Total energy = 1957.4098 kcal/mol (1942.2442 without restraints) Performing minimization step: 509. Total energy = 1953.5320 kcal/mol (1938.3759 without restraints) Performing minimization step: 510. Total energy = 1949.6699 kcal/mol (1934.5233 without restraints) Performing minimization step: 511. Total energy = 1945.8235 kcal/mol (1930.6864 without restraints) Performing minimization step: 512. Total energy = 1941.9929 kcal/mol (1926.8652 without restraints) Performing minimization step: 513. Total energy = 1938.1776 kcal/mol (1923.0593 without restraints) Performing minimization step: 514. Total energy = 1934.3777 kcal/mol (1919.2688 without restraints) Performing minimization step: 515. Total energy = 1930.5933 kcal/mol (1915.4938 without restraints) Performing minimization step: 516. Total energy = 1926.8244 kcal/mol (1911.7342 without restraints) Performing minimization step: 517. Total energy = 1923.0704 kcal/mol (1907.9895 without restraints) Performing minimization step: 518. Total energy = 1919.3320 kcal/mol (1904.2604 without restraints) Performing minimization step: 519. Total energy = 1915.6085 kcal/mol (1900.5461 without restraints) Performing minimization step: 520. Total energy = 1911.9001 kcal/mol (1896.8470 without restraints) Performing minimization step: 521. Total energy = 1908.2066 kcal/mol (1893.1626 without restraints) Performing minimization step: 522. Total energy = 1904.5282 kcal/mol (1889.4935 without restraints) Performing minimization step: 523. Total energy = 1900.8647 kcal/mol (1885.8391 without restraints) Performing minimization step: 524. Total energy = 1897.2160 kcal/mol (1882.1995 without restraints) Performing minimization step: 525. Total energy = 1893.5818 kcal/mol (1878.5742 without restraints) Performing minimization step: 526. Total energy = 1889.9625 kcal/mol (1874.9642 without restraints) Performing minimization step: 527. Total energy = 1886.3578 kcal/mol (1871.3686 without restraints) Performing minimization step: 528. Total energy = 1882.7677 kcal/mol (1867.7876 without restraints) Performing minimization step: 529. Total energy = 1879.1922 kcal/mol (1864.2210 without restraints) Performing minimization step: 530. Total energy = 1875.6311 kcal/mol (1860.6689 without restraints) Performing minimization step: 531. Total energy = 1872.0843 kcal/mol (1857.1311 without restraints) Performing minimization step: 532. Total energy = 1868.5518 kcal/mol (1853.6075 without restraints) Performing minimization step: 533. Total energy = 1865.0336 kcal/mol (1850.0982 without restraints) Performing minimization step: 534. Total energy = 1861.5296 kcal/mol (1846.6031 without restraints) Performing minimization step: 535. Total energy = 1858.0396 kcal/mol (1843.1220 without restraints) Performing minimization step: 536. Total energy = 1854.5637 kcal/mol (1839.6549 without restraints) Performing minimization step: 537. Total energy = 1851.1021 kcal/mol (1836.2021 without restraints) Performing minimization step: 538. Total energy = 1847.6541 kcal/mol (1832.7629 without restraints) Performing minimization step: 539. Total energy = 1844.2200 kcal/mol (1829.3376 without restraints) Performing minimization step: 540. Total energy = 1840.7997 kcal/mol (1825.9260 without restraints) Performing minimization step: 541. Total energy = 1837.3933 kcal/mol (1822.5284 without restraints) Performing minimization step: 542. Total energy = 1834.0005 kcal/mol (1819.1443 without restraints) Performing minimization step: 543. Total energy = 1830.6213 kcal/mol (1815.7737 without restraints) Performing minimization step: 544. Total energy = 1827.2555 kcal/mol (1812.4165 without restraints) Performing minimization step: 545. Total energy = 1823.9033 kcal/mol (1809.0730 without restraints) Performing minimization step: 546. Total energy = 1820.5645 kcal/mol (1805.7428 without restraints) Performing minimization step: 547. Total energy = 1817.2392 kcal/mol (1802.4261 without restraints) Performing minimization step: 548. Total energy = 1813.9272 kcal/mol (1799.1226 without restraints) Performing minimization step: 549. Total energy = 1810.6284 kcal/mol (1795.8323 without restraints) Performing minimization step: 550. Total energy = 1807.3428 kcal/mol (1792.5553 without restraints) Performing minimization step: 551. Total energy = 1804.0701 kcal/mol (1789.2910 without restraints) Performing minimization step: 552. Total energy = 1800.8103 kcal/mol (1786.0398 without restraints) Performing minimization step: 553. Total energy = 1797.5639 kcal/mol (1782.8018 without restraints) Performing minimization step: 554. Total energy = 1794.3304 kcal/mol (1779.5767 without restraints) Performing minimization step: 555. Total energy = 1791.1098 kcal/mol (1776.3646 without restraints) Performing minimization step: 556. Total energy = 1787.9016 kcal/mol (1773.1648 without restraints) Performing minimization step: 557. Total energy = 1784.7067 kcal/mol (1769.9782 without restraints) Performing minimization step: 558. Total energy = 1781.5242 kcal/mol (1766.8042 without restraints) Performing minimization step: 559. Total energy = 1778.3544 kcal/mol (1763.6426 without restraints) Performing minimization step: 560. Total energy = 1775.1974 kcal/mol (1760.4938 without restraints) Performing minimization step: 561. Total energy = 1772.0533 kcal/mol (1757.3581 without restraints) Performing minimization step: 562. Total energy = 1768.9212 kcal/mol (1754.2342 without restraints) Performing minimization step: 563. Total energy = 1765.8014 kcal/mol (1751.1226 without restraints) Performing minimization step: 564. Total energy = 1762.6940 kcal/mol (1748.0235 without restraints) Performing minimization step: 565. Total energy = 1759.5989 kcal/mol (1744.9366 without restraints) Performing minimization step: 566. Total energy = 1756.5162 kcal/mol (1741.8622 without restraints) Performing minimization step: 567. Total energy = 1753.4457 kcal/mol (1738.7997 without restraints) Performing minimization step: 568. Total energy = 1750.3871 kcal/mol (1735.7493 without restraints) Performing minimization step: 569. Total energy = 1747.3407 kcal/mol (1732.7110 without restraints) Performing minimization step: 570. Total energy = 1744.3060 kcal/mol (1729.6845 without restraints) Performing minimization step: 571. Total energy = 1741.2834 kcal/mol (1726.6698 without restraints) Performing minimization step: 572. Total energy = 1738.2729 kcal/mol (1723.6675 without restraints) Performing minimization step: 573. Total energy = 1735.2742 kcal/mol (1720.6769 without restraints) Performing minimization step: 574. Total energy = 1732.2872 kcal/mol (1717.6979 without restraints) Performing minimization step: 575. Total energy = 1729.3119 kcal/mol (1714.7306 without restraints) Performing minimization step: 576. Total energy = 1726.3482 kcal/mol (1711.7749 without restraints) Performing minimization step: 577. Total energy = 1723.3961 kcal/mol (1708.8308 without restraints) Performing minimization step: 578. Total energy = 1720.4555 kcal/mol (1705.8980 without restraints) Performing minimization step: 579. Total energy = 1717.5263 kcal/mol (1702.9769 without restraints) Performing minimization step: 580. Total energy = 1714.6087 kcal/mol (1700.0672 without restraints) Performing minimization step: 581. Total energy = 1711.7025 kcal/mol (1697.1689 without restraints) Performing minimization step: 582. Total energy = 1708.8074 kcal/mol (1694.2818 without restraints) Performing minimization step: 583. Total energy = 1705.9238 kcal/mol (1691.4060 without restraints) Performing minimization step: 584. Total energy = 1703.0513 kcal/mol (1688.5415 without restraints) Performing minimization step: 585. Total energy = 1700.1901 kcal/mol (1685.6881 without restraints) Performing minimization step: 586. Total energy = 1697.3399 kcal/mol (1682.8457 without restraints) Performing minimization step: 587. Total energy = 1694.5009 kcal/mol (1680.0145 without restraints) Performing minimization step: 588. Total energy = 1691.6728 kcal/mol (1677.1942 without restraints) Performing minimization step: 589. Total energy = 1688.8557 kcal/mol (1674.3849 without restraints) Performing minimization step: 590. Total energy = 1686.0495 kcal/mol (1671.5865 without restraints) Performing minimization step: 591. Total energy = 1683.2539 kcal/mol (1668.7986 without restraints) Performing minimization step: 592. Total energy = 1680.4692 kcal/mol (1666.0217 without restraints) Performing minimization step: 593. Total energy = 1677.6954 kcal/mol (1663.2555 without restraints) Performing minimization step: 594. Total energy = 1674.9322 kcal/mol (1660.5001 without restraints) Performing minimization step: 595. Total energy = 1672.1796 kcal/mol (1657.7551 without restraints) Performing minimization step: 596. Total energy = 1669.4372 kcal/mol (1655.0204 without restraints) Performing minimization step: 597. Total energy = 1666.7055 kcal/mol (1652.2964 without restraints) Performing minimization step: 598. Total energy = 1663.9847 kcal/mol (1649.5833 without restraints) Performing minimization step: 599. Total energy = 1661.2741 kcal/mol (1646.8803 without restraints) Performing minimization step: 600. Total energy = 1658.5739 kcal/mol (1644.1876 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 601. Total energy = 1655.8839 kcal/mol (1641.5054 without restraints) Performing minimization step: 602. Total energy = 1653.2049 kcal/mol (1638.8339 without restraints) Performing minimization step: 603. Total energy = 1650.5355 kcal/mol (1636.1721 without restraints) Performing minimization step: 604. Total energy = 1647.8765 kcal/mol (1633.5207 without restraints) Performing minimization step: 605. Total energy = 1645.2275 kcal/mol (1630.8793 without restraints) Performing minimization step: 606. Total energy = 1642.5889 kcal/mol (1628.2482 without restraints) Performing minimization step: 607. Total energy = 1639.9599 kcal/mol (1625.6268 without restraints) Performing minimization step: 608. Total energy = 1637.3412 kcal/mol (1623.0156 without restraints) Performing minimization step: 609. Total energy = 1634.7322 kcal/mol (1620.4141 without restraints) Performing minimization step: 610. Total energy = 1632.1331 kcal/mol (1617.8224 without restraints) Performing minimization step: 611. Total energy = 1629.5435 kcal/mol (1615.2404 without restraints) Performing minimization step: 612. Total energy = 1626.9640 kcal/mol (1612.6684 without restraints) Performing minimization step: 613. Total energy = 1624.3942 kcal/mol (1610.1060 without restraints) Performing minimization step: 614. Total energy = 1621.8341 kcal/mol (1607.5533 without restraints) Performing minimization step: 615. Total energy = 1619.2835 kcal/mol (1605.0103 without restraints) Performing minimization step: 616. Total energy = 1616.7426 kcal/mol (1602.4768 without restraints) Performing minimization step: 617. Total energy = 1614.2113 kcal/mol (1599.9529 without restraints) Performing minimization step: 618. Total energy = 1611.6892 kcal/mol (1597.4381 without restraints) Performing minimization step: 619. Total energy = 1609.1765 kcal/mol (1594.9329 without restraints) Performing minimization step: 620. Total energy = 1606.6734 kcal/mol (1592.4370 without restraints) Performing minimization step: 621. Total energy = 1604.1797 kcal/mol (1589.9509 without restraints) Performing minimization step: 622. Total energy = 1601.6954 kcal/mol (1587.4740 without restraints) Performing minimization step: 623. Total energy = 1599.2203 kcal/mol (1585.0062 without restraints) Performing minimization step: 624. Total energy = 1596.7549 kcal/mol (1582.5482 without restraints) Performing minimization step: 625. Total energy = 1594.2983 kcal/mol (1580.0989 without restraints) Performing minimization step: 626. Total energy = 1591.8507 kcal/mol (1577.6585 without restraints) Performing minimization step: 627. Total energy = 1589.4122 kcal/mol (1575.2276 without restraints) Performing minimization step: 628. Total energy = 1586.9827 kcal/mol (1572.8053 without restraints) Performing minimization step: 629. Total energy = 1584.5622 kcal/mol (1570.3920 without restraints) Performing minimization step: 630. Total energy = 1582.1505 kcal/mol (1567.9878 without restraints) Performing minimization step: 631. Total energy = 1579.7480 kcal/mol (1565.5926 without restraints) Performing minimization step: 632. Total energy = 1577.3545 kcal/mol (1563.2064 without restraints) Performing minimization step: 633. Total energy = 1574.9698 kcal/mol (1560.8289 without restraints) Performing minimization step: 634. Total energy = 1572.5938 kcal/mol (1558.4602 without restraints) Performing minimization step: 635. Total energy = 1570.2266 kcal/mol (1556.1002 without restraints) Performing minimization step: 636. Total energy = 1567.8682 kcal/mol (1553.7492 without restraints) Performing minimization step: 637. Total energy = 1565.5180 kcal/mol (1551.4061 without restraints) Performing minimization step: 638. Total energy = 1563.1767 kcal/mol (1549.0721 without restraints) Performing minimization step: 639. Total energy = 1560.8438 kcal/mol (1546.7464 without restraints) Performing minimization step: 640. Total energy = 1558.5197 kcal/mol (1544.4296 without restraints) Performing minimization step: 641. Total energy = 1556.2040 kcal/mol (1542.1210 without restraints) Performing minimization step: 642. Total energy = 1553.8967 kcal/mol (1539.8211 without restraints) Performing minimization step: 643. Total energy = 1551.5980 kcal/mol (1537.5296 without restraints) Performing minimization step: 644. Total energy = 1549.3074 kcal/mol (1535.2462 without restraints) Performing minimization step: 645. Total energy = 1547.0255 kcal/mol (1532.9715 without restraints) Performing minimization step: 646. Total energy = 1544.7520 kcal/mol (1530.7052 without restraints) Performing minimization step: 647. Total energy = 1542.4865 kcal/mol (1528.4469 without restraints) Performing minimization step: 648. Total energy = 1540.2292 kcal/mol (1526.1968 without restraints) Performing minimization step: 649. Total energy = 1537.9801 kcal/mol (1523.9549 without restraints) Performing minimization step: 650. Total energy = 1535.7391 kcal/mol (1521.7211 without restraints) Performing minimization step: 651. Total energy = 1533.5063 kcal/mol (1519.4955 without restraints) Performing minimization step: 652. Total energy = 1531.2815 kcal/mol (1517.2778 without restraints) Performing minimization step: 653. Total energy = 1529.0648 kcal/mol (1515.0683 without restraints) Performing minimization step: 654. Total energy = 1526.8560 kcal/mol (1512.8667 without restraints) Performing minimization step: 655. Total energy = 1524.6554 kcal/mol (1510.6732 without restraints) Performing minimization step: 656. Total energy = 1522.4628 kcal/mol (1508.4879 without restraints) Performing minimization step: 657. Total energy = 1520.2779 kcal/mol (1506.3101 without restraints) Performing minimization step: 658. Total energy = 1518.1007 kcal/mol (1504.1401 without restraints) Performing minimization step: 659. Total energy = 1515.9314 kcal/mol (1501.9778 without restraints) Performing minimization step: 660. Total energy = 1513.7698 kcal/mol (1499.8234 without restraints) Performing minimization step: 661. Total energy = 1511.6158 kcal/mol (1497.6766 without restraints) Performing minimization step: 662. Total energy = 1509.4694 kcal/mol (1495.5373 without restraints) Performing minimization step: 663. Total energy = 1507.3309 kcal/mol (1493.4059 without restraints) Performing minimization step: 664. Total energy = 1505.1999 kcal/mol (1491.2820 without restraints) Performing minimization step: 665. Total energy = 1503.0765 kcal/mol (1489.1658 without restraints) Performing minimization step: 666. Total energy = 1500.9608 kcal/mol (1487.0572 without restraints) Performing minimization step: 667. Total energy = 1498.8529 kcal/mol (1484.9567 without restraints) Performing minimization step: 668. Total energy = 1496.7523 kcal/mol (1482.8630 without restraints) Performing minimization step: 669. Total energy = 1494.6590 kcal/mol (1480.7768 without restraints) Performing minimization step: 670. Total energy = 1492.5730 kcal/mol (1478.6980 without restraints) Performing minimization step: 671. Total energy = 1490.4946 kcal/mol (1476.6269 without restraints) Performing minimization step: 672. Total energy = 1488.4234 kcal/mol (1474.5627 without restraints) Performing minimization step: 673. Total energy = 1486.3596 kcal/mol (1472.5060 without restraints) Performing minimization step: 674. Total energy = 1484.3028 kcal/mol (1470.4563 without restraints) Performing minimization step: 675. Total energy = 1482.2535 kcal/mol (1468.4142 without restraints) Performing minimization step: 676. Total energy = 1480.2115 kcal/mol (1466.3792 without restraints) Performing minimization step: 677. Total energy = 1478.1766 kcal/mol (1464.3515 without restraints) Performing minimization step: 678. Total energy = 1476.1491 kcal/mol (1462.3311 without restraints) Performing minimization step: 679. Total energy = 1474.1285 kcal/mol (1460.3176 without restraints) Performing minimization step: 680. Total energy = 1472.1149 kcal/mol (1458.3112 without restraints) Performing minimization step: 681. Total energy = 1470.1085 kcal/mol (1456.3119 without restraints) Performing minimization step: 682. Total energy = 1468.1090 kcal/mol (1454.3195 without restraints) Performing minimization step: 683. Total energy = 1466.1166 kcal/mol (1452.3343 without restraints) Performing minimization step: 684. Total energy = 1464.1313 kcal/mol (1450.3562 without restraints) Performing minimization step: 685. Total energy = 1462.1528 kcal/mol (1448.3847 without restraints) Performing minimization step: 686. Total energy = 1460.1813 kcal/mol (1446.4203 without restraints) Performing minimization step: 687. Total energy = 1458.2165 kcal/mol (1444.4626 without restraints) Performing minimization step: 688. Total energy = 1456.2585 kcal/mol (1442.5118 without restraints) Performing minimization step: 689. Total energy = 1454.3075 kcal/mol (1440.5679 without restraints) Performing minimization step: 690. Total energy = 1452.3634 kcal/mol (1438.6309 without restraints) Performing minimization step: 691. Total energy = 1450.4258 kcal/mol (1436.7005 without restraints) Performing minimization step: 692. Total energy = 1448.4949 kcal/mol (1434.7767 without restraints) Performing minimization step: 693. Total energy = 1446.5705 kcal/mol (1432.8594 without restraints) Performing minimization step: 694. Total energy = 1444.6530 kcal/mol (1430.9491 without restraints) Performing minimization step: 695. Total energy = 1442.7421 kcal/mol (1429.0453 without restraints) Performing minimization step: 696. Total energy = 1440.8378 kcal/mol (1427.1482 without restraints) Performing minimization step: 697. Total energy = 1438.9401 kcal/mol (1425.2576 without restraints) Performing minimization step: 698. Total energy = 1437.0489 kcal/mol (1423.3737 without restraints) Performing minimization step: 699. Total energy = 1435.1642 kcal/mol (1421.4960 without restraints) Performing minimization step: 700. Total energy = 1433.2861 kcal/mol (1419.6251 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 701. Total energy = 1431.4149 kcal/mol (1417.7610 without restraints) Performing minimization step: 702. Total energy = 1429.5497 kcal/mol (1415.9029 without restraints) Performing minimization step: 703. Total energy = 1427.6908 kcal/mol (1414.0512 without restraints) Performing minimization step: 704. Total energy = 1425.8383 kcal/mol (1412.2059 without restraints) Performing minimization step: 705. Total energy = 1423.9922 kcal/mol (1410.3669 without restraints) Performing minimization step: 706. Total energy = 1422.1525 kcal/mol (1408.5345 without restraints) Performing minimization step: 707. Total energy = 1420.3191 kcal/mol (1406.7082 without restraints) Performing minimization step: 708. Total energy = 1418.4919 kcal/mol (1404.8882 without restraints) Performing minimization step: 709. Total energy = 1416.6712 kcal/mol (1403.0748 without restraints) Performing minimization step: 710. Total energy = 1414.8569 kcal/mol (1401.2677 without restraints) Performing minimization step: 711. Total energy = 1413.0484 kcal/mol (1399.4663 without restraints) Performing minimization step: 712. Total energy = 1411.2459 kcal/mol (1397.6709 without restraints) Performing minimization step: 713. Total energy = 1409.4496 kcal/mol (1395.8818 without restraints) Performing minimization step: 714. Total energy = 1407.6594 kcal/mol (1394.0989 without restraints) Performing minimization step: 715. Total energy = 1405.8752 kcal/mol (1392.3218 without restraints) Performing minimization step: 716. Total energy = 1404.0972 kcal/mol (1390.5510 without restraints) Performing minimization step: 717. Total energy = 1402.3255 kcal/mol (1388.7866 without restraints) Performing minimization step: 718. Total energy = 1400.5596 kcal/mol (1387.0279 without restraints) Performing minimization step: 719. Total energy = 1398.7997 kcal/mol (1385.2752 without restraints) Performing minimization step: 720. Total energy = 1397.0459 kcal/mol (1383.5287 without restraints) Performing minimization step: 721. Total energy = 1395.2980 kcal/mol (1381.7879 without restraints) Performing minimization step: 722. Total energy = 1393.5559 kcal/mol (1380.0530 without restraints) Performing minimization step: 723. Total energy = 1391.8197 kcal/mol (1378.3241 without restraints) Performing minimization step: 724. Total energy = 1390.0893 kcal/mol (1376.6009 without restraints) Performing minimization step: 725. Total energy = 1388.3648 kcal/mol (1374.8836 without restraints) Performing minimization step: 726. Total energy = 1386.6462 kcal/mol (1373.1723 without restraints) Performing minimization step: 727. Total energy = 1384.9336 kcal/mol (1371.4669 without restraints) Performing minimization step: 728. Total energy = 1383.2265 kcal/mol (1369.7671 without restraints) Performing minimization step: 729. Total energy = 1381.5254 kcal/mol (1368.0733 without restraints) Performing minimization step: 730. Total energy = 1379.8298 kcal/mol (1366.3849 without restraints) Performing minimization step: 731. Total energy = 1378.1398 kcal/mol (1364.7022 without restraints) Performing minimization step: 732. Total energy = 1376.4556 kcal/mol (1363.0253 without restraints) Performing minimization step: 733. Total energy = 1374.7771 kcal/mol (1361.3541 without restraints) Performing minimization step: 734. Total energy = 1373.1045 kcal/mol (1359.6888 without restraints) Performing minimization step: 735. Total energy = 1371.4372 kcal/mol (1358.0287 without restraints) Performing minimization step: 736. Total energy = 1369.7755 kcal/mol (1356.3744 without restraints) Performing minimization step: 737. Total energy = 1368.1192 kcal/mol (1354.7254 without restraints) Performing minimization step: 738. Total energy = 1366.4687 kcal/mol (1353.0823 without restraints) Performing minimization step: 739. Total energy = 1364.8236 kcal/mol (1351.4445 without restraints) Performing minimization step: 740. Total energy = 1363.1842 kcal/mol (1349.8124 without restraints) Performing minimization step: 741. Total energy = 1361.5503 kcal/mol (1348.1858 without restraints) Performing minimization step: 742. Total energy = 1359.9221 kcal/mol (1346.5649 without restraints) Performing minimization step: 743. Total energy = 1358.2991 kcal/mol (1344.9492 without restraints) Performing minimization step: 744. Total energy = 1356.6815 kcal/mol (1343.3391 without restraints) Performing minimization step: 745. Total energy = 1355.0696 kcal/mol (1341.7345 without restraints) Performing minimization step: 746. Total energy = 1353.4629 kcal/mol (1340.1351 without restraints) Performing minimization step: 747. Total energy = 1351.8614 kcal/mol (1338.5411 without restraints) Performing minimization step: 748. Total energy = 1350.2653 kcal/mol (1336.9523 without restraints) Performing minimization step: 749. Total energy = 1348.6746 kcal/mol (1335.3689 without restraints) Performing minimization step: 750. Total energy = 1347.0892 kcal/mol (1333.7910 without restraints) Performing minimization step: 751. Total energy = 1345.5091 kcal/mol (1332.2181 without restraints) Performing minimization step: 752. Total energy = 1343.9339 kcal/mol (1330.6504 without restraints) Performing minimization step: 753. Total energy = 1342.3639 kcal/mol (1329.0878 without restraints) Performing minimization step: 754. Total energy = 1340.7995 kcal/mol (1327.5308 without restraints) Performing minimization step: 755. Total energy = 1339.2403 kcal/mol (1325.9791 without restraints) Performing minimization step: 756. Total energy = 1337.6862 kcal/mol (1324.4324 without restraints) Performing minimization step: 757. Total energy = 1336.1373 kcal/mol (1322.8908 without restraints) Performing minimization step: 758. Total energy = 1334.5938 kcal/mol (1321.3548 without restraints) Performing minimization step: 759. Total energy = 1333.0554 kcal/mol (1319.8239 without restraints) Performing minimization step: 760. Total energy = 1331.5222 kcal/mol (1318.2982 without restraints) Performing minimization step: 761. Total energy = 1329.9939 kcal/mol (1316.7773 without restraints) Performing minimization step: 762. Total energy = 1328.4706 kcal/mol (1315.2614 without restraints) Performing minimization step: 763. Total energy = 1326.9525 kcal/mol (1313.7508 without restraints) Performing minimization step: 764. Total energy = 1325.4391 kcal/mol (1312.2449 without restraints) Performing minimization step: 765. Total energy = 1323.9311 kcal/mol (1310.7444 without restraints) Performing minimization step: 766. Total energy = 1322.4280 kcal/mol (1309.2488 without restraints) Performing minimization step: 767. Total energy = 1320.9297 kcal/mol (1307.7581 without restraints) Performing minimization step: 768. Total energy = 1319.4367 kcal/mol (1306.2725 without restraints) Performing minimization step: 769. Total energy = 1317.9488 kcal/mol (1304.7921 without restraints) Performing minimization step: 770. Total energy = 1316.4658 kcal/mol (1303.3167 without restraints) Performing minimization step: 771. Total energy = 1314.9874 kcal/mol (1301.8458 without restraints) Performing minimization step: 772. Total energy = 1313.5140 kcal/mol (1300.3799 without restraints) Performing minimization step: 773. Total energy = 1312.0455 kcal/mol (1298.9190 without restraints) Performing minimization step: 774. Total energy = 1310.5819 kcal/mol (1297.4629 without restraints) Performing minimization step: 775. Total energy = 1309.1231 kcal/mol (1296.0117 without restraints) Performing minimization step: 776. Total energy = 1307.6692 kcal/mol (1294.5653 without restraints) Performing minimization step: 777. Total energy = 1306.2202 kcal/mol (1293.1239 without restraints) Performing minimization step: 778. Total energy = 1304.7757 kcal/mol (1291.6869 without restraints) Performing minimization step: 779. Total energy = 1303.3360 kcal/mol (1290.2548 without restraints) Performing minimization step: 780. Total energy = 1301.9012 kcal/mol (1288.8277 without restraints) Performing minimization step: 781. Total energy = 1300.4712 kcal/mol (1287.4053 without restraints) Performing minimization step: 782. Total energy = 1299.0458 kcal/mol (1285.9874 without restraints) Performing minimization step: 783. Total energy = 1297.6255 kcal/mol (1284.5748 without restraints) Performing minimization step: 784. Total energy = 1296.2097 kcal/mol (1283.1666 without restraints) Performing minimization step: 785. Total energy = 1294.7987 kcal/mol (1281.7632 without restraints) Performing minimization step: 786. Total energy = 1293.3920 kcal/mol (1280.3642 without restraints) Performing minimization step: 787. Total energy = 1291.9905 kcal/mol (1278.9703 without restraints) Performing minimization step: 788. Total energy = 1290.5934 kcal/mol (1277.5808 without restraints) Performing minimization step: 789. Total energy = 1289.2009 kcal/mol (1276.1960 without restraints) Performing minimization step: 790. Total energy = 1287.8133 kcal/mol (1274.8163 without restraints) Performing minimization step: 791. Total energy = 1286.4302 kcal/mol (1273.4406 without restraints) Performing minimization step: 792. Total energy = 1285.0518 kcal/mol (1272.0700 without restraints) Performing minimization step: 793. Total energy = 1283.6777 kcal/mol (1270.7035 without restraints) Performing minimization step: 794. Total energy = 1282.3083 kcal/mol (1269.3419 without restraints) Performing minimization step: 795. Total energy = 1280.9434 kcal/mol (1267.9846 without restraints) Performing minimization step: 796. Total energy = 1279.5829 kcal/mol (1266.6319 without restraints) Performing minimization step: 797. Total energy = 1278.2267 kcal/mol (1265.2833 without restraints) Performing minimization step: 798. Total energy = 1276.8752 kcal/mol (1263.9396 without restraints) Performing minimization step: 799. Total energy = 1275.5283 kcal/mol (1262.6004 without restraints) Performing minimization step: 800. Total energy = 1274.1857 kcal/mol (1261.2656 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 801. Total energy = 1272.8475 kcal/mol (1259.9351 without restraints) Performing minimization step: 802. Total energy = 1271.5137 kcal/mol (1258.6091 without restraints) Performing minimization step: 803. Total energy = 1270.1845 kcal/mol (1257.2876 without restraints) Performing minimization step: 804. Total energy = 1268.8600 kcal/mol (1255.9709 without restraints) Performing minimization step: 805. Total energy = 1267.5396 kcal/mol (1254.6583 without restraints) Performing minimization step: 806. Total energy = 1266.2231 kcal/mol (1253.3496 without restraints) Performing minimization step: 807. Total energy = 1264.9119 kcal/mol (1252.0462 without restraints) Performing minimization step: 808. Total energy = 1263.6046 kcal/mol (1250.7467 without restraints) Performing minimization step: 809. Total energy = 1262.3016 kcal/mol (1249.4515 without restraints) Performing minimization step: 810. Total energy = 1261.0031 kcal/mol (1248.1608 without restraints) Performing minimization step: 811. Total energy = 1259.7087 kcal/mol (1246.8743 without restraints) Performing minimization step: 812. Total energy = 1258.4187 kcal/mol (1245.5921 without restraints) Performing minimization step: 813. Total energy = 1257.1330 kcal/mol (1244.3143 without restraints) Performing minimization step: 814. Total energy = 1255.8516 kcal/mol (1243.0407 without restraints) Performing minimization step: 815. Total energy = 1254.5742 kcal/mol (1241.7711 without restraints) Performing minimization step: 816. Total energy = 1253.3013 kcal/mol (1240.5061 without restraints) Performing minimization step: 817. Total energy = 1252.0326 kcal/mol (1239.2452 without restraints) Performing minimization step: 818. Total energy = 1250.7681 kcal/mol (1237.9887 without restraints) Performing minimization step: 819. Total energy = 1249.5079 kcal/mol (1236.7363 without restraints) Performing minimization step: 820. Total energy = 1248.2516 kcal/mol (1235.4879 without restraints) Performing minimization step: 821. Total energy = 1246.9997 kcal/mol (1234.2441 without restraints) Performing minimization step: 822. Total energy = 1245.7523 kcal/mol (1233.0045 without restraints) Performing minimization step: 823. Total energy = 1244.5088 kcal/mol (1231.7689 without restraints) Performing minimization step: 824. Total energy = 1243.2695 kcal/mol (1230.5375 without restraints) Performing minimization step: 825. Total energy = 1242.0345 kcal/mol (1229.3105 without restraints) Performing minimization step: 826. Total energy = 1240.8034 kcal/mol (1228.0873 without restraints) Performing minimization step: 827. Total energy = 1239.5765 kcal/mol (1226.8683 without restraints) Performing minimization step: 828. Total energy = 1238.3538 kcal/mol (1225.6536 without restraints) Performing minimization step: 829. Total energy = 1237.1352 kcal/mol (1224.4429 without restraints) Performing minimization step: 830. Total energy = 1235.9205 kcal/mol (1223.2362 without restraints) Performing minimization step: 831. Total energy = 1234.7098 kcal/mol (1222.0335 without restraints) Performing minimization step: 832. Total energy = 1233.5029 kcal/mol (1220.8346 without restraints) Performing minimization step: 833. Total energy = 1232.3003 kcal/mol (1219.6401 without restraints) Performing minimization step: 834. Total energy = 1231.1021 kcal/mol (1218.4498 without restraints) Performing minimization step: 835. Total energy = 1229.9076 kcal/mol (1217.2633 without restraints) Performing minimization step: 836. Total energy = 1228.7173 kcal/mol (1216.0811 without restraints) Performing minimization step: 837. Total energy = 1227.5308 kcal/mol (1214.9026 without restraints) Performing minimization step: 838. Total energy = 1226.3483 kcal/mol (1213.7282 without restraints) Performing minimization step: 839. Total energy = 1225.1698 kcal/mol (1212.5577 without restraints) Performing minimization step: 840. Total energy = 1223.9952 kcal/mol (1211.3912 without restraints) Performing minimization step: 841. Total energy = 1222.8246 kcal/mol (1210.2286 without restraints) Performing minimization step: 842. Total energy = 1221.6577 kcal/mol (1209.0698 without restraints) Performing minimization step: 843. Total energy = 1220.4950 kcal/mol (1207.9151 without restraints) Performing minimization step: 844. Total energy = 1219.3362 kcal/mol (1206.7644 without restraints) Performing minimization step: 845. Total energy = 1218.1813 kcal/mol (1205.6175 without restraints) Performing minimization step: 846. Total energy = 1217.0303 kcal/mol (1204.4747 without restraints) Performing minimization step: 847. Total energy = 1215.8832 kcal/mol (1203.3357 without restraints) Performing minimization step: 848. Total energy = 1214.7399 kcal/mol (1202.2005 without restraints) Performing minimization step: 849. Total energy = 1213.6003 kcal/mol (1201.0690 without restraints) Performing minimization step: 850. Total energy = 1212.4649 kcal/mol (1199.9417 without restraints) Performing minimization step: 851. Total energy = 1211.3332 kcal/mol (1198.8181 without restraints) Performing minimization step: 852. Total energy = 1210.2053 kcal/mol (1197.6984 without restraints) Performing minimization step: 853. Total energy = 1209.0812 kcal/mol (1196.5825 without restraints) Performing minimization step: 854. Total energy = 1207.9610 kcal/mol (1195.4704 without restraints) Performing minimization step: 855. Total energy = 1206.8444 kcal/mol (1194.3619 without restraints) Performing minimization step: 856. Total energy = 1205.7317 kcal/mol (1193.2574 without restraints) Performing minimization step: 857. Total energy = 1204.6228 kcal/mol (1192.1567 without restraints) Performing minimization step: 858. Total energy = 1203.5177 kcal/mol (1191.0598 without restraints) Performing minimization step: 859. Total energy = 1202.4163 kcal/mol (1189.9667 without restraints) Performing minimization step: 860. Total energy = 1201.3192 kcal/mol (1188.8777 without restraints) Performing minimization step: 861. Total energy = 1200.2253 kcal/mol (1187.7921 without restraints) Performing minimization step: 862. Total energy = 1199.1352 kcal/mol (1186.7102 without restraints) Performing minimization step: 863. Total energy = 1198.0488 kcal/mol (1185.6320 without restraints) Performing minimization step: 864. Total energy = 1196.9661 kcal/mol (1184.5575 without restraints) Performing minimization step: 865. Total energy = 1195.8870 kcal/mol (1183.4866 without restraints) Performing minimization step: 866. Total energy = 1194.8117 kcal/mol (1182.4196 without restraints) Performing minimization step: 867. Total energy = 1193.7400 kcal/mol (1181.3562 without restraints) Performing minimization step: 868. Total energy = 1192.6719 kcal/mol (1180.2963 without restraints) Performing minimization step: 869. Total energy = 1191.6078 kcal/mol (1179.2405 without restraints) Performing minimization step: 870. Total energy = 1190.5474 kcal/mol (1178.1884 without restraints) Performing minimization step: 871. Total energy = 1189.4905 kcal/mol (1177.1398 without restraints) Performing minimization step: 872. Total energy = 1188.4371 kcal/mol (1176.0946 without restraints) Performing minimization step: 873. Total energy = 1187.3871 kcal/mol (1175.0530 without restraints) Performing minimization step: 874. Total energy = 1186.3410 kcal/mol (1174.0151 without restraints) Performing minimization step: 875. Total energy = 1185.2984 kcal/mol (1172.9808 without restraints) Performing minimization step: 876. Total energy = 1184.2594 kcal/mol (1171.9502 without restraints) Performing minimization step: 877. Total energy = 1183.2241 kcal/mol (1170.9232 without restraints) Performing minimization step: 878. Total energy = 1182.1923 kcal/mol (1169.8997 without restraints) Performing minimization step: 879. Total energy = 1181.1639 kcal/mol (1168.8797 without restraints) Performing minimization step: 880. Total energy = 1180.1392 kcal/mol (1167.8633 without restraints) Performing minimization step: 881. Total energy = 1179.1180 kcal/mol (1166.8504 without restraints) Performing minimization step: 882. Total energy = 1178.1004 kcal/mol (1165.8412 without restraints) Performing minimization step: 883. Total energy = 1177.0863 kcal/mol (1164.8355 without restraints) Performing minimization step: 884. Total energy = 1176.0758 kcal/mol (1163.8334 without restraints) Performing minimization step: 885. Total energy = 1175.0687 kcal/mol (1162.8347 without restraints) Performing minimization step: 886. Total energy = 1174.0652 kcal/mol (1161.8396 without restraints) Performing minimization step: 887. Total energy = 1173.0651 kcal/mol (1160.8479 without restraints) Performing minimization step: 888. Total energy = 1172.0686 kcal/mol (1159.8598 without restraints) Performing minimization step: 889. Total energy = 1171.0755 kcal/mol (1158.8751 without restraints) Performing minimization step: 890. Total energy = 1170.0861 kcal/mol (1157.8941 without restraints) Performing minimization step: 891. Total energy = 1169.1002 kcal/mol (1156.9166 without restraints) Performing minimization step: 892. Total energy = 1168.1175 kcal/mol (1155.9423 without restraints) Performing minimization step: 893. Total energy = 1167.1382 kcal/mol (1154.9714 without restraints) Performing minimization step: 894. Total energy = 1166.1623 kcal/mol (1154.0040 without restraints) Performing minimization step: 895. Total energy = 1165.1897 kcal/mol (1153.0398 without restraints) Performing minimization step: 896. Total energy = 1164.2206 kcal/mol (1152.0793 without restraints) Performing minimization step: 897. Total energy = 1163.2550 kcal/mol (1151.1222 without restraints) Performing minimization step: 898. Total energy = 1162.2931 kcal/mol (1150.1687 without restraints) Performing minimization step: 899. Total energy = 1161.3341 kcal/mol (1149.2181 without restraints) Performing minimization step: 900. Total energy = 1160.3784 kcal/mol (1148.2709 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 901. Total energy = 1159.4262 kcal/mol (1147.3272 without restraints) Performing minimization step: 902. Total energy = 1158.4774 kcal/mol (1146.3870 without restraints) Performing minimization step: 903. Total energy = 1157.5318 kcal/mol (1145.4499 without restraints) Performing minimization step: 904. Total energy = 1156.5898 kcal/mol (1144.5163 without restraints) Performing minimization step: 905. Total energy = 1155.6513 kcal/mol (1143.5863 without restraints) Performing minimization step: 906. Total energy = 1154.7161 kcal/mol (1142.6597 without restraints) Performing minimization step: 907. Total energy = 1153.7838 kcal/mol (1141.7359 without restraints) Performing minimization step: 908. Total energy = 1152.8550 kcal/mol (1140.8157 without restraints) Performing minimization step: 909. Total energy = 1151.9296 kcal/mol (1139.8988 without restraints) Performing minimization step: 910. Total energy = 1151.0074 kcal/mol (1138.9852 without restraints) Performing minimization step: 911. Total energy = 1150.0887 kcal/mol (1138.0750 without restraints) Performing minimization step: 912. Total energy = 1149.1731 kcal/mol (1137.1680 without restraints) Performing minimization step: 913. Total energy = 1148.2608 kcal/mol (1136.2643 without restraints) Performing minimization step: 914. Total energy = 1147.3517 kcal/mol (1135.3638 without restraints) Performing minimization step: 915. Total energy = 1146.4459 kcal/mol (1134.4665 without restraints) Performing minimization step: 916. Total energy = 1145.5434 kcal/mol (1133.5726 without restraints) Performing minimization step: 917. Total energy = 1144.6444 kcal/mol (1132.6823 without restraints) Performing minimization step: 918. Total energy = 1143.7484 kcal/mol (1131.7948 without restraints) Performing minimization step: 919. Total energy = 1142.8557 kcal/mol (1130.9108 without restraints) Performing minimization step: 920. Total energy = 1141.9660 kcal/mol (1130.0297 without restraints) Performing minimization step: 921. Total energy = 1141.0797 kcal/mol (1129.1520 without restraints) Performing minimization step: 922. Total energy = 1140.1965 kcal/mol (1128.2774 without restraints) Performing minimization step: 923. Total energy = 1139.3164 kcal/mol (1127.4060 without restraints) Performing minimization step: 924. Total energy = 1138.4395 kcal/mol (1126.5377 without restraints) Performing minimization step: 925. Total energy = 1137.5658 kcal/mol (1125.6728 without restraints) Performing minimization step: 926. Total energy = 1136.6955 kcal/mol (1124.8111 without restraints) Performing minimization step: 927. Total energy = 1135.8279 kcal/mol (1123.9520 without restraints) Performing minimization step: 928. Total energy = 1134.9636 kcal/mol (1123.0964 without restraints) Performing minimization step: 929. Total energy = 1134.1024 kcal/mol (1122.2439 without restraints) Performing minimization step: 930. Total energy = 1133.2445 kcal/mol (1121.3949 without restraints) Performing minimization step: 931. Total energy = 1132.3896 kcal/mol (1120.5485 without restraints) Performing minimization step: 932. Total energy = 1131.5377 kcal/mol (1119.7053 without restraints) Performing minimization step: 933. Total energy = 1130.6890 kcal/mol (1118.8653 without restraints) Performing minimization step: 934. Total energy = 1129.8433 kcal/mol (1118.0284 without restraints) Performing minimization step: 935. Total energy = 1129.0009 kcal/mol (1117.1946 without restraints) Performing minimization step: 936. Total energy = 1128.1614 kcal/mol (1116.3638 without restraints) Performing minimization step: 937. Total energy = 1127.3250 kcal/mol (1115.5361 without restraints) Performing minimization step: 938. Total energy = 1126.4915 kcal/mol (1114.7114 without restraints) Performing minimization step: 939. Total energy = 1125.6612 kcal/mol (1113.8899 without restraints) Performing minimization step: 940. Total energy = 1124.8341 kcal/mol (1113.0715 without restraints) Performing minimization step: 941. Total energy = 1124.0099 kcal/mol (1112.2560 without restraints) Performing minimization step: 942. Total energy = 1123.1888 kcal/mol (1111.4436 without restraints) Performing minimization step: 943. Total energy = 1122.3707 kcal/mol (1110.6343 without restraints) Performing minimization step: 944. Total energy = 1121.5556 kcal/mol (1109.8280 without restraints) Performing minimization step: 945. Total energy = 1120.7438 kcal/mol (1109.0249 without restraints) Performing minimization step: 946. Total energy = 1119.9347 kcal/mol (1108.2247 without restraints) Performing minimization step: 947. Total energy = 1119.1287 kcal/mol (1107.4274 without restraints) Performing minimization step: 948. Total energy = 1118.3255 kcal/mol (1106.6330 without restraints) Performing minimization step: 949. Total energy = 1117.5254 kcal/mol (1105.8416 without restraints) Performing minimization step: 950. Total energy = 1116.7282 kcal/mol (1105.0533 without restraints) Performing minimization step: 951. Total energy = 1115.9341 kcal/mol (1104.2680 without restraints) Performing minimization step: 952. Total energy = 1115.1432 kcal/mol (1103.4859 without restraints) Performing minimization step: 953. Total energy = 1114.3550 kcal/mol (1102.7065 without restraints) Performing minimization step: 954. Total energy = 1113.5697 kcal/mol (1101.9300 without restraints) Performing minimization step: 955. Total energy = 1112.7874 kcal/mol (1101.1565 without restraints) Performing minimization step: 956. Total energy = 1112.0079 kcal/mol (1100.3859 without restraints) Performing minimization step: 957. Total energy = 1111.2314 kcal/mol (1099.6183 without restraints) Performing minimization step: 958. Total energy = 1110.4579 kcal/mol (1098.8536 without restraints) Performing minimization step: 959. Total energy = 1109.6869 kcal/mol (1098.0915 without restraints) Performing minimization step: 960. Total energy = 1108.9188 kcal/mol (1097.3321 without restraints) Performing minimization step: 961. Total energy = 1108.1542 kcal/mol (1096.5764 without restraints) Performing minimization step: 962. Total energy = 1107.3922 kcal/mol (1095.8233 without restraints) Performing minimization step: 963. Total energy = 1106.6333 kcal/mol (1095.0734 without restraints) Performing minimization step: 964. Total energy = 1105.8771 kcal/mol (1094.3260 without restraints) Performing minimization step: 965. Total energy = 1105.1239 kcal/mol (1093.5817 without restraints) Performing minimization step: 966. Total energy = 1104.3733 kcal/mol (1092.8399 without restraints) Performing minimization step: 967. Total energy = 1103.6255 kcal/mol (1092.1010 without restraints) Performing minimization step: 968. Total energy = 1102.8806 kcal/mol (1091.3650 without restraints) Performing minimization step: 969. Total energy = 1102.1386 kcal/mol (1090.6319 without restraints) Performing minimization step: 970. Total energy = 1101.3994 kcal/mol (1089.9016 without restraints) Performing minimization step: 971. Total energy = 1100.6629 kcal/mol (1089.1740 without restraints) Performing minimization step: 972. Total energy = 1099.9293 kcal/mol (1088.4493 without restraints) Performing minimization step: 973. Total energy = 1099.1982 kcal/mol (1087.7272 without restraints) Performing minimization step: 974. Total energy = 1098.4702 kcal/mol (1087.0082 without restraints) Performing minimization step: 975. Total energy = 1097.7449 kcal/mol (1086.2917 without restraints) Performing minimization step: 976. Total energy = 1097.0221 kcal/mol (1085.5778 without restraints) Performing minimization step: 977. Total energy = 1096.3029 kcal/mol (1084.8676 without restraints) Performing minimization step: 978. Total energy = 1095.5862 kcal/mol (1084.1599 without restraints) Performing minimization step: 979. Total energy = 1094.8720 kcal/mol (1083.4546 without restraints) Performing minimization step: 980. Total energy = 1094.1606 kcal/mol (1082.7522 without restraints) Performing minimization step: 981. Total energy = 1093.4519 kcal/mol (1082.0524 without restraints) Performing minimization step: 982. Total energy = 1092.7459 kcal/mol (1081.3554 without restraints) Performing minimization step: 983. Total energy = 1092.0425 kcal/mol (1080.6610 without restraints) Performing minimization step: 984. Total energy = 1091.3418 kcal/mol (1079.9692 without restraints) Performing minimization step: 985. Total energy = 1090.6439 kcal/mol (1079.2804 without restraints) Performing minimization step: 986. Total energy = 1089.9488 kcal/mol (1078.5943 without restraints) Performing minimization step: 987. Total energy = 1089.2567 kcal/mol (1077.9114 without restraints) Performing minimization step: 988. Total energy = 1088.5672 kcal/mol (1077.2307 without restraints) Performing minimization step: 989. Total energy = 1087.8804 kcal/mol (1076.5529 without restraints) Performing minimization step: 990. Total energy = 1087.1961 kcal/mol (1075.8775 without restraints) Performing minimization step: 991. Total energy = 1086.5144 kcal/mol (1075.2048 without restraints) Performing minimization step: 992. Total energy = 1085.8352 kcal/mol (1074.5346 without restraints) Performing minimization step: 993. Total energy = 1085.1587 kcal/mol (1073.8672 without restraints) Performing minimization step: 994. Total energy = 1084.4847 kcal/mol (1073.2023 without restraints) Performing minimization step: 995. Total energy = 1083.8137 kcal/mol (1072.5403 without restraints) Performing minimization step: 996. Total energy = 1083.1451 kcal/mol (1071.8807 without restraints) Performing minimization step: 997. Total energy = 1082.4793 kcal/mol (1071.2239 without restraints) Performing minimization step: 998. Total energy = 1081.8161 kcal/mol (1070.5699 without restraints) Performing minimization step: 999. Total energy = 1081.1553 kcal/mol (1069.9180 without restraints) Performing minimization step: 1000. Total energy = 1080.4972 kcal/mol (1069.2690 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 1079.8418 kcal/mol (1068.6226 without restraints) Performing minimization step: 1002. Total energy = 1079.1889 kcal/mol (1067.9788 without restraints) Performing minimization step: 1003. Total energy = 1078.5383 kcal/mol (1067.3373 without restraints) Performing minimization step: 1004. Total energy = 1077.8907 kcal/mol (1066.6987 without restraints) Performing minimization step: 1005. Total energy = 1077.2454 kcal/mol (1066.0625 without restraints) Performing minimization step: 1006. Total energy = 1076.6029 kcal/mol (1065.4291 without restraints) Performing minimization step: 1007. Total energy = 1075.9623 kcal/mol (1064.7976 without restraints) Performing minimization step: 1008. Total energy = 1075.3253 kcal/mol (1064.1696 without restraints) Performing minimization step: 1009. Total energy = 1074.6903 kcal/mol (1063.5437 without restraints) Performing minimization step: 1010. Total energy = 1074.0574 kcal/mol (1062.9200 without restraints) Performing minimization step: 1011. Total energy = 1073.4275 kcal/mol (1062.2992 without restraints) Performing minimization step: 1012. Total energy = 1072.8002 kcal/mol (1061.6809 without restraints) Performing minimization step: 1013. Total energy = 1072.1753 kcal/mol (1061.0651 without restraints) Performing minimization step: 1014. Total energy = 1071.5528 kcal/mol (1060.4518 without restraints) Performing minimization step: 1015. Total energy = 1070.9329 kcal/mol (1059.8411 without restraints) Performing minimization step: 1016. Total energy = 1070.3158 kcal/mol (1059.2330 without restraints) Performing minimization step: 1017. Total energy = 1069.7009 kcal/mol (1058.6273 without restraints) Performing minimization step: 1018. Total energy = 1069.0883 kcal/mol (1058.0237 without restraints) Performing minimization step: 1019. Total energy = 1068.4785 kcal/mol (1057.4231 without restraints) Performing minimization step: 1020. Total energy = 1067.8712 kcal/mol (1056.8251 without restraints) Performing minimization step: 1021. Total energy = 1067.2660 kcal/mol (1056.2289 without restraints) Performing minimization step: 1022. Total energy = 1066.6634 kcal/mol (1055.6354 without restraints) Performing minimization step: 1023. Total energy = 1066.0631 kcal/mol (1055.0443 without restraints) Performing minimization step: 1024. Total energy = 1065.4653 kcal/mol (1054.4557 without restraints) Performing minimization step: 1025. Total energy = 1064.8701 kcal/mol (1053.8696 without restraints) Performing minimization step: 1026. Total energy = 1064.2775 kcal/mol (1053.2861 without restraints) Performing minimization step: 1027. Total energy = 1063.6869 kcal/mol (1052.7047 without restraints) Performing minimization step: 1028. Total energy = 1063.0989 kcal/mol (1052.1259 without restraints) Performing minimization step: 1029. Total energy = 1062.5127 kcal/mol (1051.5487 without restraints) Performing minimization step: 1030. Total energy = 1061.9291 kcal/mol (1050.9744 without restraints) Performing minimization step: 1031. Total energy = 1061.3480 kcal/mol (1050.4025 without restraints) Performing minimization step: 1032. Total energy = 1060.7692 kcal/mol (1049.8328 without restraints) Performing minimization step: 1033. Total energy = 1060.1925 kcal/mol (1049.2654 without restraints) Performing minimization step: 1034. Total energy = 1059.6189 kcal/mol (1048.7009 without restraints) Performing minimization step: 1035. Total energy = 1059.0472 kcal/mol (1048.1385 without restraints) Performing minimization step: 1036. Total energy = 1058.4779 kcal/mol (1047.5784 without restraints) Performing minimization step: 1037. Total energy = 1057.9109 kcal/mol (1047.0206 without restraints) Performing minimization step: 1038. Total energy = 1057.3462 kcal/mol (1046.4651 without restraints) Performing minimization step: 1039. Total energy = 1056.7834 kcal/mol (1045.9115 without restraints) Performing minimization step: 1040. Total energy = 1056.2234 kcal/mol (1045.3607 without restraints) Performing minimization step: 1041. Total energy = 1055.6658 kcal/mol (1044.8123 without restraints) Performing minimization step: 1042. Total energy = 1055.1103 kcal/mol (1044.2659 without restraints) Performing minimization step: 1043. Total energy = 1054.5570 kcal/mol (1043.7220 without restraints) Performing minimization step: 1044. Total energy = 1054.0061 kcal/mol (1043.1803 without restraints) Performing minimization step: 1045. Total energy = 1053.4575 kcal/mol (1042.6409 without restraints) Performing minimization step: 1046. Total energy = 1052.9112 kcal/mol (1042.1038 without restraints) Performing minimization step: 1047. Total energy = 1052.3676 kcal/mol (1041.5694 without restraints) Performing minimization step: 1048. Total energy = 1051.8256 kcal/mol (1041.0367 without restraints) Performing minimization step: 1049. Total energy = 1051.2862 kcal/mol (1040.5066 without restraints) Performing minimization step: 1050. Total energy = 1050.7489 kcal/mol (1039.9785 without restraints) Performing minimization step: 1051. Total energy = 1050.2136 kcal/mol (1039.4524 without restraints) Performing minimization step: 1052. Total energy = 1049.6805 kcal/mol (1038.9285 without restraints) Performing minimization step: 1053. Total energy = 1049.1498 kcal/mol (1038.4071 without restraints) Performing minimization step: 1054. Total energy = 1048.6213 kcal/mol (1037.8878 without restraints) Performing minimization step: 1055. Total energy = 1048.0949 kcal/mol (1037.3708 without restraints) Performing minimization step: 1056. Total energy = 1047.5708 kcal/mol (1036.8559 without restraints) Performing minimization step: 1057. Total energy = 1047.0489 kcal/mol (1036.3433 without restraints) Performing minimization step: 1058. Total energy = 1046.5293 kcal/mol (1035.8331 without restraints) Performing minimization step: 1059. Total energy = 1046.0119 kcal/mol (1035.3248 without restraints) Performing minimization step: 1060. Total energy = 1045.4964 kcal/mol (1034.8186 without restraints) Performing minimization step: 1061. Total energy = 1044.9830 kcal/mol (1034.3144 without restraints) Performing minimization step: 1062. Total energy = 1044.4724 kcal/mol (1033.8132 without restraints) Performing minimization step: 1063. Total energy = 1043.9632 kcal/mol (1033.3132 without restraints) Performing minimization step: 1064. Total energy = 1043.4564 kcal/mol (1032.8157 without restraints) Performing minimization step: 1065. Total energy = 1042.9516 kcal/mol (1032.3202 without restraints) Performing minimization step: 1066. Total energy = 1042.4491 kcal/mol (1031.8270 without restraints) Performing minimization step: 1067. Total energy = 1041.9486 kcal/mol (1031.3358 without restraints) Performing minimization step: 1068. Total energy = 1041.4505 kcal/mol (1030.8470 without restraints) Performing minimization step: 1069. Total energy = 1040.9547 kcal/mol (1030.3606 without restraints) Performing minimization step: 1070. Total energy = 1040.4606 kcal/mol (1029.8756 without restraints) Performing minimization step: 1071. Total energy = 1039.9682 kcal/mol (1029.3926 without restraints) Performing minimization step: 1072. Total energy = 1039.4788 kcal/mol (1028.9124 without restraints) Performing minimization step: 1073. Total energy = 1038.9907 kcal/mol (1028.4338 without restraints) Performing minimization step: 1074. Total energy = 1038.5048 kcal/mol (1027.9571 without restraints) Performing minimization step: 1075. Total energy = 1038.0210 kcal/mol (1027.4827 without restraints) Performing minimization step: 1076. Total energy = 1037.5393 kcal/mol (1027.0102 without restraints) Performing minimization step: 1077. Total energy = 1037.0598 kcal/mol (1026.5400 without restraints) Performing minimization step: 1078. Total energy = 1036.5821 kcal/mol (1026.0717 without restraints) Performing minimization step: 1079. Total energy = 1036.1064 kcal/mol (1025.6053 without restraints) Performing minimization step: 1080. Total energy = 1035.6327 kcal/mol (1025.1410 without restraints) Performing minimization step: 1081. Total energy = 1035.1611 kcal/mol (1024.6786 without restraints) Performing minimization step: 1082. Total energy = 1034.6917 kcal/mol (1024.2186 without restraints) Performing minimization step: 1083. Total energy = 1034.2243 kcal/mol (1023.7605 without restraints) Performing minimization step: 1084. Total energy = 1033.7585 kcal/mol (1023.3041 without restraints) Performing minimization step: 1085. Total energy = 1033.2949 kcal/mol (1022.8498 without restraints) Performing minimization step: 1086. Total energy = 1032.8332 kcal/mol (1022.3974 without restraints) Performing minimization step: 1087. Total energy = 1032.3735 kcal/mol (1021.9471 without restraints) Performing minimization step: 1088. Total energy = 1031.9156 kcal/mol (1021.4984 without restraints) Performing minimization step: 1089. Total energy = 1031.4597 kcal/mol (1021.0520 without restraints) Performing minimization step: 1090. Total energy = 1031.0058 kcal/mol (1020.6074 without restraints) Performing minimization step: 1091. Total energy = 1030.5537 kcal/mol (1020.1646 without restraints) Performing minimization step: 1092. Total energy = 1030.1037 kcal/mol (1019.7240 without restraints) Performing minimization step: 1093. Total energy = 1029.6554 kcal/mol (1019.2851 without restraints) Performing minimization step: 1094. Total energy = 1029.2093 kcal/mol (1018.8483 without restraints) Performing minimization step: 1095. Total energy = 1028.7650 kcal/mol (1018.4134 without restraints) Performing minimization step: 1096. Total energy = 1028.3227 kcal/mol (1017.9805 without restraints) Performing minimization step: 1097. Total energy = 1027.8820 kcal/mol (1017.5492 without restraints) Performing minimization step: 1098. Total energy = 1027.4437 kcal/mol (1017.1202 without restraints) Performing minimization step: 1099. Total energy = 1027.0074 kcal/mol (1016.6933 without restraints) Performing minimization step: 1100. Total energy = 1026.5720 kcal/mol (1016.2672 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 1026.1390 kcal/mol (1015.8436 without restraints) Performing minimization step: 1102. Total energy = 1025.7084 kcal/mol (1015.4226 without restraints) Performing minimization step: 1103. Total energy = 1025.2793 kcal/mol (1015.0026 without restraints) Performing minimization step: 1104. Total energy = 1024.8520 kcal/mol (1014.5847 without restraints) Performing minimization step: 1105. Total energy = 1024.4265 kcal/mol (1014.1686 without restraints) Performing minimization step: 1106. Total energy = 1024.0026 kcal/mol (1013.7541 without restraints) Performing minimization step: 1107. Total energy = 1023.5808 kcal/mol (1013.3416 without restraints) Performing minimization step: 1108. Total energy = 1023.1615 kcal/mol (1012.9318 without restraints) Performing minimization step: 1109. Total energy = 1022.7432 kcal/mol (1012.5228 without restraints) Performing minimization step: 1110. Total energy = 1022.3267 kcal/mol (1012.1156 without restraints) Performing minimization step: 1111. Total energy = 1021.9120 kcal/mol (1011.7104 without restraints) Performing minimization step: 1112. Total energy = 1021.4991 kcal/mol (1011.3068 without restraints) Performing minimization step: 1113. Total energy = 1021.0880 kcal/mol (1010.9052 without restraints) Performing minimization step: 1114. Total energy = 1020.6789 kcal/mol (1010.5054 without restraints) Performing minimization step: 1115. Total energy = 1020.2716 kcal/mol (1010.1076 without restraints) Performing minimization step: 1116. Total energy = 1019.8660 kcal/mol (1009.7114 without restraints) Performing minimization step: 1117. Total energy = 1019.4620 kcal/mol (1009.3167 without restraints) Performing minimization step: 1118. Total energy = 1019.0598 kcal/mol (1008.9240 without restraints) Performing minimization step: 1119. Total energy = 1018.6593 kcal/mol (1008.5329 without restraints) Performing minimization step: 1120. Total energy = 1018.2606 kcal/mol (1008.1436 without restraints) Performing minimization step: 1121. Total energy = 1017.8637 kcal/mol (1007.7561 without restraints) Performing minimization step: 1122. Total energy = 1017.4685 kcal/mol (1007.3704 without restraints) Performing minimization step: 1123. Total energy = 1017.0752 kcal/mol (1006.9865 without restraints) Performing minimization step: 1124. Total energy = 1016.6834 kcal/mol (1006.6040 without restraints) Performing minimization step: 1125. Total energy = 1016.2931 kcal/mol (1006.2232 without restraints) Performing minimization step: 1126. Total energy = 1015.9050 kcal/mol (1005.8445 without restraints) Performing minimization step: 1127. Total energy = 1015.5184 kcal/mol (1005.4673 without restraints) Performing minimization step: 1128. Total energy = 1015.1332 kcal/mol (1005.0914 without restraints) Performing minimization step: 1129. Total energy = 1014.7499 kcal/mol (1004.7176 without restraints) Performing minimization step: 1130. Total energy = 1014.3683 kcal/mol (1004.3454 without restraints) Performing minimization step: 1131. Total energy = 1013.9883 kcal/mol (1003.9749 without restraints) Performing minimization step: 1132. Total energy = 1013.6100 kcal/mol (1003.6060 without restraints) Performing minimization step: 1133. Total energy = 1013.2334 kcal/mol (1003.2388 without restraints) Performing minimization step: 1134. Total energy = 1012.8584 kcal/mol (1002.8732 without restraints) Performing minimization step: 1135. Total energy = 1012.4850 kcal/mol (1002.5092 without restraints) Performing minimization step: 1136. Total energy = 1012.1133 kcal/mol (1002.1469 without restraints) Performing minimization step: 1137. Total energy = 1011.7432 kcal/mol (1001.7863 without restraints) Performing minimization step: 1138. Total energy = 1011.3748 kcal/mol (1001.4273 without restraints) Performing minimization step: 1139. Total energy = 1011.0080 kcal/mol (1001.0699 without restraints) Performing minimization step: 1140. Total energy = 1010.6427 kcal/mol (1000.7141 without restraints) Performing minimization step: 1141. Total energy = 1010.2787 kcal/mol (1000.3594 without restraints) Performing minimization step: 1142. Total energy = 1009.9166 kcal/mol (1000.0068 without restraints) Performing minimization step: 1143. Total energy = 1009.5561 kcal/mol (999.6556 without restraints) Performing minimization step: 1144. Total energy = 1009.1971 kcal/mol (999.3062 without restraints) Performing minimization step: 1145. Total energy = 1008.8400 kcal/mol (998.9585 without restraints) Performing minimization step: 1146. Total energy = 1008.4841 kcal/mol (998.6120 without restraints) Performing minimization step: 1147. Total energy = 1008.1298 kcal/mol (998.2672 without restraints) Performing minimization step: 1148. Total energy = 1007.7770 kcal/mol (997.9238 without restraints) Performing minimization step: 1149. Total energy = 1007.4259 kcal/mol (997.5822 without restraints) Performing minimization step: 1150. Total energy = 1007.0763 kcal/mol (997.2420 without restraints) Performing minimization step: 1151. Total energy = 1006.7283 kcal/mol (996.9035 without restraints) Performing minimization step: 1152. Total energy = 1006.3818 kcal/mol (996.5665 without restraints) Performing minimization step: 1153. Total energy = 1006.0367 kcal/mol (996.2308 without restraints) Performing minimization step: 1154. Total energy = 1005.6933 kcal/mol (995.8968 without restraints) Performing minimization step: 1155. Total energy = 1005.3516 kcal/mol (995.5645 without restraints) Performing minimization step: 1156. Total energy = 1005.0112 kcal/mol (995.2336 without restraints) Performing minimization step: 1157. Total energy = 1004.6721 kcal/mol (994.9039 without restraints) Performing minimization step: 1158. Total energy = 1004.3347 kcal/mol (994.5760 without restraints) Performing minimization step: 1159. Total energy = 1003.9988 kcal/mol (994.2495 without restraints) Performing minimization step: 1160. Total energy = 1003.6644 kcal/mol (993.9247 without restraints) Performing minimization step: 1161. Total energy = 1003.3317 kcal/mol (993.6013 without restraints) Performing minimization step: 1162. Total energy = 1003.0003 kcal/mol (993.2795 without restraints) Performing minimization step: 1163. Total energy = 1002.6704 kcal/mol (992.9588 without restraints) Performing minimization step: 1164. Total energy = 1002.3418 kcal/mol (992.6398 without restraints) Performing minimization step: 1165. Total energy = 1002.0147 kcal/mol (992.3221 without restraints) Performing minimization step: 1166. Total energy = 1001.6890 kcal/mol (992.0060 without restraints) Performing minimization step: 1167. Total energy = 1001.3650 kcal/mol (991.6913 without restraints) Performing minimization step: 1168. Total energy = 1001.0422 kcal/mol (991.3780 without restraints) Performing minimization step: 1169. Total energy = 1000.7208 kcal/mol (991.0661 without restraints) Performing minimization step: 1170. Total energy = 1000.4008 kcal/mol (990.7556 without restraints) Performing minimization step: 1171. Total energy = 1000.0821 kcal/mol (990.4462 without restraints) Performing minimization step: 1172. Total energy = 999.7649 kcal/mol (990.1386 without restraints) Performing minimization step: 1173. Total energy = 999.4492 kcal/mol (989.8323 without restraints) Performing minimization step: 1174. Total energy = 999.1348 kcal/mol (989.5274 without restraints) Performing minimization step: 1175. Total energy = 998.8219 kcal/mol (989.2239 without restraints) Performing minimization step: 1176. Total energy = 998.5101 kcal/mol (988.9216 without restraints) Performing minimization step: 1177. Total energy = 998.2000 kcal/mol (988.6209 without restraints) Performing minimization step: 1178. Total energy = 997.8910 kcal/mol (988.3214 without restraints) Performing minimization step: 1179. Total energy = 997.5835 kcal/mol (988.0235 without restraints) Performing minimization step: 1180. Total energy = 997.2775 kcal/mol (987.7269 without restraints) Performing minimization step: 1181. Total energy = 996.9728 kcal/mol (987.4316 without restraints) Performing minimization step: 1182. Total energy = 996.6696 kcal/mol (987.1379 without restraints) Performing minimization step: 1183. Total energy = 996.3676 kcal/mol (986.8454 without restraints) Performing minimization step: 1184. Total energy = 996.0670 kcal/mol (986.5543 without restraints) Performing minimization step: 1185. Total energy = 995.7680 kcal/mol (986.2647 without restraints) Performing minimization step: 1186. Total energy = 995.4699 kcal/mol (985.9761 without restraints) Performing minimization step: 1187. Total energy = 995.1734 kcal/mol (985.6890 without restraints) Performing minimization step: 1188. Total energy = 994.8783 kcal/mol (985.4034 without restraints) Performing minimization step: 1189. Total energy = 994.5839 kcal/mol (985.1185 without restraints) Performing minimization step: 1190. Total energy = 994.2912 kcal/mol (984.8352 without restraints) Performing minimization step: 1191. Total energy = 993.9997 kcal/mol (984.5532 without restraints) Performing minimization step: 1192. Total energy = 993.7095 kcal/mol (984.2725 without restraints) Performing minimization step: 1193. Total energy = 993.4208 kcal/mol (983.9932 without restraints) Performing minimization step: 1194. Total energy = 993.1327 kcal/mol (983.7146 without restraints) Performing minimization step: 1195. Total energy = 992.8463 kcal/mol (983.4377 without restraints) Performing minimization step: 1196. Total energy = 992.5612 kcal/mol (983.1621 without restraints) Performing minimization step: 1197. Total energy = 992.2774 kcal/mol (982.8877 without restraints) Performing minimization step: 1198. Total energy = 991.9949 kcal/mol (982.6148 without restraints) Performing minimization step: 1199. Total energy = 991.7138 kcal/mol (982.3432 without restraints) Performing minimization step: 1200. Total energy = 991.4338 kcal/mol (982.0725 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 991.1549 kcal/mol (981.8031 without restraints) Performing minimization step: 1202. Total energy = 990.8773 kcal/mol (981.5350 without restraints) Performing minimization step: 1203. Total energy = 990.6007 kcal/mol (981.2678 without restraints) Performing minimization step: 1204. Total energy = 990.3258 kcal/mol (981.0026 without restraints) Performing minimization step: 1205. Total energy = 990.0521 kcal/mol (980.7382 without restraints) Performing minimization step: 1206. Total energy = 989.7794 kcal/mol (980.4750 without restraints) Performing minimization step: 1207. Total energy = 989.5080 kcal/mol (980.2131 without restraints) Performing minimization step: 1208. Total energy = 989.2377 kcal/mol (979.9523 without restraints) Performing minimization step: 1209. Total energy = 988.9684 kcal/mol (979.6926 without restraints) Performing minimization step: 1210. Total energy = 988.7006 kcal/mol (979.4341 without restraints) Performing minimization step: 1211. Total energy = 988.4342 kcal/mol (979.1772 without restraints) Performing minimization step: 1212. Total energy = 988.1687 kcal/mol (978.9212 without restraints) Performing minimization step: 1213. Total energy = 987.9043 kcal/mol (978.6662 without restraints) Performing minimization step: 1214. Total energy = 987.6411 kcal/mol (978.4125 without restraints) Performing minimization step: 1215. Total energy = 987.3788 kcal/mol (978.1597 without restraints) Performing minimization step: 1216. Total energy = 987.1177 kcal/mol (977.9081 without restraints) Performing minimization step: 1217. Total energy = 986.8583 kcal/mol (977.6584 without restraints) Performing minimization step: 1218. Total energy = 986.6002 kcal/mol (977.4097 without restraints) Performing minimization step: 1219. Total energy = 986.3429 kcal/mol (977.1618 without restraints) Performing minimization step: 1220. Total energy = 986.0866 kcal/mol (976.9150 without restraints) Performing minimization step: 1221. Total energy = 985.8315 kcal/mol (976.6693 without restraints) Performing minimization step: 1222. Total energy = 985.5774 kcal/mol (976.4247 without restraints) Performing minimization step: 1223. Total energy = 985.3247 kcal/mol (976.1815 without restraints) Performing minimization step: 1224. Total energy = 985.0731 kcal/mol (975.9393 without restraints) Performing minimization step: 1225. Total energy = 984.8224 kcal/mol (975.6979 without restraints) Performing minimization step: 1226. Total energy = 984.5726 kcal/mol (975.4578 without restraints) Performing minimization step: 1227. Total energy = 984.3241 kcal/mol (975.2188 without restraints) Performing minimization step: 1228. Total energy = 984.0766 kcal/mol (974.9808 without restraints) Performing minimization step: 1229. Total energy = 983.8303 kcal/mol (974.7440 without restraints) Performing minimization step: 1230. Total energy = 983.5852 kcal/mol (974.5084 without restraints) Performing minimization step: 1231. Total energy = 983.3412 kcal/mol (974.2739 without restraints) Performing minimization step: 1232. Total energy = 983.0982 kcal/mol (974.0403 without restraints) Performing minimization step: 1233. Total energy = 982.8564 kcal/mol (973.8080 without restraints) Performing minimization step: 1234. Total energy = 982.6155 kcal/mol (973.5766 without restraints) Performing minimization step: 1235. Total energy = 982.3758 kcal/mol (973.3464 without restraints) Performing minimization step: 1236. Total energy = 982.1369 kcal/mol (973.1169 without restraints) Performing minimization step: 1237. Total energy = 981.8993 kcal/mol (972.8888 without restraints) Performing minimization step: 1238. Total energy = 981.6625 kcal/mol (972.6615 without restraints) Performing minimization step: 1239. Total energy = 981.4270 kcal/mol (972.4355 without restraints) Performing minimization step: 1240. Total energy = 981.1924 kcal/mol (972.2104 without restraints) Performing minimization step: 1241. Total energy = 980.9590 kcal/mol (971.9865 without restraints) Performing minimization step: 1242. Total energy = 980.7269 kcal/mol (971.7639 without restraints) Performing minimization step: 1243. Total energy = 980.4952 kcal/mol (971.5416 without restraints) Performing minimization step: 1244. Total energy = 980.2647 kcal/mol (971.3206 without restraints) Performing minimization step: 1245. Total energy = 980.0352 kcal/mol (971.1006 without restraints) Performing minimization step: 1246. Total energy = 979.8067 kcal/mol (970.8816 without restraints) Performing minimization step: 1247. Total energy = 979.5796 kcal/mol (970.6640 without restraints) Performing minimization step: 1248. Total energy = 979.3531 kcal/mol (970.4470 without restraints) Performing minimization step: 1249. Total energy = 979.1275 kcal/mol (970.2309 without restraints) Performing minimization step: 1250. Total energy = 978.9034 kcal/mol (970.0163 without restraints) Performing minimization step: 1251. Total energy = 978.6797 kcal/mol (969.8020 without restraints) Performing minimization step: 1252. Total energy = 978.4573 kcal/mol (969.5891 without restraints) Performing minimization step: 1253. Total energy = 978.2358 kcal/mol (969.3771 without restraints) Performing minimization step: 1254. Total energy = 978.0153 kcal/mol (969.1661 without restraints) Performing minimization step: 1255. Total energy = 977.7958 kcal/mol (968.9561 without restraints) Performing minimization step: 1256. Total energy = 977.5768 kcal/mol (968.7466 without restraints) Performing minimization step: 1257. Total energy = 977.3592 kcal/mol (968.5384 without restraints) Performing minimization step: 1258. Total energy = 977.1423 kcal/mol (968.3310 without restraints) Performing minimization step: 1259. Total energy = 976.9264 kcal/mol (968.1247 without restraints) Performing minimization step: 1260. Total energy = 976.7115 kcal/mol (967.9192 without restraints) Performing minimization step: 1261. Total energy = 976.4975 kcal/mol (967.7147 without restraints) Performing minimization step: 1262. Total energy = 976.2845 kcal/mol (967.5111 without restraints) Performing minimization step: 1263. Total energy = 976.0724 kcal/mol (967.3085 without restraints) Performing minimization step: 1264. Total energy = 975.8608 kcal/mol (967.1065 without restraints) Performing minimization step: 1265. Total energy = 975.6506 kcal/mol (966.9057 without restraints) Performing minimization step: 1266. Total energy = 975.4408 kcal/mol (966.7054 without restraints) Performing minimization step: 1267. Total energy = 975.2325 kcal/mol (966.5066 without restraints) Performing minimization step: 1268. Total energy = 975.0249 kcal/mol (966.3085 without restraints) Performing minimization step: 1269. Total energy = 974.8183 kcal/mol (966.1113 without restraints) Performing minimization step: 1270. Total energy = 974.6125 kcal/mol (965.9150 without restraints) Performing minimization step: 1271. Total energy = 974.4078 kcal/mol (965.7198 without restraints) Performing minimization step: 1272. Total energy = 974.2038 kcal/mol (965.5252 without restraints) Performing minimization step: 1273. Total energy = 974.0007 kcal/mol (965.3316 without restraints) Performing minimization step: 1274. Total energy = 973.7984 kcal/mol (965.1388 without restraints) Performing minimization step: 1275. Total energy = 973.5970 kcal/mol (964.9469 without restraints) Performing minimization step: 1276. Total energy = 973.3967 kcal/mol (964.7561 without restraints) Performing minimization step: 1277. Total energy = 973.1971 kcal/mol (964.5660 without restraints) Performing minimization step: 1278. Total energy = 972.9983 kcal/mol (964.3765 without restraints) Performing minimization step: 1279. Total energy = 972.8003 kcal/mol (964.1881 without restraints) Performing minimization step: 1280. Total energy = 972.6031 kcal/mol (964.0004 without restraints) Performing minimization step: 1281. Total energy = 972.4068 kcal/mol (963.8136 without restraints) Performing minimization step: 1282. Total energy = 972.2114 kcal/mol (963.6277 without restraints) Performing minimization step: 1283. Total energy = 972.0172 kcal/mol (963.4428 without restraints) Performing minimization step: 1284. Total energy = 971.8235 kcal/mol (963.2586 without restraints) Performing minimization step: 1285. Total energy = 971.6305 kcal/mol (963.0751 without restraints) Performing minimization step: 1286. Total energy = 971.4384 kcal/mol (962.8925 without restraints) Performing minimization step: 1287. Total energy = 971.2474 kcal/mol (962.7110 without restraints) Performing minimization step: 1288. Total energy = 971.0570 kcal/mol (962.5301 without restraints) Performing minimization step: 1289. Total energy = 970.8674 kcal/mol (962.3499 without restraints) Performing minimization step: 1290. Total energy = 970.6787 kcal/mol (962.1706 without restraints) Performing minimization step: 1291. Total energy = 970.4906 kcal/mol (961.9920 without restraints) Performing minimization step: 1292. Total energy = 970.3033 kcal/mol (961.8141 without restraints) Performing minimization step: 1293. Total energy = 970.1165 kcal/mol (961.6369 without restraints) Performing minimization step: 1294. Total energy = 969.9313 kcal/mol (961.4611 without restraints) Performing minimization step: 1295. Total energy = 969.7464 kcal/mol (961.2856 without restraints) Performing minimization step: 1296. Total energy = 969.5622 kcal/mol (961.1109 without restraints) Performing minimization step: 1297. Total energy = 969.3786 kcal/mol (960.9367 without restraints) Performing minimization step: 1298. Total energy = 969.1962 kcal/mol (960.7638 without restraints) Performing minimization step: 1299. Total energy = 969.0144 kcal/mol (960.5914 without restraints) Performing minimization step: 1300. Total energy = 968.8336 kcal/mol (960.4201 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 968.6532 kcal/mol (960.2491 without restraints) Performing minimization step: 1302. Total energy = 968.4736 kcal/mol (960.0790 without restraints) Performing minimization step: 1303. Total energy = 968.2949 kcal/mol (959.9097 without restraints) Performing minimization step: 1304. Total energy = 968.1171 kcal/mol (959.7413 without restraints) Performing minimization step: 1305. Total energy = 967.9398 kcal/mol (959.5735 without restraints) Performing minimization step: 1306. Total energy = 967.7634 kcal/mol (959.4065 without restraints) Performing minimization step: 1307. Total energy = 967.5877 kcal/mol (959.2403 without restraints) Performing minimization step: 1308. Total energy = 967.4125 kcal/mol (959.0746 without restraints) Performing minimization step: 1309. Total energy = 967.2381 kcal/mol (958.9096 without restraints) Performing minimization step: 1310. Total energy = 967.0648 kcal/mol (958.7458 without restraints) Performing minimization step: 1311. Total energy = 966.8922 kcal/mol (958.5825 without restraints) Performing minimization step: 1312. Total energy = 966.7199 kcal/mol (958.4197 without restraints) Performing minimization step: 1313. Total energy = 966.5484 kcal/mol (958.2576 without restraints) Performing minimization step: 1314. Total energy = 966.3775 kcal/mol (958.0961 without restraints) Performing minimization step: 1315. Total energy = 966.2074 kcal/mol (957.9354 without restraints) Performing minimization step: 1316. Total energy = 966.0379 kcal/mol (957.7754 without restraints) Performing minimization step: 1317. Total energy = 965.8692 kcal/mol (957.6161 without restraints) Performing minimization step: 1318. Total energy = 965.7012 kcal/mol (957.4575 without restraints) Performing minimization step: 1319. Total energy = 965.5338 kcal/mol (957.2995 without restraints) Performing minimization step: 1320. Total energy = 965.3672 kcal/mol (957.1422 without restraints) Performing minimization step: 1321. Total energy = 965.2008 kcal/mol (956.9853 without restraints) Performing minimization step: 1322. Total energy = 965.0354 kcal/mol (956.8293 without restraints) Performing minimization step: 1323. Total energy = 964.8707 kcal/mol (956.6740 without restraints) Performing minimization step: 1324. Total energy = 964.7067 kcal/mol (956.5194 without restraints) Performing minimization step: 1325. Total energy = 964.5434 kcal/mol (956.3656 without restraints) Performing minimization step: 1326. Total energy = 964.3810 kcal/mol (956.2125 without restraints) Performing minimization step: 1327. Total energy = 964.2192 kcal/mol (956.0601 without restraints) Performing minimization step: 1328. Total energy = 964.0578 kcal/mol (955.9081 without restraints) Performing minimization step: 1329. Total energy = 963.8970 kcal/mol (955.7567 without restraints) Performing minimization step: 1330. Total energy = 963.7369 kcal/mol (955.6060 without restraints) Performing minimization step: 1331. Total energy = 963.5774 kcal/mol (955.4559 without restraints) Performing minimization step: 1332. Total energy = 963.4186 kcal/mol (955.3064 without restraints) Performing minimization step: 1333. Total energy = 963.2605 kcal/mol (955.1576 without restraints) Performing minimization step: 1334. Total energy = 963.1028 kcal/mol (955.0092 without restraints) Performing minimization step: 1335. Total energy = 962.9457 kcal/mol (954.8616 without restraints) Performing minimization step: 1336. Total energy = 962.7894 kcal/mol (954.7147 without restraints) Performing minimization step: 1337. Total energy = 962.6337 kcal/mol (954.5683 without restraints) Performing minimization step: 1338. Total energy = 962.4785 kcal/mol (954.4225 without restraints) Performing minimization step: 1339. Total energy = 962.3241 kcal/mol (954.2775 without restraints) Performing minimization step: 1340. Total energy = 962.1706 kcal/mol (954.1333 without restraints) Performing minimization step: 1341. Total energy = 962.0172 kcal/mol (953.9893 without restraints) Performing minimization step: 1342. Total energy = 961.8645 kcal/mol (953.8458 without restraints) Performing minimization step: 1343. Total energy = 961.7124 kcal/mol (953.7033 without restraints) Performing minimization step: 1344. Total energy = 961.5609 kcal/mol (953.5610 without restraints) Performing minimization step: 1345. Total energy = 961.4101 kcal/mol (953.4196 without restraints) Performing minimization step: 1346. Total energy = 961.2598 kcal/mol (953.2785 without restraints) Performing minimization step: 1347. Total energy = 961.1100 kcal/mol (953.1380 without restraints) Performing minimization step: 1348. Total energy = 960.9606 kcal/mol (952.9980 without restraints) Performing minimization step: 1349. Total energy = 960.8121 kcal/mol (952.8588 without restraints) Performing minimization step: 1350. Total energy = 960.6637 kcal/mol (952.7197 without restraints) Performing minimization step: 1351. Total energy = 960.5166 kcal/mol (952.5819 without restraints) Performing minimization step: 1352. Total energy = 960.3696 kcal/mol (952.4441 without restraints) Performing minimization step: 1353. Total energy = 960.2233 kcal/mol (952.3071 without restraints) Performing minimization step: 1354. Total energy = 960.0773 kcal/mol (952.1705 without restraints) Performing minimization step: 1355. Total energy = 959.9322 kcal/mol (952.0346 without restraints) Performing minimization step: 1356. Total energy = 959.7877 kcal/mol (951.8995 without restraints) Performing minimization step: 1357. Total energy = 959.6435 kcal/mol (951.7645 without restraints) Performing minimization step: 1358. Total energy = 959.5002 kcal/mol (951.6304 without restraints) Performing minimization step: 1359. Total energy = 959.3572 kcal/mol (951.4967 without restraints) Performing minimization step: 1360. Total energy = 959.2147 kcal/mol (951.3636 without restraints) Performing minimization step: 1361. Total energy = 959.0723 kcal/mol (951.2303 without restraints) Performing minimization step: 1362. Total energy = 958.9306 kcal/mol (951.0979 without restraints) Performing minimization step: 1363. Total energy = 958.7896 kcal/mol (950.9662 without restraints) Performing minimization step: 1364. Total energy = 958.6490 kcal/mol (950.8349 without restraints) Performing minimization step: 1365. Total energy = 958.5090 kcal/mol (950.7040 without restraints) Performing minimization step: 1366. Total energy = 958.3694 kcal/mol (950.5736 without restraints) Performing minimization step: 1367. Total energy = 958.2308 kcal/mol (950.4442 without restraints) Performing minimization step: 1368. Total energy = 958.0925 kcal/mol (950.3152 without restraints) Performing minimization step: 1369. Total energy = 957.9544 kcal/mol (950.1863 without restraints) Performing minimization step: 1370. Total energy = 957.8168 kcal/mol (950.0579 without restraints) Performing minimization step: 1371. Total energy = 957.6798 kcal/mol (949.9302 without restraints) Performing minimization step: 1372. Total energy = 957.5433 kcal/mol (949.8028 without restraints) Performing minimization step: 1373. Total energy = 957.4074 kcal/mol (949.6761 without restraints) Performing minimization step: 1374. Total energy = 957.2719 kcal/mol (949.5497 without restraints) Performing minimization step: 1375. Total energy = 957.1368 kcal/mol (949.4238 without restraints) Performing minimization step: 1376. Total energy = 957.0020 kcal/mol (949.2981 without restraints) Performing minimization step: 1377. Total energy = 956.8675 kcal/mol (949.1729 without restraints) Performing minimization step: 1378. Total energy = 956.7337 kcal/mol (949.0483 without restraints) Performing minimization step: 1379. Total energy = 956.6006 kcal/mol (948.9243 without restraints) Performing minimization step: 1380. Total energy = 956.4680 kcal/mol (948.8008 without restraints) Performing minimization step: 1381. Total energy = 956.3354 kcal/mol (948.6774 without restraints) Performing minimization step: 1382. Total energy = 956.2035 kcal/mol (948.5544 without restraints) Performing minimization step: 1383. Total energy = 956.0719 kcal/mol (948.4322 without restraints) Performing minimization step: 1384. Total energy = 955.9407 kcal/mol (948.3101 without restraints) Performing minimization step: 1385. Total energy = 955.8102 kcal/mol (948.1886 without restraints) Performing minimization step: 1386. Total energy = 955.6802 kcal/mol (948.0677 without restraints) Performing minimization step: 1387. Total energy = 955.5506 kcal/mol (947.9474 without restraints) Performing minimization step: 1388. Total energy = 955.4216 kcal/mol (947.8274 without restraints) Performing minimization step: 1389. Total energy = 955.2930 kcal/mol (947.7078 without restraints) Performing minimization step: 1390. Total energy = 955.1648 kcal/mol (947.5887 without restraints) Performing minimization step: 1391. Total energy = 955.0369 kcal/mol (947.4699 without restraints) Performing minimization step: 1392. Total energy = 954.9095 kcal/mol (947.3515 without restraints) Performing minimization step: 1393. Total energy = 954.7825 kcal/mol (947.2335 without restraints) Performing minimization step: 1394. Total energy = 954.6559 kcal/mol (947.1160 without restraints) Performing minimization step: 1395. Total energy = 954.5299 kcal/mol (946.9991 without restraints) Performing minimization step: 1396. Total energy = 954.4041 kcal/mol (946.8823 without restraints) Performing minimization step: 1397. Total energy = 954.2795 kcal/mol (946.7667 without restraints) Performing minimization step: 1398. Total energy = 954.1545 kcal/mol (946.6507 without restraints) Performing minimization step: 1399. Total energy = 954.0300 kcal/mol (946.5352 without restraints) Performing minimization step: 1400. Total energy = 953.9057 kcal/mol (946.4201 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 953.7826 kcal/mol (946.3058 without restraints) Performing minimization step: 1402. Total energy = 953.6595 kcal/mol (946.1919 without restraints) Performing minimization step: 1403. Total energy = 953.5370 kcal/mol (946.0781 without restraints) Performing minimization step: 1404. Total energy = 953.4145 kcal/mol (945.9646 without restraints) Performing minimization step: 1405. Total energy = 953.2919 kcal/mol (945.8510 without restraints) Performing minimization step: 1406. Total energy = 953.1702 kcal/mol (945.7382 without restraints) Performing minimization step: 1407. Total energy = 953.0488 kcal/mol (945.6258 without restraints) Performing minimization step: 1408. Total energy = 952.9278 kcal/mol (945.5137 without restraints) Performing minimization step: 1409. Total energy = 952.8074 kcal/mol (945.4022 without restraints) Performing minimization step: 1410. Total energy = 952.6871 kcal/mol (945.2909 without restraints) Performing minimization step: 1411. Total energy = 952.5670 kcal/mol (945.1796 without restraints) Performing minimization step: 1412. Total energy = 952.4474 kcal/mol (945.0690 without restraints) Performing minimization step: 1413. Total energy = 952.3283 kcal/mol (944.9588 without restraints) Performing minimization step: 1414. Total energy = 952.2096 kcal/mol (944.8489 without restraints) Performing minimization step: 1415. Total energy = 952.0911 kcal/mol (944.7392 without restraints) Performing minimization step: 1416. Total energy = 951.9732 kcal/mol (944.6305 without restraints) Performing minimization step: 1417. Total energy = 951.8558 kcal/mol (944.5217 without restraints) Performing minimization step: 1418. Total energy = 951.7386 kcal/mol (944.4135 without restraints) Performing minimization step: 1419. Total energy = 951.6216 kcal/mol (944.3052 without restraints) Performing minimization step: 1420. Total energy = 951.5052 kcal/mol (944.1976 without restraints) Performing minimization step: 1421. Total energy = 951.3890 kcal/mol (944.0903 without restraints) Performing minimization step: 1422. Total energy = 951.2732 kcal/mol (943.9832 without restraints) Performing minimization step: 1423. Total energy = 951.1578 kcal/mol (943.8768 without restraints) Performing minimization step: 1424. Total energy = 951.0428 kcal/mol (943.7704 without restraints) Performing minimization step: 1425. Total energy = 950.9282 kcal/mol (943.6646 without restraints) Performing minimization step: 1426. Total energy = 950.8137 kcal/mol (943.5589 without restraints) Performing minimization step: 1427. Total energy = 950.6996 kcal/mol (943.4535 without restraints) Performing minimization step: 1428. Total energy = 950.5859 kcal/mol (943.3486 without restraints) Performing minimization step: 1429. Total energy = 950.4727 kcal/mol (943.2441 without restraints) Performing minimization step: 1430. Total energy = 950.3594 kcal/mol (943.1393 without restraints) Performing minimization step: 1431. Total energy = 950.2467 kcal/mol (943.0357 without restraints) Performing minimization step: 1432. Total energy = 950.1346 kcal/mol (942.9321 without restraints) Performing minimization step: 1433. Total energy = 950.0224 kcal/mol (942.8287 without restraints) Performing minimization step: 1434. Total energy = 949.9107 kcal/mol (942.7257 without restraints) Performing minimization step: 1435. Total energy = 949.7992 kcal/mol (942.6229 without restraints) Performing minimization step: 1436. Total energy = 949.6880 kcal/mol (942.5203 without restraints) Performing minimization step: 1437. Total energy = 949.5769 kcal/mol (942.4180 without restraints) Performing minimization step: 1438. Total energy = 949.4664 kcal/mol (942.3161 without restraints) Performing minimization step: 1439. Total energy = 949.3561 kcal/mol (942.2144 without restraints) Performing minimization step: 1440. Total energy = 949.2462 kcal/mol (942.1130 without restraints) Performing minimization step: 1441. Total energy = 949.1365 kcal/mol (942.0120 without restraints) Performing minimization step: 1442. Total energy = 949.0268 kcal/mol (941.9110 without restraints) Performing minimization step: 1443. Total energy = 948.9181 kcal/mol (941.8108 without restraints) Performing minimization step: 1444. Total energy = 948.8092 kcal/mol (941.7104 without restraints) Performing minimization step: 1445. Total energy = 948.7007 kcal/mol (941.6106 without restraints) Performing minimization step: 1446. Total energy = 948.5925 kcal/mol (941.5109 without restraints) Performing minimization step: 1447. Total energy = 948.4853 kcal/mol (941.4123 without restraints) Performing minimization step: 1448. Total energy = 948.3776 kcal/mol (941.3131 without restraints) Performing minimization step: 1449. Total energy = 948.2703 kcal/mol (941.2144 without restraints) Performing minimization step: 1450. Total energy = 948.1634 kcal/mol (941.1161 without restraints) Performing minimization step: 1451. Total energy = 948.0568 kcal/mol (941.0179 without restraints) Performing minimization step: 1452. Total energy = 947.9504 kcal/mol (940.9200 without restraints) Performing minimization step: 1453. Total energy = 947.8443 kcal/mol (940.8224 without restraints) Performing minimization step: 1454. Total energy = 947.7385 kcal/mol (940.7251 without restraints) Performing minimization step: 1455. Total energy = 947.6332 kcal/mol (940.6283 without restraints) Performing minimization step: 1456. Total energy = 947.5280 kcal/mol (940.5315 without restraints) Performing minimization step: 1457. Total energy = 947.4234 kcal/mol (940.4353 without restraints) Performing minimization step: 1458. Total energy = 947.3187 kcal/mol (940.3390 without restraints) Performing minimization step: 1459. Total energy = 947.2142 kcal/mol (940.2430 without restraints) Performing minimization step: 1460. Total energy = 947.1101 kcal/mol (940.1473 without restraints) Performing minimization step: 1461. Total energy = 947.0061 kcal/mol (940.0517 without restraints) Performing minimization step: 1462. Total energy = 946.9027 kcal/mol (939.9567 without restraints) Performing minimization step: 1463. Total energy = 946.7993 kcal/mol (939.8617 without restraints) Performing minimization step: 1464. Total energy = 946.6960 kcal/mol (939.7667 without restraints) Performing minimization step: 1465. Total energy = 946.5934 kcal/mol (939.6725 without restraints) Performing minimization step: 1466. Total energy = 946.4910 kcal/mol (939.5785 without restraints) Performing minimization step: 1467. Total energy = 946.3889 kcal/mol (939.4847 without restraints) Performing minimization step: 1468. Total energy = 946.2868 kcal/mol (939.3909 without restraints) Performing minimization step: 1469. Total energy = 946.1851 kcal/mol (939.2976 without restraints) Performing minimization step: 1470. Total energy = 946.0836 kcal/mol (939.2043 without restraints) Performing minimization step: 1471. Total energy = 945.9823 kcal/mol (939.1113 without restraints) Performing minimization step: 1472. Total energy = 945.8813 kcal/mol (939.0185 without restraints) Performing minimization step: 1473. Total energy = 945.7806 kcal/mol (938.9262 without restraints) Performing minimization step: 1474. Total energy = 945.6801 kcal/mol (938.8339 without restraints) Performing minimization step: 1475. Total energy = 945.5799 kcal/mol (938.7420 without restraints) Performing minimization step: 1476. Total energy = 945.4799 kcal/mol (938.6502 without restraints) Performing minimization step: 1477. Total energy = 945.3798 kcal/mol (938.5583 without restraints) Performing minimization step: 1478. Total energy = 945.2803 kcal/mol (938.4669 without restraints) Performing minimization step: 1479. Total energy = 945.1811 kcal/mol (938.3760 without restraints) Performing minimization step: 1480. Total energy = 945.0820 kcal/mol (938.2852 without restraints) Performing minimization step: 1481. Total energy = 944.9834 kcal/mol (938.1947 without restraints) Performing minimization step: 1482. Total energy = 944.8850 kcal/mol (938.1044 without restraints) Performing minimization step: 1483. Total energy = 944.7866 kcal/mol (938.0142 without restraints) Performing minimization step: 1484. Total energy = 944.6885 kcal/mol (937.9242 without restraints) Performing minimization step: 1485. Total energy = 944.5906 kcal/mol (937.8344 without restraints) Performing minimization step: 1486. Total energy = 944.4929 kcal/mol (937.7448 without restraints) Performing minimization step: 1487. Total energy = 944.3954 kcal/mol (937.6554 without restraints) Performing minimization step: 1488. Total energy = 944.2983 kcal/mol (937.5664 without restraints) Performing minimization step: 1489. Total energy = 944.2013 kcal/mol (937.4776 without restraints) Performing minimization step: 1490. Total energy = 944.1045 kcal/mol (937.3886 without restraints) Performing minimization step: 1491. Total energy = 944.0077 kcal/mol (937.3002 without restraints) Performing minimization step: 1492. Total energy = 943.9115 kcal/mol (937.2119 without restraints) Performing minimization step: 1493. Total energy = 943.8152 kcal/mol (937.1236 without restraints) Performing minimization step: 1494. Total energy = 943.7195 kcal/mol (937.0359 without restraints) Performing minimization step: 1495. Total energy = 943.6239 kcal/mol (936.9484 without restraints) Performing minimization step: 1496. Total energy = 943.5286 kcal/mol (936.8610 without restraints) Performing minimization step: 1497. Total energy = 943.4333 kcal/mol (936.7737 without restraints) Performing minimization step: 1498. Total energy = 943.3383 kcal/mol (936.6867 without restraints) Performing minimization step: 1499. Total energy = 943.2438 kcal/mol (936.6002 without restraints) Performing minimization step: 1500. Total energy = 943.1492 kcal/mol (936.5135 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 943.0549 kcal/mol (936.4272 without restraints) Performing minimization step: 1502. Total energy = 942.9610 kcal/mol (936.3413 without restraints) Performing minimization step: 1503. Total energy = 942.8672 kcal/mol (936.2552 without restraints) Performing minimization step: 1504. Total energy = 942.7738 kcal/mol (936.1698 without restraints) Performing minimization step: 1505. Total energy = 942.6803 kcal/mol (936.0841 without restraints) Performing minimization step: 1506. Total energy = 942.5869 kcal/mol (935.9986 without restraints) Performing minimization step: 1507. Total energy = 942.4937 kcal/mol (935.9134 without restraints) Performing minimization step: 1508. Total energy = 942.4008 kcal/mol (935.8282 without restraints) Performing minimization step: 1509. Total energy = 942.3080 kcal/mol (935.7433 without restraints) Performing minimization step: 1510. Total energy = 942.2154 kcal/mol (935.6586 without restraints) Performing minimization step: 1511. Total energy = 942.1233 kcal/mol (935.5743 without restraints) Performing minimization step: 1512. Total energy = 942.0312 kcal/mol (935.4899 without restraints) Performing minimization step: 1513. Total energy = 941.9392 kcal/mol (935.4057 without restraints) Performing minimization step: 1514. Total energy = 941.8474 kcal/mol (935.3218 without restraints) Performing minimization step: 1515. Total energy = 941.7557 kcal/mol (935.2378 without restraints) Performing minimization step: 1516. Total energy = 941.6643 kcal/mol (935.1542 without restraints) Performing minimization step: 1517. Total energy = 941.5733 kcal/mol (935.0709 without restraints) Performing minimization step: 1518. Total energy = 941.4825 kcal/mol (934.9879 without restraints) Performing minimization step: 1519. Total energy = 941.3917 kcal/mol (934.9048 without restraints) Performing minimization step: 1520. Total energy = 941.3011 kcal/mol (934.8219 without restraints) Performing minimization step: 1521. Total energy = 941.2108 kcal/mol (934.7394 without restraints) Performing minimization step: 1522. Total energy = 941.1208 kcal/mol (934.6570 without restraints) Performing minimization step: 1523. Total energy = 941.0308 kcal/mol (934.5747 without restraints) Performing minimization step: 1524. Total energy = 940.9410 kcal/mol (934.4925 without restraints) Performing minimization step: 1525. Total energy = 940.8519 kcal/mol (934.4112 without restraints) Performing minimization step: 1526. Total energy = 940.7629 kcal/mol (934.3297 without restraints) Performing minimization step: 1527. Total energy = 940.6737 kcal/mol (934.2481 without restraints) Performing minimization step: 1528. Total energy = 940.5845 kcal/mol (934.1666 without restraints) Performing minimization step: 1529. Total energy = 940.4956 kcal/mol (934.0853 without restraints) Performing minimization step: 1530. Total energy = 940.4072 kcal/mol (934.0046 without restraints) Performing minimization step: 1531. Total energy = 940.3187 kcal/mol (933.9236 without restraints) Performing minimization step: 1532. Total energy = 940.2304 kcal/mol (933.8428 without restraints) Performing minimization step: 1533. Total energy = 940.1421 kcal/mol (933.7621 without restraints) Performing minimization step: 1534. Total energy = 940.0536 kcal/mol (933.6812 without restraints) Performing minimization step: 1535. Total energy = 939.9662 kcal/mol (933.6013 without restraints) Performing minimization step: 1536. Total energy = 939.8786 kcal/mol (933.5214 without restraints) Performing minimization step: 1537. Total energy = 939.7910 kcal/mol (933.4411 without restraints) Performing minimization step: 1538. Total energy = 939.7036 kcal/mol (933.3613 without restraints) Performing minimization step: 1539. Total energy = 939.6165 kcal/mol (933.2816 without restraints) Performing minimization step: 1540. Total energy = 939.5295 kcal/mol (933.2021 without restraints) Performing minimization step: 1541. Total energy = 939.4427 kcal/mol (933.1227 without restraints) Performing minimization step: 1542. Total energy = 939.3563 kcal/mol (933.0438 without restraints) Performing minimization step: 1543. Total energy = 939.2699 kcal/mol (932.9649 without restraints) Performing minimization step: 1544. Total energy = 939.1838 kcal/mol (932.8863 without restraints) Performing minimization step: 1545. Total energy = 939.0980 kcal/mol (932.8078 without restraints) Performing minimization step: 1546. Total energy = 939.0120 kcal/mol (932.7292 without restraints) Performing minimization step: 1547. Total energy = 938.9262 kcal/mol (932.6508 without restraints) Performing minimization step: 1548. Total energy = 938.8408 kcal/mol (932.5728 without restraints) Performing minimization step: 1549. Total energy = 938.7556 kcal/mol (932.4949 without restraints) Performing minimization step: 1550. Total energy = 938.6699 kcal/mol (932.4166 without restraints) Performing minimization step: 1551. Total energy = 938.5850 kcal/mol (932.3391 without restraints) Performing minimization step: 1552. Total energy = 938.5002 kcal/mol (932.2616 without restraints) Performing minimization step: 1553. Total energy = 938.4158 kcal/mol (932.1846 without restraints) Performing minimization step: 1554. Total energy = 938.3312 kcal/mol (932.1073 without restraints) Performing minimization step: 1555. Total energy = 938.2469 kcal/mol (932.0303 without restraints) Performing minimization step: 1556. Total energy = 938.1630 kcal/mol (931.9537 without restraints) Performing minimization step: 1557. Total energy = 938.0788 kcal/mol (931.8768 without restraints) Performing minimization step: 1558. Total energy = 937.9948 kcal/mol (931.8001 without restraints) Performing minimization step: 1559. Total energy = 937.9109 kcal/mol (931.7234 without restraints) Performing minimization step: 1560. Total energy = 937.8275 kcal/mol (931.6472 without restraints) Performing minimization step: 1561. Total energy = 937.7440 kcal/mol (931.5710 without restraints) Performing minimization step: 1562. Total energy = 937.6609 kcal/mol (931.4952 without restraints) Performing minimization step: 1563. Total energy = 937.5774 kcal/mol (931.4188 without restraints) Performing minimization step: 1564. Total energy = 937.4943 kcal/mol (931.3431 without restraints) Performing minimization step: 1565. Total energy = 937.4115 kcal/mol (931.2675 without restraints) Performing minimization step: 1566. Total energy = 937.3288 kcal/mol (931.1919 without restraints) Performing minimization step: 1567. Total energy = 937.2462 kcal/mol (931.1164 without restraints) Performing minimization step: 1568. Total energy = 937.1640 kcal/mol (931.0414 without restraints) Performing minimization step: 1569. Total energy = 937.0818 kcal/mol (930.9663 without restraints) Performing minimization step: 1570. Total energy = 936.9998 kcal/mol (930.8914 without restraints) Performing minimization step: 1571. Total energy = 936.9177 kcal/mol (930.8163 without restraints) Performing minimization step: 1572. Total energy = 936.8356 kcal/mol (930.7416 without restraints) Performing minimization step: 1573. Total energy = 936.7544 kcal/mol (930.6674 without restraints) Performing minimization step: 1574. Total energy = 936.6727 kcal/mol (930.5927 without restraints) Performing minimization step: 1575. Total energy = 936.5911 kcal/mol (930.5183 without restraints) Performing minimization step: 1576. Total energy = 936.5099 kcal/mol (930.4440 without restraints) Performing minimization step: 1577. Total energy = 936.4289 kcal/mol (930.3702 without restraints) Performing minimization step: 1578. Total energy = 936.3479 kcal/mol (930.2963 without restraints) Performing minimization step: 1579. Total energy = 936.2675 kcal/mol (930.2232 without restraints) Performing minimization step: 1580. Total energy = 936.1870 kcal/mol (930.1495 without restraints) Performing minimization step: 1581. Total energy = 936.1064 kcal/mol (930.0759 without restraints) Performing minimization step: 1582. Total energy = 936.0262 kcal/mol (930.0026 without restraints) Performing minimization step: 1583. Total energy = 935.9460 kcal/mol (929.9295 without restraints) Performing minimization step: 1584. Total energy = 935.8658 kcal/mol (929.8563 without restraints) Performing minimization step: 1585. Total energy = 935.7858 kcal/mol (929.7832 without restraints) Performing minimization step: 1586. Total energy = 935.7067 kcal/mol (929.7112 without restraints) Performing minimization step: 1587. Total energy = 935.6272 kcal/mol (929.6386 without restraints) Performing minimization step: 1588. Total energy = 935.5476 kcal/mol (929.5659 without restraints) Performing minimization step: 1589. Total energy = 935.4686 kcal/mol (929.4939 without restraints) Performing minimization step: 1590. Total energy = 935.3893 kcal/mol (929.4215 without restraints) Performing minimization step: 1591. Total energy = 935.3106 kcal/mol (929.3497 without restraints) Performing minimization step: 1592. Total energy = 935.2316 kcal/mol (929.2776 without restraints) Performing minimization step: 1593. Total energy = 935.1527 kcal/mol (929.2055 without restraints) Performing minimization step: 1594. Total energy = 935.0741 kcal/mol (929.1338 without restraints) Performing minimization step: 1595. Total energy = 934.9954 kcal/mol (929.0621 without restraints) Performing minimization step: 1596. Total energy = 934.9169 kcal/mol (928.9904 without restraints) Performing minimization step: 1597. Total energy = 934.8383 kcal/mol (928.9186 without restraints) Performing minimization step: 1598. Total energy = 934.7600 kcal/mol (928.8472 without restraints) Performing minimization step: 1599. Total energy = 934.6819 kcal/mol (928.7759 without restraints) Performing minimization step: 1600. Total energy = 934.6042 kcal/mol (928.7050 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 934.5263 kcal/mol (928.6339 without restraints) Performing minimization step: 1602. Total energy = 934.4484 kcal/mol (928.5628 without restraints) Performing minimization step: 1603. Total energy = 934.3708 kcal/mol (928.4920 without restraints) Performing minimization step: 1604. Total energy = 934.2934 kcal/mol (928.4214 without restraints) Performing minimization step: 1605. Total energy = 934.2163 kcal/mol (928.3512 without restraints) Performing minimization step: 1606. Total energy = 934.1394 kcal/mol (928.2809 without restraints) Performing minimization step: 1607. Total energy = 934.0622 kcal/mol (928.2104 without restraints) Performing minimization step: 1608. Total energy = 933.9852 kcal/mol (928.1402 without restraints) Performing minimization step: 1609. Total energy = 933.9084 kcal/mol (928.0701 without restraints) Performing minimization step: 1610. Total energy = 933.8315 kcal/mol (928.0000 without restraints) Performing minimization step: 1611. Total energy = 933.7554 kcal/mol (927.9306 without restraints) Performing minimization step: 1612. Total energy = 933.6790 kcal/mol (927.8608 without restraints) Performing minimization step: 1613. Total energy = 933.6030 kcal/mol (927.7915 without restraints) Performing minimization step: 1614. Total energy = 933.5269 kcal/mol (927.7222 without restraints) Performing minimization step: 1615. Total energy = 933.4513 kcal/mol (927.6531 without restraints) Performing minimization step: 1616. Total energy = 933.3753 kcal/mol (927.5839 without restraints) Performing minimization step: 1617. Total energy = 933.2995 kcal/mol (927.5146 without restraints) Performing minimization step: 1618. Total energy = 933.2240 kcal/mol (927.4457 without restraints) Performing minimization step: 1619. Total energy = 933.1482 kcal/mol (927.3765 without restraints) Performing minimization step: 1620. Total energy = 933.0726 kcal/mol (927.3076 without restraints) Performing minimization step: 1621. Total energy = 932.9972 kcal/mol (927.2388 without restraints) Performing minimization step: 1622. Total energy = 932.9221 kcal/mol (927.1704 without restraints) Performing minimization step: 1623. Total energy = 932.8474 kcal/mol (927.1021 without restraints) Performing minimization step: 1624. Total energy = 932.7719 kcal/mol (927.0333 without restraints) Performing minimization step: 1625. Total energy = 932.6972 kcal/mol (926.9652 without restraints) Performing minimization step: 1626. Total energy = 932.6226 kcal/mol (926.8971 without restraints) Performing minimization step: 1627. Total energy = 932.5480 kcal/mol (926.8290 without restraints) Performing minimization step: 1628. Total energy = 932.4735 kcal/mol (926.7611 without restraints) Performing minimization step: 1629. Total energy = 932.3993 kcal/mol (926.6934 without restraints) Performing minimization step: 1630. Total energy = 932.3251 kcal/mol (926.6256 without restraints) Performing minimization step: 1631. Total energy = 932.2509 kcal/mol (926.5580 without restraints) Performing minimization step: 1632. Total energy = 932.1771 kcal/mol (926.4907 without restraints) Performing minimization step: 1633. Total energy = 932.1034 kcal/mol (926.4235 without restraints) Performing minimization step: 1634. Total energy = 932.0296 kcal/mol (926.3561 without restraints) Performing minimization step: 1635. Total energy = 931.9558 kcal/mol (926.2889 without restraints) Performing minimization step: 1636. Total energy = 931.8822 kcal/mol (926.2217 without restraints) Performing minimization step: 1637. Total energy = 931.8090 kcal/mol (926.1550 without restraints) Performing minimization step: 1638. Total energy = 931.7356 kcal/mol (926.0880 without restraints) Performing minimization step: 1639. Total energy = 931.6622 kcal/mol (926.0211 without restraints) Performing minimization step: 1640. Total energy = 931.5895 kcal/mol (925.9548 without restraints) Performing minimization step: 1641. Total energy = 931.5165 kcal/mol (925.8881 without restraints) Performing minimization step: 1642. Total energy = 931.4438 kcal/mol (925.8220 without restraints) Performing minimization step: 1643. Total energy = 931.3713 kcal/mol (925.7557 without restraints) Performing minimization step: 1644. Total energy = 931.2990 kcal/mol (925.6899 without restraints) Performing minimization step: 1645. Total energy = 931.2265 kcal/mol (925.6237 without restraints) Performing minimization step: 1646. Total energy = 931.1541 kcal/mol (925.5576 without restraints) Performing minimization step: 1647. Total energy = 931.0815 kcal/mol (925.4913 without restraints) Performing minimization step: 1648. Total energy = 931.0096 kcal/mol (925.4259 without restraints) Performing minimization step: 1649. Total energy = 930.9375 kcal/mol (925.3601 without restraints) Performing minimization step: 1650. Total energy = 930.8657 kcal/mol (925.2946 without restraints) Performing minimization step: 1651. Total energy = 930.7938 kcal/mol (925.2290 without restraints) Performing minimization step: 1652. Total energy = 930.7222 kcal/mol (925.1637 without restraints) Performing minimization step: 1653. Total energy = 930.6506 kcal/mol (925.0984 without restraints) Performing minimization step: 1654. Total energy = 930.5790 kcal/mol (925.0331 without restraints) Performing minimization step: 1655. Total energy = 930.5077 kcal/mol (924.9680 without restraints) Performing minimization step: 1656. Total energy = 930.4362 kcal/mol (924.9027 without restraints) Performing minimization step: 1657. Total energy = 930.3648 kcal/mol (924.8377 without restraints) Performing minimization step: 1658. Total energy = 930.2936 kcal/mol (924.7728 without restraints) Performing minimization step: 1659. Total energy = 930.2229 kcal/mol (924.7084 without restraints) Performing minimization step: 1660. Total energy = 930.1523 kcal/mol (924.6439 without restraints) Performing minimization step: 1661. Total energy = 930.0814 kcal/mol (924.5792 without restraints) Performing minimization step: 1662. Total energy = 930.0107 kcal/mol (924.5148 without restraints) Performing minimization step: 1663. Total energy = 929.9401 kcal/mol (924.4504 without restraints) Performing minimization step: 1664. Total energy = 929.8696 kcal/mol (924.3860 without restraints) Performing minimization step: 1665. Total energy = 929.7992 kcal/mol (924.3218 without restraints) Performing minimization step: 1666. Total energy = 929.7290 kcal/mol (924.2579 without restraints) Performing minimization step: 1667. Total energy = 929.6592 kcal/mol (924.1943 without restraints) Performing minimization step: 1668. Total energy = 929.5892 kcal/mol (924.1303 without restraints) Performing minimization step: 1669. Total energy = 929.5193 kcal/mol (924.0667 without restraints) Performing minimization step: 1670. Total energy = 929.4499 kcal/mol (924.0033 without restraints) Performing minimization step: 1671. Total energy = 929.3803 kcal/mol (923.9399 without restraints) Performing minimization step: 1672. Total energy = 929.3107 kcal/mol (923.8765 without restraints) Performing minimization step: 1673. Total energy = 929.2413 kcal/mol (923.8131 without restraints) Performing minimization step: 1674. Total energy = 929.1718 kcal/mol (923.7497 without restraints) Performing minimization step: 1675. Total energy = 929.1022 kcal/mol (923.6862 without restraints) Performing minimization step: 1676. Total energy = 929.0332 kcal/mol (923.6232 without restraints) Performing minimization step: 1677. Total energy = 928.9640 kcal/mol (923.5601 without restraints) Performing minimization step: 1678. Total energy = 928.8948 kcal/mol (923.4970 without restraints) Performing minimization step: 1679. Total energy = 928.8260 kcal/mol (923.4344 without restraints) Performing minimization step: 1680. Total energy = 928.7577 kcal/mol (923.3720 without restraints) Performing minimization step: 1681. Total energy = 928.6891 kcal/mol (923.3095 without restraints) Performing minimization step: 1682. Total energy = 928.6204 kcal/mol (923.2468 without restraints) Performing minimization step: 1683. Total energy = 928.5518 kcal/mol (923.1842 without restraints) Performing minimization step: 1684. Total energy = 928.4833 kcal/mol (923.1217 without restraints) Performing minimization step: 1685. Total energy = 928.4153 kcal/mol (923.0598 without restraints) Performing minimization step: 1686. Total energy = 928.3472 kcal/mol (922.9976 without restraints) Performing minimization step: 1687. Total energy = 928.2794 kcal/mol (922.9358 without restraints) Performing minimization step: 1688. Total energy = 928.2113 kcal/mol (922.8736 without restraints) Performing minimization step: 1689. Total energy = 928.1432 kcal/mol (922.8116 without restraints) Performing minimization step: 1690. Total energy = 928.0756 kcal/mol (922.7500 without restraints) Performing minimization step: 1691. Total energy = 928.0078 kcal/mol (922.6881 without restraints) Performing minimization step: 1692. Total energy = 927.9401 kcal/mol (922.6264 without restraints) Performing minimization step: 1693. Total energy = 927.8725 kcal/mol (922.5647 without restraints) Performing minimization step: 1694. Total energy = 927.8051 kcal/mol (922.5032 without restraints) Performing minimization step: 1695. Total energy = 927.7373 kcal/mol (922.4413 without restraints) Performing minimization step: 1696. Total energy = 927.6699 kcal/mol (922.3799 without restraints) Performing minimization step: 1697. Total energy = 927.6027 kcal/mol (922.3185 without restraints) Performing minimization step: 1698. Total energy = 927.5357 kcal/mol (922.2575 without restraints) Performing minimization step: 1699. Total energy = 927.4687 kcal/mol (922.1963 without restraints) Performing minimization step: 1700. Total energy = 927.4015 kcal/mol (922.1349 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 927.3344 kcal/mol (922.0739 without restraints) Performing minimization step: 1702. Total energy = 927.2677 kcal/mol (922.0130 without restraints) Performing minimization step: 1703. Total energy = 927.2013 kcal/mol (921.9525 without restraints) Performing minimization step: 1704. Total energy = 927.1350 kcal/mol (921.8919 without restraints) Performing minimization step: 1705. Total energy = 927.0686 kcal/mol (921.8314 without restraints) Performing minimization step: 1706. Total energy = 927.0025 kcal/mol (921.7711 without restraints) Performing minimization step: 1707. Total energy = 926.9363 kcal/mol (921.7108 without restraints) Performing minimization step: 1708. Total energy = 926.8702 kcal/mol (921.6504 without restraints) Performing minimization step: 1709. Total energy = 926.8047 kcal/mol (921.5907 without restraints) Performing minimization step: 1710. Total energy = 926.7389 kcal/mol (921.5307 without restraints) Performing minimization step: 1711. Total energy = 926.6730 kcal/mol (921.4705 without restraints) Performing minimization step: 1712. Total energy = 926.6071 kcal/mol (921.4103 without restraints) Performing minimization step: 1713. Total energy = 926.5414 kcal/mol (921.3505 without restraints) Performing minimization step: 1714. Total energy = 926.4757 kcal/mol (921.2906 without restraints) Performing minimization step: 1715. Total energy = 926.4101 kcal/mol (921.2307 without restraints) Performing minimization step: 1716. Total energy = 926.3445 kcal/mol (921.1709 without restraints) Performing minimization step: 1717. Total energy = 926.2793 kcal/mol (921.1114 without restraints) Performing minimization step: 1718. Total energy = 926.2143 kcal/mol (921.0523 without restraints) Performing minimization step: 1719. Total energy = 926.1492 kcal/mol (920.9927 without restraints) Performing minimization step: 1720. Total energy = 926.0840 kcal/mol (920.9333 without restraints) Performing minimization step: 1721. Total energy = 926.0192 kcal/mol (920.8742 without restraints) Performing minimization step: 1722. Total energy = 925.9543 kcal/mol (920.8149 without restraints) Performing minimization step: 1723. Total energy = 925.8894 kcal/mol (920.7557 without restraints) Performing minimization step: 1724. Total energy = 925.8247 kcal/mol (920.6967 without restraints) Performing minimization step: 1725. Total energy = 925.7601 kcal/mol (920.6379 without restraints) Performing minimization step: 1726. Total energy = 925.6958 kcal/mol (920.5791 without restraints) Performing minimization step: 1727. Total energy = 925.6316 kcal/mol (920.5206 without restraints) Performing minimization step: 1728. Total energy = 925.5672 kcal/mol (920.4618 without restraints) Performing minimization step: 1729. Total energy = 925.5032 kcal/mol (920.4035 without restraints) Performing minimization step: 1730. Total energy = 925.4393 kcal/mol (920.3453 without restraints) Performing minimization step: 1731. Total energy = 925.3757 kcal/mol (920.2872 without restraints) Performing minimization step: 1732. Total energy = 925.3116 kcal/mol (920.2288 without restraints) Performing minimization step: 1733. Total energy = 925.2481 kcal/mol (920.1708 without restraints) Performing minimization step: 1734. Total energy = 925.1843 kcal/mol (920.1126 without restraints) Performing minimization step: 1735. Total energy = 925.1207 kcal/mol (920.0545 without restraints) Performing minimization step: 1736. Total energy = 925.0569 kcal/mol (919.9963 without restraints) Performing minimization step: 1737. Total energy = 924.9933 kcal/mol (919.9383 without restraints) Performing minimization step: 1738. Total energy = 924.9297 kcal/mol (919.8803 without restraints) Performing minimization step: 1739. Total energy = 924.8662 kcal/mol (919.8223 without restraints) Performing minimization step: 1740. Total energy = 924.8027 kcal/mol (919.7644 without restraints) Performing minimization step: 1741. Total energy = 924.7393 kcal/mol (919.7065 without restraints) Performing minimization step: 1742. Total energy = 924.6760 kcal/mol (919.6488 without restraints) Performing minimization step: 1743. Total energy = 924.6128 kcal/mol (919.5911 without restraints) Performing minimization step: 1744. Total energy = 924.5497 kcal/mol (919.5334 without restraints) Performing minimization step: 1745. Total energy = 924.4866 kcal/mol (919.4759 without restraints) Performing minimization step: 1746. Total energy = 924.4236 kcal/mol (919.4184 without restraints) Performing minimization step: 1747. Total energy = 924.3609 kcal/mol (919.3612 without restraints) Performing minimization step: 1748. Total energy = 924.2984 kcal/mol (919.3042 without restraints) Performing minimization step: 1749. Total energy = 924.2359 kcal/mol (919.2471 without restraints) Performing minimization step: 1750. Total energy = 924.1732 kcal/mol (919.1899 without restraints) Performing minimization step: 1751. Total energy = 924.1106 kcal/mol (919.1328 without restraints) Performing minimization step: 1752. Total energy = 924.0482 kcal/mol (919.0758 without restraints) Performing minimization step: 1753. Total energy = 923.9860 kcal/mol (919.0190 without restraints) Performing minimization step: 1754. Total energy = 923.9237 kcal/mol (918.9621 without restraints) Performing minimization step: 1755. Total energy = 923.8614 kcal/mol (918.9053 without restraints) Performing minimization step: 1756. Total energy = 923.7997 kcal/mol (918.8490 without restraints) Performing minimization step: 1757. Total energy = 923.7376 kcal/mol (918.7923 without restraints) Performing minimization step: 1758. Total energy = 923.6756 kcal/mol (918.7357 without restraints) Performing minimization step: 1759. Total energy = 923.6140 kcal/mol (918.6796 without restraints) Performing minimization step: 1760. Total energy = 923.5524 kcal/mol (918.6233 without restraints) Performing minimization step: 1761. Total energy = 923.4909 kcal/mol (918.5671 without restraints) Performing minimization step: 1762. Total energy = 923.4294 kcal/mol (918.5110 without restraints) Performing minimization step: 1763. Total energy = 923.3679 kcal/mol (918.4549 without restraints) Performing minimization step: 1764. Total energy = 923.3063 kcal/mol (918.3986 without restraints) Performing minimization step: 1765. Total energy = 923.2449 kcal/mol (918.3427 without restraints) Performing minimization step: 1766. Total energy = 923.1836 kcal/mol (918.2866 without restraints) Performing minimization step: 1767. Total energy = 923.1223 kcal/mol (918.2307 without restraints) Performing minimization step: 1768. Total energy = 923.0609 kcal/mol (918.1746 without restraints) Performing minimization step: 1769. Total energy = 922.9997 kcal/mol (918.1187 without restraints) Performing minimization step: 1770. Total energy = 922.9388 kcal/mol (918.0633 without restraints) Performing minimization step: 1771. Total energy = 922.8785 kcal/mol (918.0081 without restraints) Performing minimization step: 1772. Total energy = 922.8180 kcal/mol (917.9529 without restraints) Performing minimization step: 1773. Total energy = 922.7571 kcal/mol (917.8973 without restraints) Performing minimization step: 1774. Total energy = 922.6963 kcal/mol (917.8417 without restraints) Performing minimization step: 1775. Total energy = 922.6358 kcal/mol (917.7865 without restraints) Performing minimization step: 1776. Total energy = 922.5754 kcal/mol (917.7313 without restraints) Performing minimization step: 1777. Total energy = 922.5152 kcal/mol (917.6764 without restraints) Performing minimization step: 1778. Total energy = 922.4548 kcal/mol (917.6214 without restraints) Performing minimization step: 1779. Total energy = 922.3949 kcal/mol (917.5667 without restraints) Performing minimization step: 1780. Total energy = 922.3348 kcal/mol (917.5117 without restraints) Performing minimization step: 1781. Total energy = 922.2745 kcal/mol (917.4567 without restraints) Performing minimization step: 1782. Total energy = 922.2144 kcal/mol (917.4017 without restraints) Performing minimization step: 1783. Total energy = 922.1547 kcal/mol (917.3473 without restraints) Performing minimization step: 1784. Total energy = 922.0947 kcal/mol (917.2925 without restraints) Performing minimization step: 1785. Total energy = 922.0351 kcal/mol (917.2381 without restraints) Performing minimization step: 1786. Total energy = 921.9756 kcal/mol (917.1838 without restraints) Performing minimization step: 1787. Total energy = 921.9161 kcal/mol (917.1294 without restraints) Performing minimization step: 1788. Total energy = 921.8564 kcal/mol (917.0748 without restraints) Performing minimization step: 1789. Total energy = 921.7967 kcal/mol (917.0203 without restraints) Performing minimization step: 1790. Total energy = 921.7368 kcal/mol (916.9656 without restraints) Performing minimization step: 1791. Total energy = 921.6772 kcal/mol (916.9111 without restraints) Performing minimization step: 1792. Total energy = 921.6181 kcal/mol (916.8572 without restraints) Performing minimization step: 1793. Total energy = 921.5589 kcal/mol (916.8031 without restraints) Performing minimization step: 1794. Total energy = 921.4996 kcal/mol (916.7489 without restraints) Performing minimization step: 1795. Total energy = 921.4403 kcal/mol (916.6947 without restraints) Performing minimization step: 1796. Total energy = 921.3811 kcal/mol (916.6406 without restraints) Performing minimization step: 1797. Total energy = 921.3219 kcal/mol (916.5866 without restraints) Performing minimization step: 1798. Total energy = 921.2630 kcal/mol (916.5327 without restraints) Performing minimization step: 1799. Total energy = 921.2040 kcal/mol (916.4788 without restraints) Performing minimization step: 1800. Total energy = 921.1451 kcal/mol (916.4250 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 921.0863 kcal/mol (916.3712 without restraints) Performing minimization step: 1802. Total energy = 921.0275 kcal/mol (916.3176 without restraints) Performing minimization step: 1803. Total energy = 920.9692 kcal/mol (916.2644 without restraints) Performing minimization step: 1804. Total energy = 920.9106 kcal/mol (916.2107 without restraints) Performing minimization step: 1805. Total energy = 920.8523 kcal/mol (916.1576 without restraints) Performing minimization step: 1806. Total energy = 920.7940 kcal/mol (916.1043 without restraints) Performing minimization step: 1807. Total energy = 920.7356 kcal/mol (916.0508 without restraints) Performing minimization step: 1808. Total energy = 920.6772 kcal/mol (915.9975 without restraints) Performing minimization step: 1809. Total energy = 920.6189 kcal/mol (915.9442 without restraints) Performing minimization step: 1810. Total energy = 920.5609 kcal/mol (915.8912 without restraints) Performing minimization step: 1811. Total energy = 920.5027 kcal/mol (915.8380 without restraints) Performing minimization step: 1812. Total energy = 920.4446 kcal/mol (915.7849 without restraints) Performing minimization step: 1813. Total energy = 920.3870 kcal/mol (915.7322 without restraints) Performing minimization step: 1814. Total energy = 920.3290 kcal/mol (915.6792 without restraints) Performing minimization step: 1815. Total energy = 920.2711 kcal/mol (915.6262 without restraints) Performing minimization step: 1816. Total energy = 920.2137 kcal/mol (915.5739 without restraints) Performing minimization step: 1817. Total energy = 920.1562 kcal/mol (915.5212 without restraints) Performing minimization step: 1818. Total energy = 920.0984 kcal/mol (915.4684 without restraints) Performing minimization step: 1819. Total energy = 920.0408 kcal/mol (915.4158 without restraints) Performing minimization step: 1820. Total energy = 919.9827 kcal/mol (915.3625 without restraints) Performing minimization step: 1821. Total energy = 919.9252 kcal/mol (915.3100 without restraints) Performing minimization step: 1822. Total energy = 919.8681 kcal/mol (915.2577 without restraints) Performing minimization step: 1823. Total energy = 919.8108 kcal/mol (915.2056 without restraints) Performing minimization step: 1824. Total energy = 919.7536 kcal/mol (915.1532 without restraints) Performing minimization step: 1825. Total energy = 919.6967 kcal/mol (915.1011 without restraints) Performing minimization step: 1826. Total energy = 919.6399 kcal/mol (915.0492 without restraints) Performing minimization step: 1827. Total energy = 919.5828 kcal/mol (914.9970 without restraints) Performing minimization step: 1828. Total energy = 919.5265 kcal/mol (914.9455 without restraints) Performing minimization step: 1829. Total energy = 919.4695 kcal/mol (914.8934 without restraints) Performing minimization step: 1830. Total energy = 919.4124 kcal/mol (914.8411 without restraints) Performing minimization step: 1831. Total energy = 919.3556 kcal/mol (914.7892 without restraints) Performing minimization step: 1832. Total energy = 919.2989 kcal/mol (914.7375 without restraints) Performing minimization step: 1833. Total energy = 919.2426 kcal/mol (914.6858 without restraints) Performing minimization step: 1834. Total energy = 919.1860 kcal/mol (914.6341 without restraints) Performing minimization step: 1835. Total energy = 919.1294 kcal/mol (914.5823 without restraints) Performing minimization step: 1836. Total energy = 919.0729 kcal/mol (914.5306 without restraints) Performing minimization step: 1837. Total energy = 919.0169 kcal/mol (914.4794 without restraints) Performing minimization step: 1838. Total energy = 918.9605 kcal/mol (914.4280 without restraints) Performing minimization step: 1839. Total energy = 918.9043 kcal/mol (914.3764 without restraints) Performing minimization step: 1840. Total energy = 918.8483 kcal/mol (914.3254 without restraints) Performing minimization step: 1841. Total energy = 918.7917 kcal/mol (914.2733 without restraints) Performing minimization step: 1842. Total energy = 918.7361 kcal/mol (914.2226 without restraints) Performing minimization step: 1843. Total energy = 918.6800 kcal/mol (914.1712 without restraints) Performing minimization step: 1844. Total energy = 918.6242 kcal/mol (914.1202 without restraints) Performing minimization step: 1845. Total energy = 918.5683 kcal/mol (914.0690 without restraints) Performing minimization step: 1846. Total energy = 918.5121 kcal/mol (914.0176 without restraints) Performing minimization step: 1847. Total energy = 918.4564 kcal/mol (913.9666 without restraints) Performing minimization step: 1848. Total energy = 918.4009 kcal/mol (913.9159 without restraints) Performing minimization step: 1849. Total energy = 918.3454 kcal/mol (913.8651 without restraints) Performing minimization step: 1850. Total energy = 918.2899 kcal/mol (913.8142 without restraints) Performing minimization step: 1851. Total energy = 918.2346 kcal/mol (913.7636 without restraints) Performing minimization step: 1852. Total energy = 918.1791 kcal/mol (913.7128 without restraints) Performing minimization step: 1853. Total energy = 918.1236 kcal/mol (913.6620 without restraints) Performing minimization step: 1854. Total energy = 918.0683 kcal/mol (913.6115 without restraints) Performing minimization step: 1855. Total energy = 918.0132 kcal/mol (913.5611 without restraints) Performing minimization step: 1856. Total energy = 917.9581 kcal/mol (913.5105 without restraints) Performing minimization step: 1857. Total energy = 917.9033 kcal/mol (913.4604 without restraints) Performing minimization step: 1858. Total energy = 917.8481 kcal/mol (913.4097 without restraints) Performing minimization step: 1859. Total energy = 917.7931 kcal/mol (913.3595 without restraints) Performing minimization step: 1860. Total energy = 917.7381 kcal/mol (913.3091 without restraints) Performing minimization step: 1861. Total energy = 917.6834 kcal/mol (913.2591 without restraints) Performing minimization step: 1862. Total energy = 917.6285 kcal/mol (913.2087 without restraints) Performing minimization step: 1863. Total energy = 917.5741 kcal/mol (913.1590 without restraints) Performing minimization step: 1864. Total energy = 917.5193 kcal/mol (913.1088 without restraints) Performing minimization step: 1865. Total energy = 917.4646 kcal/mol (913.0587 without restraints) Performing minimization step: 1866. Total energy = 917.4102 kcal/mol (913.0089 without restraints) Performing minimization step: 1867. Total energy = 917.3558 kcal/mol (912.9590 without restraints) Performing minimization step: 1868. Total energy = 917.3013 kcal/mol (912.9093 without restraints) Performing minimization step: 1869. Total energy = 917.2472 kcal/mol (912.8597 without restraints) Performing minimization step: 1870. Total energy = 917.1930 kcal/mol (912.8101 without restraints) Performing minimization step: 1871. Total energy = 917.1388 kcal/mol (912.7603 without restraints) Performing minimization step: 1872. Total energy = 917.0846 kcal/mol (912.7107 without restraints) Performing minimization step: 1873. Total energy = 917.0305 kcal/mol (912.6612 without restraints) Performing minimization step: 1874. Total energy = 916.9768 kcal/mol (912.6120 without restraints) Performing minimization step: 1875. Total energy = 916.9236 kcal/mol (912.5634 without restraints) Performing minimization step: 1876. Total energy = 916.8698 kcal/mol (912.5141 without restraints) Performing minimization step: 1877. Total energy = 916.8158 kcal/mol (912.4646 without restraints) Performing minimization step: 1878. Total energy = 916.7620 kcal/mol (912.4153 without restraints) Performing minimization step: 1879. Total energy = 916.7082 kcal/mol (912.3660 without restraints) Performing minimization step: 1880. Total energy = 916.6543 kcal/mol (912.3166 without restraints) Performing minimization step: 1881. Total energy = 916.6006 kcal/mol (912.2673 without restraints) Performing minimization step: 1882. Total energy = 916.5474 kcal/mol (912.2187 without restraints) Performing minimization step: 1883. Total energy = 916.4938 kcal/mol (912.1695 without restraints) Performing minimization step: 1884. Total energy = 916.4404 kcal/mol (912.1206 without restraints) Performing minimization step: 1885. Total energy = 916.3869 kcal/mol (912.0715 without restraints) Performing minimization step: 1886. Total energy = 916.3335 kcal/mol (912.0227 without restraints) Performing minimization step: 1887. Total energy = 916.2803 kcal/mol (911.9738 without restraints) Performing minimization step: 1888. Total energy = 916.2269 kcal/mol (911.9249 without restraints) Performing minimization step: 1889. Total energy = 916.1736 kcal/mol (911.8760 without restraints) Performing minimization step: 1890. Total energy = 916.1204 kcal/mol (911.8272 without restraints) Performing minimization step: 1891. Total energy = 916.0671 kcal/mol (911.7784 without restraints) Performing minimization step: 1892. Total energy = 916.0139 kcal/mol (911.7294 without restraints) Performing minimization step: 1893. Total energy = 915.9606 kcal/mol (911.6807 without restraints) Performing minimization step: 1894. Total energy = 915.9076 kcal/mol (911.6321 without restraints) Performing minimization step: 1895. Total energy = 915.8547 kcal/mol (911.5836 without restraints) Performing minimization step: 1896. Total energy = 915.8019 kcal/mol (911.5351 without restraints) Performing minimization step: 1897. Total energy = 915.7495 kcal/mol (911.4872 without restraints) Performing minimization step: 1898. Total energy = 915.6971 kcal/mol (911.4391 without restraints) Performing minimization step: 1899. Total energy = 915.6445 kcal/mol (911.3908 without restraints) Performing minimization step: 1900. Total energy = 915.5917 kcal/mol (911.3424 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 915.5395 kcal/mol (911.2947 without restraints) Performing minimization step: 1902. Total energy = 915.4870 kcal/mol (911.2464 without restraints) Performing minimization step: 1903. Total energy = 915.4350 kcal/mol (911.1987 without restraints) Performing minimization step: 1904. Total energy = 915.3829 kcal/mol (911.1509 without restraints) Performing minimization step: 1905. Total energy = 915.3305 kcal/mol (911.1028 without restraints) Performing minimization step: 1906. Total energy = 915.2783 kcal/mol (911.0550 without restraints) Performing minimization step: 1907. Total energy = 915.2261 kcal/mol (911.0071 without restraints) Performing minimization step: 1908. Total energy = 915.1741 kcal/mol (910.9594 without restraints) Performing minimization step: 1909. Total energy = 915.1219 kcal/mol (910.9115 without restraints) Performing minimization step: 1910. Total energy = 915.0696 kcal/mol (910.8635 without restraints) Performing minimization step: 1911. Total energy = 915.0177 kcal/mol (910.8159 without restraints) Performing minimization step: 1912. Total energy = 914.9656 kcal/mol (910.7681 without restraints) Performing minimization step: 1913. Total energy = 914.9141 kcal/mol (910.7209 without restraints) Performing minimization step: 1914. Total energy = 914.8623 kcal/mol (910.6733 without restraints) Performing minimization step: 1915. Total energy = 914.8104 kcal/mol (910.6256 without restraints) Performing minimization step: 1916. Total energy = 914.7586 kcal/mol (910.5780 without restraints) Performing minimization step: 1917. Total energy = 914.7068 kcal/mol (910.5305 without restraints) Performing minimization step: 1918. Total energy = 914.6553 kcal/mol (910.4833 without restraints) Performing minimization step: 1919. Total energy = 914.6036 kcal/mol (910.4358 without restraints) Performing minimization step: 1920. Total energy = 914.5521 kcal/mol (910.3886 without restraints) Performing minimization step: 1921. Total energy = 914.5007 kcal/mol (910.3413 without restraints) Performing minimization step: 1922. Total energy = 914.4492 kcal/mol (910.2940 without restraints) Performing minimization step: 1923. Total energy = 914.3977 kcal/mol (910.2467 without restraints) Performing minimization step: 1924. Total energy = 914.3464 kcal/mol (910.1995 without restraints) Performing minimization step: 1925. Total energy = 914.2950 kcal/mol (910.1524 without restraints) Performing minimization step: 1926. Total energy = 914.2438 kcal/mol (910.1053 without restraints) Performing minimization step: 1927. Total energy = 914.1925 kcal/mol (910.0582 without restraints) Performing minimization step: 1928. Total energy = 914.1415 kcal/mol (910.0114 without restraints) Performing minimization step: 1929. Total energy = 914.0905 kcal/mol (909.9648 without restraints) Performing minimization step: 1930. Total energy = 914.0401 kcal/mol (909.9184 without restraints) Performing minimization step: 1931. Total energy = 913.9892 kcal/mol (909.8715 without restraints) Performing minimization step: 1932. Total energy = 913.9383 kcal/mol (909.8248 without restraints) Performing minimization step: 1933. Total energy = 913.8876 kcal/mol (909.7782 without restraints) Performing minimization step: 1934. Total energy = 913.8371 kcal/mol (909.7318 without restraints) Performing minimization step: 1935. Total energy = 913.7864 kcal/mol (909.6853 without restraints) Performing minimization step: 1936. Total energy = 913.7357 kcal/mol (909.6386 without restraints) Performing minimization step: 1937. Total energy = 913.6849 kcal/mol (909.5919 without restraints) Performing minimization step: 1938. Total energy = 913.6342 kcal/mol (909.5455 without restraints) Performing minimization step: 1939. Total energy = 913.5838 kcal/mol (909.4991 without restraints) Performing minimization step: 1940. Total energy = 913.5332 kcal/mol (909.4524 without restraints) Performing minimization step: 1941. Total energy = 913.4827 kcal/mol (909.4061 without restraints) Performing minimization step: 1942. Total energy = 913.4324 kcal/mol (909.3599 without restraints) Performing minimization step: 1943. Total energy = 913.3818 kcal/mol (909.3133 without restraints) Performing minimization step: 1944. Total energy = 913.3316 kcal/mol (909.2672 without restraints) Performing minimization step: 1945. Total energy = 913.2812 kcal/mol (909.2208 without restraints) Performing minimization step: 1946. Total energy = 913.2313 kcal/mol (909.1750 without restraints) Performing minimization step: 1947. Total energy = 913.1814 kcal/mol (909.1292 without restraints) Performing minimization step: 1948. Total energy = 913.1318 kcal/mol (909.0836 without restraints) Performing minimization step: 1949. Total energy = 913.0818 kcal/mol (909.0375 without restraints) Performing minimization step: 1950. Total energy = 913.0318 kcal/mol (908.9917 without restraints) Performing minimization step: 1951. Total energy = 912.9819 kcal/mol (908.9457 without restraints) Performing minimization step: 1952. Total energy = 912.9319 kcal/mol (908.8997 without restraints) Performing minimization step: 1953. Total energy = 912.8822 kcal/mol (908.8539 without restraints) Performing minimization step: 1954. Total energy = 912.8327 kcal/mol (908.8084 without restraints) Performing minimization step: 1955. Total energy = 912.7828 kcal/mol (908.7625 without restraints) Performing minimization step: 1956. Total energy = 912.7333 kcal/mol (908.7171 without restraints) Performing minimization step: 1957. Total energy = 912.6839 kcal/mol (908.6717 without restraints) Performing minimization step: 1958. Total energy = 912.6343 kcal/mol (908.6259 without restraints) Performing minimization step: 1959. Total energy = 912.5844 kcal/mol (908.5800 without restraints) Performing minimization step: 1960. Total energy = 912.5348 kcal/mol (908.5343 without restraints) Performing minimization step: 1961. Total energy = 912.4853 kcal/mol (908.4887 without restraints) Performing minimization step: 1962. Total energy = 912.4357 kcal/mol (908.4432 without restraints) Performing minimization step: 1963. Total energy = 912.3865 kcal/mol (908.3978 without restraints) Performing minimization step: 1964. Total energy = 912.3370 kcal/mol (908.3521 without restraints) Performing minimization step: 1965. Total energy = 912.2875 kcal/mol (908.3066 without restraints) Performing minimization step: 1966. Total energy = 912.2384 kcal/mol (908.2615 without restraints) Performing minimization step: 1967. Total energy = 912.1893 kcal/mol (908.2163 without restraints) Performing minimization step: 1968. Total energy = 912.1401 kcal/mol (908.1710 without restraints) Performing minimization step: 1969. Total energy = 912.0907 kcal/mol (908.1255 without restraints) Performing minimization step: 1970. Total energy = 912.0418 kcal/mol (908.0807 without restraints) Performing minimization step: 1971. Total energy = 911.9932 kcal/mol (908.0357 without restraints) Performing minimization step: 1972. Total energy = 911.9442 kcal/mol (907.9906 without restraints) Performing minimization step: 1973. Total energy = 911.8952 kcal/mol (907.9455 without restraints) Performing minimization step: 1974. Total energy = 911.8463 kcal/mol (907.9004 without restraints) Performing minimization step: 1975. Total energy = 911.7974 kcal/mol (907.8554 without restraints) Performing minimization step: 1976. Total energy = 911.7489 kcal/mol (907.8107 without restraints) Performing minimization step: 1977. Total energy = 911.7008 kcal/mol (907.7664 without restraints) Performing minimization step: 1978. Total energy = 911.6520 kcal/mol (907.7215 without restraints) Performing minimization step: 1979. Total energy = 911.6039 kcal/mol (907.6773 without restraints) Performing minimization step: 1980. Total energy = 911.5556 kcal/mol (907.6328 without restraints) Performing minimization step: 1981. Total energy = 911.5070 kcal/mol (907.5880 without restraints) Performing minimization step: 1982. Total energy = 911.4584 kcal/mol (907.5432 without restraints) Performing minimization step: 1983. Total energy = 911.4101 kcal/mol (907.4987 without restraints) Performing minimization step: 1984. Total energy = 911.3617 kcal/mol (907.4540 without restraints) Performing minimization step: 1985. Total energy = 911.3133 kcal/mol (907.4094 without restraints) Performing minimization step: 1986. Total energy = 911.2651 kcal/mol (907.3650 without restraints) Performing minimization step: 1987. Total energy = 911.2171 kcal/mol (907.3208 without restraints) Performing minimization step: 1988. Total energy = 911.1689 kcal/mol (907.2763 without restraints) Performing minimization step: 1989. Total energy = 911.1206 kcal/mol (907.2318 without restraints) Performing minimization step: 1990. Total energy = 911.0726 kcal/mol (907.1875 without restraints) Performing minimization step: 1991. Total energy = 911.0252 kcal/mol (907.1438 without restraints) Performing minimization step: 1992. Total energy = 910.9778 kcal/mol (907.1002 without restraints) Performing minimization step: 1993. Total energy = 910.9293 kcal/mol (907.0554 without restraints) Performing minimization step: 1994. Total energy = 910.8821 kcal/mol (907.0121 without restraints) Performing minimization step: 1995. Total energy = 910.8344 kcal/mol (906.9681 without restraints) Performing minimization step: 1996. Total energy = 910.7867 kcal/mol (906.9240 without restraints) Performing minimization step: 1997. Total energy = 910.7388 kcal/mol (906.8798 without restraints) Performing minimization step: 1998. Total energy = 910.6909 kcal/mol (906.8356 without restraints) Performing minimization step: 1999. Total energy = 910.6432 kcal/mol (906.7915 without restraints) Performing minimization step: 2000. Total energy = 910.5954 kcal/mol (906.7475 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 910.5477 kcal/mol (906.7034 without restraints) Performing minimization step: 2002. Total energy = 910.5000 kcal/mol (906.6594 without restraints) Performing minimization step: 2003. Total energy = 910.4524 kcal/mol (906.6155 without restraints) Performing minimization step: 2004. Total energy = 910.4051 kcal/mol (906.5719 without restraints) Performing minimization step: 2005. Total energy = 910.3576 kcal/mol (906.5280 without restraints) Performing minimization step: 2006. Total energy = 910.3101 kcal/mol (906.4841 without restraints) Performing minimization step: 2007. Total energy = 910.2628 kcal/mol (906.4405 without restraints) Performing minimization step: 2008. Total energy = 910.2155 kcal/mol (906.3968 without restraints) Performing minimization step: 2009. Total energy = 910.1682 kcal/mol (906.3531 without restraints) Performing minimization step: 2010. Total energy = 910.1209 kcal/mol (906.3094 without restraints) Performing minimization step: 2011. Total energy = 910.0736 kcal/mol (906.2657 without restraints) Performing minimization step: 2012. Total energy = 910.0267 kcal/mol (906.2225 without restraints) Performing minimization step: 2013. Total energy = 909.9796 kcal/mol (906.1789 without restraints) Performing minimization step: 2014. Total energy = 909.9328 kcal/mol (906.1357 without restraints) Performing minimization step: 2015. Total energy = 909.8859 kcal/mol (906.0924 without restraints) Performing minimization step: 2016. Total energy = 909.8387 kcal/mol (906.0488 without restraints) Performing minimization step: 2017. Total energy = 909.7917 kcal/mol (906.0054 without restraints) Performing minimization step: 2018. Total energy = 909.7447 kcal/mol (905.9619 without restraints) Performing minimization step: 2019. Total energy = 909.6978 kcal/mol (905.9187 without restraints) Performing minimization step: 2020. Total energy = 909.6510 kcal/mol (905.8754 without restraints) Performing minimization step: 2021. Total energy = 909.6041 kcal/mol (905.8320 without restraints) Performing minimization step: 2022. Total energy = 909.5573 kcal/mol (905.7887 without restraints) Performing minimization step: 2023. Total energy = 909.5106 kcal/mol (905.7455 without restraints) Performing minimization step: 2024. Total energy = 909.4641 kcal/mol (905.7026 without restraints) Performing minimization step: 2025. Total energy = 909.4174 kcal/mol (905.6594 without restraints) Performing minimization step: 2026. Total energy = 909.3708 kcal/mol (905.6165 without restraints) Performing minimization step: 2027. Total energy = 909.3246 kcal/mol (905.5736 without restraints) Performing minimization step: 2028. Total energy = 909.2780 kcal/mol (905.5307 without restraints) Performing minimization step: 2029. Total energy = 909.2316 kcal/mol (905.4876 without restraints) Performing minimization step: 2030. Total energy = 909.1851 kcal/mol (905.4446 without restraints) Performing minimization step: 2031. Total energy = 909.1386 kcal/mol (905.4016 without restraints) Performing minimization step: 2032. Total energy = 909.0923 kcal/mol (905.3587 without restraints) Performing minimization step: 2033. Total energy = 909.0460 kcal/mol (905.3160 without restraints) Performing minimization step: 2034. Total energy = 908.9998 kcal/mol (905.2732 without restraints) Performing minimization step: 2035. Total energy = 908.9534 kcal/mol (905.2303 without restraints) Performing minimization step: 2036. Total energy = 908.9077 kcal/mol (905.1882 without restraints) Performing minimization step: 2037. Total energy = 908.8618 kcal/mol (905.1455 without restraints) Performing minimization step: 2038. Total energy = 908.8158 kcal/mol (905.1030 without restraints) Performing minimization step: 2039. Total energy = 908.7696 kcal/mol (905.0603 without restraints) Performing minimization step: 2040. Total energy = 908.7237 kcal/mol (905.0177 without restraints) Performing minimization step: 2041. Total energy = 908.6778 kcal/mol (904.9753 without restraints) Performing minimization step: 2042. Total energy = 908.6320 kcal/mol (904.9328 without restraints) Performing minimization step: 2043. Total energy = 908.5860 kcal/mol (904.8903 without restraints) Performing minimization step: 2044. Total energy = 908.5401 kcal/mol (904.8478 without restraints) Performing minimization step: 2045. Total energy = 908.4944 kcal/mol (904.8055 without restraints) Performing minimization step: 2046. Total energy = 908.4488 kcal/mol (904.7633 without restraints) Performing minimization step: 2047. Total energy = 908.4032 kcal/mol (904.7211 without restraints) Performing minimization step: 2048. Total energy = 908.3573 kcal/mol (904.6786 without restraints) Performing minimization step: 2049. Total energy = 908.3116 kcal/mol (904.6361 without restraints) Performing minimization step: 2050. Total energy = 908.2658 kcal/mol (904.5938 without restraints) Performing minimization step: 2051. Total energy = 908.2201 kcal/mol (904.5515 without restraints) Performing minimization step: 2052. Total energy = 908.1746 kcal/mol (904.5092 without restraints) Performing minimization step: 2053. Total energy = 908.1295 kcal/mol (904.4678 without restraints) Performing minimization step: 2054. Total energy = 908.0845 kcal/mol (904.4259 without restraints) Performing minimization step: 2055. Total energy = 908.0394 kcal/mol (904.3841 without restraints) Performing minimization step: 2056. Total energy = 907.9940 kcal/mol (904.3419 without restraints) Performing minimization step: 2057. Total energy = 907.9487 kcal/mol (904.3000 without restraints) Performing minimization step: 2058. Total energy = 907.9036 kcal/mol (904.2583 without restraints) Performing minimization step: 2059. Total energy = 907.8583 kcal/mol (904.2162 without restraints) Performing minimization step: 2060. Total energy = 907.8130 kcal/mol (904.1742 without restraints) Performing minimization step: 2061. Total energy = 907.7680 kcal/mol (904.1325 without restraints) Performing minimization step: 2062. Total energy = 907.7227 kcal/mol (904.0905 without restraints) Performing minimization step: 2063. Total energy = 907.6775 kcal/mol (904.0485 without restraints) Performing minimization step: 2064. Total energy = 907.6323 kcal/mol (904.0066 without restraints) Performing minimization step: 2065. Total energy = 907.5873 kcal/mol (903.9649 without restraints) Performing minimization step: 2066. Total energy = 907.5423 kcal/mol (903.9232 without restraints) Performing minimization step: 2067. Total energy = 907.4975 kcal/mol (903.8816 without restraints) Performing minimization step: 2068. Total energy = 907.4524 kcal/mol (903.8398 without restraints) Performing minimization step: 2069. Total energy = 907.4076 kcal/mol (903.7982 without restraints) Performing minimization step: 2070. Total energy = 907.3626 kcal/mol (903.7565 without restraints) Performing minimization step: 2071. Total energy = 907.3177 kcal/mol (903.7148 without restraints) Performing minimization step: 2072. Total energy = 907.2731 kcal/mol (903.6734 without restraints) Performing minimization step: 2073. Total energy = 907.2282 kcal/mol (903.6317 without restraints) Performing minimization step: 2074. Total energy = 907.1833 kcal/mol (903.5901 without restraints) Performing minimization step: 2075. Total energy = 907.1385 kcal/mol (903.5485 without restraints) Performing minimization step: 2076. Total energy = 907.0941 kcal/mol (903.5073 without restraints) Performing minimization step: 2077. Total energy = 907.0496 kcal/mol (903.4659 without restraints) Performing minimization step: 2078. Total energy = 907.0049 kcal/mol (903.4244 without restraints) Performing minimization step: 2079. Total energy = 906.9602 kcal/mol (903.3829 without restraints) Performing minimization step: 2080. Total energy = 906.9156 kcal/mol (903.3414 without restraints) Performing minimization step: 2081. Total energy = 906.8707 kcal/mol (903.2997 without restraints) Performing minimization step: 2082. Total energy = 906.8262 kcal/mol (903.2583 without restraints) Performing minimization step: 2083. Total energy = 906.7816 kcal/mol (903.2169 without restraints) Performing minimization step: 2084. Total energy = 906.7373 kcal/mol (903.1757 without restraints) Performing minimization step: 2085. Total energy = 906.6927 kcal/mol (903.1343 without restraints) Performing minimization step: 2086. Total energy = 906.6487 kcal/mol (903.0934 without restraints) Performing minimization step: 2087. Total energy = 906.6044 kcal/mol (903.0523 without restraints) Performing minimization step: 2088. Total energy = 906.5602 kcal/mol (903.0114 without restraints) Performing minimization step: 2089. Total energy = 906.5159 kcal/mol (902.9700 without restraints) Performing minimization step: 2090. Total energy = 906.4715 kcal/mol (902.9287 without restraints) Performing minimization step: 2091. Total energy = 906.4274 kcal/mol (902.8879 without restraints) Performing minimization step: 2092. Total energy = 906.3834 kcal/mol (902.8468 without restraints) Performing minimization step: 2093. Total energy = 906.3392 kcal/mol (902.8057 without restraints) Performing minimization step: 2094. Total energy = 906.2950 kcal/mol (902.7646 without restraints) Performing minimization step: 2095. Total energy = 906.2509 kcal/mol (902.7236 without restraints) Performing minimization step: 2096. Total energy = 906.2071 kcal/mol (902.6829 without restraints) Performing minimization step: 2097. Total energy = 906.1631 kcal/mol (902.6419 without restraints) Performing minimization step: 2098. Total energy = 906.1191 kcal/mol (902.6010 without restraints) Performing minimization step: 2099. Total energy = 906.0753 kcal/mol (902.5604 without restraints) Performing minimization step: 2100. Total energy = 906.0315 kcal/mol (902.5195 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 905.9876 kcal/mol (902.4786 without restraints) Performing minimization step: 2102. Total energy = 905.9436 kcal/mol (902.4377 without restraints) Performing minimization step: 2103. Total energy = 905.8997 kcal/mol (902.3968 without restraints) Performing minimization step: 2104. Total energy = 905.8559 kcal/mol (902.3559 without restraints) Performing minimization step: 2105. Total energy = 905.8121 kcal/mol (902.3153 without restraints) Performing minimization step: 2106. Total energy = 905.7684 kcal/mol (902.2745 without restraints) Performing minimization step: 2107. Total energy = 905.7246 kcal/mol (902.2337 without restraints) Performing minimization step: 2108. Total energy = 905.6813 kcal/mol (902.1934 without restraints) Performing minimization step: 2109. Total energy = 905.6375 kcal/mol (902.1526 without restraints) Performing minimization step: 2110. Total energy = 905.5938 kcal/mol (902.1119 without restraints) Performing minimization step: 2111. Total energy = 905.5504 kcal/mol (902.0714 without restraints) Performing minimization step: 2112. Total energy = 905.5067 kcal/mol (902.0307 without restraints) Performing minimization step: 2113. Total energy = 905.4635 kcal/mol (901.9905 without restraints) Performing minimization step: 2114. Total energy = 905.4200 kcal/mol (901.9500 without restraints) Performing minimization step: 2115. Total energy = 905.3768 kcal/mol (901.9097 without restraints) Performing minimization step: 2116. Total energy = 905.3334 kcal/mol (901.8692 without restraints) Performing minimization step: 2117. Total energy = 905.2898 kcal/mol (901.8286 without restraints) Performing minimization step: 2118. Total energy = 905.2464 kcal/mol (901.7881 without restraints) Performing minimization step: 2119. Total energy = 905.2031 kcal/mol (901.7478 without restraints) Performing minimization step: 2120. Total energy = 905.1599 kcal/mol (901.7075 without restraints) Performing minimization step: 2121. Total energy = 905.1166 kcal/mol (901.6671 without restraints) Performing minimization step: 2122. Total energy = 905.0735 kcal/mol (901.6269 without restraints) Performing minimization step: 2123. Total energy = 905.0303 kcal/mol (901.5867 without restraints) Performing minimization step: 2124. Total energy = 904.9874 kcal/mol (901.5466 without restraints) Performing minimization step: 2125. Total energy = 904.9443 kcal/mol (901.5064 without restraints) Performing minimization step: 2126. Total energy = 904.9011 kcal/mol (901.4662 without restraints) Performing minimization step: 2127. Total energy = 904.8578 kcal/mol (901.4257 without restraints) Performing minimization step: 2128. Total energy = 904.8147 kcal/mol (901.3855 without restraints) Performing minimization step: 2129. Total energy = 904.7717 kcal/mol (901.3453 without restraints) Performing minimization step: 2130. Total energy = 904.7288 kcal/mol (901.3053 without restraints) Performing minimization step: 2131. Total energy = 904.6857 kcal/mol (901.2650 without restraints) Performing minimization step: 2132. Total energy = 904.6427 kcal/mol (901.2250 without restraints) Performing minimization step: 2133. Total energy = 904.6000 kcal/mol (901.1850 without restraints) Performing minimization step: 2134. Total energy = 904.5573 kcal/mol (901.1451 without restraints) Performing minimization step: 2135. Total energy = 904.5145 kcal/mol (901.1052 without restraints) Performing minimization step: 2136. Total energy = 904.4721 kcal/mol (901.0656 without restraints) Performing minimization step: 2137. Total energy = 904.4295 kcal/mol (901.0259 without restraints) Performing minimization step: 2138. Total energy = 904.3867 kcal/mol (900.9859 without restraints) Performing minimization step: 2139. Total energy = 904.3439 kcal/mol (900.9458 without restraints) Performing minimization step: 2140. Total energy = 904.3012 kcal/mol (900.9060 without restraints) Performing minimization step: 2141. Total energy = 904.2585 kcal/mol (900.8660 without restraints) Performing minimization step: 2142. Total energy = 904.2157 kcal/mol (900.8260 without restraints) Performing minimization step: 2143. Total energy = 904.1729 kcal/mol (900.7860 without restraints) Performing minimization step: 2144. Total energy = 904.1304 kcal/mol (900.7463 without restraints) Performing minimization step: 2145. Total energy = 904.0879 kcal/mol (900.7066 without restraints) Performing minimization step: 2146. Total energy = 904.0451 kcal/mol (900.6666 without restraints) Performing minimization step: 2147. Total energy = 904.0025 kcal/mol (900.6267 without restraints) Performing minimization step: 2148. Total energy = 903.9603 kcal/mol (900.5873 without restraints) Performing minimization step: 2149. Total energy = 903.9179 kcal/mol (900.5476 without restraints) Performing minimization step: 2150. Total energy = 903.8756 kcal/mol (900.5080 without restraints) Performing minimization step: 2151. Total energy = 903.8330 kcal/mol (900.4682 without restraints) Performing minimization step: 2152. Total energy = 903.7907 kcal/mol (900.4286 without restraints) Performing minimization step: 2153. Total energy = 903.7482 kcal/mol (900.3888 without restraints) Performing minimization step: 2154. Total energy = 903.7057 kcal/mol (900.3490 without restraints) Performing minimization step: 2155. Total energy = 903.6635 kcal/mol (900.3095 without restraints) Performing minimization step: 2156. Total energy = 903.6212 kcal/mol (900.2700 without restraints) Performing minimization step: 2157. Total energy = 903.5788 kcal/mol (900.2302 without restraints) Performing minimization step: 2158. Total energy = 903.5364 kcal/mol (900.1905 without restraints) Performing minimization step: 2159. Total energy = 903.4942 kcal/mol (900.1510 without restraints) Performing minimization step: 2160. Total energy = 903.4518 kcal/mol (900.1114 without restraints) Performing minimization step: 2161. Total energy = 903.4097 kcal/mol (900.0718 without restraints) Performing minimization step: 2162. Total energy = 903.3672 kcal/mol (900.0320 without restraints) Performing minimization step: 2163. Total energy = 903.3247 kcal/mol (899.9922 without restraints) Performing minimization step: 2164. Total energy = 903.2825 kcal/mol (899.9527 without restraints) Performing minimization step: 2165. Total energy = 903.2413 kcal/mol (899.9141 without restraints) Performing minimization step: 2166. Total energy = 903.1991 kcal/mol (899.8745 without restraints) Performing minimization step: 2167. Total energy = 903.1569 kcal/mol (899.8350 without restraints) Performing minimization step: 2168. Total energy = 903.1149 kcal/mol (899.7957 without restraints) Performing minimization step: 2169. Total energy = 903.0728 kcal/mol (899.7562 without restraints) Performing minimization step: 2170. Total energy = 903.0309 kcal/mol (899.7169 without restraints) Performing minimization step: 2171. Total energy = 902.9889 kcal/mol (899.6775 without restraints) Performing minimization step: 2172. Total energy = 902.9468 kcal/mol (899.6381 without restraints) Performing minimization step: 2173. Total energy = 902.9050 kcal/mol (899.5990 without restraints) Performing minimization step: 2174. Total energy = 902.8638 kcal/mol (899.5602 without restraints) Performing minimization step: 2175. Total energy = 902.8220 kcal/mol (899.5210 without restraints) Performing minimization step: 2176. Total energy = 902.7806 kcal/mol (899.4822 without restraints) Performing minimization step: 2177. Total energy = 902.7387 kcal/mol (899.4429 without restraints) Performing minimization step: 2178. Total energy = 902.6969 kcal/mol (899.4037 without restraints) Performing minimization step: 2179. Total energy = 902.6551 kcal/mol (899.3643 without restraints) Performing minimization step: 2180. Total energy = 902.6131 kcal/mol (899.3250 without restraints) Performing minimization step: 2181. Total energy = 902.5713 kcal/mol (899.2858 without restraints) Performing minimization step: 2182. Total energy = 902.5298 kcal/mol (899.2467 without restraints) Performing minimization step: 2183. Total energy = 902.4880 kcal/mol (899.2075 without restraints) Performing minimization step: 2184. Total energy = 902.4463 kcal/mol (899.1683 without restraints) Performing minimization step: 2185. Total energy = 902.4049 kcal/mol (899.1295 without restraints) Performing minimization step: 2186. Total energy = 902.3631 kcal/mol (899.0902 without restraints) Performing minimization step: 2187. Total energy = 902.3213 kcal/mol (899.0510 without restraints) Performing minimization step: 2188. Total energy = 902.2796 kcal/mol (899.0119 without restraints) Performing minimization step: 2189. Total energy = 902.2382 kcal/mol (898.9729 without restraints) Performing minimization step: 2190. Total energy = 902.1965 kcal/mol (898.9337 without restraints) Performing minimization step: 2191. Total energy = 902.1549 kcal/mol (898.8945 without restraints) Performing minimization step: 2192. Total energy = 902.1132 kcal/mol (898.8554 without restraints) Performing minimization step: 2193. Total energy = 902.0717 kcal/mol (898.8164 without restraints) Performing minimization step: 2194. Total energy = 902.0304 kcal/mol (898.7777 without restraints) Performing minimization step: 2195. Total energy = 901.9891 kcal/mol (898.7387 without restraints) Performing minimization step: 2196. Total energy = 901.9476 kcal/mol (898.6997 without restraints) Performing minimization step: 2197. Total energy = 901.9061 kcal/mol (898.6607 without restraints) Performing minimization step: 2198. Total energy = 901.8647 kcal/mol (898.6219 without restraints) Performing minimization step: 2199. Total energy = 901.8235 kcal/mol (898.5829 without restraints) Performing minimization step: 2200. Total energy = 901.7819 kcal/mol (898.5439 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 901.7406 kcal/mol (898.5050 without restraints) Performing minimization step: 2202. Total energy = 901.6991 kcal/mol (898.4659 without restraints) Performing minimization step: 2203. Total energy = 901.6576 kcal/mol (898.4269 without restraints) Performing minimization step: 2204. Total energy = 901.6159 kcal/mol (898.3876 without restraints) Performing minimization step: 2205. Total energy = 901.5745 kcal/mol (898.3485 without restraints) Performing minimization step: 2206. Total energy = 901.5338 kcal/mol (898.3104 without restraints) Performing minimization step: 2207. Total energy = 901.4926 kcal/mol (898.2715 without restraints) Performing minimization step: 2208. Total energy = 901.4512 kcal/mol (898.2325 without restraints) Performing minimization step: 2209. Total energy = 901.4098 kcal/mol (898.1935 without restraints) Performing minimization step: 2210. Total energy = 901.3687 kcal/mol (898.1548 without restraints) Performing minimization step: 2211. Total energy = 901.3276 kcal/mol (898.1160 without restraints) Performing minimization step: 2212. Total energy = 901.2864 kcal/mol (898.0773 without restraints) Performing minimization step: 2213. Total energy = 901.2451 kcal/mol (898.0383 without restraints) Performing minimization step: 2214. Total energy = 901.2040 kcal/mol (897.9996 without restraints) Performing minimization step: 2215. Total energy = 901.1632 kcal/mol (897.9611 without restraints) Performing minimization step: 2216. Total energy = 901.1219 kcal/mol (897.9222 without restraints) Performing minimization step: 2217. Total energy = 901.0809 kcal/mol (897.8835 without restraints) Performing minimization step: 2218. Total energy = 901.0397 kcal/mol (897.8446 without restraints) Performing minimization step: 2219. Total energy = 900.9985 kcal/mol (897.8058 without restraints) Performing minimization step: 2220. Total energy = 900.9573 kcal/mol (897.7669 without restraints) Performing minimization step: 2221. Total energy = 900.9161 kcal/mol (897.7280 without restraints) Performing minimization step: 2222. Total energy = 900.8751 kcal/mol (897.6894 without restraints) Performing minimization step: 2223. Total energy = 900.8340 kcal/mol (897.6506 without restraints) Performing minimization step: 2224. Total energy = 900.7931 kcal/mol (897.6120 without restraints) Performing minimization step: 2225. Total energy = 900.7522 kcal/mol (897.5734 without restraints) Performing minimization step: 2226. Total energy = 900.7110 kcal/mol (897.5346 without restraints) Performing minimization step: 2227. Total energy = 900.6699 kcal/mol (897.4958 without restraints) Performing minimization step: 2228. Total energy = 900.6292 kcal/mol (897.4575 without restraints) Performing minimization step: 2229. Total energy = 900.5882 kcal/mol (897.4187 without restraints) Performing minimization step: 2230. Total energy = 900.5472 kcal/mol (897.3799 without restraints) Performing minimization step: 2231. Total energy = 900.5063 kcal/mol (897.3413 without restraints) Performing minimization step: 2232. Total energy = 900.4653 kcal/mol (897.3025 without restraints) Performing minimization step: 2233. Total energy = 900.4243 kcal/mol (897.2638 without restraints) Performing minimization step: 2234. Total energy = 900.3835 kcal/mol (897.2252 without restraints) Performing minimization step: 2235. Total energy = 900.3425 kcal/mol (897.1865 without restraints) Performing minimization step: 2236. Total energy = 900.3017 kcal/mol (897.1479 without restraints) Performing minimization step: 2237. Total energy = 900.2610 kcal/mol (897.1095 without restraints) Performing minimization step: 2238. Total energy = 900.2203 kcal/mol (897.0710 without restraints) Performing minimization step: 2239. Total energy = 900.1803 kcal/mol (897.0332 without restraints) Performing minimization step: 2240. Total energy = 900.1394 kcal/mol (896.9945 without restraints) Performing minimization step: 2241. Total energy = 900.0984 kcal/mol (896.9558 without restraints) Performing minimization step: 2242. Total energy = 900.0579 kcal/mol (896.9175 without restraints) Performing minimization step: 2243. Total energy = 900.0171 kcal/mol (896.8790 without restraints) Performing minimization step: 2244. Total energy = 899.9761 kcal/mol (896.8401 without restraints) Performing minimization step: 2245. Total energy = 899.9353 kcal/mol (896.8015 without restraints) Performing minimization step: 2246. Total energy = 899.8944 kcal/mol (896.7628 without restraints) Performing minimization step: 2247. Total energy = 899.8535 kcal/mol (896.7241 without restraints) Performing minimization step: 2248. Total energy = 899.8127 kcal/mol (896.6855 without restraints) Performing minimization step: 2249. Total energy = 899.7721 kcal/mol (896.6470 without restraints) Performing minimization step: 2250. Total energy = 899.7314 kcal/mol (896.6086 without restraints) Performing minimization step: 2251. Total energy = 899.6905 kcal/mol (896.5697 without restraints) Performing minimization step: 2252. Total energy = 899.6500 kcal/mol (896.5315 without restraints) Performing minimization step: 2253. Total energy = 899.6093 kcal/mol (896.4929 without restraints) Performing minimization step: 2254. Total energy = 899.5690 kcal/mol (896.4549 without restraints) Performing minimization step: 2255. Total energy = 899.5287 kcal/mol (896.4166 without restraints) Performing minimization step: 2256. Total energy = 899.4879 kcal/mol (896.3779 without restraints) Performing minimization step: 2257. Total energy = 899.4478 kcal/mol (896.3401 without restraints) Performing minimization step: 2258. Total energy = 899.4073 kcal/mol (896.3017 without restraints) Performing minimization step: 2259. Total energy = 899.3671 kcal/mol (896.2635 without restraints) Performing minimization step: 2260. Total energy = 899.3264 kcal/mol (896.2249 without restraints) Performing minimization step: 2261. Total energy = 899.2855 kcal/mol (896.1861 without restraints) Performing minimization step: 2262. Total energy = 899.2452 kcal/mol (896.1480 without restraints) Performing minimization step: 2263. Total energy = 899.2046 kcal/mol (896.1094 without restraints) Performing minimization step: 2264. Total energy = 899.1638 kcal/mol (896.0708 without restraints) Performing minimization step: 2265. Total energy = 899.1235 kcal/mol (896.0325 without restraints) Performing minimization step: 2266. Total energy = 899.0830 kcal/mol (895.9941 without restraints) Performing minimization step: 2267. Total energy = 899.0424 kcal/mol (895.9556 without restraints) Performing minimization step: 2268. Total energy = 899.0020 kcal/mol (895.9172 without restraints) Performing minimization step: 2269. Total energy = 898.9613 kcal/mol (895.8787 without restraints) Performing minimization step: 2270. Total energy = 898.9207 kcal/mol (895.8401 without restraints) Performing minimization step: 2271. Total energy = 898.8801 kcal/mol (895.8015 without restraints) Performing minimization step: 2272. Total energy = 898.8397 kcal/mol (895.7632 without restraints) Performing minimization step: 2273. Total energy = 898.7987 kcal/mol (895.7243 without restraints) Performing minimization step: 2274. Total energy = 898.7582 kcal/mol (895.6858 without restraints) Performing minimization step: 2275. Total energy = 898.7174 kcal/mol (895.6470 without restraints) Performing minimization step: 2276. Total energy = 898.6769 kcal/mol (895.6085 without restraints) Performing minimization step: 2277. Total energy = 898.6364 kcal/mol (895.5701 without restraints) Performing minimization step: 2278. Total energy = 898.5960 kcal/mol (895.5317 without restraints) Performing minimization step: 2279. Total energy = 898.5558 kcal/mol (895.4935 without restraints) Performing minimization step: 2280. Total energy = 898.5152 kcal/mol (895.4550 without restraints) Performing minimization step: 2281. Total energy = 898.4747 kcal/mol (895.4165 without restraints) Performing minimization step: 2282. Total energy = 898.4343 kcal/mol (895.3782 without restraints) Performing minimization step: 2283. Total energy = 898.3940 kcal/mol (895.3399 without restraints) Performing minimization step: 2284. Total energy = 898.3538 kcal/mol (895.3015 without restraints) Performing minimization step: 2285. Total energy = 898.3135 kcal/mol (895.2632 without restraints) Performing minimization step: 2286. Total energy = 898.2737 kcal/mol (895.2256 without restraints) Performing minimization step: 2287. Total energy = 898.2336 kcal/mol (895.1873 without restraints) Performing minimization step: 2288. Total energy = 898.1931 kcal/mol (895.1488 without restraints) Performing minimization step: 2289. Total energy = 898.1527 kcal/mol (895.1103 without restraints) Performing minimization step: 2290. Total energy = 898.1122 kcal/mol (895.0718 without restraints) Performing minimization step: 2291. Total energy = 898.0717 kcal/mol (895.0333 without restraints) Performing minimization step: 2292. Total energy = 898.0313 kcal/mol (894.9948 without restraints) Performing minimization step: 2293. Total energy = 897.9908 kcal/mol (894.9563 without restraints) Performing minimization step: 2294. Total energy = 897.9504 kcal/mol (894.9178 without restraints) Performing minimization step: 2295. Total energy = 897.9098 kcal/mol (894.8792 without restraints) Performing minimization step: 2296. Total energy = 897.8693 kcal/mol (894.8407 without restraints) Performing minimization step: 2297. Total energy = 897.8290 kcal/mol (894.8022 without restraints) Performing minimization step: 2298. Total energy = 897.7886 kcal/mol (894.7637 without restraints) Performing minimization step: 2299. Total energy = 897.7481 kcal/mol (894.7252 without restraints) Performing minimization step: 2300. Total energy = 897.7079 kcal/mol (894.6869 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 897.6675 kcal/mol (894.6484 without restraints) Performing minimization step: 2302. Total energy = 897.6274 kcal/mol (894.6102 without restraints) Performing minimization step: 2303. Total energy = 897.5870 kcal/mol (894.5717 without restraints) Performing minimization step: 2304. Total energy = 897.5464 kcal/mol (894.5330 without restraints) Performing minimization step: 2305. Total energy = 897.5064 kcal/mol (894.4950 without restraints) Performing minimization step: 2306. Total energy = 897.4662 kcal/mol (894.4566 without restraints) Performing minimization step: 2307. Total energy = 897.4261 kcal/mol (894.4183 without restraints) Performing minimization step: 2308. Total energy = 897.3857 kcal/mol (894.3798 without restraints) Performing minimization step: 2309. Total energy = 897.3454 kcal/mol (894.3414 without restraints) Performing minimization step: 2310. Total energy = 897.3051 kcal/mol (894.3029 without restraints) Performing minimization step: 2311. Total energy = 897.2648 kcal/mol (894.2645 without restraints) Performing minimization step: 2312. Total energy = 897.2246 kcal/mol (894.2262 without restraints) Performing minimization step: 2313. Total energy = 897.1845 kcal/mol (894.1879 without restraints) Performing minimization step: 2314. Total energy = 897.1444 kcal/mol (894.1497 without restraints) Performing minimization step: 2315. Total energy = 897.1040 kcal/mol (894.1111 without restraints) Performing minimization step: 2316. Total energy = 897.0637 kcal/mol (894.0726 without restraints) Performing minimization step: 2317. Total energy = 897.0234 kcal/mol (894.0342 without restraints) Performing minimization step: 2318. Total energy = 896.9831 kcal/mol (893.9958 without restraints) Performing minimization step: 2319. Total energy = 896.9429 kcal/mol (893.9574 without restraints) Performing minimization step: 2320. Total energy = 896.9025 kcal/mol (893.9186 without restraints) Performing minimization step: 2321. Total energy = 896.8621 kcal/mol (893.8801 without restraints) Performing minimization step: 2322. Total energy = 896.8220 kcal/mol (893.8418 without restraints) Performing minimization step: 2323. Total energy = 896.7816 kcal/mol (893.8033 without restraints) Performing minimization step: 2324. Total energy = 896.7413 kcal/mol (893.7648 without restraints) Performing minimization step: 2325. Total energy = 896.7010 kcal/mol (893.7262 without restraints) Performing minimization step: 2326. Total energy = 896.6607 kcal/mol (893.6877 without restraints) Performing minimization step: 2327. Total energy = 896.6203 kcal/mol (893.6492 without restraints) Performing minimization step: 2328. Total energy = 896.5805 kcal/mol (893.6111 without restraints) Performing minimization step: 2329. Total energy = 896.5405 kcal/mol (893.5728 without restraints) Performing minimization step: 2330. Total energy = 896.5005 kcal/mol (893.5347 without restraints) Performing minimization step: 2331. Total energy = 896.4602 kcal/mol (893.4961 without restraints) Performing minimization step: 2332. Total energy = 896.4200 kcal/mol (893.4576 without restraints) Performing minimization step: 2333. Total energy = 896.3799 kcal/mol (893.4193 without restraints) Performing minimization step: 2334. Total energy = 896.3396 kcal/mol (893.3809 without restraints) Performing minimization step: 2335. Total energy = 896.2996 kcal/mol (893.3426 without restraints) Performing minimization step: 2336. Total energy = 896.2596 kcal/mol (893.3043 without restraints) Performing minimization step: 2337. Total energy = 896.2193 kcal/mol (893.2657 without restraints) Performing minimization step: 2338. Total energy = 896.1792 kcal/mol (893.2274 without restraints) Performing minimization step: 2339. Total energy = 896.1395 kcal/mol (893.1895 without restraints) Performing minimization step: 2340. Total energy = 896.0994 kcal/mol (893.1511 without restraints) Performing minimization step: 2341. Total energy = 896.0591 kcal/mol (893.1125 without restraints) Performing minimization step: 2342. Total energy = 896.0189 kcal/mol (893.0740 without restraints) Performing minimization step: 2343. Total energy = 895.9789 kcal/mol (893.0357 without restraints) Performing minimization step: 2344. Total energy = 895.9386 kcal/mol (892.9971 without restraints) Performing minimization step: 2345. Total energy = 895.8983 kcal/mol (892.9585 without restraints) Performing minimization step: 2346. Total energy = 895.8580 kcal/mol (892.9199 without restraints) Performing minimization step: 2347. Total energy = 895.8177 kcal/mol (892.8813 without restraints) Performing minimization step: 2348. Total energy = 895.7776 kcal/mol (892.8429 without restraints) Performing minimization step: 2349. Total energy = 895.7375 kcal/mol (892.8045 without restraints) Performing minimization step: 2350. Total energy = 895.6973 kcal/mol (892.7660 without restraints) Performing minimization step: 2351. Total energy = 895.6575 kcal/mol (892.7278 without restraints) Performing minimization step: 2352. Total energy = 895.6174 kcal/mol (892.6894 without restraints) Performing minimization step: 2353. Total energy = 895.5771 kcal/mol (892.6508 without restraints) Performing minimization step: 2354. Total energy = 895.5367 kcal/mol (892.6121 without restraints) Performing minimization step: 2355. Total energy = 895.4965 kcal/mol (892.5735 without restraints) Performing minimization step: 2356. Total energy = 895.4562 kcal/mol (892.5349 without restraints) Performing minimization step: 2357. Total energy = 895.4160 kcal/mol (892.4965 without restraints) Performing minimization step: 2358. Total energy = 895.3761 kcal/mol (892.4581 without restraints) Performing minimization step: 2359. Total energy = 895.3363 kcal/mol (892.4199 without restraints) Performing minimization step: 2360. Total energy = 895.2961 kcal/mol (892.3814 without restraints) Performing minimization step: 2361. Total energy = 895.2558 kcal/mol (892.3427 without restraints) Performing minimization step: 2362. Total energy = 895.2155 kcal/mol (892.3041 without restraints) Performing minimization step: 2363. Total energy = 895.1753 kcal/mol (892.2654 without restraints) Performing minimization step: 2364. Total energy = 895.1351 kcal/mol (892.2270 without restraints) Performing minimization step: 2365. Total energy = 895.0950 kcal/mol (892.1885 without restraints) Performing minimization step: 2366. Total energy = 895.0547 kcal/mol (892.1498 without restraints) Performing minimization step: 2367. Total energy = 895.0147 kcal/mol (892.1113 without restraints) Performing minimization step: 2368. Total energy = 894.9746 kcal/mol (892.0729 without restraints) Performing minimization step: 2369. Total energy = 894.9346 kcal/mol (892.0345 without restraints) Performing minimization step: 2370. Total energy = 894.8946 kcal/mol (891.9962 without restraints) Performing minimization step: 2371. Total energy = 894.8547 kcal/mol (891.9577 without restraints) Performing minimization step: 2372. Total energy = 894.8150 kcal/mol (891.9197 without restraints) Performing minimization step: 2373. Total energy = 894.7748 kcal/mol (891.8811 without restraints) Performing minimization step: 2374. Total energy = 894.7345 kcal/mol (891.8424 without restraints) Performing minimization step: 2375. Total energy = 894.6937 kcal/mol (891.8031 without restraints) Performing minimization step: 2376. Total energy = 894.6538 kcal/mol (891.7648 without restraints) Performing minimization step: 2377. Total energy = 894.6136 kcal/mol (891.7261 without restraints) Performing minimization step: 2378. Total energy = 894.5737 kcal/mol (891.6878 without restraints) Performing minimization step: 2379. Total energy = 894.5335 kcal/mol (891.6493 without restraints) Performing minimization step: 2380. Total energy = 894.4935 kcal/mol (891.6107 without restraints) Performing minimization step: 2381. Total energy = 894.4532 kcal/mol (891.5720 without restraints) Performing minimization step: 2382. Total energy = 894.4130 kcal/mol (891.5335 without restraints) Performing minimization step: 2383. Total energy = 894.3731 kcal/mol (891.4951 without restraints) Performing minimization step: 2384. Total energy = 894.3329 kcal/mol (891.4563 without restraints) Performing minimization step: 2385. Total energy = 894.2926 kcal/mol (891.4175 without restraints) Performing minimization step: 2386. Total energy = 894.2522 kcal/mol (891.3787 without restraints) Performing minimization step: 2387. Total energy = 894.2119 kcal/mol (891.3400 without restraints) Performing minimization step: 2388. Total energy = 894.1718 kcal/mol (891.3013 without restraints) Performing minimization step: 2389. Total energy = 894.1314 kcal/mol (891.2625 without restraints) Performing minimization step: 2390. Total energy = 894.0915 kcal/mol (891.2241 without restraints) Performing minimization step: 2391. Total energy = 894.0512 kcal/mol (891.1853 without restraints) Performing minimization step: 2392. Total energy = 894.0106 kcal/mol (891.1463 without restraints) Performing minimization step: 2393. Total energy = 893.9703 kcal/mol (891.1075 without restraints) Performing minimization step: 2394. Total energy = 893.9300 kcal/mol (891.0686 without restraints) Performing minimization step: 2395. Total energy = 893.8899 kcal/mol (891.0300 without restraints) Performing minimization step: 2396. Total energy = 893.8495 kcal/mol (890.9912 without restraints) Performing minimization step: 2397. Total energy = 893.8092 kcal/mol (890.9523 without restraints) Performing minimization step: 2398. Total energy = 893.7688 kcal/mol (890.9135 without restraints) Performing minimization step: 2399. Total energy = 893.7285 kcal/mol (890.8746 without restraints) Performing minimization step: 2400. Total energy = 893.6884 kcal/mol (890.8363 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 893.6489 kcal/mol (890.7980 without restraints) Performing minimization step: 2402. Total energy = 893.6086 kcal/mol (890.7592 without restraints) Performing minimization step: 2403. Total energy = 893.5682 kcal/mol (890.7203 without restraints) Performing minimization step: 2404. Total energy = 893.5279 kcal/mol (890.6814 without restraints) Performing minimization step: 2405. Total energy = 893.4876 kcal/mol (890.6425 without restraints) Performing minimization step: 2406. Total energy = 893.4472 kcal/mol (890.6037 without restraints) Performing minimization step: 2407. Total energy = 893.4069 kcal/mol (890.5648 without restraints) Performing minimization step: 2408. Total energy = 893.3665 kcal/mol (890.5258 without restraints) Performing minimization step: 2409. Total energy = 893.3262 kcal/mol (890.4870 without restraints) Performing minimization step: 2410. Total energy = 893.2858 kcal/mol (890.4482 without restraints) Performing minimization step: 2411. Total energy = 893.2455 kcal/mol (890.4092 without restraints) Performing minimization step: 2412. Total energy = 893.2052 kcal/mol (890.3703 without restraints) Performing minimization step: 2413. Total energy = 893.1650 kcal/mol (890.3315 without restraints) Performing minimization step: 2414. Total energy = 893.1246 kcal/mol (890.2925 without restraints) Performing minimization step: 2415. Total energy = 893.0844 kcal/mol (890.2538 without restraints) Performing minimization step: 2416. Total energy = 893.0445 kcal/mol (890.2154 without restraints) Performing minimization step: 2417. Total energy = 893.0041 kcal/mol (890.1764 without restraints) Performing minimization step: 2418. Total energy = 892.9640 kcal/mol (890.1376 without restraints) Performing minimization step: 2419. Total energy = 892.9236 kcal/mol (890.0987 without restraints) Performing minimization step: 2420. Total energy = 892.8832 kcal/mol (890.0597 without restraints) Performing minimization step: 2421. Total energy = 892.8430 kcal/mol (890.0209 without restraints) Performing minimization step: 2422. Total energy = 892.8026 kcal/mol (889.9819 without restraints) Performing minimization step: 2423. Total energy = 892.7624 kcal/mol (889.9431 without restraints) Performing minimization step: 2424. Total energy = 892.7222 kcal/mol (889.9044 without restraints) Performing minimization step: 2425. Total energy = 892.6819 kcal/mol (889.8655 without restraints) Performing minimization step: 2426. Total energy = 892.6416 kcal/mol (889.8264 without restraints) Performing minimization step: 2427. Total energy = 892.6013 kcal/mol (889.7876 without restraints) Performing minimization step: 2428. Total energy = 892.5609 kcal/mol (889.7485 without restraints) Performing minimization step: 2429. Total energy = 892.5204 kcal/mol (889.7094 without restraints) Performing minimization step: 2430. Total energy = 892.4801 kcal/mol (889.6706 without restraints) Performing minimization step: 2431. Total energy = 892.4397 kcal/mol (889.6315 without restraints) Performing minimization step: 2432. Total energy = 892.3995 kcal/mol (889.5926 without restraints) Performing minimization step: 2433. Total energy = 892.3592 kcal/mol (889.5537 without restraints) Performing minimization step: 2434. Total energy = 892.3191 kcal/mol (889.5149 without restraints) Performing minimization step: 2435. Total energy = 892.2786 kcal/mol (889.4758 without restraints) Performing minimization step: 2436. Total energy = 892.2383 kcal/mol (889.4369 without restraints) Performing minimization step: 2437. Total energy = 892.1979 kcal/mol (889.3977 without restraints) Performing minimization step: 2438. Total energy = 892.1575 kcal/mol (889.3588 without restraints) Performing minimization step: 2439. Total energy = 892.1172 kcal/mol (889.3199 without restraints) Performing minimization step: 2440. Total energy = 892.0768 kcal/mol (889.2808 without restraints) Performing minimization step: 2441. Total energy = 892.0364 kcal/mol (889.2417 without restraints) Performing minimization step: 2442. Total energy = 891.9959 kcal/mol (889.2025 without restraints) Performing minimization step: 2443. Total energy = 891.9558 kcal/mol (889.1637 without restraints) Performing minimization step: 2444. Total energy = 891.9152 kcal/mol (889.1245 without restraints) Performing minimization step: 2445. Total energy = 891.8748 kcal/mol (889.0854 without restraints) Performing minimization step: 2446. Total energy = 891.8343 kcal/mol (889.0462 without restraints) Performing minimization step: 2447. Total energy = 891.7937 kcal/mol (889.0070 without restraints) Performing minimization step: 2448. Total energy = 891.7533 kcal/mol (888.9679 without restraints) Performing minimization step: 2449. Total energy = 891.7134 kcal/mol (888.9293 without restraints) Performing minimization step: 2450. Total energy = 891.6729 kcal/mol (888.8901 without restraints) Performing minimization step: 2451. Total energy = 891.6323 kcal/mol (888.8509 without restraints) Performing minimization step: 2452. Total energy = 891.5918 kcal/mol (888.8116 without restraints) Performing minimization step: 2453. Total energy = 891.5513 kcal/mol (888.7725 without restraints) Performing minimization step: 2454. Total energy = 891.5109 kcal/mol (888.7333 without restraints) Performing minimization step: 2455. Total energy = 891.4703 kcal/mol (888.6940 without restraints) Performing minimization step: 2456. Total energy = 891.4301 kcal/mol (888.6552 without restraints) Performing minimization step: 2457. Total energy = 891.3897 kcal/mol (888.6160 without restraints) Performing minimization step: 2458. Total energy = 891.3491 kcal/mol (888.5767 without restraints) Performing minimization step: 2459. Total energy = 891.3085 kcal/mol (888.5374 without restraints) Performing minimization step: 2460. Total energy = 891.2682 kcal/mol (888.4983 without restraints) Performing minimization step: 2461. Total energy = 891.2276 kcal/mol (888.4590 without restraints) Performing minimization step: 2462. Total energy = 891.1870 kcal/mol (888.4197 without restraints) Performing minimization step: 2463. Total energy = 891.1464 kcal/mol (888.3803 without restraints) Performing minimization step: 2464. Total energy = 891.1056 kcal/mol (888.3408 without restraints) Performing minimization step: 2465. Total energy = 891.0650 kcal/mol (888.3014 without restraints) Performing minimization step: 2466. Total energy = 891.0243 kcal/mol (888.2620 without restraints) Performing minimization step: 2467. Total energy = 890.9839 kcal/mol (888.2229 without restraints) Performing minimization step: 2468. Total energy = 890.9433 kcal/mol (888.1835 without restraints) Performing minimization step: 2469. Total energy = 890.9025 kcal/mol (888.1439 without restraints) Performing minimization step: 2470. Total energy = 890.8620 kcal/mol (888.1047 without restraints) Performing minimization step: 2471. Total energy = 890.8213 kcal/mol (888.0653 without restraints) Performing minimization step: 2472. Total energy = 890.7807 kcal/mol (888.0259 without restraints) Performing minimization step: 2473. Total energy = 890.7402 kcal/mol (887.9868 without restraints) Performing minimization step: 2474. Total energy = 890.6997 kcal/mol (887.9474 without restraints) Performing minimization step: 2475. Total energy = 890.6591 kcal/mol (887.9080 without restraints) Performing minimization step: 2476. Total energy = 890.6184 kcal/mol (887.8685 without restraints) Performing minimization step: 2477. Total energy = 890.5780 kcal/mol (887.8295 without restraints) Performing minimization step: 2478. Total energy = 890.5374 kcal/mol (887.7900 without restraints) Performing minimization step: 2479. Total energy = 890.4969 kcal/mol (887.7507 without restraints) Performing minimization step: 2480. Total energy = 890.4562 kcal/mol (887.7112 without restraints) Performing minimization step: 2481. Total energy = 890.4155 kcal/mol (887.6718 without restraints) Performing minimization step: 2482. Total energy = 890.3748 kcal/mol (887.6323 without restraints) Performing minimization step: 2483. Total energy = 890.3342 kcal/mol (887.5928 without restraints) Performing minimization step: 2484. Total energy = 890.2932 kcal/mol (887.5531 without restraints) Performing minimization step: 2485. Total energy = 890.2525 kcal/mol (887.5136 without restraints) Performing minimization step: 2486. Total energy = 890.2118 kcal/mol (887.4740 without restraints) Performing minimization step: 2487. Total energy = 890.1716 kcal/mol (887.4351 without restraints) Performing minimization step: 2488. Total energy = 890.1309 kcal/mol (887.3956 without restraints) Performing minimization step: 2489. Total energy = 890.0902 kcal/mol (887.3560 without restraints) Performing minimization step: 2490. Total energy = 890.0494 kcal/mol (887.3164 without restraints) Performing minimization step: 2491. Total energy = 890.0086 kcal/mol (887.2769 without restraints) Performing minimization step: 2492. Total energy = 889.9679 kcal/mol (887.2373 without restraints) Performing minimization step: 2493. Total energy = 889.9271 kcal/mol (887.1977 without restraints) Performing minimization step: 2494. Total energy = 889.8863 kcal/mol (887.1581 without restraints) Performing minimization step: 2495. Total energy = 889.8456 kcal/mol (887.1185 without restraints) Performing minimization step: 2496. Total energy = 889.8050 kcal/mol (887.0791 without restraints) Performing minimization step: 2497. Total energy = 889.7643 kcal/mol (887.0395 without restraints) Performing minimization step: 2498. Total energy = 889.7237 kcal/mol (887.0001 without restraints) Performing minimization step: 2499. Total energy = 889.6829 kcal/mol (886.9605 without restraints) Performing minimization step: 2500. Total energy = 889.6421 kcal/mol (886.9208 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 889.6012 kcal/mol (886.8812 without restraints) Performing minimization step: 2502. Total energy = 889.5604 kcal/mol (886.8415 without restraints) Performing minimization step: 2503. Total energy = 889.5198 kcal/mol (886.8020 without restraints) Performing minimization step: 2504. Total energy = 889.4789 kcal/mol (886.7623 without restraints) Performing minimization step: 2505. Total energy = 889.4383 kcal/mol (886.7228 without restraints) Performing minimization step: 2506. Total energy = 889.3977 kcal/mol (886.6833 without restraints) Performing minimization step: 2507. Total energy = 889.3568 kcal/mol (886.6436 without restraints) Performing minimization step: 2508. Total energy = 889.3160 kcal/mol (886.6039 without restraints) Performing minimization step: 2509. Total energy = 889.2754 kcal/mol (886.5645 without restraints) Performing minimization step: 2510. Total energy = 889.2345 kcal/mol (886.5248 without restraints) Performing minimization step: 2511. Total energy = 889.1942 kcal/mol (886.4856 without restraints) Performing minimization step: 2512. Total energy = 889.1535 kcal/mol (886.4461 without restraints) Performing minimization step: 2513. Total energy = 889.1129 kcal/mol (886.4065 without restraints) Performing minimization step: 2514. Total energy = 889.0724 kcal/mol (886.3672 without restraints) Performing minimization step: 2515. Total energy = 889.0313 kcal/mol (886.3271 without restraints) Performing minimization step: 2516. Total energy = 888.9906 kcal/mol (886.2876 without restraints) Performing minimization step: 2517. Total energy = 888.9493 kcal/mol (886.2474 without restraints) Performing minimization step: 2518. Total energy = 888.9084 kcal/mol (886.2076 without restraints) Performing minimization step: 2519. Total energy = 888.8674 kcal/mol (886.1678 without restraints) Performing minimization step: 2520. Total energy = 888.8268 kcal/mol (886.1282 without restraints) Performing minimization step: 2521. Total energy = 888.7861 kcal/mol (886.0886 without restraints) Performing minimization step: 2522. Total energy = 888.7451 kcal/mol (886.0488 without restraints) Performing minimization step: 2523. Total energy = 888.7042 kcal/mol (886.0090 without restraints) Performing minimization step: 2524. Total energy = 888.6633 kcal/mol (885.9691 without restraints) Performing minimization step: 2525. Total energy = 888.6224 kcal/mol (885.9294 without restraints) Performing minimization step: 2526. Total energy = 888.5815 kcal/mol (885.8896 without restraints) Performing minimization step: 2527. Total energy = 888.5409 kcal/mol (885.8500 without restraints) Performing minimization step: 2528. Total energy = 888.5003 kcal/mol (885.8105 without restraints) Performing minimization step: 2529. Total energy = 888.4593 kcal/mol (885.7706 without restraints) Performing minimization step: 2530. Total energy = 888.4183 kcal/mol (885.7307 without restraints) Performing minimization step: 2531. Total energy = 888.3777 kcal/mol (885.6912 without restraints) Performing minimization step: 2532. Total energy = 888.3367 kcal/mol (885.6513 without restraints) Performing minimization step: 2533. Total energy = 888.2957 kcal/mol (885.6114 without restraints) Performing minimization step: 2534. Total energy = 888.2549 kcal/mol (885.5717 without restraints) Performing minimization step: 2535. Total energy = 888.2139 kcal/mol (885.5317 without restraints) Performing minimization step: 2536. Total energy = 888.1733 kcal/mol (885.4921 without restraints) Performing minimization step: 2537. Total energy = 888.1323 kcal/mol (885.4522 without restraints) Performing minimization step: 2538. Total energy = 888.0912 kcal/mol (885.4122 without restraints) Performing minimization step: 2539. Total energy = 888.0502 kcal/mol (885.3723 without restraints) Performing minimization step: 2540. Total energy = 888.0092 kcal/mol (885.3323 without restraints) Performing minimization step: 2541. Total energy = 887.9683 kcal/mol (885.2924 without restraints) Performing minimization step: 2542. Total energy = 887.9273 kcal/mol (885.2525 without restraints) Performing minimization step: 2543. Total energy = 887.8865 kcal/mol (885.2128 without restraints) Performing minimization step: 2544. Total energy = 887.8457 kcal/mol (885.1730 without restraints) Performing minimization step: 2545. Total energy = 887.8046 kcal/mol (885.1330 without restraints) Performing minimization step: 2546. Total energy = 887.7635 kcal/mol (885.0930 without restraints) Performing minimization step: 2547. Total energy = 887.7224 kcal/mol (885.0529 without restraints) Performing minimization step: 2548. Total energy = 887.6813 kcal/mol (885.0129 without restraints) Performing minimization step: 2549. Total energy = 887.6401 kcal/mol (884.9725 without restraints) Performing minimization step: 2550. Total energy = 887.5989 kcal/mol (884.9325 without restraints) Performing minimization step: 2551. Total energy = 887.5579 kcal/mol (884.8927 without restraints) Performing minimization step: 2552. Total energy = 887.5169 kcal/mol (884.8526 without restraints) Performing minimization step: 2553. Total energy = 887.4759 kcal/mol (884.8126 without restraints) Performing minimization step: 2554. Total energy = 887.4349 kcal/mol (884.7727 without restraints) Performing minimization step: 2555. Total energy = 887.3940 kcal/mol (884.7328 without restraints) Performing minimization step: 2556. Total energy = 887.3529 kcal/mol (884.6927 without restraints) Performing minimization step: 2557. Total energy = 887.3121 kcal/mol (884.6530 without restraints) Performing minimization step: 2558. Total energy = 887.2711 kcal/mol (884.6131 without restraints) Performing minimization step: 2559. Total energy = 887.2299 kcal/mol (884.5727 without restraints) Performing minimization step: 2560. Total energy = 887.1887 kcal/mol (884.5326 without restraints) Performing minimization step: 2561. Total energy = 887.1480 kcal/mol (884.4929 without restraints) Performing minimization step: 2562. Total energy = 887.1069 kcal/mol (884.4529 without restraints) Performing minimization step: 2563. Total energy = 887.0659 kcal/mol (884.4128 without restraints) Performing minimization step: 2564. Total energy = 887.0248 kcal/mol (884.3728 without restraints) Performing minimization step: 2565. Total energy = 886.9838 kcal/mol (884.3327 without restraints) Performing minimization step: 2566. Total energy = 886.9428 kcal/mol (884.2927 without restraints) Performing minimization step: 2567. Total energy = 886.9017 kcal/mol (884.2527 without restraints) Performing minimization step: 2568. Total energy = 886.8608 kcal/mol (884.2127 without restraints) Performing minimization step: 2569. Total energy = 886.8202 kcal/mol (884.1731 without restraints) Performing minimization step: 2570. Total energy = 886.7790 kcal/mol (884.1329 without restraints) Performing minimization step: 2571. Total energy = 886.7381 kcal/mol (884.0929 without restraints) Performing minimization step: 2572. Total energy = 886.6968 kcal/mol (884.0527 without restraints) Performing minimization step: 2573. Total energy = 886.6559 kcal/mol (884.0127 without restraints) Performing minimization step: 2574. Total energy = 886.6146 kcal/mol (883.9725 without restraints) Performing minimization step: 2575. Total energy = 886.5734 kcal/mol (883.9322 without restraints) Performing minimization step: 2576. Total energy = 886.5324 kcal/mol (883.8922 without restraints) Performing minimization step: 2577. Total energy = 886.4916 kcal/mol (883.8523 without restraints) Performing minimization step: 2578. Total energy = 886.4504 kcal/mol (883.8123 without restraints) Performing minimization step: 2579. Total energy = 886.4093 kcal/mol (883.7720 without restraints) Performing minimization step: 2580. Total energy = 886.3683 kcal/mol (883.7320 without restraints) Performing minimization step: 2581. Total energy = 886.3273 kcal/mol (883.6920 without restraints) Performing minimization step: 2582. Total energy = 886.2862 kcal/mol (883.6519 without restraints) Performing minimization step: 2583. Total energy = 886.2450 kcal/mol (883.6116 without restraints) Performing minimization step: 2584. Total energy = 886.2037 kcal/mol (883.5713 without restraints) Performing minimization step: 2585. Total energy = 886.1624 kcal/mol (883.5309 without restraints) Performing minimization step: 2586. Total energy = 886.1211 kcal/mol (883.4906 without restraints) Performing minimization step: 2587. Total energy = 886.0798 kcal/mol (883.4503 without restraints) Performing minimization step: 2588. Total energy = 886.0386 kcal/mol (883.4100 without restraints) Performing minimization step: 2589. Total energy = 885.9975 kcal/mol (883.3699 without restraints) Performing minimization step: 2590. Total energy = 885.9565 kcal/mol (883.3298 without restraints) Performing minimization step: 2591. Total energy = 885.9152 kcal/mol (883.2895 without restraints) Performing minimization step: 2592. Total energy = 885.8739 kcal/mol (883.2491 without restraints) Performing minimization step: 2593. Total energy = 885.8328 kcal/mol (883.2090 without restraints) Performing minimization step: 2594. Total energy = 885.7918 kcal/mol (883.1689 without restraints) Performing minimization step: 2595. Total energy = 885.7505 kcal/mol (883.1285 without restraints) Performing minimization step: 2596. Total energy = 885.7091 kcal/mol (883.0881 without restraints) Performing minimization step: 2597. Total energy = 885.6678 kcal/mol (883.0478 without restraints) Performing minimization step: 2598. Total energy = 885.6266 kcal/mol (883.0076 without restraints) Performing minimization step: 2599. Total energy = 885.5856 kcal/mol (882.9674 without restraints) Performing minimization step: 2600. Total energy = 885.5449 kcal/mol (882.9276 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 885.5035 kcal/mol (882.8872 without restraints) Performing minimization step: 2602. Total energy = 885.4622 kcal/mol (882.8468 without restraints) Performing minimization step: 2603. Total energy = 885.4208 kcal/mol (882.8063 without restraints) Performing minimization step: 2604. Total energy = 885.3795 kcal/mol (882.7659 without restraints) Performing minimization step: 2605. Total energy = 885.3381 kcal/mol (882.7255 without restraints) Performing minimization step: 2606. Total energy = 885.2970 kcal/mol (882.6853 without restraints) Performing minimization step: 2607. Total energy = 885.2556 kcal/mol (882.6448 without restraints) Performing minimization step: 2608. Total energy = 885.2144 kcal/mol (882.6046 without restraints) Performing minimization step: 2609. Total energy = 885.1731 kcal/mol (882.5641 without restraints) Performing minimization step: 2610. Total energy = 885.1317 kcal/mol (882.5237 without restraints) Performing minimization step: 2611. Total energy = 885.0903 kcal/mol (882.4832 without restraints) Performing minimization step: 2612. Total energy = 885.0489 kcal/mol (882.4427 without restraints) Performing minimization step: 2613. Total energy = 885.0075 kcal/mol (882.4022 without restraints) Performing minimization step: 2614. Total energy = 884.9661 kcal/mol (882.3617 without restraints) Performing minimization step: 2615. Total energy = 884.9247 kcal/mol (882.3213 without restraints) Performing minimization step: 2616. Total energy = 884.8833 kcal/mol (882.2808 without restraints) Performing minimization step: 2617. Total energy = 884.8419 kcal/mol (882.2402 without restraints) Performing minimization step: 2618. Total energy = 884.8005 kcal/mol (882.1997 without restraints) Performing minimization step: 2619. Total energy = 884.7591 kcal/mol (882.1592 without restraints) Performing minimization step: 2620. Total energy = 884.7181 kcal/mol (882.1191 without restraints) Performing minimization step: 2621. Total energy = 884.6767 kcal/mol (882.0786 without restraints) Performing minimization step: 2622. Total energy = 884.6352 kcal/mol (882.0380 without restraints) Performing minimization step: 2623. Total energy = 884.5938 kcal/mol (881.9975 without restraints) Performing minimization step: 2624. Total energy = 884.5524 kcal/mol (881.9570 without restraints) Performing minimization step: 2625. Total energy = 884.5109 kcal/mol (881.9164 without restraints) Performing minimization step: 2626. Total energy = 884.4695 kcal/mol (881.8759 without restraints) Performing minimization step: 2627. Total energy = 884.4280 kcal/mol (881.8353 without restraints) Performing minimization step: 2628. Total energy = 884.3866 kcal/mol (881.7947 without restraints) Performing minimization step: 2629. Total energy = 884.3455 kcal/mol (881.7546 without restraints) Performing minimization step: 2630. Total energy = 884.3041 kcal/mol (881.7140 without restraints) Performing minimization step: 2631. Total energy = 884.2628 kcal/mol (881.6736 without restraints) Performing minimization step: 2632. Total energy = 884.2211 kcal/mol (881.6328 without restraints) Performing minimization step: 2633. Total energy = 884.1797 kcal/mol (881.5922 without restraints) Performing minimization step: 2634. Total energy = 884.1382 kcal/mol (881.5516 without restraints) Performing minimization step: 2635. Total energy = 884.0967 kcal/mol (881.5110 without restraints) Performing minimization step: 2636. Total energy = 884.0553 kcal/mol (881.4704 without restraints) Performing minimization step: 2637. Total energy = 884.0138 kcal/mol (881.4298 without restraints) Performing minimization step: 2638. Total energy = 883.9726 kcal/mol (881.3895 without restraints) Performing minimization step: 2639. Total energy = 883.9311 kcal/mol (881.3488 without restraints) Performing minimization step: 2640. Total energy = 883.8896 kcal/mol (881.3082 without restraints) Performing minimization step: 2641. Total energy = 883.8481 kcal/mol (881.2676 without restraints) Performing minimization step: 2642. Total energy = 883.8067 kcal/mol (881.2270 without restraints) Performing minimization step: 2643. Total energy = 883.7654 kcal/mol (881.1866 without restraints) Performing minimization step: 2644. Total energy = 883.7241 kcal/mol (881.1462 without restraints) Performing minimization step: 2645. Total energy = 883.6826 kcal/mol (881.1055 without restraints) Performing minimization step: 2646. Total energy = 883.6412 kcal/mol (881.0649 without restraints) Performing minimization step: 2647. Total energy = 883.5997 kcal/mol (881.0243 without restraints) Performing minimization step: 2648. Total energy = 883.5583 kcal/mol (880.9838 without restraints) Performing minimization step: 2649. Total energy = 883.5168 kcal/mol (880.9431 without restraints) Performing minimization step: 2650. Total energy = 883.4753 kcal/mol (880.9025 without restraints) Performing minimization step: 2651. Total energy = 883.4338 kcal/mol (880.8618 without restraints) Performing minimization step: 2652. Total energy = 883.3923 kcal/mol (880.8212 without restraints) Performing minimization step: 2653. Total energy = 883.3506 kcal/mol (880.7803 without restraints) Performing minimization step: 2654. Total energy = 883.3091 kcal/mol (880.7396 without restraints) Performing minimization step: 2655. Total energy = 883.2679 kcal/mol (880.6991 without restraints) Performing minimization step: 2656. Total energy = 883.2262 kcal/mol (880.6584 without restraints) Performing minimization step: 2657. Total energy = 883.1847 kcal/mol (880.6177 without restraints) Performing minimization step: 2658. Total energy = 883.1431 kcal/mol (880.5770 without restraints) Performing minimization step: 2659. Total energy = 883.1016 kcal/mol (880.5363 without restraints) Performing minimization step: 2660. Total energy = 883.0600 kcal/mol (880.4956 without restraints) Performing minimization step: 2661. Total energy = 883.0189 kcal/mol (880.4554 without restraints) Performing minimization step: 2662. Total energy = 882.9776 kcal/mol (880.4149 without restraints) Performing minimization step: 2663. Total energy = 882.9363 kcal/mol (880.3743 without restraints) Performing minimization step: 2664. Total energy = 882.8949 kcal/mol (880.3337 without restraints) Performing minimization step: 2665. Total energy = 882.8533 kcal/mol (880.2930 without restraints) Performing minimization step: 2666. Total energy = 882.8119 kcal/mol (880.2523 without restraints) Performing minimization step: 2667. Total energy = 882.7704 kcal/mol (880.2118 without restraints) Performing minimization step: 2668. Total energy = 882.7292 kcal/mol (880.1713 without restraints) Performing minimization step: 2669. Total energy = 882.6877 kcal/mol (880.1307 without restraints) Performing minimization step: 2670. Total energy = 882.6462 kcal/mol (880.0900 without restraints) Performing minimization step: 2671. Total energy = 882.6047 kcal/mol (880.0492 without restraints) Performing minimization step: 2672. Total energy = 882.5634 kcal/mol (880.0089 without restraints) Performing minimization step: 2673. Total energy = 882.5219 kcal/mol (879.9681 without restraints) Performing minimization step: 2674. Total energy = 882.4803 kcal/mol (879.9274 without restraints) Performing minimization step: 2675. Total energy = 882.4388 kcal/mol (879.8866 without restraints) Performing minimization step: 2676. Total energy = 882.3974 kcal/mol (879.8461 without restraints) Performing minimization step: 2677. Total energy = 882.3557 kcal/mol (879.8051 without restraints) Performing minimization step: 2678. Total energy = 882.3143 kcal/mol (879.7645 without restraints) Performing minimization step: 2679. Total energy = 882.2727 kcal/mol (879.7237 without restraints) Performing minimization step: 2680. Total energy = 882.2309 kcal/mol (879.6827 without restraints) Performing minimization step: 2681. Total energy = 882.1893 kcal/mol (879.6419 without restraints) Performing minimization step: 2682. Total energy = 882.1478 kcal/mol (879.6012 without restraints) Performing minimization step: 2683. Total energy = 882.1062 kcal/mol (879.5604 without restraints) Performing minimization step: 2684. Total energy = 882.0646 kcal/mol (879.5196 without restraints) Performing minimization step: 2685. Total energy = 882.0230 kcal/mol (879.4788 without restraints) Performing minimization step: 2686. Total energy = 881.9821 kcal/mol (879.4388 without restraints) Performing minimization step: 2687. Total energy = 881.9405 kcal/mol (879.3978 without restraints) Performing minimization step: 2688. Total energy = 881.8989 kcal/mol (879.3572 without restraints) Performing minimization step: 2689. Total energy = 881.8575 kcal/mol (879.3166 without restraints) Performing minimization step: 2690. Total energy = 881.8160 kcal/mol (879.2758 without restraints) Performing minimization step: 2691. Total energy = 881.7746 kcal/mol (879.2352 without restraints) Performing minimization step: 2692. Total energy = 881.7330 kcal/mol (879.1944 without restraints) Performing minimization step: 2693. Total energy = 881.6915 kcal/mol (879.1537 without restraints) Performing minimization step: 2694. Total energy = 881.6502 kcal/mol (879.1132 without restraints) Performing minimization step: 2695. Total energy = 881.6089 kcal/mol (879.0727 without restraints) Performing minimization step: 2696. Total energy = 881.5674 kcal/mol (879.0319 without restraints) Performing minimization step: 2697. Total energy = 881.5258 kcal/mol (878.9911 without restraints) Performing minimization step: 2698. Total energy = 881.4843 kcal/mol (878.9503 without restraints) Performing minimization step: 2699. Total energy = 881.4427 kcal/mol (878.9095 without restraints) Performing minimization step: 2700. Total energy = 881.4011 kcal/mol (878.8687 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 881.3595 kcal/mol (878.8279 without restraints) Performing minimization step: 2702. Total energy = 881.3179 kcal/mol (878.7871 without restraints) Performing minimization step: 2703. Total energy = 881.2763 kcal/mol (878.7462 without restraints) Performing minimization step: 2704. Total energy = 881.2349 kcal/mol (878.7056 without restraints) Performing minimization step: 2705. Total energy = 881.1934 kcal/mol (878.6648 without restraints) Performing minimization step: 2706. Total energy = 881.1518 kcal/mol (878.6241 without restraints) Performing minimization step: 2707. Total energy = 881.1105 kcal/mol (878.5835 without restraints) Performing minimization step: 2708. Total energy = 881.0689 kcal/mol (878.5427 without restraints) Performing minimization step: 2709. Total energy = 881.0273 kcal/mol (878.5018 without restraints) Performing minimization step: 2710. Total energy = 880.9857 kcal/mol (878.4610 without restraints) Performing minimization step: 2711. Total energy = 880.9442 kcal/mol (878.4202 without restraints) Performing minimization step: 2712. Total energy = 880.9028 kcal/mol (878.3796 without restraints) Performing minimization step: 2713. Total energy = 880.8614 kcal/mol (878.3390 without restraints) Performing minimization step: 2714. Total energy = 880.8201 kcal/mol (878.2984 without restraints) Performing minimization step: 2715. Total energy = 880.7788 kcal/mol (878.2579 without restraints) Performing minimization step: 2716. Total energy = 880.7373 kcal/mol (878.2171 without restraints) Performing minimization step: 2717. Total energy = 880.6963 kcal/mol (878.1768 without restraints) Performing minimization step: 2718. Total energy = 880.6548 kcal/mol (878.1362 without restraints) Performing minimization step: 2719. Total energy = 880.6133 kcal/mol (878.0953 without restraints) Performing minimization step: 2720. Total energy = 880.5718 kcal/mol (878.0547 without restraints) Performing minimization step: 2721. Total energy = 880.5304 kcal/mol (878.0141 without restraints) Performing minimization step: 2722. Total energy = 880.4889 kcal/mol (877.9732 without restraints) Performing minimization step: 2723. Total energy = 880.4473 kcal/mol (877.9324 without restraints) Performing minimization step: 2724. Total energy = 880.4058 kcal/mol (877.8916 without restraints) Performing minimization step: 2725. Total energy = 880.3643 kcal/mol (877.8510 without restraints) Performing minimization step: 2726. Total energy = 880.3230 kcal/mol (877.8103 without restraints) Performing minimization step: 2727. Total energy = 880.2813 kcal/mol (877.7693 without restraints) Performing minimization step: 2728. Total energy = 880.2400 kcal/mol (877.7288 without restraints) Performing minimization step: 2729. Total energy = 880.1988 kcal/mol (877.6884 without restraints) Performing minimization step: 2730. Total energy = 880.1574 kcal/mol (877.6476 without restraints) Performing minimization step: 2731. Total energy = 880.1158 kcal/mol (877.6068 without restraints) Performing minimization step: 2732. Total energy = 880.0743 kcal/mol (877.5660 without restraints) Performing minimization step: 2733. Total energy = 880.0327 kcal/mol (877.5252 without restraints) Performing minimization step: 2734. Total energy = 879.9912 kcal/mol (877.4844 without restraints) Performing minimization step: 2735. Total energy = 879.9496 kcal/mol (877.4435 without restraints) Performing minimization step: 2736. Total energy = 879.9081 kcal/mol (877.4027 without restraints) Performing minimization step: 2737. Total energy = 879.8665 kcal/mol (877.3619 without restraints) Performing minimization step: 2738. Total energy = 879.8249 kcal/mol (877.3210 without restraints) Performing minimization step: 2739. Total energy = 879.7834 kcal/mol (877.2802 without restraints) Performing minimization step: 2740. Total energy = 879.7418 kcal/mol (877.2394 without restraints) Performing minimization step: 2741. Total energy = 879.7003 kcal/mol (877.1985 without restraints) Performing minimization step: 2742. Total energy = 879.6587 kcal/mol (877.1577 without restraints) Performing minimization step: 2743. Total energy = 879.6172 kcal/mol (877.1169 without restraints) Performing minimization step: 2744. Total energy = 879.5754 kcal/mol (877.0758 without restraints) Performing minimization step: 2745. Total energy = 879.5339 kcal/mol (877.0350 without restraints) Performing minimization step: 2746. Total energy = 879.4923 kcal/mol (876.9942 without restraints) Performing minimization step: 2747. Total energy = 879.4508 kcal/mol (876.9534 without restraints) Performing minimization step: 2748. Total energy = 879.4091 kcal/mol (876.9124 without restraints) Performing minimization step: 2749. Total energy = 879.3680 kcal/mol (876.8721 without restraints) Performing minimization step: 2750. Total energy = 879.3266 kcal/mol (876.8313 without restraints) Performing minimization step: 2751. Total energy = 879.2850 kcal/mol (876.7905 without restraints) Performing minimization step: 2752. Total energy = 879.2436 kcal/mol (876.7497 without restraints) Performing minimization step: 2753. Total energy = 879.2020 kcal/mol (876.7089 without restraints) Performing minimization step: 2754. Total energy = 879.1605 kcal/mol (876.6680 without restraints) Performing minimization step: 2755. Total energy = 879.1190 kcal/mol (876.6272 without restraints) Performing minimization step: 2756. Total energy = 879.0777 kcal/mol (876.5866 without restraints) Performing minimization step: 2757. Total energy = 879.0362 kcal/mol (876.5459 without restraints) Performing minimization step: 2758. Total energy = 878.9947 kcal/mol (876.5051 without restraints) Performing minimization step: 2759. Total energy = 878.9534 kcal/mol (876.4645 without restraints) Performing minimization step: 2760. Total energy = 878.9119 kcal/mol (876.4237 without restraints) Performing minimization step: 2761. Total energy = 878.8709 kcal/mol (876.3834 without restraints) Performing minimization step: 2762. Total energy = 878.8296 kcal/mol (876.3428 without restraints) Performing minimization step: 2763. Total energy = 878.7882 kcal/mol (876.3021 without restraints) Performing minimization step: 2764. Total energy = 878.7470 kcal/mol (876.2616 without restraints) Performing minimization step: 2765. Total energy = 878.7059 kcal/mol (876.2212 without restraints) Performing minimization step: 2766. Total energy = 878.6647 kcal/mol (876.1807 without restraints) Performing minimization step: 2767. Total energy = 878.6233 kcal/mol (876.1401 without restraints) Performing minimization step: 2768. Total energy = 878.5820 kcal/mol (876.0994 without restraints) Performing minimization step: 2769. Total energy = 878.5405 kcal/mol (876.0586 without restraints) Performing minimization step: 2770. Total energy = 878.4998 kcal/mol (876.0186 without restraints) Performing minimization step: 2771. Total energy = 878.4584 kcal/mol (875.9778 without restraints) Performing minimization step: 2772. Total energy = 878.4169 kcal/mol (875.9371 without restraints) Performing minimization step: 2773. Total energy = 878.3756 kcal/mol (875.8965 without restraints) Performing minimization step: 2774. Total energy = 878.3342 kcal/mol (875.8558 without restraints) Performing minimization step: 2775. Total energy = 878.2928 kcal/mol (875.8150 without restraints) Performing minimization step: 2776. Total energy = 878.2514 kcal/mol (875.7743 without restraints) Performing minimization step: 2777. Total energy = 878.2099 kcal/mol (875.7335 without restraints) Performing minimization step: 2778. Total energy = 878.1685 kcal/mol (875.6928 without restraints) Performing minimization step: 2779. Total energy = 878.1270 kcal/mol (875.6520 without restraints) Performing minimization step: 2780. Total energy = 878.0860 kcal/mol (875.6117 without restraints) Performing minimization step: 2781. Total energy = 878.0449 kcal/mol (875.5713 without restraints) Performing minimization step: 2782. Total energy = 878.0036 kcal/mol (875.5306 without restraints) Performing minimization step: 2783. Total energy = 877.9627 kcal/mol (875.4905 without restraints) Performing minimization step: 2784. Total energy = 877.9214 kcal/mol (875.4498 without restraints) Performing minimization step: 2785. Total energy = 877.8800 kcal/mol (875.4091 without restraints) Performing minimization step: 2786. Total energy = 877.8386 kcal/mol (875.3684 without restraints) Performing minimization step: 2787. Total energy = 877.7976 kcal/mol (875.3280 without restraints) Performing minimization step: 2788. Total energy = 877.7562 kcal/mol (875.2873 without restraints) Performing minimization step: 2789. Total energy = 877.7149 kcal/mol (875.2466 without restraints) Performing minimization step: 2790. Total energy = 877.6735 kcal/mol (875.2059 without restraints) Performing minimization step: 2791. Total energy = 877.6324 kcal/mol (875.1656 without restraints) Performing minimization step: 2792. Total energy = 877.5911 kcal/mol (875.1249 without restraints) Performing minimization step: 2793. Total energy = 877.5498 kcal/mol (875.0842 without restraints) Performing minimization step: 2794. Total energy = 877.5084 kcal/mol (875.0435 without restraints) Performing minimization step: 2795. Total energy = 877.4671 kcal/mol (875.0028 without restraints) Performing minimization step: 2796. Total energy = 877.4258 kcal/mol (874.9622 without restraints) Performing minimization step: 2797. Total energy = 877.3848 kcal/mol (874.9219 without restraints) Performing minimization step: 2798. Total energy = 877.3434 kcal/mol (874.8812 without restraints) Performing minimization step: 2799. Total energy = 877.3022 kcal/mol (874.8407 without restraints) Performing minimization step: 2800. Total energy = 877.2612 kcal/mol (874.8003 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 877.2199 kcal/mol (874.7597 without restraints) Performing minimization step: 2802. Total energy = 877.1788 kcal/mol (874.7192 without restraints) Performing minimization step: 2803. Total energy = 877.1375 kcal/mol (874.6786 without restraints) Performing minimization step: 2804. Total energy = 877.0962 kcal/mol (874.6379 without restraints) Performing minimization step: 2805. Total energy = 877.0550 kcal/mol (874.5974 without restraints) Performing minimization step: 2806. Total energy = 877.0137 kcal/mol (874.5567 without restraints) Performing minimization step: 2807. Total energy = 876.9724 kcal/mol (874.5161 without restraints) Performing minimization step: 2808. Total energy = 876.9313 kcal/mol (874.4757 without restraints) Performing minimization step: 2809. Total energy = 876.8903 kcal/mol (874.4353 without restraints) Performing minimization step: 2810. Total energy = 876.8493 kcal/mol (874.3949 without restraints) Performing minimization step: 2811. Total energy = 876.8080 kcal/mol (874.3543 without restraints) Performing minimization step: 2812. Total energy = 876.7668 kcal/mol (874.3137 without restraints) Performing minimization step: 2813. Total energy = 876.7255 kcal/mol (874.2731 without restraints) Performing minimization step: 2814. Total energy = 876.6843 kcal/mol (874.2325 without restraints) Performing minimization step: 2815. Total energy = 876.6431 kcal/mol (874.1920 without restraints) Performing minimization step: 2816. Total energy = 876.6022 kcal/mol (874.1518 without restraints) Performing minimization step: 2817. Total energy = 876.5611 kcal/mol (874.1113 without restraints) Performing minimization step: 2818. Total energy = 876.5199 kcal/mol (874.0708 without restraints) Performing minimization step: 2819. Total energy = 876.4787 kcal/mol (874.0302 without restraints) Performing minimization step: 2820. Total energy = 876.4377 kcal/mol (873.9898 without restraints) Performing minimization step: 2821. Total energy = 876.3965 kcal/mol (873.9493 without restraints) Performing minimization step: 2822. Total energy = 876.3554 kcal/mol (873.9087 without restraints) Performing minimization step: 2823. Total energy = 876.3139 kcal/mol (873.8680 without restraints) Performing minimization step: 2824. Total energy = 876.2727 kcal/mol (873.8274 without restraints) Performing minimization step: 2825. Total energy = 876.2316 kcal/mol (873.7869 without restraints) Performing minimization step: 2826. Total energy = 876.1904 kcal/mol (873.7464 without restraints) Performing minimization step: 2827. Total energy = 876.1492 kcal/mol (873.7059 without restraints) Performing minimization step: 2828. Total energy = 876.1081 kcal/mol (873.6654 without restraints) Performing minimization step: 2829. Total energy = 876.0672 kcal/mol (873.6251 without restraints) Performing minimization step: 2830. Total energy = 876.0261 kcal/mol (873.5846 without restraints) Performing minimization step: 2831. Total energy = 875.9849 kcal/mol (873.5441 without restraints) Performing minimization step: 2832. Total energy = 875.9440 kcal/mol (873.5038 without restraints) Performing minimization step: 2833. Total energy = 875.9031 kcal/mol (873.4635 without restraints) Performing minimization step: 2834. Total energy = 875.8620 kcal/mol (873.4230 without restraints) Performing minimization step: 2835. Total energy = 875.8212 kcal/mol (873.3830 without restraints) Performing minimization step: 2836. Total energy = 875.7802 kcal/mol (873.3425 without restraints) Performing minimization step: 2837. Total energy = 875.7394 kcal/mol (873.3025 without restraints) Performing minimization step: 2838. Total energy = 875.6987 kcal/mol (873.2623 without restraints) Performing minimization step: 2839. Total energy = 875.6578 kcal/mol (873.2220 without restraints) Performing minimization step: 2840. Total energy = 875.6168 kcal/mol (873.1816 without restraints) Performing minimization step: 2841. Total energy = 875.5758 kcal/mol (873.1412 without restraints) Performing minimization step: 2842. Total energy = 875.5351 kcal/mol (873.1013 without restraints) Performing minimization step: 2843. Total energy = 875.4942 kcal/mol (873.0609 without restraints) Performing minimization step: 2844. Total energy = 875.4532 kcal/mol (873.0206 without restraints) Performing minimization step: 2845. Total energy = 875.4122 kcal/mol (872.9802 without restraints) Performing minimization step: 2846. Total energy = 875.3714 kcal/mol (872.9400 without restraints) Performing minimization step: 2847. Total energy = 875.3304 kcal/mol (872.8996 without restraints) Performing minimization step: 2848. Total energy = 875.2895 kcal/mol (872.8593 without restraints) Performing minimization step: 2849. Total energy = 875.2486 kcal/mol (872.8191 without restraints) Performing minimization step: 2850. Total energy = 875.2075 kcal/mol (872.7786 without restraints) Performing minimization step: 2851. Total energy = 875.1666 kcal/mol (872.7382 without restraints) Performing minimization step: 2852. Total energy = 875.1256 kcal/mol (872.6979 without restraints) Performing minimization step: 2853. Total energy = 875.0849 kcal/mol (872.6578 without restraints) Performing minimization step: 2854. Total energy = 875.0440 kcal/mol (872.6175 without restraints) Performing minimization step: 2855. Total energy = 875.0031 kcal/mol (872.5772 without restraints) Performing minimization step: 2856. Total energy = 874.9622 kcal/mol (872.5369 without restraints) Performing minimization step: 2857. Total energy = 874.9217 kcal/mol (872.4970 without restraints) Performing minimization step: 2858. Total energy = 874.8806 kcal/mol (872.4566 without restraints) Performing minimization step: 2859. Total energy = 874.8395 kcal/mol (872.4161 without restraints) Performing minimization step: 2860. Total energy = 874.7990 kcal/mol (872.3762 without restraints) Performing minimization step: 2861. Total energy = 874.7583 kcal/mol (872.3361 without restraints) Performing minimization step: 2862. Total energy = 874.7177 kcal/mol (872.2961 without restraints) Performing minimization step: 2863. Total energy = 874.6768 kcal/mol (872.2558 without restraints) Performing minimization step: 2864. Total energy = 874.6360 kcal/mol (872.2156 without restraints) Performing minimization step: 2865. Total energy = 874.5951 kcal/mol (872.1754 without restraints) Performing minimization step: 2866. Total energy = 874.5543 kcal/mol (872.1352 without restraints) Performing minimization step: 2867. Total energy = 874.5136 kcal/mol (872.0950 without restraints) Performing minimization step: 2868. Total energy = 874.4732 kcal/mol (872.0553 without restraints) Performing minimization step: 2869. Total energy = 874.4326 kcal/mol (872.0153 without restraints) Performing minimization step: 2870. Total energy = 874.3920 kcal/mol (871.9753 without restraints) Performing minimization step: 2871. Total energy = 874.3513 kcal/mol (871.9351 without restraints) Performing minimization step: 2872. Total energy = 874.3105 kcal/mol (871.8950 without restraints) Performing minimization step: 2873. Total energy = 874.2697 kcal/mol (871.8547 without restraints) Performing minimization step: 2874. Total energy = 874.2289 kcal/mol (871.8146 without restraints) Performing minimization step: 2875. Total energy = 874.1884 kcal/mol (871.7746 without restraints) Performing minimization step: 2876. Total energy = 874.1476 kcal/mol (871.7345 without restraints) Performing minimization step: 2877. Total energy = 874.1069 kcal/mol (871.6944 without restraints) Performing minimization step: 2878. Total energy = 874.0664 kcal/mol (871.6545 without restraints) Performing minimization step: 2879. Total energy = 874.0260 kcal/mol (871.6147 without restraints) Performing minimization step: 2880. Total energy = 873.9853 kcal/mol (871.5746 without restraints) Performing minimization step: 2881. Total energy = 873.9447 kcal/mol (871.5345 without restraints) Performing minimization step: 2882. Total energy = 873.9040 kcal/mol (871.4945 without restraints) Performing minimization step: 2883. Total energy = 873.8634 kcal/mol (871.4544 without restraints) Performing minimization step: 2884. Total energy = 873.8227 kcal/mol (871.4144 without restraints) Performing minimization step: 2885. Total energy = 873.7823 kcal/mol (871.3745 without restraints) Performing minimization step: 2886. Total energy = 873.7417 kcal/mol (871.3345 without restraints) Performing minimization step: 2887. Total energy = 873.7011 kcal/mol (871.2946 without restraints) Performing minimization step: 2888. Total energy = 873.6606 kcal/mol (871.2546 without restraints) Performing minimization step: 2889. Total energy = 873.6202 kcal/mol (871.2148 without restraints) Performing minimization step: 2890. Total energy = 873.5796 kcal/mol (871.1748 without restraints) Performing minimization step: 2891. Total energy = 873.5391 kcal/mol (871.1348 without restraints) Performing minimization step: 2892. Total energy = 873.4986 kcal/mol (871.0951 without restraints) Performing minimization step: 2893. Total energy = 873.4584 kcal/mol (871.0554 without restraints) Performing minimization step: 2894. Total energy = 873.4179 kcal/mol (871.0154 without restraints) Performing minimization step: 2895. Total energy = 873.3777 kcal/mol (870.9758 without restraints) Performing minimization step: 2896. Total energy = 873.3376 kcal/mol (870.9364 without restraints) Performing minimization step: 2897. Total energy = 873.2972 kcal/mol (870.8965 without restraints) Performing minimization step: 2898. Total energy = 873.2568 kcal/mol (870.8566 without restraints) Performing minimization step: 2899. Total energy = 873.2163 kcal/mol (870.8167 without restraints) Performing minimization step: 2900. Total energy = 873.1762 kcal/mol (870.7773 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 873.1359 kcal/mol (870.7375 without restraints) Performing minimization step: 2902. Total energy = 873.0956 kcal/mol (870.6978 without restraints) Performing minimization step: 2903. Total energy = 873.0554 kcal/mol (870.6582 without restraints) Performing minimization step: 2904. Total energy = 873.0150 kcal/mol (870.6184 without restraints) Performing minimization step: 2905. Total energy = 872.9750 kcal/mol (870.5789 without restraints) Performing minimization step: 2906. Total energy = 872.9347 kcal/mol (870.5393 without restraints) Performing minimization step: 2907. Total energy = 872.8945 kcal/mol (870.4995 without restraints) Performing minimization step: 2908. Total energy = 872.8543 kcal/mol (870.4599 without restraints) Performing minimization step: 2909. Total energy = 872.8139 kcal/mol (870.4201 without restraints) Performing minimization step: 2910. Total energy = 872.7737 kcal/mol (870.3805 without restraints) Performing minimization step: 2911. Total energy = 872.7332 kcal/mol (870.3406 without restraints) Performing minimization step: 2912. Total energy = 872.6931 kcal/mol (870.3010 without restraints) Performing minimization step: 2913. Total energy = 872.6527 kcal/mol (870.2612 without restraints) Performing minimization step: 2914. Total energy = 872.6124 kcal/mol (870.2215 without restraints) Performing minimization step: 2915. Total energy = 872.5723 kcal/mol (870.1819 without restraints) Performing minimization step: 2916. Total energy = 872.5320 kcal/mol (870.1422 without restraints) Performing minimization step: 2917. Total energy = 872.4917 kcal/mol (870.1025 without restraints) Performing minimization step: 2918. Total energy = 872.4517 kcal/mol (870.0630 without restraints) Performing minimization step: 2919. Total energy = 872.4114 kcal/mol (870.0233 without restraints) Performing minimization step: 2920. Total energy = 872.3712 kcal/mol (869.9836 without restraints) Performing minimization step: 2921. Total energy = 872.3307 kcal/mol (869.9438 without restraints) Performing minimization step: 2922. Total energy = 872.2903 kcal/mol (869.9039 without restraints) Performing minimization step: 2923. Total energy = 872.2501 kcal/mol (869.8643 without restraints) Performing minimization step: 2924. Total energy = 872.2099 kcal/mol (869.8246 without restraints) Performing minimization step: 2925. Total energy = 872.1697 kcal/mol (869.7850 without restraints) Performing minimization step: 2926. Total energy = 872.1296 kcal/mol (869.7455 without restraints) Performing minimization step: 2927. Total energy = 872.0894 kcal/mol (869.7059 without restraints) Performing minimization step: 2928. Total energy = 872.0497 kcal/mol (869.6667 without restraints) Performing minimization step: 2929. Total energy = 872.0096 kcal/mol (869.6273 without restraints) Performing minimization step: 2930. Total energy = 871.9696 kcal/mol (869.5877 without restraints) Performing minimization step: 2931. Total energy = 871.9296 kcal/mol (869.5483 without restraints) Performing minimization step: 2932. Total energy = 871.8895 kcal/mol (869.5088 without restraints) Performing minimization step: 2933. Total energy = 871.8495 kcal/mol (869.4693 without restraints) Performing minimization step: 2934. Total energy = 871.8095 kcal/mol (869.4298 without restraints) Performing minimization step: 2935. Total energy = 871.7693 kcal/mol (869.3901 without restraints) Performing minimization step: 2936. Total energy = 871.7291 kcal/mol (869.3506 without restraints) Performing minimization step: 2937. Total energy = 871.6891 kcal/mol (869.3111 without restraints) Performing minimization step: 2938. Total energy = 871.6491 kcal/mol (869.2717 without restraints) Performing minimization step: 2939. Total energy = 871.6091 kcal/mol (869.2322 without restraints) Performing minimization step: 2940. Total energy = 871.5691 kcal/mol (869.1928 without restraints) Performing minimization step: 2941. Total energy = 871.5291 kcal/mol (869.1534 without restraints) Performing minimization step: 2942. Total energy = 871.4891 kcal/mol (869.1139 without restraints) Performing minimization step: 2943. Total energy = 871.4492 kcal/mol (869.0745 without restraints) Performing minimization step: 2944. Total energy = 871.4091 kcal/mol (869.0350 without restraints) Performing minimization step: 2945. Total energy = 871.3692 kcal/mol (868.9956 without restraints) Performing minimization step: 2946. Total energy = 871.3293 kcal/mol (868.9563 without restraints) Performing minimization step: 2947. Total energy = 871.2895 kcal/mol (868.9170 without restraints) Performing minimization step: 2948. Total energy = 871.2496 kcal/mol (868.8777 without restraints) Performing minimization step: 2949. Total energy = 871.2099 kcal/mol (868.8385 without restraints) Performing minimization step: 2950. Total energy = 871.1697 kcal/mol (868.7988 without restraints) Performing minimization step: 2951. Total energy = 871.1298 kcal/mol (868.7595 without restraints) Performing minimization step: 2952. Total energy = 871.0899 kcal/mol (868.7202 without restraints) Performing minimization step: 2953. Total energy = 871.0501 kcal/mol (868.6809 without restraints) Performing minimization step: 2954. Total energy = 871.0105 kcal/mol (868.6419 without restraints) Performing minimization step: 2955. Total energy = 870.9709 kcal/mol (868.6028 without restraints) Performing minimization step: 2956. Total energy = 870.9311 kcal/mol (868.5636 without restraints) Performing minimization step: 2957. Total energy = 870.8913 kcal/mol (868.5243 without restraints) Performing minimization step: 2958. Total energy = 870.8518 kcal/mol (868.4853 without restraints) Performing minimization step: 2959. Total energy = 870.8120 kcal/mol (868.4461 without restraints) Performing minimization step: 2960. Total energy = 870.7723 kcal/mol (868.4069 without restraints) Performing minimization step: 2961. Total energy = 870.7325 kcal/mol (868.3677 without restraints) Performing minimization step: 2962. Total energy = 870.6929 kcal/mol (868.3286 without restraints) Performing minimization step: 2963. Total energy = 870.6532 kcal/mol (868.2895 without restraints) Performing minimization step: 2964. Total energy = 870.6135 kcal/mol (868.2503 without restraints) Performing minimization step: 2965. Total energy = 870.5739 kcal/mol (868.2112 without restraints) Performing minimization step: 2966. Total energy = 870.5343 kcal/mol (868.1723 without restraints) Performing minimization step: 2967. Total energy = 870.4948 kcal/mol (868.1332 without restraints) Performing minimization step: 2968. Total energy = 870.4551 kcal/mol (868.0941 without restraints) Performing minimization step: 2969. Total energy = 870.4158 kcal/mol (868.0552 without restraints) Performing minimization step: 2970. Total energy = 870.3761 kcal/mol (868.0161 without restraints) Performing minimization step: 2971. Total energy = 870.3365 kcal/mol (867.9771 without restraints) Performing minimization step: 2972. Total energy = 870.2970 kcal/mol (867.9380 without restraints) Performing minimization step: 2973. Total energy = 870.2575 kcal/mol (867.8992 without restraints) Performing minimization step: 2974. Total energy = 870.2183 kcal/mol (867.8604 without restraints) Performing minimization step: 2975. Total energy = 870.1790 kcal/mol (867.8216 without restraints) Performing minimization step: 2976. Total energy = 870.1394 kcal/mol (867.7826 without restraints) Performing minimization step: 2977. Total energy = 870.0999 kcal/mol (867.7436 without restraints) Performing minimization step: 2978. Total energy = 870.0606 kcal/mol (867.7049 without restraints) Performing minimization step: 2979. Total energy = 870.0213 kcal/mol (867.6662 without restraints) Performing minimization step: 2980. Total energy = 869.9820 kcal/mol (867.6274 without restraints) Performing minimization step: 2981. Total energy = 869.9429 kcal/mol (867.5887 without restraints) Performing minimization step: 2982. Total energy = 869.9036 kcal/mol (867.5500 without restraints) Performing minimization step: 2983. Total energy = 869.8642 kcal/mol (867.5111 without restraints) Performing minimization step: 2984. Total energy = 869.8248 kcal/mol (867.4722 without restraints) Performing minimization step: 2985. Total energy = 869.7854 kcal/mol (867.4333 without restraints) Performing minimization step: 2986. Total energy = 869.7460 kcal/mol (867.3944 without restraints) Performing minimization step: 2987. Total energy = 869.7066 kcal/mol (867.3556 without restraints) Performing minimization step: 2988. Total energy = 869.6673 kcal/mol (867.3168 without restraints) Performing minimization step: 2989. Total energy = 869.6279 kcal/mol (867.2780 without restraints) Performing minimization step: 2990. Total energy = 869.5888 kcal/mol (867.2394 without restraints) Performing minimization step: 2991. Total energy = 869.5495 kcal/mol (867.2006 without restraints) Performing minimization step: 2992. Total energy = 869.5102 kcal/mol (867.1618 without restraints) Performing minimization step: 2993. Total energy = 869.4709 kcal/mol (867.1230 without restraints) Performing minimization step: 2994. Total energy = 869.4316 kcal/mol (867.0842 without restraints) Performing minimization step: 2995. Total energy = 869.3923 kcal/mol (867.0455 without restraints) Performing minimization step: 2996. Total energy = 869.3532 kcal/mol (867.0069 without restraints) Performing minimization step: 2997. Total energy = 869.3143 kcal/mol (866.9684 without restraints) Performing minimization step: 2998. Total energy = 869.2750 kcal/mol (866.9297 without restraints) Performing minimization step: 2999. Total energy = 869.2358 kcal/mol (866.8910 without restraints) Performing minimization step: 3000. Total energy = 869.1964 kcal/mol (866.8521 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 869.1570 kcal/mol (866.8132 without restraints) Performing minimization step: 3002. Total energy = 869.1178 kcal/mol (866.7746 without restraints) Performing minimization step: 3003. Total energy = 869.0787 kcal/mol (866.7360 without restraints) Performing minimization step: 3004. Total energy = 869.0396 kcal/mol (866.6975 without restraints) Performing minimization step: 3005. Total energy = 869.0006 kcal/mol (866.6589 without restraints) Performing minimization step: 3006. Total energy = 868.9618 kcal/mol (866.6206 without restraints) Performing minimization step: 3007. Total energy = 868.9227 kcal/mol (866.5820 without restraints) Performing minimization step: 3008. Total energy = 868.8836 kcal/mol (866.5434 without restraints) Performing minimization step: 3009. Total energy = 868.8445 kcal/mol (866.5049 without restraints) Performing minimization step: 3010. Total energy = 868.8057 kcal/mol (866.4665 without restraints) Performing minimization step: 3011. Total energy = 868.7666 kcal/mol (866.4280 without restraints) Performing minimization step: 3012. Total energy = 868.7276 kcal/mol (866.3895 without restraints) Performing minimization step: 3013. Total energy = 868.6888 kcal/mol (866.3512 without restraints) Performing minimization step: 3014. Total energy = 868.6498 kcal/mol (866.3128 without restraints) Performing minimization step: 3015. Total energy = 868.6110 kcal/mol (866.2745 without restraints) Performing minimization step: 3016. Total energy = 868.5724 kcal/mol (866.2364 without restraints) Performing minimization step: 3017. Total energy = 868.5336 kcal/mol (866.1980 without restraints) Performing minimization step: 3018. Total energy = 868.4947 kcal/mol (866.1596 without restraints) Performing minimization step: 3019. Total energy = 868.4560 kcal/mol (866.1214 without restraints) Performing minimization step: 3020. Total energy = 868.4171 kcal/mol (866.0830 without restraints) Performing minimization step: 3021. Total energy = 868.3782 kcal/mol (866.0447 without restraints) Performing minimization step: 3022. Total energy = 868.3393 kcal/mol (866.0063 without restraints) Performing minimization step: 3023. Total energy = 868.3005 kcal/mol (865.9680 without restraints) Performing minimization step: 3024. Total energy = 868.2619 kcal/mol (865.9298 without restraints) Performing minimization step: 3025. Total energy = 868.2230 kcal/mol (865.8915 without restraints) Performing minimization step: 3026. Total energy = 868.1842 kcal/mol (865.8532 without restraints) Performing minimization step: 3027. Total energy = 868.1454 kcal/mol (865.8149 without restraints) Performing minimization step: 3028. Total energy = 868.1065 kcal/mol (865.7764 without restraints) Performing minimization step: 3029. Total energy = 868.0677 kcal/mol (865.7382 without restraints) Performing minimization step: 3030. Total energy = 868.0290 kcal/mol (865.6999 without restraints) Performing minimization step: 3031. Total energy = 867.9902 kcal/mol (865.6617 without restraints) Performing minimization step: 3032. Total energy = 867.9515 kcal/mol (865.6235 without restraints) Performing minimization step: 3033. Total energy = 867.9130 kcal/mol (865.5855 without restraints) Performing minimization step: 3034. Total energy = 867.8743 kcal/mol (865.5473 without restraints) Performing minimization step: 3035. Total energy = 867.8357 kcal/mol (865.5091 without restraints) Performing minimization step: 3036. Total energy = 867.7970 kcal/mol (865.4710 without restraints) Performing minimization step: 3037. Total energy = 867.7584 kcal/mol (865.4328 without restraints) Performing minimization step: 3038. Total energy = 867.7198 kcal/mol (865.3947 without restraints) Performing minimization step: 3039. Total energy = 867.6812 kcal/mol (865.3566 without restraints) Performing minimization step: 3040. Total energy = 867.6426 kcal/mol (865.3185 without restraints) Performing minimization step: 3041. Total energy = 867.6040 kcal/mol (865.2804 without restraints) Performing minimization step: 3042. Total energy = 867.5655 kcal/mol (865.2424 without restraints) Performing minimization step: 3043. Total energy = 867.5269 kcal/mol (865.2043 without restraints) Performing minimization step: 3044. Total energy = 867.4884 kcal/mol (865.1663 without restraints) Performing minimization step: 3045. Total energy = 867.4501 kcal/mol (865.1285 without restraints) Performing minimization step: 3046. Total energy = 867.4117 kcal/mol (865.0906 without restraints) Performing minimization step: 3047. Total energy = 867.3732 kcal/mol (865.0526 without restraints) Performing minimization step: 3048. Total energy = 867.3348 kcal/mol (865.0146 without restraints) Performing minimization step: 3049. Total energy = 867.2962 kcal/mol (864.9764 without restraints) Performing minimization step: 3050. Total energy = 867.2576 kcal/mol (864.9385 without restraints) Performing minimization step: 3051. Total energy = 867.2192 kcal/mol (864.9005 without restraints) Performing minimization step: 3052. Total energy = 867.1810 kcal/mol (864.8628 without restraints) Performing minimization step: 3053. Total energy = 867.1427 kcal/mol (864.8250 without restraints) Performing minimization step: 3054. Total energy = 867.1044 kcal/mol (864.7873 without restraints) Performing minimization step: 3055. Total energy = 867.0662 kcal/mol (864.7496 without restraints) Performing minimization step: 3056. Total energy = 867.0280 kcal/mol (864.7117 without restraints) Performing minimization step: 3057. Total energy = 866.9899 kcal/mol (864.6743 without restraints) Performing minimization step: 3058. Total energy = 866.9519 kcal/mol (864.6366 without restraints) Performing minimization step: 3059. Total energy = 866.9136 kcal/mol (864.5988 without restraints) Performing minimization step: 3060. Total energy = 866.8754 kcal/mol (864.5611 without restraints) Performing minimization step: 3061. Total energy = 866.8371 kcal/mol (864.5233 without restraints) Performing minimization step: 3062. Total energy = 866.7993 kcal/mol (864.4860 without restraints) Performing minimization step: 3063. Total energy = 866.7611 kcal/mol (864.4482 without restraints) Performing minimization step: 3064. Total energy = 866.7228 kcal/mol (864.4105 without restraints) Performing minimization step: 3065. Total energy = 866.6846 kcal/mol (864.3727 without restraints) Performing minimization step: 3066. Total energy = 866.6465 kcal/mol (864.3350 without restraints) Performing minimization step: 3067. Total energy = 866.6085 kcal/mol (864.2975 without restraints) Performing minimization step: 3068. Total energy = 866.5703 kcal/mol (864.2599 without restraints) Performing minimization step: 3069. Total energy = 866.5322 kcal/mol (864.2222 without restraints) Performing minimization step: 3070. Total energy = 866.4939 kcal/mol (864.1844 without restraints) Performing minimization step: 3071. Total energy = 866.4558 kcal/mol (864.1468 without restraints) Performing minimization step: 3072. Total energy = 866.4177 kcal/mol (864.1092 without restraints) Performing minimization step: 3073. Total energy = 866.3799 kcal/mol (864.0718 without restraints) Performing minimization step: 3074. Total energy = 866.3418 kcal/mol (864.0342 without restraints) Performing minimization step: 3075. Total energy = 866.3038 kcal/mol (863.9967 without restraints) Performing minimization step: 3076. Total energy = 866.2658 kcal/mol (863.9592 without restraints) Performing minimization step: 3077. Total energy = 866.2278 kcal/mol (863.9217 without restraints) Performing minimization step: 3078. Total energy = 866.1899 kcal/mol (863.8842 without restraints) Performing minimization step: 3079. Total energy = 866.1519 kcal/mol (863.8467 without restraints) Performing minimization step: 3080. Total energy = 866.1140 kcal/mol (863.8092 without restraints) Performing minimization step: 3081. Total energy = 866.0760 kcal/mol (863.7717 without restraints) Performing minimization step: 3082. Total energy = 866.0381 kcal/mol (863.7343 without restraints) Performing minimization step: 3083. Total energy = 866.0008 kcal/mol (863.6976 without restraints) Performing minimization step: 3084. Total energy = 865.9631 kcal/mol (863.6602 without restraints) Performing minimization step: 3085. Total energy = 865.9252 kcal/mol (863.6228 without restraints) Performing minimization step: 3086. Total energy = 865.8873 kcal/mol (863.5854 without restraints) Performing minimization step: 3087. Total energy = 865.8495 kcal/mol (863.5480 without restraints) Performing minimization step: 3088. Total energy = 865.8117 kcal/mol (863.5107 without restraints) Performing minimization step: 3089. Total energy = 865.7739 kcal/mol (863.4734 without restraints) Performing minimization step: 3090. Total energy = 865.7361 kcal/mol (863.4360 without restraints) Performing minimization step: 3091. Total energy = 865.6985 kcal/mol (863.3991 without restraints) Performing minimization step: 3092. Total energy = 865.6612 kcal/mol (863.3621 without restraints) Performing minimization step: 3093. Total energy = 865.6235 kcal/mol (863.3248 without restraints) Performing minimization step: 3094. Total energy = 865.5859 kcal/mol (863.2878 without restraints) Performing minimization step: 3095. Total energy = 865.5483 kcal/mol (863.2505 without restraints) Performing minimization step: 3096. Total energy = 865.5107 kcal/mol (863.2135 without restraints) Performing minimization step: 3097. Total energy = 865.4731 kcal/mol (863.1763 without restraints) Performing minimization step: 3098. Total energy = 865.4355 kcal/mol (863.1391 without restraints) Performing minimization step: 3099. Total energy = 865.3979 kcal/mol (863.1020 without restraints) Performing minimization step: 3100. Total energy = 865.3603 kcal/mol (863.0648 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 865.3227 kcal/mol (863.0277 without restraints) Performing minimization step: 3102. Total energy = 865.2851 kcal/mol (862.9906 without restraints) Performing minimization step: 3103. Total energy = 865.2475 kcal/mol (862.9535 without restraints) Performing minimization step: 3104. Total energy = 865.2100 kcal/mol (862.9164 without restraints) Performing minimization step: 3105. Total energy = 865.1725 kcal/mol (862.8793 without restraints) Performing minimization step: 3106. Total energy = 865.1352 kcal/mol (862.8427 without restraints) Performing minimization step: 3107. Total energy = 865.0979 kcal/mol (862.8056 without restraints) Performing minimization step: 3108. Total energy = 865.0604 kcal/mol (862.7687 without restraints) Performing minimization step: 3109. Total energy = 865.0230 kcal/mol (862.7317 without restraints) Performing minimization step: 3110. Total energy = 864.9856 kcal/mol (862.6947 without restraints) Performing minimization step: 3111. Total energy = 864.9482 kcal/mol (862.6578 without restraints) Performing minimization step: 3112. Total energy = 864.9108 kcal/mol (862.6210 without restraints) Performing minimization step: 3113. Total energy = 864.8740 kcal/mol (862.5845 without restraints) Performing minimization step: 3114. Total energy = 864.8366 kcal/mol (862.5476 without restraints) Performing minimization step: 3115. Total energy = 864.7995 kcal/mol (862.5110 without restraints) Performing minimization step: 3116. Total energy = 864.7622 kcal/mol (862.4741 without restraints) Performing minimization step: 3117. Total energy = 864.7249 kcal/mol (862.4373 without restraints) Performing minimization step: 3118. Total energy = 864.6879 kcal/mol (862.4007 without restraints) Performing minimization step: 3119. Total energy = 864.6508 kcal/mol (862.3641 without restraints) Performing minimization step: 3120. Total energy = 864.6136 kcal/mol (862.3273 without restraints) Performing minimization step: 3121. Total energy = 864.5763 kcal/mol (862.2905 without restraints) Performing minimization step: 3122. Total energy = 864.5391 kcal/mol (862.2537 without restraints) Performing minimization step: 3123. Total energy = 864.5023 kcal/mol (862.2176 without restraints) Performing minimization step: 3124. Total energy = 864.4653 kcal/mol (862.1808 without restraints) Performing minimization step: 3125. Total energy = 864.4281 kcal/mol (862.1441 without restraints) Performing minimization step: 3126. Total energy = 864.3910 kcal/mol (862.1074 without restraints) Performing minimization step: 3127. Total energy = 864.3539 kcal/mol (862.0707 without restraints) Performing minimization step: 3128. Total energy = 864.3170 kcal/mol (862.0343 without restraints) Performing minimization step: 3129. Total energy = 864.2799 kcal/mol (861.9976 without restraints) Performing minimization step: 3130. Total energy = 864.2428 kcal/mol (861.9610 without restraints) Performing minimization step: 3131. Total energy = 864.2059 kcal/mol (861.9246 without restraints) Performing minimization step: 3132. Total energy = 864.1690 kcal/mol (861.8881 without restraints) Performing minimization step: 3133. Total energy = 864.1320 kcal/mol (861.8515 without restraints) Performing minimization step: 3134. Total energy = 864.0950 kcal/mol (861.8149 without restraints) Performing minimization step: 3135. Total energy = 864.0580 kcal/mol (861.7784 without restraints) Performing minimization step: 3136. Total energy = 864.0210 kcal/mol (861.7419 without restraints) Performing minimization step: 3137. Total energy = 863.9843 kcal/mol (861.7056 without restraints) Performing minimization step: 3138. Total energy = 863.9476 kcal/mol (861.6693 without restraints) Performing minimization step: 3139. Total energy = 863.9104 kcal/mol (861.6326 without restraints) Performing minimization step: 3140. Total energy = 863.8735 kcal/mol (861.5962 without restraints) Performing minimization step: 3141. Total energy = 863.8367 kcal/mol (861.5597 without restraints) Performing minimization step: 3142. Total energy = 863.7998 kcal/mol (861.5233 without restraints) Performing minimization step: 3143. Total energy = 863.7630 kcal/mol (861.4870 without restraints) Performing minimization step: 3144. Total energy = 863.7262 kcal/mol (861.4506 without restraints) Performing minimization step: 3145. Total energy = 863.6894 kcal/mol (861.4143 without restraints) Performing minimization step: 3146. Total energy = 863.6528 kcal/mol (861.3781 without restraints) Performing minimization step: 3147. Total energy = 863.6162 kcal/mol (861.3419 without restraints) Performing minimization step: 3148. Total energy = 863.5795 kcal/mol (861.3056 without restraints) Performing minimization step: 3149. Total energy = 863.5428 kcal/mol (861.2694 without restraints) Performing minimization step: 3150. Total energy = 863.5061 kcal/mol (861.2331 without restraints) Performing minimization step: 3151. Total energy = 863.4694 kcal/mol (861.1969 without restraints) Performing minimization step: 3152. Total energy = 863.4328 kcal/mol (861.1606 without restraints) Performing minimization step: 3153. Total energy = 863.3961 kcal/mol (861.1244 without restraints) Performing minimization step: 3154. Total energy = 863.3597 kcal/mol (861.0885 without restraints) Performing minimization step: 3155. Total energy = 863.3233 kcal/mol (861.0525 without restraints) Performing minimization step: 3156. Total energy = 863.2868 kcal/mol (861.0165 without restraints) Performing minimization step: 3157. Total energy = 863.2503 kcal/mol (860.9803 without restraints) Performing minimization step: 3158. Total energy = 863.2138 kcal/mol (860.9443 without restraints) Performing minimization step: 3159. Total energy = 863.1775 kcal/mol (860.9084 without restraints) Performing minimization step: 3160. Total energy = 863.1410 kcal/mol (860.8723 without restraints) Performing minimization step: 3161. Total energy = 863.1045 kcal/mol (860.8363 without restraints) Performing minimization step: 3162. Total energy = 863.0683 kcal/mol (860.8005 without restraints) Performing minimization step: 3163. Total energy = 863.0320 kcal/mol (860.7647 without restraints) Performing minimization step: 3164. Total energy = 862.9956 kcal/mol (860.7287 without restraints) Performing minimization step: 3165. Total energy = 862.9592 kcal/mol (860.6927 without restraints) Performing minimization step: 3166. Total energy = 862.9228 kcal/mol (860.6568 without restraints) Performing minimization step: 3167. Total energy = 862.8865 kcal/mol (860.6208 without restraints) Performing minimization step: 3168. Total energy = 862.8502 kcal/mol (860.5851 without restraints) Performing minimization step: 3169. Total energy = 862.8140 kcal/mol (860.5492 without restraints) Performing minimization step: 3170. Total energy = 862.7779 kcal/mol (860.5135 without restraints) Performing minimization step: 3171. Total energy = 862.7416 kcal/mol (860.4777 without restraints) Performing minimization step: 3172. Total energy = 862.7053 kcal/mol (860.4418 without restraints) Performing minimization step: 3173. Total energy = 862.6693 kcal/mol (860.4063 without restraints) Performing minimization step: 3174. Total energy = 862.6333 kcal/mol (860.3707 without restraints) Performing minimization step: 3175. Total energy = 862.5972 kcal/mol (860.3351 without restraints) Performing minimization step: 3176. Total energy = 862.5611 kcal/mol (860.2993 without restraints) Performing minimization step: 3177. Total energy = 862.5251 kcal/mol (860.2637 without restraints) Performing minimization step: 3178. Total energy = 862.4889 kcal/mol (860.2282 without restraints) Performing minimization step: 3179. Total energy = 862.4532 kcal/mol (860.1927 without restraints) Performing minimization step: 3180. Total energy = 862.4171 kcal/mol (860.1570 without restraints) Performing minimization step: 3181. Total energy = 862.3809 kcal/mol (860.1212 without restraints) Performing minimization step: 3182. Total energy = 862.3448 kcal/mol (860.0855 without restraints) Performing minimization step: 3183. Total energy = 862.3088 kcal/mol (860.0499 without restraints) Performing minimization step: 3184. Total energy = 862.2729 kcal/mol (860.0146 without restraints) Performing minimization step: 3185. Total energy = 862.2374 kcal/mol (859.9794 without restraints) Performing minimization step: 3186. Total energy = 862.2014 kcal/mol (859.9439 without restraints) Performing minimization step: 3187. Total energy = 862.1654 kcal/mol (859.9083 without restraints) Performing minimization step: 3188. Total energy = 862.1295 kcal/mol (859.8728 without restraints) Performing minimization step: 3189. Total energy = 862.0936 kcal/mol (859.8373 without restraints) Performing minimization step: 3190. Total energy = 862.0580 kcal/mol (859.8021 without restraints) Performing minimization step: 3191. Total energy = 862.0224 kcal/mol (859.7669 without restraints) Performing minimization step: 3192. Total energy = 861.9863 kcal/mol (859.7312 without restraints) Performing minimization step: 3193. Total energy = 861.9504 kcal/mol (859.6958 without restraints) Performing minimization step: 3194. Total energy = 861.9150 kcal/mol (859.6608 without restraints) Performing minimization step: 3195. Total energy = 861.8792 kcal/mol (859.6254 without restraints) Performing minimization step: 3196. Total energy = 861.8434 kcal/mol (859.5900 without restraints) Performing minimization step: 3197. Total energy = 861.8078 kcal/mol (859.5549 without restraints) Performing minimization step: 3198. Total energy = 861.7721 kcal/mol (859.5196 without restraints) Performing minimization step: 3199. Total energy = 861.7364 kcal/mol (859.4843 without restraints) Performing minimization step: 3200. Total energy = 861.7010 kcal/mol (859.4492 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 861.6653 kcal/mol (859.4140 without restraints) Performing minimization step: 3202. Total energy = 861.6299 kcal/mol (859.3792 without restraints) Performing minimization step: 3203. Total energy = 861.5945 kcal/mol (859.3440 without restraints) Performing minimization step: 3204. Total energy = 861.5587 kcal/mol (859.3086 without restraints) Performing minimization step: 3205. Total energy = 861.5231 kcal/mol (859.2734 without restraints) Performing minimization step: 3206. Total energy = 861.4880 kcal/mol (859.2387 without restraints) Performing minimization step: 3207. Total energy = 861.4525 kcal/mol (859.2036 without restraints) Performing minimization step: 3208. Total energy = 861.4170 kcal/mol (859.1685 without restraints) Performing minimization step: 3209. Total energy = 861.3815 kcal/mol (859.1334 without restraints) Performing minimization step: 3210. Total energy = 861.3460 kcal/mol (859.0983 without restraints) Performing minimization step: 3211. Total energy = 861.3105 kcal/mol (859.0633 without restraints) Performing minimization step: 3212. Total energy = 861.2749 kcal/mol (859.0281 without restraints) Performing minimization step: 3213. Total energy = 861.2395 kcal/mol (858.9931 without restraints) Performing minimization step: 3214. Total energy = 861.2042 kcal/mol (858.9582 without restraints) Performing minimization step: 3215. Total energy = 861.1689 kcal/mol (858.9233 without restraints) Performing minimization step: 3216. Total energy = 861.1337 kcal/mol (858.8886 without restraints) Performing minimization step: 3217. Total energy = 861.0985 kcal/mol (858.8537 without restraints) Performing minimization step: 3218. Total energy = 861.0632 kcal/mol (858.8188 without restraints) Performing minimization step: 3219. Total energy = 861.0279 kcal/mol (858.7839 without restraints) Performing minimization step: 3220. Total energy = 860.9927 kcal/mol (858.7491 without restraints) Performing minimization step: 3221. Total energy = 860.9574 kcal/mol (858.7142 without restraints) Performing minimization step: 3222. Total energy = 860.9222 kcal/mol (858.6794 without restraints) Performing minimization step: 3223. Total energy = 860.8870 kcal/mol (858.6447 without restraints) Performing minimization step: 3224. Total energy = 860.8520 kcal/mol (858.6101 without restraints) Performing minimization step: 3225. Total energy = 860.8169 kcal/mol (858.5753 without restraints) Performing minimization step: 3226. Total energy = 860.7820 kcal/mol (858.5409 without restraints) Performing minimization step: 3227. Total energy = 860.7469 kcal/mol (858.5062 without restraints) Performing minimization step: 3228. Total energy = 860.7118 kcal/mol (858.4715 without restraints) Performing minimization step: 3229. Total energy = 860.6770 kcal/mol (858.4370 without restraints) Performing minimization step: 3230. Total energy = 860.6423 kcal/mol (858.4030 without restraints) Performing minimization step: 3231. Total energy = 860.6075 kcal/mol (858.3684 without restraints) Performing minimization step: 3232. Total energy = 860.5726 kcal/mol (858.3338 without restraints) Performing minimization step: 3233. Total energy = 860.5380 kcal/mol (858.2996 without restraints) Performing minimization step: 3234. Total energy = 860.5033 kcal/mol (858.2653 without restraints) Performing minimization step: 3235. Total energy = 860.4684 kcal/mol (858.2308 without restraints) Performing minimization step: 3236. Total energy = 860.4334 kcal/mol (858.1963 without restraints) Performing minimization step: 3237. Total energy = 860.3988 kcal/mol (858.1620 without restraints) Performing minimization step: 3238. Total energy = 860.3642 kcal/mol (858.1278 without restraints) Performing minimization step: 3239. Total energy = 860.3294 kcal/mol (858.0934 without restraints) Performing minimization step: 3240. Total energy = 860.2946 kcal/mol (858.0590 without restraints) Performing minimization step: 3241. Total energy = 860.2602 kcal/mol (858.0249 without restraints) Performing minimization step: 3242. Total energy = 860.2254 kcal/mol (857.9906 without restraints) Performing minimization step: 3243. Total energy = 860.1910 kcal/mol (857.9566 without restraints) Performing minimization step: 3244. Total energy = 860.1563 kcal/mol (857.9222 without restraints) Performing minimization step: 3245. Total energy = 860.1216 kcal/mol (857.8879 without restraints) Performing minimization step: 3246. Total energy = 860.0869 kcal/mol (857.8536 without restraints) Performing minimization step: 3247. Total energy = 860.0522 kcal/mol (857.8194 without restraints) Performing minimization step: 3248. Total energy = 860.0176 kcal/mol (857.7852 without restraints) Performing minimization step: 3249. Total energy = 859.9832 kcal/mol (857.7512 without restraints) Performing minimization step: 3250. Total energy = 859.9487 kcal/mol (857.7170 without restraints) Performing minimization step: 3251. Total energy = 859.9141 kcal/mol (857.6828 without restraints) Performing minimization step: 3252. Total energy = 859.8796 kcal/mol (857.6486 without restraints) Performing minimization step: 3253. Total energy = 859.8453 kcal/mol (857.6147 without restraints) Performing minimization step: 3254. Total energy = 859.8108 kcal/mol (857.5806 without restraints) Performing minimization step: 3255. Total energy = 859.7764 kcal/mol (857.5467 without restraints) Performing minimization step: 3256. Total energy = 859.7418 kcal/mol (857.5125 without restraints) Performing minimization step: 3257. Total energy = 859.7079 kcal/mol (857.4789 without restraints) Performing minimization step: 3258. Total energy = 859.6735 kcal/mol (857.4449 without restraints) Performing minimization step: 3259. Total energy = 859.6391 kcal/mol (857.4109 without restraints) Performing minimization step: 3260. Total energy = 859.6051 kcal/mol (857.3774 without restraints) Performing minimization step: 3261. Total energy = 859.5709 kcal/mol (857.3435 without restraints) Performing minimization step: 3262. Total energy = 859.5366 kcal/mol (857.3096 without restraints) Performing minimization step: 3263. Total energy = 859.5023 kcal/mol (857.2757 without restraints) Performing minimization step: 3264. Total energy = 859.4681 kcal/mol (857.2418 without restraints) Performing minimization step: 3265. Total energy = 859.4341 kcal/mol (857.2082 without restraints) Performing minimization step: 3266. Total energy = 859.3998 kcal/mol (857.1743 without restraints) Performing minimization step: 3267. Total energy = 859.3656 kcal/mol (857.1405 without restraints) Performing minimization step: 3268. Total energy = 859.3316 kcal/mol (857.1068 without restraints) Performing minimization step: 3269. Total energy = 859.2974 kcal/mol (857.0730 without restraints) Performing minimization step: 3270. Total energy = 859.2634 kcal/mol (857.0395 without restraints) Performing minimization step: 3271. Total energy = 859.2296 kcal/mol (857.0060 without restraints) Performing minimization step: 3272. Total energy = 859.1955 kcal/mol (856.9723 without restraints) Performing minimization step: 3273. Total energy = 859.1617 kcal/mol (856.9388 without restraints) Performing minimization step: 3274. Total energy = 859.1277 kcal/mol (856.9054 without restraints) Performing minimization step: 3275. Total energy = 859.0938 kcal/mol (856.8717 without restraints) Performing minimization step: 3276. Total energy = 859.0598 kcal/mol (856.8381 without restraints) Performing minimization step: 3277. Total energy = 859.0259 kcal/mol (856.8045 without restraints) Performing minimization step: 3278. Total energy = 858.9919 kcal/mol (856.7710 without restraints) Performing minimization step: 3279. Total energy = 858.9581 kcal/mol (856.7375 without restraints) Performing minimization step: 3280. Total energy = 858.9242 kcal/mol (856.7040 without restraints) Performing minimization step: 3281. Total energy = 858.8903 kcal/mol (856.6705 without restraints) Performing minimization step: 3282. Total energy = 858.8565 kcal/mol (856.6370 without restraints) Performing minimization step: 3283. Total energy = 858.8227 kcal/mol (856.6036 without restraints) Performing minimization step: 3284. Total energy = 858.7891 kcal/mol (856.5704 without restraints) Performing minimization step: 3285. Total energy = 858.7554 kcal/mol (856.5370 without restraints) Performing minimization step: 3286. Total energy = 858.7216 kcal/mol (856.5037 without restraints) Performing minimization step: 3287. Total energy = 858.6879 kcal/mol (856.4703 without restraints) Performing minimization step: 3288. Total energy = 858.6542 kcal/mol (856.4370 without restraints) Performing minimization step: 3289. Total energy = 858.6205 kcal/mol (856.4037 without restraints) Performing minimization step: 3290. Total energy = 858.5869 kcal/mol (856.3704 without restraints) Performing minimization step: 3291. Total energy = 858.5537 kcal/mol (856.3381 without restraints) Performing minimization step: 3292. Total energy = 858.5206 kcal/mol (856.3049 without restraints) Performing minimization step: 3293. Total energy = 858.4872 kcal/mol (856.2718 without restraints) Performing minimization step: 3294. Total energy = 858.4537 kcal/mol (856.2387 without restraints) Performing minimization step: 3295. Total energy = 858.4201 kcal/mol (856.2055 without restraints) Performing minimization step: 3296. Total energy = 858.3866 kcal/mol (856.1724 without restraints) Performing minimization step: 3297. Total energy = 858.3532 kcal/mol (856.1393 without restraints) Performing minimization step: 3298. Total energy = 858.3199 kcal/mol (856.1064 without restraints) Performing minimization step: 3299. Total energy = 858.2865 kcal/mol (856.0733 without restraints) Performing minimization step: 3300. Total energy = 858.2530 kcal/mol (856.0403 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 858.2199 kcal/mol (856.0075 without restraints) Performing minimization step: 3302. Total energy = 858.1867 kcal/mol (855.9747 without restraints) Performing minimization step: 3303. Total energy = 858.1534 kcal/mol (855.9417 without restraints) Performing minimization step: 3304. Total energy = 858.1203 kcal/mol (855.9089 without restraints) Performing minimization step: 3305. Total energy = 858.0870 kcal/mol (855.8760 without restraints) Performing minimization step: 3306. Total energy = 858.0537 kcal/mol (855.8431 without restraints) Performing minimization step: 3307. Total energy = 858.0207 kcal/mol (855.8104 without restraints) Performing minimization step: 3308. Total energy = 857.9874 kcal/mol (855.7776 without restraints) Performing minimization step: 3309. Total energy = 857.9543 kcal/mol (855.7447 without restraints) Performing minimization step: 3310. Total energy = 857.9211 kcal/mol (855.7119 without restraints) Performing minimization step: 3311. Total energy = 857.8879 kcal/mol (855.6791 without restraints) Performing minimization step: 3312. Total energy = 857.8548 kcal/mol (855.6464 without restraints) Performing minimization step: 3313. Total energy = 857.8217 kcal/mol (855.6137 without restraints) Performing minimization step: 3314. Total energy = 857.7886 kcal/mol (855.5809 without restraints) Performing minimization step: 3315. Total energy = 857.7556 kcal/mol (855.5483 without restraints) Performing minimization step: 3316. Total energy = 857.7226 kcal/mol (855.5156 without restraints) Performing minimization step: 3317. Total energy = 857.6900 kcal/mol (855.4834 without restraints) Performing minimization step: 3318. Total energy = 857.6570 kcal/mol (855.4508 without restraints) Performing minimization step: 3319. Total energy = 857.6240 kcal/mol (855.4181 without restraints) Performing minimization step: 3320. Total energy = 857.5911 kcal/mol (855.3855 without restraints) Performing minimization step: 3321. Total energy = 857.5582 kcal/mol (855.3530 without restraints) Performing minimization step: 3322. Total energy = 857.5253 kcal/mol (855.3205 without restraints) Performing minimization step: 3323. Total energy = 857.4925 kcal/mol (855.2880 without restraints) Performing minimization step: 3324. Total energy = 857.4596 kcal/mol (855.2555 without restraints) Performing minimization step: 3325. Total energy = 857.4269 kcal/mol (855.2232 without restraints) Performing minimization step: 3326. Total energy = 857.3944 kcal/mol (855.1910 without restraints) Performing minimization step: 3327. Total energy = 857.3617 kcal/mol (855.1586 without restraints) Performing minimization step: 3328. Total energy = 857.3287 kcal/mol (855.1260 without restraints) Performing minimization step: 3329. Total energy = 857.2960 kcal/mol (855.0936 without restraints) Performing minimization step: 3330. Total energy = 857.2633 kcal/mol (855.0613 without restraints) Performing minimization step: 3331. Total energy = 857.2309 kcal/mol (855.0292 without restraints) Performing minimization step: 3332. Total energy = 857.1983 kcal/mol (854.9970 without restraints) Performing minimization step: 3333. Total energy = 857.1657 kcal/mol (854.9647 without restraints) Performing minimization step: 3334. Total energy = 857.1333 kcal/mol (854.9327 without restraints) Performing minimization step: 3335. Total energy = 857.1008 kcal/mol (854.9005 without restraints) Performing minimization step: 3336. Total energy = 857.0687 kcal/mol (854.8687 without restraints) Performing minimization step: 3337. Total energy = 857.0361 kcal/mol (854.8366 without restraints) Performing minimization step: 3338. Total energy = 857.0037 kcal/mol (854.8044 without restraints) Performing minimization step: 3339. Total energy = 856.9712 kcal/mol (854.7723 without restraints) Performing minimization step: 3340. Total energy = 856.9390 kcal/mol (854.7404 without restraints) Performing minimization step: 3341. Total energy = 856.9065 kcal/mol (854.7084 without restraints) Performing minimization step: 3342. Total energy = 856.8741 kcal/mol (854.6763 without restraints) Performing minimization step: 3343. Total energy = 856.8418 kcal/mol (854.6443 without restraints) Performing minimization step: 3344. Total energy = 856.8096 kcal/mol (854.6124 without restraints) Performing minimization step: 3345. Total energy = 856.7774 kcal/mol (854.5806 without restraints) Performing minimization step: 3346. Total energy = 856.7458 kcal/mol (854.5496 without restraints) Performing minimization step: 3347. Total energy = 856.7138 kcal/mol (854.5177 without restraints) Performing minimization step: 3348. Total energy = 856.6816 kcal/mol (854.4858 without restraints) Performing minimization step: 3349. Total energy = 856.6494 kcal/mol (854.4539 without restraints) Performing minimization step: 3350. Total energy = 856.6172 kcal/mol (854.4221 without restraints) Performing minimization step: 3351. Total energy = 856.5850 kcal/mol (854.3902 without restraints) Performing minimization step: 3352. Total energy = 856.5528 kcal/mol (854.3584 without restraints) Performing minimization step: 3353. Total energy = 856.5209 kcal/mol (854.3268 without restraints) Performing minimization step: 3354. Total energy = 856.4888 kcal/mol (854.2951 without restraints) Performing minimization step: 3355. Total energy = 856.4567 kcal/mol (854.2633 without restraints) Performing minimization step: 3356. Total energy = 856.4246 kcal/mol (854.2316 without restraints) Performing minimization step: 3357. Total energy = 856.3926 kcal/mol (854.1999 without restraints) Performing minimization step: 3358. Total energy = 856.3608 kcal/mol (854.1685 without restraints) Performing minimization step: 3359. Total energy = 856.3289 kcal/mol (854.1369 without restraints) Performing minimization step: 3360. Total energy = 856.2969 kcal/mol (854.1053 without restraints) Performing minimization step: 3361. Total energy = 856.2652 kcal/mol (854.0739 without restraints) Performing minimization step: 3362. Total energy = 856.2334 kcal/mol (854.0425 without restraints) Performing minimization step: 3363. Total energy = 856.2017 kcal/mol (854.0110 without restraints) Performing minimization step: 3364. Total energy = 856.1698 kcal/mol (853.9795 without restraints) Performing minimization step: 3365. Total energy = 856.1377 kcal/mol (853.9477 without restraints) Performing minimization step: 3366. Total energy = 856.1059 kcal/mol (853.9163 without restraints) Performing minimization step: 3367. Total energy = 856.0741 kcal/mol (853.8848 without restraints) Performing minimization step: 3368. Total energy = 856.0424 kcal/mol (853.8534 without restraints) Performing minimization step: 3369. Total energy = 856.0111 kcal/mol (853.8224 without restraints) Performing minimization step: 3370. Total energy = 855.9798 kcal/mol (853.7914 without restraints) Performing minimization step: 3371. Total energy = 855.9481 kcal/mol (853.7601 without restraints) Performing minimization step: 3372. Total energy = 855.9165 kcal/mol (853.7288 without restraints) Performing minimization step: 3373. Total energy = 855.8849 kcal/mol (853.6975 without restraints) Performing minimization step: 3374. Total energy = 855.8535 kcal/mol (853.6665 without restraints) Performing minimization step: 3375. Total energy = 855.8219 kcal/mol (853.6352 without restraints) Performing minimization step: 3376. Total energy = 855.7909 kcal/mol (853.6046 without restraints) Performing minimization step: 3377. Total energy = 855.7597 kcal/mol (853.5737 without restraints) Performing minimization step: 3378. Total energy = 855.7283 kcal/mol (853.5426 without restraints) Performing minimization step: 3379. Total energy = 855.6967 kcal/mol (853.5113 without restraints) Performing minimization step: 3380. Total energy = 855.6654 kcal/mol (853.4804 without restraints) Performing minimization step: 3381. Total energy = 855.6340 kcal/mol (853.4493 without restraints) Performing minimization step: 3382. Total energy = 855.6026 kcal/mol (853.4182 without restraints) Performing minimization step: 3383. Total energy = 855.5712 kcal/mol (853.3871 without restraints) Performing minimization step: 3384. Total energy = 855.5398 kcal/mol (853.3561 without restraints) Performing minimization step: 3385. Total energy = 855.5085 kcal/mol (853.3251 without restraints) Performing minimization step: 3386. Total energy = 855.4772 kcal/mol (853.2941 without restraints) Performing minimization step: 3387. Total energy = 855.4459 kcal/mol (853.2631 without restraints) Performing minimization step: 3388. Total energy = 855.4149 kcal/mol (853.2326 without restraints) Performing minimization step: 3389. Total energy = 855.3838 kcal/mol (853.2017 without restraints) Performing minimization step: 3390. Total energy = 855.3526 kcal/mol (853.1708 without restraints) Performing minimization step: 3391. Total energy = 855.3214 kcal/mol (853.1399 without restraints) Performing minimization step: 3392. Total energy = 855.2902 kcal/mol (853.1090 without restraints) Performing minimization step: 3393. Total energy = 855.2589 kcal/mol (853.0780 without restraints) Performing minimization step: 3394. Total energy = 855.2277 kcal/mol (853.0472 without restraints) Performing minimization step: 3395. Total energy = 855.1966 kcal/mol (853.0164 without restraints) Performing minimization step: 3396. Total energy = 855.1658 kcal/mol (852.9859 without restraints) Performing minimization step: 3397. Total energy = 855.1347 kcal/mol (852.9552 without restraints) Performing minimization step: 3398. Total energy = 855.1041 kcal/mol (852.9248 without restraints) Performing minimization step: 3399. Total energy = 855.0731 kcal/mol (852.8942 without restraints) Performing minimization step: 3400. Total energy = 855.0422 kcal/mol (852.8637 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 855.0116 kcal/mol (852.8333 without restraints) Performing minimization step: 3402. Total energy = 854.9806 kcal/mol (852.8026 without restraints) Performing minimization step: 3403. Total energy = 854.9499 kcal/mol (852.7723 without restraints) Performing minimization step: 3404. Total energy = 854.9191 kcal/mol (852.7418 without restraints) Performing minimization step: 3405. Total energy = 854.8883 kcal/mol (852.7112 without restraints) Performing minimization step: 3406. Total energy = 854.8574 kcal/mol (852.6807 without restraints) Performing minimization step: 3407. Total energy = 854.8266 kcal/mol (852.6502 without restraints) Performing minimization step: 3408. Total energy = 854.7959 kcal/mol (852.6198 without restraints) Performing minimization step: 3409. Total energy = 854.7651 kcal/mol (852.5893 without restraints) Performing minimization step: 3410. Total energy = 854.7344 kcal/mol (852.5589 without restraints) Performing minimization step: 3411. Total energy = 854.7037 kcal/mol (852.5285 without restraints) Performing minimization step: 3412. Total energy = 854.6730 kcal/mol (852.4981 without restraints) Performing minimization step: 3413. Total energy = 854.6423 kcal/mol (852.4678 without restraints) Performing minimization step: 3414. Total energy = 854.6119 kcal/mol (852.4377 without restraints) Performing minimization step: 3415. Total energy = 854.5813 kcal/mol (852.4074 without restraints) Performing minimization step: 3416. Total energy = 854.5505 kcal/mol (852.3769 without restraints) Performing minimization step: 3417. Total energy = 854.5200 kcal/mol (852.3466 without restraints) Performing minimization step: 3418. Total energy = 854.4894 kcal/mol (852.3164 without restraints) Performing minimization step: 3419. Total energy = 854.4589 kcal/mol (852.2862 without restraints) Performing minimization step: 3420. Total energy = 854.4284 kcal/mol (852.2560 without restraints) Performing minimization step: 3421. Total energy = 854.3981 kcal/mol (852.2260 without restraints) Performing minimization step: 3422. Total energy = 854.3680 kcal/mol (852.1963 without restraints) Performing minimization step: 3423. Total energy = 854.3377 kcal/mol (852.1662 without restraints) Performing minimization step: 3424. Total energy = 854.3072 kcal/mol (852.1359 without restraints) Performing minimization step: 3425. Total energy = 854.2767 kcal/mol (852.1058 without restraints) Performing minimization step: 3426. Total energy = 854.2464 kcal/mol (852.0760 without restraints) Performing minimization step: 3427. Total energy = 854.2164 kcal/mol (852.0461 without restraints) Performing minimization step: 3428. Total energy = 854.1861 kcal/mol (852.0161 without restraints) Performing minimization step: 3429. Total energy = 854.1560 kcal/mol (851.9863 without restraints) Performing minimization step: 3430. Total energy = 854.1257 kcal/mol (851.9564 without restraints) Performing minimization step: 3431. Total energy = 854.0955 kcal/mol (851.9264 without restraints) Performing minimization step: 3432. Total energy = 854.0653 kcal/mol (851.8965 without restraints) Performing minimization step: 3433. Total energy = 854.0352 kcal/mol (851.8667 without restraints) Performing minimization step: 3434. Total energy = 854.0052 kcal/mol (851.8370 without restraints) Performing minimization step: 3435. Total energy = 853.9750 kcal/mol (851.8071 without restraints) Performing minimization step: 3436. Total energy = 853.9449 kcal/mol (851.7773 without restraints) Performing minimization step: 3437. Total energy = 853.9148 kcal/mol (851.7475 without restraints) Performing minimization step: 3438. Total energy = 853.8847 kcal/mol (851.7177 without restraints) Performing minimization step: 3439. Total energy = 853.8547 kcal/mol (851.6880 without restraints) Performing minimization step: 3440. Total energy = 853.8249 kcal/mol (851.6585 without restraints) Performing minimization step: 3441. Total energy = 853.7949 kcal/mol (851.6288 without restraints) Performing minimization step: 3442. Total energy = 853.7649 kcal/mol (851.5991 without restraints) Performing minimization step: 3443. Total energy = 853.7354 kcal/mol (851.5699 without restraints) Performing minimization step: 3444. Total energy = 853.7055 kcal/mol (851.5403 without restraints) Performing minimization step: 3445. Total energy = 853.6764 kcal/mol (851.5114 without restraints) Performing minimization step: 3446. Total energy = 853.6469 kcal/mol (851.4823 without restraints) Performing minimization step: 3447. Total energy = 853.6171 kcal/mol (851.4527 without restraints) Performing minimization step: 3448. Total energy = 853.5873 kcal/mol (851.4233 without restraints) Performing minimization step: 3449. Total energy = 853.5575 kcal/mol (851.3938 without restraints) Performing minimization step: 3450. Total energy = 853.5282 kcal/mol (851.3647 without restraints) Performing minimization step: 3451. Total energy = 853.4985 kcal/mol (851.3353 without restraints) Performing minimization step: 3452. Total energy = 853.4687 kcal/mol (851.3058 without restraints) Performing minimization step: 3453. Total energy = 853.4390 kcal/mol (851.2764 without restraints) Performing minimization step: 3454. Total energy = 853.4098 kcal/mol (851.2474 without restraints) Performing minimization step: 3455. Total energy = 853.3801 kcal/mol (851.2181 without restraints) Performing minimization step: 3456. Total energy = 853.3505 kcal/mol (851.1887 without restraints) Performing minimization step: 3457. Total energy = 853.3209 kcal/mol (851.1594 without restraints) Performing minimization step: 3458. Total energy = 853.2913 kcal/mol (851.1301 without restraints) Performing minimization step: 3459. Total energy = 853.2618 kcal/mol (851.1009 without restraints) Performing minimization step: 3460. Total energy = 853.2320 kcal/mol (851.0714 without restraints) Performing minimization step: 3461. Total energy = 853.2028 kcal/mol (851.0424 without restraints) Performing minimization step: 3462. Total energy = 853.1733 kcal/mol (851.0132 without restraints) Performing minimization step: 3463. Total energy = 853.1440 kcal/mol (850.9843 without restraints) Performing minimization step: 3464. Total energy = 853.1146 kcal/mol (850.9551 without restraints) Performing minimization step: 3465. Total energy = 853.0854 kcal/mol (850.9262 without restraints) Performing minimization step: 3466. Total energy = 853.0560 kcal/mol (850.8971 without restraints) Performing minimization step: 3467. Total energy = 853.0266 kcal/mol (850.8680 without restraints) Performing minimization step: 3468. Total energy = 852.9973 kcal/mol (850.8389 without restraints) Performing minimization step: 3469. Total energy = 852.9680 kcal/mol (850.8099 without restraints) Performing minimization step: 3470. Total energy = 852.9387 kcal/mol (850.7809 without restraints) Performing minimization step: 3471. Total energy = 852.9094 kcal/mol (850.7519 without restraints) Performing minimization step: 3472. Total energy = 852.8802 kcal/mol (850.7229 without restraints) Performing minimization step: 3473. Total energy = 852.8510 kcal/mol (850.6939 without restraints) Performing minimization step: 3474. Total energy = 852.8218 kcal/mol (850.6650 without restraints) Performing minimization step: 3475. Total energy = 852.7930 kcal/mol (850.6365 without restraints) Performing minimization step: 3476. Total energy = 852.7639 kcal/mol (850.6077 without restraints) Performing minimization step: 3477. Total energy = 852.7348 kcal/mol (850.5789 without restraints) Performing minimization step: 3478. Total energy = 852.7057 kcal/mol (850.5501 without restraints) Performing minimization step: 3479. Total energy = 852.6765 kcal/mol (850.5211 without restraints) Performing minimization step: 3480. Total energy = 852.6474 kcal/mol (850.4923 without restraints) Performing minimization step: 3481. Total energy = 852.6184 kcal/mol (850.4636 without restraints) Performing minimization step: 3482. Total energy = 852.5891 kcal/mol (850.4346 without restraints) Performing minimization step: 3483. Total energy = 852.5600 kcal/mol (850.4057 without restraints) Performing minimization step: 3484. Total energy = 852.5312 kcal/mol (850.3772 without restraints) Performing minimization step: 3485. Total energy = 852.5021 kcal/mol (850.3483 without restraints) Performing minimization step: 3486. Total energy = 852.4731 kcal/mol (850.3195 without restraints) Performing minimization step: 3487. Total energy = 852.4445 kcal/mol (850.2913 without restraints) Performing minimization step: 3488. Total energy = 852.4162 kcal/mol (850.2633 without restraints) Performing minimization step: 3489. Total energy = 852.3874 kcal/mol (850.2348 without restraints) Performing minimization step: 3490. Total energy = 852.3587 kcal/mol (850.2065 without restraints) Performing minimization step: 3491. Total energy = 852.3301 kcal/mol (850.1779 without restraints) Performing minimization step: 3492. Total energy = 852.3013 kcal/mol (850.1494 without restraints) Performing minimization step: 3493. Total energy = 852.2724 kcal/mol (850.1208 without restraints) Performing minimization step: 3494. Total energy = 852.2437 kcal/mol (850.0923 without restraints) Performing minimization step: 3495. Total energy = 852.2152 kcal/mol (850.0641 without restraints) Performing minimization step: 3496. Total energy = 852.1865 kcal/mol (850.0357 without restraints) Performing minimization step: 3497. Total energy = 852.1581 kcal/mol (850.0075 without restraints) Performing minimization step: 3498. Total energy = 852.1295 kcal/mol (849.9792 without restraints) Performing minimization step: 3499. Total energy = 852.1009 kcal/mol (849.9508 without restraints) Performing minimization step: 3500. Total energy = 852.0723 kcal/mol (849.9225 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 852.0438 kcal/mol (849.8943 without restraints) Performing minimization step: 3502. Total energy = 852.0153 kcal/mol (849.8660 without restraints) Performing minimization step: 3503. Total energy = 851.9868 kcal/mol (849.8378 without restraints) Performing minimization step: 3504. Total energy = 851.9583 kcal/mol (849.8096 without restraints) Performing minimization step: 3505. Total energy = 851.9299 kcal/mol (849.7814 without restraints) Performing minimization step: 3506. Total energy = 851.9019 kcal/mol (849.7536 without restraints) Performing minimization step: 3507. Total energy = 851.8735 kcal/mol (849.7255 without restraints) Performing minimization step: 3508. Total energy = 851.8451 kcal/mol (849.6974 without restraints) Performing minimization step: 3509. Total energy = 851.8168 kcal/mol (849.6693 without restraints) Performing minimization step: 3510. Total energy = 851.7889 kcal/mol (849.6417 without restraints) Performing minimization step: 3511. Total energy = 851.7607 kcal/mol (849.6138 without restraints) Performing minimization step: 3512. Total energy = 851.7325 kcal/mol (849.5858 without restraints) Performing minimization step: 3513. Total energy = 851.7042 kcal/mol (849.5578 without restraints) Performing minimization step: 3514. Total energy = 851.6760 kcal/mol (849.5298 without restraints) Performing minimization step: 3515. Total energy = 851.6478 kcal/mol (849.5018 without restraints) Performing minimization step: 3516. Total energy = 851.6196 kcal/mol (849.4739 without restraints) Performing minimization step: 3517. Total energy = 851.5917 kcal/mol (849.4462 without restraints) Performing minimization step: 3518. Total energy = 851.5636 kcal/mol (849.4183 without restraints) Performing minimization step: 3519. Total energy = 851.5355 kcal/mol (849.3905 without restraints) Performing minimization step: 3520. Total energy = 851.5074 kcal/mol (849.3626 without restraints) Performing minimization step: 3521. Total energy = 851.4793 kcal/mol (849.3348 without restraints) Performing minimization step: 3522. Total energy = 851.4515 kcal/mol (849.3072 without restraints) Performing minimization step: 3523. Total energy = 851.4235 kcal/mol (849.2795 without restraints) Performing minimization step: 3524. Total energy = 851.3955 kcal/mol (849.2518 without restraints) Performing minimization step: 3525. Total energy = 851.3676 kcal/mol (849.2241 without restraints) Performing minimization step: 3526. Total energy = 851.3396 kcal/mol (849.1964 without restraints) Performing minimization step: 3527. Total energy = 851.3117 kcal/mol (849.1687 without restraints) Performing minimization step: 3528. Total energy = 851.2838 kcal/mol (849.1411 without restraints) Performing minimization step: 3529. Total energy = 851.2560 kcal/mol (849.1135 without restraints) Performing minimization step: 3530. Total energy = 851.2282 kcal/mol (849.0859 without restraints) Performing minimization step: 3531. Total energy = 851.2001 kcal/mol (849.0580 without restraints) Performing minimization step: 3532. Total energy = 851.1725 kcal/mol (849.0307 without restraints) Performing minimization step: 3533. Total energy = 851.1448 kcal/mol (849.0032 without restraints) Performing minimization step: 3534. Total energy = 851.1170 kcal/mol (848.9757 without restraints) Performing minimization step: 3535. Total energy = 851.0896 kcal/mol (848.9485 without restraints) Performing minimization step: 3536. Total energy = 851.0618 kcal/mol (848.9208 without restraints) Performing minimization step: 3537. Total energy = 851.0340 kcal/mol (848.8934 without restraints) Performing minimization step: 3538. Total energy = 851.0064 kcal/mol (848.8660 without restraints) Performing minimization step: 3539. Total energy = 850.9790 kcal/mol (848.8388 without restraints) Performing minimization step: 3540. Total energy = 850.9514 kcal/mol (848.8115 without restraints) Performing minimization step: 3541. Total energy = 850.9238 kcal/mol (848.7841 without restraints) Performing minimization step: 3542. Total energy = 850.8967 kcal/mol (848.7573 without restraints) Performing minimization step: 3543. Total energy = 850.8692 kcal/mol (848.7300 without restraints) Performing minimization step: 3544. Total energy = 850.8417 kcal/mol (848.7028 without restraints) Performing minimization step: 3545. Total energy = 850.8143 kcal/mol (848.6756 without restraints) Performing minimization step: 3546. Total energy = 850.7868 kcal/mol (848.6483 without restraints) Performing minimization step: 3547. Total energy = 850.7594 kcal/mol (848.6211 without restraints) Performing minimization step: 3548. Total energy = 850.7320 kcal/mol (848.5940 without restraints) Performing minimization step: 3549. Total energy = 850.7045 kcal/mol (848.5667 without restraints) Performing minimization step: 3550. Total energy = 850.6772 kcal/mol (848.5396 without restraints) Performing minimization step: 3551. Total energy = 850.6501 kcal/mol (848.5127 without restraints) Performing minimization step: 3552. Total energy = 850.6229 kcal/mol (848.4857 without restraints) Performing minimization step: 3553. Total energy = 850.5956 kcal/mol (848.4587 without restraints) Performing minimization step: 3554. Total energy = 850.5682 kcal/mol (848.4315 without restraints) Performing minimization step: 3555. Total energy = 850.5409 kcal/mol (848.4044 without restraints) Performing minimization step: 3556. Total energy = 850.5138 kcal/mol (848.3776 without restraints) Performing minimization step: 3557. Total energy = 850.4867 kcal/mol (848.3507 without restraints) Performing minimization step: 3558. Total energy = 850.4599 kcal/mol (848.3241 without restraints) Performing minimization step: 3559. Total energy = 850.4327 kcal/mol (848.2971 without restraints) Performing minimization step: 3560. Total energy = 850.4060 kcal/mol (848.2707 without restraints) Performing minimization step: 3561. Total energy = 850.3789 kcal/mol (848.2438 without restraints) Performing minimization step: 3562. Total energy = 850.3523 kcal/mol (848.2174 without restraints) Performing minimization step: 3563. Total energy = 850.3251 kcal/mol (848.1904 without restraints) Performing minimization step: 3564. Total energy = 850.2983 kcal/mol (848.1638 without restraints) Performing minimization step: 3565. Total energy = 850.2712 kcal/mol (848.1370 without restraints) Performing minimization step: 3566. Total energy = 850.2449 kcal/mol (848.1110 without restraints) Performing minimization step: 3567. Total energy = 850.2180 kcal/mol (848.0842 without restraints) Performing minimization step: 3568. Total energy = 850.1918 kcal/mol (848.0583 without restraints) Performing minimization step: 3569. Total energy = 850.1652 kcal/mol (848.0319 without restraints) Performing minimization step: 3570. Total energy = 850.1395 kcal/mol (848.0066 without restraints) Performing minimization step: 3571. Total energy = 850.1131 kcal/mol (847.9802 without restraints) Performing minimization step: 3572. Total energy = 850.0880 kcal/mol (847.9557 without restraints) Performing minimization step: 3573. Total energy = 850.0619 kcal/mol (847.9296 without restraints) Performing minimization step: 3574. Total energy = 850.0376 kcal/mol (847.9058 without restraints) Performing minimization step: 3575. Total energy = 850.0119 kcal/mol (847.8802 without restraints) Performing minimization step: 3576. Total energy = 849.9884 kcal/mol (847.8572 without restraints) Performing minimization step: 3577. Total energy = 849.9631 kcal/mol (847.8319 without restraints) Performing minimization step: 3578. Total energy = 849.9399 kcal/mol (847.8091 without restraints) Performing minimization step: 3579. Total energy = 849.9148 kcal/mol (847.7840 without restraints) Performing minimization step: 3580. Total energy = 849.8918 kcal/mol (847.7615 without restraints) Performing minimization step: 3581. Total energy = 849.8669 kcal/mol (847.7365 without restraints) Performing minimization step: 3582. Total energy = 849.8440 kcal/mol (847.7141 without restraints) Performing minimization step: 3583. Total energy = 849.8194 kcal/mol (847.6896 without restraints) Performing minimization step: 3584. Total energy = 849.7968 kcal/mol (847.6672 without restraints) Performing minimization step: 3585. Total energy = 849.7722 kcal/mol (847.6426 without restraints) Performing minimization step: 3586. Total energy = 849.7496 kcal/mol (847.6205 without restraints) Performing minimization step: 3587. Total energy = 849.7251 kcal/mol (847.5959 without restraints) Performing minimization step: 3588. Total energy = 849.7029 kcal/mol (847.5741 without restraints) Performing minimization step: 3589. Total energy = 849.6784 kcal/mol (847.5495 without restraints) Performing minimization step: 3590. Total energy = 849.6559 kcal/mol (847.5276 without restraints) Performing minimization step: 3591. Total energy = 849.6313 kcal/mol (847.5027 without restraints) Performing minimization step: 3592. Total energy = 849.6089 kcal/mol (847.4809 without restraints) Performing minimization step: 3593. Total energy = 849.5847 kcal/mol (847.4565 without restraints) Performing minimization step: 3594. Total energy = 849.5624 kcal/mol (847.4348 without restraints) Performing minimization step: 3595. Total energy = 849.5383 kcal/mol (847.4105 without restraints) Performing minimization step: 3596. Total energy = 849.5161 kcal/mol (847.3889 without restraints) Performing minimization step: 3597. Total energy = 849.4921 kcal/mol (847.3647 without restraints) Performing minimization step: 3598. Total energy = 849.4700 kcal/mol (847.3431 without restraints) Performing minimization step: 3599. Total energy = 849.4459 kcal/mol (847.3190 without restraints) Performing minimization step: 3600. Total energy = 849.4241 kcal/mol (847.2976 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 849.4000 kcal/mol (847.2733 without restraints) Performing minimization step: 3602. Total energy = 849.3781 kcal/mol (847.2519 without restraints) Performing minimization step: 3603. Total energy = 849.3541 kcal/mol (847.2278 without restraints) Performing minimization step: 3604. Total energy = 849.3325 kcal/mol (847.2067 without restraints) Performing minimization step: 3605. Total energy = 849.3085 kcal/mol (847.1825 without restraints) Performing minimization step: 3606. Total energy = 849.2868 kcal/mol (847.1613 without restraints) Performing minimization step: 3607. Total energy = 849.2630 kcal/mol (847.1373 without restraints) Performing minimization step: 3608. Total energy = 849.2415 kcal/mol (847.1164 without restraints) Performing minimization step: 3609. Total energy = 849.2174 kcal/mol (847.0922 without restraints) Performing minimization step: 3610. Total energy = 849.1962 kcal/mol (847.0714 without restraints) Performing minimization step: 3611. Total energy = 849.1724 kcal/mol (847.0475 without restraints) Performing minimization step: 3612. Total energy = 849.1511 kcal/mol (847.0267 without restraints) Performing minimization step: 3613. Total energy = 849.1273 kcal/mol (847.0027 without restraints) Performing minimization step: 3614. Total energy = 849.1063 kcal/mol (846.9822 without restraints) Performing minimization step: 3615. Total energy = 849.0829 kcal/mol (846.9586 without restraints) Performing minimization step: 3616. Total energy = 849.0616 kcal/mol (846.9379 without restraints) Performing minimization step: 3617. Total energy = 849.0385 kcal/mol (846.9146 without restraints) Performing minimization step: 3618. Total energy = 849.0173 kcal/mol (846.8939 without restraints) Performing minimization step: 3619. Total energy = 848.9939 kcal/mol (846.8703 without restraints) Performing minimization step: 3620. Total energy = 848.9728 kcal/mol (846.8497 without restraints) Performing minimization step: 3621. Total energy = 848.9492 kcal/mol (846.8260 without restraints) Performing minimization step: 3622. Total energy = 848.9280 kcal/mol (846.8052 without restraints) Performing minimization step: 3623. Total energy = 848.9047 kcal/mol (846.7817 without restraints) Performing minimization step: 3624. Total energy = 848.8837 kcal/mol (846.7613 without restraints) Performing minimization step: 3625. Total energy = 848.8605 kcal/mol (846.7379 without restraints) Performing minimization step: 3626. Total energy = 848.8396 kcal/mol (846.7175 without restraints) Performing minimization step: 3627. Total energy = 848.8167 kcal/mol (846.6944 without restraints) Performing minimization step: 3628. Total energy = 848.7959 kcal/mol (846.6742 without restraints) Performing minimization step: 3629. Total energy = 848.7725 kcal/mol (846.6505 without restraints) Performing minimization step: 3630. Total energy = 848.7518 kcal/mol (846.6303 without restraints) Performing minimization step: 3631. Total energy = 848.7287 kcal/mol (846.6071 without restraints) Performing minimization step: 3632. Total energy = 848.7081 kcal/mol (846.5870 without restraints) Performing minimization step: 3633. Total energy = 848.6852 kcal/mol (846.5640 without restraints) Performing minimization step: 3634. Total energy = 848.6648 kcal/mol (846.5440 without restraints) Performing minimization step: 3635. Total energy = 848.6419 kcal/mol (846.5209 without restraints) Performing minimization step: 3636. Total energy = 848.6215 kcal/mol (846.5010 without restraints) Performing minimization step: 3637. Total energy = 848.5987 kcal/mol (846.4780 without restraints) Performing minimization step: 3638. Total energy = 848.5787 kcal/mol (846.4585 without restraints) Performing minimization step: 3639. Total energy = 848.5560 kcal/mol (846.4356 without restraints) Performing minimization step: 3640. Total energy = 848.5357 kcal/mol (846.4158 without restraints) Performing minimization step: 3641. Total energy = 848.5131 kcal/mol (846.3930 without restraints) Performing minimization step: 3642. Total energy = 848.4929 kcal/mol (846.3733 without restraints) Performing minimization step: 3643. Total energy = 848.4703 kcal/mol (846.3505 without restraints) Performing minimization step: 3644. Total energy = 848.4501 kcal/mol (846.3308 without restraints) Performing minimization step: 3645. Total energy = 848.4276 kcal/mol (846.3081 without restraints) Performing minimization step: 3646. Total energy = 848.4075 kcal/mol (846.2885 without restraints) Performing minimization step: 3647. Total energy = 848.3851 kcal/mol (846.2659 without restraints) Performing minimization step: 3648. Total energy = 848.3652 kcal/mol (846.2465 without restraints) Performing minimization step: 3649. Total energy = 848.3427 kcal/mol (846.2238 without restraints) Performing minimization step: 3650. Total energy = 848.3229 kcal/mol (846.2045 without restraints) Performing minimization step: 3651. Total energy = 848.3006 kcal/mol (846.1819 without restraints) Performing minimization step: 3652. Total energy = 848.2808 kcal/mol (846.1627 without restraints) Performing minimization step: 3653. Total energy = 848.2583 kcal/mol (846.1400 without restraints) Performing minimization step: 3654. Total energy = 848.2387 kcal/mol (846.1208 without restraints) Performing minimization step: 3655. Total energy = 848.2165 kcal/mol (846.0984 without restraints) Performing minimization step: 3656. Total energy = 848.1970 kcal/mol (846.0794 without restraints) Performing minimization step: 3657. Total energy = 848.1749 kcal/mol (846.0571 without restraints) Performing minimization step: 3658. Total energy = 848.1554 kcal/mol (846.0381 without restraints) Performing minimization step: 3659. Total energy = 848.1334 kcal/mol (846.0159 without restraints) Performing minimization step: 3660. Total energy = 848.1141 kcal/mol (845.9973 without restraints) Performing minimization step: 3661. Total energy = 848.0923 kcal/mol (845.9751 without restraints) Performing minimization step: 3662. Total energy = 848.0730 kcal/mol (845.9563 without restraints) Performing minimization step: 3663. Total energy = 848.0511 kcal/mol (845.9341 without restraints) Performing minimization step: 3664. Total energy = 848.0318 kcal/mol (845.9153 without restraints) Performing minimization step: 3665. Total energy = 848.0100 kcal/mol (845.8935 without restraints) Performing minimization step: 3666. Total energy = 847.9907 kcal/mol (845.8746 without restraints) Performing minimization step: 3667. Total energy = 847.9692 kcal/mol (845.8528 without restraints) Performing minimization step: 3668. Total energy = 847.9498 kcal/mol (845.8340 without restraints) Performing minimization step: 3669. Total energy = 847.9284 kcal/mol (845.8122 without restraints) Performing minimization step: 3670. Total energy = 847.9092 kcal/mol (845.7935 without restraints) Performing minimization step: 3671. Total energy = 847.8877 kcal/mol (845.7718 without restraints) Performing minimization step: 3672. Total energy = 847.8687 kcal/mol (845.7534 without restraints) Performing minimization step: 3673. Total energy = 847.8471 kcal/mol (845.7315 without restraints) Performing minimization step: 3674. Total energy = 847.8282 kcal/mol (845.7132 without restraints) Performing minimization step: 3675. Total energy = 847.8069 kcal/mol (845.6916 without restraints) Performing minimization step: 3676. Total energy = 847.7881 kcal/mol (845.6733 without restraints) Performing minimization step: 3677. Total energy = 847.7667 kcal/mol (845.6516 without restraints) Performing minimization step: 3678. Total energy = 847.7479 kcal/mol (845.6334 without restraints) Performing minimization step: 3679. Total energy = 847.7268 kcal/mol (845.6121 without restraints) Performing minimization step: 3680. Total energy = 847.7083 kcal/mol (845.5940 without restraints) Performing minimization step: 3681. Total energy = 847.6871 kcal/mol (845.5726 without restraints) Performing minimization step: 3682. Total energy = 847.6686 kcal/mol (845.5545 without restraints) Performing minimization step: 3683. Total energy = 847.6474 kcal/mol (845.5330 without restraints) Performing minimization step: 3684. Total energy = 847.6289 kcal/mol (845.5151 without restraints) Performing minimization step: 3685. Total energy = 847.6079 kcal/mol (845.4938 without restraints) Performing minimization step: 3686. Total energy = 847.5896 kcal/mol (845.4761 without restraints) Performing minimization step: 3687. Total energy = 847.5686 kcal/mol (845.4548 without restraints) Performing minimization step: 3688. Total energy = 847.5504 kcal/mol (845.4372 without restraints) Performing minimization step: 3689. Total energy = 847.5297 kcal/mol (845.4161 without restraints) Performing minimization step: 3690. Total energy = 847.5116 kcal/mol (845.3986 without restraints) Performing minimization step: 3691. Total energy = 847.4905 kcal/mol (845.3772 without restraints) Performing minimization step: 3692. Total energy = 847.4725 kcal/mol (845.3597 without restraints) Performing minimization step: 3693. Total energy = 847.4516 kcal/mol (845.3385 without restraints) Performing minimization step: 3694. Total energy = 847.4340 kcal/mol (845.3214 without restraints) Performing minimization step: 3695. Total energy = 847.4131 kcal/mol (845.3002 without restraints) Performing minimization step: 3696. Total energy = 847.3953 kcal/mol (845.2831 without restraints) Performing minimization step: 3697. Total energy = 847.3746 kcal/mol (845.2620 without restraints) Performing minimization step: 3698. Total energy = 847.3566 kcal/mol (845.2445 without restraints) Performing minimization step: 3699. Total energy = 847.3359 kcal/mol (845.2235 without restraints) Performing minimization step: 3700. Total energy = 847.3181 kcal/mol (845.2064 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 847.2980 kcal/mol (845.1859 without restraints) Performing minimization step: 3702. Total energy = 847.2800 kcal/mol (845.1683 without restraints) Performing minimization step: 3703. Total energy = 847.2595 kcal/mol (845.1477 without restraints) Performing minimization step: 3704. Total energy = 847.2417 kcal/mol (845.1302 without restraints) Performing minimization step: 3705. Total energy = 847.2214 kcal/mol (845.1096 without restraints) Performing minimization step: 3706. Total energy = 847.2034 kcal/mol (845.0922 without restraints) Performing minimization step: 3707. Total energy = 847.1832 kcal/mol (845.0717 without restraints) Performing minimization step: 3708. Total energy = 847.1653 kcal/mol (845.0544 without restraints) Performing minimization step: 3709. Total energy = 847.1452 kcal/mol (845.0339 without restraints) Performing minimization step: 3710. Total energy = 847.1274 kcal/mol (845.0166 without restraints) Performing minimization step: 3711. Total energy = 847.1073 kcal/mol (844.9962 without restraints) Performing minimization step: 3712. Total energy = 847.0898 kcal/mol (844.9793 without restraints) Performing minimization step: 3713. Total energy = 847.0698 kcal/mol (844.9589 without restraints) Performing minimization step: 3714. Total energy = 847.0522 kcal/mol (844.9418 without restraints) Performing minimization step: 3715. Total energy = 847.0324 kcal/mol (844.9218 without restraints) Performing minimization step: 3716. Total energy = 847.0150 kcal/mol (844.9048 without restraints) Performing minimization step: 3717. Total energy = 846.9950 kcal/mol (844.8846 without restraints) Performing minimization step: 3718. Total energy = 846.9777 kcal/mol (844.8678 without restraints) Performing minimization step: 3719. Total energy = 846.9578 kcal/mol (844.8476 without restraints) Performing minimization step: 3720. Total energy = 846.9406 kcal/mol (844.8309 without restraints) Performing minimization step: 3721. Total energy = 846.9206 kcal/mol (844.8107 without restraints) Performing minimization step: 3722. Total energy = 846.9036 kcal/mol (844.7941 without restraints) Performing minimization step: 3723. Total energy = 846.8837 kcal/mol (844.7739 without restraints) Performing minimization step: 3724. Total energy = 846.8667 kcal/mol (844.7574 without restraints) Performing minimization step: 3725. Total energy = 846.8468 kcal/mol (844.7372 without restraints) Performing minimization step: 3726. Total energy = 846.8298 kcal/mol (844.7207 without restraints) Performing minimization step: 3727. Total energy = 846.8102 kcal/mol (844.7008 without restraints) Performing minimization step: 3728. Total energy = 846.7933 kcal/mol (844.6844 without restraints) Performing minimization step: 3729. Total energy = 846.7735 kcal/mol (844.6643 without restraints) Performing minimization step: 3730. Total energy = 846.7566 kcal/mol (844.6480 without restraints) Performing minimization step: 3731. Total energy = 846.7369 kcal/mol (844.6279 without restraints) Performing minimization step: 3732. Total energy = 846.7201 kcal/mol (844.6117 without restraints) Performing minimization step: 3733. Total energy = 846.7005 kcal/mol (844.5917 without restraints) Performing minimization step: 3734. Total energy = 846.6837 kcal/mol (844.5754 without restraints) Performing minimization step: 3735. Total energy = 846.6643 kcal/mol (844.5557 without restraints) Performing minimization step: 3736. Total energy = 846.6476 kcal/mol (844.5395 without restraints) Performing minimization step: 3737. Total energy = 846.6281 kcal/mol (844.5196 without restraints) Performing minimization step: 3738. Total energy = 846.6115 kcal/mol (844.5036 without restraints) Performing minimization step: 3739. Total energy = 846.5919 kcal/mol (844.4836 without restraints) Performing minimization step: 3740. Total energy = 846.5758 kcal/mol (844.4681 without restraints) Performing minimization step: 3741. Total energy = 846.5564 kcal/mol (844.4483 without restraints) Performing minimization step: 3742. Total energy = 846.5399 kcal/mol (844.4324 without restraints) Performing minimization step: 3743. Total energy = 846.5209 kcal/mol (844.4132 without restraints) Performing minimization step: 3744. Total energy = 846.5046 kcal/mol (844.3973 without restraints) Performing minimization step: 3745. Total energy = 846.4855 kcal/mol (844.3778 without restraints) Performing minimization step: 3746. Total energy = 846.4692 kcal/mol (844.3620 without restraints) Performing minimization step: 3747. Total energy = 846.4499 kcal/mol (844.3424 without restraints) Performing minimization step: 3748. Total energy = 846.4337 kcal/mol (844.3267 without restraints) Performing minimization step: 3749. Total energy = 846.4145 kcal/mol (844.3071 without restraints) Performing minimization step: 3750. Total energy = 846.3983 kcal/mol (844.2915 without restraints) Performing minimization step: 3751. Total energy = 846.3790 kcal/mol (844.2718 without restraints) Performing minimization step: 3752. Total energy = 846.3628 kcal/mol (844.2562 without restraints) Performing minimization step: 3753. Total energy = 846.3444 kcal/mol (844.2375 without restraints) Performing minimization step: 3754. Total energy = 846.3284 kcal/mol (844.2220 without restraints) Performing minimization step: 3755. Total energy = 846.3094 kcal/mol (844.2026 without restraints) Performing minimization step: 3756. Total energy = 846.2938 kcal/mol (844.1875 without restraints) Performing minimization step: 3757. Total energy = 846.2748 kcal/mol (844.1681 without restraints) Performing minimization step: 3758. Total energy = 846.2589 kcal/mol (844.1528 without restraints) Performing minimization step: 3759. Total energy = 846.2398 kcal/mol (844.1333 without restraints) Performing minimization step: 3760. Total energy = 846.2239 kcal/mol (844.1180 without restraints) Performing minimization step: 3761. Total energy = 846.2050 kcal/mol (844.0988 without restraints) Performing minimization step: 3762. Total energy = 846.1892 kcal/mol (844.0835 without restraints) Performing minimization step: 3763. Total energy = 846.1704 kcal/mol (844.0643 without restraints) Performing minimization step: 3764. Total energy = 846.1547 kcal/mol (844.0491 without restraints) Performing minimization step: 3765. Total energy = 846.1359 kcal/mol (844.0299 without restraints) Performing minimization step: 3766. Total energy = 846.1202 kcal/mol (844.0148 without restraints) Performing minimization step: 3767. Total energy = 846.1015 kcal/mol (843.9957 without restraints) Performing minimization step: 3768. Total energy = 846.0859 kcal/mol (843.9806 without restraints) Performing minimization step: 3769. Total energy = 846.0672 kcal/mol (843.9615 without restraints) Performing minimization step: 3770. Total energy = 846.0516 kcal/mol (843.9465 without restraints) Performing minimization step: 3771. Total energy = 846.0330 kcal/mol (843.9275 without restraints) Performing minimization step: 3772. Total energy = 846.0175 kcal/mol (843.9125 without restraints) Performing minimization step: 3773. Total energy = 845.9989 kcal/mol (843.8936 without restraints) Performing minimization step: 3774. Total energy = 845.9837 kcal/mol (843.8789 without restraints) Performing minimization step: 3775. Total energy = 845.9652 kcal/mol (843.8600 without restraints) Performing minimization step: 3776. Total energy = 845.9500 kcal/mol (843.8454 without restraints) Performing minimization step: 3777. Total energy = 845.9316 kcal/mol (843.8265 without restraints) Performing minimization step: 3778. Total energy = 845.9162 kcal/mol (843.8117 without restraints) Performing minimization step: 3779. Total energy = 845.8978 kcal/mol (843.7929 without restraints) Performing minimization step: 3780. Total energy = 845.8826 kcal/mol (843.7782 without restraints) Performing minimization step: 3781. Total energy = 845.8645 kcal/mol (843.7597 without restraints) Performing minimization step: 3782. Total energy = 845.8492 kcal/mol (843.7450 without restraints) Performing minimization step: 3783. Total energy = 845.8309 kcal/mol (843.7263 without restraints) Performing minimization step: 3784. Total energy = 845.8157 kcal/mol (843.7117 without restraints) Performing minimization step: 3785. Total energy = 845.7973 kcal/mol (843.6928 without restraints) Performing minimization step: 3786. Total energy = 845.7824 kcal/mol (843.6785 without restraints) Performing minimization step: 3787. Total energy = 845.7640 kcal/mol (843.6597 without restraints) Performing minimization step: 3788. Total energy = 845.7491 kcal/mol (843.6453 without restraints) Performing minimization step: 3789. Total energy = 845.7308 kcal/mol (843.6265 without restraints) Performing minimization step: 3790. Total energy = 845.7160 kcal/mol (843.6123 without restraints) Performing minimization step: 3791. Total energy = 845.6979 kcal/mol (843.5938 without restraints) Performing minimization step: 3792. Total energy = 845.6829 kcal/mol (843.5794 without restraints) Performing minimization step: 3793. Total energy = 845.6649 kcal/mol (843.5610 without restraints) Performing minimization step: 3794. Total energy = 845.6499 kcal/mol (843.5463 without restraints) Performing minimization step: 3795. Total energy = 845.6320 kcal/mol (843.5282 without restraints) Performing minimization step: 3796. Total energy = 845.6171 kcal/mol (843.5138 without restraints) Performing minimization step: 3797. Total energy = 845.5992 kcal/mol (843.4957 without restraints) Performing minimization step: 3798. Total energy = 845.5843 kcal/mol (843.4812 without restraints) Performing minimization step: 3799. Total energy = 845.5664 kcal/mol (843.4629 without restraints) Performing minimization step: 3800. Total energy = 845.5517 kcal/mol (843.4487 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 845.5340 kcal/mol (843.4306 without restraints) Performing minimization step: 3802. Total energy = 845.5193 kcal/mol (843.4164 without restraints) Performing minimization step: 3803. Total energy = 845.5015 kcal/mol (843.3982 without restraints) Performing minimization step: 3804. Total energy = 845.4869 kcal/mol (843.3841 without restraints) Performing minimization step: 3805. Total energy = 845.4691 kcal/mol (843.3659 without restraints) Performing minimization step: 3806. Total energy = 845.4545 kcal/mol (843.3519 without restraints) Performing minimization step: 3807. Total energy = 845.4367 kcal/mol (843.3337 without restraints) Performing minimization step: 3808. Total energy = 845.4225 kcal/mol (843.3200 without restraints) Performing minimization step: 3809. Total energy = 845.4047 kcal/mol (843.3017 without restraints) Performing minimization step: 3810. Total energy = 845.3901 kcal/mol (843.2878 without restraints) Performing minimization step: 3811. Total energy = 845.3725 kcal/mol (843.2697 without restraints) Performing minimization step: 3812. Total energy = 845.3580 kcal/mol (843.2558 without restraints) Performing minimization step: 3813. Total energy = 845.3405 kcal/mol (843.2379 without restraints) Performing minimization step: 3814. Total energy = 845.3263 kcal/mol (843.2241 without restraints) Performing minimization step: 3815. Total energy = 845.3087 kcal/mol (843.2061 without restraints) Performing minimization step: 3816. Total energy = 845.2944 kcal/mol (843.1924 without restraints) Performing minimization step: 3817. Total energy = 845.2768 kcal/mol (843.1744 without restraints) Performing minimization step: 3818. Total energy = 845.2624 kcal/mol (843.1603 without restraints) Performing minimization step: 3819. Total energy = 845.2447 kcal/mol (843.1424 without restraints) Performing minimization step: 3820. Total energy = 845.2305 kcal/mol (843.1287 without restraints) Performing minimization step: 3821. Total energy = 845.2131 kcal/mol (843.1109 without restraints) Performing minimization step: 3822. Total energy = 845.1990 kcal/mol (843.0975 without restraints) Performing minimization step: 3823. Total energy = 845.1817 kcal/mol (843.0796 without restraints) Performing minimization step: 3824. Total energy = 845.1677 kcal/mol (843.0663 without restraints) Performing minimization step: 3825. Total energy = 845.1503 kcal/mol (843.0483 without restraints) Performing minimization step: 3826. Total energy = 845.1364 kcal/mol (843.0349 without restraints) Performing minimization step: 3827. Total energy = 845.1188 kcal/mol (843.0169 without restraints) Performing minimization step: 3828. Total energy = 845.1050 kcal/mol (843.0037 without restraints) Performing minimization step: 3829. Total energy = 845.0875 kcal/mol (842.9857 without restraints) Performing minimization step: 3830. Total energy = 845.0738 kcal/mol (842.9725 without restraints) Performing minimization step: 3831. Total energy = 845.0565 kcal/mol (842.9547 without restraints) Performing minimization step: 3832. Total energy = 845.0427 kcal/mol (842.9415 without restraints) Performing minimization step: 3833. Total energy = 845.0258 kcal/mol (842.9241 without restraints) Performing minimization step: 3834. Total energy = 845.0120 kcal/mol (842.9110 without restraints) Performing minimization step: 3835. Total energy = 844.9946 kcal/mol (842.8932 without restraints) Performing minimization step: 3836. Total energy = 844.9808 kcal/mol (842.8799 without restraints) Performing minimization step: 3837. Total energy = 844.9638 kcal/mol (842.8625 without restraints) Performing minimization step: 3838. Total energy = 844.9502 kcal/mol (842.8493 without restraints) Performing minimization step: 3839. Total energy = 844.9333 kcal/mol (842.8321 without restraints) Performing minimization step: 3840. Total energy = 844.9194 kcal/mol (842.8187 without restraints) Performing minimization step: 3841. Total energy = 844.9028 kcal/mol (842.8016 without restraints) Performing minimization step: 3842. Total energy = 844.8891 kcal/mol (842.7885 without restraints) Performing minimization step: 3843. Total energy = 844.8725 kcal/mol (842.7715 without restraints) Performing minimization step: 3844. Total energy = 844.8587 kcal/mol (842.7582 without restraints) Performing minimization step: 3845. Total energy = 844.8419 kcal/mol (842.7409 without restraints) Performing minimization step: 3846. Total energy = 844.8281 kcal/mol (842.7277 without restraints) Performing minimization step: 3847. Total energy = 844.8114 kcal/mol (842.7105 without restraints) Performing minimization step: 3848. Total energy = 844.7974 kcal/mol (842.6970 without restraints) Performing minimization step: 3849. Total energy = 844.7805 kcal/mol (842.6796 without restraints) Performing minimization step: 3850. Total energy = 844.7672 kcal/mol (842.6668 without restraints) Performing minimization step: 3851. Total energy = 844.7505 kcal/mol (842.6497 without restraints) Performing minimization step: 3852. Total energy = 844.7368 kcal/mol (842.6366 without restraints) Performing minimization step: 3853. Total energy = 844.7202 kcal/mol (842.6196 without restraints) Performing minimization step: 3854. Total energy = 844.7068 kcal/mol (842.6067 without restraints) Performing minimization step: 3855. Total energy = 844.6900 kcal/mol (842.5894 without restraints) Performing minimization step: 3856. Total energy = 844.6766 kcal/mol (842.5765 without restraints) Performing minimization step: 3857. Total energy = 844.6597 kcal/mol (842.5591 without restraints) Performing minimization step: 3858. Total energy = 844.6462 kcal/mol (842.5463 without restraints) Performing minimization step: 3859. Total energy = 844.6295 kcal/mol (842.5291 without restraints) Performing minimization step: 3860. Total energy = 844.6162 kcal/mol (842.5164 without restraints) Performing minimization step: 3861. Total energy = 844.5996 kcal/mol (842.4993 without restraints) Performing minimization step: 3862. Total energy = 844.5863 kcal/mol (842.4866 without restraints) Performing minimization step: 3863. Total energy = 844.5706 kcal/mol (842.4704 without restraints) Performing minimization step: 3864. Total energy = 844.5574 kcal/mol (842.4577 without restraints) Performing minimization step: 3865. Total energy = 844.5408 kcal/mol (842.4406 without restraints) Performing minimization step: 3866. Total energy = 844.5276 kcal/mol (842.4280 without restraints) Performing minimization step: 3867. Total energy = 844.5110 kcal/mol (842.4109 without restraints) Performing minimization step: 3868. Total energy = 844.4979 kcal/mol (842.3983 without restraints) Performing minimization step: 3869. Total energy = 844.4813 kcal/mol (842.3813 without restraints) Performing minimization step: 3870. Total energy = 844.4680 kcal/mol (842.3685 without restraints) Performing minimization step: 3871. Total energy = 844.4516 kcal/mol (842.3518 without restraints) Performing minimization step: 3872. Total energy = 844.4384 kcal/mol (842.3390 without restraints) Performing minimization step: 3873. Total energy = 844.4220 kcal/mol (842.3221 without restraints) Performing minimization step: 3874. Total energy = 844.4090 kcal/mol (842.3096 without restraints) Performing minimization step: 3875. Total energy = 844.3925 kcal/mol (842.2927 without restraints) Performing minimization step: 3876. Total energy = 844.3797 kcal/mol (842.2805 without restraints) Performing minimization step: 3877. Total energy = 844.3634 kcal/mol (842.2636 without restraints) Performing minimization step: 3878. Total energy = 844.3504 kcal/mol (842.2512 without restraints) Performing minimization step: 3879. Total energy = 844.3340 kcal/mol (842.2343 without restraints) Performing minimization step: 3880. Total energy = 844.3211 kcal/mol (842.2220 without restraints) Performing minimization step: 3881. Total energy = 844.3048 kcal/mol (842.2052 without restraints) Performing minimization step: 3882. Total energy = 844.2919 kcal/mol (842.1928 without restraints) Performing minimization step: 3883. Total energy = 844.2758 kcal/mol (842.1762 without restraints) Performing minimization step: 3884. Total energy = 844.2629 kcal/mol (842.1639 without restraints) Performing minimization step: 3885. Total energy = 844.2466 kcal/mol (842.1471 without restraints) Performing minimization step: 3886. Total energy = 844.2338 kcal/mol (842.1349 without restraints) Performing minimization step: 3887. Total energy = 844.2175 kcal/mol (842.1181 without restraints) Performing minimization step: 3888. Total energy = 844.2047 kcal/mol (842.1059 without restraints) Performing minimization step: 3889. Total energy = 844.1885 kcal/mol (842.0892 without restraints) Performing minimization step: 3890. Total energy = 844.1757 kcal/mol (842.0769 without restraints) Performing minimization step: 3891. Total energy = 844.1597 kcal/mol (842.0604 without restraints) Performing minimization step: 3892. Total energy = 844.1470 kcal/mol (842.0482 without restraints) Performing minimization step: 3893. Total energy = 844.1308 kcal/mol (842.0316 without restraints) Performing minimization step: 3894. Total energy = 844.1181 kcal/mol (842.0194 without restraints) Performing minimization step: 3895. Total energy = 844.1020 kcal/mol (842.0028 without restraints) Performing minimization step: 3896. Total energy = 844.0894 kcal/mol (841.9908 without restraints) Performing minimization step: 3897. Total energy = 844.0733 kcal/mol (841.9742 without restraints) Performing minimization step: 3898. Total energy = 844.0607 kcal/mol (841.9621 without restraints) Performing minimization step: 3899. Total energy = 844.0446 kcal/mol (841.9455 without restraints) Performing minimization step: 3900. Total energy = 844.0320 kcal/mol (841.9335 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 844.0160 kcal/mol (841.9169 without restraints) Performing minimization step: 3902. Total energy = 844.0036 kcal/mol (841.9052 without restraints) Performing minimization step: 3903. Total energy = 843.9876 kcal/mol (841.8887 without restraints) Performing minimization step: 3904. Total energy = 843.9751 kcal/mol (841.8767 without restraints) Performing minimization step: 3905. Total energy = 843.9591 kcal/mol (841.8602 without restraints) Performing minimization step: 3906. Total energy = 843.9466 kcal/mol (841.8483 without restraints) Performing minimization step: 3907. Total energy = 843.9307 kcal/mol (841.8318 without restraints) Performing minimization step: 3908. Total energy = 843.9182 kcal/mol (841.8199 without restraints) Performing minimization step: 3909. Total energy = 843.9025 kcal/mol (841.8037 without restraints) Performing minimization step: 3910. Total energy = 843.8901 kcal/mol (841.7918 without restraints) Performing minimization step: 3911. Total energy = 843.8740 kcal/mol (841.7752 without restraints) Performing minimization step: 3912. Total energy = 843.8616 kcal/mol (841.7634 without restraints) Performing minimization step: 3913. Total energy = 843.8457 kcal/mol (841.7470 without restraints) Performing minimization step: 3914. Total energy = 843.8334 kcal/mol (841.7352 without restraints) Performing minimization step: 3915. Total energy = 843.8175 kcal/mol (841.7188 without restraints) Performing minimization step: 3916. Total energy = 843.8052 kcal/mol (841.7070 without restraints) Performing minimization step: 3917. Total energy = 843.7894 kcal/mol (841.6907 without restraints) Performing minimization step: 3918. Total energy = 843.7771 kcal/mol (841.6790 without restraints) Performing minimization step: 3919. Total energy = 843.7613 kcal/mol (841.6627 without restraints) Performing minimization step: 3920. Total energy = 843.7491 kcal/mol (841.6512 without restraints) Performing minimization step: 3921. Total energy = 843.7333 kcal/mol (841.6347 without restraints) Performing minimization step: 3922. Total energy = 843.7211 kcal/mol (841.6232 without restraints) Performing minimization step: 3923. Total energy = 843.7053 kcal/mol (841.6068 without restraints) Performing minimization step: 3924. Total energy = 843.6932 kcal/mol (841.5953 without restraints) Performing minimization step: 3925. Total energy = 843.6773 kcal/mol (841.5789 without restraints) Performing minimization step: 3926. Total energy = 843.6652 kcal/mol (841.5674 without restraints) Performing minimization step: 3927. Total energy = 843.6494 kcal/mol (841.5510 without restraints) Performing minimization step: 3928. Total energy = 843.6374 kcal/mol (841.5396 without restraints) Performing minimization step: 3929. Total energy = 843.6216 kcal/mol (841.5233 without restraints) Performing minimization step: 3930. Total energy = 843.6097 kcal/mol (841.5119 without restraints) Performing minimization step: 3931. Total energy = 843.5941 kcal/mol (841.4958 without restraints) Performing minimization step: 3932. Total energy = 843.5824 kcal/mol (841.4846 without restraints) Performing minimization step: 3933. Total energy = 843.5664 kcal/mol (841.4681 without restraints) Performing minimization step: 3934. Total energy = 843.5547 kcal/mol (841.4570 without restraints) Performing minimization step: 3935. Total energy = 843.5391 kcal/mol (841.4409 without restraints) Performing minimization step: 3936. Total energy = 843.5271 kcal/mol (841.4294 without restraints) Performing minimization step: 3937. Total energy = 843.5115 kcal/mol (841.4133 without restraints) Performing minimization step: 3938. Total energy = 843.4998 kcal/mol (841.4020 without restraints) Performing minimization step: 3939. Total energy = 843.4840 kcal/mol (841.3858 without restraints) Performing minimization step: 3940. Total energy = 843.4722 kcal/mol (841.3745 without restraints) Performing minimization step: 3941. Total energy = 843.4565 kcal/mol (841.3583 without restraints) Performing minimization step: 3942. Total energy = 843.4448 kcal/mol (841.3471 without restraints) Performing minimization step: 3943. Total energy = 843.4293 kcal/mol (841.3311 without restraints) Performing minimization step: 3944. Total energy = 843.4177 kcal/mol (841.3201 without restraints) Performing minimization step: 3945. Total energy = 843.4023 kcal/mol (841.3041 without restraints) Performing minimization step: 3946. Total energy = 843.3906 kcal/mol (841.2930 without restraints) Performing minimization step: 3947. Total energy = 843.3749 kcal/mol (841.2768 without restraints) Performing minimization step: 3948. Total energy = 843.3635 kcal/mol (841.2659 without restraints) Performing minimization step: 3949. Total energy = 843.3478 kcal/mol (841.2498 without restraints) Performing minimization step: 3950. Total energy = 843.3364 kcal/mol (841.2389 without restraints) Performing minimization step: 3951. Total energy = 843.3209 kcal/mol (841.2228 without restraints) Performing minimization step: 3952. Total energy = 843.3096 kcal/mol (841.2121 without restraints) Performing minimization step: 3953. Total energy = 843.2941 kcal/mol (841.1960 without restraints) Performing minimization step: 3954. Total energy = 843.2824 kcal/mol (841.1850 without restraints) Performing minimization step: 3955. Total energy = 843.2668 kcal/mol (841.1687 without restraints) Performing minimization step: 3956. Total energy = 843.2552 kcal/mol (841.1577 without restraints) Performing minimization step: 3957. Total energy = 843.2400 kcal/mol (841.1421 without restraints) Performing minimization step: 3958. Total energy = 843.2283 kcal/mol (841.1308 without restraints) Performing minimization step: 3959. Total energy = 843.2129 kcal/mol (841.1148 without restraints) Performing minimization step: 3960. Total energy = 843.2013 kcal/mol (841.1039 without restraints) Performing minimization step: 3961. Total energy = 843.1860 kcal/mol (841.0881 without restraints) Performing minimization step: 3962. Total energy = 843.1744 kcal/mol (841.0770 without restraints) Performing minimization step: 3963. Total energy = 843.1591 kcal/mol (841.0612 without restraints) Performing minimization step: 3964. Total energy = 843.1475 kcal/mol (841.0501 without restraints) Performing minimization step: 3965. Total energy = 843.1322 kcal/mol (841.0343 without restraints) Performing minimization step: 3966. Total energy = 843.1206 kcal/mol (841.0233 without restraints) Performing minimization step: 3967. Total energy = 843.1056 kcal/mol (841.0078 without restraints) Performing minimization step: 3968. Total energy = 843.0941 kcal/mol (840.9968 without restraints) Performing minimization step: 3969. Total energy = 843.0790 kcal/mol (840.9811 without restraints) Performing minimization step: 3970. Total energy = 843.0674 kcal/mol (840.9700 without restraints) Performing minimization step: 3971. Total energy = 843.0523 kcal/mol (840.9544 without restraints) Performing minimization step: 3972. Total energy = 843.0407 kcal/mol (840.9434 without restraints) Performing minimization step: 3973. Total energy = 843.0256 kcal/mol (840.9278 without restraints) Performing minimization step: 3974. Total energy = 843.0140 kcal/mol (840.9168 without restraints) Performing minimization step: 3975. Total energy = 842.9990 kcal/mol (840.9012 without restraints) Performing minimization step: 3976. Total energy = 842.9875 kcal/mol (840.8902 without restraints) Performing minimization step: 3977. Total energy = 842.9725 kcal/mol (840.8748 without restraints) Performing minimization step: 3978. Total energy = 842.9612 kcal/mol (840.8639 without restraints) Performing minimization step: 3979. Total energy = 842.9461 kcal/mol (840.8483 without restraints) Performing minimization step: 3980. Total energy = 842.9347 kcal/mol (840.8375 without restraints) Performing minimization step: 3981. Total energy = 842.9197 kcal/mol (840.8219 without restraints) Performing minimization step: 3982. Total energy = 842.9083 kcal/mol (840.8110 without restraints) Performing minimization step: 3983. Total energy = 842.8931 kcal/mol (840.7953 without restraints) Performing minimization step: 3984. Total energy = 842.8819 kcal/mol (840.7847 without restraints) Performing minimization step: 3985. Total energy = 842.8667 kcal/mol (840.7689 without restraints) Performing minimization step: 3986. Total energy = 842.8553 kcal/mol (840.7581 without restraints) Performing minimization step: 3987. Total energy = 842.8403 kcal/mol (840.7426 without restraints) Performing minimization step: 3988. Total energy = 842.8287 kcal/mol (840.7315 without restraints) Performing minimization step: 3989. Total energy = 842.8138 kcal/mol (840.7160 without restraints) Performing minimization step: 3990. Total energy = 842.8028 kcal/mol (840.7056 without restraints) Performing minimization step: 3991. Total energy = 842.7879 kcal/mol (840.6901 without restraints) Performing minimization step: 3992. Total energy = 842.7766 kcal/mol (840.6794 without restraints) Performing minimization step: 3993. Total energy = 842.7617 kcal/mol (840.6640 without restraints) Performing minimization step: 3994. Total energy = 842.7505 kcal/mol (840.6533 without restraints) Performing minimization step: 3995. Total energy = 842.7356 kcal/mol (840.6379 without restraints) Performing minimization step: 3996. Total energy = 842.7245 kcal/mol (840.6273 without restraints) Performing minimization step: 3997. Total energy = 842.7097 kcal/mol (840.6120 without restraints) Performing minimization step: 3998. Total energy = 842.6985 kcal/mol (840.6013 without restraints) Performing minimization step: 3999. Total energy = 842.6838 kcal/mol (840.5862 without restraints) Performing minimization step: 4000. Total energy = 842.6728 kcal/mol (840.5756 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 842.6579 kcal/mol (840.5602 without restraints) Performing minimization step: 4002. Total energy = 842.6468 kcal/mol (840.5496 without restraints) Performing minimization step: 4003. Total energy = 842.6322 kcal/mol (840.5345 without restraints) Performing minimization step: 4004. Total energy = 842.6212 kcal/mol (840.5240 without restraints) Performing minimization step: 4005. Total energy = 842.6064 kcal/mol (840.5086 without restraints) Performing minimization step: 4006. Total energy = 842.5953 kcal/mol (840.4981 without restraints) Performing minimization step: 4007. Total energy = 842.5806 kcal/mol (840.4828 without restraints) Performing minimization step: 4008. Total energy = 842.5695 kcal/mol (840.4723 without restraints) Performing minimization step: 4009. Total energy = 842.5548 kcal/mol (840.4571 without restraints) Performing minimization step: 4010. Total energy = 842.5438 kcal/mol (840.4466 without restraints) Performing minimization step: 4011. Total energy = 842.5291 kcal/mol (840.4313 without restraints) Performing minimization step: 4012. Total energy = 842.5179 kcal/mol (840.4207 without restraints) Performing minimization step: 4013. Total energy = 842.5032 kcal/mol (840.4054 without restraints) Performing minimization step: 4014. Total energy = 842.4923 kcal/mol (840.3951 without restraints) Performing minimization step: 4015. Total energy = 842.4777 kcal/mol (840.3801 without restraints) Performing minimization step: 4016. Total energy = 842.4667 kcal/mol (840.3695 without restraints) Performing minimization step: 4017. Total energy = 842.4522 kcal/mol (840.3545 without restraints) Performing minimization step: 4018. Total energy = 842.4412 kcal/mol (840.3440 without restraints) Performing minimization step: 4019. Total energy = 842.4267 kcal/mol (840.3288 without restraints) Performing minimization step: 4020. Total energy = 842.4157 kcal/mol (840.3185 without restraints) Performing minimization step: 4021. Total energy = 842.4012 kcal/mol (840.3034 without restraints) Performing minimization step: 4022. Total energy = 842.3905 kcal/mol (840.2933 without restraints) Performing minimization step: 4023. Total energy = 842.3765 kcal/mol (840.2788 without restraints) Performing minimization step: 4024. Total energy = 842.3660 kcal/mol (840.2687 without restraints) Performing minimization step: 4025. Total energy = 842.3513 kcal/mol (840.2534 without restraints) Performing minimization step: 4026. Total energy = 842.3404 kcal/mol (840.2432 without restraints) Performing minimization step: 4027. Total energy = 842.3259 kcal/mol (840.2281 without restraints) Performing minimization step: 4028. Total energy = 842.3149 kcal/mol (840.2177 without restraints) Performing minimization step: 4029. Total energy = 842.3006 kcal/mol (840.2028 without restraints) Performing minimization step: 4030. Total energy = 842.2899 kcal/mol (840.1926 without restraints) Performing minimization step: 4031. Total energy = 842.2755 kcal/mol (840.1778 without restraints) Performing minimization step: 4032. Total energy = 842.2649 kcal/mol (840.1677 without restraints) Performing minimization step: 4033. Total energy = 842.2509 kcal/mol (840.1531 without restraints) Performing minimization step: 4034. Total energy = 842.2403 kcal/mol (840.1430 without restraints) Performing minimization step: 4035. Total energy = 842.2260 kcal/mol (840.1282 without restraints) Performing minimization step: 4036. Total energy = 842.2152 kcal/mol (840.1178 without restraints) Performing minimization step: 4037. Total energy = 842.2009 kcal/mol (840.1031 without restraints) Performing minimization step: 4038. Total energy = 842.1901 kcal/mol (840.0927 without restraints) Performing minimization step: 4039. Total energy = 842.1760 kcal/mol (840.0782 without restraints) Performing minimization step: 4040. Total energy = 842.1651 kcal/mol (840.0677 without restraints) Performing minimization step: 4041. Total energy = 842.1509 kcal/mol (840.0530 without restraints) Performing minimization step: 4042. Total energy = 842.1401 kcal/mol (840.0428 without restraints) Performing minimization step: 4043. Total energy = 842.1261 kcal/mol (840.0284 without restraints) Performing minimization step: 4044. Total energy = 842.1155 kcal/mol (840.0181 without restraints) Performing minimization step: 4045. Total energy = 842.1014 kcal/mol (840.0035 without restraints) Performing minimization step: 4046. Total energy = 842.0908 kcal/mol (839.9934 without restraints) Performing minimization step: 4047. Total energy = 842.0766 kcal/mol (839.9787 without restraints) Performing minimization step: 4048. Total energy = 842.0659 kcal/mol (839.9686 without restraints) Performing minimization step: 4049. Total energy = 842.0519 kcal/mol (839.9540 without restraints) Performing minimization step: 4050. Total energy = 842.0413 kcal/mol (839.9439 without restraints) Performing minimization step: 4051. Total energy = 842.0273 kcal/mol (839.9293 without restraints) Performing minimization step: 4052. Total energy = 842.0167 kcal/mol (839.9193 without restraints) Performing minimization step: 4053. Total energy = 842.0025 kcal/mol (839.9045 without restraints) Performing minimization step: 4054. Total energy = 841.9919 kcal/mol (839.8945 without restraints) Performing minimization step: 4055. Total energy = 841.9778 kcal/mol (839.8800 without restraints) Performing minimization step: 4056. Total energy = 841.9673 kcal/mol (839.8699 without restraints) Performing minimization step: 4057. Total energy = 841.9535 kcal/mol (839.8556 without restraints) Performing minimization step: 4058. Total energy = 841.9431 kcal/mol (839.8456 without restraints) Performing minimization step: 4059. Total energy = 841.9290 kcal/mol (839.8309 without restraints) Performing minimization step: 4060. Total energy = 841.9189 kcal/mol (839.8214 without restraints) Performing minimization step: 4061. Total energy = 841.9048 kcal/mol (839.8067 without restraints) Performing minimization step: 4062. Total energy = 841.8944 kcal/mol (839.7968 without restraints) Performing minimization step: 4063. Total energy = 841.8805 kcal/mol (839.7824 without restraints) Performing minimization step: 4064. Total energy = 841.8700 kcal/mol (839.7725 without restraints) Performing minimization step: 4065. Total energy = 841.8562 kcal/mol (839.7581 without restraints) Performing minimization step: 4066. Total energy = 841.8459 kcal/mol (839.7484 without restraints) Performing minimization step: 4067. Total energy = 841.8322 kcal/mol (839.7341 without restraints) Performing minimization step: 4068. Total energy = 841.8218 kcal/mol (839.7242 without restraints) Performing minimization step: 4069. Total energy = 841.8079 kcal/mol (839.7099 without restraints) Performing minimization step: 4070. Total energy = 841.7976 kcal/mol (839.7001 without restraints) Performing minimization step: 4071. Total energy = 841.7838 kcal/mol (839.6856 without restraints) Performing minimization step: 4072. Total energy = 841.7737 kcal/mol (839.6761 without restraints) Performing minimization step: 4073. Total energy = 841.7598 kcal/mol (839.6616 without restraints) Performing minimization step: 4074. Total energy = 841.7497 kcal/mol (839.6520 without restraints) Performing minimization step: 4075. Total energy = 841.7358 kcal/mol (839.6376 without restraints) Performing minimization step: 4076. Total energy = 841.7257 kcal/mol (839.6281 without restraints) Performing minimization step: 4077. Total energy = 841.7119 kcal/mol (839.6136 without restraints) Performing minimization step: 4078. Total energy = 841.7019 kcal/mol (839.6042 without restraints) Performing minimization step: 4079. Total energy = 841.6881 kcal/mol (839.5899 without restraints) Performing minimization step: 4080. Total energy = 841.6782 kcal/mol (839.5805 without restraints) Performing minimization step: 4081. Total energy = 841.6642 kcal/mol (839.5659 without restraints) Performing minimization step: 4082. Total energy = 841.6542 kcal/mol (839.5565 without restraints) Performing minimization step: 4083. Total energy = 841.6404 kcal/mol (839.5421 without restraints) Performing minimization step: 4084. Total energy = 841.6305 kcal/mol (839.5327 without restraints) Performing minimization step: 4085. Total energy = 841.6167 kcal/mol (839.5184 without restraints) Performing minimization step: 4086. Total energy = 841.6068 kcal/mol (839.5090 without restraints) Performing minimization step: 4087. Total energy = 841.5929 kcal/mol (839.4945 without restraints) Performing minimization step: 4088. Total energy = 841.5830 kcal/mol (839.4852 without restraints) Performing minimization step: 4089. Total energy = 841.5693 kcal/mol (839.4709 without restraints) Performing minimization step: 4090. Total energy = 841.5594 kcal/mol (839.4614 without restraints) Performing minimization step: 4091. Total energy = 841.5456 kcal/mol (839.4471 without restraints) Performing minimization step: 4092. Total energy = 841.5358 kcal/mol (839.4379 without restraints) Performing minimization step: 4093. Total energy = 841.5219 kcal/mol (839.4234 without restraints) Performing minimization step: 4094. Total energy = 841.5121 kcal/mol (839.4142 without restraints) Performing minimization step: 4095. Total energy = 841.4985 kcal/mol (839.3999 without restraints) Performing minimization step: 4096. Total energy = 841.4887 kcal/mol (839.3907 without restraints) Performing minimization step: 4097. Total energy = 841.4755 kcal/mol (839.3769 without restraints) Performing minimization step: 4098. Total energy = 841.4658 kcal/mol (839.3678 without restraints) Performing minimization step: 4099. Total energy = 841.4522 kcal/mol (839.3536 without restraints) Performing minimization step: 4100. Total energy = 841.4423 kcal/mol (839.3443 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 841.4288 kcal/mol (839.3301 without restraints) Performing minimization step: 4102. Total energy = 841.4191 kcal/mol (839.3210 without restraints) Performing minimization step: 4103. Total energy = 841.4056 kcal/mol (839.3069 without restraints) Performing minimization step: 4104. Total energy = 841.3958 kcal/mol (839.2976 without restraints) Performing minimization step: 4105. Total energy = 841.3823 kcal/mol (839.2836 without restraints) Performing minimization step: 4106. Total energy = 841.3727 kcal/mol (839.2745 without restraints) Performing minimization step: 4107. Total energy = 841.3592 kcal/mol (839.2605 without restraints) Performing minimization step: 4108. Total energy = 841.3497 kcal/mol (839.2515 without restraints) Performing minimization step: 4109. Total energy = 841.3362 kcal/mol (839.2374 without restraints) Performing minimization step: 4110. Total energy = 841.3265 kcal/mol (839.2282 without restraints) Performing minimization step: 4111. Total energy = 841.3133 kcal/mol (839.2144 without restraints) Performing minimization step: 4112. Total energy = 841.3038 kcal/mol (839.2055 without restraints) Performing minimization step: 4113. Total energy = 841.2903 kcal/mol (839.1913 without restraints) Performing minimization step: 4114. Total energy = 841.2809 kcal/mol (839.1826 without restraints) Performing minimization step: 4115. Total energy = 841.2678 kcal/mol (839.1688 without restraints) Performing minimization step: 4116. Total energy = 841.2583 kcal/mol (839.1599 without restraints) Performing minimization step: 4117. Total energy = 841.2448 kcal/mol (839.1457 without restraints) Performing minimization step: 4118. Total energy = 841.2353 kcal/mol (839.1369 without restraints) Performing minimization step: 4119. Total energy = 841.2222 kcal/mol (839.1232 without restraints) Performing minimization step: 4120. Total energy = 841.2130 kcal/mol (839.1146 without restraints) Performing minimization step: 4121. Total energy = 841.1998 kcal/mol (839.1007 without restraints) Performing minimization step: 4122. Total energy = 841.1904 kcal/mol (839.0919 without restraints) Performing minimization step: 4123. Total energy = 841.1775 kcal/mol (839.0785 without restraints) Performing minimization step: 4124. Total energy = 841.1681 kcal/mol (839.0696 without restraints) Performing minimization step: 4125. Total energy = 841.1551 kcal/mol (839.0559 without restraints) Performing minimization step: 4126. Total energy = 841.1466 kcal/mol (839.0480 without restraints) Performing minimization step: 4127. Total energy = 841.1334 kcal/mol (839.0342 without restraints) Performing minimization step: 4128. Total energy = 841.1242 kcal/mol (839.0255 without restraints) Performing minimization step: 4129. Total energy = 841.1110 kcal/mol (839.0117 without restraints) Performing minimization step: 4130. Total energy = 841.1018 kcal/mol (839.0031 without restraints) Performing minimization step: 4131. Total energy = 841.0887 kcal/mol (838.9894 without restraints) Performing minimization step: 4132. Total energy = 841.0795 kcal/mol (838.9808 without restraints) Performing minimization step: 4133. Total energy = 841.0666 kcal/mol (838.9673 without restraints) Performing minimization step: 4134. Total energy = 841.0575 kcal/mol (838.9587 without restraints) Performing minimization step: 4135. Total energy = 841.0443 kcal/mol (838.9450 without restraints) Performing minimization step: 4136. Total energy = 841.0353 kcal/mol (838.9365 without restraints) Performing minimization step: 4137. Total energy = 841.0223 kcal/mol (838.9228 without restraints) Performing minimization step: 4138. Total energy = 841.0132 kcal/mol (838.9143 without restraints) Performing minimization step: 4139. Total energy = 841.0002 kcal/mol (838.9007 without restraints) Performing minimization step: 4140. Total energy = 840.9914 kcal/mol (838.8924 without restraints) Performing minimization step: 4141. Total energy = 840.9784 kcal/mol (838.8788 without restraints) Performing minimization step: 4142. Total energy = 840.9694 kcal/mol (838.8704 without restraints) Performing minimization step: 4143. Total energy = 840.9563 kcal/mol (838.8566 without restraints) Performing minimization step: 4144. Total energy = 840.9473 kcal/mol (838.8482 without restraints) Performing minimization step: 4145. Total energy = 840.9343 kcal/mol (838.8347 without restraints) Performing minimization step: 4146. Total energy = 840.9254 kcal/mol (838.8263 without restraints) Performing minimization step: 4147. Total energy = 840.9127 kcal/mol (838.8130 without restraints) Performing minimization step: 4148. Total energy = 840.9038 kcal/mol (838.8046 without restraints) Performing minimization step: 4149. Total energy = 840.8908 kcal/mol (838.7910 without restraints) Performing minimization step: 4150. Total energy = 840.8819 kcal/mol (838.7827 without restraints) Performing minimization step: 4151. Total energy = 840.8689 kcal/mol (838.7689 without restraints) Performing minimization step: 4152. Total energy = 840.8599 kcal/mol (838.7607 without restraints) Performing minimization step: 4153. Total energy = 840.8471 kcal/mol (838.7472 without restraints) Performing minimization step: 4154. Total energy = 840.8384 kcal/mol (838.7390 without restraints) Performing minimization step: 4155. Total energy = 840.8257 kcal/mol (838.7257 without restraints) Performing minimization step: 4156. Total energy = 840.8169 kcal/mol (838.7175 without restraints) Performing minimization step: 4157. Total energy = 840.8040 kcal/mol (838.7040 without restraints) Performing minimization step: 4158. Total energy = 840.7953 kcal/mol (838.6958 without restraints) Performing minimization step: 4159. Total energy = 840.7825 kcal/mol (838.6825 without restraints) Performing minimization step: 4160. Total energy = 840.7739 kcal/mol (838.6744 without restraints) Performing minimization step: 4161. Total energy = 840.7614 kcal/mol (838.6612 without restraints) Performing minimization step: 4162. Total energy = 840.7528 kcal/mol (838.6532 without restraints) Performing minimization step: 4163. Total energy = 840.7403 kcal/mol (838.6401 without restraints) Performing minimization step: 4164. Total energy = 840.7317 kcal/mol (838.6321 without restraints) Performing minimization step: 4165. Total energy = 840.7191 kcal/mol (838.6188 without restraints) Performing minimization step: 4166. Total energy = 840.7105 kcal/mol (838.6108 without restraints) Performing minimization step: 4167. Total energy = 840.6979 kcal/mol (838.5976 without restraints) Performing minimization step: 4168. Total energy = 840.6896 kcal/mol (838.5898 without restraints) Performing minimization step: 4169. Total energy = 840.6770 kcal/mol (838.5766 without restraints) Performing minimization step: 4170. Total energy = 840.6685 kcal/mol (838.5686 without restraints) Performing minimization step: 4171. Total energy = 840.6559 kcal/mol (838.5555 without restraints) Performing minimization step: 4172. Total energy = 840.6474 kcal/mol (838.5475 without restraints) Performing minimization step: 4173. Total energy = 840.6349 kcal/mol (838.5344 without restraints) Performing minimization step: 4174. Total energy = 840.6266 kcal/mol (838.5267 without restraints) Performing minimization step: 4175. Total energy = 840.6142 kcal/mol (838.5136 without restraints) Performing minimization step: 4176. Total energy = 840.6058 kcal/mol (838.5058 without restraints) Performing minimization step: 4177. Total energy = 840.5934 kcal/mol (838.4927 without restraints) Performing minimization step: 4178. Total energy = 840.5850 kcal/mol (838.4849 without restraints) Performing minimization step: 4179. Total energy = 840.5726 kcal/mol (838.4719 without restraints) Performing minimization step: 4180. Total energy = 840.5642 kcal/mol (838.4641 without restraints) Performing minimization step: 4181. Total energy = 840.5518 kcal/mol (838.4510 without restraints) Performing minimization step: 4182. Total energy = 840.5435 kcal/mol (838.4433 without restraints) Performing minimization step: 4183. Total energy = 840.5313 kcal/mol (838.4305 without restraints) Performing minimization step: 4184. Total energy = 840.5229 kcal/mol (838.4226 without restraints) Performing minimization step: 4185. Total energy = 840.5105 kcal/mol (838.4096 without restraints) Performing minimization step: 4186. Total energy = 840.5022 kcal/mol (838.4018 without restraints) Performing minimization step: 4187. Total energy = 840.4900 kcal/mol (838.3890 without restraints) Performing minimization step: 4188. Total energy = 840.4818 kcal/mol (838.3813 without restraints) Performing minimization step: 4189. Total energy = 840.4695 kcal/mol (838.3684 without restraints) Performing minimization step: 4190. Total energy = 840.4613 kcal/mol (838.3608 without restraints) Performing minimization step: 4191. Total energy = 840.4491 kcal/mol (838.3479 without restraints) Performing minimization step: 4192. Total energy = 840.4409 kcal/mol (838.3404 without restraints) Performing minimization step: 4193. Total energy = 840.4287 kcal/mol (838.3275 without restraints) Performing minimization step: 4194. Total energy = 840.4208 kcal/mol (838.3202 without restraints) Performing minimization step: 4195. Total energy = 840.4086 kcal/mol (838.3073 without restraints) Performing minimization step: 4196. Total energy = 840.4005 kcal/mol (838.2998 without restraints) Performing minimization step: 4197. Total energy = 840.3884 kcal/mol (838.2870 without restraints) Performing minimization step: 4198. Total energy = 840.3803 kcal/mol (838.2795 without restraints) Performing minimization step: 4199. Total energy = 840.3682 kcal/mol (838.2668 without restraints) Performing minimization step: 4200. Total energy = 840.3604 kcal/mol (838.2595 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 840.3484 kcal/mol (838.2469 without restraints) Performing minimization step: 4202. Total energy = 840.3404 kcal/mol (838.2395 without restraints) Performing minimization step: 4203. Total energy = 840.3283 kcal/mol (838.2268 without restraints) Performing minimization step: 4204. Total energy = 840.3205 kcal/mol (838.2196 without restraints) Performing minimization step: 4205. Total energy = 840.3088 kcal/mol (838.2071 without restraints) Performing minimization step: 4206. Total energy = 840.3008 kcal/mol (838.1998 without restraints) Performing minimization step: 4207. Total energy = 840.2893 kcal/mol (838.1876 without restraints) Performing minimization step: 4208. Total energy = 840.2811 kcal/mol (838.1800 without restraints) Performing minimization step: 4209. Total energy = 840.2694 kcal/mol (838.1676 without restraints) Performing minimization step: 4210. Total energy = 840.2611 kcal/mol (838.1599 without restraints) Performing minimization step: 4211. Total energy = 840.2495 kcal/mol (838.1476 without restraints) Performing minimization step: 4212. Total energy = 840.2416 kcal/mol (838.1403 without restraints) Performing minimization step: 4213. Total energy = 840.2297 kcal/mol (838.1278 without restraints) Performing minimization step: 4214. Total energy = 840.2219 kcal/mol (838.1206 without restraints) Performing minimization step: 4215. Total energy = 840.2101 kcal/mol (838.1080 without restraints) Performing minimization step: 4216. Total energy = 840.2022 kcal/mol (838.1008 without restraints) Performing minimization step: 4217. Total energy = 840.1904 kcal/mol (838.0883 without restraints) Performing minimization step: 4218. Total energy = 840.1827 kcal/mol (838.0812 without restraints) Performing minimization step: 4219. Total energy = 840.1715 kcal/mol (838.0692 without restraints) Performing minimization step: 4220. Total energy = 840.1637 kcal/mol (838.0621 without restraints) Performing minimization step: 4221. Total energy = 840.1520 kcal/mol (838.0497 without restraints) Performing minimization step: 4222. Total energy = 840.1444 kcal/mol (838.0428 without restraints) Performing minimization step: 4223. Total energy = 840.1325 kcal/mol (838.0301 without restraints) Performing minimization step: 4224. Total energy = 840.1250 kcal/mol (838.0233 without restraints) Performing minimization step: 4225. Total energy = 840.1129 kcal/mol (838.0104 without restraints) Performing minimization step: 4226. Total energy = 840.1054 kcal/mol (838.0037 without restraints) Performing minimization step: 4227. Total energy = 840.0936 kcal/mol (837.9911 without restraints) Performing minimization step: 4228. Total energy = 840.0862 kcal/mol (837.9844 without restraints) Performing minimization step: 4229. Total energy = 840.0744 kcal/mol (837.9718 without restraints) Performing minimization step: 4230. Total energy = 840.0667 kcal/mol (837.9647 without restraints) Performing minimization step: 4231. Total energy = 840.0549 kcal/mol (837.9521 without restraints) Performing minimization step: 4232. Total energy = 840.0473 kcal/mol (837.9452 without restraints) Performing minimization step: 4233. Total energy = 840.0354 kcal/mol (837.9326 without restraints) Performing minimization step: 4234. Total energy = 840.0281 kcal/mol (837.9260 without restraints) Performing minimization step: 4235. Total energy = 840.0164 kcal/mol (837.9135 without restraints) Performing minimization step: 4236. Total energy = 840.0091 kcal/mol (837.9069 without restraints) Performing minimization step: 4237. Total energy = 839.9974 kcal/mol (837.8944 without restraints) Performing minimization step: 4238. Total energy = 839.9902 kcal/mol (837.8879 without restraints) Performing minimization step: 4239. Total energy = 839.9785 kcal/mol (837.8754 without restraints) Performing minimization step: 4240. Total energy = 839.9714 kcal/mol (837.8689 without restraints) Performing minimization step: 4241. Total energy = 839.9597 kcal/mol (837.8565 without restraints) Performing minimization step: 4242. Total energy = 839.9525 kcal/mol (837.8500 without restraints) Performing minimization step: 4243. Total energy = 839.9409 kcal/mol (837.8376 without restraints) Performing minimization step: 4244. Total energy = 839.9337 kcal/mol (837.8311 without restraints) Performing minimization step: 4245. Total energy = 839.9221 kcal/mol (837.8188 without restraints) Performing minimization step: 4246. Total energy = 839.9151 kcal/mol (837.8124 without restraints) Performing minimization step: 4247. Total energy = 839.9035 kcal/mol (837.8000 without restraints) Performing minimization step: 4248. Total energy = 839.8964 kcal/mol (837.7937 without restraints) Performing minimization step: 4249. Total energy = 839.8853 kcal/mol (837.7817 without restraints) Performing minimization step: 4250. Total energy = 839.8783 kcal/mol (837.7754 without restraints) Performing minimization step: 4251. Total energy = 839.8668 kcal/mol (837.7631 without restraints) Performing minimization step: 4252. Total energy = 839.8600 kcal/mol (837.7570 without restraints) Performing minimization step: 4253. Total energy = 839.8486 kcal/mol (837.7448 without restraints) Performing minimization step: 4254. Total energy = 839.8415 kcal/mol (837.7385 without restraints) Performing minimization step: 4255. Total energy = 839.8302 kcal/mol (837.7263 without restraints) Performing minimization step: 4256. Total energy = 839.8230 kcal/mol (837.7200 without restraints) Performing minimization step: 4257. Total energy = 839.8118 kcal/mol (837.7078 without restraints) Performing minimization step: 4258. Total energy = 839.8045 kcal/mol (837.7013 without restraints) Performing minimization step: 4259. Total energy = 839.7933 kcal/mol (837.6891 without restraints) Performing minimization step: 4260. Total energy = 839.7863 kcal/mol (837.6830 without restraints) Performing minimization step: 4261. Total energy = 839.7752 kcal/mol (837.6711 without restraints) Performing minimization step: 4262. Total energy = 839.7680 kcal/mol (837.6645 without restraints) Performing minimization step: 4263. Total energy = 839.7568 kcal/mol (837.6526 without restraints) Performing minimization step: 4264. Total energy = 839.7499 kcal/mol (837.6464 without restraints) Performing minimization step: 4265. Total energy = 839.7389 kcal/mol (837.6346 without restraints) Performing minimization step: 4266. Total energy = 839.7319 kcal/mol (837.6282 without restraints) Performing minimization step: 4267. Total energy = 839.7208 kcal/mol (837.6164 without restraints) Performing minimization step: 4268. Total energy = 839.7138 kcal/mol (837.6101 without restraints) Performing minimization step: 4269. Total energy = 839.7028 kcal/mol (837.5983 without restraints) Performing minimization step: 4270. Total energy = 839.6960 kcal/mol (837.5923 without restraints) Performing minimization step: 4271. Total energy = 839.6851 kcal/mol (837.5805 without restraints) Performing minimization step: 4272. Total energy = 839.6782 kcal/mol (837.5743 without restraints) Performing minimization step: 4273. Total energy = 839.6673 kcal/mol (837.5625 without restraints) Performing minimization step: 4274. Total energy = 839.6604 kcal/mol (837.5563 without restraints) Performing minimization step: 4275. Total energy = 839.6496 kcal/mol (837.5449 without restraints) Performing minimization step: 4276. Total energy = 839.6425 kcal/mol (837.5384 without restraints) Performing minimization step: 4277. Total energy = 839.6317 kcal/mol (837.5267 without restraints) Performing minimization step: 4278. Total energy = 839.6248 kcal/mol (837.5206 without restraints) Performing minimization step: 4279. Total energy = 839.6140 kcal/mol (837.5089 without restraints) Performing minimization step: 4280. Total energy = 839.6072 kcal/mol (837.5028 without restraints) Performing minimization step: 4281. Total energy = 839.5962 kcal/mol (837.4910 without restraints) Performing minimization step: 4282. Total energy = 839.5893 kcal/mol (837.4849 without restraints) Performing minimization step: 4283. Total energy = 839.5785 kcal/mol (837.4733 without restraints) Performing minimization step: 4284. Total energy = 839.5718 kcal/mol (837.4672 without restraints) Performing minimization step: 4285. Total energy = 839.5610 kcal/mol (837.4556 without restraints) Performing minimization step: 4286. Total energy = 839.5543 kcal/mol (837.4497 without restraints) Performing minimization step: 4287. Total energy = 839.5437 kcal/mol (837.4383 without restraints) Performing minimization step: 4288. Total energy = 839.5373 kcal/mol (837.4326 without restraints) Performing minimization step: 4289. Total energy = 839.5266 kcal/mol (837.4210 without restraints) Performing minimization step: 4290. Total energy = 839.5199 kcal/mol (837.4151 without restraints) Performing minimization step: 4291. Total energy = 839.5092 kcal/mol (837.4036 without restraints) Performing minimization step: 4292. Total energy = 839.5026 kcal/mol (837.3977 without restraints) Performing minimization step: 4293. Total energy = 839.4917 kcal/mol (837.3860 without restraints) Performing minimization step: 4294. Total energy = 839.4851 kcal/mol (837.3801 without restraints) Performing minimization step: 4295. Total energy = 839.4745 kcal/mol (837.3687 without restraints) Performing minimization step: 4296. Total energy = 839.4680 kcal/mol (837.3629 without restraints) Performing minimization step: 4297. Total energy = 839.4575 kcal/mol (837.3515 without restraints) Performing minimization step: 4298. Total energy = 839.4510 kcal/mol (837.3457 without restraints) Performing minimization step: 4299. Total energy = 839.4404 kcal/mol (837.3343 without restraints) Performing minimization step: 4300. Total energy = 839.4337 kcal/mol (837.3283 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 839.4231 kcal/mol (837.3169 without restraints) Performing minimization step: 4302. Total energy = 839.4166 kcal/mol (837.3112 without restraints) Performing minimization step: 4303. Total energy = 839.4061 kcal/mol (837.2998 without restraints) Performing minimization step: 4304. Total energy = 839.3996 kcal/mol (837.2941 without restraints) Performing minimization step: 4305. Total energy = 839.3892 kcal/mol (837.2828 without restraints) Performing minimization step: 4306. Total energy = 839.3827 kcal/mol (837.2770 without restraints) Performing minimization step: 4307. Total energy = 839.3721 kcal/mol (837.2656 without restraints) Performing minimization step: 4308. Total energy = 839.3658 kcal/mol (837.2600 without restraints) Performing minimization step: 4309. Total energy = 839.3552 kcal/mol (837.2486 without restraints) Performing minimization step: 4310. Total energy = 839.3485 kcal/mol (837.2426 without restraints) Performing minimization step: 4311. Total energy = 839.3380 kcal/mol (837.2312 without restraints) Performing minimization step: 4312. Total energy = 839.3315 kcal/mol (837.2255 without restraints) Performing minimization step: 4313. Total energy = 839.3213 kcal/mol (837.2145 without restraints) Performing minimization step: 4314. Total energy = 839.3148 kcal/mol (837.2086 without restraints) Performing minimization step: 4315. Total energy = 839.3046 kcal/mol (837.1976 without restraints) Performing minimization step: 4316. Total energy = 839.2982 kcal/mol (837.1920 without restraints) Performing minimization step: 4317. Total energy = 839.2879 kcal/mol (837.1808 without restraints) Performing minimization step: 4318. Total energy = 839.2816 kcal/mol (837.1753 without restraints) Performing minimization step: 4319. Total energy = 839.2714 kcal/mol (837.1642 without restraints) Performing minimization step: 4320. Total energy = 839.2651 kcal/mol (837.1586 without restraints) Performing minimization step: 4321. Total energy = 839.2548 kcal/mol (837.1475 without restraints) Performing minimization step: 4322. Total energy = 839.2486 kcal/mol (837.1420 without restraints) Performing minimization step: 4323. Total energy = 839.2384 kcal/mol (837.1309 without restraints) Performing minimization step: 4324. Total energy = 839.2321 kcal/mol (837.1254 without restraints) Performing minimization step: 4325. Total energy = 839.2220 kcal/mol (837.1144 without restraints) Performing minimization step: 4326. Total energy = 839.2158 kcal/mol (837.1089 without restraints) Performing minimization step: 4327. Total energy = 839.2056 kcal/mol (837.0979 without restraints) Performing minimization step: 4328. Total energy = 839.1995 kcal/mol (837.0925 without restraints) Performing minimization step: 4329. Total energy = 839.1893 kcal/mol (837.0815 without restraints) Performing minimization step: 4330. Total energy = 839.1833 kcal/mol (837.0763 without restraints) Performing minimization step: 4331. Total energy = 839.1733 kcal/mol (837.0653 without restraints) Performing minimization step: 4332. Total energy = 839.1672 kcal/mol (837.0600 without restraints) Performing minimization step: 4333. Total energy = 839.1569 kcal/mol (837.0488 without restraints) Performing minimization step: 4334. Total energy = 839.1508 kcal/mol (837.0435 without restraints) Performing minimization step: 4335. Total energy = 839.1407 kcal/mol (837.0325 without restraints) Performing minimization step: 4336. Total energy = 839.1346 kcal/mol (837.0273 without restraints) Performing minimization step: 4337. Total energy = 839.1247 kcal/mol (837.0164 without restraints) Performing minimization step: 4338. Total energy = 839.1186 kcal/mol (837.0111 without restraints) Performing minimization step: 4339. Total energy = 839.1086 kcal/mol (837.0002 without restraints) Performing minimization step: 4340. Total energy = 839.1028 kcal/mol (836.9952 without restraints) Performing minimization step: 4341. Total energy = 839.0929 kcal/mol (836.9844 without restraints) Performing minimization step: 4342. Total energy = 839.0870 kcal/mol (836.9793 without restraints) Performing minimization step: 4343. Total energy = 839.0771 kcal/mol (836.9684 without restraints) Performing minimization step: 4344. Total energy = 839.0711 kcal/mol (836.9632 without restraints) Performing minimization step: 4345. Total energy = 839.0612 kcal/mol (836.9524 without restraints) Performing minimization step: 4346. Total energy = 839.0552 kcal/mol (836.9473 without restraints) Performing minimization step: 4347. Total energy = 839.0455 kcal/mol (836.9366 without restraints) Performing minimization step: 4348. Total energy = 839.0397 kcal/mol (836.9316 without restraints) Performing minimization step: 4349. Total energy = 839.0298 kcal/mol (836.9207 without restraints) Performing minimization step: 4350. Total energy = 839.0239 kcal/mol (836.9156 without restraints) Performing minimization step: 4351. Total energy = 839.0140 kcal/mol (836.9048 without restraints) Performing minimization step: 4352. Total energy = 839.0081 kcal/mol (836.8998 without restraints) Performing minimization step: 4353. Total energy = 838.9983 kcal/mol (836.8890 without restraints) Performing minimization step: 4354. Total energy = 838.9924 kcal/mol (836.8839 without restraints) Performing minimization step: 4355. Total energy = 838.9827 kcal/mol (836.8733 without restraints) Performing minimization step: 4356. Total energy = 838.9768 kcal/mol (836.8682 without restraints) Performing minimization step: 4357. Total energy = 838.9670 kcal/mol (836.8574 without restraints) Performing minimization step: 4358. Total energy = 838.9611 kcal/mol (836.8524 without restraints) Performing minimization step: 4359. Total energy = 838.9515 kcal/mol (836.8418 without restraints) Performing minimization step: 4360. Total energy = 838.9456 kcal/mol (836.8366 without restraints) Performing minimization step: 4361. Total energy = 838.9360 kcal/mol (836.8262 without restraints) Performing minimization step: 4362. Total energy = 838.9301 kcal/mol (836.8210 without restraints) Performing minimization step: 4363. Total energy = 838.9208 kcal/mol (836.8109 without restraints) Performing minimization step: 4364. Total energy = 838.9151 kcal/mol (836.8058 without restraints) Performing minimization step: 4365. Total energy = 838.9056 kcal/mol (836.7955 without restraints) Performing minimization step: 4366. Total energy = 838.8997 kcal/mol (836.7903 without restraints) Performing minimization step: 4367. Total energy = 838.8902 kcal/mol (836.7800 without restraints) Performing minimization step: 4368. Total energy = 838.8843 kcal/mol (836.7748 without restraints) Performing minimization step: 4369. Total energy = 838.8749 kcal/mol (836.7646 without restraints) Performing minimization step: 4370. Total energy = 838.8691 kcal/mol (836.7596 without restraints) Performing minimization step: 4371. Total energy = 838.8596 kcal/mol (836.7491 without restraints) Performing minimization step: 4372. Total energy = 838.8537 kcal/mol (836.7438 without restraints) Performing minimization step: 4373. Total energy = 838.8445 kcal/mol (836.7339 without restraints) Performing minimization step: 4374. Total energy = 838.8387 kcal/mol (836.7289 without restraints) Performing minimization step: 4375. Total energy = 838.8297 kcal/mol (836.7190 without restraints) Performing minimization step: 4376. Total energy = 838.8237 kcal/mol (836.7135 without restraints) Performing minimization step: 4377. Total energy = 838.8145 kcal/mol (836.7036 without restraints) Performing minimization step: 4378. Total energy = 838.8085 kcal/mol (836.6983 without restraints) Performing minimization step: 4379. Total energy = 838.7993 kcal/mol (836.6883 without restraints) Performing minimization step: 4380. Total energy = 838.7937 kcal/mol (836.6833 without restraints) Performing minimization step: 4381. Total energy = 838.7846 kcal/mol (836.6733 without restraints) Performing minimization step: 4382. Total energy = 838.7784 kcal/mol (836.6681 without restraints) Performing minimization step: 4383. Total energy = 838.7693 kcal/mol (836.6580 without restraints) Performing minimization step: 4384. Total energy = 838.7633 kcal/mol (836.6527 without restraints) Performing minimization step: 4385. Total energy = 838.7544 kcal/mol (836.6430 without restraints) Performing minimization step: 4386. Total energy = 838.7482 kcal/mol (836.6372 without restraints) Performing minimization step: 4387. Total energy = 838.7401 kcal/mol (836.6285 without restraints) Performing minimization step: 4388. Total energy = 838.7339 kcal/mol (836.6231 without restraints) Performing minimization step: 4389. Total energy = 838.7249 kcal/mol (836.6133 without restraints) Performing minimization step: 4390. Total energy = 838.7192 kcal/mol (836.6081 without restraints) Performing minimization step: 4391. Total energy = 838.7104 kcal/mol (836.5986 without restraints) Performing minimization step: 4392. Total energy = 838.7045 kcal/mol (836.5933 without restraints) Performing minimization step: 4393. Total energy = 838.6957 kcal/mol (836.5837 without restraints) Performing minimization step: 4394. Total energy = 838.6896 kcal/mol (836.5782 without restraints) Performing minimization step: 4395. Total energy = 838.6811 kcal/mol (836.5691 without restraints) Performing minimization step: 4396. Total energy = 838.6751 kcal/mol (836.5636 without restraints) Performing minimization step: 4397. Total energy = 838.6664 kcal/mol (836.5543 without restraints) Performing minimization step: 4398. Total energy = 838.6605 kcal/mol (836.5488 without restraints) Performing minimization step: 4399. Total energy = 838.6518 kcal/mol (836.5395 without restraints) Performing minimization step: 4400. Total energy = 838.6455 kcal/mol (836.5337 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 838.6369 kcal/mol (836.5244 without restraints) Performing minimization step: 4402. Total energy = 838.6309 kcal/mol (836.5190 without restraints) Performing minimization step: 4403. Total energy = 838.6223 kcal/mol (836.5097 without restraints) Performing minimization step: 4404. Total energy = 838.6166 kcal/mol (836.5045 without restraints) Performing minimization step: 4405. Total energy = 838.6080 kcal/mol (836.4953 without restraints) Performing minimization step: 4406. Total energy = 838.6021 kcal/mol (836.4899 without restraints) Performing minimization step: 4407. Total energy = 838.5937 kcal/mol (836.4808 without restraints) Performing minimization step: 4408. Total energy = 838.5878 kcal/mol (836.4753 without restraints) Performing minimization step: 4409. Total energy = 838.5791 kcal/mol (836.4661 without restraints) Performing minimization step: 4410. Total energy = 838.5733 kcal/mol (836.4608 without restraints) Performing minimization step: 4411. Total energy = 838.5647 kcal/mol (836.4514 without restraints) Performing minimization step: 4412. Total energy = 838.5587 kcal/mol (836.4461 without restraints) Performing minimization step: 4413. Total energy = 838.5502 kcal/mol (836.4369 without restraints) Performing minimization step: 4414. Total energy = 838.5444 kcal/mol (836.4317 without restraints) Performing minimization step: 4415. Total energy = 838.5358 kcal/mol (836.4221 without restraints) Performing minimization step: 4416. Total energy = 838.5297 kcal/mol (836.4168 without restraints) Performing minimization step: 4417. Total energy = 838.5213 kcal/mol (836.4077 without restraints) Performing minimization step: 4418. Total energy = 838.5153 kcal/mol (836.4022 without restraints) Performing minimization step: 4419. Total energy = 838.5068 kcal/mol (836.3931 without restraints) Performing minimization step: 4420. Total energy = 838.5011 kcal/mol (836.3879 without restraints) Performing minimization step: 4421. Total energy = 838.4929 kcal/mol (836.3790 without restraints) Performing minimization step: 4422. Total energy = 838.4872 kcal/mol (836.3738 without restraints) Performing minimization step: 4423. Total energy = 838.4790 kcal/mol (836.3650 without restraints) Performing minimization step: 4424. Total energy = 838.4729 kcal/mol (836.3590 without restraints) Performing minimization step: 4425. Total energy = 838.4650 kcal/mol (836.3508 without restraints) Performing minimization step: 4426. Total energy = 838.4589 kcal/mol (836.3452 without restraints) Performing minimization step: 4427. Total energy = 838.4507 kcal/mol (836.3364 without restraints) Performing minimization step: 4428. Total energy = 838.4449 kcal/mol (836.3312 without restraints) Performing minimization step: 4429. Total energy = 838.4367 kcal/mol (836.3222 without restraints) Performing minimization step: 4430. Total energy = 838.4301 kcal/mol (836.3151 without restraints) Performing minimization step: 4431. Total energy = 838.4219 kcal/mol (836.3065 without restraints) Performing minimization step: 4432. Total energy = 838.4155 kcal/mol (836.3010 without restraints) Performing minimization step: 4433. Total energy = 838.4081 kcal/mol (836.2932 without restraints) Performing minimization step: 4434. Total energy = 838.4020 kcal/mol (836.2878 without restraints) Performing minimization step: 4435. Total energy = 838.3940 kcal/mol (836.2790 without restraints) Performing minimization step: 4436. Total energy = 838.3878 kcal/mol (836.2730 without restraints) Performing minimization step: 4437. Total energy = 838.3802 kcal/mol (836.2650 without restraints) Performing minimization step: 4438. Total energy = 838.3741 kcal/mol (836.2595 without restraints) Performing minimization step: 4439. Total energy = 838.3661 kcal/mol (836.2509 without restraints) Performing minimization step: 4440. Total energy = 838.3600 kcal/mol (836.2449 without restraints) Performing minimization step: 4441. Total energy = 838.3524 kcal/mol (836.2370 without restraints) Performing minimization step: 4442. Total energy = 838.3464 kcal/mol (836.2315 without restraints) Performing minimization step: 4443. Total energy = 838.3385 kcal/mol (836.2229 without restraints) Performing minimization step: 4444. Total energy = 838.3323 kcal/mol (836.2170 without restraints) Performing minimization step: 4445. Total energy = 838.3248 kcal/mol (836.2091 without restraints) Performing minimization step: 4446. Total energy = 838.3188 kcal/mol (836.2037 without restraints) Performing minimization step: 4447. Total energy = 838.3110 kcal/mol (836.1951 without restraints) Performing minimization step: 4448. Total energy = 838.3049 kcal/mol (836.1892 without restraints) Performing minimization step: 4449. Total energy = 838.2975 kcal/mol (836.1816 without restraints) Performing minimization step: 4450. Total energy = 838.2916 kcal/mol (836.1762 without restraints) Performing minimization step: 4451. Total energy = 838.2836 kcal/mol (836.1675 without restraints) Performing minimization step: 4452. Total energy = 838.2775 kcal/mol (836.1616 without restraints) Performing minimization step: 4453. Total energy = 838.2700 kcal/mol (836.1537 without restraints) Performing minimization step: 4454. Total energy = 838.2640 kcal/mol (836.1483 without restraints) Performing minimization step: 4455. Total energy = 838.2564 kcal/mol (836.1400 without restraints) Performing minimization step: 4456. Total energy = 838.2504 kcal/mol (836.1341 without restraints) Performing minimization step: 4457. Total energy = 838.2430 kcal/mol (836.1264 without restraints) Performing minimization step: 4458. Total energy = 838.2371 kcal/mol (836.1210 without restraints) Performing minimization step: 4459. Total energy = 838.2293 kcal/mol (836.1126 without restraints) Performing minimization step: 4460. Total energy = 838.2233 kcal/mol (836.1067 without restraints) Performing minimization step: 4461. Total energy = 838.2160 kcal/mol (836.0990 without restraints) Performing minimization step: 4462. Total energy = 838.2096 kcal/mol (836.0928 without restraints) Performing minimization step: 4463. Total energy = 838.2023 kcal/mol (836.0852 without restraints) Performing minimization step: 4464. Total energy = 838.1963 kcal/mol (836.0798 without restraints) Performing minimization step: 4465. Total energy = 838.1887 kcal/mol (836.0715 without restraints) Performing minimization step: 4466. Total energy = 838.1825 kcal/mol (836.0655 without restraints) Performing minimization step: 4467. Total energy = 838.1753 kcal/mol (836.0579 without restraints) Performing minimization step: 4468. Total energy = 838.1689 kcal/mol (836.0515 without restraints) Performing minimization step: 4469. Total energy = 838.1619 kcal/mol (836.0443 without restraints) Performing minimization step: 4470. Total energy = 838.1554 kcal/mol (836.0378 without restraints) Performing minimization step: 4471. Total energy = 838.1481 kcal/mol (836.0305 without restraints) Performing minimization step: 4472. Total energy = 838.1417 kcal/mol (836.0240 without restraints) Performing minimization step: 4473. Total energy = 838.1347 kcal/mol (836.0169 without restraints) Performing minimization step: 4474. Total energy = 838.1291 kcal/mol (836.0123 without restraints) Performing minimization step: 4475. Total energy = 838.1216 kcal/mol (836.0036 without restraints) Performing minimization step: 4476. Total energy = 838.1158 kcal/mol (835.9980 without restraints) Performing minimization step: 4477. Total energy = 838.1087 kcal/mol (835.9906 without restraints) Performing minimization step: 4478. Total energy = 838.1024 kcal/mol (835.9843 without restraints) Performing minimization step: 4479. Total energy = 838.0955 kcal/mol (835.9772 without restraints) Performing minimization step: 4480. Total energy = 838.0890 kcal/mol (835.9708 without restraints) Performing minimization step: 4481. Total energy = 838.0821 kcal/mol (835.9637 without restraints) Performing minimization step: 4482. Total energy = 838.0757 kcal/mol (835.9573 without restraints) Performing minimization step: 4483. Total energy = 838.0687 kcal/mol (835.9501 without restraints) Performing minimization step: 4484. Total energy = 838.0620 kcal/mol (835.9435 without restraints) Performing minimization step: 4485. Total energy = 838.0552 kcal/mol (835.9365 without restraints) Performing minimization step: 4486. Total energy = 838.0488 kcal/mol (835.9301 without restraints) Performing minimization step: 4487. Total energy = 838.0419 kcal/mol (835.9229 without restraints) Performing minimization step: 4488. Total energy = 838.0353 kcal/mol (835.9163 without restraints) Performing minimization step: 4489. Total energy = 838.0282 kcal/mol (835.9091 without restraints) Performing minimization step: 4490. Total energy = 838.0220 kcal/mol (835.9030 without restraints) Performing minimization step: 4491. Total energy = 838.0152 kcal/mol (835.8961 without restraints) Performing minimization step: 4492. Total energy = 838.0091 kcal/mol (835.8899 without restraints) Performing minimization step: 4493. Total energy = 838.0022 kcal/mol (835.8828 without restraints) Performing minimization step: 4494. Total energy = 837.9960 kcal/mol (835.8766 without restraints) Performing minimization step: 4495. Total energy = 837.9892 kcal/mol (835.8698 without restraints) Performing minimization step: 4496. Total energy = 837.9831 kcal/mol (835.8636 without restraints) Performing minimization step: 4497. Total energy = 837.9763 kcal/mol (835.8566 without restraints) Performing minimization step: 4498. Total energy = 837.9701 kcal/mol (835.8504 without restraints) Performing minimization step: 4499. Total energy = 837.9633 kcal/mol (835.8434 without restraints) Performing minimization step: 4500. Total energy = 837.9572 kcal/mol (835.8373 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 837.9502 kcal/mol (835.8301 without restraints) Performing minimization step: 4502. Total energy = 837.9440 kcal/mol (835.8240 without restraints) Performing minimization step: 4503. Total energy = 837.9374 kcal/mol (835.8172 without restraints) Performing minimization step: 4504. Total energy = 837.9315 kcal/mol (835.8113 without restraints) Performing minimization step: 4505. Total energy = 837.9245 kcal/mol (835.8041 without restraints) Performing minimization step: 4506. Total energy = 837.9184 kcal/mol (835.7980 without restraints) Performing minimization step: 4507. Total energy = 837.9119 kcal/mol (835.7915 without restraints) Performing minimization step: 4508. Total energy = 837.9058 kcal/mol (835.7852 without restraints) Performing minimization step: 4509. Total energy = 837.8991 kcal/mol (835.7784 without restraints) Performing minimization step: 4510. Total energy = 837.8930 kcal/mol (835.7724 without restraints) Performing minimization step: 4511. Total energy = 837.8863 kcal/mol (835.7653 without restraints) Performing minimization step: 4512. Total energy = 837.8801 kcal/mol (835.7592 without restraints) Performing minimization step: 4513. Total energy = 837.8736 kcal/mol (835.7526 without restraints) Performing minimization step: 4514. Total energy = 837.8676 kcal/mol (835.7465 without restraints) Performing minimization step: 4515. Total energy = 837.8610 kcal/mol (835.7398 without restraints) Performing minimization step: 4516. Total energy = 837.8549 kcal/mol (835.7337 without restraints) Performing minimization step: 4517. Total energy = 837.8483 kcal/mol (835.7270 without restraints) Performing minimization step: 4518. Total energy = 837.8424 kcal/mol (835.7211 without restraints) Performing minimization step: 4519. Total energy = 837.8359 kcal/mol (835.7143 without restraints) Performing minimization step: 4520. Total energy = 837.8298 kcal/mol (835.7083 without restraints) Performing minimization step: 4521. Total energy = 837.8233 kcal/mol (835.7016 without restraints) Performing minimization step: 4522. Total energy = 837.8172 kcal/mol (835.6955 without restraints) Performing minimization step: 4523. Total energy = 837.8107 kcal/mol (835.6888 without restraints) Performing minimization step: 4524. Total energy = 837.8046 kcal/mol (835.6827 without restraints) Performing minimization step: 4525. Total energy = 837.7981 kcal/mol (835.6761 without restraints) Performing minimization step: 4526. Total energy = 837.7921 kcal/mol (835.6700 without restraints) Performing minimization step: 4527. Total energy = 837.7855 kcal/mol (835.6632 without restraints) Performing minimization step: 4528. Total energy = 837.7795 kcal/mol (835.6575 without restraints) Performing minimization step: 4529. Total energy = 837.7733 kcal/mol (835.6509 without restraints) Performing minimization step: 4530. Total energy = 837.7672 kcal/mol (835.6448 without restraints) Performing minimization step: 4531. Total energy = 837.7607 kcal/mol (835.6383 without restraints) Performing minimization step: 4532. Total energy = 837.7548 kcal/mol (835.6322 without restraints) Performing minimization step: 4533. Total energy = 837.7486 kcal/mol (835.6259 without restraints) Performing minimization step: 4534. Total energy = 837.7426 kcal/mol (835.6199 without restraints) Performing minimization step: 4535. Total energy = 837.7363 kcal/mol (835.6134 without restraints) Performing minimization step: 4536. Total energy = 837.7303 kcal/mol (835.6074 without restraints) Performing minimization step: 4537. Total energy = 837.7240 kcal/mol (835.6009 without restraints) Performing minimization step: 4538. Total energy = 837.7180 kcal/mol (835.5949 without restraints) Performing minimization step: 4539. Total energy = 837.7116 kcal/mol (835.5884 without restraints) Performing minimization step: 4540. Total energy = 837.7056 kcal/mol (835.5824 without restraints) Performing minimization step: 4541. Total energy = 837.6993 kcal/mol (835.5759 without restraints) Performing minimization step: 4542. Total energy = 837.6933 kcal/mol (835.5699 without restraints) Performing minimization step: 4543. Total energy = 837.6870 kcal/mol (835.5635 without restraints) Performing minimization step: 4544. Total energy = 837.6811 kcal/mol (835.5575 without restraints) Performing minimization step: 4545. Total energy = 837.6748 kcal/mol (835.5510 without restraints) Performing minimization step: 4546. Total energy = 837.6688 kcal/mol (835.5451 without restraints) Performing minimization step: 4547. Total energy = 837.6626 kcal/mol (835.5387 without restraints) Performing minimization step: 4548. Total energy = 837.6566 kcal/mol (835.5327 without restraints) Performing minimization step: 4549. Total energy = 837.6504 kcal/mol (835.5263 without restraints) Performing minimization step: 4550. Total energy = 837.6445 kcal/mol (835.5204 without restraints) Performing minimization step: 4551. Total energy = 837.6383 kcal/mol (835.5140 without restraints) Performing minimization step: 4552. Total energy = 837.6323 kcal/mol (835.5080 without restraints) Performing minimization step: 4553. Total energy = 837.6263 kcal/mol (835.5021 without restraints) Performing minimization step: 4554. Total energy = 837.6206 kcal/mol (835.4962 without restraints) Performing minimization step: 4555. Total energy = 837.6145 kcal/mol (835.4899 without restraints) Performing minimization step: 4556. Total energy = 837.6085 kcal/mol (835.4839 without restraints) Performing minimization step: 4557. Total energy = 837.6024 kcal/mol (835.4777 without restraints) Performing minimization step: 4558. Total energy = 837.5965 kcal/mol (835.4717 without restraints) Performing minimization step: 4559. Total energy = 837.5904 kcal/mol (835.4654 without restraints) Performing minimization step: 4560. Total energy = 837.5845 kcal/mol (835.4595 without restraints) Performing minimization step: 4561. Total energy = 837.5784 kcal/mol (835.4533 without restraints) Performing minimization step: 4562. Total energy = 837.5725 kcal/mol (835.4473 without restraints) Performing minimization step: 4563. Total energy = 837.5665 kcal/mol (835.4412 without restraints) Performing minimization step: 4564. Total energy = 837.5606 kcal/mol (835.4352 without restraints) Performing minimization step: 4565. Total energy = 837.5544 kcal/mol (835.4288 without restraints) Performing minimization step: 4566. Total energy = 837.5484 kcal/mol (835.4229 without restraints) Performing minimization step: 4567. Total energy = 837.5424 kcal/mol (835.4167 without restraints) Performing minimization step: 4568. Total energy = 837.5363 kcal/mol (835.4106 without restraints) Performing minimization step: 4569. Total energy = 837.5305 kcal/mol (835.4049 without restraints) Performing minimization step: 4570. Total energy = 837.5248 kcal/mol (835.3990 without restraints) Performing minimization step: 4571. Total energy = 837.5190 kcal/mol (835.3930 without restraints) Performing minimization step: 4572. Total energy = 837.5132 kcal/mol (835.3871 without restraints) Performing minimization step: 4573. Total energy = 837.5073 kcal/mol (835.3812 without restraints) Performing minimization step: 4574. Total energy = 837.5015 kcal/mol (835.3753 without restraints) Performing minimization step: 4575. Total energy = 837.4957 kcal/mol (835.3694 without restraints) Performing minimization step: 4576. Total energy = 837.4899 kcal/mol (835.3635 without restraints) Performing minimization step: 4577. Total energy = 837.4841 kcal/mol (835.3576 without restraints) Performing minimization step: 4578. Total energy = 837.4783 kcal/mol (835.3517 without restraints) Performing minimization step: 4579. Total energy = 837.4725 kcal/mol (835.3459 without restraints) Performing minimization step: 4580. Total energy = 837.4668 kcal/mol (835.3400 without restraints) Performing minimization step: 4581. Total energy = 837.4610 kcal/mol (835.3342 without restraints) Performing minimization step: 4582. Total energy = 837.4552 kcal/mol (835.3283 without restraints) Performing minimization step: 4583. Total energy = 837.4496 kcal/mol (835.3225 without restraints) Performing minimization step: 4584. Total energy = 837.4437 kcal/mol (835.3166 without restraints) Performing minimization step: 4585. Total energy = 837.4381 kcal/mol (835.3109 without restraints) Performing minimization step: 4586. Total energy = 837.4323 kcal/mol (835.3050 without restraints) Performing minimization step: 4587. Total energy = 837.4265 kcal/mol (835.2991 without restraints) Performing minimization step: 4588. Total energy = 837.4208 kcal/mol (835.2933 without restraints) Performing minimization step: 4589. Total energy = 837.4150 kcal/mol (835.2874 without restraints) Performing minimization step: 4590. Total energy = 837.4094 kcal/mol (835.2818 without restraints) Performing minimization step: 4591. Total energy = 837.4038 kcal/mol (835.2761 without restraints) Performing minimization step: 4592. Total energy = 837.3978 kcal/mol (835.2700 without restraints) Performing minimization step: 4593. Total energy = 837.3920 kcal/mol (835.2641 without restraints) Performing minimization step: 4594. Total energy = 837.3863 kcal/mol (835.2582 without restraints) Performing minimization step: 4595. Total energy = 837.3805 kcal/mol (835.2524 without restraints) Performing minimization step: 4596. Total energy = 837.3747 kcal/mol (835.2465 without restraints) Performing minimization step: 4597. Total energy = 837.3690 kcal/mol (835.2407 without restraints) Performing minimization step: 4598. Total energy = 837.3632 kcal/mol (835.2348 without restraints) Performing minimization step: 4599. Total energy = 837.3575 kcal/mol (835.2290 without restraints) Performing minimization step: 4600. Total energy = 837.3517 kcal/mol (835.2231 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 837.3460 kcal/mol (835.2174 without restraints) Performing minimization step: 4602. Total energy = 837.3402 kcal/mol (835.2115 without restraints) Performing minimization step: 4603. Total energy = 837.3346 kcal/mol (835.2057 without restraints) Performing minimization step: 4604. Total energy = 837.3288 kcal/mol (835.1998 without restraints) Performing minimization step: 4605. Total energy = 837.3231 kcal/mol (835.1941 without restraints) Performing minimization step: 4606. Total energy = 837.3174 kcal/mol (835.1882 without restraints) Performing minimization step: 4607. Total energy = 837.3117 kcal/mol (835.1825 without restraints) Performing minimization step: 4608. Total energy = 837.3060 kcal/mol (835.1767 without restraints) Performing minimization step: 4609. Total energy = 837.3003 kcal/mol (835.1710 without restraints) Performing minimization step: 4610. Total energy = 837.2948 kcal/mol (835.1653 without restraints) Performing minimization step: 4611. Total energy = 837.2892 kcal/mol (835.1596 without restraints) Performing minimization step: 4612. Total energy = 837.2835 kcal/mol (835.1538 without restraints) Performing minimization step: 4613. Total energy = 837.2779 kcal/mol (835.1481 without restraints) Performing minimization step: 4614. Total energy = 837.2722 kcal/mol (835.1423 without restraints) Performing minimization step: 4615. Total energy = 837.2665 kcal/mol (835.1366 without restraints) Performing minimization step: 4616. Total energy = 837.2608 kcal/mol (835.1308 without restraints) Performing minimization step: 4617. Total energy = 837.2552 kcal/mol (835.1251 without restraints) Performing minimization step: 4618. Total energy = 837.2501 kcal/mol (835.1199 without restraints) Performing minimization step: 4619. Total energy = 837.2446 kcal/mol (835.1143 without restraints) Performing minimization step: 4620. Total energy = 837.2388 kcal/mol (835.1083 without restraints) Performing minimization step: 4621. Total energy = 837.2332 kcal/mol (835.1027 without restraints) Performing minimization step: 4622. Total energy = 837.2277 kcal/mol (835.0971 without restraints) Performing minimization step: 4623. Total energy = 837.2222 kcal/mol (835.0916 without restraints) Performing minimization step: 4624. Total energy = 837.2165 kcal/mol (835.0857 without restraints) Performing minimization step: 4625. Total energy = 837.2110 kcal/mol (835.0802 without restraints) Performing minimization step: 4626. Total energy = 837.2053 kcal/mol (835.0744 without restraints) Performing minimization step: 4627. Total energy = 837.2000 kcal/mol (835.0690 without restraints) Performing minimization step: 4628. Total energy = 837.1944 kcal/mol (835.0632 without restraints) Performing minimization step: 4629. Total energy = 837.1891 kcal/mol (835.0579 without restraints) Performing minimization step: 4630. Total energy = 837.1835 kcal/mol (835.0521 without restraints) Performing minimization step: 4631. Total energy = 837.1780 kcal/mol (835.0467 without restraints) Performing minimization step: 4632. Total energy = 837.1725 kcal/mol (835.0410 without restraints) Performing minimization step: 4633. Total energy = 837.1671 kcal/mol (835.0356 without restraints) Performing minimization step: 4634. Total energy = 837.1615 kcal/mol (835.0298 without restraints) Performing minimization step: 4635. Total energy = 837.1561 kcal/mol (835.0244 without restraints) Performing minimization step: 4636. Total energy = 837.1504 kcal/mol (835.0185 without restraints) Performing minimization step: 4637. Total energy = 837.1450 kcal/mol (835.0131 without restraints) Performing minimization step: 4638. Total energy = 837.1394 kcal/mol (835.0073 without restraints) Performing minimization step: 4639. Total energy = 837.1341 kcal/mol (835.0020 without restraints) Performing minimization step: 4640. Total energy = 837.1284 kcal/mol (834.9962 without restraints) Performing minimization step: 4641. Total energy = 837.1231 kcal/mol (834.9908 without restraints) Performing minimization step: 4642. Total energy = 837.1174 kcal/mol (834.9849 without restraints) Performing minimization step: 4643. Total energy = 837.1120 kcal/mol (834.9796 without restraints) Performing minimization step: 4644. Total energy = 837.1064 kcal/mol (834.9737 without restraints) Performing minimization step: 4645. Total energy = 837.1010 kcal/mol (834.9682 without restraints) Performing minimization step: 4646. Total energy = 837.0951 kcal/mol (834.9622 without restraints) Performing minimization step: 4647. Total energy = 837.0898 kcal/mol (834.9569 without restraints) Performing minimization step: 4648. Total energy = 837.0841 kcal/mol (834.9511 without restraints) Performing minimization step: 4649. Total energy = 837.0788 kcal/mol (834.9458 without restraints) Performing minimization step: 4650. Total energy = 837.0732 kcal/mol (834.9400 without restraints) Performing minimization step: 4651. Total energy = 837.0679 kcal/mol (834.9347 without restraints) Performing minimization step: 4652. Total energy = 837.0623 kcal/mol (834.9289 without restraints) Performing minimization step: 4653. Total energy = 837.0572 kcal/mol (834.9239 without restraints) Performing minimization step: 4654. Total energy = 837.0516 kcal/mol (834.9179 without restraints) Performing minimization step: 4655. Total energy = 837.0462 kcal/mol (834.9126 without restraints) Performing minimization step: 4656. Total energy = 837.0406 kcal/mol (834.9068 without restraints) Performing minimization step: 4657. Total energy = 837.0354 kcal/mol (834.9016 without restraints) Performing minimization step: 4658. Total energy = 837.0298 kcal/mol (834.8959 without restraints) Performing minimization step: 4659. Total energy = 837.0246 kcal/mol (834.8907 without restraints) Performing minimization step: 4660. Total energy = 837.0191 kcal/mol (834.8849 without restraints) Performing minimization step: 4661. Total energy = 837.0139 kcal/mol (834.8797 without restraints) Performing minimization step: 4662. Total energy = 837.0083 kcal/mol (834.8739 without restraints) Performing minimization step: 4663. Total energy = 837.0031 kcal/mol (834.8688 without restraints) Performing minimization step: 4664. Total energy = 836.9976 kcal/mol (834.8630 without restraints) Performing minimization step: 4665. Total energy = 836.9924 kcal/mol (834.8579 without restraints) Performing minimization step: 4666. Total energy = 836.9868 kcal/mol (834.8521 without restraints) Performing minimization step: 4667. Total energy = 836.9815 kcal/mol (834.8465 without restraints) Performing minimization step: 4668. Total energy = 836.9757 kcal/mol (834.8407 without restraints) Performing minimization step: 4669. Total energy = 836.9705 kcal/mol (834.8356 without restraints) Performing minimization step: 4670. Total energy = 836.9650 kcal/mol (834.8299 without restraints) Performing minimization step: 4671. Total energy = 836.9599 kcal/mol (834.8248 without restraints) Performing minimization step: 4672. Total energy = 836.9543 kcal/mol (834.8190 without restraints) Performing minimization step: 4673. Total energy = 836.9492 kcal/mol (834.8139 without restraints) Performing minimization step: 4674. Total energy = 836.9437 kcal/mol (834.8082 without restraints) Performing minimization step: 4675. Total energy = 836.9386 kcal/mol (834.8032 without restraints) Performing minimization step: 4676. Total energy = 836.9331 kcal/mol (834.7974 without restraints) Performing minimization step: 4677. Total energy = 836.9279 kcal/mol (834.7922 without restraints) Performing minimization step: 4678. Total energy = 836.9223 kcal/mol (834.7864 without restraints) Performing minimization step: 4679. Total energy = 836.9172 kcal/mol (834.7814 without restraints) Performing minimization step: 4680. Total energy = 836.9117 kcal/mol (834.7756 without restraints) Performing minimization step: 4681. Total energy = 836.9068 kcal/mol (834.7709 without restraints) Performing minimization step: 4682. Total energy = 836.9014 kcal/mol (834.7651 without restraints) Performing minimization step: 4683. Total energy = 836.8963 kcal/mol (834.7601 without restraints) Performing minimization step: 4684. Total energy = 836.8908 kcal/mol (834.7543 without restraints) Performing minimization step: 4685. Total energy = 836.8858 kcal/mol (834.7494 without restraints) Performing minimization step: 4686. Total energy = 836.8803 kcal/mol (834.7436 without restraints) Performing minimization step: 4687. Total energy = 836.8753 kcal/mol (834.7387 without restraints) Performing minimization step: 4688. Total energy = 836.8698 kcal/mol (834.7329 without restraints) Performing minimization step: 4689. Total energy = 836.8648 kcal/mol (834.7280 without restraints) Performing minimization step: 4690. Total energy = 836.8593 kcal/mol (834.7223 without restraints) Performing minimization step: 4691. Total energy = 836.8543 kcal/mol (834.7173 without restraints) Performing minimization step: 4692. Total energy = 836.8489 kcal/mol (834.7117 without restraints) Performing minimization step: 4693. Total energy = 836.8436 kcal/mol (834.7064 without restraints) Performing minimization step: 4694. Total energy = 836.8383 kcal/mol (834.7009 without restraints) Performing minimization step: 4695. Total energy = 836.8333 kcal/mol (834.6959 without restraints) Performing minimization step: 4696. Total energy = 836.8279 kcal/mol (834.6903 without restraints) Performing minimization step: 4697. Total energy = 836.8228 kcal/mol (834.6851 without restraints) Performing minimization step: 4698. Total energy = 836.8174 kcal/mol (834.6796 without restraints) Performing minimization step: 4699. Total energy = 836.8125 kcal/mol (834.6748 without restraints) Performing minimization step: 4700. Total energy = 836.8072 kcal/mol (834.6692 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 836.8022 kcal/mol (834.6642 without restraints) Performing minimization step: 4702. Total energy = 836.7959 kcal/mol (834.6567 without restraints) Performing minimization step: 4703. Total energy = 836.7905 kcal/mol (834.6515 without restraints) Performing minimization step: 4704. Total energy = 836.7839 kcal/mol (834.6446 without restraints) Performing minimization step: 4705. Total energy = 836.7788 kcal/mol (834.6398 without restraints) Performing minimization step: 4706. Total energy = 836.7723 kcal/mol (834.6327 without restraints) Performing minimization step: 4707. Total energy = 836.7670 kcal/mol (834.6277 without restraints) Performing minimization step: 4708. Total energy = 836.7612 kcal/mol (834.6224 without restraints) Performing minimization step: 4709. Total energy = 836.7561 kcal/mol (834.6173 without restraints) Performing minimization step: 4710. Total energy = 836.7500 kcal/mol (834.6100 without restraints) Performing minimization step: 4711. Total energy = 836.7447 kcal/mol (834.6049 without restraints) Performing minimization step: 4712. Total energy = 836.7382 kcal/mol (834.5980 without restraints) Performing minimization step: 4713. Total energy = 836.7331 kcal/mol (834.5932 without restraints) Performing minimization step: 4714. Total energy = 836.7265 kcal/mol (834.5860 without restraints) Performing minimization step: 4715. Total energy = 836.7213 kcal/mol (834.5810 without restraints) Performing minimization step: 4716. Total energy = 836.7147 kcal/mol (834.5741 without restraints) Performing minimization step: 4717. Total energy = 836.7098 kcal/mol (834.5695 without restraints) Performing minimization step: 4718. Total energy = 836.7033 kcal/mol (834.5624 without restraints) Performing minimization step: 4719. Total energy = 836.6982 kcal/mol (834.5577 without restraints) Performing minimization step: 4720. Total energy = 836.6917 kcal/mol (834.5507 without restraints) Performing minimization step: 4721. Total energy = 836.6866 kcal/mol (834.5458 without restraints) Performing minimization step: 4722. Total energy = 836.6801 kcal/mol (834.5387 without restraints) Performing minimization step: 4723. Total energy = 836.6750 kcal/mol (834.5339 without restraints) Performing minimization step: 4724. Total energy = 836.6684 kcal/mol (834.5269 without restraints) Performing minimization step: 4725. Total energy = 836.6633 kcal/mol (834.5220 without restraints) Performing minimization step: 4726. Total energy = 836.6568 kcal/mol (834.5150 without restraints) Performing minimization step: 4727. Total energy = 836.6517 kcal/mol (834.5102 without restraints) Performing minimization step: 4728. Total energy = 836.6451 kcal/mol (834.5031 without restraints) Performing minimization step: 4729. Total energy = 836.6401 kcal/mol (834.4983 without restraints) Performing minimization step: 4730. Total energy = 836.6335 kcal/mol (834.4913 without restraints) Performing minimization step: 4731. Total energy = 836.6285 kcal/mol (834.4865 without restraints) Performing minimization step: 4732. Total energy = 836.6219 kcal/mol (834.4795 without restraints) Performing minimization step: 4733. Total energy = 836.6168 kcal/mol (834.4745 without restraints) Performing minimization step: 4734. Total energy = 836.6101 kcal/mol (834.4675 without restraints) Performing minimization step: 4735. Total energy = 836.6051 kcal/mol (834.4627 without restraints) Performing minimization step: 4736. Total energy = 836.5986 kcal/mol (834.4557 without restraints) Performing minimization step: 4737. Total energy = 836.5936 kcal/mol (834.4509 without restraints) Performing minimization step: 4738. Total energy = 836.5870 kcal/mol (834.4439 without restraints) Performing minimization step: 4739. Total energy = 836.5821 kcal/mol (834.4392 without restraints) Performing minimization step: 4740. Total energy = 836.5765 kcal/mol (834.4341 without restraints) Performing minimization step: 4741. Total energy = 836.5715 kcal/mol (834.4289 without restraints) Performing minimization step: 4742. Total energy = 836.5658 kcal/mol (834.4224 without restraints) Performing minimization step: 4743. Total energy = 836.5608 kcal/mol (834.4177 without restraints) Performing minimization step: 4744. Total energy = 836.5542 kcal/mol (834.4104 without restraints) Performing minimization step: 4745. Total energy = 836.5492 kcal/mol (834.4056 without restraints) Performing minimization step: 4746. Total energy = 836.5427 kcal/mol (834.3987 without restraints) Performing minimization step: 4747. Total energy = 836.5379 kcal/mol (834.3942 without restraints) Performing minimization step: 4748. Total energy = 836.5313 kcal/mol (834.3870 without restraints) Performing minimization step: 4749. Total energy = 836.5264 kcal/mol (834.3824 without restraints) Performing minimization step: 4750. Total energy = 836.5199 kcal/mol (834.3754 without restraints) Performing minimization step: 4751. Total energy = 836.5150 kcal/mol (834.3708 without restraints) Performing minimization step: 4752. Total energy = 836.5085 kcal/mol (834.3638 without restraints) Performing minimization step: 4753. Total energy = 836.5036 kcal/mol (834.3592 without restraints) Performing minimization step: 4754. Total energy = 836.4971 kcal/mol (834.3522 without restraints) Performing minimization step: 4755. Total energy = 836.4924 kcal/mol (834.3478 without restraints) Performing minimization step: 4756. Total energy = 836.4859 kcal/mol (834.3408 without restraints) Performing minimization step: 4757. Total energy = 836.4811 kcal/mol (834.3362 without restraints) Performing minimization step: 4758. Total energy = 836.4746 kcal/mol (834.3292 without restraints) Performing minimization step: 4759. Total energy = 836.4698 kcal/mol (834.3247 without restraints) Performing minimization step: 4760. Total energy = 836.4633 kcal/mol (834.3176 without restraints) Performing minimization step: 4761. Total energy = 836.4585 kcal/mol (834.3131 without restraints) Performing minimization step: 4762. Total energy = 836.4520 kcal/mol (834.3061 without restraints) Performing minimization step: 4763. Total energy = 836.4472 kcal/mol (834.3016 without restraints) Performing minimization step: 4764. Total energy = 836.4406 kcal/mol (834.2945 without restraints) Performing minimization step: 4765. Total energy = 836.4360 kcal/mol (834.2903 without restraints) Performing minimization step: 4766. Total energy = 836.4296 kcal/mol (834.2832 without restraints) Performing minimization step: 4767. Total energy = 836.4248 kcal/mol (834.2788 without restraints) Performing minimization step: 4768. Total energy = 836.4183 kcal/mol (834.2717 without restraints) Performing minimization step: 4769. Total energy = 836.4135 kcal/mol (834.2673 without restraints) Performing minimization step: 4770. Total energy = 836.4070 kcal/mol (834.2602 without restraints) Performing minimization step: 4771. Total energy = 836.4024 kcal/mol (834.2559 without restraints) Performing minimization step: 4772. Total energy = 836.3959 kcal/mol (834.2488 without restraints) Performing minimization step: 4773. Total energy = 836.3912 kcal/mol (834.2444 without restraints) Performing minimization step: 4774. Total energy = 836.3849 kcal/mol (834.2376 without restraints) Performing minimization step: 4775. Total energy = 836.3802 kcal/mol (834.2333 without restraints) Performing minimization step: 4776. Total energy = 836.3735 kcal/mol (834.2260 without restraints) Performing minimization step: 4777. Total energy = 836.3689 kcal/mol (834.2217 without restraints) Performing minimization step: 4778. Total energy = 836.3624 kcal/mol (834.2146 without restraints) Performing minimization step: 4779. Total energy = 836.3577 kcal/mol (834.2103 without restraints) Performing minimization step: 4780. Total energy = 836.3512 kcal/mol (834.2032 without restraints) Performing minimization step: 4781. Total energy = 836.3466 kcal/mol (834.1989 without restraints) Performing minimization step: 4782. Total energy = 836.3398 kcal/mol (834.1916 without restraints) Performing minimization step: 4783. Total energy = 836.3352 kcal/mol (834.1875 without restraints) Performing minimization step: 4784. Total energy = 836.3289 kcal/mol (834.1804 without restraints) Performing minimization step: 4785. Total energy = 836.3242 kcal/mol (834.1761 without restraints) Performing minimization step: 4786. Total energy = 836.3178 kcal/mol (834.1691 without restraints) Performing minimization step: 4787. Total energy = 836.3133 kcal/mol (834.1650 without restraints) Performing minimization step: 4788. Total energy = 836.3067 kcal/mol (834.1577 without restraints) Performing minimization step: 4789. Total energy = 836.3021 kcal/mol (834.1535 without restraints) Performing minimization step: 4790. Total energy = 836.2956 kcal/mol (834.1464 without restraints) Performing minimization step: 4791. Total energy = 836.2908 kcal/mol (834.1420 without restraints) Performing minimization step: 4792. Total energy = 836.2843 kcal/mol (834.1349 without restraints) Performing minimization step: 4793. Total energy = 836.2797 kcal/mol (834.1307 without restraints) Performing minimization step: 4794. Total energy = 836.2732 kcal/mol (834.1236 without restraints) Performing minimization step: 4795. Total energy = 836.2687 kcal/mol (834.1194 without restraints) Performing minimization step: 4796. Total energy = 836.2622 kcal/mol (834.1124 without restraints) Performing minimization step: 4797. Total energy = 836.2577 kcal/mol (834.1082 without restraints) Performing minimization step: 4798. Total energy = 836.2512 kcal/mol (834.1011 without restraints) Performing minimization step: 4799. Total energy = 836.2469 kcal/mol (834.0971 without restraints) Performing minimization step: 4800. Total energy = 836.2402 kcal/mol (834.0899 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 836.2357 kcal/mol (834.0857 without restraints) Performing minimization step: 4802. Total energy = 836.2292 kcal/mol (834.0787 without restraints) Performing minimization step: 4803. Total energy = 836.2247 kcal/mol (834.0745 without restraints) Performing minimization step: 4804. Total energy = 836.2183 kcal/mol (834.0675 without restraints) Performing minimization step: 4805. Total energy = 836.2138 kcal/mol (834.0633 without restraints) Performing minimization step: 4806. Total energy = 836.2073 kcal/mol (834.0563 without restraints) Performing minimization step: 4807. Total energy = 836.2029 kcal/mol (834.0522 without restraints) Performing minimization step: 4808. Total energy = 836.1964 kcal/mol (834.0451 without restraints) Performing minimization step: 4809. Total energy = 836.1920 kcal/mol (834.0412 without restraints) Performing minimization step: 4810. Total energy = 836.1857 kcal/mol (834.0342 without restraints) Performing minimization step: 4811. Total energy = 836.1812 kcal/mol (834.0300 without restraints) Performing minimization step: 4812. Total energy = 836.1747 kcal/mol (834.0230 without restraints) Performing minimization step: 4813. Total energy = 836.1704 kcal/mol (834.0190 without restraints) Performing minimization step: 4814. Total energy = 836.1640 kcal/mol (834.0120 without restraints) Performing minimization step: 4815. Total energy = 836.1596 kcal/mol (834.0080 without restraints) Performing minimization step: 4816. Total energy = 836.1532 kcal/mol (834.0010 without restraints) Performing minimization step: 4817. Total energy = 836.1488 kcal/mol (833.9969 without restraints) Performing minimization step: 4818. Total energy = 836.1424 kcal/mol (833.9899 without restraints) Performing minimization step: 4819. Total energy = 836.1379 kcal/mol (833.9858 without restraints) Performing minimization step: 4820. Total energy = 836.1315 kcal/mol (833.9789 without restraints) Performing minimization step: 4821. Total energy = 836.1270 kcal/mol (833.9745 without restraints) Performing minimization step: 4822. Total energy = 836.1225 kcal/mol (833.9716 without restraints) Performing minimization step: 4823. Total energy = 836.1167 kcal/mol (833.9647 without restraints) Performing minimization step: 4824. Total energy = 836.1129 kcal/mol (833.9613 without restraints) Performing minimization step: 4825. Total energy = 836.1076 kcal/mol (833.9551 without restraints) Performing minimization step: 4826. Total energy = 836.1028 kcal/mol (833.9492 without restraints) Performing minimization step: 4827. Total energy = 836.0961 kcal/mol (833.9421 without restraints) Performing minimization step: 4828. Total energy = 836.0907 kcal/mol (833.9370 without restraints) Performing minimization step: 4829. Total energy = 836.0846 kcal/mol (833.9306 without restraints) Performing minimization step: 4830. Total energy = 836.0786 kcal/mol (833.9246 without restraints) Performing minimization step: 4831. Total energy = 836.0719 kcal/mol (833.9172 without restraints) Performing minimization step: 4832. Total energy = 836.0668 kcal/mol (833.9127 without restraints) Performing minimization step: 4833. Total energy = 836.0615 kcal/mol (833.9071 without restraints) Performing minimization step: 4834. Total energy = 836.0559 kcal/mol (833.9017 without restraints) Performing minimization step: 4835. Total energy = 836.0512 kcal/mol (833.8970 without restraints) Performing minimization step: 4836. Total energy = 836.0455 kcal/mol (833.8907 without restraints) Performing minimization step: 4837. Total energy = 836.0381 kcal/mol (833.8824 without restraints) Performing minimization step: 4838. Total energy = 836.0335 kcal/mol (833.8784 without restraints) Performing minimization step: 4839. Total energy = 836.0278 kcal/mol (833.8729 without restraints) Performing minimization step: 4840. Total energy = 836.0217 kcal/mol (833.8662 without restraints) Performing minimization step: 4841. Total energy = 836.0153 kcal/mol (833.8596 without restraints) Performing minimization step: 4842. Total energy = 836.0098 kcal/mol (833.8540 without restraints) Performing minimization step: 4843. Total energy = 836.0035 kcal/mol (833.8475 without restraints) Performing minimization step: 4844. Total energy = 835.9987 kcal/mol (833.8433 without restraints) Performing minimization step: 4845. Total energy = 835.9939 kcal/mol (833.8388 without restraints) Performing minimization step: 4846. Total energy = 835.9893 kcal/mol (833.8336 without restraints) Performing minimization step: 4847. Total energy = 835.9850 kcal/mol (833.8299 without restraints) Performing minimization step: 4848. Total energy = 835.9790 kcal/mol (833.8228 without restraints) Performing minimization step: 4849. Total energy = 835.9742 kcal/mol (833.8185 without restraints) Performing minimization step: 4850. Total energy = 835.9683 kcal/mol (833.8120 without restraints) Performing minimization step: 4851. Total energy = 835.9638 kcal/mol (833.8078 without restraints) Performing minimization step: 4852. Total energy = 835.9578 kcal/mol (833.8011 without restraints) Performing minimization step: 4853. Total energy = 835.9534 kcal/mol (833.7972 without restraints) Performing minimization step: 4854. Total energy = 835.9472 kcal/mol (833.7903 without restraints) Performing minimization step: 4855. Total energy = 835.9430 kcal/mol (833.7866 without restraints) Performing minimization step: 4856. Total energy = 835.9368 kcal/mol (833.7797 without restraints) Performing minimization step: 4857. Total energy = 835.9324 kcal/mol (833.7756 without restraints) Performing minimization step: 4858. Total energy = 835.9262 kcal/mol (833.7689 without restraints) Performing minimization step: 4859. Total energy = 835.9217 kcal/mol (833.7646 without restraints) Performing minimization step: 4860. Total energy = 835.9155 kcal/mol (833.7579 without restraints) Performing minimization step: 4861. Total energy = 835.9112 kcal/mol (833.7538 without restraints) Performing minimization step: 4862. Total energy = 835.9050 kcal/mol (833.7471 without restraints) Performing minimization step: 4863. Total energy = 835.9008 kcal/mol (833.7432 without restraints) Performing minimization step: 4864. Total energy = 835.8946 kcal/mol (833.7365 without restraints) Performing minimization step: 4865. Total energy = 835.8903 kcal/mol (833.7325 without restraints) Performing minimization step: 4866. Total energy = 835.8841 kcal/mol (833.7258 without restraints) Performing minimization step: 4867. Total energy = 835.8799 kcal/mol (833.7218 without restraints) Performing minimization step: 4868. Total energy = 835.8737 kcal/mol (833.7152 without restraints) Performing minimization step: 4869. Total energy = 835.8694 kcal/mol (833.7111 without restraints) Performing minimization step: 4870. Total energy = 835.8632 kcal/mol (833.7044 without restraints) Performing minimization step: 4871. Total energy = 835.8589 kcal/mol (833.7004 without restraints) Performing minimization step: 4872. Total energy = 835.8523 kcal/mol (833.6933 without restraints) Performing minimization step: 4873. Total energy = 835.8481 kcal/mol (833.6892 without restraints) Performing minimization step: 4874. Total energy = 835.8419 kcal/mol (833.6826 without restraints) Performing minimization step: 4875. Total energy = 835.8380 kcal/mol (833.6789 without restraints) Performing minimization step: 4876. Total energy = 835.8320 kcal/mol (833.6725 without restraints) Performing minimization step: 4877. Total energy = 835.8277 kcal/mol (833.6683 without restraints) Performing minimization step: 4878. Total energy = 835.8220 kcal/mol (833.6623 without restraints) Performing minimization step: 4879. Total energy = 835.8176 kcal/mol (833.6580 without restraints) Performing minimization step: 4880. Total energy = 835.8122 kcal/mol (833.6523 without restraints) Performing minimization step: 4881. Total energy = 835.8072 kcal/mol (833.6467 without restraints) Performing minimization step: 4882. Total energy = 835.8032 kcal/mol (833.6428 without restraints) Performing minimization step: 4883. Total energy = 835.7986 kcal/mol (833.6387 without restraints) Performing minimization step: 4884. Total energy = 835.7923 kcal/mol (833.6319 without restraints) Performing minimization step: 4885. Total energy = 835.7882 kcal/mol (833.6281 without restraints) Performing minimization step: 4886. Total energy = 835.7824 kcal/mol (833.6217 without restraints) Performing minimization step: 4887. Total energy = 835.7781 kcal/mol (833.6175 without restraints) Performing minimization step: 4888. Total energy = 835.7730 kcal/mol (833.6123 without restraints) Performing minimization step: 4889. Total energy = 835.7688 kcal/mol (833.6083 without restraints) Performing minimization step: 4890. Total energy = 835.7638 kcal/mol (833.6028 without restraints) Performing minimization step: 4891. Total energy = 835.7596 kcal/mol (833.5988 without restraints) Performing minimization step: 4892. Total energy = 835.7545 kcal/mol (833.5933 without restraints) Performing minimization step: 4893. Total energy = 835.7504 kcal/mol (833.5893 without restraints) Performing minimization step: 4894. Total energy = 835.7453 kcal/mol (833.5839 without restraints) Performing minimization step: 4895. Total energy = 835.7411 kcal/mol (833.5799 without restraints) Performing minimization step: 4896. Total energy = 835.7360 kcal/mol (833.5744 without restraints) Performing minimization step: 4897. Total energy = 835.7319 kcal/mol (833.5705 without restraints) Performing minimization step: 4898. Total energy = 835.7269 kcal/mol (833.5650 without restraints) Performing minimization step: 4899. Total energy = 835.7224 kcal/mol (833.5606 without restraints) Performing minimization step: 4900. Total energy = 835.7174 kcal/mol (833.5554 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 835.7132 kcal/mol (833.5512 without restraints) Performing minimization step: 4902. Total energy = 835.7083 kcal/mol (833.5460 without restraints) Performing minimization step: 4903. Total energy = 835.7043 kcal/mol (833.5420 without restraints) Performing minimization step: 4904. Total energy = 835.6993 kcal/mol (833.5368 without restraints) Performing minimization step: 4905. Total energy = 835.6954 kcal/mol (833.5333 without restraints) Performing minimization step: 4906. Total energy = 835.6896 kcal/mol (833.5267 without restraints) Performing minimization step: 4907. Total energy = 835.6854 kcal/mol (833.5228 without restraints) Performing minimization step: 4908. Total energy = 835.6797 kcal/mol (833.5166 without restraints) Performing minimization step: 4909. Total energy = 835.6753 kcal/mol (833.5123 without restraints) Performing minimization step: 4910. Total energy = 835.6698 kcal/mol (833.5060 without restraints) Performing minimization step: 4911. Total energy = 835.6628 kcal/mol (833.4984 without restraints) Performing minimization step: 4912. Total energy = 835.6580 kcal/mol (833.4942 without restraints) Performing minimization step: 4913. Total energy = 835.6533 kcal/mol (833.4897 without restraints) Performing minimization step: 4914. Total energy = 835.6473 kcal/mol (833.4836 without restraints) Performing minimization step: 4915. Total energy = 835.6431 kcal/mol (833.4793 without restraints) Performing minimization step: 4916. Total energy = 835.6380 kcal/mol (833.4741 without restraints) Performing minimization step: 4917. Total energy = 835.6333 kcal/mol (833.4688 without restraints) Performing minimization step: 4918. Total energy = 835.6292 kcal/mol (833.4646 without restraints) Performing minimization step: 4919. Total energy = 835.6250 kcal/mol (833.4610 without restraints) Performing minimization step: 4920. Total energy = 835.6187 kcal/mol (833.4541 without restraints) Performing minimization step: 4921. Total energy = 835.6147 kcal/mol (833.4502 without restraints) Performing minimization step: 4922. Total energy = 835.6097 kcal/mol (833.4451 without restraints) Performing minimization step: 4923. Total energy = 835.6050 kcal/mol (833.4399 without restraints) Performing minimization step: 4924. Total energy = 835.6012 kcal/mol (833.4360 without restraints) Performing minimization step: 4925. Total energy = 835.5971 kcal/mol (833.4324 without restraints) Performing minimization step: 4926. Total energy = 835.5909 kcal/mol (833.4256 without restraints) Performing minimization step: 4927. Total energy = 835.5869 kcal/mol (833.4216 without restraints) Performing minimization step: 4928. Total energy = 835.5819 kcal/mol (833.4166 without restraints) Performing minimization step: 4929. Total energy = 835.5772 kcal/mol (833.4114 without restraints) Performing minimization step: 4930. Total energy = 835.5730 kcal/mol (833.4071 without restraints) Performing minimization step: 4931. Total energy = 835.5689 kcal/mol (833.4035 without restraints) Performing minimization step: 4932. Total energy = 835.5629 kcal/mol (833.3969 without restraints) Performing minimization step: 4933. Total energy = 835.5587 kcal/mol (833.3928 without restraints) Performing minimization step: 4934. Total energy = 835.5538 kcal/mol (833.3878 without restraints) Performing minimization step: 4935. Total energy = 835.5491 kcal/mol (833.3826 without restraints) Performing minimization step: 4936. Total energy = 835.5454 kcal/mol (833.3789 without restraints) Performing minimization step: 4937. Total energy = 835.5412 kcal/mol (833.3751 without restraints) Performing minimization step: 4938. Total energy = 835.5355 kcal/mol (833.3689 without restraints) Performing minimization step: 4939. Total energy = 835.5313 kcal/mol (833.3647 without restraints) Performing minimization step: 4940. Total energy = 835.5264 kcal/mol (833.3597 without restraints) Performing minimization step: 4941. Total energy = 835.5217 kcal/mol (833.3544 without restraints) Performing minimization step: 4942. Total energy = 835.5180 kcal/mol (833.3507 without restraints) Performing minimization step: 4943. Total energy = 835.5137 kcal/mol (833.3467 without restraints) Performing minimization step: 4944. Total energy = 835.5079 kcal/mol (833.3405 without restraints) Performing minimization step: 4945. Total energy = 835.5036 kcal/mol (833.3363 without restraints) Performing minimization step: 4946. Total energy = 835.4985 kcal/mol (833.3312 without restraints) Performing minimization step: 4947. Total energy = 835.4935 kcal/mol (833.3254 without restraints) Performing minimization step: 4948. Total energy = 835.4895 kcal/mol (833.3215 without restraints) Performing minimization step: 4949. Total energy = 835.4854 kcal/mol (833.3180 without restraints) Performing minimization step: 4950. Total energy = 835.4794 kcal/mol (833.3114 without restraints) Performing minimization step: 4951. Total energy = 835.4754 kcal/mol (833.3075 without restraints) Performing minimization step: 4952. Total energy = 835.4704 kcal/mol (833.3023 without restraints) Performing minimization step: 4953. Total energy = 835.4657 kcal/mol (833.2971 without restraints) Performing minimization step: 4954. Total energy = 835.4620 kcal/mol (833.2933 without restraints) Performing minimization step: 4955. Total energy = 835.4578 kcal/mol (833.2895 without restraints) Performing minimization step: 4956. Total energy = 835.4521 kcal/mol (833.2835 without restraints) Performing minimization step: 4957. Total energy = 835.4482 kcal/mol (833.2797 without restraints) Performing minimization step: 4958. Total energy = 835.4431 kcal/mol (833.2742 without restraints) Performing minimization step: 4959. Total energy = 835.4385 kcal/mol (833.2693 without restraints) Performing minimization step: 4960. Total energy = 835.4348 kcal/mol (833.2654 without restraints) Performing minimization step: 4961. Total energy = 835.4309 kcal/mol (833.2619 without restraints) Performing minimization step: 4962. Total energy = 835.4250 kcal/mol (833.2557 without restraints) Performing minimization step: 4963. Total energy = 835.4213 kcal/mol (833.2521 without restraints) Performing minimization step: 4964. Total energy = 835.4162 kcal/mol (833.2466 without restraints) Performing minimization step: 4965. Total energy = 835.4118 kcal/mol (833.2419 without restraints) Performing minimization step: 4966. Total energy = 835.4081 kcal/mol (833.2381 without restraints) Performing minimization step: 4967. Total energy = 835.4040 kcal/mol (833.2344 without restraints) Performing minimization step: 4968. Total energy = 835.3984 kcal/mol (833.2284 without restraints) Performing minimization step: 4969. Total energy = 835.3940 kcal/mol (833.2236 without restraints) Performing minimization step: 4970. Total energy = 835.3903 kcal/mol (833.2197 without restraints) Performing minimization step: 4971. Total energy = 835.3860 kcal/mol (833.2159 without restraints) Performing minimization step: 4972. Total energy = 835.3803 kcal/mol (833.2098 without restraints) Performing minimization step: 4973. Total energy = 835.3767 kcal/mol (833.2069 without restraints) Performing minimization step: 4974. Total energy = 835.3704 kcal/mol (833.1996 without restraints) Performing minimization step: 4975. Total energy = 835.3666 kcal/mol (833.1960 without restraints) Performing minimization step: 4976. Total energy = 835.3608 kcal/mol (833.1899 without restraints) Performing minimization step: 4977. Total energy = 835.3568 kcal/mol (833.1853 without restraints) Performing minimization step: 4978. Total energy = 835.3530 kcal/mol (833.1815 without restraints) Performing minimization step: 4979. Total energy = 835.3489 kcal/mol (833.1779 without restraints) Performing minimization step: 4980. Total energy = 835.3433 kcal/mol (833.1719 without restraints) Performing minimization step: 4981. Total energy = 835.3388 kcal/mol (833.1669 without restraints) Performing minimization step: 4982. Total energy = 835.3350 kcal/mol (833.1631 without restraints) Performing minimization step: 4983. Total energy = 835.3308 kcal/mol (833.1593 without restraints) Performing minimization step: 4984. Total energy = 835.3251 kcal/mol (833.1532 without restraints) Performing minimization step: 4985. Total energy = 835.3206 kcal/mol (833.1483 without restraints) Performing minimization step: 4986. Total energy = 835.3168 kcal/mol (833.1445 without restraints) Performing minimization step: 4987. Total energy = 835.3127 kcal/mol (833.1408 without restraints) Performing minimization step: 4988. Total energy = 835.3068 kcal/mol (833.1342 without restraints) Performing minimization step: 4989. Total energy = 835.3021 kcal/mol (833.1293 without restraints) Performing minimization step: 4990. Total energy = 835.2983 kcal/mol (833.1255 without restraints) Performing minimization step: 4991. Total energy = 835.2944 kcal/mol (833.1220 without restraints) Performing minimization step: 4992. Total energy = 835.2887 kcal/mol (833.1159 without restraints) Performing minimization step: 4993. Total energy = 835.2843 kcal/mol (833.1110 without restraints) Performing minimization step: 4994. Total energy = 835.2803 kcal/mol (833.1069 without restraints) Performing minimization step: 4995. Total energy = 835.2763 kcal/mol (833.1034 without restraints) Performing minimization step: 4996. Total energy = 835.2706 kcal/mol (833.0973 without restraints) Performing minimization step: 4997. Total energy = 835.2665 kcal/mol (833.0928 without restraints) Performing minimization step: 4998. Total energy = 835.2627 kcal/mol (833.0889 without restraints) Performing minimization step: 4999. Total energy = 835.2587 kcal/mol (833.0851 without restraints) Performing minimization step: 5000. Total energy = 835.2539 kcal/mol (833.0803 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03598f44/tmp/r01_TT_done_refx/r01_TT_done_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to r01_TT_done_refx.pdb DONE!