============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 735 'H5' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 1H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 740 2H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 768 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 772 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 773 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 800 'H5' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 804 1H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 805 2H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 830 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 835 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 860 'H5' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 864 1H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 865 2H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 890 'H5' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 894 1H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 895 2H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 922 'H5' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 926 1H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 927 2H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 952 'H5' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 956 1H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 957 2H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 984 'H5' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 988 1H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 989 2H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1016 'H5' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1020 1H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1021 2H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1043 C5M DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1047 HN3 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1048 1HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1049 2HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1050 3HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1072 C5M DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1076 HN3 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1077 1HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1078 2HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1079 3HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1101 C5M DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1105 HN3 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1106 1HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1107 2HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1108 3HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1135 'H5' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1139 1H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1140 2H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1165 'H5' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1169 1H2' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1170 2H2' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1198 'H5' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1202 1H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1203 2H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1228 'H5' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1232 1H2' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1233 2H2' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1261 'H5' DG A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1265 1H2' DG A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1266 2H2' DG A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1294 'H5' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1298 1H2' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1299 2H2' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1324 'H5' DC A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1328 1H2' DC A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1329 2H2' DC A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1356 'H5' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1360 1H2' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1361 2H2' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1388 'H5' DA A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1392 1H2' DA A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1393 2H2' DA A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1415 C5M DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1419 HN3 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1420 1HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1421 2HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1422 3HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1450 'H5' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1454 1H2' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1455 2H2' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1480 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1484 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1485 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1513 'H5' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1517 1H2' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1518 2H2' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1540 C5M DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1544 HN3 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1545 1HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1546 2HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1547 3HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1574 'H5' DA A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1578 1H2' DA A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1579 2H2' DA A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1607 'H5' DG A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1611 1H2' DG A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1612 2H2' DG A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1637 'H5' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1641 1H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1642 2H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1667 'H5' DC A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1671 1H2' DC A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1672 2H2' DC A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1697 'H5' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1701 1H2' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1702 2H2' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1724 C5M DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1728 HN3 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1729 1HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1730 2HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1731 3HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1758 'H5' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1762 1H2' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1763 2H2' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1791 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1795 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1796 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1821 'H5' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1825 1H2' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1826 2H2' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1848 C5M DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1852 HN3 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1853 1HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1854 2HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1855 3HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1880 'H5' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1884 1H2' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1885 2H2' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1912 'H5' DA A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1916 1H2' DA A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1917 2H2' DA A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1945 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1949 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1950 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1978 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1982 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1983 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2005 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2009 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2010 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2011 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2012 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2037 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2041 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2042 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2070 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2074 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2075 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2102 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2106 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2107 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2132 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2136 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2137 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2165 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2169 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2170 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2197 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2201 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2202 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2230 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2234 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2235 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2263 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2267 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2268 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2290 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2294 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2295 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2296 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2297 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2322 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2326 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2327 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2349 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2353 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2354 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2355 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2356 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2383 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2387 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2388 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2416 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2420 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2421 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2448 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2452 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2453 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2480 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2484 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2485 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2507 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2511 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2512 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2513 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2514 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2541 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2545 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2546 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2571 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2575 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2576 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2601 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2605 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2606 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2633 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2637 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2638 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2666 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2667 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2671 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2672 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.400 0.753 -2.555 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.934 -0.787 -0.578 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.161 -0.110 3.785 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.164 -0.167 3.846 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.290 -4.075 4.531 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.560 -3.071 6.734 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.298 -4.641 7.484 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -6.936 -1.010 4.629 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.659 -2.007 1.585 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.569 -1.023 1.124 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.360 -2.613 1.006 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.683 -2.494 1.588 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -3.775 -7.869 7.450 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.662 -6.790 9.192 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.402 -7.043 7.352 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -9.229 -10.754 7.706 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.244 -9.136 7.046 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -12.910 -9.535 5.116 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -14.532 -13.273 4.636 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -17.052 -11.700 1.288 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.332 -11.858 0.283 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -16.696 -15.367 -0.797 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -17.535 -14.060 -4.914 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -15.593 -14.465 -5.169 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -16.387 -18.045 -6.027 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -12.484 -16.522 -8.120 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -12.852 -17.732 -9.342 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -9.125 -14.538 -5.743 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -11.638 -17.266 -3.016 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -11.729 -16.545 -2.204 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -10.788 -17.924 -2.820 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -12.548 -17.865 -3.069 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -12.197 -20.612 -10.807 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -8.298 -19.738 -12.583 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -7.668 -20.402 -10.806 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -7.353 -23.926 -12.169 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -3.149 -22.968 -11.659 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -3.367 -23.674 -9.801 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -2.315 -27.224 -10.603 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 0.916 -26.304 -7.811 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -0.302 -26.992 -6.383 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 0.719 -30.689 -6.682 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 -0.649 -29.285 -2.417 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 0.218 -30.700 -1.835 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -4.506 -27.859 -1.249 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -4.582 -29.084 -5.710 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -5.209 -28.255 -6.047 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -5.216 -29.954 -5.516 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -3.870 -29.334 -6.499 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 0.780 -34.064 -1.054 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 -2.371 -33.072 2.224 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 -1.824 -34.577 2.952 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -6.297 -31.287 1.205 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -4.086 -32.215 -2.702 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -4.164 -31.233 -3.169 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -4.907 -32.847 -3.048 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -3.138 -32.674 -2.984 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 -2.254 -38.103 3.013 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -5.861 -37.436 5.536 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -6.862 -37.730 3.831 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -7.203 -41.598 4.378 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -11.528 -40.528 4.876 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -11.589 -40.575 2.879 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -12.838 -44.511 2.866 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -16.531 -43.368 0.600 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -15.288 -43.469 -0.963 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -16.581 -47.065 -1.340 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -18.649 -45.966 -5.046 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -16.911 -46.504 -5.874 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -17.722 -49.992 -6.578 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -16.861 -48.729 -10.639 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -15.015 -49.411 -10.288 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -15.650 -52.922 -11.588 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -12.730 -51.642 -14.559 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -11.353 -52.297 -13.267 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -11.377 -56.196 -14.796 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -7.301 -55.750 -16.075 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -6.826 -56.320 -14.219 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -6.542 -60.065 -14.788 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -2.501 -59.417 -13.568 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -3.113 -59.726 -11.690 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 -1.966 -63.338 -11.820 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 0.346 -61.846 -8.252 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 -1.314 -62.190 -7.193 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 0.725 -65.449 -6.466 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 0.881 -63.107 -2.509 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 -1.001 -63.700 -2.189 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 0.830 -67.043 -0.348 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -0.829 -65.624 3.513 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 -2.379 -66.775 2.994 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 24 -2.331 -70.545 3.810 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 24 -4.115 -69.695 7.485 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 24 -5.286 -70.765 6.269 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 -5.763 -74.062 6.965 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -8.776 -74.374 8.740 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -9.143 -75.054 6.896 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 26 -9.678 -78.839 7.235 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 26 -13.511 -79.353 5.634 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 26 -12.430 -79.328 3.953 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 -12.587 -83.472 4.469 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 -14.858 -83.715 0.568 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 -13.068 -83.508 -0.297 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 28 -14.605 -87.893 0.110 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 28 -14.086 -87.808 -4.503 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 28 -12.108 -87.734 -4.228 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 29 -12.482 -91.542 -4.754 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 29 -11.206 -91.803 -8.909 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 29 -9.391 -91.719 -8.076 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 30 -9.493 -95.618 -8.223 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 30 -6.331 -94.565 -11.271 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 30 -5.072 -94.343 -9.734 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 31 -4.379 -99.053 -10.277 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 31 -0.610 -96.570 -11.632 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 31 -0.169 -96.259 -9.707 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 32 2.299 -99.989 -10.389 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 32 5.100 -96.218 -10.294 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 32 4.878 -96.250 -8.307 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 33 8.527 -98.449 -8.819 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 33 9.515 -94.240 -7.045 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 33 8.991 -94.958 -5.254 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 34 13.467 -96.032 -6.014 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 34 11.755 -93.296 -2.228 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 34 13.420 -92.844 -1.881 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 34 8.178 -94.099 0.247 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 34 9.710 -97.980 -1.736 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 34 8.743 -98.351 -2.089 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 34 9.925 -98.434 -0.761 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 34 10.484 -98.294 -2.444 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 35 17.221 -93.433 -1.091 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 35 13.613 -92.032 2.122 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 35 14.824 -91.212 3.100 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 35 11.315 -94.624 4.494 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 35 12.045 -96.829 0.555 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 35 11.010 -96.941 0.224 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 35 12.335 -97.720 1.121 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 35 12.690 -96.742 -0.322 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 36 18.416 -89.585 3.721 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 36 17.941 -91.782 6.283 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 36 17.541 -91.187 7.889 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 36 13.002 -92.744 9.515 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 36 14.403 -94.960 5.719 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 36 13.435 -95.069 5.228 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 36 14.607 -95.855 6.312 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 36 15.179 -94.851 4.960 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 37 16.021 -86.689 6.162 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 37 16.340 -84.227 2.267 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 37 14.390 -84.545 2.571 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 38 12.591 -82.152 7.241 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 38 10.941 -84.669 7.875 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 38 12.787 -84.995 8.571 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 39 10.314 -80.043 8.141 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 39 11.307 -76.099 6.256 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 39 9.764 -76.853 5.232 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 40 6.081 -75.502 8.998 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 40 3.931 -78.561 7.920 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 40 5.344 -78.912 9.289 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 41 0.888 -74.273 11.106 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 41 -2.528 -74.572 11.625 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 41 -2.239 -76.277 10.621 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 42 -0.653 -76.867 16.202 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 42 -4.393 -78.778 16.056 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 42 -3.490 -80.127 14.889 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 43 1.794 -78.341 17.758 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 43 3.979 -82.728 16.616 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 43 2.325 -83.186 15.592 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 44 3.312 -81.694 11.695 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 44 1.270 -85.017 9.853 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 44 -0.411 -83.938 9.775 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 45 1.346 -82.640 5.764 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 45 -2.217 -84.267 3.858 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 45 -3.098 -82.497 4.151 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 46 0.079 -82.465 1.994 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 46 -4.243 -80.016 1.281 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 46 -4.835 -81.232 0.156 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 46 -3.489 -76.063 3.672 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 46 -1.395 -76.345 -0.363 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 46 -0.528 -75.783 -0.052 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 46 -2.115 -75.706 -0.855 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 46 -1.114 -77.169 -0.999 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 47 -0.528 -84.523 0.277 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 47 1.450 -88.183 1.681 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 47 2.702 -86.690 2.130 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 0.989 -88.279 6.118 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 4.454 -86.257 5.831 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 2.834 -85.085 5.865 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 49 4.592 -89.205 8.743 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 49 4.067 -93.595 10.310 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 49 5.927 -93.383 9.610 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 50 8.014 -90.618 13.813 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 50 8.092 -89.419 11.047 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 50 9.460 -88.325 10.880 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 50 11.642 -90.288 6.853 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 50 8.586 -93.389 8.307 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 50 9.164 -94.272 8.078 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 50 7.921 -93.140 7.491 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 50 8.032 -93.519 9.225 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 51 11.336 -89.543 15.190 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 51 12.173 -92.230 15.637 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 51 13.568 -90.832 15.328 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 52 13.462 -87.756 20.203 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 52 16.917 -85.081 18.678 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 52 15.796 -84.776 17.051 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 53 14.391 -81.399 19.851 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 53 18.065 -79.109 18.031 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 53 17.067 -79.212 16.302 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 54 15.421 -75.447 17.569 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 54 18.546 -72.949 15.683 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 54 17.736 -73.624 13.985 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 55 15.273 -70.155 14.532 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 55 18.203 -67.589 12.341 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 55 17.570 -68.659 10.775 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 56 14.378 -65.438 11.254 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 56 16.321 -66.026 7.098 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 56 15.630 -64.464 6.673 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 56 16.869 -69.473 4.626 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 56 14.390 -70.596 8.306 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 56 14.995 -71.429 8.652 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 56 13.592 -70.960 7.663 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 56 13.968 -70.067 9.155 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 57 12.861 -62.416 5.551 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 57 14.626 -63.042 1.512 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 57 13.492 -64.682 1.367 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 10.748 -62.066 -0.493 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 12.316 -65.041 -3.693 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 10.975 -66.365 -3.025 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 59 8.965 -64.515 -6.235 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 59 9.722 -69.053 -7.239 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 59 8.074 -69.518 -6.207 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 60 6.498 -68.384 -10.358 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 60 5.908 -72.425 -7.475 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 60 5.546 -73.437 -8.867 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 60 3.783 -73.321 -4.036 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 60 3.408 -68.814 -4.965 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 60 3.517 -68.508 -3.921 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 60 2.340 -68.873 -5.205 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 60 3.868 -68.056 -5.604 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 61 4.162 -74.682 -11.797 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 61 3.459 -77.699 -8.058 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 61 1.617 -76.937 -7.912 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 62 1.126 -80.353 -10.862 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 62 -1.350 -82.161 -7.749 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 62 -2.850 -81.135 -8.582 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -4.085 -81.341 -12.931 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 -8.448 -81.727 -12.660 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 -8.306 -81.155 -10.749 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -8.885 -77.657 -12.546 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -12.738 -78.923 -10.153 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -11.999 -77.982 -8.552 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 -12.146 -74.776 -7.835 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 -13.681 -76.206 -4.434 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 -15.123 -75.204 -4.334 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 -10.223 -77.280 -1.868 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 -8.968 -74.203 -5.048 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 -8.052 -74.696 -5.348 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 -8.764 -73.463 -4.281 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 -9.443 -73.736 -5.902 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -14.402 -70.906 -3.781 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -16.338 -71.765 -0.459 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -14.707 -70.653 -0.144 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -17.128 -66.434 0.124 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -15.308 -65.794 4.126 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -13.665 -65.226 3.139 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -14.732 -61.680 3.649 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -11.261 -61.039 6.300 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -10.339 -60.649 4.569 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -10.914 -56.784 4.879 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -6.535 -56.600 4.018 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -7.004 -56.693 2.077 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -6.968 -52.876 1.864 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -3.236 -53.277 -0.505 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -4.476 -53.452 -2.063 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -7.287 -47.805 -0.013 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -6.976 -44.700 2.505 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -5.069 -45.280 2.342 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -3.886 -42.468 0.149 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -0.303 -42.169 2.360 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 0.445 -43.602 1.182 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 1.837 -41.202 -1.187 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 5.265 -42.289 1.258 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 5.474 -43.787 -0.049 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 7.994 -41.456 -1.583 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 9.954 -45.305 -2.388 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 11.387 -44.343 -2.728 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 7.874 -48.589 -4.671 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 4.813 -45.391 -3.589 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 4.116 -45.977 -2.982 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 4.460 -45.391 -4.627 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 4.817 -44.360 -3.222 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 13.197 -42.724 -5.088 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 14.646 -46.522 -6.892 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 13.102 -46.261 -8.135 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 15.018 -43.580 -10.960 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 11.084 -46.100 -12.167 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 11.460 -45.762 -13.852 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 7.111 -45.739 -11.775 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 9.318 -42.725 -9.020 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 8.729 -42.936 -8.122 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 8.877 -41.863 -9.535 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 10.337 -42.465 -8.717 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 11.957 -42.633 -14.762 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 13.259 -42.965 -18.339 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 13.549 -44.640 -17.287 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 7.859 -44.105 -17.779 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 6.072 -47.433 -18.278 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 6.295 -46.779 -16.402 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 1.868 -44.415 -15.749 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 0.741 -42.737 -13.825 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -0.471 -44.318 -13.994 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 1.417 -48.895 -12.833 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 2.160 -51.906 -15.819 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 3.928 -51.784 -14.894 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 2.315 -54.677 -12.393 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 7.242 -53.897 -11.746 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 7.297 -55.494 -11.011 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 5.104 -49.255 -11.878 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 9.004 -50.084 -9.610 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 8.674 -49.865 -8.597 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 9.443 -49.189 -10.053 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 9.747 -50.879 -9.588 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 7.494 -57.891 -8.449 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 11.277 -55.580 -7.102 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 10.098 -54.573 -5.839 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 8.869 -55.199 -3.110 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 10.953 -52.201 -1.564 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 9.016 -51.878 -1.194 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 8.689 -52.429 2.478 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 9.328 -48.878 4.261 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 7.428 -49.489 4.388 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 8.617 -50.856 8.642 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 5.933 -47.057 9.137 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 4.364 -48.257 8.829 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 3.998 -48.091 12.712 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -0.193 -46.669 11.326 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -0.757 -48.566 11.045 1.00 0.00 H Number of atoms: 2721 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2938 Number of angles built: 5328 Number of dihedrals built: 7959 Number of impropers built: 583 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3692294 Number of van der Waals pairs: 304874 Number of H-bonds built: 34 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 7 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 234447.1748 kcal/mol (233646.0862 without restraints) Performing minimization step: 2. Total energy = 227901.6029 kcal/mol (227141.9616 without restraints) Performing minimization step: 3. Total energy = 221693.9079 kcal/mol (220972.6165 without restraints) Performing minimization step: 4. Total energy = 215799.1128 kcal/mol (215113.3683 without restraints) Performing minimization step: 5. Total energy = 210194.5856 kcal/mol (209541.8449 without restraints) Performing minimization step: 6. Total energy = 204859.7735 kcal/mol (204237.7247 without restraints) Performing minimization step: 7. Total energy = 199775.9716 kcal/mol (199182.5085 without restraints) Performing minimization step: 8. Total energy = 194926.1247 kcal/mol (194359.3247 without restraints) Performing minimization step: 9. Total energy = 190294.6508 kcal/mol (189752.7561 without restraints) Performing minimization step: 10. Total energy = 185867.2903 kcal/mol (185348.6907 without restraints) Performing minimization step: 11. Total energy = 181630.9712 kcal/mol (181134.1894 without restraints) Performing minimization step: 12. Total energy = 177573.6909 kcal/mol (177097.3694 without restraints) Performing minimization step: 13. Total energy = 173684.4125 kcal/mol (173227.3020 without restraints) Performing minimization step: 14. Total energy = 169952.9704 kcal/mol (169513.9194 without restraints) Performing minimization step: 15. Total energy = 166369.9890 kcal/mol (165947.9348 without restraints) Performing minimization step: 16. Total energy = 162926.8093 kcal/mol (162520.7695 without restraints) Performing minimization step: 17. Total energy = 159615.4223 kcal/mol (159224.4877 without restraints) Performing minimization step: 18. Total energy = 156428.4112 kcal/mol (156051.7396 without restraints) Performing minimization step: 19. Total energy = 153358.8980 kcal/mol (152995.7074 without restraints) Performing minimization step: 20. Total energy = 150400.4965 kcal/mol (150050.0607 without restraints) Performing minimization step: 21. Total energy = 147547.2697 kcal/mol (147208.9129 without restraints) Performing minimization step: 22. Total energy = 144793.6917 kcal/mol (144466.7847 without restraints) Performing minimization step: 23. Total energy = 142134.6133 kcal/mol (141818.5694 without restraints) Performing minimization step: 24. Total energy = 139565.2306 kcal/mol (139259.5019 without restraints) Performing minimization step: 25. Total energy = 137081.0572 kcal/mol (136785.1321 without restraints) Performing minimization step: 26. Total energy = 134677.8990 kcal/mol (134391.2989 without restraints) Performing minimization step: 27. Total energy = 132351.8309 kcal/mol (132074.1075 without restraints) Performing minimization step: 28. Total energy = 130099.1761 kcal/mol (129829.9095 without restraints) Performing minimization step: 29. Total energy = 127916.4872 kcal/mol (127655.2833 without restraints) Performing minimization step: 30. Total energy = 125800.5289 kcal/mol (125547.0177 without restraints) Performing minimization step: 31. Total energy = 123748.2623 kcal/mol (123502.0963 without restraints) Performing minimization step: 32. Total energy = 121756.8310 kcal/mol (121517.6833 without restraints) Performing minimization step: 33. Total energy = 119823.5474 kcal/mol (119591.1101 without restraints) Performing minimization step: 34. Total energy = 117945.8810 kcal/mol (117719.8646 without restraints) Performing minimization step: 35. Total energy = 116121.4480 kcal/mol (115901.5792 without restraints) Performing minimization step: 36. Total energy = 114348.0006 kcal/mol (114134.0217 without restraints) Performing minimization step: 37. Total energy = 112623.4176 kcal/mol (112415.0856 without restraints) Performing minimization step: 38. Total energy = 110945.6968 kcal/mol (110742.7821 without restraints) Performing minimization step: 39. Total energy = 109312.9463 kcal/mol (109115.2317 without restraints) Performing minimization step: 40. Total energy = 107723.3775 kcal/mol (107530.6577 without restraints) Performing minimization step: 41. Total energy = 106175.2987 kcal/mol (105987.3796 without restraints) Performing minimization step: 42. Total energy = 104667.1084 kcal/mol (104483.8062 without restraints) Performing minimization step: 43. Total energy = 103197.2901 kcal/mol (103018.4304 without restraints) Performing minimization step: 44. Total energy = 101764.4063 kcal/mol (101589.8240 without restraints) Performing minimization step: 45. Total energy = 100367.0941 kcal/mol (100196.6326 without restraints) Performing minimization step: 46. Total energy = 99004.0603 kcal/mol (98837.5707 without restraints) Performing minimization step: 47. Total energy = 97674.0778 kcal/mol (97511.4194 without restraints) Performing minimization step: 48. Total energy = 96375.9801 kcal/mol (96217.0184 without restraints) Performing minimization step: 49. Total energy = 95108.6589 kcal/mol (94953.2665 without restraints) Performing minimization step: 50. Total energy = 93871.0602 kcal/mol (93719.1158 without restraints) Performing minimization step: 51. Total energy = 92662.1811 kcal/mol (92513.5691 without restraints) Performing minimization step: 52. Total energy = 91481.0667 kcal/mol (91335.6772 without restraints) Performing minimization step: 53. Total energy = 90326.8072 kcal/mol (90184.5353 without restraints) Performing minimization step: 54. Total energy = 89198.5353 kcal/mol (89059.2811 without restraints) Performing minimization step: 55. Total energy = 88095.4239 kcal/mol (87959.0921 without restraints) Performing minimization step: 56. Total energy = 87016.6834 kcal/mol (86883.1829 without restraints) Performing minimization step: 57. Total energy = 85961.5603 kcal/mol (85830.8042 without restraints) Performing minimization step: 58. Total energy = 84929.3336 kcal/mol (84801.2387 without restraints) Performing minimization step: 59. Total energy = 83919.3150 kcal/mol (83793.8019 without restraints) Performing minimization step: 60. Total energy = 82930.8452 kcal/mol (82807.8377 without restraints) Performing minimization step: 61. Total energy = 81963.2934 kcal/mol (81842.7188 without restraints) Performing minimization step: 62. Total energy = 81016.0556 kcal/mol (80897.8440 without restraints) Performing minimization step: 63. Total energy = 80088.5528 kcal/mol (79972.6374 without restraints) Performing minimization step: 64. Total energy = 79180.2294 kcal/mol (79066.5457 without restraints) Performing minimization step: 65. Total energy = 78290.5524 kcal/mol (78179.0391 without restraints) Performing minimization step: 66. Total energy = 77419.0102 kcal/mol (77309.6080 without restraints) Performing minimization step: 67. Total energy = 76565.1115 kcal/mol (76457.7635 without restraints) Performing minimization step: 68. Total energy = 75728.3836 kcal/mol (75623.0351 without restraints) Performing minimization step: 69. Total energy = 74908.3723 kcal/mol (74804.9707 without restraints) Performing minimization step: 70. Total energy = 74104.6400 kcal/mol (74003.1347 without restraints) Performing minimization step: 71. Total energy = 73316.7655 kcal/mol (73217.1078 without restraints) Performing minimization step: 72. Total energy = 72544.3432 kcal/mol (72446.4860 without restraints) Performing minimization step: 73. Total energy = 71786.9818 kcal/mol (71690.8798 without restraints) Performing minimization step: 74. Total energy = 71044.3041 kcal/mol (70949.9135 without restraints) Performing minimization step: 75. Total energy = 70315.9461 kcal/mol (70223.2247 without restraints) Performing minimization step: 76. Total energy = 69601.5561 kcal/mol (69510.4632 without restraints) Performing minimization step: 77. Total energy = 68900.7946 kcal/mol (68811.2907 without restraints) Performing minimization step: 78. Total energy = 68213.3336 kcal/mol (68125.3806 without restraints) Performing minimization step: 79. Total energy = 67538.8554 kcal/mol (67452.4166 without restraints) Performing minimization step: 80. Total energy = 66877.0532 kcal/mol (66792.0929 without restraints) Performing minimization step: 81. Total energy = 66227.6298 kcal/mol (66144.1135 without restraints) Performing minimization step: 82. Total energy = 65590.2974 kcal/mol (65508.1916 without restraints) Performing minimization step: 83. Total energy = 64964.7773 kcal/mol (64884.0496 without restraints) Performing minimization step: 84. Total energy = 64350.7991 kcal/mol (64271.4183 without restraints) Performing minimization step: 85. Total energy = 63748.1009 kcal/mol (63670.0363 without restraints) Performing minimization step: 86. Total energy = 63156.4287 kcal/mol (63079.6509 without restraints) Performing minimization step: 87. Total energy = 62575.5361 kcal/mol (62500.0164 without restraints) Performing minimization step: 88. Total energy = 62005.1831 kcal/mol (61930.8937 without restraints) Performing minimization step: 89. Total energy = 61445.1376 kcal/mol (61372.0513 without restraints) Performing minimization step: 90. Total energy = 60895.1735 kcal/mol (60823.2641 without restraints) Performing minimization step: 91. Total energy = 60355.0712 kcal/mol (60284.3132 without restraints) Performing minimization step: 92. Total energy = 59824.6179 kcal/mol (59754.9867 without restraints) Performing minimization step: 93. Total energy = 59303.6057 kcal/mol (59235.0767 without restraints) Performing minimization step: 94. Total energy = 58791.8323 kcal/mol (58724.3822 without restraints) Performing minimization step: 95. Total energy = 58289.1016 kcal/mol (58222.7074 without restraints) Performing minimization step: 96. Total energy = 57795.2217 kcal/mol (57729.8613 without restraints) Performing minimization step: 97. Total energy = 57310.0074 kcal/mol (57245.6590 without restraints) Performing minimization step: 98. Total energy = 56833.2767 kcal/mol (56769.9192 without restraints) Performing minimization step: 99. Total energy = 56364.8530 kcal/mol (56302.4658 without restraints) Performing minimization step: 100. Total energy = 55904.5639 kcal/mol (55843.1270 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 101. Total energy = 55452.2416 kcal/mol (55391.7353 without restraints) Performing minimization step: 102. Total energy = 55007.7225 kcal/mol (54948.1278 without restraints) Performing minimization step: 103. Total energy = 54570.8467 kcal/mol (54512.1449 without restraints) Performing minimization step: 104. Total energy = 54141.4585 kcal/mol (54083.6315 without restraints) Performing minimization step: 105. Total energy = 53719.4063 kcal/mol (53662.4365 without restraints) Performing minimization step: 106. Total energy = 53304.5411 kcal/mol (53248.4111 without restraints) Performing minimization step: 107. Total energy = 52896.7185 kcal/mol (52841.4114 without restraints) Performing minimization step: 108. Total energy = 52495.7974 kcal/mol (52441.2968 without restraints) Performing minimization step: 109. Total energy = 52101.6393 kcal/mol (52047.9290 without restraints) Performing minimization step: 110. Total energy = 51714.1097 kcal/mol (51661.1740 without restraints) Performing minimization step: 111. Total energy = 51333.0769 kcal/mol (51280.9005 without restraints) Performing minimization step: 112. Total energy = 50958.4120 kcal/mol (50906.9798 without restraints) Performing minimization step: 113. Total energy = 50589.9897 kcal/mol (50539.2872 without restraints) Performing minimization step: 114. Total energy = 50227.6868 kcal/mol (50177.6995 without restraints) Performing minimization step: 115. Total energy = 49871.3833 kcal/mol (49822.0972 without restraints) Performing minimization step: 116. Total energy = 49520.9621 kcal/mol (49472.3636 without restraints) Performing minimization step: 117. Total energy = 49176.3081 kcal/mol (49128.3838 without restraints) Performing minimization step: 118. Total energy = 48837.3094 kcal/mol (48790.0460 without restraints) Performing minimization step: 119. Total energy = 48503.8558 kcal/mol (48457.2407 without restraints) Performing minimization step: 120. Total energy = 48175.8397 kcal/mol (48129.8603 without restraints) Performing minimization step: 121. Total energy = 47853.1565 kcal/mol (47807.8005 without restraints) Performing minimization step: 122. Total energy = 47535.7030 kcal/mol (47490.9586 without restraints) Performing minimization step: 123. Total energy = 47223.3790 kcal/mol (47179.2342 without restraints) Performing minimization step: 124. Total energy = 46916.0860 kcal/mol (46872.5293 without restraints) Performing minimization step: 125. Total energy = 46613.7270 kcal/mol (46570.7473 without restraints) Performing minimization step: 126. Total energy = 46316.2088 kcal/mol (46273.7950 without restraints) Performing minimization step: 127. Total energy = 46023.4389 kcal/mol (45981.5802 without restraints) Performing minimization step: 128. Total energy = 45735.3263 kcal/mol (45694.0122 without restraints) Performing minimization step: 129. Total energy = 45451.7828 kcal/mol (45411.0031 without restraints) Performing minimization step: 130. Total energy = 45172.7220 kcal/mol (45132.4664 without restraints) Performing minimization step: 131. Total energy = 44898.0588 kcal/mol (44858.3174 without restraints) Performing minimization step: 132. Total energy = 44627.7111 kcal/mol (44588.4744 without restraints) Performing minimization step: 133. Total energy = 44361.5958 kcal/mol (44322.8540 without restraints) Performing minimization step: 134. Total energy = 44099.6340 kcal/mol (44061.3779 without restraints) Performing minimization step: 135. Total energy = 43841.7476 kcal/mol (43803.9682 without restraints) Performing minimization step: 136. Total energy = 43587.8606 kcal/mol (43550.5489 without restraints) Performing minimization step: 137. Total energy = 43337.8977 kcal/mol (43301.0451 without restraints) Performing minimization step: 138. Total energy = 43091.7855 kcal/mol (43055.3832 without restraints) Performing minimization step: 139. Total energy = 42849.4525 kcal/mol (42813.4922 without restraints) Performing minimization step: 140. Total energy = 42610.8280 kcal/mol (42575.3014 without restraints) Performing minimization step: 141. Total energy = 42375.8428 kcal/mol (42340.7419 without restraints) Performing minimization step: 142. Total energy = 42144.4294 kcal/mol (42109.7461 without restraints) Performing minimization step: 143. Total energy = 41916.5215 kcal/mol (41882.2485 without restraints) Performing minimization step: 144. Total energy = 41692.0545 kcal/mol (41658.1840 without restraints) Performing minimization step: 145. Total energy = 41470.9641 kcal/mol (41437.4886 without restraints) Performing minimization step: 146. Total energy = 41253.1884 kcal/mol (41220.1006 without restraints) Performing minimization step: 147. Total energy = 41038.6660 kcal/mol (41005.9588 without restraints) Performing minimization step: 148. Total energy = 40827.3371 kcal/mol (40795.0034 without restraints) Performing minimization step: 149. Total energy = 40619.1426 kcal/mol (40587.1756 without restraints) Performing minimization step: 150. Total energy = 40414.0253 kcal/mol (40382.4183 without restraints) Performing minimization step: 151. Total energy = 40211.9286 kcal/mol (40180.6751 without restraints) Performing minimization step: 152. Total energy = 40012.7973 kcal/mol (39981.8907 without restraints) Performing minimization step: 153. Total energy = 39816.5768 kcal/mol (39786.0107 without restraints) Performing minimization step: 154. Total energy = 39623.2139 kcal/mol (39592.9823 without restraints) Performing minimization step: 155. Total energy = 39432.6567 kcal/mol (39402.7533 without restraints) Performing minimization step: 156. Total energy = 39244.8539 kcal/mol (39215.2728 without restraints) Performing minimization step: 157. Total energy = 39059.7553 kcal/mol (39030.4907 without restraints) Performing minimization step: 158. Total energy = 38877.3119 kcal/mol (38848.3579 without restraints) Performing minimization step: 159. Total energy = 38697.4753 kcal/mol (38668.8264 without restraints) Performing minimization step: 160. Total energy = 38520.1984 kcal/mol (38491.8490 without restraints) Performing minimization step: 161. Total energy = 38345.4346 kcal/mol (38317.3794 without restraints) Performing minimization step: 162. Total energy = 38173.1386 kcal/mol (38145.3722 without restraints) Performing minimization step: 163. Total energy = 38003.2655 kcal/mol (37975.7824 without restraints) Performing minimization step: 164. Total energy = 37835.7724 kcal/mol (37808.5682 without restraints) Performing minimization step: 165. Total energy = 37670.6157 kcal/mol (37643.6848 without restraints) Performing minimization step: 166. Total energy = 37507.7533 kcal/mol (37481.0910 without restraints) Performing minimization step: 167. Total energy = 37347.1439 kcal/mol (37320.7454 without restraints) Performing minimization step: 168. Total energy = 37188.7476 kcal/mol (37162.6081 without restraints) Performing minimization step: 169. Total energy = 37032.5244 kcal/mol (37006.6392 without restraints) Performing minimization step: 170. Total energy = 36878.4353 kcal/mol (36852.8000 without restraints) Performing minimization step: 171. Total energy = 36726.4422 kcal/mol (36701.0523 without restraints) Performing minimization step: 172. Total energy = 36576.5076 kcal/mol (36551.3588 without restraints) Performing minimization step: 173. Total energy = 36428.5950 kcal/mol (36403.6828 without restraints) Performing minimization step: 174. Total energy = 36282.6683 kcal/mol (36257.9886 without restraints) Performing minimization step: 175. Total energy = 36138.6921 kcal/mol (36114.2407 without restraints) Performing minimization step: 176. Total energy = 35996.6313 kcal/mol (35972.4044 without restraints) Performing minimization step: 177. Total energy = 35856.4524 kcal/mol (35832.4458 without restraints) Performing minimization step: 178. Total energy = 35718.1220 kcal/mol (35694.3319 without restraints) Performing minimization step: 179. Total energy = 35581.6072 kcal/mol (35558.0296 without restraints) Performing minimization step: 180. Total energy = 35446.8758 kcal/mol (35423.5071 without restraints) Performing minimization step: 181. Total energy = 35313.8965 kcal/mol (35290.7330 without restraints) Performing minimization step: 182. Total energy = 35182.6384 kcal/mol (35159.6765 without restraints) Performing minimization step: 183. Total energy = 35053.0710 kcal/mol (35030.3072 without restraints) Performing minimization step: 184. Total energy = 34925.1648 kcal/mol (34902.5955 without restraints) Performing minimization step: 185. Total energy = 34798.8903 kcal/mol (34776.5121 without restraints) Performing minimization step: 186. Total energy = 34674.2190 kcal/mol (34652.0287 without restraints) Performing minimization step: 187. Total energy = 34551.1231 kcal/mol (34529.1173 without restraints) Performing minimization step: 188. Total energy = 34429.5746 kcal/mol (34407.7502 without restraints) Performing minimization step: 189. Total energy = 34309.5466 kcal/mol (34287.9002 without restraints) Performing minimization step: 190. Total energy = 34191.0128 kcal/mol (34169.5415 without restraints) Performing minimization step: 191. Total energy = 34073.9468 kcal/mol (34052.6475 without restraints) Performing minimization step: 192. Total energy = 33958.3231 kcal/mol (33937.1928 without restraints) Performing minimization step: 193. Total energy = 33844.1166 kcal/mol (33823.1525 without restraints) Performing minimization step: 194. Total energy = 33731.3030 kcal/mol (33710.5021 without restraints) Performing minimization step: 195. Total energy = 33619.8577 kcal/mol (33599.2172 without restraints) Performing minimization step: 196. Total energy = 33509.7572 kcal/mol (33489.2743 without restraints) Performing minimization step: 197. Total energy = 33400.9782 kcal/mol (33380.6502 without restraints) Performing minimization step: 198. Total energy = 33293.4979 kcal/mol (33273.3222 without restraints) Performing minimization step: 199. Total energy = 33187.2939 kcal/mol (33167.2678 without restraints) Performing minimization step: 200. Total energy = 33082.3440 kcal/mol (33062.4650 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 201. Total energy = 32978.6270 kcal/mol (32958.8925 without restraints) Performing minimization step: 202. Total energy = 32876.1216 kcal/mol (32856.5292 without restraints) Performing minimization step: 203. Total energy = 32774.8067 kcal/mol (32755.3539 without restraints) Performing minimization step: 204. Total energy = 32674.6625 kcal/mol (32655.3470 without restraints) Performing minimization step: 205. Total energy = 32575.6685 kcal/mol (32556.4879 without restraints) Performing minimization step: 206. Total energy = 32477.8052 kcal/mol (32458.7572 without restraints) Performing minimization step: 207. Total energy = 32381.0534 kcal/mol (32362.1359 without restraints) Performing minimization step: 208. Total energy = 32285.3939 kcal/mol (32266.6046 without restraints) Performing minimization step: 209. Total energy = 32190.8084 kcal/mol (32172.1449 without restraints) Performing minimization step: 210. Total energy = 32097.2783 kcal/mol (32078.7387 without restraints) Performing minimization step: 211. Total energy = 32004.7859 kcal/mol (31986.3681 without restraints) Performing minimization step: 212. Total energy = 31913.3136 kcal/mol (31895.0155 without restraints) Performing minimization step: 213. Total energy = 31822.8442 kcal/mol (31804.6637 without restraints) Performing minimization step: 214. Total energy = 31733.3606 kcal/mol (31715.2958 without restraints) Performing minimization step: 215. Total energy = 31644.8471 kcal/mol (31626.8965 without restraints) Performing minimization step: 216. Total energy = 31557.2861 kcal/mol (31539.4471 without restraints) Performing minimization step: 217. Total energy = 31470.6619 kcal/mol (31452.9328 without restraints) Performing minimization step: 218. Total energy = 31384.9585 kcal/mol (31367.3377 without restraints) Performing minimization step: 219. Total energy = 31300.1610 kcal/mol (31282.6465 without restraints) Performing minimization step: 220. Total energy = 31216.2539 kcal/mol (31198.8438 without restraints) Performing minimization step: 221. Total energy = 31133.2226 kcal/mol (31115.9156 without restraints) Performing minimization step: 222. Total energy = 31051.0521 kcal/mol (31033.8462 without restraints) Performing minimization step: 223. Total energy = 30969.7285 kcal/mol (30952.6221 without restraints) Performing minimization step: 224. Total energy = 30889.2375 kcal/mol (30872.2289 without restraints) Performing minimization step: 225. Total energy = 30809.5652 kcal/mol (30792.6528 without restraints) Performing minimization step: 226. Total energy = 30730.6983 kcal/mol (30713.8806 without restraints) Performing minimization step: 227. Total energy = 30652.6231 kcal/mol (30635.8984 without restraints) Performing minimization step: 228. Total energy = 30575.3266 kcal/mol (30558.6935 without restraints) Performing minimization step: 229. Total energy = 30498.7964 kcal/mol (30482.2535 without restraints) Performing minimization step: 230. Total energy = 30423.0193 kcal/mol (30406.5648 without restraints) Performing minimization step: 231. Total energy = 30347.9832 kcal/mol (30331.6160 without restraints) Performing minimization step: 232. Total energy = 30273.6756 kcal/mol (30257.3939 without restraints) Performing minimization step: 233. Total energy = 30200.0843 kcal/mol (30183.8869 without restraints) Performing minimization step: 234. Total energy = 30127.1983 kcal/mol (30111.0839 without restraints) Performing minimization step: 235. Total energy = 30055.0059 kcal/mol (30038.9732 without restraints) Performing minimization step: 236. Total energy = 29983.4957 kcal/mol (29967.5431 without restraints) Performing minimization step: 237. Total energy = 29912.6561 kcal/mol (29896.7825 without restraints) Performing minimization step: 238. Total energy = 29842.4770 kcal/mol (29826.6811 without restraints) Performing minimization step: 239. Total energy = 29772.9473 kcal/mol (29757.2279 without restraints) Performing minimization step: 240. Total energy = 29704.0569 kcal/mol (29688.4127 without restraints) Performing minimization step: 241. Total energy = 29635.7949 kcal/mol (29620.2248 without restraints) Performing minimization step: 242. Total energy = 29568.1511 kcal/mol (29552.6538 without restraints) Performing minimization step: 243. Total energy = 29501.1158 kcal/mol (29485.6902 without restraints) Performing minimization step: 244. Total energy = 29434.6794 kcal/mol (29419.3245 without restraints) Performing minimization step: 245. Total energy = 29368.8320 kcal/mol (29353.5464 without restraints) Performing minimization step: 246. Total energy = 29303.5642 kcal/mol (29288.3470 without restraints) Performing minimization step: 247. Total energy = 29238.8668 kcal/mol (29223.7168 without restraints) Performing minimization step: 248. Total energy = 29174.7309 kcal/mol (29159.6471 without restraints) Performing minimization step: 249. Total energy = 29111.1471 kcal/mol (29096.1285 without restraints) Performing minimization step: 250. Total energy = 29048.1070 kcal/mol (29033.1524 without restraints) Performing minimization step: 251. Total energy = 28985.6018 kcal/mol (28970.7104 without restraints) Performing minimization step: 252. Total energy = 28923.6232 kcal/mol (28908.7939 without restraints) Performing minimization step: 253. Total energy = 28862.1628 kcal/mol (28847.3947 without restraints) Performing minimization step: 254. Total energy = 28801.2126 kcal/mol (28786.5046 without restraints) Performing minimization step: 255. Total energy = 28740.7643 kcal/mol (28726.1157 without restraints) Performing minimization step: 256. Total energy = 28680.8102 kcal/mol (28666.2199 without restraints) Performing minimization step: 257. Total energy = 28621.3424 kcal/mol (28606.8096 without restraints) Performing minimization step: 258. Total energy = 28562.3540 kcal/mol (28547.8778 without restraints) Performing minimization step: 259. Total energy = 28503.8368 kcal/mol (28489.4164 without restraints) Performing minimization step: 260. Total energy = 28445.7836 kcal/mol (28431.4180 without restraints) Performing minimization step: 261. Total energy = 28388.1876 kcal/mol (28373.8761 without restraints) Performing minimization step: 262. Total energy = 28331.0413 kcal/mol (28316.7829 without restraints) Performing minimization step: 263. Total energy = 28274.3382 kcal/mol (28260.1321 without restraints) Performing minimization step: 264. Total energy = 28218.0710 kcal/mol (28203.9166 without restraints) Performing minimization step: 265. Total energy = 28162.2331 kcal/mol (28148.1296 without restraints) Performing minimization step: 266. Total energy = 28106.8177 kcal/mol (28092.7642 without restraints) Performing minimization step: 267. Total energy = 28051.8192 kcal/mol (28037.8150 without restraints) Performing minimization step: 268. Total energy = 27997.2309 kcal/mol (27983.2754 without restraints) Performing minimization step: 269. Total energy = 27943.0464 kcal/mol (27929.1387 without restraints) Performing minimization step: 270. Total energy = 27889.2599 kcal/mol (27875.3993 without restraints) Performing minimization step: 271. Total energy = 27835.8646 kcal/mol (27822.0505 without restraints) Performing minimization step: 272. Total energy = 27782.8554 kcal/mol (27769.0871 without restraints) Performing minimization step: 273. Total energy = 27730.2264 kcal/mol (27716.5031 without restraints) Performing minimization step: 274. Total energy = 27677.9719 kcal/mol (27664.2931 without restraints) Performing minimization step: 275. Total energy = 27626.0867 kcal/mol (27612.4517 without restraints) Performing minimization step: 276. Total energy = 27574.5646 kcal/mol (27560.9727 without restraints) Performing minimization step: 277. Total energy = 27523.4006 kcal/mol (27509.8512 without restraints) Performing minimization step: 278. Total energy = 27472.5895 kcal/mol (27459.0819 without restraints) Performing minimization step: 279. Total energy = 27422.1256 kcal/mol (27408.6594 without restraints) Performing minimization step: 280. Total energy = 27372.0042 kcal/mol (27358.5787 without restraints) Performing minimization step: 281. Total energy = 27322.2202 kcal/mol (27308.8347 without restraints) Performing minimization step: 282. Total energy = 27272.7691 kcal/mol (27259.4233 without restraints) Performing minimization step: 283. Total energy = 27223.6457 kcal/mol (27210.3389 without restraints) Performing minimization step: 284. Total energy = 27174.8454 kcal/mol (27161.5773 without restraints) Performing minimization step: 285. Total energy = 27126.3631 kcal/mol (27113.1327 without restraints) Performing minimization step: 286. Total energy = 27078.1946 kcal/mol (27065.0015 without restraints) Performing minimization step: 287. Total energy = 27030.3355 kcal/mol (27017.1792 without restraints) Performing minimization step: 288. Total energy = 26982.7813 kcal/mol (26969.6614 without restraints) Performing minimization step: 289. Total energy = 26935.5277 kcal/mol (26922.4437 without restraints) Performing minimization step: 290. Total energy = 26888.5702 kcal/mol (26875.5215 without restraints) Performing minimization step: 291. Total energy = 26841.9052 kcal/mol (26828.8914 without restraints) Performing minimization step: 292. Total energy = 26795.5281 kcal/mol (26782.5487 without restraints) Performing minimization step: 293. Total energy = 26749.4351 kcal/mol (26736.4896 without restraints) Performing minimization step: 294. Total energy = 26703.6219 kcal/mol (26690.7098 without restraints) Performing minimization step: 295. Total energy = 26658.0851 kcal/mol (26645.2061 without restraints) Performing minimization step: 296. Total energy = 26612.8206 kcal/mol (26599.9741 without restraints) Performing minimization step: 297. Total energy = 26567.8247 kcal/mol (26555.0103 without restraints) Performing minimization step: 298. Total energy = 26523.0937 kcal/mol (26510.3111 without restraints) Performing minimization step: 299. Total energy = 26478.6244 kcal/mol (26465.8731 without restraints) Performing minimization step: 300. Total energy = 26434.4123 kcal/mol (26421.6916 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 301. Total energy = 26390.4546 kcal/mol (26377.7646 without restraints) Performing minimization step: 302. Total energy = 26346.7479 kcal/mol (26334.0879 without restraints) Performing minimization step: 303. Total energy = 26303.2888 kcal/mol (26290.6586 without restraints) Performing minimization step: 304. Total energy = 26260.0738 kcal/mol (26247.4728 without restraints) Performing minimization step: 305. Total energy = 26217.0994 kcal/mol (26204.5274 without restraints) Performing minimization step: 306. Total energy = 26174.3632 kcal/mol (26161.8196 without restraints) Performing minimization step: 307. Total energy = 26131.8616 kcal/mol (26119.3463 without restraints) Performing minimization step: 308. Total energy = 26089.5912 kcal/mol (26077.1037 without restraints) Performing minimization step: 309. Total energy = 26047.5497 kcal/mol (26035.0897 without restraints) Performing minimization step: 310. Total energy = 26005.7335 kcal/mol (25993.3006 without restraints) Performing minimization step: 311. Total energy = 25964.1404 kcal/mol (25951.7343 without restraints) Performing minimization step: 312. Total energy = 25922.7666 kcal/mol (25910.3870 without restraints) Performing minimization step: 313. Total energy = 25881.6101 kcal/mol (25869.2566 without restraints) Performing minimization step: 314. Total energy = 25840.6680 kcal/mol (25828.3403 without restraints) Performing minimization step: 315. Total energy = 25799.9371 kcal/mol (25787.6349 without restraints) Performing minimization step: 316. Total energy = 25759.4155 kcal/mol (25747.1386 without restraints) Performing minimization step: 317. Total energy = 25719.0998 kcal/mol (25706.8477 without restraints) Performing minimization step: 318. Total energy = 25678.9883 kcal/mol (25666.7608 without restraints) Performing minimization step: 319. Total energy = 25639.0780 kcal/mol (25626.8748 without restraints) Performing minimization step: 320. Total energy = 25599.3654 kcal/mol (25587.1862 without restraints) Performing minimization step: 321. Total energy = 25559.8485 kcal/mol (25547.6931 without restraints) Performing minimization step: 322. Total energy = 25520.5266 kcal/mol (25508.3946 without restraints) Performing minimization step: 323. Total energy = 25481.3955 kcal/mol (25469.2867 without restraints) Performing minimization step: 324. Total energy = 25442.4538 kcal/mol (25430.3679 without restraints) Performing minimization step: 325. Total energy = 25403.6989 kcal/mol (25391.6357 without restraints) Performing minimization step: 326. Total energy = 25365.1289 kcal/mol (25353.0880 without restraints) Performing minimization step: 327. Total energy = 25326.7412 kcal/mol (25314.7225 without restraints) Performing minimization step: 328. Total energy = 25288.5338 kcal/mol (25276.5370 without restraints) Performing minimization step: 329. Total energy = 25250.5046 kcal/mol (25238.5294 without restraints) Performing minimization step: 330. Total energy = 25212.6518 kcal/mol (25200.6982 without restraints) Performing minimization step: 331. Total energy = 25174.9727 kcal/mol (25163.0401 without restraints) Performing minimization step: 332. Total energy = 25137.4656 kcal/mol (25125.5539 without restraints) Performing minimization step: 333. Total energy = 25100.1281 kcal/mol (25088.2371 without restraints) Performing minimization step: 334. Total energy = 25062.9590 kcal/mol (25051.0883 without restraints) Performing minimization step: 335. Total energy = 25025.9559 kcal/mol (25014.1054 without restraints) Performing minimization step: 336. Total energy = 24989.1171 kcal/mol (24977.2869 without restraints) Performing minimization step: 337. Total energy = 24952.4412 kcal/mol (24940.6309 without restraints) Performing minimization step: 338. Total energy = 24915.9260 kcal/mol (24904.1352 without restraints) Performing minimization step: 339. Total energy = 24879.5694 kcal/mol (24867.7980 without restraints) Performing minimization step: 340. Total energy = 24843.3701 kcal/mol (24831.6178 without restraints) Performing minimization step: 341. Total energy = 24807.3262 kcal/mol (24795.5930 without restraints) Performing minimization step: 342. Total energy = 24771.4359 kcal/mol (24759.7215 without restraints) Performing minimization step: 343. Total energy = 24735.6979 kcal/mol (24724.0022 without restraints) Performing minimization step: 344. Total energy = 24700.1099 kcal/mol (24688.4326 without restraints) Performing minimization step: 345. Total energy = 24664.6711 kcal/mol (24653.0121 without restraints) Performing minimization step: 346. Total energy = 24629.3794 kcal/mol (24617.7384 without restraints) Performing minimization step: 347. Total energy = 24594.2331 kcal/mol (24582.6100 without restraints) Performing minimization step: 348. Total energy = 24559.2316 kcal/mol (24547.6262 without restraints) Performing minimization step: 349. Total energy = 24524.3724 kcal/mol (24512.7847 without restraints) Performing minimization step: 350. Total energy = 24489.6546 kcal/mol (24478.0842 without restraints) Performing minimization step: 351. Total energy = 24455.0759 kcal/mol (24443.5226 without restraints) Performing minimization step: 352. Total energy = 24420.6353 kcal/mol (24409.0990 without restraints) Performing minimization step: 353. Total energy = 24386.3323 kcal/mol (24374.8129 without restraints) Performing minimization step: 354. Total energy = 24352.1649 kcal/mol (24340.6622 without restraints) Performing minimization step: 355. Total energy = 24318.1317 kcal/mol (24306.6456 without restraints) Performing minimization step: 356. Total energy = 24284.2312 kcal/mol (24272.7615 without restraints) Performing minimization step: 357. Total energy = 24250.4619 kcal/mol (24239.0084 without restraints) Performing minimization step: 358. Total energy = 24216.8230 kcal/mol (24205.3856 without restraints) Performing minimization step: 359. Total energy = 24183.3132 kcal/mol (24171.8918 without restraints) Performing minimization step: 360. Total energy = 24149.9313 kcal/mol (24138.5259 without restraints) Performing minimization step: 361. Total energy = 24116.6757 kcal/mol (24105.2858 without restraints) Performing minimization step: 362. Total energy = 24083.5452 kcal/mol (24072.1709 without restraints) Performing minimization step: 363. Total energy = 24050.5389 kcal/mol (24039.1799 without restraints) Performing minimization step: 364. Total energy = 24017.6558 kcal/mol (24006.3120 without restraints) Performing minimization step: 365. Total energy = 23984.8940 kcal/mol (23973.5653 without restraints) Performing minimization step: 366. Total energy = 23952.2532 kcal/mol (23940.9396 without restraints) Performing minimization step: 367. Total energy = 23919.7316 kcal/mol (23908.4329 without restraints) Performing minimization step: 368. Total energy = 23887.3281 kcal/mol (23876.0441 without restraints) Performing minimization step: 369. Total energy = 23855.0426 kcal/mol (23843.7732 without restraints) Performing minimization step: 370. Total energy = 23822.8734 kcal/mol (23811.6185 without restraints) Performing minimization step: 371. Total energy = 23790.8195 kcal/mol (23779.5789 without restraints) Performing minimization step: 372. Total energy = 23758.8796 kcal/mol (23747.6534 without restraints) Performing minimization step: 373. Total energy = 23727.0527 kcal/mol (23715.8405 without restraints) Performing minimization step: 374. Total energy = 23695.3382 kcal/mol (23684.1401 without restraints) Performing minimization step: 375. Total energy = 23663.7346 kcal/mol (23652.5504 without restraints) Performing minimization step: 376. Total energy = 23632.2417 kcal/mol (23621.0712 without restraints) Performing minimization step: 377. Total energy = 23600.8579 kcal/mol (23589.7014 without restraints) Performing minimization step: 378. Total energy = 23569.5818 kcal/mol (23558.4387 without restraints) Performing minimization step: 379. Total energy = 23538.4139 kcal/mol (23527.2842 without restraints) Performing minimization step: 380. Total energy = 23507.3524 kcal/mol (23496.2363 without restraints) Performing minimization step: 381. Total energy = 23476.3968 kcal/mol (23465.2938 without restraints) Performing minimization step: 382. Total energy = 23445.5455 kcal/mol (23434.4557 without restraints) Performing minimization step: 383. Total energy = 23414.7981 kcal/mol (23403.7214 without restraints) Performing minimization step: 384. Total energy = 23384.1538 kcal/mol (23373.0901 without restraints) Performing minimization step: 385. Total energy = 23353.6118 kcal/mol (23342.5608 without restraints) Performing minimization step: 386. Total energy = 23323.1714 kcal/mol (23312.1333 without restraints) Performing minimization step: 387. Total energy = 23292.8315 kcal/mol (23281.8061 without restraints) Performing minimization step: 388. Total energy = 23262.5916 kcal/mol (23251.5788 without restraints) Performing minimization step: 389. Total energy = 23232.4504 kcal/mol (23221.4501 without restraints) Performing minimization step: 390. Total energy = 23202.4074 kcal/mol (23191.4195 without restraints) Performing minimization step: 391. Total energy = 23172.4615 kcal/mol (23161.4859 without restraints) Performing minimization step: 392. Total energy = 23142.6123 kcal/mol (23131.6490 without restraints) Performing minimization step: 393. Total energy = 23112.8600 kcal/mol (23101.9088 without restraints) Performing minimization step: 394. Total energy = 23083.2024 kcal/mol (23072.2634 without restraints) Performing minimization step: 395. Total energy = 23053.6392 kcal/mol (23042.7120 without restraints) Performing minimization step: 396. Total energy = 23024.1696 kcal/mol (23013.2543 without restraints) Performing minimization step: 397. Total energy = 22994.7934 kcal/mol (22983.8900 without restraints) Performing minimization step: 398. Total energy = 22965.5096 kcal/mol (22954.6180 without restraints) Performing minimization step: 399. Total energy = 22936.3173 kcal/mol (22925.4373 without restraints) Performing minimization step: 400. Total energy = 22907.2161 kcal/mol (22896.3477 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 401. Total energy = 22878.2055 kcal/mol (22867.3487 without restraints) Performing minimization step: 402. Total energy = 22849.2836 kcal/mol (22838.4381 without restraints) Performing minimization step: 403. Total energy = 22820.4531 kcal/mol (22809.6190 without restraints) Performing minimization step: 404. Total energy = 22791.7097 kcal/mol (22780.8870 without restraints) Performing minimization step: 405. Total energy = 22763.0544 kcal/mol (22752.2429 without restraints) Performing minimization step: 406. Total energy = 22734.4860 kcal/mol (22723.6856 without restraints) Performing minimization step: 407. Total energy = 22706.0040 kcal/mol (22695.2148 without restraints) Performing minimization step: 408. Total energy = 22677.6084 kcal/mol (22666.8301 without restraints) Performing minimization step: 409. Total energy = 22649.2992 kcal/mol (22638.5319 without restraints) Performing minimization step: 410. Total energy = 22621.0737 kcal/mol (22610.3173 without restraints) Performing minimization step: 411. Total energy = 22592.9328 kcal/mol (22582.1873 without restraints) Performing minimization step: 412. Total energy = 22564.8759 kcal/mol (22554.1410 without restraints) Performing minimization step: 413. Total energy = 22536.9022 kcal/mol (22526.1782 without restraints) Performing minimization step: 414. Total energy = 22509.0105 kcal/mol (22498.2968 without restraints) Performing minimization step: 415. Total energy = 22481.2013 kcal/mol (22470.4984 without restraints) Performing minimization step: 416. Total energy = 22453.4736 kcal/mol (22442.7812 without restraints) Performing minimization step: 417. Total energy = 22425.8270 kcal/mol (22415.1450 without restraints) Performing minimization step: 418. Total energy = 22398.2610 kcal/mol (22387.5894 without restraints) Performing minimization step: 419. Total energy = 22370.7742 kcal/mol (22360.1132 without restraints) Performing minimization step: 420. Total energy = 22343.3677 kcal/mol (22332.7167 without restraints) Performing minimization step: 421. Total energy = 22316.0401 kcal/mol (22305.3993 without restraints) Performing minimization step: 422. Total energy = 22288.7912 kcal/mol (22278.1606 without restraints) Performing minimization step: 423. Total energy = 22261.6201 kcal/mol (22250.9996 without restraints) Performing minimization step: 424. Total energy = 22234.5265 kcal/mol (22223.9161 without restraints) Performing minimization step: 425. Total energy = 22207.5099 kcal/mol (22196.9094 without restraints) Performing minimization step: 426. Total energy = 22180.5702 kcal/mol (22169.9798 without restraints) Performing minimization step: 427. Total energy = 22153.7072 kcal/mol (22143.1266 without restraints) Performing minimization step: 428. Total energy = 22126.9187 kcal/mol (22116.3479 without restraints) Performing minimization step: 429. Total energy = 22100.2057 kcal/mol (22089.6448 without restraints) Performing minimization step: 430. Total energy = 22073.5678 kcal/mol (22063.0165 without restraints) Performing minimization step: 431. Total energy = 22047.0042 kcal/mol (22036.4626 without restraints) Performing minimization step: 432. Total energy = 22020.5144 kcal/mol (22009.9825 without restraints) Performing minimization step: 433. Total energy = 21994.0983 kcal/mol (21983.5760 without restraints) Performing minimization step: 434. Total energy = 21967.7554 kcal/mol (21957.2427 without restraints) Performing minimization step: 435. Total energy = 21941.4858 kcal/mol (21930.9824 without restraints) Performing minimization step: 436. Total energy = 21915.2873 kcal/mol (21904.7934 without restraints) Performing minimization step: 437. Total energy = 21889.1614 kcal/mol (21878.6770 without restraints) Performing minimization step: 438. Total energy = 21863.1067 kcal/mol (21852.6316 without restraints) Performing minimization step: 439. Total energy = 21837.1231 kcal/mol (21826.6573 without restraints) Performing minimization step: 440. Total energy = 21811.2103 kcal/mol (21800.7540 without restraints) Performing minimization step: 441. Total energy = 21785.3681 kcal/mol (21774.9208 without restraints) Performing minimization step: 442. Total energy = 21759.5955 kcal/mol (21749.1575 without restraints) Performing minimization step: 443. Total energy = 21733.8921 kcal/mol (21723.4631 without restraints) Performing minimization step: 444. Total energy = 21708.2583 kcal/mol (21697.8384 without restraints) Performing minimization step: 445. Total energy = 21682.6926 kcal/mol (21672.2818 without restraints) Performing minimization step: 446. Total energy = 21657.1960 kcal/mol (21646.7942 without restraints) Performing minimization step: 447. Total energy = 21631.7671 kcal/mol (21621.3743 without restraints) Performing minimization step: 448. Total energy = 21606.4060 kcal/mol (21596.0221 without restraints) Performing minimization step: 449. Total energy = 21581.1128 kcal/mol (21570.7378 without restraints) Performing minimization step: 450. Total energy = 21555.8861 kcal/mol (21545.5200 without restraints) Performing minimization step: 451. Total energy = 21530.7264 kcal/mol (21520.3690 without restraints) Performing minimization step: 452. Total energy = 21505.6335 kcal/mol (21495.2849 without restraints) Performing minimization step: 453. Total energy = 21480.6062 kcal/mol (21470.2663 without restraints) Performing minimization step: 454. Total energy = 21455.6445 kcal/mol (21445.3134 without restraints) Performing minimization step: 455. Total energy = 21430.7482 kcal/mol (21420.4257 without restraints) Performing minimization step: 456. Total energy = 21405.9174 kcal/mol (21395.6036 without restraints) Performing minimization step: 457. Total energy = 21381.1509 kcal/mol (21370.8458 without restraints) Performing minimization step: 458. Total energy = 21356.4495 kcal/mol (21346.1528 without restraints) Performing minimization step: 459. Total energy = 21331.8118 kcal/mol (21321.5236 without restraints) Performing minimization step: 460. Total energy = 21307.2374 kcal/mol (21296.9577 without restraints) Performing minimization step: 461. Total energy = 21282.7262 kcal/mol (21272.4548 without restraints) Performing minimization step: 462. Total energy = 21258.2786 kcal/mol (21248.0157 without restraints) Performing minimization step: 463. Total energy = 21233.8941 kcal/mol (21223.6397 without restraints) Performing minimization step: 464. Total energy = 21209.5725 kcal/mol (21199.3264 without restraints) Performing minimization step: 465. Total energy = 21185.3129 kcal/mol (21175.0751 without restraints) Performing minimization step: 466. Total energy = 21161.1153 kcal/mol (21150.8857 without restraints) Performing minimization step: 467. Total energy = 21136.9794 kcal/mol (21126.7581 without restraints) Performing minimization step: 468. Total energy = 21112.9049 kcal/mol (21102.6920 without restraints) Performing minimization step: 469. Total energy = 21088.8914 kcal/mol (21078.6865 without restraints) Performing minimization step: 470. Total energy = 21064.9392 kcal/mol (21054.7426 without restraints) Performing minimization step: 471. Total energy = 21041.0475 kcal/mol (21030.8587 without restraints) Performing minimization step: 472. Total energy = 21017.2162 kcal/mol (21007.0356 without restraints) Performing minimization step: 473. Total energy = 20993.4452 kcal/mol (20983.2728 without restraints) Performing minimization step: 474. Total energy = 20969.7341 kcal/mol (20959.5696 without restraints) Performing minimization step: 475. Total energy = 20946.0818 kcal/mol (20935.9254 without restraints) Performing minimization step: 476. Total energy = 20922.4897 kcal/mol (20912.3413 without restraints) Performing minimization step: 477. Total energy = 20898.9565 kcal/mol (20888.8160 without restraints) Performing minimization step: 478. Total energy = 20875.4823 kcal/mol (20865.3497 without restraints) Performing minimization step: 479. Total energy = 20852.0664 kcal/mol (20841.9417 without restraints) Performing minimization step: 480. Total energy = 20828.7086 kcal/mol (20818.5918 without restraints) Performing minimization step: 481. Total energy = 20805.4088 kcal/mol (20795.2999 without restraints) Performing minimization step: 482. Total energy = 20782.1668 kcal/mol (20772.0659 without restraints) Performing minimization step: 483. Total energy = 20758.9826 kcal/mol (20748.8894 without restraints) Performing minimization step: 484. Total energy = 20735.8561 kcal/mol (20725.7705 without restraints) Performing minimization step: 485. Total energy = 20712.7865 kcal/mol (20702.7087 without restraints) Performing minimization step: 486. Total energy = 20689.7739 kcal/mol (20679.7038 without restraints) Performing minimization step: 487. Total energy = 20666.8178 kcal/mol (20656.7553 without restraints) Performing minimization step: 488. Total energy = 20643.9174 kcal/mol (20633.8625 without restraints) Performing minimization step: 489. Total energy = 20621.0736 kcal/mol (20611.0263 without restraints) Performing minimization step: 490. Total energy = 20598.2856 kcal/mol (20588.2460 without restraints) Performing minimization step: 491. Total energy = 20575.5532 kcal/mol (20565.5211 without restraints) Performing minimization step: 492. Total energy = 20552.8767 kcal/mol (20542.8522 without restraints) Performing minimization step: 493. Total energy = 20530.2554 kcal/mol (20520.2385 without restraints) Performing minimization step: 494. Total energy = 20507.6894 kcal/mol (20497.6799 without restraints) Performing minimization step: 495. Total energy = 20485.1781 kcal/mol (20475.1760 without restraints) Performing minimization step: 496. Total energy = 20462.7215 kcal/mol (20452.7271 without restraints) Performing minimization step: 497. Total energy = 20440.3191 kcal/mol (20430.3320 without restraints) Performing minimization step: 498. Total energy = 20417.9713 kcal/mol (20407.9916 without restraints) Performing minimization step: 499. Total energy = 20395.6764 kcal/mol (20385.7040 without restraints) Performing minimization step: 500. Total energy = 20373.4361 kcal/mol (20363.4711 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 501. Total energy = 20351.2490 kcal/mol (20341.2913 without restraints) Performing minimization step: 502. Total energy = 20329.1155 kcal/mol (20319.1651 without restraints) Performing minimization step: 503. Total energy = 20307.0353 kcal/mol (20297.0921 without restraints) Performing minimization step: 504. Total energy = 20285.0078 kcal/mol (20275.0719 without restraints) Performing minimization step: 505. Total energy = 20263.0333 kcal/mol (20253.1046 without restraints) Performing minimization step: 506. Total energy = 20241.1113 kcal/mol (20231.1899 without restraints) Performing minimization step: 507. Total energy = 20219.2419 kcal/mol (20209.3277 without restraints) Performing minimization step: 508. Total energy = 20197.4244 kcal/mol (20187.5176 without restraints) Performing minimization step: 509. Total energy = 20175.6595 kcal/mol (20165.7597 without restraints) Performing minimization step: 510. Total energy = 20153.9456 kcal/mol (20144.0527 without restraints) Performing minimization step: 511. Total energy = 20132.2837 kcal/mol (20122.3981 without restraints) Performing minimization step: 512. Total energy = 20110.6736 kcal/mol (20100.7950 without restraints) Performing minimization step: 513. Total energy = 20089.1146 kcal/mol (20079.2432 without restraints) Performing minimization step: 514. Total energy = 20067.6066 kcal/mol (20057.7422 without restraints) Performing minimization step: 515. Total energy = 20046.1484 kcal/mol (20036.2909 without restraints) Performing minimization step: 516. Total energy = 20024.7421 kcal/mol (20014.8917 without restraints) Performing minimization step: 517. Total energy = 20003.3862 kcal/mol (19993.5428 without restraints) Performing minimization step: 518. Total energy = 19982.0805 kcal/mol (19972.2441 without restraints) Performing minimization step: 519. Total energy = 19960.8248 kcal/mol (19950.9953 without restraints) Performing minimization step: 520. Total energy = 19939.6194 kcal/mol (19929.7968 without restraints) Performing minimization step: 521. Total energy = 19918.4640 kcal/mol (19908.6483 without restraints) Performing minimization step: 522. Total energy = 19897.3579 kcal/mol (19887.5491 without restraints) Performing minimization step: 523. Total energy = 19876.3017 kcal/mol (19866.4999 without restraints) Performing minimization step: 524. Total energy = 19855.2947 kcal/mol (19845.4996 without restraints) Performing minimization step: 525. Total energy = 19834.3371 kcal/mol (19824.5489 without restraints) Performing minimization step: 526. Total energy = 19813.4281 kcal/mol (19803.6467 without restraints) Performing minimization step: 527. Total energy = 19792.5683 kcal/mol (19782.7937 without restraints) Performing minimization step: 528. Total energy = 19771.7571 kcal/mol (19761.9893 without restraints) Performing minimization step: 529. Total energy = 19750.9941 kcal/mol (19741.2331 without restraints) Performing minimization step: 530. Total energy = 19730.2794 kcal/mol (19720.5251 without restraints) Performing minimization step: 531. Total energy = 19709.6130 kcal/mol (19699.8654 without restraints) Performing minimization step: 532. Total energy = 19688.9949 kcal/mol (19679.2541 without restraints) Performing minimization step: 533. Total energy = 19668.4245 kcal/mol (19658.6903 without restraints) Performing minimization step: 534. Total energy = 19647.9017 kcal/mol (19638.1742 without restraints) Performing minimization step: 535. Total energy = 19627.4270 kcal/mol (19617.7061 without restraints) Performing minimization step: 536. Total energy = 19606.9992 kcal/mol (19597.2849 without restraints) Performing minimization step: 537. Total energy = 19586.6186 kcal/mol (19576.9110 without restraints) Performing minimization step: 538. Total energy = 19566.2847 kcal/mol (19556.5837 without restraints) Performing minimization step: 539. Total energy = 19545.9985 kcal/mol (19536.3040 without restraints) Performing minimization step: 540. Total energy = 19525.7586 kcal/mol (19516.0709 without restraints) Performing minimization step: 541. Total energy = 19505.5659 kcal/mol (19495.8846 without restraints) Performing minimization step: 542. Total energy = 19485.4190 kcal/mol (19475.7442 without restraints) Performing minimization step: 543. Total energy = 19465.3178 kcal/mol (19455.6496 without restraints) Performing minimization step: 544. Total energy = 19445.2635 kcal/mol (19435.6017 without restraints) Performing minimization step: 545. Total energy = 19425.2549 kcal/mol (19415.5997 without restraints) Performing minimization step: 546. Total energy = 19405.2928 kcal/mol (19395.6440 without restraints) Performing minimization step: 547. Total energy = 19385.3758 kcal/mol (19375.7335 without restraints) Performing minimization step: 548. Total energy = 19365.5049 kcal/mol (19355.8691 without restraints) Performing minimization step: 549. Total energy = 19345.6793 kcal/mol (19336.0498 without restraints) Performing minimization step: 550. Total energy = 19325.8993 kcal/mol (19316.2762 without restraints) Performing minimization step: 551. Total energy = 19306.1643 kcal/mol (19296.5476 without restraints) Performing minimization step: 552. Total energy = 19286.4742 kcal/mol (19276.8639 without restraints) Performing minimization step: 553. Total energy = 19266.8290 kcal/mol (19257.2250 without restraints) Performing minimization step: 554. Total energy = 19247.2287 kcal/mol (19237.6311 without restraints) Performing minimization step: 555. Total energy = 19227.6729 kcal/mol (19218.0815 without restraints) Performing minimization step: 556. Total energy = 19208.1613 kcal/mol (19198.5763 without restraints) Performing minimization step: 557. Total energy = 19188.6946 kcal/mol (19179.1159 without restraints) Performing minimization step: 558. Total energy = 19169.2715 kcal/mol (19159.6991 without restraints) Performing minimization step: 559. Total energy = 19149.8928 kcal/mol (19140.3268 without restraints) Performing minimization step: 560. Total energy = 19130.5578 kcal/mol (19120.9978 without restraints) Performing minimization step: 561. Total energy = 19111.2668 kcal/mol (19101.7131 without restraints) Performing minimization step: 562. Total energy = 19092.0189 kcal/mol (19082.4715 without restraints) Performing minimization step: 563. Total energy = 19072.8149 kcal/mol (19063.2737 without restraints) Performing minimization step: 564. Total energy = 19053.6547 kcal/mol (19044.1196 without restraints) Performing minimization step: 565. Total energy = 19034.5373 kcal/mol (19025.0083 without restraints) Performing minimization step: 566. Total energy = 19015.4631 kcal/mol (19005.9405 without restraints) Performing minimization step: 567. Total energy = 18996.4321 kcal/mol (18986.9156 without restraints) Performing minimization step: 568. Total energy = 18977.4444 kcal/mol (18967.9340 without restraints) Performing minimization step: 569. Total energy = 18958.4989 kcal/mol (18948.9946 without restraints) Performing minimization step: 570. Total energy = 18939.5959 kcal/mol (18930.0977 without restraints) Performing minimization step: 571. Total energy = 18920.7355 kcal/mol (18911.2435 without restraints) Performing minimization step: 572. Total energy = 18901.9174 kcal/mol (18892.4313 without restraints) Performing minimization step: 573. Total energy = 18883.1416 kcal/mol (18873.6618 without restraints) Performing minimization step: 574. Total energy = 18864.4082 kcal/mol (18854.9342 without restraints) Performing minimization step: 575. Total energy = 18845.7166 kcal/mol (18836.2487 without restraints) Performing minimization step: 576. Total energy = 18827.0667 kcal/mol (18817.6050 without restraints) Performing minimization step: 577. Total energy = 18808.4586 kcal/mol (18799.0028 without restraints) Performing minimization step: 578. Total energy = 18789.8925 kcal/mol (18780.4427 without restraints) Performing minimization step: 579. Total energy = 18771.3675 kcal/mol (18761.9237 without restraints) Performing minimization step: 580. Total energy = 18752.8837 kcal/mol (18743.4458 without restraints) Performing minimization step: 581. Total energy = 18734.4413 kcal/mol (18725.0093 without restraints) Performing minimization step: 582. Total energy = 18716.0399 kcal/mol (18706.6138 without restraints) Performing minimization step: 583. Total energy = 18697.6791 kcal/mol (18688.2590 without restraints) Performing minimization step: 584. Total energy = 18679.3599 kcal/mol (18669.9456 without restraints) Performing minimization step: 585. Total energy = 18661.0811 kcal/mol (18651.6727 without restraints) Performing minimization step: 586. Total energy = 18642.8430 kcal/mol (18633.4407 without restraints) Performing minimization step: 587. Total energy = 18624.6457 kcal/mol (18615.2492 without restraints) Performing minimization step: 588. Total energy = 18606.4888 kcal/mol (18597.0982 without restraints) Performing minimization step: 589. Total energy = 18588.3718 kcal/mol (18578.9870 without restraints) Performing minimization step: 590. Total energy = 18570.2956 kcal/mol (18560.9167 without restraints) Performing minimization step: 591. Total energy = 18552.2596 kcal/mol (18542.8865 without restraints) Performing minimization step: 592. Total energy = 18534.2633 kcal/mol (18524.8961 without restraints) Performing minimization step: 593. Total energy = 18516.3068 kcal/mol (18506.9453 without restraints) Performing minimization step: 594. Total energy = 18498.3903 kcal/mol (18489.0346 without restraints) Performing minimization step: 595. Total energy = 18480.5128 kcal/mol (18471.1629 without restraints) Performing minimization step: 596. Total energy = 18462.6757 kcal/mol (18453.3315 without restraints) Performing minimization step: 597. Total energy = 18444.8775 kcal/mol (18435.5391 without restraints) Performing minimization step: 598. Total energy = 18427.1192 kcal/mol (18417.7865 without restraints) Performing minimization step: 599. Total energy = 18409.3996 kcal/mol (18400.0727 without restraints) Performing minimization step: 600. Total energy = 18391.7190 kcal/mol (18382.3976 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 601. Total energy = 18374.0770 kcal/mol (18364.7614 without restraints) Performing minimization step: 602. Total energy = 18356.4744 kcal/mol (18347.1646 without restraints) Performing minimization step: 603. Total energy = 18338.9105 kcal/mol (18329.6063 without restraints) Performing minimization step: 604. Total energy = 18321.3857 kcal/mol (18312.0870 without restraints) Performing minimization step: 605. Total energy = 18303.8984 kcal/mol (18294.6055 without restraints) Performing minimization step: 606. Total energy = 18286.4500 kcal/mol (18277.1628 without restraints) Performing minimization step: 607. Total energy = 18269.0396 kcal/mol (18259.7580 without restraints) Performing minimization step: 608. Total energy = 18251.6677 kcal/mol (18242.3918 without restraints) Performing minimization step: 609. Total energy = 18234.3338 kcal/mol (18225.0634 without restraints) Performing minimization step: 610. Total energy = 18217.0381 kcal/mol (18207.7733 without restraints) Performing minimization step: 611. Total energy = 18199.7803 kcal/mol (18190.5210 without restraints) Performing minimization step: 612. Total energy = 18182.5599 kcal/mol (18173.3065 without restraints) Performing minimization step: 613. Total energy = 18165.3772 kcal/mol (18156.1291 without restraints) Performing minimization step: 614. Total energy = 18148.2321 kcal/mol (18138.9896 without restraints) Performing minimization step: 615. Total energy = 18131.1240 kcal/mol (18121.8870 without restraints) Performing minimization step: 616. Total energy = 18114.0535 kcal/mol (18104.8221 without restraints) Performing minimization step: 617. Total energy = 18097.0208 kcal/mol (18087.7948 without restraints) Performing minimization step: 618. Total energy = 18080.0249 kcal/mol (18070.8044 without restraints) Performing minimization step: 619. Total energy = 18063.0657 kcal/mol (18053.8508 without restraints) Performing minimization step: 620. Total energy = 18046.1437 kcal/mol (18036.9342 without restraints) Performing minimization step: 621. Total energy = 18029.2586 kcal/mol (18020.0546 without restraints) Performing minimization step: 622. Total energy = 18012.4101 kcal/mol (18003.2117 without restraints) Performing minimization step: 623. Total energy = 17995.5985 kcal/mol (17986.4054 without restraints) Performing minimization step: 624. Total energy = 17978.8234 kcal/mol (17969.6360 without restraints) Performing minimization step: 625. Total energy = 17962.0851 kcal/mol (17952.9029 without restraints) Performing minimization step: 626. Total energy = 17945.3825 kcal/mol (17936.2057 without restraints) Performing minimization step: 627. Total energy = 17928.7163 kcal/mol (17919.5449 without restraints) Performing minimization step: 628. Total energy = 17912.0861 kcal/mol (17902.9200 without restraints) Performing minimization step: 629. Total energy = 17895.4920 kcal/mol (17886.3314 without restraints) Performing minimization step: 630. Total energy = 17878.9341 kcal/mol (17869.7788 without restraints) Performing minimization step: 631. Total energy = 17862.4120 kcal/mol (17853.2621 without restraints) Performing minimization step: 632. Total energy = 17845.9257 kcal/mol (17836.7811 without restraints) Performing minimization step: 633. Total energy = 17829.4748 kcal/mol (17820.3356 without restraints) Performing minimization step: 634. Total energy = 17813.0594 kcal/mol (17803.9255 without restraints) Performing minimization step: 635. Total energy = 17796.6794 kcal/mol (17787.5508 without restraints) Performing minimization step: 636. Total energy = 17780.3353 kcal/mol (17771.2120 without restraints) Performing minimization step: 637. Total energy = 17764.0257 kcal/mol (17754.9077 without restraints) Performing minimization step: 638. Total energy = 17747.7516 kcal/mol (17738.6389 without restraints) Performing minimization step: 639. Total energy = 17731.5130 kcal/mol (17722.4057 without restraints) Performing minimization step: 640. Total energy = 17715.3089 kcal/mol (17706.2068 without restraints) Performing minimization step: 641. Total energy = 17699.1396 kcal/mol (17690.0427 without restraints) Performing minimization step: 642. Total energy = 17683.0050 kcal/mol (17673.9133 without restraints) Performing minimization step: 643. Total energy = 17666.9051 kcal/mol (17657.8186 without restraints) Performing minimization step: 644. Total energy = 17650.8397 kcal/mol (17641.7585 without restraints) Performing minimization step: 645. Total energy = 17634.8091 kcal/mol (17625.7331 without restraints) Performing minimization step: 646. Total energy = 17618.8120 kcal/mol (17609.7412 without restraints) Performing minimization step: 647. Total energy = 17602.8495 kcal/mol (17593.7838 without restraints) Performing minimization step: 648. Total energy = 17586.9215 kcal/mol (17577.8610 without restraints) Performing minimization step: 649. Total energy = 17571.0276 kcal/mol (17561.9724 without restraints) Performing minimization step: 650. Total energy = 17555.1676 kcal/mol (17546.1175 without restraints) Performing minimization step: 651. Total energy = 17539.3416 kcal/mol (17530.2966 without restraints) Performing minimization step: 652. Total energy = 17523.5495 kcal/mol (17514.5097 without restraints) Performing minimization step: 653. Total energy = 17507.7909 kcal/mol (17498.7563 without restraints) Performing minimization step: 654. Total energy = 17492.0662 kcal/mol (17483.0366 without restraints) Performing minimization step: 655. Total energy = 17476.3752 kcal/mol (17467.3507 without restraints) Performing minimization step: 656. Total energy = 17460.7173 kcal/mol (17451.6979 without restraints) Performing minimization step: 657. Total energy = 17445.0928 kcal/mol (17436.0785 without restraints) Performing minimization step: 658. Total energy = 17429.5020 kcal/mol (17420.4927 without restraints) Performing minimization step: 659. Total energy = 17413.9437 kcal/mol (17404.9395 without restraints) Performing minimization step: 660. Total energy = 17398.4187 kcal/mol (17389.4197 without restraints) Performing minimization step: 661. Total energy = 17382.9267 kcal/mol (17373.9326 without restraints) Performing minimization step: 662. Total energy = 17367.4676 kcal/mol (17358.4787 without restraints) Performing minimization step: 663. Total energy = 17352.0412 kcal/mol (17343.0571 without restraints) Performing minimization step: 664. Total energy = 17336.6477 kcal/mol (17327.6686 without restraints) Performing minimization step: 665. Total energy = 17321.2866 kcal/mol (17312.3127 without restraints) Performing minimization step: 666. Total energy = 17305.9580 kcal/mol (17296.9891 without restraints) Performing minimization step: 667. Total energy = 17290.6621 kcal/mol (17281.6981 without restraints) Performing minimization step: 668. Total energy = 17275.3988 kcal/mol (17266.4399 without restraints) Performing minimization step: 669. Total energy = 17260.1677 kcal/mol (17251.2138 without restraints) Performing minimization step: 670. Total energy = 17244.9687 kcal/mol (17236.0197 without restraints) Performing minimization step: 671. Total energy = 17229.8020 kcal/mol (17220.8582 without restraints) Performing minimization step: 672. Total energy = 17214.6669 kcal/mol (17205.7278 without restraints) Performing minimization step: 673. Total energy = 17199.5635 kcal/mol (17190.6293 without restraints) Performing minimization step: 674. Total energy = 17184.4921 kcal/mol (17175.5629 without restraints) Performing minimization step: 675. Total energy = 17169.4527 kcal/mol (17160.5284 without restraints) Performing minimization step: 676. Total energy = 17154.4447 kcal/mol (17145.5253 without restraints) Performing minimization step: 677. Total energy = 17139.4689 kcal/mol (17130.5543 without restraints) Performing minimization step: 678. Total energy = 17124.5240 kcal/mol (17115.6143 without restraints) Performing minimization step: 679. Total energy = 17109.6108 kcal/mol (17100.7060 without restraints) Performing minimization step: 680. Total energy = 17094.7290 kcal/mol (17085.8291 without restraints) Performing minimization step: 681. Total energy = 17079.8786 kcal/mol (17070.9837 without restraints) Performing minimization step: 682. Total energy = 17065.0590 kcal/mol (17056.1688 without restraints) Performing minimization step: 683. Total energy = 17050.2708 kcal/mol (17041.3854 without restraints) Performing minimization step: 684. Total energy = 17035.5131 kcal/mol (17026.6325 without restraints) Performing minimization step: 685. Total energy = 17020.7866 kcal/mol (17011.9108 without restraints) Performing minimization step: 686. Total energy = 17006.0902 kcal/mol (16997.2193 without restraints) Performing minimization step: 687. Total energy = 16991.4245 kcal/mol (16982.5584 without restraints) Performing minimization step: 688. Total energy = 16976.7899 kcal/mol (16967.9286 without restraints) Performing minimization step: 689. Total energy = 16962.1849 kcal/mol (16953.3283 without restraints) Performing minimization step: 690. Total energy = 16947.6112 kcal/mol (16938.7595 without restraints) Performing minimization step: 691. Total energy = 16933.0678 kcal/mol (16924.2208 without restraints) Performing minimization step: 692. Total energy = 16918.5548 kcal/mol (16909.7126 without restraints) Performing minimization step: 693. Total energy = 16904.0720 kcal/mol (16895.2346 without restraints) Performing minimization step: 694. Total energy = 16889.6193 kcal/mol (16880.7868 without restraints) Performing minimization step: 695. Total energy = 16875.1971 kcal/mol (16866.3690 without restraints) Performing minimization step: 696. Total energy = 16860.8045 kcal/mol (16851.9811 without restraints) Performing minimization step: 697. Total energy = 16846.4416 kcal/mol (16837.6228 without restraints) Performing minimization step: 698. Total energy = 16832.1082 kcal/mol (16823.2943 without restraints) Performing minimization step: 699. Total energy = 16817.8044 kcal/mol (16808.9952 without restraints) Performing minimization step: 700. Total energy = 16803.5310 kcal/mol (16794.7265 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 701. Total energy = 16789.2873 kcal/mol (16780.4875 without restraints) Performing minimization step: 702. Total energy = 16775.0729 kcal/mol (16766.2777 without restraints) Performing minimization step: 703. Total energy = 16760.8873 kcal/mol (16752.0967 without restraints) Performing minimization step: 704. Total energy = 16746.7315 kcal/mol (16737.9456 without restraints) Performing minimization step: 705. Total energy = 16732.6052 kcal/mol (16723.8239 without restraints) Performing minimization step: 706. Total energy = 16718.5077 kcal/mol (16709.7310 without restraints) Performing minimization step: 707. Total energy = 16704.4392 kcal/mol (16695.6671 without restraints) Performing minimization step: 708. Total energy = 16690.3995 kcal/mol (16681.6322 without restraints) Performing minimization step: 709. Total energy = 16676.3888 kcal/mol (16667.6259 without restraints) Performing minimization step: 710. Total energy = 16662.4066 kcal/mol (16653.6484 without restraints) Performing minimization step: 711. Total energy = 16648.4535 kcal/mol (16639.7000 without restraints) Performing minimization step: 712. Total energy = 16634.5293 kcal/mol (16625.7804 without restraints) Performing minimization step: 713. Total energy = 16620.6330 kcal/mol (16611.8884 without restraints) Performing minimization step: 714. Total energy = 16606.7650 kcal/mol (16598.0251 without restraints) Performing minimization step: 715. Total energy = 16592.9261 kcal/mol (16584.1908 without restraints) Performing minimization step: 716. Total energy = 16579.1155 kcal/mol (16570.3847 without restraints) Performing minimization step: 717. Total energy = 16565.3333 kcal/mol (16556.6071 without restraints) Performing minimization step: 718. Total energy = 16551.5792 kcal/mol (16542.8576 without restraints) Performing minimization step: 719. Total energy = 16537.8532 kcal/mol (16529.1361 without restraints) Performing minimization step: 720. Total energy = 16524.1552 kcal/mol (16515.4425 without restraints) Performing minimization step: 721. Total energy = 16510.4852 kcal/mol (16501.7771 without restraints) Performing minimization step: 722. Total energy = 16496.8427 kcal/mol (16488.1391 without restraints) Performing minimization step: 723. Total energy = 16483.2284 kcal/mol (16474.5291 without restraints) Performing minimization step: 724. Total energy = 16469.6417 kcal/mol (16460.9470 without restraints) Performing minimization step: 725. Total energy = 16456.0826 kcal/mol (16447.3923 without restraints) Performing minimization step: 726. Total energy = 16442.5501 kcal/mol (16433.8643 without restraints) Performing minimization step: 727. Total energy = 16429.0460 kcal/mol (16420.3646 without restraints) Performing minimization step: 728. Total energy = 16415.5694 kcal/mol (16406.8924 without restraints) Performing minimization step: 729. Total energy = 16402.1199 kcal/mol (16393.4475 without restraints) Performing minimization step: 730. Total energy = 16388.6977 kcal/mol (16380.0295 without restraints) Performing minimization step: 731. Total energy = 16375.3025 kcal/mol (16366.6387 without restraints) Performing minimization step: 732. Total energy = 16361.9349 kcal/mol (16353.2757 without restraints) Performing minimization step: 733. Total energy = 16348.5939 kcal/mol (16339.9390 without restraints) Performing minimization step: 734. Total energy = 16335.2799 kcal/mol (16326.6295 without restraints) Performing minimization step: 735. Total energy = 16321.9929 kcal/mol (16313.3469 without restraints) Performing minimization step: 736. Total energy = 16308.7329 kcal/mol (16300.0913 without restraints) Performing minimization step: 737. Total energy = 16295.4991 kcal/mol (16286.8618 without restraints) Performing minimization step: 738. Total energy = 16282.2920 kcal/mol (16273.6590 without restraints) Performing minimization step: 739. Total energy = 16269.1115 kcal/mol (16260.4828 without restraints) Performing minimization step: 740. Total energy = 16255.9570 kcal/mol (16247.3327 without restraints) Performing minimization step: 741. Total energy = 16242.8297 kcal/mol (16234.2099 without restraints) Performing minimization step: 742. Total energy = 16229.7277 kcal/mol (16221.1122 without restraints) Performing minimization step: 743. Total energy = 16216.6533 kcal/mol (16208.0420 without restraints) Performing minimization step: 744. Total energy = 16203.6049 kcal/mol (16194.9980 without restraints) Performing minimization step: 745. Total energy = 16190.5826 kcal/mol (16181.9801 without restraints) Performing minimization step: 746. Total energy = 16177.5864 kcal/mol (16168.9881 without restraints) Performing minimization step: 747. Total energy = 16164.6157 kcal/mol (16156.0217 without restraints) Performing minimization step: 748. Total energy = 16151.6713 kcal/mol (16143.0815 without restraints) Performing minimization step: 749. Total energy = 16138.7521 kcal/mol (16130.1665 without restraints) Performing minimization step: 750. Total energy = 16125.8583 kcal/mol (16117.2770 without restraints) Performing minimization step: 751. Total energy = 16112.9920 kcal/mol (16104.4149 without restraints) Performing minimization step: 752. Total energy = 16100.1499 kcal/mol (16091.5771 without restraints) Performing minimization step: 753. Total energy = 16087.3333 kcal/mol (16078.7649 without restraints) Performing minimization step: 754. Total energy = 16074.5430 kcal/mol (16065.9788 without restraints) Performing minimization step: 755. Total energy = 16061.7779 kcal/mol (16053.2179 without restraints) Performing minimization step: 756. Total energy = 16049.0380 kcal/mol (16040.4822 without restraints) Performing minimization step: 757. Total energy = 16036.3231 kcal/mol (16027.7715 without restraints) Performing minimization step: 758. Total energy = 16023.6335 kcal/mol (16015.0862 without restraints) Performing minimization step: 759. Total energy = 16010.9690 kcal/mol (16002.4260 without restraints) Performing minimization step: 760. Total energy = 15998.3297 kcal/mol (15989.7908 without restraints) Performing minimization step: 761. Total energy = 15985.7151 kcal/mol (15977.1803 without restraints) Performing minimization step: 762. Total energy = 15973.1252 kcal/mol (15964.5945 without restraints) Performing minimization step: 763. Total energy = 15960.5599 kcal/mol (15952.0334 without restraints) Performing minimization step: 764. Total energy = 15948.0194 kcal/mol (15939.4970 without restraints) Performing minimization step: 765. Total energy = 15935.5038 kcal/mol (15926.9857 without restraints) Performing minimization step: 766. Total energy = 15923.0129 kcal/mol (15914.4989 without restraints) Performing minimization step: 767. Total energy = 15910.5463 kcal/mol (15902.0364 without restraints) Performing minimization step: 768. Total energy = 15898.1045 kcal/mol (15889.5988 without restraints) Performing minimization step: 769. Total energy = 15885.6873 kcal/mol (15877.1857 without restraints) Performing minimization step: 770. Total energy = 15873.2942 kcal/mol (15864.7968 without restraints) Performing minimization step: 771. Total energy = 15860.9254 kcal/mol (15852.4320 without restraints) Performing minimization step: 772. Total energy = 15848.5813 kcal/mol (15840.0921 without restraints) Performing minimization step: 773. Total energy = 15836.2608 kcal/mol (15827.7756 without restraints) Performing minimization step: 774. Total energy = 15823.9641 kcal/mol (15815.4831 without restraints) Performing minimization step: 775. Total energy = 15811.6914 kcal/mol (15803.2144 without restraints) Performing minimization step: 776. Total energy = 15799.4429 kcal/mol (15790.9701 without restraints) Performing minimization step: 777. Total energy = 15787.2185 kcal/mol (15778.7496 without restraints) Performing minimization step: 778. Total energy = 15775.0175 kcal/mol (15766.5527 without restraints) Performing minimization step: 779. Total energy = 15762.8403 kcal/mol (15754.3794 without restraints) Performing minimization step: 780. Total energy = 15750.6862 kcal/mol (15742.2295 without restraints) Performing minimization step: 781. Total energy = 15738.5557 kcal/mol (15730.1030 without restraints) Performing minimization step: 782. Total energy = 15726.4488 kcal/mol (15718.0001 without restraints) Performing minimization step: 783. Total energy = 15714.3650 kcal/mol (15705.9203 without restraints) Performing minimization step: 784. Total energy = 15702.3048 kcal/mol (15693.8642 without restraints) Performing minimization step: 785. Total energy = 15690.2684 kcal/mol (15681.8317 without restraints) Performing minimization step: 786. Total energy = 15678.2548 kcal/mol (15669.8221 without restraints) Performing minimization step: 787. Total energy = 15666.2638 kcal/mol (15657.8351 without restraints) Performing minimization step: 788. Total energy = 15654.2969 kcal/mol (15645.8722 without restraints) Performing minimization step: 789. Total energy = 15642.3528 kcal/mol (15633.9321 without restraints) Performing minimization step: 790. Total energy = 15630.4305 kcal/mol (15622.0137 without restraints) Performing minimization step: 791. Total energy = 15618.5324 kcal/mol (15610.1196 without restraints) Performing minimization step: 792. Total energy = 15606.6562 kcal/mol (15598.2474 without restraints) Performing minimization step: 793. Total energy = 15594.8035 kcal/mol (15586.3986 without restraints) Performing minimization step: 794. Total energy = 15582.9731 kcal/mol (15574.5721 without restraints) Performing minimization step: 795. Total energy = 15571.1656 kcal/mol (15562.7685 without restraints) Performing minimization step: 796. Total energy = 15559.3807 kcal/mol (15550.9877 without restraints) Performing minimization step: 797. Total energy = 15547.6183 kcal/mol (15539.2291 without restraints) Performing minimization step: 798. Total energy = 15535.8781 kcal/mol (15527.4928 without restraints) Performing minimization step: 799. Total energy = 15524.1597 kcal/mol (15515.7785 without restraints) Performing minimization step: 800. Total energy = 15512.4642 kcal/mol (15504.0867 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 801. Total energy = 15500.7913 kcal/mol (15492.4177 without restraints) Performing minimization step: 802. Total energy = 15489.1403 kcal/mol (15480.7706 without restraints) Performing minimization step: 803. Total energy = 15477.5113 kcal/mol (15469.1455 without restraints) Performing minimization step: 804. Total energy = 15465.9046 kcal/mol (15457.5428 without restraints) Performing minimization step: 805. Total energy = 15454.3209 kcal/mol (15445.9628 without restraints) Performing minimization step: 806. Total energy = 15442.7581 kcal/mol (15434.4039 without restraints) Performing minimization step: 807. Total energy = 15431.2169 kcal/mol (15422.8666 without restraints) Performing minimization step: 808. Total energy = 15419.6979 kcal/mol (15411.3515 without restraints) Performing minimization step: 809. Total energy = 15408.2002 kcal/mol (15399.8575 without restraints) Performing minimization step: 810. Total energy = 15396.7245 kcal/mol (15388.3857 without restraints) Performing minimization step: 811. Total energy = 15385.2697 kcal/mol (15376.9347 without restraints) Performing minimization step: 812. Total energy = 15373.8371 kcal/mol (15365.5058 without restraints) Performing minimization step: 813. Total energy = 15362.4259 kcal/mol (15354.0985 without restraints) Performing minimization step: 814. Total energy = 15351.0358 kcal/mol (15342.7122 without restraints) Performing minimization step: 815. Total energy = 15339.6673 kcal/mol (15331.3475 without restraints) Performing minimization step: 816. Total energy = 15328.3195 kcal/mol (15320.0033 without restraints) Performing minimization step: 817. Total energy = 15316.9929 kcal/mol (15308.6807 without restraints) Performing minimization step: 818. Total energy = 15305.6875 kcal/mol (15297.3791 without restraints) Performing minimization step: 819. Total energy = 15294.4036 kcal/mol (15286.0988 without restraints) Performing minimization step: 820. Total energy = 15283.1407 kcal/mol (15274.8398 without restraints) Performing minimization step: 821. Total energy = 15271.8990 kcal/mol (15263.6018 without restraints) Performing minimization step: 822. Total energy = 15260.6782 kcal/mol (15252.3848 without restraints) Performing minimization step: 823. Total energy = 15249.4785 kcal/mol (15241.1890 without restraints) Performing minimization step: 824. Total energy = 15238.2995 kcal/mol (15230.0136 without restraints) Performing minimization step: 825. Total energy = 15227.1411 kcal/mol (15218.8589 without restraints) Performing minimization step: 826. Total energy = 15216.0030 kcal/mol (15207.7245 without restraints) Performing minimization step: 827. Total energy = 15204.8852 kcal/mol (15196.6102 without restraints) Performing minimization step: 828. Total energy = 15193.7883 kcal/mol (15185.5173 without restraints) Performing minimization step: 829. Total energy = 15182.7122 kcal/mol (15174.4449 without restraints) Performing minimization step: 830. Total energy = 15171.6567 kcal/mol (15163.3931 without restraints) Performing minimization step: 831. Total energy = 15160.6216 kcal/mol (15152.3617 without restraints) Performing minimization step: 832. Total energy = 15149.6068 kcal/mol (15141.3506 without restraints) Performing minimization step: 833. Total energy = 15138.6121 kcal/mol (15130.3595 without restraints) Performing minimization step: 834. Total energy = 15127.6373 kcal/mol (15119.3884 without restraints) Performing minimization step: 835. Total energy = 15116.6828 kcal/mol (15108.4377 without restraints) Performing minimization step: 836. Total energy = 15105.7488 kcal/mol (15097.5074 without restraints) Performing minimization step: 837. Total energy = 15094.8348 kcal/mol (15086.5969 without restraints) Performing minimization step: 838. Total energy = 15083.9405 kcal/mol (15075.7062 without restraints) Performing minimization step: 839. Total energy = 15073.0665 kcal/mol (15064.8360 without restraints) Performing minimization step: 840. Total energy = 15062.2123 kcal/mol (15053.9853 without restraints) Performing minimization step: 841. Total energy = 15051.3777 kcal/mol (15043.1544 without restraints) Performing minimization step: 842. Total energy = 15040.5627 kcal/mol (15032.3431 without restraints) Performing minimization step: 843. Total energy = 15029.7672 kcal/mol (15021.5511 without restraints) Performing minimization step: 844. Total energy = 15018.9914 kcal/mol (15010.7790 without restraints) Performing minimization step: 845. Total energy = 15008.2352 kcal/mol (15000.0265 without restraints) Performing minimization step: 846. Total energy = 14997.4987 kcal/mol (14989.2934 without restraints) Performing minimization step: 847. Total energy = 14986.7813 kcal/mol (14978.5797 without restraints) Performing minimization step: 848. Total energy = 14976.0835 kcal/mol (14967.8855 without restraints) Performing minimization step: 849. Total energy = 14965.4053 kcal/mol (14957.2111 without restraints) Performing minimization step: 850. Total energy = 14954.7464 kcal/mol (14946.5555 without restraints) Performing minimization step: 851. Total energy = 14944.1062 kcal/mol (14935.9189 without restraints) Performing minimization step: 852. Total energy = 14933.4857 kcal/mol (14925.3020 without restraints) Performing minimization step: 853. Total energy = 14922.8836 kcal/mol (14914.7033 without restraints) Performing minimization step: 854. Total energy = 14912.3009 kcal/mol (14904.1244 without restraints) Performing minimization step: 855. Total energy = 14901.7373 kcal/mol (14893.5642 without restraints) Performing minimization step: 856. Total energy = 14891.1927 kcal/mol (14883.0233 without restraints) Performing minimization step: 857. Total energy = 14880.6671 kcal/mol (14872.5011 without restraints) Performing minimization step: 858. Total energy = 14870.1600 kcal/mol (14861.9976 without restraints) Performing minimization step: 859. Total energy = 14859.6720 kcal/mol (14851.5130 without restraints) Performing minimization step: 860. Total energy = 14849.2029 kcal/mol (14841.0475 without restraints) Performing minimization step: 861. Total energy = 14838.7518 kcal/mol (14830.5999 without restraints) Performing minimization step: 862. Total energy = 14828.3196 kcal/mol (14820.1712 without restraints) Performing minimization step: 863. Total energy = 14817.9062 kcal/mol (14809.7614 without restraints) Performing minimization step: 864. Total energy = 14807.5116 kcal/mol (14799.3703 without restraints) Performing minimization step: 865. Total energy = 14797.1351 kcal/mol (14788.9973 without restraints) Performing minimization step: 866. Total energy = 14786.7775 kcal/mol (14778.6431 without restraints) Performing minimization step: 867. Total energy = 14776.4377 kcal/mol (14768.3068 without restraints) Performing minimization step: 868. Total energy = 14766.1164 kcal/mol (14757.9888 without restraints) Performing minimization step: 869. Total energy = 14755.8132 kcal/mol (14747.6893 without restraints) Performing minimization step: 870. Total energy = 14745.5287 kcal/mol (14737.4084 without restraints) Performing minimization step: 871. Total energy = 14735.2623 kcal/mol (14727.1453 without restraints) Performing minimization step: 872. Total energy = 14725.0137 kcal/mol (14716.9002 without restraints) Performing minimization step: 873. Total energy = 14714.7827 kcal/mol (14706.6726 without restraints) Performing minimization step: 874. Total energy = 14704.5694 kcal/mol (14696.4629 without restraints) Performing minimization step: 875. Total energy = 14694.3745 kcal/mol (14686.2714 without restraints) Performing minimization step: 876. Total energy = 14684.1977 kcal/mol (14676.0979 without restraints) Performing minimization step: 877. Total energy = 14674.0386 kcal/mol (14665.9423 without restraints) Performing minimization step: 878. Total energy = 14663.8974 kcal/mol (14655.8044 without restraints) Performing minimization step: 879. Total energy = 14653.7739 kcal/mol (14645.6844 without restraints) Performing minimization step: 880. Total energy = 14643.6681 kcal/mol (14635.5820 without restraints) Performing minimization step: 881. Total energy = 14633.5799 kcal/mol (14625.4972 without restraints) Performing minimization step: 882. Total energy = 14623.5089 kcal/mol (14615.4296 without restraints) Performing minimization step: 883. Total energy = 14613.4563 kcal/mol (14605.3804 without restraints) Performing minimization step: 884. Total energy = 14603.4205 kcal/mol (14595.3480 without restraints) Performing minimization step: 885. Total energy = 14593.4024 kcal/mol (14585.3333 without restraints) Performing minimization step: 886. Total energy = 14583.4014 kcal/mol (14575.3357 without restraints) Performing minimization step: 887. Total energy = 14573.4179 kcal/mol (14565.3556 without restraints) Performing minimization step: 888. Total energy = 14563.4522 kcal/mol (14555.3932 without restraints) Performing minimization step: 889. Total energy = 14553.5035 kcal/mol (14545.4478 without restraints) Performing minimization step: 890. Total energy = 14543.5718 kcal/mol (14535.5195 without restraints) Performing minimization step: 891. Total energy = 14533.6572 kcal/mol (14525.6083 without restraints) Performing minimization step: 892. Total energy = 14523.7597 kcal/mol (14515.7141 without restraints) Performing minimization step: 893. Total energy = 14513.8790 kcal/mol (14505.8368 without restraints) Performing minimization step: 894. Total energy = 14504.0160 kcal/mol (14495.9771 without restraints) Performing minimization step: 895. Total energy = 14494.1693 kcal/mol (14486.1336 without restraints) Performing minimization step: 896. Total energy = 14484.3396 kcal/mol (14476.3073 without restraints) Performing minimization step: 897. Total energy = 14474.5264 kcal/mol (14466.4974 without restraints) Performing minimization step: 898. Total energy = 14464.7300 kcal/mol (14456.7045 without restraints) Performing minimization step: 899. Total energy = 14454.9507 kcal/mol (14446.9285 without restraints) Performing minimization step: 900. Total energy = 14445.1881 kcal/mol (14437.1692 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 901. Total energy = 14435.4417 kcal/mol (14427.4261 without restraints) Performing minimization step: 902. Total energy = 14425.7124 kcal/mol (14417.7000 without restraints) Performing minimization step: 903. Total energy = 14416.0000 kcal/mol (14407.9909 without restraints) Performing minimization step: 904. Total energy = 14406.3035 kcal/mol (14398.2978 without restraints) Performing minimization step: 905. Total energy = 14396.6237 kcal/mol (14388.6212 without restraints) Performing minimization step: 906. Total energy = 14386.9605 kcal/mol (14378.9613 without restraints) Performing minimization step: 907. Total energy = 14377.3133 kcal/mol (14369.3174 without restraints) Performing minimization step: 908. Total energy = 14367.6826 kcal/mol (14359.6900 without restraints) Performing minimization step: 909. Total energy = 14358.0684 kcal/mol (14350.0793 without restraints) Performing minimization step: 910. Total energy = 14348.4704 kcal/mol (14340.4844 without restraints) Performing minimization step: 911. Total energy = 14338.8885 kcal/mol (14330.9057 without restraints) Performing minimization step: 912. Total energy = 14329.3226 kcal/mol (14321.3430 without restraints) Performing minimization step: 913. Total energy = 14319.7733 kcal/mol (14311.7969 without restraints) Performing minimization step: 914. Total energy = 14310.2392 kcal/mol (14302.2661 without restraints) Performing minimization step: 915. Total energy = 14300.7212 kcal/mol (14292.7513 without restraints) Performing minimization step: 916. Total energy = 14291.2197 kcal/mol (14283.2530 without restraints) Performing minimization step: 917. Total energy = 14281.7339 kcal/mol (14273.7704 without restraints) Performing minimization step: 918. Total energy = 14272.2640 kcal/mol (14264.3039 without restraints) Performing minimization step: 919. Total energy = 14262.8096 kcal/mol (14254.8526 without restraints) Performing minimization step: 920. Total energy = 14253.3712 kcal/mol (14245.4175 without restraints) Performing minimization step: 921. Total energy = 14243.9486 kcal/mol (14235.9981 without restraints) Performing minimization step: 922. Total energy = 14234.5416 kcal/mol (14226.5943 without restraints) Performing minimization step: 923. Total energy = 14225.1505 kcal/mol (14217.2065 without restraints) Performing minimization step: 924. Total energy = 14215.7749 kcal/mol (14207.8340 without restraints) Performing minimization step: 925. Total energy = 14206.4149 kcal/mol (14198.4771 without restraints) Performing minimization step: 926. Total energy = 14197.0700 kcal/mol (14189.1355 without restraints) Performing minimization step: 927. Total energy = 14187.7407 kcal/mol (14179.8094 without restraints) Performing minimization step: 928. Total energy = 14178.4274 kcal/mol (14170.4992 without restraints) Performing minimization step: 929. Total energy = 14169.1289 kcal/mol (14161.2039 without restraints) Performing minimization step: 930. Total energy = 14159.8459 kcal/mol (14151.9241 without restraints) Performing minimization step: 931. Total energy = 14150.5786 kcal/mol (14142.6600 without restraints) Performing minimization step: 932. Total energy = 14141.3263 kcal/mol (14133.4109 without restraints) Performing minimization step: 933. Total energy = 14132.0891 kcal/mol (14124.1767 without restraints) Performing minimization step: 934. Total energy = 14122.8671 kcal/mol (14114.9580 without restraints) Performing minimization step: 935. Total energy = 14113.6603 kcal/mol (14105.7543 without restraints) Performing minimization step: 936. Total energy = 14104.4691 kcal/mol (14096.5663 without restraints) Performing minimization step: 937. Total energy = 14095.2923 kcal/mol (14087.3926 without restraints) Performing minimization step: 938. Total energy = 14086.1307 kcal/mol (14078.2341 without restraints) Performing minimization step: 939. Total energy = 14076.9843 kcal/mol (14069.0908 without restraints) Performing minimization step: 940. Total energy = 14067.8525 kcal/mol (14059.9621 without restraints) Performing minimization step: 941. Total energy = 14058.7354 kcal/mol (14050.8482 without restraints) Performing minimization step: 942. Total energy = 14049.6334 kcal/mol (14041.7494 without restraints) Performing minimization step: 943. Total energy = 14040.5467 kcal/mol (14032.6658 without restraints) Performing minimization step: 944. Total energy = 14031.4743 kcal/mol (14023.5965 without restraints) Performing minimization step: 945. Total energy = 14022.4164 kcal/mol (14014.5417 without restraints) Performing minimization step: 946. Total energy = 14013.3734 kcal/mol (14005.5018 without restraints) Performing minimization step: 947. Total energy = 14004.3454 kcal/mol (13996.4769 without restraints) Performing minimization step: 948. Total energy = 13995.3319 kcal/mol (13987.4665 without restraints) Performing minimization step: 949. Total energy = 13986.3321 kcal/mol (13978.4698 without restraints) Performing minimization step: 950. Total energy = 13977.3478 kcal/mol (13969.4886 without restraints) Performing minimization step: 951. Total energy = 13968.3778 kcal/mol (13960.5217 without restraints) Performing minimization step: 952. Total energy = 13959.4221 kcal/mol (13951.5690 without restraints) Performing minimization step: 953. Total energy = 13950.4801 kcal/mol (13942.6300 without restraints) Performing minimization step: 954. Total energy = 13941.5530 kcal/mol (13933.7061 without restraints) Performing minimization step: 955. Total energy = 13932.6402 kcal/mol (13924.7964 without restraints) Performing minimization step: 956. Total energy = 13923.7416 kcal/mol (13915.9009 without restraints) Performing minimization step: 957. Total energy = 13914.8579 kcal/mol (13907.0202 without restraints) Performing minimization step: 958. Total energy = 13905.9883 kcal/mol (13898.1536 without restraints) Performing minimization step: 959. Total energy = 13897.1325 kcal/mol (13889.3009 without restraints) Performing minimization step: 960. Total energy = 13888.2914 kcal/mol (13880.4628 without restraints) Performing minimization step: 961. Total energy = 13879.4643 kcal/mol (13871.6389 without restraints) Performing minimization step: 962. Total energy = 13870.6513 kcal/mol (13862.8290 without restraints) Performing minimization step: 963. Total energy = 13861.8522 kcal/mol (13854.0326 without restraints) Performing minimization step: 964. Total energy = 13853.0670 kcal/mol (13845.2506 without restraints) Performing minimization step: 965. Total energy = 13844.2958 kcal/mol (13836.4825 without restraints) Performing minimization step: 966. Total energy = 13835.5384 kcal/mol (13827.7280 without restraints) Performing minimization step: 967. Total energy = 13826.7947 kcal/mol (13818.9873 without restraints) Performing minimization step: 968. Total energy = 13818.0650 kcal/mol (13810.2607 without restraints) Performing minimization step: 969. Total energy = 13809.3490 kcal/mol (13801.5477 without restraints) Performing minimization step: 970. Total energy = 13800.6467 kcal/mol (13792.8483 without restraints) Performing minimization step: 971. Total energy = 13791.9582 kcal/mol (13784.1630 without restraints) Performing minimization step: 972. Total energy = 13783.2840 kcal/mol (13775.4918 without restraints) Performing minimization step: 973. Total energy = 13774.6231 kcal/mol (13766.8339 without restraints) Performing minimization step: 974. Total energy = 13765.9758 kcal/mol (13758.1896 without restraints) Performing minimization step: 975. Total energy = 13757.3420 kcal/mol (13749.5587 without restraints) Performing minimization step: 976. Total energy = 13748.7219 kcal/mol (13740.9416 without restraints) Performing minimization step: 977. Total energy = 13740.1153 kcal/mol (13732.3380 without restraints) Performing minimization step: 978. Total energy = 13731.5226 kcal/mol (13723.7485 without restraints) Performing minimization step: 979. Total energy = 13722.9427 kcal/mol (13715.1714 without restraints) Performing minimization step: 980. Total energy = 13714.3763 kcal/mol (13706.6080 without restraints) Performing minimization step: 981. Total energy = 13705.8233 kcal/mol (13698.0580 without restraints) Performing minimization step: 982. Total energy = 13697.2834 kcal/mol (13689.5210 without restraints) Performing minimization step: 983. Total energy = 13688.7569 kcal/mol (13680.9975 without restraints) Performing minimization step: 984. Total energy = 13680.2437 kcal/mol (13672.4872 without restraints) Performing minimization step: 985. Total energy = 13671.7432 kcal/mol (13663.9898 without restraints) Performing minimization step: 986. Total energy = 13663.2562 kcal/mol (13655.5057 without restraints) Performing minimization step: 987. Total energy = 13654.7830 kcal/mol (13647.0355 without restraints) Performing minimization step: 988. Total energy = 13646.3226 kcal/mol (13638.5780 without restraints) Performing minimization step: 989. Total energy = 13637.8756 kcal/mol (13630.1340 without restraints) Performing minimization step: 990. Total energy = 13629.4413 kcal/mol (13621.7026 without restraints) Performing minimization step: 991. Total energy = 13621.0200 kcal/mol (13613.2842 without restraints) Performing minimization step: 992. Total energy = 13612.6118 kcal/mol (13604.8789 without restraints) Performing minimization step: 993. Total energy = 13604.2167 kcal/mol (13596.4867 without restraints) Performing minimization step: 994. Total energy = 13595.8347 kcal/mol (13588.1077 without restraints) Performing minimization step: 995. Total energy = 13587.4655 kcal/mol (13579.7415 without restraints) Performing minimization step: 996. Total energy = 13579.1088 kcal/mol (13571.3876 without restraints) Performing minimization step: 997. Total energy = 13570.7649 kcal/mol (13563.0467 without restraints) Performing minimization step: 998. Total energy = 13562.4337 kcal/mol (13554.7184 without restraints) Performing minimization step: 999. Total energy = 13554.1156 kcal/mol (13546.4032 without restraints) Performing minimization step: 1000. Total energy = 13545.8101 kcal/mol (13538.1006 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 13537.5176 kcal/mol (13529.8111 without restraints) Performing minimization step: 1002. Total energy = 13529.2372 kcal/mol (13521.5336 without restraints) Performing minimization step: 1003. Total energy = 13520.9698 kcal/mol (13513.2691 without restraints) Performing minimization step: 1004. Total energy = 13512.7153 kcal/mol (13505.0175 without restraints) Performing minimization step: 1005. Total energy = 13504.4730 kcal/mol (13496.7780 without restraints) Performing minimization step: 1006. Total energy = 13496.2432 kcal/mol (13488.5512 without restraints) Performing minimization step: 1007. Total energy = 13488.0258 kcal/mol (13480.3366 without restraints) Performing minimization step: 1008. Total energy = 13479.8211 kcal/mol (13472.1348 without restraints) Performing minimization step: 1009. Total energy = 13471.6287 kcal/mol (13463.9453 without restraints) Performing minimization step: 1010. Total energy = 13463.4492 kcal/mol (13455.7687 without restraints) Performing minimization step: 1011. Total energy = 13455.2819 kcal/mol (13447.6042 without restraints) Performing minimization step: 1012. Total energy = 13447.1266 kcal/mol (13439.4518 without restraints) Performing minimization step: 1013. Total energy = 13438.9839 kcal/mol (13431.3120 without restraints) Performing minimization step: 1014. Total energy = 13430.8531 kcal/mol (13423.1841 without restraints) Performing minimization step: 1015. Total energy = 13422.7347 kcal/mol (13415.0685 without restraints) Performing minimization step: 1016. Total energy = 13414.6285 kcal/mol (13406.9652 without restraints) Performing minimization step: 1017. Total energy = 13406.5349 kcal/mol (13398.8745 without restraints) Performing minimization step: 1018. Total energy = 13398.4532 kcal/mol (13390.7955 without restraints) Performing minimization step: 1019. Total energy = 13390.3840 kcal/mol (13382.7293 without restraints) Performing minimization step: 1020. Total energy = 13382.3266 kcal/mol (13374.6747 without restraints) Performing minimization step: 1021. Total energy = 13374.2808 kcal/mol (13366.6318 without restraints) Performing minimization step: 1022. Total energy = 13366.2474 kcal/mol (13358.6012 without restraints) Performing minimization step: 1023. Total energy = 13358.2261 kcal/mol (13350.5827 without restraints) Performing minimization step: 1024. Total energy = 13350.2169 kcal/mol (13342.5763 without restraints) Performing minimization step: 1025. Total energy = 13342.2192 kcal/mol (13334.5815 without restraints) Performing minimization step: 1026. Total energy = 13334.2333 kcal/mol (13326.5985 without restraints) Performing minimization step: 1027. Total energy = 13326.2602 kcal/mol (13318.6283 without restraints) Performing minimization step: 1028. Total energy = 13318.2985 kcal/mol (13310.6694 without restraints) Performing minimization step: 1029. Total energy = 13310.3491 kcal/mol (13302.7229 without restraints) Performing minimization step: 1030. Total energy = 13302.4113 kcal/mol (13294.7878 without restraints) Performing minimization step: 1031. Total energy = 13294.4853 kcal/mol (13286.8646 without restraints) Performing minimization step: 1032. Total energy = 13286.5706 kcal/mol (13278.9526 without restraints) Performing minimization step: 1033. Total energy = 13278.6676 kcal/mol (13271.0525 without restraints) Performing minimization step: 1034. Total energy = 13270.7762 kcal/mol (13263.1639 without restraints) Performing minimization step: 1035. Total energy = 13262.8966 kcal/mol (13255.2870 without restraints) Performing minimization step: 1036. Total energy = 13255.0288 kcal/mol (13247.4222 without restraints) Performing minimization step: 1037. Total energy = 13247.1726 kcal/mol (13239.5687 without restraints) Performing minimization step: 1038. Total energy = 13239.3280 kcal/mol (13231.7271 without restraints) Performing minimization step: 1039. Total energy = 13231.4951 kcal/mol (13223.8968 without restraints) Performing minimization step: 1040. Total energy = 13223.6733 kcal/mol (13216.0778 without restraints) Performing minimization step: 1041. Total energy = 13215.8628 kcal/mol (13208.2700 without restraints) Performing minimization step: 1042. Total energy = 13208.0638 kcal/mol (13200.4739 without restraints) Performing minimization step: 1043. Total energy = 13200.2765 kcal/mol (13192.6892 without restraints) Performing minimization step: 1044. Total energy = 13192.5006 kcal/mol (13184.9162 without restraints) Performing minimization step: 1045. Total energy = 13184.7361 kcal/mol (13177.1544 without restraints) Performing minimization step: 1046. Total energy = 13176.9832 kcal/mol (13169.4044 without restraints) Performing minimization step: 1047. Total energy = 13169.2413 kcal/mol (13161.6653 without restraints) Performing minimization step: 1048. Total energy = 13161.5108 kcal/mol (13153.9376 without restraints) Performing minimization step: 1049. Total energy = 13153.7918 kcal/mol (13146.2214 without restraints) Performing minimization step: 1050. Total energy = 13146.0837 kcal/mol (13138.5159 without restraints) Performing minimization step: 1051. Total energy = 13138.3871 kcal/mol (13130.8224 without restraints) Performing minimization step: 1052. Total energy = 13130.7022 kcal/mol (13123.1401 without restraints) Performing minimization step: 1053. Total energy = 13123.0278 kcal/mol (13115.4684 without restraints) Performing minimization step: 1054. Total energy = 13115.3648 kcal/mol (13107.8081 without restraints) Performing minimization step: 1055. Total energy = 13107.7122 kcal/mol (13100.1583 without restraints) Performing minimization step: 1056. Total energy = 13100.0714 kcal/mol (13092.5204 without restraints) Performing minimization step: 1057. Total energy = 13092.4418 kcal/mol (13084.8935 without restraints) Performing minimization step: 1058. Total energy = 13084.8232 kcal/mol (13077.2776 without restraints) Performing minimization step: 1059. Total energy = 13077.2155 kcal/mol (13069.6726 without restraints) Performing minimization step: 1060. Total energy = 13069.6192 kcal/mol (13062.0791 without restraints) Performing minimization step: 1061. Total energy = 13062.0333 kcal/mol (13054.4959 without restraints) Performing minimization step: 1062. Total energy = 13054.4582 kcal/mol (13046.9235 without restraints) Performing minimization step: 1063. Total energy = 13046.8942 kcal/mol (13039.3622 without restraints) Performing minimization step: 1064. Total energy = 13039.3411 kcal/mol (13031.8119 without restraints) Performing minimization step: 1065. Total energy = 13031.7988 kcal/mol (13024.2722 without restraints) Performing minimization step: 1066. Total energy = 13024.2675 kcal/mol (13016.7438 without restraints) Performing minimization step: 1067. Total energy = 13016.7475 kcal/mol (13009.2264 without restraints) Performing minimization step: 1068. Total energy = 13009.2380 kcal/mol (13001.7197 without restraints) Performing minimization step: 1069. Total energy = 13001.7390 kcal/mol (12994.2234 without restraints) Performing minimization step: 1070. Total energy = 12994.2506 kcal/mol (12986.7377 without restraints) Performing minimization step: 1071. Total energy = 12986.7732 kcal/mol (12979.2631 without restraints) Performing minimization step: 1072. Total energy = 12979.3065 kcal/mol (12971.7992 without restraints) Performing minimization step: 1073. Total energy = 12971.8503 kcal/mol (12964.3456 without restraints) Performing minimization step: 1074. Total energy = 12964.4049 kcal/mol (12956.9029 without restraints) Performing minimization step: 1075. Total energy = 12956.9701 kcal/mol (12949.4710 without restraints) Performing minimization step: 1076. Total energy = 12949.5461 kcal/mol (12942.0497 without restraints) Performing minimization step: 1077. Total energy = 12942.1325 kcal/mol (12934.6386 without restraints) Performing minimization step: 1078. Total energy = 12934.7295 kcal/mol (12927.2383 without restraints) Performing minimization step: 1079. Total energy = 12927.3369 kcal/mol (12919.8484 without restraints) Performing minimization step: 1080. Total energy = 12919.9550 kcal/mol (12912.4691 without restraints) Performing minimization step: 1081. Total energy = 12912.5832 kcal/mol (12905.1001 without restraints) Performing minimization step: 1082. Total energy = 12905.2222 kcal/mol (12897.7418 without restraints) Performing minimization step: 1083. Total energy = 12897.8712 kcal/mol (12890.3935 without restraints) Performing minimization step: 1084. Total energy = 12890.5307 kcal/mol (12883.0555 without restraints) Performing minimization step: 1085. Total energy = 12883.2005 kcal/mol (12875.7282 without restraints) Performing minimization step: 1086. Total energy = 12875.8811 kcal/mol (12868.4114 without restraints) Performing minimization step: 1087. Total energy = 12868.5718 kcal/mol (12861.1048 without restraints) Performing minimization step: 1088. Total energy = 12861.2726 kcal/mol (12853.8083 without restraints) Performing minimization step: 1089. Total energy = 12853.9837 kcal/mol (12846.5222 without restraints) Performing minimization step: 1090. Total energy = 12846.7054 kcal/mol (12839.2465 without restraints) Performing minimization step: 1091. Total energy = 12839.4378 kcal/mol (12831.9814 without restraints) Performing minimization step: 1092. Total energy = 12832.1794 kcal/mol (12824.7259 without restraints) Performing minimization step: 1093. Total energy = 12824.9316 kcal/mol (12817.4807 without restraints) Performing minimization step: 1094. Total energy = 12817.6940 kcal/mol (12810.2458 without restraints) Performing minimization step: 1095. Total energy = 12810.4664 kcal/mol (12803.0208 without restraints) Performing minimization step: 1096. Total energy = 12803.2488 kcal/mol (12795.8059 without restraints) Performing minimization step: 1097. Total energy = 12796.0415 kcal/mol (12788.6015 without restraints) Performing minimization step: 1098. Total energy = 12788.8439 kcal/mol (12781.4063 without restraints) Performing minimization step: 1099. Total energy = 12781.6565 kcal/mol (12774.2216 without restraints) Performing minimization step: 1100. Total energy = 12774.4796 kcal/mol (12767.0473 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 12767.3124 kcal/mol (12759.8829 without restraints) Performing minimization step: 1102. Total energy = 12760.1558 kcal/mol (12752.7288 without restraints) Performing minimization step: 1103. Total energy = 12753.0085 kcal/mol (12745.5842 without restraints) Performing minimization step: 1104. Total energy = 12745.8717 kcal/mol (12738.4501 without restraints) Performing minimization step: 1105. Total energy = 12738.7445 kcal/mol (12731.3255 without restraints) Performing minimization step: 1106. Total energy = 12731.6274 kcal/mol (12724.2110 without restraints) Performing minimization step: 1107. Total energy = 12724.5199 kcal/mol (12717.1062 without restraints) Performing minimization step: 1108. Total energy = 12717.4223 kcal/mol (12710.0111 without restraints) Performing minimization step: 1109. Total energy = 12710.3343 kcal/mol (12702.9258 without restraints) Performing minimization step: 1110. Total energy = 12703.2562 kcal/mol (12695.8503 without restraints) Performing minimization step: 1111. Total energy = 12696.1881 kcal/mol (12688.7849 without restraints) Performing minimization step: 1112. Total energy = 12689.1297 kcal/mol (12681.7292 without restraints) Performing minimization step: 1113. Total energy = 12682.0811 kcal/mol (12674.6832 without restraints) Performing minimization step: 1114. Total energy = 12675.0421 kcal/mol (12667.6468 without restraints) Performing minimization step: 1115. Total energy = 12668.0127 kcal/mol (12660.6200 without restraints) Performing minimization step: 1116. Total energy = 12660.9934 kcal/mol (12653.6035 without restraints) Performing minimization step: 1117. Total energy = 12653.9844 kcal/mol (12646.5971 without restraints) Performing minimization step: 1118. Total energy = 12646.9844 kcal/mol (12639.5996 without restraints) Performing minimization step: 1119. Total energy = 12639.9942 kcal/mol (12632.6120 without restraints) Performing minimization step: 1120. Total energy = 12633.0131 kcal/mol (12625.6336 without restraints) Performing minimization step: 1121. Total energy = 12626.0419 kcal/mol (12618.6649 without restraints) Performing minimization step: 1122. Total energy = 12619.0801 kcal/mol (12611.7058 without restraints) Performing minimization step: 1123. Total energy = 12612.1281 kcal/mol (12604.7563 without restraints) Performing minimization step: 1124. Total energy = 12605.1859 kcal/mol (12597.8168 without restraints) Performing minimization step: 1125. Total energy = 12598.2533 kcal/mol (12590.8868 without restraints) Performing minimization step: 1126. Total energy = 12591.3300 kcal/mol (12583.9662 without restraints) Performing minimization step: 1127. Total energy = 12584.4158 kcal/mol (12577.0545 without restraints) Performing minimization step: 1128. Total energy = 12577.5109 kcal/mol (12570.1521 without restraints) Performing minimization step: 1129. Total energy = 12570.6155 kcal/mol (12563.2594 without restraints) Performing minimization step: 1130. Total energy = 12563.7300 kcal/mol (12556.3767 without restraints) Performing minimization step: 1131. Total energy = 12556.8539 kcal/mol (12549.5030 without restraints) Performing minimization step: 1132. Total energy = 12549.9870 kcal/mol (12542.6387 without restraints) Performing minimization step: 1133. Total energy = 12543.1293 kcal/mol (12535.7836 without restraints) Performing minimization step: 1134. Total energy = 12536.2810 kcal/mol (12528.9379 without restraints) Performing minimization step: 1135. Total energy = 12529.4419 kcal/mol (12522.1012 without restraints) Performing minimization step: 1136. Total energy = 12522.6118 kcal/mol (12515.2738 without restraints) Performing minimization step: 1137. Total energy = 12515.7912 kcal/mol (12508.4559 without restraints) Performing minimization step: 1138. Total energy = 12508.9801 kcal/mol (12501.6474 without restraints) Performing minimization step: 1139. Total energy = 12502.1783 kcal/mol (12494.8481 without restraints) Performing minimization step: 1140. Total energy = 12495.3861 kcal/mol (12488.0585 without restraints) Performing minimization step: 1141. Total energy = 12488.6027 kcal/mol (12481.2779 without restraints) Performing minimization step: 1142. Total energy = 12481.8284 kcal/mol (12474.5060 without restraints) Performing minimization step: 1143. Total energy = 12475.0631 kcal/mol (12467.7432 without restraints) Performing minimization step: 1144. Total energy = 12468.3064 kcal/mol (12460.9890 without restraints) Performing minimization step: 1145. Total energy = 12461.5593 kcal/mol (12454.2446 without restraints) Performing minimization step: 1146. Total energy = 12454.8217 kcal/mol (12447.5096 without restraints) Performing minimization step: 1147. Total energy = 12448.0924 kcal/mol (12440.7827 without restraints) Performing minimization step: 1148. Total energy = 12441.3724 kcal/mol (12434.0655 without restraints) Performing minimization step: 1149. Total energy = 12434.6618 kcal/mol (12427.3574 without restraints) Performing minimization step: 1150. Total energy = 12427.9599 kcal/mol (12420.6581 without restraints) Performing minimization step: 1151. Total energy = 12421.2675 kcal/mol (12413.9682 without restraints) Performing minimization step: 1152. Total energy = 12414.5841 kcal/mol (12407.2874 without restraints) Performing minimization step: 1153. Total energy = 12407.9096 kcal/mol (12400.6154 without restraints) Performing minimization step: 1154. Total energy = 12401.2439 kcal/mol (12393.9522 without restraints) Performing minimization step: 1155. Total energy = 12394.5870 kcal/mol (12387.2979 without restraints) Performing minimization step: 1156. Total energy = 12387.9388 kcal/mol (12380.6523 without restraints) Performing minimization step: 1157. Total energy = 12381.2998 kcal/mol (12374.0156 without restraints) Performing minimization step: 1158. Total energy = 12374.6695 kcal/mol (12367.3881 without restraints) Performing minimization step: 1159. Total energy = 12368.0485 kcal/mol (12360.7697 without restraints) Performing minimization step: 1160. Total energy = 12361.4358 kcal/mol (12354.1596 without restraints) Performing minimization step: 1161. Total energy = 12354.8327 kcal/mol (12347.5590 without restraints) Performing minimization step: 1162. Total energy = 12348.2377 kcal/mol (12340.9666 without restraints) Performing minimization step: 1163. Total energy = 12341.6518 kcal/mol (12334.3832 without restraints) Performing minimization step: 1164. Total energy = 12335.0742 kcal/mol (12327.8081 without restraints) Performing minimization step: 1165. Total energy = 12328.5053 kcal/mol (12321.2418 without restraints) Performing minimization step: 1166. Total energy = 12321.9461 kcal/mol (12314.6851 without restraints) Performing minimization step: 1167. Total energy = 12315.3952 kcal/mol (12308.1368 without restraints) Performing minimization step: 1168. Total energy = 12308.8531 kcal/mol (12301.5972 without restraints) Performing minimization step: 1169. Total energy = 12302.3196 kcal/mol (12295.0661 without restraints) Performing minimization step: 1170. Total energy = 12295.7942 kcal/mol (12288.5433 without restraints) Performing minimization step: 1171. Total energy = 12289.2780 kcal/mol (12282.0298 without restraints) Performing minimization step: 1172. Total energy = 12282.7707 kcal/mol (12275.5249 without restraints) Performing minimization step: 1173. Total energy = 12276.2719 kcal/mol (12269.0287 without restraints) Performing minimization step: 1174. Total energy = 12269.7814 kcal/mol (12262.5407 without restraints) Performing minimization step: 1175. Total energy = 12263.2997 kcal/mol (12256.0615 without restraints) Performing minimization step: 1176. Total energy = 12256.8264 kcal/mol (12249.5907 without restraints) Performing minimization step: 1177. Total energy = 12250.3615 kcal/mol (12243.1283 without restraints) Performing minimization step: 1178. Total energy = 12243.9054 kcal/mol (12236.6747 without restraints) Performing minimization step: 1179. Total energy = 12237.4576 kcal/mol (12230.2295 without restraints) Performing minimization step: 1180. Total energy = 12231.0187 kcal/mol (12223.7931 without restraints) Performing minimization step: 1181. Total energy = 12224.5883 kcal/mol (12217.3652 without restraints) Performing minimization step: 1182. Total energy = 12218.1658 kcal/mol (12210.9453 without restraints) Performing minimization step: 1183. Total energy = 12211.7515 kcal/mol (12204.5335 without restraints) Performing minimization step: 1184. Total energy = 12205.3459 kcal/mol (12198.1305 without restraints) Performing minimization step: 1185. Total energy = 12198.9484 kcal/mol (12191.7353 without restraints) Performing minimization step: 1186. Total energy = 12192.5599 kcal/mol (12185.3496 without restraints) Performing minimization step: 1187. Total energy = 12186.1797 kcal/mol (12178.9719 without restraints) Performing minimization step: 1188. Total energy = 12179.8078 kcal/mol (12172.6023 without restraints) Performing minimization step: 1189. Total energy = 12173.4446 kcal/mol (12166.2417 without restraints) Performing minimization step: 1190. Total energy = 12167.0894 kcal/mol (12159.8888 without restraints) Performing minimization step: 1191. Total energy = 12160.7421 kcal/mol (12153.5442 without restraints) Performing minimization step: 1192. Total energy = 12154.4038 kcal/mol (12147.2084 without restraints) Performing minimization step: 1193. Total energy = 12148.0737 kcal/mol (12140.8809 without restraints) Performing minimization step: 1194. Total energy = 12141.7521 kcal/mol (12134.5618 without restraints) Performing minimization step: 1195. Total energy = 12135.4384 kcal/mol (12128.2505 without restraints) Performing minimization step: 1196. Total energy = 12129.1328 kcal/mol (12121.9474 without restraints) Performing minimization step: 1197. Total energy = 12122.8353 kcal/mol (12115.6523 without restraints) Performing minimization step: 1198. Total energy = 12116.5460 kcal/mol (12109.3656 without restraints) Performing minimization step: 1199. Total energy = 12110.2656 kcal/mol (12103.0877 without restraints) Performing minimization step: 1200. Total energy = 12103.9930 kcal/mol (12096.8176 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 12097.7284 kcal/mol (12090.5555 without restraints) Performing minimization step: 1202. Total energy = 12091.4720 kcal/mol (12084.3016 without restraints) Performing minimization step: 1203. Total energy = 12085.2238 kcal/mol (12078.0559 without restraints) Performing minimization step: 1204. Total energy = 12078.9837 kcal/mol (12071.8182 without restraints) Performing minimization step: 1205. Total energy = 12072.7517 kcal/mol (12065.5887 without restraints) Performing minimization step: 1206. Total energy = 12066.5277 kcal/mol (12059.3673 without restraints) Performing minimization step: 1207. Total energy = 12060.3120 kcal/mol (12053.1540 without restraints) Performing minimization step: 1208. Total energy = 12054.1041 kcal/mol (12046.9486 without restraints) Performing minimization step: 1209. Total energy = 12047.9043 kcal/mol (12040.7513 without restraints) Performing minimization step: 1210. Total energy = 12041.7127 kcal/mol (12034.5620 without restraints) Performing minimization step: 1211. Total energy = 12035.5294 kcal/mol (12028.3814 without restraints) Performing minimization step: 1212. Total energy = 12029.3536 kcal/mol (12022.2081 without restraints) Performing minimization step: 1213. Total energy = 12023.1861 kcal/mol (12016.0431 without restraints) Performing minimization step: 1214. Total energy = 12017.0263 kcal/mol (12009.8857 without restraints) Performing minimization step: 1215. Total energy = 12010.8743 kcal/mol (12003.7361 without restraints) Performing minimization step: 1216. Total energy = 12004.7302 kcal/mol (11997.5946 without restraints) Performing minimization step: 1217. Total energy = 11998.5943 kcal/mol (11991.4611 without restraints) Performing minimization step: 1218. Total energy = 11992.4661 kcal/mol (11985.3354 without restraints) Performing minimization step: 1219. Total energy = 11986.3458 kcal/mol (11979.2175 without restraints) Performing minimization step: 1220. Total energy = 11980.2338 kcal/mol (11973.1080 without restraints) Performing minimization step: 1221. Total energy = 11974.1289 kcal/mol (11967.0055 without restraints) Performing minimization step: 1222. Total energy = 11968.0318 kcal/mol (11960.9108 without restraints) Performing minimization step: 1223. Total energy = 11961.9428 kcal/mol (11954.8244 without restraints) Performing minimization step: 1224. Total energy = 11955.8618 kcal/mol (11948.7459 without restraints) Performing minimization step: 1225. Total energy = 11949.7883 kcal/mol (11942.6748 without restraints) Performing minimization step: 1226. Total energy = 11943.7229 kcal/mol (11936.6119 without restraints) Performing minimization step: 1227. Total energy = 11937.6653 kcal/mol (11930.5566 without restraints) Performing minimization step: 1228. Total energy = 11931.6154 kcal/mol (11924.5093 without restraints) Performing minimization step: 1229. Total energy = 11925.5732 kcal/mol (11918.4695 without restraints) Performing minimization step: 1230. Total energy = 11919.5387 kcal/mol (11912.4376 without restraints) Performing minimization step: 1231. Total energy = 11913.5118 kcal/mol (11906.4130 without restraints) Performing minimization step: 1232. Total energy = 11907.4923 kcal/mol (11900.3961 without restraints) Performing minimization step: 1233. Total energy = 11901.4805 kcal/mol (11894.3867 without restraints) Performing minimization step: 1234. Total energy = 11895.4769 kcal/mol (11888.3855 without restraints) Performing minimization step: 1235. Total energy = 11889.4806 kcal/mol (11882.3917 without restraints) Performing minimization step: 1236. Total energy = 11883.4920 kcal/mol (11876.4056 without restraints) Performing minimization step: 1237. Total energy = 11877.5107 kcal/mol (11870.4266 without restraints) Performing minimization step: 1238. Total energy = 11871.5368 kcal/mol (11864.4553 without restraints) Performing minimization step: 1239. Total energy = 11865.5702 kcal/mol (11858.4911 without restraints) Performing minimization step: 1240. Total energy = 11859.6118 kcal/mol (11852.5351 without restraints) Performing minimization step: 1241. Total energy = 11853.6616 kcal/mol (11846.5873 without restraints) Performing minimization step: 1242. Total energy = 11847.7183 kcal/mol (11840.6465 without restraints) Performing minimization step: 1243. Total energy = 11841.7828 kcal/mol (11834.7134 without restraints) Performing minimization step: 1244. Total energy = 11835.8550 kcal/mol (11828.7882 without restraints) Performing minimization step: 1245. Total energy = 11829.9345 kcal/mol (11822.8700 without restraints) Performing minimization step: 1246. Total energy = 11824.0214 kcal/mol (11816.9594 without restraints) Performing minimization step: 1247. Total energy = 11818.1158 kcal/mol (11811.0562 without restraints) Performing minimization step: 1248. Total energy = 11812.2179 kcal/mol (11805.1608 without restraints) Performing minimization step: 1249. Total energy = 11806.3267 kcal/mol (11799.2720 without restraints) Performing minimization step: 1250. Total energy = 11800.4434 kcal/mol (11793.3912 without restraints) Performing minimization step: 1251. Total energy = 11794.5679 kcal/mol (11787.5181 without restraints) Performing minimization step: 1252. Total energy = 11788.6997 kcal/mol (11781.6523 without restraints) Performing minimization step: 1253. Total energy = 11782.8384 kcal/mol (11775.7935 without restraints) Performing minimization step: 1254. Total energy = 11776.9855 kcal/mol (11769.9430 without restraints) Performing minimization step: 1255. Total energy = 11771.1390 kcal/mol (11764.0989 without restraints) Performing minimization step: 1256. Total energy = 11765.2996 kcal/mol (11758.2619 without restraints) Performing minimization step: 1257. Total energy = 11759.4680 kcal/mol (11752.4327 without restraints) Performing minimization step: 1258. Total energy = 11753.6433 kcal/mol (11746.6104 without restraints) Performing minimization step: 1259. Total energy = 11747.8262 kcal/mol (11740.7958 without restraints) Performing minimization step: 1260. Total energy = 11742.0168 kcal/mol (11734.9888 without restraints) Performing minimization step: 1261. Total energy = 11736.2143 kcal/mol (11729.1887 without restraints) Performing minimization step: 1262. Total energy = 11730.4192 kcal/mol (11723.3961 without restraints) Performing minimization step: 1263. Total energy = 11724.6314 kcal/mol (11717.6107 without restraints) Performing minimization step: 1264. Total energy = 11718.8508 kcal/mol (11711.8325 without restraints) Performing minimization step: 1265. Total energy = 11713.0775 kcal/mol (11706.0616 without restraints) Performing minimization step: 1266. Total energy = 11707.3112 kcal/mol (11700.2979 without restraints) Performing minimization step: 1267. Total energy = 11701.5523 kcal/mol (11694.5411 without restraints) Performing minimization step: 1268. Total energy = 11695.8005 kcal/mol (11688.7919 without restraints) Performing minimization step: 1269. Total energy = 11690.0556 kcal/mol (11683.0492 without restraints) Performing minimization step: 1270. Total energy = 11684.3180 kcal/mol (11677.3142 without restraints) Performing minimization step: 1271. Total energy = 11678.5876 kcal/mol (11671.5861 without restraints) Performing minimization step: 1272. Total energy = 11672.8644 kcal/mol (11665.8654 without restraints) Performing minimization step: 1273. Total energy = 11667.1486 kcal/mol (11660.1520 without restraints) Performing minimization step: 1274. Total energy = 11661.4400 kcal/mol (11654.4458 without restraints) Performing minimization step: 1275. Total energy = 11655.7382 kcal/mol (11648.7465 without restraints) Performing minimization step: 1276. Total energy = 11650.0436 kcal/mol (11643.0543 without restraints) Performing minimization step: 1277. Total energy = 11644.3565 kcal/mol (11637.3696 without restraints) Performing minimization step: 1278. Total energy = 11638.6760 kcal/mol (11631.6915 without restraints) Performing minimization step: 1279. Total energy = 11633.0026 kcal/mol (11626.0205 without restraints) Performing minimization step: 1280. Total energy = 11627.3363 kcal/mol (11620.3566 without restraints) Performing minimization step: 1281. Total energy = 11621.6766 kcal/mol (11614.6993 without restraints) Performing minimization step: 1282. Total energy = 11616.0241 kcal/mol (11609.0493 without restraints) Performing minimization step: 1283. Total energy = 11610.3787 kcal/mol (11603.4062 without restraints) Performing minimization step: 1284. Total energy = 11604.7403 kcal/mol (11597.7702 without restraints) Performing minimization step: 1285. Total energy = 11599.1087 kcal/mol (11592.1409 without restraints) Performing minimization step: 1286. Total energy = 11593.4843 kcal/mol (11586.5190 without restraints) Performing minimization step: 1287. Total energy = 11587.8668 kcal/mol (11580.9039 without restraints) Performing minimization step: 1288. Total energy = 11582.2564 kcal/mol (11575.2959 without restraints) Performing minimization step: 1289. Total energy = 11576.6527 kcal/mol (11569.6946 without restraints) Performing minimization step: 1290. Total energy = 11571.0563 kcal/mol (11564.1006 without restraints) Performing minimization step: 1291. Total energy = 11565.4664 kcal/mol (11558.5131 without restraints) Performing minimization step: 1292. Total energy = 11559.8837 kcal/mol (11552.9328 without restraints) Performing minimization step: 1293. Total energy = 11554.3079 kcal/mol (11547.3593 without restraints) Performing minimization step: 1294. Total energy = 11548.7388 kcal/mol (11541.7926 without restraints) Performing minimization step: 1295. Total energy = 11543.1766 kcal/mol (11536.2329 without restraints) Performing minimization step: 1296. Total energy = 11537.6208 kcal/mol (11530.6794 without restraints) Performing minimization step: 1297. Total energy = 11532.0721 kcal/mol (11525.1331 without restraints) Performing minimization step: 1298. Total energy = 11526.5300 kcal/mol (11519.5933 without restraints) Performing minimization step: 1299. Total energy = 11520.9947 kcal/mol (11514.0605 without restraints) Performing minimization step: 1300. Total energy = 11515.4664 kcal/mol (11508.5344 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 11509.9451 kcal/mol (11503.0156 without restraints) Performing minimization step: 1302. Total energy = 11504.4298 kcal/mol (11497.5027 without restraints) Performing minimization step: 1303. Total energy = 11498.9218 kcal/mol (11491.9971 without restraints) Performing minimization step: 1304. Total energy = 11493.4204 kcal/mol (11486.4981 without restraints) Performing minimization step: 1305. Total energy = 11487.9256 kcal/mol (11481.0056 without restraints) Performing minimization step: 1306. Total energy = 11482.4380 kcal/mol (11475.5205 without restraints) Performing minimization step: 1307. Total energy = 11476.9573 kcal/mol (11470.0421 without restraints) Performing minimization step: 1308. Total energy = 11471.4827 kcal/mol (11464.5699 without restraints) Performing minimization step: 1309. Total energy = 11466.0146 kcal/mol (11459.1042 without restraints) Performing minimization step: 1310. Total energy = 11460.5534 kcal/mol (11453.6453 without restraints) Performing minimization step: 1311. Total energy = 11455.0995 kcal/mol (11448.1940 without restraints) Performing minimization step: 1312. Total energy = 11449.6521 kcal/mol (11442.7489 without restraints) Performing minimization step: 1313. Total energy = 11444.2105 kcal/mol (11437.3095 without restraints) Performing minimization step: 1314. Total energy = 11438.7758 kcal/mol (11431.8772 without restraints) Performing minimization step: 1315. Total energy = 11433.3476 kcal/mol (11426.4514 without restraints) Performing minimization step: 1316. Total energy = 11427.9263 kcal/mol (11421.0326 without restraints) Performing minimization step: 1317. Total energy = 11422.5117 kcal/mol (11415.6202 without restraints) Performing minimization step: 1318. Total energy = 11417.1035 kcal/mol (11410.2145 without restraints) Performing minimization step: 1319. Total energy = 11411.7017 kcal/mol (11404.8150 without restraints) Performing minimization step: 1320. Total energy = 11406.3065 kcal/mol (11399.4222 without restraints) Performing minimization step: 1321. Total energy = 11400.9179 kcal/mol (11394.0359 without restraints) Performing minimization step: 1322. Total energy = 11395.5356 kcal/mol (11388.6562 without restraints) Performing minimization step: 1323. Total energy = 11390.1605 kcal/mol (11383.2832 without restraints) Performing minimization step: 1324. Total energy = 11384.7913 kcal/mol (11377.9165 without restraints) Performing minimization step: 1325. Total energy = 11379.4288 kcal/mol (11372.5562 without restraints) Performing minimization step: 1326. Total energy = 11374.0726 kcal/mol (11367.2024 without restraints) Performing minimization step: 1327. Total energy = 11368.7226 kcal/mol (11361.8548 without restraints) Performing minimization step: 1328. Total energy = 11363.3793 kcal/mol (11356.5139 without restraints) Performing minimization step: 1329. Total energy = 11358.0425 kcal/mol (11351.1794 without restraints) Performing minimization step: 1330. Total energy = 11352.7122 kcal/mol (11345.8516 without restraints) Performing minimization step: 1331. Total energy = 11347.3883 kcal/mol (11340.5299 without restraints) Performing minimization step: 1332. Total energy = 11342.0711 kcal/mol (11335.2150 without restraints) Performing minimization step: 1333. Total energy = 11336.7599 kcal/mol (11329.9062 without restraints) Performing minimization step: 1334. Total energy = 11331.4554 kcal/mol (11324.6041 without restraints) Performing minimization step: 1335. Total energy = 11326.1572 kcal/mol (11319.3082 without restraints) Performing minimization step: 1336. Total energy = 11320.8652 kcal/mol (11314.0185 without restraints) Performing minimization step: 1337. Total energy = 11315.5798 kcal/mol (11308.7355 without restraints) Performing minimization step: 1338. Total energy = 11310.3003 kcal/mol (11303.4584 without restraints) Performing minimization step: 1339. Total energy = 11305.0268 kcal/mol (11298.1872 without restraints) Performing minimization step: 1340. Total energy = 11299.7602 kcal/mol (11292.9230 without restraints) Performing minimization step: 1341. Total energy = 11294.4998 kcal/mol (11287.6649 without restraints) Performing minimization step: 1342. Total energy = 11289.2456 kcal/mol (11282.4130 without restraints) Performing minimization step: 1343. Total energy = 11283.9978 kcal/mol (11277.1675 without restraints) Performing minimization step: 1344. Total energy = 11278.7560 kcal/mol (11271.9281 without restraints) Performing minimization step: 1345. Total energy = 11273.5208 kcal/mol (11266.6953 without restraints) Performing minimization step: 1346. Total energy = 11268.2915 kcal/mol (11261.4683 without restraints) Performing minimization step: 1347. Total energy = 11263.0683 kcal/mol (11256.2474 without restraints) Performing minimization step: 1348. Total energy = 11257.8514 kcal/mol (11251.0329 without restraints) Performing minimization step: 1349. Total energy = 11252.6406 kcal/mol (11245.8244 without restraints) Performing minimization step: 1350. Total energy = 11247.4364 kcal/mol (11240.6227 without restraints) Performing minimization step: 1351. Total energy = 11242.2386 kcal/mol (11235.4271 without restraints) Performing minimization step: 1352. Total energy = 11237.0467 kcal/mol (11230.2375 without restraints) Performing minimization step: 1353. Total energy = 11231.8605 kcal/mol (11225.0537 without restraints) Performing minimization step: 1354. Total energy = 11226.6809 kcal/mol (11219.8764 without restraints) Performing minimization step: 1355. Total energy = 11221.5075 kcal/mol (11214.7055 without restraints) Performing minimization step: 1356. Total energy = 11216.3403 kcal/mol (11209.5405 without restraints) Performing minimization step: 1357. Total energy = 11211.1794 kcal/mol (11204.3819 without restraints) Performing minimization step: 1358. Total energy = 11206.0243 kcal/mol (11199.2292 without restraints) Performing minimization step: 1359. Total energy = 11200.8751 kcal/mol (11194.0823 without restraints) Performing minimization step: 1360. Total energy = 11195.7320 kcal/mol (11188.9415 without restraints) Performing minimization step: 1361. Total energy = 11190.5950 kcal/mol (11183.8068 without restraints) Performing minimization step: 1362. Total energy = 11185.4640 kcal/mol (11178.6782 without restraints) Performing minimization step: 1363. Total energy = 11180.3393 kcal/mol (11173.5559 without restraints) Performing minimization step: 1364. Total energy = 11175.2202 kcal/mol (11168.4391 without restraints) Performing minimization step: 1365. Total energy = 11170.1079 kcal/mol (11163.3290 without restraints) Performing minimization step: 1366. Total energy = 11165.0011 kcal/mol (11158.2248 without restraints) Performing minimization step: 1367. Total energy = 11159.9007 kcal/mol (11153.1265 without restraints) Performing minimization step: 1368. Total energy = 11154.8062 kcal/mol (11148.0344 without restraints) Performing minimization step: 1369. Total energy = 11149.7172 kcal/mol (11142.9477 without restraints) Performing minimization step: 1370. Total energy = 11144.6348 kcal/mol (11137.8677 without restraints) Performing minimization step: 1371. Total energy = 11139.5583 kcal/mol (11132.7934 without restraints) Performing minimization step: 1372. Total energy = 11134.4880 kcal/mol (11127.7257 without restraints) Performing minimization step: 1373. Total energy = 11129.4238 kcal/mol (11122.6635 without restraints) Performing minimization step: 1374. Total energy = 11124.3649 kcal/mol (11117.6068 without restraints) Performing minimization step: 1375. Total energy = 11119.3119 kcal/mol (11112.5563 without restraints) Performing minimization step: 1376. Total energy = 11114.2650 kcal/mol (11107.5117 without restraints) Performing minimization step: 1377. Total energy = 11109.2238 kcal/mol (11102.4728 without restraints) Performing minimization step: 1378. Total energy = 11104.1887 kcal/mol (11097.4400 without restraints) Performing minimization step: 1379. Total energy = 11099.1594 kcal/mol (11092.4131 without restraints) Performing minimization step: 1380. Total energy = 11094.1367 kcal/mol (11087.3926 without restraints) Performing minimization step: 1381. Total energy = 11089.1196 kcal/mol (11082.3779 without restraints) Performing minimization step: 1382. Total energy = 11084.1080 kcal/mol (11077.3686 without restraints) Performing minimization step: 1383. Total energy = 11079.1021 kcal/mol (11072.3650 without restraints) Performing minimization step: 1384. Total energy = 11074.1022 kcal/mol (11067.3674 without restraints) Performing minimization step: 1385. Total energy = 11069.1081 kcal/mol (11062.3756 without restraints) Performing minimization step: 1386. Total energy = 11064.1197 kcal/mol (11057.3896 without restraints) Performing minimization step: 1387. Total energy = 11059.1372 kcal/mol (11052.4094 without restraints) Performing minimization step: 1388. Total energy = 11054.1601 kcal/mol (11047.4344 without restraints) Performing minimization step: 1389. Total energy = 11049.1893 kcal/mol (11042.4661 without restraints) Performing minimization step: 1390. Total energy = 11044.2242 kcal/mol (11037.5033 without restraints) Performing minimization step: 1391. Total energy = 11039.2646 kcal/mol (11032.5457 without restraints) Performing minimization step: 1392. Total energy = 11034.3108 kcal/mol (11027.5945 without restraints) Performing minimization step: 1393. Total energy = 11029.3630 kcal/mol (11022.6491 without restraints) Performing minimization step: 1394. Total energy = 11024.4211 kcal/mol (11017.7094 without restraints) Performing minimization step: 1395. Total energy = 11019.4846 kcal/mol (11012.7751 without restraints) Performing minimization step: 1396. Total energy = 11014.5547 kcal/mol (11007.8475 without restraints) Performing minimization step: 1397. Total energy = 11009.6296 kcal/mol (11002.9248 without restraints) Performing minimization step: 1398. Total energy = 11004.7109 kcal/mol (10998.0084 without restraints) Performing minimization step: 1399. Total energy = 10999.7973 kcal/mol (10993.0970 without restraints) Performing minimization step: 1400. Total energy = 10994.8896 kcal/mol (10988.1918 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 10989.9872 kcal/mol (10983.2916 without restraints) Performing minimization step: 1402. Total energy = 10985.0903 kcal/mol (10978.3970 without restraints) Performing minimization step: 1403. Total energy = 10980.1994 kcal/mol (10973.5084 without restraints) Performing minimization step: 1404. Total energy = 10975.3140 kcal/mol (10968.6252 without restraints) Performing minimization step: 1405. Total energy = 10970.4341 kcal/mol (10963.7477 without restraints) Performing minimization step: 1406. Total energy = 10965.5599 kcal/mol (10958.8758 without restraints) Performing minimization step: 1407. Total energy = 10960.6912 kcal/mol (10954.0091 without restraints) Performing minimization step: 1408. Total energy = 10955.8279 kcal/mol (10949.1483 without restraints) Performing minimization step: 1409. Total energy = 10950.9703 kcal/mol (10944.2930 without restraints) Performing minimization step: 1410. Total energy = 10946.1184 kcal/mol (10939.4435 without restraints) Performing minimization step: 1411. Total energy = 10941.2723 kcal/mol (10934.5997 without restraints) Performing minimization step: 1412. Total energy = 10936.4312 kcal/mol (10929.7607 without restraints) Performing minimization step: 1413. Total energy = 10931.5959 kcal/mol (10924.9278 without restraints) Performing minimization step: 1414. Total energy = 10926.7665 kcal/mol (10920.1007 without restraints) Performing minimization step: 1415. Total energy = 10921.9429 kcal/mol (10915.2793 without restraints) Performing minimization step: 1416. Total energy = 10917.1252 kcal/mol (10910.4640 without restraints) Performing minimization step: 1417. Total energy = 10912.3122 kcal/mol (10905.6532 without restraints) Performing minimization step: 1418. Total energy = 10907.5046 kcal/mol (10900.8479 without restraints) Performing minimization step: 1419. Total energy = 10902.7025 kcal/mol (10896.0481 without restraints) Performing minimization step: 1420. Total energy = 10897.9057 kcal/mol (10891.2536 without restraints) Performing minimization step: 1421. Total energy = 10893.1144 kcal/mol (10886.4645 without restraints) Performing minimization step: 1422. Total energy = 10888.3287 kcal/mol (10881.6812 without restraints) Performing minimization step: 1423. Total energy = 10883.5484 kcal/mol (10876.9031 without restraints) Performing minimization step: 1424. Total energy = 10878.7734 kcal/mol (10872.1304 without restraints) Performing minimization step: 1425. Total energy = 10874.0036 kcal/mol (10867.3629 without restraints) Performing minimization step: 1426. Total energy = 10869.2397 kcal/mol (10862.6012 without restraints) Performing minimization step: 1427. Total energy = 10864.4816 kcal/mol (10857.8454 without restraints) Performing minimization step: 1428. Total energy = 10859.7287 kcal/mol (10853.0948 without restraints) Performing minimization step: 1429. Total energy = 10854.9813 kcal/mol (10848.3498 without restraints) Performing minimization step: 1430. Total energy = 10850.2392 kcal/mol (10843.6099 without restraints) Performing minimization step: 1431. Total energy = 10845.5022 kcal/mol (10838.8751 without restraints) Performing minimization step: 1432. Total energy = 10840.7706 kcal/mol (10834.1458 without restraints) Performing minimization step: 1433. Total energy = 10836.0444 kcal/mol (10829.4219 without restraints) Performing minimization step: 1434. Total energy = 10831.3234 kcal/mol (10824.7031 without restraints) Performing minimization step: 1435. Total energy = 10826.6076 kcal/mol (10819.9897 without restraints) Performing minimization step: 1436. Total energy = 10821.8972 kcal/mol (10815.2815 without restraints) Performing minimization step: 1437. Total energy = 10817.1924 kcal/mol (10810.5789 without restraints) Performing minimization step: 1438. Total energy = 10812.4928 kcal/mol (10805.8818 without restraints) Performing minimization step: 1439. Total energy = 10807.7982 kcal/mol (10801.1893 without restraints) Performing minimization step: 1440. Total energy = 10803.1090 kcal/mol (10796.5024 without restraints) Performing minimization step: 1441. Total energy = 10798.4249 kcal/mol (10791.8205 without restraints) Performing minimization step: 1442. Total energy = 10793.7462 kcal/mol (10787.1441 without restraints) Performing minimization step: 1443. Total energy = 10789.0725 kcal/mol (10782.4727 without restraints) Performing minimization step: 1444. Total energy = 10784.4043 kcal/mol (10777.8068 without restraints) Performing minimization step: 1445. Total energy = 10779.7413 kcal/mol (10773.1459 without restraints) Performing minimization step: 1446. Total energy = 10775.0835 kcal/mol (10768.4904 without restraints) Performing minimization step: 1447. Total energy = 10770.4310 kcal/mol (10763.8402 without restraints) Performing minimization step: 1448. Total energy = 10765.7836 kcal/mol (10759.1950 without restraints) Performing minimization step: 1449. Total energy = 10761.1418 kcal/mol (10754.5557 without restraints) Performing minimization step: 1450. Total energy = 10756.5053 kcal/mol (10749.9213 without restraints) Performing minimization step: 1451. Total energy = 10751.8737 kcal/mol (10745.2919 without restraints) Performing minimization step: 1452. Total energy = 10747.2469 kcal/mol (10740.6675 without restraints) Performing minimization step: 1453. Total energy = 10742.6262 kcal/mol (10736.0489 without restraints) Performing minimization step: 1454. Total energy = 10738.0100 kcal/mol (10731.4352 without restraints) Performing minimization step: 1455. Total energy = 10733.3993 kcal/mol (10726.8267 without restraints) Performing minimization step: 1456. Total energy = 10728.7934 kcal/mol (10722.2228 without restraints) Performing minimization step: 1457. Total energy = 10724.1924 kcal/mol (10717.6242 without restraints) Performing minimization step: 1458. Total energy = 10719.5965 kcal/mol (10713.0308 without restraints) Performing minimization step: 1459. Total energy = 10715.0062 kcal/mol (10708.4425 without restraints) Performing minimization step: 1460. Total energy = 10710.4210 kcal/mol (10703.8596 without restraints) Performing minimization step: 1461. Total energy = 10705.8406 kcal/mol (10699.2814 without restraints) Performing minimization step: 1462. Total energy = 10701.2654 kcal/mol (10694.7085 without restraints) Performing minimization step: 1463. Total energy = 10696.6948 kcal/mol (10690.1401 without restraints) Performing minimization step: 1464. Total energy = 10692.1296 kcal/mol (10685.5772 without restraints) Performing minimization step: 1465. Total energy = 10687.5695 kcal/mol (10681.0193 without restraints) Performing minimization step: 1466. Total energy = 10683.0144 kcal/mol (10676.4666 without restraints) Performing minimization step: 1467. Total energy = 10678.4644 kcal/mol (10671.9188 without restraints) Performing minimization step: 1468. Total energy = 10673.9197 kcal/mol (10667.3762 without restraints) Performing minimization step: 1469. Total energy = 10669.3793 kcal/mol (10662.8381 without restraints) Performing minimization step: 1470. Total energy = 10664.8443 kcal/mol (10658.3053 without restraints) Performing minimization step: 1471. Total energy = 10660.3143 kcal/mol (10653.7775 without restraints) Performing minimization step: 1472. Total energy = 10655.7889 kcal/mol (10649.2545 without restraints) Performing minimization step: 1473. Total energy = 10651.2683 kcal/mol (10644.7361 without restraints) Performing minimization step: 1474. Total energy = 10646.7531 kcal/mol (10640.2231 without restraints) Performing minimization step: 1475. Total energy = 10642.2431 kcal/mol (10635.7154 without restraints) Performing minimization step: 1476. Total energy = 10637.7382 kcal/mol (10631.2129 without restraints) Performing minimization step: 1477. Total energy = 10633.2387 kcal/mol (10626.7155 without restraints) Performing minimization step: 1478. Total energy = 10628.7439 kcal/mol (10622.2229 without restraints) Performing minimization step: 1479. Total energy = 10624.2538 kcal/mol (10617.7350 without restraints) Performing minimization step: 1480. Total energy = 10619.7687 kcal/mol (10613.2523 without restraints) Performing minimization step: 1481. Total energy = 10615.2883 kcal/mol (10608.7740 without restraints) Performing minimization step: 1482. Total energy = 10610.8126 kcal/mol (10604.3006 without restraints) Performing minimization step: 1483. Total energy = 10606.3420 kcal/mol (10599.8322 without restraints) Performing minimization step: 1484. Total energy = 10601.8762 kcal/mol (10595.3687 without restraints) Performing minimization step: 1485. Total energy = 10597.4155 kcal/mol (10590.9102 without restraints) Performing minimization step: 1486. Total energy = 10592.9598 kcal/mol (10586.4567 without restraints) Performing minimization step: 1487. Total energy = 10588.5088 kcal/mol (10582.0080 without restraints) Performing minimization step: 1488. Total energy = 10584.0627 kcal/mol (10577.5640 without restraints) Performing minimization step: 1489. Total energy = 10579.6213 kcal/mol (10573.1249 without restraints) Performing minimization step: 1490. Total energy = 10575.1848 kcal/mol (10568.6907 without restraints) Performing minimization step: 1491. Total energy = 10570.7529 kcal/mol (10564.2610 without restraints) Performing minimization step: 1492. Total energy = 10566.3260 kcal/mol (10559.8363 without restraints) Performing minimization step: 1493. Total energy = 10561.9045 kcal/mol (10555.4171 without restraints) Performing minimization step: 1494. Total energy = 10557.4871 kcal/mol (10551.0018 without restraints) Performing minimization step: 1495. Total energy = 10553.0750 kcal/mol (10546.5920 without restraints) Performing minimization step: 1496. Total energy = 10548.6673 kcal/mol (10542.1864 without restraints) Performing minimization step: 1497. Total energy = 10544.2642 kcal/mol (10537.7857 without restraints) Performing minimization step: 1498. Total energy = 10539.8660 kcal/mol (10533.3897 without restraints) Performing minimization step: 1499. Total energy = 10535.4726 kcal/mol (10528.9985 without restraints) Performing minimization step: 1500. Total energy = 10531.0841 kcal/mol (10524.6122 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 10526.7002 kcal/mol (10520.2306 without restraints) Performing minimization step: 1502. Total energy = 10522.3208 kcal/mol (10515.8532 without restraints) Performing minimization step: 1503. Total energy = 10517.9459 kcal/mol (10511.4807 without restraints) Performing minimization step: 1504. Total energy = 10513.5768 kcal/mol (10507.1138 without restraints) Performing minimization step: 1505. Total energy = 10509.2118 kcal/mol (10502.7511 without restraints) Performing minimization step: 1506. Total energy = 10504.8517 kcal/mol (10498.3931 without restraints) Performing minimization step: 1507. Total energy = 10500.4967 kcal/mol (10494.0403 without restraints) Performing minimization step: 1508. Total energy = 10496.1460 kcal/mol (10489.6919 without restraints) Performing minimization step: 1509. Total energy = 10491.8005 kcal/mol (10485.3486 without restraints) Performing minimization step: 1510. Total energy = 10487.4586 kcal/mol (10481.0090 without restraints) Performing minimization step: 1511. Total energy = 10483.1220 kcal/mol (10476.6745 without restraints) Performing minimization step: 1512. Total energy = 10478.7903 kcal/mol (10472.3450 without restraints) Performing minimization step: 1513. Total energy = 10474.4623 kcal/mol (10468.0193 without restraints) Performing minimization step: 1514. Total energy = 10470.1401 kcal/mol (10463.6992 without restraints) Performing minimization step: 1515. Total energy = 10465.8220 kcal/mol (10459.3835 without restraints) Performing minimization step: 1516. Total energy = 10461.5081 kcal/mol (10455.0717 without restraints) Performing minimization step: 1517. Total energy = 10457.1992 kcal/mol (10450.7651 without restraints) Performing minimization step: 1518. Total energy = 10452.8949 kcal/mol (10446.4630 without restraints) Performing minimization step: 1519. Total energy = 10448.5950 kcal/mol (10442.1652 without restraints) Performing minimization step: 1520. Total energy = 10444.2998 kcal/mol (10437.8723 without restraints) Performing minimization step: 1521. Total energy = 10440.0091 kcal/mol (10433.5838 without restraints) Performing minimization step: 1522. Total energy = 10435.7230 kcal/mol (10429.2998 without restraints) Performing minimization step: 1523. Total energy = 10431.4416 kcal/mol (10425.0207 without restraints) Performing minimization step: 1524. Total energy = 10427.1647 kcal/mol (10420.7460 without restraints) Performing minimization step: 1525. Total energy = 10422.8926 kcal/mol (10416.4762 without restraints) Performing minimization step: 1526. Total energy = 10418.6250 kcal/mol (10412.2107 without restraints) Performing minimization step: 1527. Total energy = 10414.3621 kcal/mol (10407.9502 without restraints) Performing minimization step: 1528. Total energy = 10410.1037 kcal/mol (10403.6939 without restraints) Performing minimization step: 1529. Total energy = 10405.8498 kcal/mol (10399.4423 without restraints) Performing minimization step: 1530. Total energy = 10401.6001 kcal/mol (10395.1947 without restraints) Performing minimization step: 1531. Total energy = 10397.3549 kcal/mol (10390.9516 without restraints) Performing minimization step: 1532. Total energy = 10393.1142 kcal/mol (10386.7130 without restraints) Performing minimization step: 1533. Total energy = 10388.8777 kcal/mol (10382.4789 without restraints) Performing minimization step: 1534. Total energy = 10384.6462 kcal/mol (10378.2496 without restraints) Performing minimization step: 1535. Total energy = 10380.4194 kcal/mol (10374.0250 without restraints) Performing minimization step: 1536. Total energy = 10376.1971 kcal/mol (10369.8047 without restraints) Performing minimization step: 1537. Total energy = 10371.9788 kcal/mol (10365.5888 without restraints) Performing minimization step: 1538. Total energy = 10367.7647 kcal/mol (10361.3769 without restraints) Performing minimization step: 1539. Total energy = 10363.5557 kcal/mol (10357.1700 without restraints) Performing minimization step: 1540. Total energy = 10359.3510 kcal/mol (10352.9675 without restraints) Performing minimization step: 1541. Total energy = 10355.1507 kcal/mol (10348.7696 without restraints) Performing minimization step: 1542. Total energy = 10350.9551 kcal/mol (10344.5760 without restraints) Performing minimization step: 1543. Total energy = 10346.7638 kcal/mol (10340.3869 without restraints) Performing minimization step: 1544. Total energy = 10342.5764 kcal/mol (10336.2018 without restraints) Performing minimization step: 1545. Total energy = 10338.3939 kcal/mol (10332.0214 without restraints) Performing minimization step: 1546. Total energy = 10334.2158 kcal/mol (10327.8455 without restraints) Performing minimization step: 1547. Total energy = 10330.0419 kcal/mol (10323.6738 without restraints) Performing minimization step: 1548. Total energy = 10325.8728 kcal/mol (10319.5069 without restraints) Performing minimization step: 1549. Total energy = 10321.7072 kcal/mol (10315.3435 without restraints) Performing minimization step: 1550. Total energy = 10317.5464 kcal/mol (10311.1849 without restraints) Performing minimization step: 1551. Total energy = 10313.3896 kcal/mol (10307.0303 without restraints) Performing minimization step: 1552. Total energy = 10309.2372 kcal/mol (10302.8799 without restraints) Performing minimization step: 1553. Total energy = 10305.0894 kcal/mol (10298.7345 without restraints) Performing minimization step: 1554. Total energy = 10300.9466 kcal/mol (10294.5939 without restraints) Performing minimization step: 1555. Total energy = 10296.8072 kcal/mol (10290.4566 without restraints) Performing minimization step: 1556. Total energy = 10292.6727 kcal/mol (10286.3243 without restraints) Performing minimization step: 1557. Total energy = 10288.5423 kcal/mol (10282.1961 without restraints) Performing minimization step: 1558. Total energy = 10284.4163 kcal/mol (10278.0723 without restraints) Performing minimization step: 1559. Total energy = 10280.2948 kcal/mol (10273.9530 without restraints) Performing minimization step: 1560. Total energy = 10276.1772 kcal/mol (10269.8376 without restraints) Performing minimization step: 1561. Total energy = 10272.0642 kcal/mol (10265.7268 without restraints) Performing minimization step: 1562. Total energy = 10267.9556 kcal/mol (10261.6203 without restraints) Performing minimization step: 1563. Total energy = 10263.8513 kcal/mol (10257.5182 without restraints) Performing minimization step: 1564. Total energy = 10259.7509 kcal/mol (10253.4200 without restraints) Performing minimization step: 1565. Total energy = 10255.6554 kcal/mol (10249.3265 without restraints) Performing minimization step: 1566. Total energy = 10251.5637 kcal/mol (10245.2371 without restraints) Performing minimization step: 1567. Total energy = 10247.4763 kcal/mol (10241.1519 without restraints) Performing minimization step: 1568. Total energy = 10243.3930 kcal/mol (10237.0709 without restraints) Performing minimization step: 1569. Total energy = 10239.3136 kcal/mol (10232.9936 without restraints) Performing minimization step: 1570. Total energy = 10235.2390 kcal/mol (10228.9213 without restraints) Performing minimization step: 1571. Total energy = 10231.1685 kcal/mol (10224.8529 without restraints) Performing minimization step: 1572. Total energy = 10227.1021 kcal/mol (10220.7886 without restraints) Performing minimization step: 1573. Total energy = 10223.0400 kcal/mol (10216.7287 without restraints) Performing minimization step: 1574. Total energy = 10218.9814 kcal/mol (10212.6723 without restraints) Performing minimization step: 1575. Total energy = 10214.9276 kcal/mol (10208.6208 without restraints) Performing minimization step: 1576. Total energy = 10210.8783 kcal/mol (10204.5736 without restraints) Performing minimization step: 1577. Total energy = 10206.8326 kcal/mol (10200.5299 without restraints) Performing minimization step: 1578. Total energy = 10202.7912 kcal/mol (10196.4907 without restraints) Performing minimization step: 1579. Total energy = 10198.7538 kcal/mol (10192.4556 without restraints) Performing minimization step: 1580. Total energy = 10194.7207 kcal/mol (10188.4245 without restraints) Performing minimization step: 1581. Total energy = 10190.6920 kcal/mol (10184.3982 without restraints) Performing minimization step: 1582. Total energy = 10186.6672 kcal/mol (10180.3755 without restraints) Performing minimization step: 1583. Total energy = 10182.6463 kcal/mol (10176.3566 without restraints) Performing minimization step: 1584. Total energy = 10178.6295 kcal/mol (10172.3421 without restraints) Performing minimization step: 1585. Total energy = 10174.6174 kcal/mol (10168.3322 without restraints) Performing minimization step: 1586. Total energy = 10170.6092 kcal/mol (10164.3261 without restraints) Performing minimization step: 1587. Total energy = 10166.6048 kcal/mol (10160.3240 without restraints) Performing minimization step: 1588. Total energy = 10162.6050 kcal/mol (10156.3264 without restraints) Performing minimization step: 1589. Total energy = 10158.6094 kcal/mol (10152.3329 without restraints) Performing minimization step: 1590. Total energy = 10154.6172 kcal/mol (10148.3428 without restraints) Performing minimization step: 1591. Total energy = 10150.6293 kcal/mol (10144.3571 without restraints) Performing minimization step: 1592. Total energy = 10146.6458 kcal/mol (10140.3757 without restraints) Performing minimization step: 1593. Total energy = 10142.6659 kcal/mol (10136.3980 without restraints) Performing minimization step: 1594. Total energy = 10138.6907 kcal/mol (10132.4250 without restraints) Performing minimization step: 1595. Total energy = 10134.7195 kcal/mol (10128.4559 without restraints) Performing minimization step: 1596. Total energy = 10130.7519 kcal/mol (10124.4905 without restraints) Performing minimization step: 1597. Total energy = 10126.7888 kcal/mol (10120.5296 without restraints) Performing minimization step: 1598. Total energy = 10122.8289 kcal/mol (10116.5719 without restraints) Performing minimization step: 1599. Total energy = 10118.8733 kcal/mol (10112.6184 without restraints) Performing minimization step: 1600. Total energy = 10114.9221 kcal/mol (10108.6693 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 10110.9746 kcal/mol (10104.7240 without restraints) Performing minimization step: 1602. Total energy = 10107.0312 kcal/mol (10100.7827 without restraints) Performing minimization step: 1603. Total energy = 10103.0917 kcal/mol (10096.8454 without restraints) Performing minimization step: 1604. Total energy = 10099.1565 kcal/mol (10092.9125 without restraints) Performing minimization step: 1605. Total energy = 10095.2253 kcal/mol (10088.9833 without restraints) Performing minimization step: 1606. Total energy = 10091.2977 kcal/mol (10085.0579 without restraints) Performing minimization step: 1607. Total energy = 10087.3744 kcal/mol (10081.1367 without restraints) Performing minimization step: 1608. Total energy = 10083.4547 kcal/mol (10077.2191 without restraints) Performing minimization step: 1609. Total energy = 10079.5392 kcal/mol (10073.3059 without restraints) Performing minimization step: 1610. Total energy = 10075.6279 kcal/mol (10069.3967 without restraints) Performing minimization step: 1611. Total energy = 10071.7204 kcal/mol (10065.4913 without restraints) Performing minimization step: 1612. Total energy = 10067.8166 kcal/mol (10061.5897 without restraints) Performing minimization step: 1613. Total energy = 10063.9167 kcal/mol (10057.6919 without restraints) Performing minimization step: 1614. Total energy = 10060.0214 kcal/mol (10053.7988 without restraints) Performing minimization step: 1615. Total energy = 10056.1294 kcal/mol (10049.9089 without restraints) Performing minimization step: 1616. Total energy = 10052.2411 kcal/mol (10046.0228 without restraints) Performing minimization step: 1617. Total energy = 10048.3568 kcal/mol (10042.1406 without restraints) Performing minimization step: 1618. Total energy = 10044.4765 kcal/mol (10038.2626 without restraints) Performing minimization step: 1619. Total energy = 10040.6006 kcal/mol (10034.3887 without restraints) Performing minimization step: 1620. Total energy = 10036.7278 kcal/mol (10030.5179 without restraints) Performing minimization step: 1621. Total energy = 10032.8584 kcal/mol (10026.6508 without restraints) Performing minimization step: 1622. Total energy = 10028.9934 kcal/mol (10022.7881 without restraints) Performing minimization step: 1623. Total energy = 10025.1323 kcal/mol (10018.9289 without restraints) Performing minimization step: 1624. Total energy = 10021.2751 kcal/mol (10015.0740 without restraints) Performing minimization step: 1625. Total energy = 10017.4218 kcal/mol (10011.2228 without restraints) Performing minimization step: 1626. Total energy = 10013.5724 kcal/mol (10007.3756 without restraints) Performing minimization step: 1627. Total energy = 10009.7270 kcal/mol (10003.5323 without restraints) Performing minimization step: 1628. Total energy = 10005.8853 kcal/mol (9999.6926 without restraints) Performing minimization step: 1629. Total energy = 10002.0472 kcal/mol (9995.8568 without restraints) Performing minimization step: 1630. Total energy = 9998.2128 kcal/mol (9992.0244 without restraints) Performing minimization step: 1631. Total energy = 9994.3824 kcal/mol (9988.1962 without restraints) Performing minimization step: 1632. Total energy = 9990.5557 kcal/mol (9984.3716 without restraints) Performing minimization step: 1633. Total energy = 9986.7328 kcal/mol (9980.5509 without restraints) Performing minimization step: 1634. Total energy = 9982.9141 kcal/mol (9976.7344 without restraints) Performing minimization step: 1635. Total energy = 9979.0984 kcal/mol (9972.9206 without restraints) Performing minimization step: 1636. Total energy = 9975.2869 kcal/mol (9969.1114 without restraints) Performing minimization step: 1637. Total energy = 9971.4791 kcal/mol (9965.3057 without restraints) Performing minimization step: 1638. Total energy = 9967.6749 kcal/mol (9961.5037 without restraints) Performing minimization step: 1639. Total energy = 9963.8745 kcal/mol (9957.7053 without restraints) Performing minimization step: 1640. Total energy = 9960.0777 kcal/mol (9953.9106 without restraints) Performing minimization step: 1641. Total energy = 9956.2851 kcal/mol (9950.1202 without restraints) Performing minimization step: 1642. Total energy = 9952.4961 kcal/mol (9946.3334 without restraints) Performing minimization step: 1643. Total energy = 9948.7108 kcal/mol (9942.5502 without restraints) Performing minimization step: 1644. Total energy = 9944.9293 kcal/mol (9938.7709 without restraints) Performing minimization step: 1645. Total energy = 9941.1514 kcal/mol (9934.9952 without restraints) Performing minimization step: 1646. Total energy = 9937.3773 kcal/mol (9931.2231 without restraints) Performing minimization step: 1647. Total energy = 9933.6067 kcal/mol (9927.4547 without restraints) Performing minimization step: 1648. Total energy = 9929.8400 kcal/mol (9923.6901 without restraints) Performing minimization step: 1649. Total energy = 9926.0768 kcal/mol (9919.9290 without restraints) Performing minimization step: 1650. Total energy = 9922.3173 kcal/mol (9916.1714 without restraints) Performing minimization step: 1651. Total energy = 9918.5614 kcal/mol (9912.4180 without restraints) Performing minimization step: 1652. Total energy = 9914.8094 kcal/mol (9908.6679 without restraints) Performing minimization step: 1653. Total energy = 9911.0606 kcal/mol (9904.9212 without restraints) Performing minimization step: 1654. Total energy = 9907.3157 kcal/mol (9901.1785 without restraints) Performing minimization step: 1655. Total energy = 9903.5741 kcal/mol (9897.4391 without restraints) Performing minimization step: 1656. Total energy = 9899.8364 kcal/mol (9893.7032 without restraints) Performing minimization step: 1657. Total energy = 9896.1024 kcal/mol (9889.9715 without restraints) Performing minimization step: 1658. Total energy = 9892.3721 kcal/mol (9886.2434 without restraints) Performing minimization step: 1659. Total energy = 9888.6452 kcal/mol (9882.5185 without restraints) Performing minimization step: 1660. Total energy = 9884.9223 kcal/mol (9878.7976 without restraints) Performing minimization step: 1661. Total energy = 9881.2026 kcal/mol (9875.0801 without restraints) Performing minimization step: 1662. Total energy = 9877.4867 kcal/mol (9871.3666 without restraints) Performing minimization step: 1663. Total energy = 9873.7747 kcal/mol (9867.6566 without restraints) Performing minimization step: 1664. Total energy = 9870.0658 kcal/mol (9863.9498 without restraints) Performing minimization step: 1665. Total energy = 9866.3604 kcal/mol (9860.2464 without restraints) Performing minimization step: 1666. Total energy = 9862.6589 kcal/mol (9856.5473 without restraints) Performing minimization step: 1667. Total energy = 9858.9610 kcal/mol (9852.8513 without restraints) Performing minimization step: 1668. Total energy = 9855.2664 kcal/mol (9849.1589 without restraints) Performing minimization step: 1669. Total energy = 9851.5755 kcal/mol (9845.4700 without restraints) Performing minimization step: 1670. Total energy = 9847.8879 kcal/mol (9841.7845 without restraints) Performing minimization step: 1671. Total energy = 9844.2041 kcal/mol (9838.1029 without restraints) Performing minimization step: 1672. Total energy = 9840.5242 kcal/mol (9834.4252 without restraints) Performing minimization step: 1673. Total energy = 9836.8474 kcal/mol (9830.7503 without restraints) Performing minimization step: 1674. Total energy = 9833.1742 kcal/mol (9827.0792 without restraints) Performing minimization step: 1675. Total energy = 9829.5041 kcal/mol (9823.4112 without restraints) Performing minimization step: 1676. Total energy = 9825.8376 kcal/mol (9819.7468 without restraints) Performing minimization step: 1677. Total energy = 9822.1745 kcal/mol (9816.0858 without restraints) Performing minimization step: 1678. Total energy = 9818.5155 kcal/mol (9812.4289 without restraints) Performing minimization step: 1679. Total energy = 9814.8595 kcal/mol (9808.7751 without restraints) Performing minimization step: 1680. Total energy = 9811.2070 kcal/mol (9805.1247 without restraints) Performing minimization step: 1681. Total energy = 9807.5580 kcal/mol (9801.4777 without restraints) Performing minimization step: 1682. Total energy = 9803.9124 kcal/mol (9797.8342 without restraints) Performing minimization step: 1683. Total energy = 9800.2703 kcal/mol (9794.1942 without restraints) Performing minimization step: 1684. Total energy = 9796.6313 kcal/mol (9790.5574 without restraints) Performing minimization step: 1685. Total energy = 9792.9962 kcal/mol (9786.9244 without restraints) Performing minimization step: 1686. Total energy = 9789.3646 kcal/mol (9783.2948 without restraints) Performing minimization step: 1687. Total energy = 9785.7359 kcal/mol (9779.6682 without restraints) Performing minimization step: 1688. Total energy = 9782.1108 kcal/mol (9776.0451 without restraints) Performing minimization step: 1689. Total energy = 9778.4891 kcal/mol (9772.4256 without restraints) Performing minimization step: 1690. Total energy = 9774.8709 kcal/mol (9768.8095 without restraints) Performing minimization step: 1691. Total energy = 9771.2561 kcal/mol (9765.1969 without restraints) Performing minimization step: 1692. Total energy = 9767.6448 kcal/mol (9761.5876 without restraints) Performing minimization step: 1693. Total energy = 9764.0367 kcal/mol (9757.9816 without restraints) Performing minimization step: 1694. Total energy = 9760.4322 kcal/mol (9754.3793 without restraints) Performing minimization step: 1695. Total energy = 9756.8312 kcal/mol (9750.7802 without restraints) Performing minimization step: 1696. Total energy = 9753.2333 kcal/mol (9747.1844 without restraints) Performing minimization step: 1697. Total energy = 9749.6387 kcal/mol (9743.5919 without restraints) Performing minimization step: 1698. Total energy = 9746.0474 kcal/mol (9740.0027 without restraints) Performing minimization step: 1699. Total energy = 9742.4593 kcal/mol (9736.4167 without restraints) Performing minimization step: 1700. Total energy = 9738.8755 kcal/mol (9732.8351 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 9735.2945 kcal/mol (9729.2559 without restraints) Performing minimization step: 1702. Total energy = 9731.7165 kcal/mol (9725.6801 without restraints) Performing minimization step: 1703. Total energy = 9728.1421 kcal/mol (9722.1078 without restraints) Performing minimization step: 1704. Total energy = 9724.5711 kcal/mol (9718.5390 without restraints) Performing minimization step: 1705. Total energy = 9721.0030 kcal/mol (9714.9729 without restraints) Performing minimization step: 1706. Total energy = 9717.4383 kcal/mol (9711.4103 without restraints) Performing minimization step: 1707. Total energy = 9713.8769 kcal/mol (9707.8509 without restraints) Performing minimization step: 1708. Total energy = 9710.3194 kcal/mol (9704.2955 without restraints) Performing minimization step: 1709. Total energy = 9706.7646 kcal/mol (9700.7429 without restraints) Performing minimization step: 1710. Total energy = 9703.2135 kcal/mol (9697.1938 without restraints) Performing minimization step: 1711. Total energy = 9699.6652 kcal/mol (9693.6475 without restraints) Performing minimization step: 1712. Total energy = 9696.1203 kcal/mol (9690.1047 without restraints) Performing minimization step: 1713. Total energy = 9692.5785 kcal/mol (9686.5650 without restraints) Performing minimization step: 1714. Total energy = 9689.0398 kcal/mol (9683.0282 without restraints) Performing minimization step: 1715. Total energy = 9685.5043 kcal/mol (9679.4948 without restraints) Performing minimization step: 1716. Total energy = 9681.9722 kcal/mol (9675.9650 without restraints) Performing minimization step: 1717. Total energy = 9678.4433 kcal/mol (9672.4380 without restraints) Performing minimization step: 1718. Total energy = 9674.9178 kcal/mol (9668.9146 without restraints) Performing minimization step: 1719. Total energy = 9671.3953 kcal/mol (9665.3942 without restraints) Performing minimization step: 1720. Total energy = 9667.8760 kcal/mol (9661.8770 without restraints) Performing minimization step: 1721. Total energy = 9664.3599 kcal/mol (9658.3629 without restraints) Performing minimization step: 1722. Total energy = 9660.8470 kcal/mol (9654.8520 without restraints) Performing minimization step: 1723. Total energy = 9657.3371 kcal/mol (9651.3443 without restraints) Performing minimization step: 1724. Total energy = 9653.8307 kcal/mol (9647.8399 without restraints) Performing minimization step: 1725. Total energy = 9650.3273 kcal/mol (9644.3386 without restraints) Performing minimization step: 1726. Total energy = 9646.8273 kcal/mol (9640.8406 without restraints) Performing minimization step: 1727. Total energy = 9643.3300 kcal/mol (9637.3454 without restraints) Performing minimization step: 1728. Total energy = 9639.8362 kcal/mol (9633.8536 without restraints) Performing minimization step: 1729. Total energy = 9636.3450 kcal/mol (9630.3646 without restraints) Performing minimization step: 1730. Total energy = 9632.8572 kcal/mol (9626.8787 without restraints) Performing minimization step: 1731. Total energy = 9629.3726 kcal/mol (9623.3963 without restraints) Performing minimization step: 1732. Total energy = 9625.8909 kcal/mol (9619.9166 without restraints) Performing minimization step: 1733. Total energy = 9622.4129 kcal/mol (9616.4406 without restraints) Performing minimization step: 1734. Total energy = 9618.9374 kcal/mol (9612.9672 without restraints) Performing minimization step: 1735. Total energy = 9615.4654 kcal/mol (9609.4972 without restraints) Performing minimization step: 1736. Total energy = 9611.9961 kcal/mol (9606.0301 without restraints) Performing minimization step: 1737. Total energy = 9608.5301 kcal/mol (9602.5662 without restraints) Performing minimization step: 1738. Total energy = 9605.0672 kcal/mol (9599.1053 without restraints) Performing minimization step: 1739. Total energy = 9601.6073 kcal/mol (9595.6474 without restraints) Performing minimization step: 1740. Total energy = 9598.1507 kcal/mol (9592.1928 without restraints) Performing minimization step: 1741. Total energy = 9594.6969 kcal/mol (9588.7411 without restraints) Performing minimization step: 1742. Total energy = 9591.2462 kcal/mol (9585.2924 without restraints) Performing minimization step: 1743. Total energy = 9587.7987 kcal/mol (9581.8472 without restraints) Performing minimization step: 1744. Total energy = 9584.3543 kcal/mol (9578.4046 without restraints) Performing minimization step: 1745. Total energy = 9580.9126 kcal/mol (9574.9650 without restraints) Performing minimization step: 1746. Total energy = 9577.4742 kcal/mol (9571.5286 without restraints) Performing minimization step: 1747. Total energy = 9574.0387 kcal/mol (9568.0951 without restraints) Performing minimization step: 1748. Total energy = 9570.6059 kcal/mol (9564.6644 without restraints) Performing minimization step: 1749. Total energy = 9567.1760 kcal/mol (9561.2365 without restraints) Performing minimization step: 1750. Total energy = 9563.7494 kcal/mol (9557.8121 without restraints) Performing minimization step: 1751. Total energy = 9560.3256 kcal/mol (9554.3902 without restraints) Performing minimization step: 1752. Total energy = 9556.9049 kcal/mol (9550.9716 without restraints) Performing minimization step: 1753. Total energy = 9553.4872 kcal/mol (9547.5559 without restraints) Performing minimization step: 1754. Total energy = 9550.0725 kcal/mol (9544.1432 without restraints) Performing minimization step: 1755. Total energy = 9546.6609 kcal/mol (9540.7336 without restraints) Performing minimization step: 1756. Total energy = 9543.2526 kcal/mol (9537.3278 without restraints) Performing minimization step: 1757. Total energy = 9539.8474 kcal/mol (9533.9241 without restraints) Performing minimization step: 1758. Total energy = 9536.4443 kcal/mol (9530.5231 without restraints) Performing minimization step: 1759. Total energy = 9533.0443 kcal/mol (9527.1254 without restraints) Performing minimization step: 1760. Total energy = 9529.6475 kcal/mol (9523.7305 without restraints) Performing minimization step: 1761. Total energy = 9526.2534 kcal/mol (9520.3384 without restraints) Performing minimization step: 1762. Total energy = 9522.8627 kcal/mol (9516.9496 without restraints) Performing minimization step: 1763. Total energy = 9519.4742 kcal/mol (9513.5631 without restraints) Performing minimization step: 1764. Total energy = 9516.0888 kcal/mol (9510.1799 without restraints) Performing minimization step: 1765. Total energy = 9512.7063 kcal/mol (9506.7993 without restraints) Performing minimization step: 1766. Total energy = 9509.3266 kcal/mol (9503.4216 without restraints) Performing minimization step: 1767. Total energy = 9505.9497 kcal/mol (9500.0469 without restraints) Performing minimization step: 1768. Total energy = 9502.5759 kcal/mol (9496.6751 without restraints) Performing minimization step: 1769. Total energy = 9499.2049 kcal/mol (9493.3060 without restraints) Performing minimization step: 1770. Total energy = 9495.8371 kcal/mol (9489.9402 without restraints) Performing minimization step: 1771. Total energy = 9492.4717 kcal/mol (9486.5769 without restraints) Performing minimization step: 1772. Total energy = 9489.1091 kcal/mol (9483.2163 without restraints) Performing minimization step: 1773. Total energy = 9485.7497 kcal/mol (9479.8591 without restraints) Performing minimization step: 1774. Total energy = 9482.3926 kcal/mol (9476.5036 without restraints) Performing minimization step: 1775. Total energy = 9479.0385 kcal/mol (9473.1519 without restraints) Performing minimization step: 1776. Total energy = 9475.6873 kcal/mol (9469.8025 without restraints) Performing minimization step: 1777. Total energy = 9472.3390 kcal/mol (9466.4562 without restraints) Performing minimization step: 1778. Total energy = 9468.9934 kcal/mol (9463.1128 without restraints) Performing minimization step: 1779. Total energy = 9465.6506 kcal/mol (9459.7719 without restraints) Performing minimization step: 1780. Total energy = 9462.3105 kcal/mol (9456.4338 without restraints) Performing minimization step: 1781. Total energy = 9458.9730 kcal/mol (9453.0984 without restraints) Performing minimization step: 1782. Total energy = 9455.6387 kcal/mol (9449.7661 without restraints) Performing minimization step: 1783. Total energy = 9452.3072 kcal/mol (9446.4366 without restraints) Performing minimization step: 1784. Total energy = 9448.9779 kcal/mol (9443.1094 without restraints) Performing minimization step: 1785. Total energy = 9445.6519 kcal/mol (9439.7852 without restraints) Performing minimization step: 1786. Total energy = 9442.3280 kcal/mol (9436.4634 without restraints) Performing minimization step: 1787. Total energy = 9439.0075 kcal/mol (9433.1449 without restraints) Performing minimization step: 1788. Total energy = 9435.6895 kcal/mol (9429.8289 without restraints) Performing minimization step: 1789. Total energy = 9432.3743 kcal/mol (9426.5156 without restraints) Performing minimization step: 1790. Total energy = 9429.0621 kcal/mol (9423.2056 without restraints) Performing minimization step: 1791. Total energy = 9425.7522 kcal/mol (9419.8976 without restraints) Performing minimization step: 1792. Total energy = 9422.4451 kcal/mol (9416.5925 without restraints) Performing minimization step: 1793. Total energy = 9419.1407 kcal/mol (9413.2901 without restraints) Performing minimization step: 1794. Total energy = 9415.8387 kcal/mol (9409.9901 without restraints) Performing minimization step: 1795. Total energy = 9412.5397 kcal/mol (9406.6930 without restraints) Performing minimization step: 1796. Total energy = 9409.2434 kcal/mol (9403.3987 without restraints) Performing minimization step: 1797. Total energy = 9405.9496 kcal/mol (9400.1068 without restraints) Performing minimization step: 1798. Total energy = 9402.6584 kcal/mol (9396.8178 without restraints) Performing minimization step: 1799. Total energy = 9399.3703 kcal/mol (9393.5316 without restraints) Performing minimization step: 1800. Total energy = 9396.0846 kcal/mol (9390.2481 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 9392.8015 kcal/mol (9386.9668 without restraints) Performing minimization step: 1802. Total energy = 9389.5213 kcal/mol (9383.6886 without restraints) Performing minimization step: 1803. Total energy = 9386.2445 kcal/mol (9380.4137 without restraints) Performing minimization step: 1804. Total energy = 9382.9693 kcal/mol (9377.1406 without restraints) Performing minimization step: 1805. Total energy = 9379.6968 kcal/mol (9373.8701 without restraints) Performing minimization step: 1806. Total energy = 9376.4271 kcal/mol (9370.6023 without restraints) Performing minimization step: 1807. Total energy = 9373.1599 kcal/mol (9367.3371 without restraints) Performing minimization step: 1808. Total energy = 9369.8952 kcal/mol (9364.0744 without restraints) Performing minimization step: 1809. Total energy = 9366.6331 kcal/mol (9360.8143 without restraints) Performing minimization step: 1810. Total energy = 9363.3738 kcal/mol (9357.5569 without restraints) Performing minimization step: 1811. Total energy = 9360.1166 kcal/mol (9354.3016 without restraints) Performing minimization step: 1812. Total energy = 9356.8621 kcal/mol (9351.0492 without restraints) Performing minimization step: 1813. Total energy = 9353.6100 kcal/mol (9347.7991 without restraints) Performing minimization step: 1814. Total energy = 9350.3604 kcal/mol (9344.5513 without restraints) Performing minimization step: 1815. Total energy = 9347.1140 kcal/mol (9341.3071 without restraints) Performing minimization step: 1816. Total energy = 9343.8700 kcal/mol (9338.0651 without restraints) Performing minimization step: 1817. Total energy = 9340.6287 kcal/mol (9334.8256 without restraints) Performing minimization step: 1818. Total energy = 9337.3896 kcal/mol (9331.5886 without restraints) Performing minimization step: 1819. Total energy = 9334.1533 kcal/mol (9328.3542 without restraints) Performing minimization step: 1820. Total energy = 9330.9198 kcal/mol (9325.1226 without restraints) Performing minimization step: 1821. Total energy = 9327.6886 kcal/mol (9321.8935 without restraints) Performing minimization step: 1822. Total energy = 9324.4600 kcal/mol (9318.6668 without restraints) Performing minimization step: 1823. Total energy = 9321.2335 kcal/mol (9315.4423 without restraints) Performing minimization step: 1824. Total energy = 9318.0093 kcal/mol (9312.2201 without restraints) Performing minimization step: 1825. Total energy = 9314.7877 kcal/mol (9309.0005 without restraints) Performing minimization step: 1826. Total energy = 9311.5686 kcal/mol (9305.7832 without restraints) Performing minimization step: 1827. Total energy = 9308.3520 kcal/mol (9302.5686 without restraints) Performing minimization step: 1828. Total energy = 9305.1380 kcal/mol (9299.3565 without restraints) Performing minimization step: 1829. Total energy = 9301.9266 kcal/mol (9296.1471 without restraints) Performing minimization step: 1830. Total energy = 9298.7174 kcal/mol (9292.9399 without restraints) Performing minimization step: 1831. Total energy = 9295.5105 kcal/mol (9289.7349 without restraints) Performing minimization step: 1832. Total energy = 9292.3064 kcal/mol (9286.5328 without restraints) Performing minimization step: 1833. Total energy = 9289.1047 kcal/mol (9283.3331 without restraints) Performing minimization step: 1834. Total energy = 9285.9053 kcal/mol (9280.1354 without restraints) Performing minimization step: 1835. Total energy = 9282.7090 kcal/mol (9276.9412 without restraints) Performing minimization step: 1836. Total energy = 9279.5146 kcal/mol (9273.7487 without restraints) Performing minimization step: 1837. Total energy = 9276.3222 kcal/mol (9270.5584 without restraints) Performing minimization step: 1838. Total energy = 9273.1327 kcal/mol (9267.3708 without restraints) Performing minimization step: 1839. Total energy = 9269.9453 kcal/mol (9264.1854 without restraints) Performing minimization step: 1840. Total energy = 9266.7605 kcal/mol (9261.0025 without restraints) Performing minimization step: 1841. Total energy = 9263.5779 kcal/mol (9257.8217 without restraints) Performing minimization step: 1842. Total energy = 9260.3976 kcal/mol (9254.6435 without restraints) Performing minimization step: 1843. Total energy = 9257.2196 kcal/mol (9251.4672 without restraints) Performing minimization step: 1844. Total energy = 9254.0439 kcal/mol (9248.2937 without restraints) Performing minimization step: 1845. Total energy = 9250.8708 kcal/mol (9245.1225 without restraints) Performing minimization step: 1846. Total energy = 9247.7001 kcal/mol (9241.9537 without restraints) Performing minimization step: 1847. Total energy = 9244.5319 kcal/mol (9238.7875 without restraints) Performing minimization step: 1848. Total energy = 9241.3658 kcal/mol (9235.6232 without restraints) Performing minimization step: 1849. Total energy = 9238.2021 kcal/mol (9232.4615 without restraints) Performing minimization step: 1850. Total energy = 9235.0411 kcal/mol (9229.3024 without restraints) Performing minimization step: 1851. Total energy = 9231.8819 kcal/mol (9226.1453 without restraints) Performing minimization step: 1852. Total energy = 9228.7247 kcal/mol (9222.9900 without restraints) Performing minimization step: 1853. Total energy = 9225.5701 kcal/mol (9219.8372 without restraints) Performing minimization step: 1854. Total energy = 9222.4178 kcal/mol (9216.6869 without restraints) Performing minimization step: 1855. Total energy = 9219.2678 kcal/mol (9213.5387 without restraints) Performing minimization step: 1856. Total energy = 9216.1203 kcal/mol (9210.3932 without restraints) Performing minimization step: 1857. Total energy = 9212.9753 kcal/mol (9207.2502 without restraints) Performing minimization step: 1858. Total energy = 9209.8323 kcal/mol (9204.1091 without restraints) Performing minimization step: 1859. Total energy = 9206.6914 kcal/mol (9200.9701 without restraints) Performing minimization step: 1860. Total energy = 9203.5529 kcal/mol (9197.8335 without restraints) Performing minimization step: 1861. Total energy = 9200.4168 kcal/mol (9194.6994 without restraints) Performing minimization step: 1862. Total energy = 9197.2830 kcal/mol (9191.5675 without restraints) Performing minimization step: 1863. Total energy = 9194.1509 kcal/mol (9188.4372 without restraints) Performing minimization step: 1864. Total energy = 9191.0216 kcal/mol (9185.3100 without restraints) Performing minimization step: 1865. Total energy = 9187.8944 kcal/mol (9182.1846 without restraints) Performing minimization step: 1866. Total energy = 9184.7694 kcal/mol (9179.0615 without restraints) Performing minimization step: 1867. Total energy = 9181.6468 kcal/mol (9175.9409 without restraints) Performing minimization step: 1868. Total energy = 9178.5261 kcal/mol (9172.8220 without restraints) Performing minimization step: 1869. Total energy = 9175.4081 kcal/mol (9169.7060 without restraints) Performing minimization step: 1870. Total energy = 9172.2919 kcal/mol (9166.5919 without restraints) Performing minimization step: 1871. Total energy = 9169.1778 kcal/mol (9163.4795 without restraints) Performing minimization step: 1872. Total energy = 9166.0658 kcal/mol (9160.3694 without restraints) Performing minimization step: 1873. Total energy = 9162.9559 kcal/mol (9157.2616 without restraints) Performing minimization step: 1874. Total energy = 9159.8487 kcal/mol (9154.1562 without restraints) Performing minimization step: 1875. Total energy = 9156.7434 kcal/mol (9151.0527 without restraints) Performing minimization step: 1876. Total energy = 9153.6400 kcal/mol (9147.9515 without restraints) Performing minimization step: 1877. Total energy = 9150.5392 kcal/mol (9144.8523 without restraints) Performing minimization step: 1878. Total energy = 9147.4407 kcal/mol (9141.7558 without restraints) Performing minimization step: 1879. Total energy = 9144.3447 kcal/mol (9138.6617 without restraints) Performing minimization step: 1880. Total energy = 9141.2503 kcal/mol (9135.5691 without restraints) Performing minimization step: 1881. Total energy = 9138.1581 kcal/mol (9132.4788 without restraints) Performing minimization step: 1882. Total energy = 9135.0679 kcal/mol (9129.3906 without restraints) Performing minimization step: 1883. Total energy = 9131.9799 kcal/mol (9126.3044 without restraints) Performing minimization step: 1884. Total energy = 9128.8938 kcal/mol (9123.2203 without restraints) Performing minimization step: 1885. Total energy = 9125.8099 kcal/mol (9120.1382 without restraints) Performing minimization step: 1886. Total energy = 9122.7280 kcal/mol (9117.0583 without restraints) Performing minimization step: 1887. Total energy = 9119.6481 kcal/mol (9113.9803 without restraints) Performing minimization step: 1888. Total energy = 9116.5708 kcal/mol (9110.9049 without restraints) Performing minimization step: 1889. Total energy = 9113.4953 kcal/mol (9107.8312 without restraints) Performing minimization step: 1890. Total energy = 9110.4220 kcal/mol (9104.7598 without restraints) Performing minimization step: 1891. Total energy = 9107.3506 kcal/mol (9101.6903 without restraints) Performing minimization step: 1892. Total energy = 9104.2813 kcal/mol (9098.6228 without restraints) Performing minimization step: 1893. Total energy = 9101.2139 kcal/mol (9095.5575 without restraints) Performing minimization step: 1894. Total energy = 9098.1484 kcal/mol (9092.4937 without restraints) Performing minimization step: 1895. Total energy = 9095.0854 kcal/mol (9089.4326 without restraints) Performing minimization step: 1896. Total energy = 9092.0244 kcal/mol (9086.3735 without restraints) Performing minimization step: 1897. Total energy = 9088.9653 kcal/mol (9083.3163 without restraints) Performing minimization step: 1898. Total energy = 9085.9082 kcal/mol (9080.2611 without restraints) Performing minimization step: 1899. Total energy = 9082.8531 kcal/mol (9077.2078 without restraints) Performing minimization step: 1900. Total energy = 9079.8002 kcal/mol (9074.1568 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 9076.7494 kcal/mol (9071.1078 without restraints) Performing minimization step: 1902. Total energy = 9073.7005 kcal/mol (9068.0608 without restraints) Performing minimization step: 1903. Total energy = 9070.6535 kcal/mol (9065.0157 without restraints) Performing minimization step: 1904. Total energy = 9067.6089 kcal/mol (9061.9730 without restraints) Performing minimization step: 1905. Total energy = 9064.5655 kcal/mol (9058.9314 without restraints) Performing minimization step: 1906. Total energy = 9061.5245 kcal/mol (9055.8926 without restraints) Performing minimization step: 1907. Total energy = 9058.4861 kcal/mol (9052.8558 without restraints) Performing minimization step: 1908. Total energy = 9055.4490 kcal/mol (9049.8206 without restraints) Performing minimization step: 1909. Total energy = 9052.4140 kcal/mol (9046.7875 without restraints) Performing minimization step: 1910. Total energy = 9049.3809 kcal/mol (9043.7561 without restraints) Performing minimization step: 1911. Total energy = 9046.3496 kcal/mol (9040.7266 without restraints) Performing minimization step: 1912. Total energy = 9043.3198 kcal/mol (9037.6988 without restraints) Performing minimization step: 1913. Total energy = 9040.2925 kcal/mol (9034.6733 without restraints) Performing minimization step: 1914. Total energy = 9037.2670 kcal/mol (9031.6497 without restraints) Performing minimization step: 1915. Total energy = 9034.2436 kcal/mol (9028.6282 without restraints) Performing minimization step: 1916. Total energy = 9031.2215 kcal/mol (9025.6079 without restraints) Performing minimization step: 1917. Total energy = 9028.2020 kcal/mol (9022.5903 without restraints) Performing minimization step: 1918. Total energy = 9025.1843 kcal/mol (9019.5744 without restraints) Performing minimization step: 1919. Total energy = 9022.1688 kcal/mol (9016.5607 without restraints) Performing minimization step: 1920. Total energy = 9019.1548 kcal/mol (9013.5485 without restraints) Performing minimization step: 1921. Total energy = 9016.1426 kcal/mol (9010.5382 without restraints) Performing minimization step: 1922. Total energy = 9013.1326 kcal/mol (9007.5301 without restraints) Performing minimization step: 1923. Total energy = 9010.1245 kcal/mol (9004.5238 without restraints) Performing minimization step: 1924. Total energy = 9007.1184 kcal/mol (9001.5198 without restraints) Performing minimization step: 1925. Total energy = 9004.1143 kcal/mol (8998.5174 without restraints) Performing minimization step: 1926. Total energy = 9001.1120 kcal/mol (8995.5169 without restraints) Performing minimization step: 1927. Total energy = 8998.1114 kcal/mol (8992.5181 without restraints) Performing minimization step: 1928. Total energy = 8995.1125 kcal/mol (8989.5211 without restraints) Performing minimization step: 1929. Total energy = 8992.1156 kcal/mol (8986.5259 without restraints) Performing minimization step: 1930. Total energy = 8989.1201 kcal/mol (8983.5323 without restraints) Performing minimization step: 1931. Total energy = 8986.1271 kcal/mol (8980.5412 without restraints) Performing minimization step: 1932. Total energy = 8983.1357 kcal/mol (8977.5516 without restraints) Performing minimization step: 1933. Total energy = 8980.1461 kcal/mol (8974.5639 without restraints) Performing minimization step: 1934. Total energy = 8977.1579 kcal/mol (8971.5774 without restraints) Performing minimization step: 1935. Total energy = 8974.1719 kcal/mol (8968.5933 without restraints) Performing minimization step: 1936. Total energy = 8971.1878 kcal/mol (8965.6110 without restraints) Performing minimization step: 1937. Total energy = 8968.2057 kcal/mol (8962.6307 without restraints) Performing minimization step: 1938. Total energy = 8965.2251 kcal/mol (8959.6520 without restraints) Performing minimization step: 1939. Total energy = 8962.2464 kcal/mol (8956.6751 without restraints) Performing minimization step: 1940. Total energy = 8959.2698 kcal/mol (8953.7003 without restraints) Performing minimization step: 1941. Total energy = 8956.2949 kcal/mol (8950.7273 without restraints) Performing minimization step: 1942. Total energy = 8953.3217 kcal/mol (8947.7559 without restraints) Performing minimization step: 1943. Total energy = 8950.3504 kcal/mol (8944.7863 without restraints) Performing minimization step: 1944. Total energy = 8947.3808 kcal/mol (8941.8186 without restraints) Performing minimization step: 1945. Total energy = 8944.4125 kcal/mol (8938.8522 without restraints) Performing minimization step: 1946. Total energy = 8941.4461 kcal/mol (8935.8876 without restraints) Performing minimization step: 1947. Total energy = 8938.4813 kcal/mol (8932.9246 without restraints) Performing minimization step: 1948. Total energy = 8935.5192 kcal/mol (8929.9644 without restraints) Performing minimization step: 1949. Total energy = 8932.5582 kcal/mol (8927.0051 without restraints) Performing minimization step: 1950. Total energy = 8929.5988 kcal/mol (8924.0476 without restraints) Performing minimization step: 1951. Total energy = 8926.6414 kcal/mol (8921.0920 without restraints) Performing minimization step: 1952. Total energy = 8923.6858 kcal/mol (8918.1382 without restraints) Performing minimization step: 1953. Total energy = 8920.7318 kcal/mol (8915.1859 without restraints) Performing minimization step: 1954. Total energy = 8917.7795 kcal/mol (8912.2356 without restraints) Performing minimization step: 1955. Total energy = 8914.8292 kcal/mol (8909.2870 without restraints) Performing minimization step: 1956. Total energy = 8911.8803 kcal/mol (8906.3399 without restraints) Performing minimization step: 1957. Total energy = 8908.9331 kcal/mol (8903.3945 without restraints) Performing minimization step: 1958. Total energy = 8905.9874 kcal/mol (8900.4505 without restraints) Performing minimization step: 1959. Total energy = 8903.0433 kcal/mol (8897.5083 without restraints) Performing minimization step: 1960. Total energy = 8900.1013 kcal/mol (8894.5681 without restraints) Performing minimization step: 1961. Total energy = 8897.1610 kcal/mol (8891.6296 without restraints) Performing minimization step: 1962. Total energy = 8894.2223 kcal/mol (8888.6927 without restraints) Performing minimization step: 1963. Total energy = 8891.2854 kcal/mol (8885.7577 without restraints) Performing minimization step: 1964. Total energy = 8888.3503 kcal/mol (8882.8244 without restraints) Performing minimization step: 1965. Total energy = 8885.4166 kcal/mol (8879.8922 without restraints) Performing minimization step: 1966. Total energy = 8882.4846 kcal/mol (8876.9622 without restraints) Performing minimization step: 1967. Total energy = 8879.5546 kcal/mol (8874.0339 without restraints) Performing minimization step: 1968. Total energy = 8876.6258 kcal/mol (8871.1069 without restraints) Performing minimization step: 1969. Total energy = 8873.6984 kcal/mol (8868.1814 without restraints) Performing minimization step: 1970. Total energy = 8870.7727 kcal/mol (8865.2574 without restraints) Performing minimization step: 1971. Total energy = 8867.8491 kcal/mol (8862.3356 without restraints) Performing minimization step: 1972. Total energy = 8864.9269 kcal/mol (8859.4152 without restraints) Performing minimization step: 1973. Total energy = 8862.0063 kcal/mol (8856.4964 without restraints) Performing minimization step: 1974. Total energy = 8859.0876 kcal/mol (8853.5794 without restraints) Performing minimization step: 1975. Total energy = 8856.1702 kcal/mol (8850.6639 without restraints) Performing minimization step: 1976. Total energy = 8853.2545 kcal/mol (8847.7499 without restraints) Performing minimization step: 1977. Total energy = 8850.3403 kcal/mol (8844.8376 without restraints) Performing minimization step: 1978. Total energy = 8847.4282 kcal/mol (8841.9272 without restraints) Performing minimization step: 1979. Total energy = 8844.5177 kcal/mol (8839.0185 without restraints) Performing minimization step: 1980. Total energy = 8841.6084 kcal/mol (8836.1109 without restraints) Performing minimization step: 1981. Total energy = 8838.7006 kcal/mol (8833.2049 without restraints) Performing minimization step: 1982. Total energy = 8835.7944 kcal/mol (8830.3005 without restraints) Performing minimization step: 1983. Total energy = 8832.8898 kcal/mol (8827.3977 without restraints) Performing minimization step: 1984. Total energy = 8829.9872 kcal/mol (8824.4969 without restraints) Performing minimization step: 1985. Total energy = 8827.0859 kcal/mol (8821.5972 without restraints) Performing minimization step: 1986. Total energy = 8824.1860 kcal/mol (8818.6992 without restraints) Performing minimization step: 1987. Total energy = 8821.2877 kcal/mol (8815.8026 without restraints) Performing minimization step: 1988. Total energy = 8818.3910 kcal/mol (8812.9079 without restraints) Performing minimization step: 1989. Total energy = 8815.4958 kcal/mol (8810.0142 without restraints) Performing minimization step: 1990. Total energy = 8812.6022 kcal/mol (8807.1224 without restraints) Performing minimization step: 1991. Total energy = 8809.7099 kcal/mol (8804.2319 without restraints) Performing minimization step: 1992. Total energy = 8806.8195 kcal/mol (8801.3434 without restraints) Performing minimization step: 1993. Total energy = 8803.9310 kcal/mol (8798.4566 without restraints) Performing minimization step: 1994. Total energy = 8801.0438 kcal/mol (8795.5709 without restraints) Performing minimization step: 1995. Total energy = 8798.1577 kcal/mol (8792.6867 without restraints) Performing minimization step: 1996. Total energy = 8795.2732 kcal/mol (8789.8039 without restraints) Performing minimization step: 1997. Total energy = 8792.3903 kcal/mol (8786.9229 without restraints) Performing minimization step: 1998. Total energy = 8789.5090 kcal/mol (8784.0433 without restraints) Performing minimization step: 1999. Total energy = 8786.6295 kcal/mol (8781.1655 without restraints) Performing minimization step: 2000. Total energy = 8783.7511 kcal/mol (8778.2888 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 8780.8742 kcal/mol (8775.4137 without restraints) Performing minimization step: 2002. Total energy = 8777.9985 kcal/mol (8772.5398 without restraints) Performing minimization step: 2003. Total energy = 8775.1251 kcal/mol (8769.6680 without restraints) Performing minimization step: 2004. Total energy = 8772.2525 kcal/mol (8766.7972 without restraints) Performing minimization step: 2005. Total energy = 8769.3810 kcal/mol (8763.9275 without restraints) Performing minimization step: 2006. Total energy = 8766.5116 kcal/mol (8761.0597 without restraints) Performing minimization step: 2007. Total energy = 8763.6433 kcal/mol (8758.1933 without restraints) Performing minimization step: 2008. Total energy = 8760.7770 kcal/mol (8755.3287 without restraints) Performing minimization step: 2009. Total energy = 8757.9120 kcal/mol (8752.4655 without restraints) Performing minimization step: 2010. Total energy = 8755.0485 kcal/mol (8749.6036 without restraints) Performing minimization step: 2011. Total energy = 8752.1863 kcal/mol (8746.7432 without restraints) Performing minimization step: 2012. Total energy = 8749.3256 kcal/mol (8743.8843 without restraints) Performing minimization step: 2013. Total energy = 8746.4663 kcal/mol (8741.0266 without restraints) Performing minimization step: 2014. Total energy = 8743.6089 kcal/mol (8738.1712 without restraints) Performing minimization step: 2015. Total energy = 8740.7528 kcal/mol (8735.3167 without restraints) Performing minimization step: 2016. Total energy = 8737.8978 kcal/mol (8732.4633 without restraints) Performing minimization step: 2017. Total energy = 8735.0445 kcal/mol (8729.6118 without restraints) Performing minimization step: 2018. Total energy = 8732.1930 kcal/mol (8726.7620 without restraints) Performing minimization step: 2019. Total energy = 8729.3419 kcal/mol (8723.9127 without restraints) Performing minimization step: 2020. Total energy = 8726.4928 kcal/mol (8721.0654 without restraints) Performing minimization step: 2021. Total energy = 8723.6451 kcal/mol (8718.2193 without restraints) Performing minimization step: 2022. Total energy = 8720.7994 kcal/mol (8715.3753 without restraints) Performing minimization step: 2023. Total energy = 8717.9544 kcal/mol (8712.5320 without restraints) Performing minimization step: 2024. Total energy = 8715.1108 kcal/mol (8709.6902 without restraints) Performing minimization step: 2025. Total energy = 8712.2687 kcal/mol (8706.8498 without restraints) Performing minimization step: 2026. Total energy = 8709.4281 kcal/mol (8704.0109 without restraints) Performing minimization step: 2027. Total energy = 8706.5885 kcal/mol (8701.1731 without restraints) Performing minimization step: 2028. Total energy = 8703.7507 kcal/mol (8698.3369 without restraints) Performing minimization step: 2029. Total energy = 8700.9140 kcal/mol (8695.5021 without restraints) Performing minimization step: 2030. Total energy = 8698.0790 kcal/mol (8692.6687 without restraints) Performing minimization step: 2031. Total energy = 8695.2455 kcal/mol (8689.8368 without restraints) Performing minimization step: 2032. Total energy = 8692.4132 kcal/mol (8687.0063 without restraints) Performing minimization step: 2033. Total energy = 8689.5822 kcal/mol (8684.1771 without restraints) Performing minimization step: 2034. Total energy = 8686.7530 kcal/mol (8681.3495 without restraints) Performing minimization step: 2035. Total energy = 8683.9247 kcal/mol (8678.5229 without restraints) Performing minimization step: 2036. Total energy = 8681.0980 kcal/mol (8675.6980 without restraints) Performing minimization step: 2037. Total energy = 8678.2722 kcal/mol (8672.8738 without restraints) Performing minimization step: 2038. Total energy = 8675.4487 kcal/mol (8670.0521 without restraints) Performing minimization step: 2039. Total energy = 8672.6258 kcal/mol (8667.2308 without restraints) Performing minimization step: 2040. Total energy = 8669.8039 kcal/mol (8664.4106 without restraints) Performing minimization step: 2041. Total energy = 8666.9837 kcal/mol (8661.5921 without restraints) Performing minimization step: 2042. Total energy = 8664.1648 kcal/mol (8658.7749 without restraints) Performing minimization step: 2043. Total energy = 8661.3472 kcal/mol (8655.9590 without restraints) Performing minimization step: 2044. Total energy = 8658.5314 kcal/mol (8653.1449 without restraints) Performing minimization step: 2045. Total energy = 8655.7164 kcal/mol (8650.3316 without restraints) Performing minimization step: 2046. Total energy = 8652.9026 kcal/mol (8647.5193 without restraints) Performing minimization step: 2047. Total energy = 8650.0902 kcal/mol (8644.7088 without restraints) Performing minimization step: 2048. Total energy = 8647.2793 kcal/mol (8641.8996 without restraints) Performing minimization step: 2049. Total energy = 8644.4699 kcal/mol (8639.0919 without restraints) Performing minimization step: 2050. Total energy = 8641.6615 kcal/mol (8636.2850 without restraints) Performing minimization step: 2051. Total energy = 8638.8540 kcal/mol (8633.4793 without restraints) Performing minimization step: 2052. Total energy = 8636.0484 kcal/mol (8630.6754 without restraints) Performing minimization step: 2053. Total energy = 8633.2434 kcal/mol (8627.8720 without restraints) Performing minimization step: 2054. Total energy = 8630.4402 kcal/mol (8625.0706 without restraints) Performing minimization step: 2055. Total energy = 8627.6386 kcal/mol (8622.2707 without restraints) Performing minimization step: 2056. Total energy = 8624.8381 kcal/mol (8619.4718 without restraints) Performing minimization step: 2057. Total energy = 8622.0387 kcal/mol (8616.6741 without restraints) Performing minimization step: 2058. Total energy = 8619.2407 kcal/mol (8613.8778 without restraints) Performing minimization step: 2059. Total energy = 8616.4441 kcal/mol (8611.0829 without restraints) Performing minimization step: 2060. Total energy = 8613.6488 kcal/mol (8608.2892 without restraints) Performing minimization step: 2061. Total energy = 8610.8549 kcal/mol (8605.4971 without restraints) Performing minimization step: 2062. Total energy = 8608.0621 kcal/mol (8602.7059 without restraints) Performing minimization step: 2063. Total energy = 8605.2706 kcal/mol (8599.9161 without restraints) Performing minimization step: 2064. Total energy = 8602.4804 kcal/mol (8597.1276 without restraints) Performing minimization step: 2065. Total energy = 8599.6910 kcal/mol (8594.3399 without restraints) Performing minimization step: 2066. Total energy = 8596.9034 kcal/mol (8591.5540 without restraints) Performing minimization step: 2067. Total energy = 8594.1166 kcal/mol (8588.7688 without restraints) Performing minimization step: 2068. Total energy = 8591.3314 kcal/mol (8585.9852 without restraints) Performing minimization step: 2069. Total energy = 8588.5471 kcal/mol (8583.2027 without restraints) Performing minimization step: 2070. Total energy = 8585.7644 kcal/mol (8580.4215 without restraints) Performing minimization step: 2071. Total energy = 8582.9829 kcal/mol (8577.6418 without restraints) Performing minimization step: 2072. Total energy = 8580.2027 kcal/mol (8574.8632 without restraints) Performing minimization step: 2073. Total energy = 8577.4237 kcal/mol (8572.0859 without restraints) Performing minimization step: 2074. Total energy = 8574.6458 kcal/mol (8569.3093 without restraints) Performing minimization step: 2075. Total energy = 8571.8693 kcal/mol (8566.5348 without restraints) Performing minimization step: 2076. Total energy = 8569.0939 kcal/mol (8563.7609 without restraints) Performing minimization step: 2077. Total energy = 8566.3195 kcal/mol (8560.9883 without restraints) Performing minimization step: 2078. Total energy = 8563.5471 kcal/mol (8558.2176 without restraints) Performing minimization step: 2079. Total energy = 8560.7760 kcal/mol (8555.4481 without restraints) Performing minimization step: 2080. Total energy = 8558.0058 kcal/mol (8552.6796 without restraints) Performing minimization step: 2081. Total energy = 8555.2362 kcal/mol (8549.9116 without restraints) Performing minimization step: 2082. Total energy = 8552.4684 kcal/mol (8547.1455 without restraints) Performing minimization step: 2083. Total energy = 8549.7016 kcal/mol (8544.3803 without restraints) Performing minimization step: 2084. Total energy = 8546.9359 kcal/mol (8541.6162 without restraints) Performing minimization step: 2085. Total energy = 8544.1717 kcal/mol (8538.8538 without restraints) Performing minimization step: 2086. Total energy = 8541.4084 kcal/mol (8536.0921 without restraints) Performing minimization step: 2087. Total energy = 8538.6462 kcal/mol (8533.3315 without restraints) Performing minimization step: 2088. Total energy = 8535.8857 kcal/mol (8530.5726 without restraints) Performing minimization step: 2089. Total energy = 8533.1266 kcal/mol (8527.8152 without restraints) Performing minimization step: 2090. Total energy = 8530.3680 kcal/mol (8525.0583 without restraints) Performing minimization step: 2091. Total energy = 8527.6115 kcal/mol (8522.3033 without restraints) Performing minimization step: 2092. Total energy = 8524.8557 kcal/mol (8519.5492 without restraints) Performing minimization step: 2093. Total energy = 8522.1011 kcal/mol (8516.7962 without restraints) Performing minimization step: 2094. Total energy = 8519.3476 kcal/mol (8514.0444 without restraints) Performing minimization step: 2095. Total energy = 8516.5952 kcal/mol (8511.2936 without restraints) Performing minimization step: 2096. Total energy = 8513.8436 kcal/mol (8508.5437 without restraints) Performing minimization step: 2097. Total energy = 8511.0945 kcal/mol (8505.7961 without restraints) Performing minimization step: 2098. Total energy = 8508.3458 kcal/mol (8503.0491 without restraints) Performing minimization step: 2099. Total energy = 8505.5981 kcal/mol (8500.3031 without restraints) Performing minimization step: 2100. Total energy = 8502.8514 kcal/mol (8497.5580 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 8500.1061 kcal/mol (8494.8143 without restraints) Performing minimization step: 2102. Total energy = 8497.3620 kcal/mol (8492.0720 without restraints) Performing minimization step: 2103. Total energy = 8494.6188 kcal/mol (8489.3303 without restraints) Performing minimization step: 2104. Total energy = 8491.8774 kcal/mol (8486.5905 without restraints) Performing minimization step: 2105. Total energy = 8489.1368 kcal/mol (8483.8514 without restraints) Performing minimization step: 2106. Total energy = 8486.3972 kcal/mol (8481.1136 without restraints) Performing minimization step: 2107. Total energy = 8483.6591 kcal/mol (8478.3771 without restraints) Performing minimization step: 2108. Total energy = 8480.9219 kcal/mol (8475.6415 without restraints) Performing minimization step: 2109. Total energy = 8478.1858 kcal/mol (8472.9070 without restraints) Performing minimization step: 2110. Total energy = 8475.4510 kcal/mol (8470.1740 without restraints) Performing minimization step: 2111. Total energy = 8472.7174 kcal/mol (8467.4418 without restraints) Performing minimization step: 2112. Total energy = 8469.9846 kcal/mol (8464.7107 without restraints) Performing minimization step: 2113. Total energy = 8467.2532 kcal/mol (8461.9809 without restraints) Performing minimization step: 2114. Total energy = 8464.5232 kcal/mol (8459.2524 without restraints) Performing minimization step: 2115. Total energy = 8461.7941 kcal/mol (8456.5250 without restraints) Performing minimization step: 2116. Total energy = 8459.0658 kcal/mol (8453.7983 without restraints) Performing minimization step: 2117. Total energy = 8456.3390 kcal/mol (8451.0732 without restraints) Performing minimization step: 2118. Total energy = 8453.6133 kcal/mol (8448.3490 without restraints) Performing minimization step: 2119. Total energy = 8450.8886 kcal/mol (8445.6260 without restraints) Performing minimization step: 2120. Total energy = 8448.1645 kcal/mol (8442.9035 without restraints) Performing minimization step: 2121. Total energy = 8445.4424 kcal/mol (8440.1833 without restraints) Performing minimization step: 2122. Total energy = 8442.7217 kcal/mol (8437.4639 without restraints) Performing minimization step: 2123. Total energy = 8440.0018 kcal/mol (8434.7455 without restraints) Performing minimization step: 2124. Total energy = 8437.2827 kcal/mol (8432.0282 without restraints) Performing minimization step: 2125. Total energy = 8434.5649 kcal/mol (8429.3119 without restraints) Performing minimization step: 2126. Total energy = 8431.8481 kcal/mol (8426.5967 without restraints) Performing minimization step: 2127. Total energy = 8429.1324 kcal/mol (8423.8826 without restraints) Performing minimization step: 2128. Total energy = 8426.4179 kcal/mol (8421.1697 without restraints) Performing minimization step: 2129. Total energy = 8423.7041 kcal/mol (8418.4574 without restraints) Performing minimization step: 2130. Total energy = 8420.9915 kcal/mol (8415.7464 without restraints) Performing minimization step: 2131. Total energy = 8418.2798 kcal/mol (8413.0364 without restraints) Performing minimization step: 2132. Total energy = 8415.5695 kcal/mol (8410.3277 without restraints) Performing minimization step: 2133. Total energy = 8412.8602 kcal/mol (8407.6199 without restraints) Performing minimization step: 2134. Total energy = 8410.1525 kcal/mol (8404.9138 without restraints) Performing minimization step: 2135. Total energy = 8407.4457 kcal/mol (8402.2086 without restraints) Performing minimization step: 2136. Total energy = 8404.7398 kcal/mol (8399.5042 without restraints) Performing minimization step: 2137. Total energy = 8402.0350 kcal/mol (8396.8012 without restraints) Performing minimization step: 2138. Total energy = 8399.3317 kcal/mol (8394.0995 without restraints) Performing minimization step: 2139. Total energy = 8396.6293 kcal/mol (8391.3985 without restraints) Performing minimization step: 2140. Total energy = 8393.9281 kcal/mol (8388.6990 without restraints) Performing minimization step: 2141. Total energy = 8391.2279 kcal/mol (8386.0004 without restraints) Performing minimization step: 2142. Total energy = 8388.5288 kcal/mol (8383.3029 without restraints) Performing minimization step: 2143. Total energy = 8385.8309 kcal/mol (8380.6067 without restraints) Performing minimization step: 2144. Total energy = 8383.1340 kcal/mol (8377.9114 without restraints) Performing minimization step: 2145. Total energy = 8380.4385 kcal/mol (8375.2173 without restraints) Performing minimization step: 2146. Total energy = 8377.7439 kcal/mol (8372.5244 without restraints) Performing minimization step: 2147. Total energy = 8375.0505 kcal/mol (8369.8325 without restraints) Performing minimization step: 2148. Total energy = 8372.3583 kcal/mol (8367.1418 without restraints) Performing minimization step: 2149. Total energy = 8369.6672 kcal/mol (8364.4523 without restraints) Performing minimization step: 2150. Total energy = 8366.9766 kcal/mol (8361.7633 without restraints) Performing minimization step: 2151. Total energy = 8364.2873 kcal/mol (8359.0756 without restraints) Performing minimization step: 2152. Total energy = 8361.5991 kcal/mol (8356.3890 without restraints) Performing minimization step: 2153. Total energy = 8358.9120 kcal/mol (8353.7033 without restraints) Performing minimization step: 2154. Total energy = 8356.2261 kcal/mol (8351.0191 without restraints) Performing minimization step: 2155. Total energy = 8353.5412 kcal/mol (8348.3358 without restraints) Performing minimization step: 2156. Total energy = 8350.8572 kcal/mol (8345.6534 without restraints) Performing minimization step: 2157. Total energy = 8348.1750 kcal/mol (8342.9727 without restraints) Performing minimization step: 2158. Total energy = 8345.4933 kcal/mol (8340.2926 without restraints) Performing minimization step: 2159. Total energy = 8342.8126 kcal/mol (8337.6135 without restraints) Performing minimization step: 2160. Total energy = 8340.1327 kcal/mol (8334.9351 without restraints) Performing minimization step: 2161. Total energy = 8337.4541 kcal/mol (8332.2581 without restraints) Performing minimization step: 2162. Total energy = 8334.7770 kcal/mol (8329.5825 without restraints) Performing minimization step: 2163. Total energy = 8332.1006 kcal/mol (8326.9077 without restraints) Performing minimization step: 2164. Total energy = 8329.4250 kcal/mol (8324.2336 without restraints) Performing minimization step: 2165. Total energy = 8326.7505 kcal/mol (8321.5607 without restraints) Performing minimization step: 2166. Total energy = 8324.0772 kcal/mol (8318.8890 without restraints) Performing minimization step: 2167. Total energy = 8321.4052 kcal/mol (8316.2186 without restraints) Performing minimization step: 2168. Total energy = 8318.7340 kcal/mol (8313.5490 without restraints) Performing minimization step: 2169. Total energy = 8316.0642 kcal/mol (8310.8808 without restraints) Performing minimization step: 2170. Total energy = 8313.3958 kcal/mol (8308.2138 without restraints) Performing minimization step: 2171. Total energy = 8310.7274 kcal/mol (8305.5470 without restraints) Performing minimization step: 2172. Total energy = 8308.0606 kcal/mol (8302.8818 without restraints) Performing minimization step: 2173. Total energy = 8305.3947 kcal/mol (8300.2173 without restraints) Performing minimization step: 2174. Total energy = 8302.7296 kcal/mol (8297.5538 without restraints) Performing minimization step: 2175. Total energy = 8300.0658 kcal/mol (8294.8916 without restraints) Performing minimization step: 2176. Total energy = 8297.4031 kcal/mol (8292.2303 without restraints) Performing minimization step: 2177. Total energy = 8294.7416 kcal/mol (8289.5705 without restraints) Performing minimization step: 2178. Total energy = 8292.0810 kcal/mol (8286.9115 without restraints) Performing minimization step: 2179. Total energy = 8289.4217 kcal/mol (8284.2537 without restraints) Performing minimization step: 2180. Total energy = 8286.7628 kcal/mol (8281.5963 without restraints) Performing minimization step: 2181. Total energy = 8284.1057 kcal/mol (8278.9408 without restraints) Performing minimization step: 2182. Total energy = 8281.4495 kcal/mol (8276.2861 without restraints) Performing minimization step: 2183. Total energy = 8278.7941 kcal/mol (8273.6324 without restraints) Performing minimization step: 2184. Total energy = 8276.1399 kcal/mol (8270.9796 without restraints) Performing minimization step: 2185. Total energy = 8273.4866 kcal/mol (8268.3279 without restraints) Performing minimization step: 2186. Total energy = 8270.8346 kcal/mol (8265.6775 without restraints) Performing minimization step: 2187. Total energy = 8268.1839 kcal/mol (8263.0283 without restraints) Performing minimization step: 2188. Total energy = 8265.5336 kcal/mol (8260.3795 without restraints) Performing minimization step: 2189. Total energy = 8262.8845 kcal/mol (8257.7320 without restraints) Performing minimization step: 2190. Total energy = 8260.2365 kcal/mol (8255.0855 without restraints) Performing minimization step: 2191. Total energy = 8257.5896 kcal/mol (8252.4402 without restraints) Performing minimization step: 2192. Total energy = 8254.9443 kcal/mol (8249.7966 without restraints) Performing minimization step: 2193. Total energy = 8252.2996 kcal/mol (8247.1532 without restraints) Performing minimization step: 2194. Total energy = 8249.6558 kcal/mol (8244.5109 without restraints) Performing minimization step: 2195. Total energy = 8247.0129 kcal/mol (8241.8696 without restraints) Performing minimization step: 2196. Total energy = 8244.3709 kcal/mol (8239.2290 without restraints) Performing minimization step: 2197. Total energy = 8241.7300 kcal/mol (8236.5896 without restraints) Performing minimization step: 2198. Total energy = 8239.0902 kcal/mol (8233.9514 without restraints) Performing minimization step: 2199. Total energy = 8236.4515 kcal/mol (8231.3144 without restraints) Performing minimization step: 2200. Total energy = 8233.8140 kcal/mol (8228.6783 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 8231.1778 kcal/mol (8226.0436 without restraints) Performing minimization step: 2202. Total energy = 8228.5423 kcal/mol (8223.4098 without restraints) Performing minimization step: 2203. Total energy = 8225.9079 kcal/mol (8220.7768 without restraints) Performing minimization step: 2204. Total energy = 8223.2744 kcal/mol (8218.1448 without restraints) Performing minimization step: 2205. Total energy = 8220.6419 kcal/mol (8215.5139 without restraints) Performing minimization step: 2206. Total energy = 8218.0112 kcal/mol (8212.8847 without restraints) Performing minimization step: 2207. Total energy = 8215.3807 kcal/mol (8210.2557 without restraints) Performing minimization step: 2208. Total energy = 8212.7513 kcal/mol (8207.6278 without restraints) Performing minimization step: 2209. Total energy = 8210.1231 kcal/mol (8205.0012 without restraints) Performing minimization step: 2210. Total energy = 8207.4958 kcal/mol (8202.3754 without restraints) Performing minimization step: 2211. Total energy = 8204.8697 kcal/mol (8199.7507 without restraints) Performing minimization step: 2212. Total energy = 8202.2445 kcal/mol (8197.1271 without restraints) Performing minimization step: 2213. Total energy = 8199.6201 kcal/mol (8194.5042 without restraints) Performing minimization step: 2214. Total energy = 8196.9970 kcal/mol (8191.8826 without restraints) Performing minimization step: 2215. Total energy = 8194.3747 kcal/mol (8189.2619 without restraints) Performing minimization step: 2216. Total energy = 8191.7536 kcal/mol (8186.6422 without restraints) Performing minimization step: 2217. Total energy = 8189.1337 kcal/mol (8184.0238 without restraints) Performing minimization step: 2218. Total energy = 8186.5146 kcal/mol (8181.4062 without restraints) Performing minimization step: 2219. Total energy = 8183.8965 kcal/mol (8178.7897 without restraints) Performing minimization step: 2220. Total energy = 8181.2795 kcal/mol (8176.1742 without restraints) Performing minimization step: 2221. Total energy = 8178.6637 kcal/mol (8173.5599 without restraints) Performing minimization step: 2222. Total energy = 8176.0486 kcal/mol (8170.9464 without restraints) Performing minimization step: 2223. Total energy = 8173.4349 kcal/mol (8168.3342 without restraints) Performing minimization step: 2224. Total energy = 8170.8222 kcal/mol (8165.7230 without restraints) Performing minimization step: 2225. Total energy = 8168.2107 kcal/mol (8163.1130 without restraints) Performing minimization step: 2226. Total energy = 8165.5999 kcal/mol (8160.5036 without restraints) Performing minimization step: 2227. Total energy = 8162.9898 kcal/mol (8157.8951 without restraints) Performing minimization step: 2228. Total energy = 8160.3814 kcal/mol (8155.2884 without restraints) Performing minimization step: 2229. Total energy = 8157.7735 kcal/mol (8152.6819 without restraints) Performing minimization step: 2230. Total energy = 8155.1669 kcal/mol (8150.0767 without restraints) Performing minimization step: 2231. Total energy = 8152.5614 kcal/mol (8147.4727 without restraints) Performing minimization step: 2232. Total energy = 8149.9573 kcal/mol (8144.8702 without restraints) Performing minimization step: 2233. Total energy = 8147.3538 kcal/mol (8142.2681 without restraints) Performing minimization step: 2234. Total energy = 8144.7511 kcal/mol (8139.6669 without restraints) Performing minimization step: 2235. Total energy = 8142.1495 kcal/mol (8137.0668 without restraints) Performing minimization step: 2236. Total energy = 8139.5490 kcal/mol (8134.4678 without restraints) Performing minimization step: 2237. Total energy = 8136.9495 kcal/mol (8131.8698 without restraints) Performing minimization step: 2238. Total energy = 8134.3506 kcal/mol (8129.2723 without restraints) Performing minimization step: 2239. Total energy = 8131.7532 kcal/mol (8126.6764 without restraints) Performing minimization step: 2240. Total energy = 8129.1564 kcal/mol (8124.0811 without restraints) Performing minimization step: 2241. Total energy = 8126.5609 kcal/mol (8121.4871 without restraints) Performing minimization step: 2242. Total energy = 8123.9671 kcal/mol (8118.8948 without restraints) Performing minimization step: 2243. Total energy = 8121.3739 kcal/mol (8116.3030 without restraints) Performing minimization step: 2244. Total energy = 8118.7819 kcal/mol (8113.7126 without restraints) Performing minimization step: 2245. Total energy = 8116.1908 kcal/mol (8111.1230 without restraints) Performing minimization step: 2246. Total energy = 8113.6007 kcal/mol (8108.5345 without restraints) Performing minimization step: 2247. Total energy = 8111.0116 kcal/mol (8105.9468 without restraints) Performing minimization step: 2248. Total energy = 8108.4237 kcal/mol (8103.3604 without restraints) Performing minimization step: 2249. Total energy = 8105.8363 kcal/mol (8100.7744 without restraints) Performing minimization step: 2250. Total energy = 8103.2505 kcal/mol (8098.1902 without restraints) Performing minimization step: 2251. Total energy = 8100.6656 kcal/mol (8095.6068 without restraints) Performing minimization step: 2252. Total energy = 8098.0818 kcal/mol (8093.0244 without restraints) Performing minimization step: 2253. Total energy = 8095.4988 kcal/mol (8090.4429 without restraints) Performing minimization step: 2254. Total energy = 8092.9166 kcal/mol (8087.8622 without restraints) Performing minimization step: 2255. Total energy = 8090.3354 kcal/mol (8085.2825 without restraints) Performing minimization step: 2256. Total energy = 8087.7558 kcal/mol (8082.7045 without restraints) Performing minimization step: 2257. Total energy = 8085.1771 kcal/mol (8080.1272 without restraints) Performing minimization step: 2258. Total energy = 8082.5993 kcal/mol (8077.5508 without restraints) Performing minimization step: 2259. Total energy = 8080.0222 kcal/mol (8074.9752 without restraints) Performing minimization step: 2260. Total energy = 8077.4462 kcal/mol (8072.4007 without restraints) Performing minimization step: 2261. Total energy = 8074.8712 kcal/mol (8069.8272 without restraints) Performing minimization step: 2262. Total energy = 8072.2976 kcal/mol (8067.2551 without restraints) Performing minimization step: 2263. Total energy = 8069.7247 kcal/mol (8064.6836 without restraints) Performing minimization step: 2264. Total energy = 8067.1524 kcal/mol (8062.1128 without restraints) Performing minimization step: 2265. Total energy = 8064.5815 kcal/mol (8059.5434 without restraints) Performing minimization step: 2266. Total energy = 8062.0112 kcal/mol (8056.9746 without restraints) Performing minimization step: 2267. Total energy = 8059.4423 kcal/mol (8054.4072 without restraints) Performing minimization step: 2268. Total energy = 8056.8745 kcal/mol (8051.8408 without restraints) Performing minimization step: 2269. Total energy = 8054.3080 kcal/mol (8049.2757 without restraints) Performing minimization step: 2270. Total energy = 8051.7425 kcal/mol (8046.7118 without restraints) Performing minimization step: 2271. Total energy = 8049.1779 kcal/mol (8044.1486 without restraints) Performing minimization step: 2272. Total energy = 8046.6144 kcal/mol (8041.5865 without restraints) Performing minimization step: 2273. Total energy = 8044.0518 kcal/mol (8039.0255 without restraints) Performing minimization step: 2274. Total energy = 8041.4902 kcal/mol (8036.4653 without restraints) Performing minimization step: 2275. Total energy = 8038.9296 kcal/mol (8033.9062 without restraints) Performing minimization step: 2276. Total energy = 8036.3700 kcal/mol (8031.3481 without restraints) Performing minimization step: 2277. Total energy = 8033.8115 kcal/mol (8028.7910 without restraints) Performing minimization step: 2278. Total energy = 8031.2537 kcal/mol (8026.2347 without restraints) Performing minimization step: 2279. Total energy = 8028.6975 kcal/mol (8023.6800 without restraints) Performing minimization step: 2280. Total energy = 8026.1421 kcal/mol (8021.1260 without restraints) Performing minimization step: 2281. Total energy = 8023.5876 kcal/mol (8018.5731 without restraints) Performing minimization step: 2282. Total energy = 8021.0345 kcal/mol (8016.0215 without restraints) Performing minimization step: 2283. Total energy = 8018.4823 kcal/mol (8013.4706 without restraints) Performing minimization step: 2284. Total energy = 8015.9311 kcal/mol (8010.9208 without restraints) Performing minimization step: 2285. Total energy = 8013.3808 kcal/mol (8008.3720 without restraints) Performing minimization step: 2286. Total energy = 8010.8315 kcal/mol (8005.8241 without restraints) Performing minimization step: 2287. Total energy = 8008.2840 kcal/mol (8003.2782 without restraints) Performing minimization step: 2288. Total energy = 8005.7370 kcal/mol (8000.7325 without restraints) Performing minimization step: 2289. Total energy = 8003.1909 kcal/mol (7998.1880 without restraints) Performing minimization step: 2290. Total energy = 8000.6458 kcal/mol (7995.6443 without restraints) Performing minimization step: 2291. Total energy = 7998.1017 kcal/mol (7993.1017 without restraints) Performing minimization step: 2292. Total energy = 7995.5586 kcal/mol (7990.5600 without restraints) Performing minimization step: 2293. Total energy = 7993.0165 kcal/mol (7988.0194 without restraints) Performing minimization step: 2294. Total energy = 7990.4754 kcal/mol (7985.4798 without restraints) Performing minimization step: 2295. Total energy = 7987.9356 kcal/mol (7982.9414 without restraints) Performing minimization step: 2296. Total energy = 7985.3964 kcal/mol (7980.4036 without restraints) Performing minimization step: 2297. Total energy = 7982.8590 kcal/mol (7977.8676 without restraints) Performing minimization step: 2298. Total energy = 7980.3220 kcal/mol (7975.3321 without restraints) Performing minimization step: 2299. Total energy = 7977.7862 kcal/mol (7972.7977 without restraints) Performing minimization step: 2300. Total energy = 7975.2515 kcal/mol (7970.2645 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 7972.7177 kcal/mol (7967.7322 without restraints) Performing minimization step: 2302. Total energy = 7970.1851 kcal/mol (7965.2011 without restraints) Performing minimization step: 2303. Total energy = 7967.6535 kcal/mol (7962.6708 without restraints) Performing minimization step: 2304. Total energy = 7965.1230 kcal/mol (7960.1418 without restraints) Performing minimization step: 2305. Total energy = 7962.5933 kcal/mol (7957.6135 without restraints) Performing minimization step: 2306. Total energy = 7960.0652 kcal/mol (7955.0869 without restraints) Performing minimization step: 2307. Total energy = 7957.5376 kcal/mol (7952.5608 without restraints) Performing minimization step: 2308. Total energy = 7955.0111 kcal/mol (7950.0356 without restraints) Performing minimization step: 2309. Total energy = 7952.4855 kcal/mol (7947.5115 without restraints) Performing minimization step: 2310. Total energy = 7949.9610 kcal/mol (7944.9884 without restraints) Performing minimization step: 2311. Total energy = 7947.4375 kcal/mol (7942.4664 without restraints) Performing minimization step: 2312. Total energy = 7944.9150 kcal/mol (7939.9454 without restraints) Performing minimization step: 2313. Total energy = 7942.3938 kcal/mol (7937.4256 without restraints) Performing minimization step: 2314. Total energy = 7939.8735 kcal/mol (7934.9067 without restraints) Performing minimization step: 2315. Total energy = 7937.3544 kcal/mol (7932.3891 without restraints) Performing minimization step: 2316. Total energy = 7934.8358 kcal/mol (7929.8718 without restraints) Performing minimization step: 2317. Total energy = 7932.3186 kcal/mol (7927.3561 without restraints) Performing minimization step: 2318. Total energy = 7929.8021 kcal/mol (7924.8411 without restraints) Performing minimization step: 2319. Total energy = 7927.2870 kcal/mol (7922.3274 without restraints) Performing minimization step: 2320. Total energy = 7924.7729 kcal/mol (7919.8148 without restraints) Performing minimization step: 2321. Total energy = 7922.2600 kcal/mol (7917.3034 without restraints) Performing minimization step: 2322. Total energy = 7919.7485 kcal/mol (7914.7932 without restraints) Performing minimization step: 2323. Total energy = 7917.2375 kcal/mol (7912.2836 without restraints) Performing minimization step: 2324. Total energy = 7914.7278 kcal/mol (7909.7753 without restraints) Performing minimization step: 2325. Total energy = 7912.2189 kcal/mol (7907.2678 without restraints) Performing minimization step: 2326. Total energy = 7909.7110 kcal/mol (7904.7614 without restraints) Performing minimization step: 2327. Total energy = 7907.2043 kcal/mol (7902.2561 without restraints) Performing minimization step: 2328. Total energy = 7904.6985 kcal/mol (7899.7517 without restraints) Performing minimization step: 2329. Total energy = 7902.1937 kcal/mol (7897.2484 without restraints) Performing minimization step: 2330. Total energy = 7899.6902 kcal/mol (7894.7463 without restraints) Performing minimization step: 2331. Total energy = 7897.1875 kcal/mol (7892.2450 without restraints) Performing minimization step: 2332. Total energy = 7894.6865 kcal/mol (7889.7455 without restraints) Performing minimization step: 2333. Total energy = 7892.1862 kcal/mol (7887.2465 without restraints) Performing minimization step: 2334. Total energy = 7889.6868 kcal/mol (7884.7486 without restraints) Performing minimization step: 2335. Total energy = 7887.1885 kcal/mol (7882.2518 without restraints) Performing minimization step: 2336. Total energy = 7884.6909 kcal/mol (7879.7556 without restraints) Performing minimization step: 2337. Total energy = 7882.1945 kcal/mol (7877.2606 without restraints) Performing minimization step: 2338. Total energy = 7879.6991 kcal/mol (7874.7666 without restraints) Performing minimization step: 2339. Total energy = 7877.2046 kcal/mol (7872.2734 without restraints) Performing minimization step: 2340. Total energy = 7874.7110 kcal/mol (7869.7813 without restraints) Performing minimization step: 2341. Total energy = 7872.2192 kcal/mol (7867.2911 without restraints) Performing minimization step: 2342. Total energy = 7869.7282 kcal/mol (7864.8014 without restraints) Performing minimization step: 2343. Total energy = 7867.2379 kcal/mol (7862.3125 without restraints) Performing minimization step: 2344. Total energy = 7864.7487 kcal/mol (7859.8246 without restraints) Performing minimization step: 2345. Total energy = 7862.2606 kcal/mol (7857.3380 without restraints) Performing minimization step: 2346. Total energy = 7859.7736 kcal/mol (7854.8525 without restraints) Performing minimization step: 2347. Total energy = 7857.2877 kcal/mol (7852.3680 without restraints) Performing minimization step: 2348. Total energy = 7854.8025 kcal/mol (7849.8842 without restraints) Performing minimization step: 2349. Total energy = 7852.3187 kcal/mol (7847.4018 without restraints) Performing minimization step: 2350. Total energy = 7849.8358 kcal/mol (7844.9203 without restraints) Performing minimization step: 2351. Total energy = 7847.3544 kcal/mol (7842.4404 without restraints) Performing minimization step: 2352. Total energy = 7844.8739 kcal/mol (7839.9612 without restraints) Performing minimization step: 2353. Total energy = 7842.3943 kcal/mol (7837.4830 without restraints) Performing minimization step: 2354. Total energy = 7839.9158 kcal/mol (7835.0059 without restraints) Performing minimization step: 2355. Total energy = 7837.4383 kcal/mol (7832.5297 without restraints) Performing minimization step: 2356. Total energy = 7834.9625 kcal/mol (7830.0556 without restraints) Performing minimization step: 2357. Total energy = 7832.4871 kcal/mol (7827.5815 without restraints) Performing minimization step: 2358. Total energy = 7830.0131 kcal/mol (7825.1088 without restraints) Performing minimization step: 2359. Total energy = 7827.5398 kcal/mol (7822.6370 without restraints) Performing minimization step: 2360. Total energy = 7825.0683 kcal/mol (7820.1669 without restraints) Performing minimization step: 2361. Total energy = 7822.5971 kcal/mol (7817.6971 without restraints) Performing minimization step: 2362. Total energy = 7820.1271 kcal/mol (7815.2285 without restraints) Performing minimization step: 2363. Total energy = 7817.6581 kcal/mol (7812.7609 without restraints) Performing minimization step: 2364. Total energy = 7815.1903 kcal/mol (7810.2947 without restraints) Performing minimization step: 2365. Total energy = 7812.7238 kcal/mol (7807.8294 without restraints) Performing minimization step: 2366. Total energy = 7810.2579 kcal/mol (7805.3650 without restraints) Performing minimization step: 2367. Total energy = 7807.7933 kcal/mol (7802.9017 without restraints) Performing minimization step: 2368. Total energy = 7805.3296 kcal/mol (7800.4394 without restraints) Performing minimization step: 2369. Total energy = 7802.8670 kcal/mol (7797.9782 without restraints) Performing minimization step: 2370. Total energy = 7800.4055 kcal/mol (7795.5181 without restraints) Performing minimization step: 2371. Total energy = 7797.9450 kcal/mol (7793.0590 without restraints) Performing minimization step: 2372. Total energy = 7795.4852 kcal/mol (7790.6006 without restraints) Performing minimization step: 2373. Total energy = 7793.0268 kcal/mol (7788.1436 without restraints) Performing minimization step: 2374. Total energy = 7790.5694 kcal/mol (7785.6877 without restraints) Performing minimization step: 2375. Total energy = 7788.1129 kcal/mol (7783.2325 without restraints) Performing minimization step: 2376. Total energy = 7785.6577 kcal/mol (7780.7787 without restraints) Performing minimization step: 2377. Total energy = 7783.2034 kcal/mol (7778.3258 without restraints) Performing minimization step: 2378. Total energy = 7780.7504 kcal/mol (7775.8742 without restraints) Performing minimization step: 2379. Total energy = 7778.2982 kcal/mol (7773.4234 without restraints) Performing minimization step: 2380. Total energy = 7775.8472 kcal/mol (7770.9738 without restraints) Performing minimization step: 2381. Total energy = 7773.3972 kcal/mol (7768.5254 without restraints) Performing minimization step: 2382. Total energy = 7770.9486 kcal/mol (7766.0779 without restraints) Performing minimization step: 2383. Total energy = 7768.5007 kcal/mol (7763.6315 without restraints) Performing minimization step: 2384. Total energy = 7766.0540 kcal/mol (7761.1861 without restraints) Performing minimization step: 2385. Total energy = 7763.6090 kcal/mol (7758.7426 without restraints) Performing minimization step: 2386. Total energy = 7761.1642 kcal/mol (7756.2992 without restraints) Performing minimization step: 2387. Total energy = 7758.7208 kcal/mol (7753.8571 without restraints) Performing minimization step: 2388. Total energy = 7756.2786 kcal/mol (7751.4163 without restraints) Performing minimization step: 2389. Total energy = 7753.8371 kcal/mol (7748.9762 without restraints) Performing minimization step: 2390. Total energy = 7751.3966 kcal/mol (7746.5371 without restraints) Performing minimization step: 2391. Total energy = 7748.9580 kcal/mol (7744.0999 without restraints) Performing minimization step: 2392. Total energy = 7746.5205 kcal/mol (7741.6639 without restraints) Performing minimization step: 2393. Total energy = 7744.0840 kcal/mol (7739.2286 without restraints) Performing minimization step: 2394. Total energy = 7741.6481 kcal/mol (7736.7941 without restraints) Performing minimization step: 2395. Total energy = 7739.2131 kcal/mol (7734.3605 without restraints) Performing minimization step: 2396. Total energy = 7736.7793 kcal/mol (7731.9281 without restraints) Performing minimization step: 2397. Total energy = 7734.3467 kcal/mol (7729.4969 without restraints) Performing minimization step: 2398. Total energy = 7731.9152 kcal/mol (7727.0668 without restraints) Performing minimization step: 2399. Total energy = 7729.4850 kcal/mol (7724.6379 without restraints) Performing minimization step: 2400. Total energy = 7727.0554 kcal/mol (7722.2098 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 7724.6273 kcal/mol (7719.7831 without restraints) Performing minimization step: 2402. Total energy = 7722.2002 kcal/mol (7717.3572 without restraints) Performing minimization step: 2403. Total energy = 7719.7738 kcal/mol (7714.9323 without restraints) Performing minimization step: 2404. Total energy = 7717.3488 kcal/mol (7712.5086 without restraints) Performing minimization step: 2405. Total energy = 7714.9252 kcal/mol (7710.0864 without restraints) Performing minimization step: 2406. Total energy = 7712.5023 kcal/mol (7707.6649 without restraints) Performing minimization step: 2407. Total energy = 7710.0804 kcal/mol (7705.2443 without restraints) Performing minimization step: 2408. Total energy = 7707.6594 kcal/mol (7702.8248 without restraints) Performing minimization step: 2409. Total energy = 7705.2401 kcal/mol (7700.4067 without restraints) Performing minimization step: 2410. Total energy = 7702.8214 kcal/mol (7697.9894 without restraints) Performing minimization step: 2411. Total energy = 7700.4039 kcal/mol (7695.5734 without restraints) Performing minimization step: 2412. Total energy = 7697.9876 kcal/mol (7693.1585 without restraints) Performing minimization step: 2413. Total energy = 7695.5728 kcal/mol (7690.7450 without restraints) Performing minimization step: 2414. Total energy = 7693.1586 kcal/mol (7688.3322 without restraints) Performing minimization step: 2415. Total energy = 7690.7454 kcal/mol (7685.9203 without restraints) Performing minimization step: 2416. Total energy = 7688.3339 kcal/mol (7683.5102 without restraints) Performing minimization step: 2417. Total energy = 7685.9228 kcal/mol (7681.1005 without restraints) Performing minimization step: 2418. Total energy = 7683.5130 kcal/mol (7678.6921 without restraints) Performing minimization step: 2419. Total energy = 7681.1047 kcal/mol (7676.2851 without restraints) Performing minimization step: 2420. Total energy = 7678.6970 kcal/mol (7673.8788 without restraints) Performing minimization step: 2421. Total energy = 7676.2907 kcal/mol (7671.4741 without restraints) Performing minimization step: 2422. Total energy = 7673.8855 kcal/mol (7669.0701 without restraints) Performing minimization step: 2423. Total energy = 7671.4812 kcal/mol (7666.6671 without restraints) Performing minimization step: 2424. Total energy = 7669.0779 kcal/mol (7664.2652 without restraints) Performing minimization step: 2425. Total energy = 7666.6760 kcal/mol (7661.8646 without restraints) Performing minimization step: 2426. Total energy = 7664.2749 kcal/mol (7659.4649 without restraints) Performing minimization step: 2427. Total energy = 7661.8750 kcal/mol (7657.0664 without restraints) Performing minimization step: 2428. Total energy = 7659.4761 kcal/mol (7654.6689 without restraints) Performing minimization step: 2429. Total energy = 7657.0783 kcal/mol (7652.2725 without restraints) Performing minimization step: 2430. Total energy = 7654.6817 kcal/mol (7649.8772 without restraints) Performing minimization step: 2431. Total energy = 7652.2864 kcal/mol (7647.4830 without restraints) Performing minimization step: 2432. Total energy = 7649.8916 kcal/mol (7645.0899 without restraints) Performing minimization step: 2433. Total energy = 7647.4988 kcal/mol (7642.6983 without restraints) Performing minimization step: 2434. Total energy = 7645.1065 kcal/mol (7640.3074 without restraints) Performing minimization step: 2435. Total energy = 7642.7158 kcal/mol (7637.9181 without restraints) Performing minimization step: 2436. Total energy = 7640.3260 kcal/mol (7635.5296 without restraints) Performing minimization step: 2437. Total energy = 7637.9379 kcal/mol (7633.1429 without restraints) Performing minimization step: 2438. Total energy = 7635.5501 kcal/mol (7630.7564 without restraints) Performing minimization step: 2439. Total energy = 7633.1632 kcal/mol (7628.3709 without restraints) Performing minimization step: 2440. Total energy = 7630.7777 kcal/mol (7625.9869 without restraints) Performing minimization step: 2441. Total energy = 7628.3934 kcal/mol (7623.6038 without restraints) Performing minimization step: 2442. Total energy = 7626.0103 kcal/mol (7621.2221 without restraints) Performing minimization step: 2443. Total energy = 7623.6279 kcal/mol (7618.8409 without restraints) Performing minimization step: 2444. Total energy = 7621.2470 kcal/mol (7616.4615 without restraints) Performing minimization step: 2445. Total energy = 7618.8668 kcal/mol (7614.0826 without restraints) Performing minimization step: 2446. Total energy = 7616.4885 kcal/mol (7611.7058 without restraints) Performing minimization step: 2447. Total energy = 7614.1112 kcal/mol (7609.3298 without restraints) Performing minimization step: 2448. Total energy = 7611.7348 kcal/mol (7606.9548 without restraints) Performing minimization step: 2449. Total energy = 7609.3591 kcal/mol (7604.5803 without restraints) Performing minimization step: 2450. Total energy = 7606.9846 kcal/mol (7602.2073 without restraints) Performing minimization step: 2451. Total energy = 7604.6116 kcal/mol (7599.8356 without restraints) Performing minimization step: 2452. Total energy = 7602.2395 kcal/mol (7597.4649 without restraints) Performing minimization step: 2453. Total energy = 7599.8682 kcal/mol (7595.0949 without restraints) Performing minimization step: 2454. Total energy = 7597.4987 kcal/mol (7592.7268 without restraints) Performing minimization step: 2455. Total energy = 7595.1300 kcal/mol (7590.3595 without restraints) Performing minimization step: 2456. Total energy = 7592.7621 kcal/mol (7587.9929 without restraints) Performing minimization step: 2457. Total energy = 7590.3956 kcal/mol (7585.6276 without restraints) Performing minimization step: 2458. Total energy = 7588.0300 kcal/mol (7583.2635 without restraints) Performing minimization step: 2459. Total energy = 7585.6658 kcal/mol (7580.9007 without restraints) Performing minimization step: 2460. Total energy = 7583.3029 kcal/mol (7578.5390 without restraints) Performing minimization step: 2461. Total energy = 7580.9412 kcal/mol (7576.1787 without restraints) Performing minimization step: 2462. Total energy = 7578.5801 kcal/mol (7573.8189 without restraints) Performing minimization step: 2463. Total energy = 7576.2202 kcal/mol (7571.4604 without restraints) Performing minimization step: 2464. Total energy = 7573.8615 kcal/mol (7569.1030 without restraints) Performing minimization step: 2465. Total energy = 7571.5035 kcal/mol (7566.7464 without restraints) Performing minimization step: 2466. Total energy = 7569.1474 kcal/mol (7564.3916 without restraints) Performing minimization step: 2467. Total energy = 7566.7920 kcal/mol (7562.0375 without restraints) Performing minimization step: 2468. Total energy = 7564.4372 kcal/mol (7559.6841 without restraints) Performing minimization step: 2469. Total energy = 7562.0839 kcal/mol (7557.3321 without restraints) Performing minimization step: 2470. Total energy = 7559.7319 kcal/mol (7554.9815 without restraints) Performing minimization step: 2471. Total energy = 7557.3813 kcal/mol (7552.6323 without restraints) Performing minimization step: 2472. Total energy = 7555.0317 kcal/mol (7550.2839 without restraints) Performing minimization step: 2473. Total energy = 7552.6833 kcal/mol (7547.9370 without restraints) Performing minimization step: 2474. Total energy = 7550.3361 kcal/mol (7545.5910 without restraints) Performing minimization step: 2475. Total energy = 7547.9898 kcal/mol (7543.2461 without restraints) Performing minimization step: 2476. Total energy = 7545.6449 kcal/mol (7540.9024 without restraints) Performing minimization step: 2477. Total energy = 7543.3009 kcal/mol (7538.5598 without restraints) Performing minimization step: 2478. Total energy = 7540.9583 kcal/mol (7536.2187 without restraints) Performing minimization step: 2479. Total energy = 7538.6167 kcal/mol (7533.8783 without restraints) Performing minimization step: 2480. Total energy = 7536.2764 kcal/mol (7531.5394 without restraints) Performing minimization step: 2481. Total energy = 7533.9369 kcal/mol (7529.2012 without restraints) Performing minimization step: 2482. Total energy = 7531.5989 kcal/mol (7526.8646 without restraints) Performing minimization step: 2483. Total energy = 7529.2620 kcal/mol (7524.5290 without restraints) Performing minimization step: 2484. Total energy = 7526.9260 kcal/mol (7522.1942 without restraints) Performing minimization step: 2485. Total energy = 7524.5911 kcal/mol (7519.8608 without restraints) Performing minimization step: 2486. Total energy = 7522.2580 kcal/mol (7517.5289 without restraints) Performing minimization step: 2487. Total energy = 7519.9256 kcal/mol (7515.1979 without restraints) Performing minimization step: 2488. Total energy = 7517.5943 kcal/mol (7512.8679 without restraints) Performing minimization step: 2489. Total energy = 7515.2642 kcal/mol (7510.5393 without restraints) Performing minimization step: 2490. Total energy = 7512.9354 kcal/mol (7508.2117 without restraints) Performing minimization step: 2491. Total energy = 7510.6077 kcal/mol (7505.8853 without restraints) Performing minimization step: 2492. Total energy = 7508.2813 kcal/mol (7503.5603 without restraints) Performing minimization step: 2493. Total energy = 7505.9555 kcal/mol (7501.2357 without restraints) Performing minimization step: 2494. Total energy = 7503.6312 kcal/mol (7498.9129 without restraints) Performing minimization step: 2495. Total energy = 7501.3081 kcal/mol (7496.5910 without restraints) Performing minimization step: 2496. Total energy = 7498.9862 kcal/mol (7494.2705 without restraints) Performing minimization step: 2497. Total energy = 7496.6653 kcal/mol (7491.9509 without restraints) Performing minimization step: 2498. Total energy = 7494.3453 kcal/mol (7489.6322 without restraints) Performing minimization step: 2499. Total energy = 7492.0267 kcal/mol (7487.3150 without restraints) Performing minimization step: 2500. Total energy = 7489.7091 kcal/mol (7484.9987 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 7487.3928 kcal/mol (7482.6837 without restraints) Performing minimization step: 2502. Total energy = 7485.0773 kcal/mol (7480.3696 without restraints) Performing minimization step: 2503. Total energy = 7482.7635 kcal/mol (7478.0570 without restraints) Performing minimization step: 2504. Total energy = 7480.4508 kcal/mol (7475.7458 without restraints) Performing minimization step: 2505. Total energy = 7478.1395 kcal/mol (7473.4358 without restraints) Performing minimization step: 2506. Total energy = 7475.8295 kcal/mol (7471.1270 without restraints) Performing minimization step: 2507. Total energy = 7473.5201 kcal/mol (7468.8190 without restraints) Performing minimization step: 2508. Total energy = 7471.2121 kcal/mol (7466.5123 without restraints) Performing minimization step: 2509. Total energy = 7468.9051 kcal/mol (7464.2066 without restraints) Performing minimization step: 2510. Total energy = 7466.5994 kcal/mol (7461.9023 without restraints) Performing minimization step: 2511. Total energy = 7464.2942 kcal/mol (7459.5983 without restraints) Performing minimization step: 2512. Total energy = 7461.9906 kcal/mol (7457.2960 without restraints) Performing minimization step: 2513. Total energy = 7459.6883 kcal/mol (7454.9950 without restraints) Performing minimization step: 2514. Total energy = 7457.3872 kcal/mol (7452.6953 without restraints) Performing minimization step: 2515. Total energy = 7455.0874 kcal/mol (7450.3968 without restraints) Performing minimization step: 2516. Total energy = 7452.7886 kcal/mol (7448.0993 without restraints) Performing minimization step: 2517. Total energy = 7450.4913 kcal/mol (7445.8034 without restraints) Performing minimization step: 2518. Total energy = 7448.1950 kcal/mol (7443.5085 without restraints) Performing minimization step: 2519. Total energy = 7445.9005 kcal/mol (7441.2152 without restraints) Performing minimization step: 2520. Total energy = 7443.6066 kcal/mol (7438.9227 without restraints) Performing minimization step: 2521. Total energy = 7441.3137 kcal/mol (7436.6310 without restraints) Performing minimization step: 2522. Total energy = 7439.0223 kcal/mol (7434.3411 without restraints) Performing minimization step: 2523. Total energy = 7436.7321 kcal/mol (7432.0521 without restraints) Performing minimization step: 2524. Total energy = 7434.4431 kcal/mol (7429.7644 without restraints) Performing minimization step: 2525. Total energy = 7432.1549 kcal/mol (7427.4774 without restraints) Performing minimization step: 2526. Total energy = 7429.8680 kcal/mol (7425.1920 without restraints) Performing minimization step: 2527. Total energy = 7427.5827 kcal/mol (7422.9080 without restraints) Performing minimization step: 2528. Total energy = 7425.2983 kcal/mol (7420.6249 without restraints) Performing minimization step: 2529. Total energy = 7423.0154 kcal/mol (7418.3435 without restraints) Performing minimization step: 2530. Total energy = 7420.7340 kcal/mol (7416.0632 without restraints) Performing minimization step: 2531. Total energy = 7418.4533 kcal/mol (7413.7838 without restraints) Performing minimization step: 2532. Total energy = 7416.1738 kcal/mol (7411.5056 without restraints) Performing minimization step: 2533. Total energy = 7413.8956 kcal/mol (7409.2288 without restraints) Performing minimization step: 2534. Total energy = 7411.6186 kcal/mol (7406.9531 without restraints) Performing minimization step: 2535. Total energy = 7409.3427 kcal/mol (7404.6785 without restraints) Performing minimization step: 2536. Total energy = 7407.0681 kcal/mol (7402.4053 without restraints) Performing minimization step: 2537. Total energy = 7404.7944 kcal/mol (7400.1328 without restraints) Performing minimization step: 2538. Total energy = 7402.5221 kcal/mol (7397.8618 without restraints) Performing minimization step: 2539. Total energy = 7400.2513 kcal/mol (7395.5923 without restraints) Performing minimization step: 2540. Total energy = 7397.9817 kcal/mol (7393.3240 without restraints) Performing minimization step: 2541. Total energy = 7395.7131 kcal/mol (7391.0567 without restraints) Performing minimization step: 2542. Total energy = 7393.4459 kcal/mol (7388.7909 without restraints) Performing minimization step: 2543. Total energy = 7391.1800 kcal/mol (7386.5262 without restraints) Performing minimization step: 2544. Total energy = 7388.9152 kcal/mol (7384.2628 without restraints) Performing minimization step: 2545. Total energy = 7386.6515 kcal/mol (7382.0004 without restraints) Performing minimization step: 2546. Total energy = 7384.3892 kcal/mol (7379.7395 without restraints) Performing minimization step: 2547. Total energy = 7382.1277 kcal/mol (7377.4792 without restraints) Performing minimization step: 2548. Total energy = 7379.8675 kcal/mol (7375.2204 without restraints) Performing minimization step: 2549. Total energy = 7377.6090 kcal/mol (7372.9633 without restraints) Performing minimization step: 2550. Total energy = 7375.3515 kcal/mol (7370.7070 without restraints) Performing minimization step: 2551. Total energy = 7373.0951 kcal/mol (7368.4517 without restraints) Performing minimization step: 2552. Total energy = 7370.8400 kcal/mol (7366.1980 without restraints) Performing minimization step: 2553. Total energy = 7368.5862 kcal/mol (7363.9457 without restraints) Performing minimization step: 2554. Total energy = 7366.3337 kcal/mol (7361.6945 without restraints) Performing minimization step: 2555. Total energy = 7364.0824 kcal/mol (7359.4444 without restraints) Performing minimization step: 2556. Total energy = 7361.8322 kcal/mol (7357.1954 without restraints) Performing minimization step: 2557. Total energy = 7359.5833 kcal/mol (7354.9480 without restraints) Performing minimization step: 2558. Total energy = 7357.3362 kcal/mol (7352.7023 without restraints) Performing minimization step: 2559. Total energy = 7355.0901 kcal/mol (7350.4573 without restraints) Performing minimization step: 2560. Total energy = 7352.8448 kcal/mol (7348.2133 without restraints) Performing minimization step: 2561. Total energy = 7350.6014 kcal/mol (7345.9711 without restraints) Performing minimization step: 2562. Total energy = 7348.3583 kcal/mol (7343.7294 without restraints) Performing minimization step: 2563. Total energy = 7346.1168 kcal/mol (7341.4891 without restraints) Performing minimization step: 2564. Total energy = 7343.8763 kcal/mol (7339.2500 without restraints) Performing minimization step: 2565. Total energy = 7341.6373 kcal/mol (7337.0122 without restraints) Performing minimization step: 2566. Total energy = 7339.3996 kcal/mol (7334.7759 without restraints) Performing minimization step: 2567. Total energy = 7337.1633 kcal/mol (7332.5411 without restraints) Performing minimization step: 2568. Total energy = 7334.9282 kcal/mol (7330.3071 without restraints) Performing minimization step: 2569. Total energy = 7332.6942 kcal/mol (7328.0744 without restraints) Performing minimization step: 2570. Total energy = 7330.4612 kcal/mol (7325.8427 without restraints) Performing minimization step: 2571. Total energy = 7328.2297 kcal/mol (7323.6125 without restraints) Performing minimization step: 2572. Total energy = 7325.9995 kcal/mol (7321.3836 without restraints) Performing minimization step: 2573. Total energy = 7323.7703 kcal/mol (7319.1557 without restraints) Performing minimization step: 2574. Total energy = 7321.5430 kcal/mol (7316.9298 without restraints) Performing minimization step: 2575. Total energy = 7319.3166 kcal/mol (7314.7046 without restraints) Performing minimization step: 2576. Total energy = 7317.0914 kcal/mol (7312.4807 without restraints) Performing minimization step: 2577. Total energy = 7314.8671 kcal/mol (7310.2577 without restraints) Performing minimization step: 2578. Total energy = 7312.6449 kcal/mol (7308.0368 without restraints) Performing minimization step: 2579. Total energy = 7310.4237 kcal/mol (7305.8169 without restraints) Performing minimization step: 2580. Total energy = 7308.2037 kcal/mol (7303.5982 without restraints) Performing minimization step: 2581. Total energy = 7305.9855 kcal/mol (7301.3813 without restraints) Performing minimization step: 2582. Total energy = 7303.7680 kcal/mol (7299.1650 without restraints) Performing minimization step: 2583. Total energy = 7301.5521 kcal/mol (7296.9504 without restraints) Performing minimization step: 2584. Total energy = 7299.3372 kcal/mol (7294.7369 without restraints) Performing minimization step: 2585. Total energy = 7297.1237 kcal/mol (7292.5247 without restraints) Performing minimization step: 2586. Total energy = 7294.9114 kcal/mol (7290.3137 without restraints) Performing minimization step: 2587. Total energy = 7292.7006 kcal/mol (7288.1043 without restraints) Performing minimization step: 2588. Total energy = 7290.4909 kcal/mol (7285.8957 without restraints) Performing minimization step: 2589. Total energy = 7288.2826 kcal/mol (7283.6889 without restraints) Performing minimization step: 2590. Total energy = 7286.0755 kcal/mol (7281.4829 without restraints) Performing minimization step: 2591. Total energy = 7283.8695 kcal/mol (7279.2782 without restraints) Performing minimization step: 2592. Total energy = 7281.6649 kcal/mol (7277.0749 without restraints) Performing minimization step: 2593. Total energy = 7279.4617 kcal/mol (7274.8730 without restraints) Performing minimization step: 2594. Total energy = 7277.2601 kcal/mol (7272.6727 without restraints) Performing minimization step: 2595. Total energy = 7275.0599 kcal/mol (7270.4738 without restraints) Performing minimization step: 2596. Total energy = 7272.8607 kcal/mol (7268.2759 without restraints) Performing minimization step: 2597. Total energy = 7270.6629 kcal/mol (7266.0795 without restraints) Performing minimization step: 2598. Total energy = 7268.4662 kcal/mol (7263.8839 without restraints) Performing minimization step: 2599. Total energy = 7266.2705 kcal/mol (7261.6896 without restraints) Performing minimization step: 2600. Total energy = 7264.0764 kcal/mol (7259.4968 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 7261.8836 kcal/mol (7257.3052 without restraints) Performing minimization step: 2602. Total energy = 7259.6924 kcal/mol (7255.1154 without restraints) Performing minimization step: 2603. Total energy = 7257.5023 kcal/mol (7252.9265 without restraints) Performing minimization step: 2604. Total energy = 7255.3133 kcal/mol (7250.7388 without restraints) Performing minimization step: 2605. Total energy = 7253.1257 kcal/mol (7248.5525 without restraints) Performing minimization step: 2606. Total energy = 7250.9395 kcal/mol (7246.3678 without restraints) Performing minimization step: 2607. Total energy = 7248.7547 kcal/mol (7244.1841 without restraints) Performing minimization step: 2608. Total energy = 7246.5705 kcal/mol (7242.0012 without restraints) Performing minimization step: 2609. Total energy = 7244.3881 kcal/mol (7239.8201 without restraints) Performing minimization step: 2610. Total energy = 7242.2070 kcal/mol (7237.6402 without restraints) Performing minimization step: 2611. Total energy = 7240.0272 kcal/mol (7235.4617 without restraints) Performing minimization step: 2612. Total energy = 7237.8488 kcal/mol (7233.2848 without restraints) Performing minimization step: 2613. Total energy = 7235.6715 kcal/mol (7231.1086 without restraints) Performing minimization step: 2614. Total energy = 7233.4961 kcal/mol (7228.9345 without restraints) Performing minimization step: 2615. Total energy = 7231.3215 kcal/mol (7226.7612 without restraints) Performing minimization step: 2616. Total energy = 7229.1483 kcal/mol (7224.5893 without restraints) Performing minimization step: 2617. Total energy = 7226.9770 kcal/mol (7222.4192 without restraints) Performing minimization step: 2618. Total energy = 7224.8065 kcal/mol (7220.2501 without restraints) Performing minimization step: 2619. Total energy = 7222.6373 kcal/mol (7218.0822 without restraints) Performing minimization step: 2620. Total energy = 7220.4697 kcal/mol (7215.9161 without restraints) Performing minimization step: 2621. Total energy = 7218.3038 kcal/mol (7213.7512 without restraints) Performing minimization step: 2622. Total energy = 7216.1385 kcal/mol (7211.5872 without restraints) Performing minimization step: 2623. Total energy = 7213.9747 kcal/mol (7209.4247 without restraints) Performing minimization step: 2624. Total energy = 7211.8123 kcal/mol (7207.2635 without restraints) Performing minimization step: 2625. Total energy = 7209.6513 kcal/mol (7205.1040 without restraints) Performing minimization step: 2626. Total energy = 7207.4917 kcal/mol (7202.9456 without restraints) Performing minimization step: 2627. Total energy = 7205.3332 kcal/mol (7200.7883 without restraints) Performing minimization step: 2628. Total energy = 7203.1765 kcal/mol (7198.6331 without restraints) Performing minimization step: 2629. Total energy = 7201.0213 kcal/mol (7196.4790 without restraints) Performing minimization step: 2630. Total energy = 7198.8671 kcal/mol (7194.3261 without restraints) Performing minimization step: 2631. Total energy = 7196.7143 kcal/mol (7192.1748 without restraints) Performing minimization step: 2632. Total energy = 7194.5632 kcal/mol (7190.0247 without restraints) Performing minimization step: 2633. Total energy = 7192.4133 kcal/mol (7187.8761 without restraints) Performing minimization step: 2634. Total energy = 7190.2644 kcal/mol (7185.7285 without restraints) Performing minimization step: 2635. Total energy = 7188.1169 kcal/mol (7183.5823 without restraints) Performing minimization step: 2636. Total energy = 7185.9709 kcal/mol (7181.4377 without restraints) Performing minimization step: 2637. Total energy = 7183.8264 kcal/mol (7179.2943 without restraints) Performing minimization step: 2638. Total energy = 7181.6832 kcal/mol (7177.1524 without restraints) Performing minimization step: 2639. Total energy = 7179.5412 kcal/mol (7175.0117 without restraints) Performing minimization step: 2640. Total energy = 7177.4003 kcal/mol (7172.8721 without restraints) Performing minimization step: 2641. Total energy = 7175.2611 kcal/mol (7170.7342 without restraints) Performing minimization step: 2642. Total energy = 7173.1234 kcal/mol (7168.5978 without restraints) Performing minimization step: 2643. Total energy = 7170.9869 kcal/mol (7166.4626 without restraints) Performing minimization step: 2644. Total energy = 7168.8516 kcal/mol (7164.3285 without restraints) Performing minimization step: 2645. Total energy = 7166.7182 kcal/mol (7162.1964 without restraints) Performing minimization step: 2646. Total energy = 7164.5858 kcal/mol (7160.0653 without restraints) Performing minimization step: 2647. Total energy = 7162.4549 kcal/mol (7157.9357 without restraints) Performing minimization step: 2648. Total energy = 7160.3255 kcal/mol (7155.8075 without restraints) Performing minimization step: 2649. Total energy = 7158.1973 kcal/mol (7153.6806 without restraints) Performing minimization step: 2650. Total energy = 7156.0705 kcal/mol (7151.5552 without restraints) Performing minimization step: 2651. Total energy = 7153.9454 kcal/mol (7149.4313 without restraints) Performing minimization step: 2652. Total energy = 7151.8216 kcal/mol (7147.3088 without restraints) Performing minimization step: 2653. Total energy = 7149.6988 kcal/mol (7145.1873 without restraints) Performing minimization step: 2654. Total energy = 7147.5777 kcal/mol (7143.0674 without restraints) Performing minimization step: 2655. Total energy = 7145.4582 kcal/mol (7140.9494 without restraints) Performing minimization step: 2656. Total energy = 7143.3399 kcal/mol (7138.8322 without restraints) Performing minimization step: 2657. Total energy = 7141.2229 kcal/mol (7136.7165 without restraints) Performing minimization step: 2658. Total energy = 7139.1073 kcal/mol (7134.6021 without restraints) Performing minimization step: 2659. Total energy = 7136.9933 kcal/mol (7132.4894 without restraints) Performing minimization step: 2660. Total energy = 7134.8806 kcal/mol (7130.3779 without restraints) Performing minimization step: 2661. Total energy = 7132.7689 kcal/mol (7128.2676 without restraints) Performing minimization step: 2662. Total energy = 7130.6592 kcal/mol (7126.1592 without restraints) Performing minimization step: 2663. Total energy = 7128.5507 kcal/mol (7124.0519 without restraints) Performing minimization step: 2664. Total energy = 7126.4438 kcal/mol (7121.9463 without restraints) Performing minimization step: 2665. Total energy = 7124.3382 kcal/mol (7119.8420 without restraints) Performing minimization step: 2666. Total energy = 7122.2336 kcal/mol (7117.7388 without restraints) Performing minimization step: 2667. Total energy = 7120.1310 kcal/mol (7115.6375 without restraints) Performing minimization step: 2668. Total energy = 7118.0296 kcal/mol (7113.5373 without restraints) Performing minimization step: 2669. Total energy = 7115.9294 kcal/mol (7111.4382 without restraints) Performing minimization step: 2670. Total energy = 7113.8309 kcal/mol (7109.3411 without restraints) Performing minimization step: 2671. Total energy = 7111.7337 kcal/mol (7107.2451 without restraints) Performing minimization step: 2672. Total energy = 7109.6379 kcal/mol (7105.1506 without restraints) Performing minimization step: 2673. Total energy = 7107.5435 kcal/mol (7103.0575 without restraints) Performing minimization step: 2674. Total energy = 7105.4507 kcal/mol (7100.9659 without restraints) Performing minimization step: 2675. Total energy = 7103.3591 kcal/mol (7098.8757 without restraints) Performing minimization step: 2676. Total energy = 7101.2690 kcal/mol (7096.7868 without restraints) Performing minimization step: 2677. Total energy = 7099.1802 kcal/mol (7094.6994 without restraints) Performing minimization step: 2678. Total energy = 7097.0927 kcal/mol (7092.6130 without restraints) Performing minimization step: 2679. Total energy = 7095.0070 kcal/mol (7090.5286 without restraints) Performing minimization step: 2680. Total energy = 7092.9227 kcal/mol (7088.4456 without restraints) Performing minimization step: 2681. Total energy = 7090.8399 kcal/mol (7086.3641 without restraints) Performing minimization step: 2682. Total energy = 7088.7584 kcal/mol (7084.2839 without restraints) Performing minimization step: 2683. Total energy = 7086.6783 kcal/mol (7082.2050 without restraints) Performing minimization step: 2684. Total energy = 7084.5999 kcal/mol (7080.1279 without restraints) Performing minimization step: 2685. Total energy = 7082.5231 kcal/mol (7078.0524 without restraints) Performing minimization step: 2686. Total energy = 7080.4475 kcal/mol (7075.9781 without restraints) Performing minimization step: 2687. Total energy = 7078.3738 kcal/mol (7073.9054 without restraints) Performing minimization step: 2688. Total energy = 7076.3009 kcal/mol (7071.8340 without restraints) Performing minimization step: 2689. Total energy = 7074.2296 kcal/mol (7069.7639 without restraints) Performing minimization step: 2690. Total energy = 7072.1597 kcal/mol (7067.6954 without restraints) Performing minimization step: 2691. Total energy = 7070.0912 kcal/mol (7065.6282 without restraints) Performing minimization step: 2692. Total energy = 7068.0243 kcal/mol (7063.5625 without restraints) Performing minimization step: 2693. Total energy = 7065.9590 kcal/mol (7061.4985 without restraints) Performing minimization step: 2694. Total energy = 7063.8953 kcal/mol (7059.4361 without restraints) Performing minimization step: 2695. Total energy = 7061.8331 kcal/mol (7057.3751 without restraints) Performing minimization step: 2696. Total energy = 7059.7721 kcal/mol (7055.3155 without restraints) Performing minimization step: 2697. Total energy = 7057.7129 kcal/mol (7053.2574 without restraints) Performing minimization step: 2698. Total energy = 7055.6547 kcal/mol (7051.2005 without restraints) Performing minimization step: 2699. Total energy = 7053.5979 kcal/mol (7049.1450 without restraints) Performing minimization step: 2700. Total energy = 7051.5425 kcal/mol (7047.0908 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 7049.4885 kcal/mol (7045.0381 without restraints) Performing minimization step: 2702. Total energy = 7047.4362 kcal/mol (7042.9871 without restraints) Performing minimization step: 2703. Total energy = 7045.3853 kcal/mol (7040.9376 without restraints) Performing minimization step: 2704. Total energy = 7043.3361 kcal/mol (7038.8895 without restraints) Performing minimization step: 2705. Total energy = 7041.2878 kcal/mol (7036.8425 without restraints) Performing minimization step: 2706. Total energy = 7039.2414 kcal/mol (7034.7974 without restraints) Performing minimization step: 2707. Total energy = 7037.1967 kcal/mol (7032.7539 without restraints) Performing minimization step: 2708. Total energy = 7035.1532 kcal/mol (7030.7117 without restraints) Performing minimization step: 2709. Total energy = 7033.1115 kcal/mol (7028.6712 without restraints) Performing minimization step: 2710. Total energy = 7031.0715 kcal/mol (7026.6325 without restraints) Performing minimization step: 2711. Total energy = 7029.0327 kcal/mol (7024.5950 without restraints) Performing minimization step: 2712. Total energy = 7026.9952 kcal/mol (7022.5587 without restraints) Performing minimization step: 2713. Total energy = 7024.9589 kcal/mol (7020.5237 without restraints) Performing minimization step: 2714. Total energy = 7022.9242 kcal/mol (7018.4903 without restraints) Performing minimization step: 2715. Total energy = 7020.8912 kcal/mol (7016.4586 without restraints) Performing minimization step: 2716. Total energy = 7018.8597 kcal/mol (7014.4284 without restraints) Performing minimization step: 2717. Total energy = 7016.8297 kcal/mol (7012.3996 without restraints) Performing minimization step: 2718. Total energy = 7014.8012 kcal/mol (7010.3725 without restraints) Performing minimization step: 2719. Total energy = 7012.7736 kcal/mol (7008.3461 without restraints) Performing minimization step: 2720. Total energy = 7010.7479 kcal/mol (7006.3216 without restraints) Performing minimization step: 2721. Total energy = 7008.7241 kcal/mol (7004.2990 without restraints) Performing minimization step: 2722. Total energy = 7006.7015 kcal/mol (7002.2777 without restraints) Performing minimization step: 2723. Total energy = 7004.6800 kcal/mol (7000.2575 without restraints) Performing minimization step: 2724. Total energy = 7002.6604 kcal/mol (6998.2392 without restraints) Performing minimization step: 2725. Total energy = 7000.6426 kcal/mol (6996.2226 without restraints) Performing minimization step: 2726. Total energy = 6998.6263 kcal/mol (6994.2076 without restraints) Performing minimization step: 2727. Total energy = 6996.6115 kcal/mol (6992.1941 without restraints) Performing minimization step: 2728. Total energy = 6994.5982 kcal/mol (6990.1820 without restraints) Performing minimization step: 2729. Total energy = 6992.5862 kcal/mol (6988.1713 without restraints) Performing minimization step: 2730. Total energy = 6990.5763 kcal/mol (6986.1626 without restraints) Performing minimization step: 2731. Total energy = 6988.5673 kcal/mol (6984.1548 without restraints) Performing minimization step: 2732. Total energy = 6986.5598 kcal/mol (6982.1487 without restraints) Performing minimization step: 2733. Total energy = 6984.5536 kcal/mol (6980.1436 without restraints) Performing minimization step: 2734. Total energy = 6982.5490 kcal/mol (6978.1405 without restraints) Performing minimization step: 2735. Total energy = 6980.5461 kcal/mol (6976.1388 without restraints) Performing minimization step: 2736. Total energy = 6978.5447 kcal/mol (6974.1386 without restraints) Performing minimization step: 2737. Total energy = 6976.5443 kcal/mol (6972.1395 without restraints) Performing minimization step: 2738. Total energy = 6974.5461 kcal/mol (6970.1425 without restraints) Performing minimization step: 2739. Total energy = 6972.5492 kcal/mol (6968.1469 without restraints) Performing minimization step: 2740. Total energy = 6970.5536 kcal/mol (6966.1526 without restraints) Performing minimization step: 2741. Total energy = 6968.5595 kcal/mol (6964.1598 without restraints) Performing minimization step: 2742. Total energy = 6966.5673 kcal/mol (6962.1688 without restraints) Performing minimization step: 2743. Total energy = 6964.5765 kcal/mol (6960.1792 without restraints) Performing minimization step: 2744. Total energy = 6962.5874 kcal/mol (6958.1914 without restraints) Performing minimization step: 2745. Total energy = 6960.5996 kcal/mol (6956.2049 without restraints) Performing minimization step: 2746. Total energy = 6958.6137 kcal/mol (6954.2203 without restraints) Performing minimization step: 2747. Total energy = 6956.6292 kcal/mol (6952.2370 without restraints) Performing minimization step: 2748. Total energy = 6954.6460 kcal/mol (6950.2551 without restraints) Performing minimization step: 2749. Total energy = 6952.6643 kcal/mol (6948.2746 without restraints) Performing minimization step: 2750. Total energy = 6950.6841 kcal/mol (6946.2957 without restraints) Performing minimization step: 2751. Total energy = 6948.7054 kcal/mol (6944.3183 without restraints) Performing minimization step: 2752. Total energy = 6946.7288 kcal/mol (6942.3430 without restraints) Performing minimization step: 2753. Total energy = 6944.7534 kcal/mol (6940.3688 without restraints) Performing minimization step: 2754. Total energy = 6942.7793 kcal/mol (6938.3960 without restraints) Performing minimization step: 2755. Total energy = 6940.8071 kcal/mol (6936.4250 without restraints) Performing minimization step: 2756. Total energy = 6938.8361 kcal/mol (6934.4552 without restraints) Performing minimization step: 2757. Total energy = 6936.8666 kcal/mol (6932.4869 without restraints) Performing minimization step: 2758. Total energy = 6934.8989 kcal/mol (6930.5206 without restraints) Performing minimization step: 2759. Total energy = 6932.9327 kcal/mol (6928.5557 without restraints) Performing minimization step: 2760. Total energy = 6930.9681 kcal/mol (6926.5923 without restraints) Performing minimization step: 2761. Total energy = 6929.0049 kcal/mol (6924.6303 without restraints) Performing minimization step: 2762. Total energy = 6927.0431 kcal/mol (6922.6698 without restraints) Performing minimization step: 2763. Total energy = 6925.0828 kcal/mol (6920.7108 without restraints) Performing minimization step: 2764. Total energy = 6923.1243 kcal/mol (6918.7536 without restraints) Performing minimization step: 2765. Total energy = 6921.1673 kcal/mol (6916.7978 without restraints) Performing minimization step: 2766. Total energy = 6919.2118 kcal/mol (6914.8436 without restraints) Performing minimization step: 2767. Total energy = 6917.2577 kcal/mol (6912.8906 without restraints) Performing minimization step: 2768. Total energy = 6915.3051 kcal/mol (6910.9394 without restraints) Performing minimization step: 2769. Total energy = 6913.3542 kcal/mol (6908.9897 without restraints) Performing minimization step: 2770. Total energy = 6911.4051 kcal/mol (6907.0418 without restraints) Performing minimization step: 2771. Total energy = 6909.4574 kcal/mol (6905.0955 without restraints) Performing minimization step: 2772. Total energy = 6907.5113 kcal/mol (6903.1506 without restraints) Performing minimization step: 2773. Total energy = 6905.5668 kcal/mol (6901.2074 without restraints) Performing minimization step: 2774. Total energy = 6903.6237 kcal/mol (6899.2655 without restraints) Performing minimization step: 2775. Total energy = 6901.6821 kcal/mol (6897.3252 without restraints) Performing minimization step: 2776. Total energy = 6899.7420 kcal/mol (6895.3864 without restraints) Performing minimization step: 2777. Total energy = 6897.8036 kcal/mol (6893.4492 without restraints) Performing minimization step: 2778. Total energy = 6895.8663 kcal/mol (6891.5131 without restraints) Performing minimization step: 2779. Total energy = 6893.9312 kcal/mol (6889.5793 without restraints) Performing minimization step: 2780. Total energy = 6891.9973 kcal/mol (6887.6466 without restraints) Performing minimization step: 2781. Total energy = 6890.0650 kcal/mol (6885.7156 without restraints) Performing minimization step: 2782. Total energy = 6888.1345 kcal/mol (6883.7863 without restraints) Performing minimization step: 2783. Total energy = 6886.2052 kcal/mol (6881.8585 without restraints) Performing minimization step: 2784. Total energy = 6884.2781 kcal/mol (6879.9325 without restraints) Performing minimization step: 2785. Total energy = 6882.3523 kcal/mol (6878.0082 without restraints) Performing minimization step: 2786. Total energy = 6880.4281 kcal/mol (6876.0849 without restraints) Performing minimization step: 2787. Total energy = 6878.5053 kcal/mol (6874.1635 without restraints) Performing minimization step: 2788. Total energy = 6876.5839 kcal/mol (6872.2433 without restraints) Performing minimization step: 2789. Total energy = 6874.6643 kcal/mol (6870.3249 without restraints) Performing minimization step: 2790. Total energy = 6872.7460 kcal/mol (6868.4079 without restraints) Performing minimization step: 2791. Total energy = 6870.8297 kcal/mol (6866.4929 without restraints) Performing minimization step: 2792. Total energy = 6868.9145 kcal/mol (6864.5789 without restraints) Performing minimization step: 2793. Total energy = 6867.0009 kcal/mol (6862.6666 without restraints) Performing minimization step: 2794. Total energy = 6865.0888 kcal/mol (6860.7557 without restraints) Performing minimization step: 2795. Total energy = 6863.1781 kcal/mol (6858.8463 without restraints) Performing minimization step: 2796. Total energy = 6861.2690 kcal/mol (6856.9384 without restraints) Performing minimization step: 2797. Total energy = 6859.3619 kcal/mol (6855.0326 without restraints) Performing minimization step: 2798. Total energy = 6857.4561 kcal/mol (6853.1280 without restraints) Performing minimization step: 2799. Total energy = 6855.5518 kcal/mol (6851.2249 without restraints) Performing minimization step: 2800. Total energy = 6853.6493 kcal/mol (6849.3237 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 6851.7485 kcal/mol (6847.4242 without restraints) Performing minimization step: 2802. Total energy = 6849.8491 kcal/mol (6845.5260 without restraints) Performing minimization step: 2803. Total energy = 6847.9509 kcal/mol (6843.6290 without restraints) Performing minimization step: 2804. Total energy = 6846.0549 kcal/mol (6841.7343 without restraints) Performing minimization step: 2805. Total energy = 6844.1598 kcal/mol (6839.8404 without restraints) Performing minimization step: 2806. Total energy = 6842.2665 kcal/mol (6837.9484 without restraints) Performing minimization step: 2807. Total energy = 6840.3752 kcal/mol (6836.0583 without restraints) Performing minimization step: 2808. Total energy = 6838.4851 kcal/mol (6834.1695 without restraints) Performing minimization step: 2809. Total energy = 6836.5964 kcal/mol (6832.2821 without restraints) Performing minimization step: 2810. Total energy = 6834.7093 kcal/mol (6830.3963 without restraints) Performing minimization step: 2811. Total energy = 6832.8239 kcal/mol (6828.5121 without restraints) Performing minimization step: 2812. Total energy = 6830.9404 kcal/mol (6826.6298 without restraints) Performing minimization step: 2813. Total energy = 6829.0580 kcal/mol (6824.7487 without restraints) Performing minimization step: 2814. Total energy = 6827.1771 kcal/mol (6822.8690 without restraints) Performing minimization step: 2815. Total energy = 6825.2979 kcal/mol (6820.9911 without restraints) Performing minimization step: 2816. Total energy = 6823.4203 kcal/mol (6819.1148 without restraints) Performing minimization step: 2817. Total energy = 6821.5446 kcal/mol (6817.2405 without restraints) Performing minimization step: 2818. Total energy = 6819.6703 kcal/mol (6815.3673 without restraints) Performing minimization step: 2819. Total energy = 6817.7974 kcal/mol (6813.4955 without restraints) Performing minimization step: 2820. Total energy = 6815.9262 kcal/mol (6811.6255 without restraints) Performing minimization step: 2821. Total energy = 6814.0567 kcal/mol (6809.7574 without restraints) Performing minimization step: 2822. Total energy = 6812.1885 kcal/mol (6807.8904 without restraints) Performing minimization step: 2823. Total energy = 6810.3220 kcal/mol (6806.0252 without restraints) Performing minimization step: 2824. Total energy = 6808.4573 kcal/mol (6804.1617 without restraints) Performing minimization step: 2825. Total energy = 6806.5935 kcal/mol (6802.2990 without restraints) Performing minimization step: 2826. Total energy = 6804.7318 kcal/mol (6800.4388 without restraints) Performing minimization step: 2827. Total energy = 6802.8717 kcal/mol (6798.5799 without restraints) Performing minimization step: 2828. Total energy = 6801.0132 kcal/mol (6796.7225 without restraints) Performing minimization step: 2829. Total energy = 6799.1559 kcal/mol (6794.8665 without restraints) Performing minimization step: 2830. Total energy = 6797.3003 kcal/mol (6793.0122 without restraints) Performing minimization step: 2831. Total energy = 6795.4464 kcal/mol (6791.1595 without restraints) Performing minimization step: 2832. Total energy = 6793.5939 kcal/mol (6789.3082 without restraints) Performing minimization step: 2833. Total energy = 6791.7431 kcal/mol (6787.4586 without restraints) Performing minimization step: 2834. Total energy = 6789.8936 kcal/mol (6785.6105 without restraints) Performing minimization step: 2835. Total energy = 6788.0459 kcal/mol (6783.7640 without restraints) Performing minimization step: 2836. Total energy = 6786.1997 kcal/mol (6781.9190 without restraints) Performing minimization step: 2837. Total energy = 6784.3552 kcal/mol (6780.0758 without restraints) Performing minimization step: 2838. Total energy = 6782.5122 kcal/mol (6778.2340 without restraints) Performing minimization step: 2839. Total energy = 6780.6702 kcal/mol (6776.3932 without restraints) Performing minimization step: 2840. Total energy = 6778.8302 kcal/mol (6774.5545 without restraints) Performing minimization step: 2841. Total energy = 6776.9918 kcal/mol (6772.7174 without restraints) Performing minimization step: 2842. Total energy = 6775.1548 kcal/mol (6770.8816 without restraints) Performing minimization step: 2843. Total energy = 6773.3192 kcal/mol (6769.0472 without restraints) Performing minimization step: 2844. Total energy = 6771.4857 kcal/mol (6767.2149 without restraints) Performing minimization step: 2845. Total energy = 6769.6538 kcal/mol (6765.3843 without restraints) Performing minimization step: 2846. Total energy = 6767.8232 kcal/mol (6763.5550 without restraints) Performing minimization step: 2847. Total energy = 6765.9945 kcal/mol (6761.7274 without restraints) Performing minimization step: 2848. Total energy = 6764.1678 kcal/mol (6759.9021 without restraints) Performing minimization step: 2849. Total energy = 6762.3424 kcal/mol (6758.0779 without restraints) Performing minimization step: 2850. Total energy = 6760.5184 kcal/mol (6756.2551 without restraints) Performing minimization step: 2851. Total energy = 6758.6962 kcal/mol (6754.4341 without restraints) Performing minimization step: 2852. Total energy = 6756.8751 kcal/mol (6752.6143 without restraints) Performing minimization step: 2853. Total energy = 6755.0555 kcal/mol (6750.7960 without restraints) Performing minimization step: 2854. Total energy = 6753.2374 kcal/mol (6748.9790 without restraints) Performing minimization step: 2855. Total energy = 6751.4208 kcal/mol (6747.1637 without restraints) Performing minimization step: 2856. Total energy = 6749.6060 kcal/mol (6745.3502 without restraints) Performing minimization step: 2857. Total energy = 6747.7926 kcal/mol (6743.5379 without restraints) Performing minimization step: 2858. Total energy = 6745.9809 kcal/mol (6741.7275 without restraints) Performing minimization step: 2859. Total energy = 6744.1712 kcal/mol (6739.9192 without restraints) Performing minimization step: 2860. Total energy = 6742.3628 kcal/mol (6738.1119 without restraints) Performing minimization step: 2861. Total energy = 6740.5563 kcal/mol (6736.3066 without restraints) Performing minimization step: 2862. Total energy = 6738.7509 kcal/mol (6734.5024 without restraints) Performing minimization step: 2863. Total energy = 6736.9470 kcal/mol (6732.6997 without restraints) Performing minimization step: 2864. Total energy = 6735.1448 kcal/mol (6730.8989 without restraints) Performing minimization step: 2865. Total energy = 6733.3445 kcal/mol (6729.0997 without restraints) Performing minimization step: 2866. Total energy = 6731.5453 kcal/mol (6727.3018 without restraints) Performing minimization step: 2867. Total energy = 6729.7479 kcal/mol (6725.5057 without restraints) Performing minimization step: 2868. Total energy = 6727.9519 kcal/mol (6723.7110 without restraints) Performing minimization step: 2869. Total energy = 6726.1580 kcal/mol (6721.9182 without restraints) Performing minimization step: 2870. Total energy = 6724.3654 kcal/mol (6720.1268 without restraints) Performing minimization step: 2871. Total energy = 6722.5741 kcal/mol (6718.3368 without restraints) Performing minimization step: 2872. Total energy = 6720.7846 kcal/mol (6716.5485 without restraints) Performing minimization step: 2873. Total energy = 6718.9964 kcal/mol (6714.7616 without restraints) Performing minimization step: 2874. Total energy = 6717.2100 kcal/mol (6712.9764 without restraints) Performing minimization step: 2875. Total energy = 6715.4252 kcal/mol (6711.1928 without restraints) Performing minimization step: 2876. Total energy = 6713.6418 kcal/mol (6709.4106 without restraints) Performing minimization step: 2877. Total energy = 6711.8602 kcal/mol (6707.6305 without restraints) Performing minimization step: 2878. Total energy = 6710.0801 kcal/mol (6705.8514 without restraints) Performing minimization step: 2879. Total energy = 6708.3015 kcal/mol (6704.0741 without restraints) Performing minimization step: 2880. Total energy = 6706.5241 kcal/mol (6702.2979 without restraints) Performing minimization step: 2881. Total energy = 6704.7485 kcal/mol (6700.5235 without restraints) Performing minimization step: 2882. Total energy = 6702.9744 kcal/mol (6698.7506 without restraints) Performing minimization step: 2883. Total energy = 6701.2021 kcal/mol (6696.9795 without restraints) Performing minimization step: 2884. Total energy = 6699.4310 kcal/mol (6695.2097 without restraints) Performing minimization step: 2885. Total energy = 6697.6617 kcal/mol (6693.4415 without restraints) Performing minimization step: 2886. Total energy = 6695.8937 kcal/mol (6691.6748 without restraints) Performing minimization step: 2887. Total energy = 6694.1274 kcal/mol (6689.9098 without restraints) Performing minimization step: 2888. Total energy = 6692.3627 kcal/mol (6688.1463 without restraints) Performing minimization step: 2889. Total energy = 6690.5998 kcal/mol (6686.3847 without restraints) Performing minimization step: 2890. Total energy = 6688.8382 kcal/mol (6684.6243 without restraints) Performing minimization step: 2891. Total energy = 6687.0786 kcal/mol (6682.8660 without restraints) Performing minimization step: 2892. Total energy = 6685.3201 kcal/mol (6681.1087 without restraints) Performing minimization step: 2893. Total energy = 6683.5633 kcal/mol (6679.3529 without restraints) Performing minimization step: 2894. Total energy = 6681.8076 kcal/mol (6677.5986 without restraints) Performing minimization step: 2895. Total energy = 6680.0535 kcal/mol (6675.8457 without restraints) Performing minimization step: 2896. Total energy = 6678.3012 kcal/mol (6674.0947 without restraints) Performing minimization step: 2897. Total energy = 6676.5504 kcal/mol (6672.3450 without restraints) Performing minimization step: 2898. Total energy = 6674.8010 kcal/mol (6670.5968 without restraints) Performing minimization step: 2899. Total energy = 6673.0541 kcal/mol (6668.8514 without restraints) Performing minimization step: 2900. Total energy = 6671.3085 kcal/mol (6667.1069 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 6669.5635 kcal/mol (6665.3631 without restraints) Performing minimization step: 2902. Total energy = 6667.8206 kcal/mol (6663.6214 without restraints) Performing minimization step: 2903. Total energy = 6666.0795 kcal/mol (6661.8815 without restraints) Performing minimization step: 2904. Total energy = 6664.3396 kcal/mol (6660.1428 without restraints) Performing minimization step: 2905. Total energy = 6662.6013 kcal/mol (6658.4058 without restraints) Performing minimization step: 2906. Total energy = 6660.8648 kcal/mol (6656.6705 without restraints) Performing minimization step: 2907. Total energy = 6659.1295 kcal/mol (6654.9363 without restraints) Performing minimization step: 2908. Total energy = 6657.3957 kcal/mol (6653.2039 without restraints) Performing minimization step: 2909. Total energy = 6655.6638 kcal/mol (6651.4734 without restraints) Performing minimization step: 2910. Total energy = 6653.9336 kcal/mol (6649.7442 without restraints) Performing minimization step: 2911. Total energy = 6652.2045 kcal/mol (6648.0164 without restraints) Performing minimization step: 2912. Total energy = 6650.4775 kcal/mol (6646.2905 without restraints) Performing minimization step: 2913. Total energy = 6648.7511 kcal/mol (6644.5654 without restraints) Performing minimization step: 2914. Total energy = 6647.0267 kcal/mol (6642.8422 without restraints) Performing minimization step: 2915. Total energy = 6645.3041 kcal/mol (6641.1208 without restraints) Performing minimization step: 2916. Total energy = 6643.5829 kcal/mol (6639.4008 without restraints) Performing minimization step: 2917. Total energy = 6641.8630 kcal/mol (6637.6822 without restraints) Performing minimization step: 2918. Total energy = 6640.1448 kcal/mol (6635.9652 without restraints) Performing minimization step: 2919. Total energy = 6638.4283 kcal/mol (6634.2500 without restraints) Performing minimization step: 2920. Total energy = 6636.7133 kcal/mol (6632.5361 without restraints) Performing minimization step: 2921. Total energy = 6634.9997 kcal/mol (6630.8238 without restraints) Performing minimization step: 2922. Total energy = 6633.2877 kcal/mol (6629.1130 without restraints) Performing minimization step: 2923. Total energy = 6631.5772 kcal/mol (6627.4036 without restraints) Performing minimization step: 2924. Total energy = 6629.8682 kcal/mol (6625.6961 without restraints) Performing minimization step: 2925. Total energy = 6628.1612 kcal/mol (6623.9901 without restraints) Performing minimization step: 2926. Total energy = 6626.4555 kcal/mol (6622.2857 without restraints) Performing minimization step: 2927. Total energy = 6624.7512 kcal/mol (6620.5826 without restraints) Performing minimization step: 2928. Total energy = 6623.0484 kcal/mol (6618.8810 without restraints) Performing minimization step: 2929. Total energy = 6621.3474 kcal/mol (6617.1812 without restraints) Performing minimization step: 2930. Total energy = 6619.6475 kcal/mol (6615.4825 without restraints) Performing minimization step: 2931. Total energy = 6617.9493 kcal/mol (6613.7855 without restraints) Performing minimization step: 2932. Total energy = 6616.2525 kcal/mol (6612.0900 without restraints) Performing minimization step: 2933. Total energy = 6614.5574 kcal/mol (6610.3960 without restraints) Performing minimization step: 2934. Total energy = 6612.8640 kcal/mol (6608.7039 without restraints) Performing minimization step: 2935. Total energy = 6611.1723 kcal/mol (6607.0135 without restraints) Performing minimization step: 2936. Total energy = 6609.4818 kcal/mol (6605.3242 without restraints) Performing minimization step: 2937. Total energy = 6607.7933 kcal/mol (6603.6368 without restraints) Performing minimization step: 2938. Total energy = 6606.1056 kcal/mol (6601.9503 without restraints) Performing minimization step: 2939. Total energy = 6604.4196 kcal/mol (6600.2656 without restraints) Performing minimization step: 2940. Total energy = 6602.7353 kcal/mol (6598.5824 without restraints) Performing minimization step: 2941. Total energy = 6601.0524 kcal/mol (6596.9008 without restraints) Performing minimization step: 2942. Total energy = 6599.3709 kcal/mol (6595.2205 without restraints) Performing minimization step: 2943. Total energy = 6597.6914 kcal/mol (6593.5423 without restraints) Performing minimization step: 2944. Total energy = 6596.0132 kcal/mol (6591.8651 without restraints) Performing minimization step: 2945. Total energy = 6594.3365 kcal/mol (6590.1898 without restraints) Performing minimization step: 2946. Total energy = 6592.6613 kcal/mol (6588.5158 without restraints) Performing minimization step: 2947. Total energy = 6590.9874 kcal/mol (6586.8431 without restraints) Performing minimization step: 2948. Total energy = 6589.3153 kcal/mol (6585.1722 without restraints) Performing minimization step: 2949. Total energy = 6587.6450 kcal/mol (6583.5030 without restraints) Performing minimization step: 2950. Total energy = 6585.9758 kcal/mol (6581.8351 without restraints) Performing minimization step: 2951. Total energy = 6584.3082 kcal/mol (6580.1687 without restraints) Performing minimization step: 2952. Total energy = 6582.6424 kcal/mol (6578.5041 without restraints) Performing minimization step: 2953. Total energy = 6580.9778 kcal/mol (6576.8407 without restraints) Performing minimization step: 2954. Total energy = 6579.3147 kcal/mol (6575.1789 without restraints) Performing minimization step: 2955. Total energy = 6577.6531 kcal/mol (6573.5185 without restraints) Performing minimization step: 2956. Total energy = 6575.9933 kcal/mol (6571.8599 without restraints) Performing minimization step: 2957. Total energy = 6574.3348 kcal/mol (6570.2027 without restraints) Performing minimization step: 2958. Total energy = 6572.6779 kcal/mol (6568.5469 without restraints) Performing minimization step: 2959. Total energy = 6571.0224 kcal/mol (6566.8926 without restraints) Performing minimization step: 2960. Total energy = 6569.3682 kcal/mol (6565.2396 without restraints) Performing minimization step: 2961. Total energy = 6567.7155 kcal/mol (6563.5881 without restraints) Performing minimization step: 2962. Total energy = 6566.0655 kcal/mol (6561.9394 without restraints) Performing minimization step: 2963. Total energy = 6564.4158 kcal/mol (6560.2908 without restraints) Performing minimization step: 2964. Total energy = 6562.7678 kcal/mol (6558.6440 without restraints) Performing minimization step: 2965. Total energy = 6561.1216 kcal/mol (6556.9990 without restraints) Performing minimization step: 2966. Total energy = 6559.4773 kcal/mol (6555.3559 without restraints) Performing minimization step: 2967. Total energy = 6557.8339 kcal/mol (6553.7137 without restraints) Performing minimization step: 2968. Total energy = 6556.1921 kcal/mol (6552.0731 without restraints) Performing minimization step: 2969. Total energy = 6554.5521 kcal/mol (6550.4344 without restraints) Performing minimization step: 2970. Total energy = 6552.9132 kcal/mol (6548.7966 without restraints) Performing minimization step: 2971. Total energy = 6551.2757 kcal/mol (6547.1604 without restraints) Performing minimization step: 2972. Total energy = 6549.6398 kcal/mol (6545.5256 without restraints) Performing minimization step: 2973. Total energy = 6548.0055 kcal/mol (6543.8926 without restraints) Performing minimization step: 2974. Total energy = 6546.3726 kcal/mol (6542.2609 without restraints) Performing minimization step: 2975. Total energy = 6544.7413 kcal/mol (6540.6308 without restraints) Performing minimization step: 2976. Total energy = 6543.1113 kcal/mol (6539.0020 without restraints) Performing minimization step: 2977. Total energy = 6541.4830 kcal/mol (6537.3749 without restraints) Performing minimization step: 2978. Total energy = 6539.8561 kcal/mol (6535.7492 without restraints) Performing minimization step: 2979. Total energy = 6538.2307 kcal/mol (6534.1249 without restraints) Performing minimization step: 2980. Total energy = 6536.6067 kcal/mol (6532.5021 without restraints) Performing minimization step: 2981. Total energy = 6534.9844 kcal/mol (6530.8811 without restraints) Performing minimization step: 2982. Total energy = 6533.3632 kcal/mol (6529.2610 without restraints) Performing minimization step: 2983. Total energy = 6531.7437 kcal/mol (6527.6428 without restraints) Performing minimization step: 2984. Total energy = 6530.1258 kcal/mol (6526.0261 without restraints) Performing minimization step: 2985. Total energy = 6528.5096 kcal/mol (6524.4112 without restraints) Performing minimization step: 2986. Total energy = 6526.8944 kcal/mol (6522.7970 without restraints) Performing minimization step: 2987. Total energy = 6525.2807 kcal/mol (6521.1846 without restraints) Performing minimization step: 2988. Total energy = 6523.6687 kcal/mol (6519.5737 without restraints) Performing minimization step: 2989. Total energy = 6522.0581 kcal/mol (6517.9643 without restraints) Performing minimization step: 2990. Total energy = 6520.4492 kcal/mol (6516.3566 without restraints) Performing minimization step: 2991. Total energy = 6518.8419 kcal/mol (6514.7506 without restraints) Performing minimization step: 2992. Total energy = 6517.2356 kcal/mol (6513.1454 without restraints) Performing minimization step: 2993. Total energy = 6515.6308 kcal/mol (6511.5419 without restraints) Performing minimization step: 2994. Total energy = 6514.0276 kcal/mol (6509.9399 without restraints) Performing minimization step: 2995. Total energy = 6512.4259 kcal/mol (6508.3394 without restraints) Performing minimization step: 2996. Total energy = 6510.8258 kcal/mol (6506.7404 without restraints) Performing minimization step: 2997. Total energy = 6509.2268 kcal/mol (6505.1427 without restraints) Performing minimization step: 2998. Total energy = 6507.6295 kcal/mol (6503.5466 without restraints) Performing minimization step: 2999. Total energy = 6506.0336 kcal/mol (6501.9518 without restraints) Performing minimization step: 3000. Total energy = 6504.4400 kcal/mol (6500.3595 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 6502.8474 kcal/mol (6498.7680 without restraints) Performing minimization step: 3002. Total energy = 6501.2561 kcal/mol (6497.1779 without restraints) Performing minimization step: 3003. Total energy = 6499.6661 kcal/mol (6495.5891 without restraints) Performing minimization step: 3004. Total energy = 6498.0779 kcal/mol (6494.0021 without restraints) Performing minimization step: 3005. Total energy = 6496.4912 kcal/mol (6492.4166 without restraints) Performing minimization step: 3006. Total energy = 6494.9059 kcal/mol (6490.8324 without restraints) Performing minimization step: 3007. Total energy = 6493.3218 kcal/mol (6489.2496 without restraints) Performing minimization step: 3008. Total energy = 6491.7394 kcal/mol (6487.6684 without restraints) Performing minimization step: 3009. Total energy = 6490.1581 kcal/mol (6486.0883 without restraints) Performing minimization step: 3010. Total energy = 6488.5786 kcal/mol (6484.5100 without restraints) Performing minimization step: 3011. Total energy = 6487.0007 kcal/mol (6482.9332 without restraints) Performing minimization step: 3012. Total energy = 6485.4240 kcal/mol (6481.3578 without restraints) Performing minimization step: 3013. Total energy = 6483.8491 kcal/mol (6479.7839 without restraints) Performing minimization step: 3014. Total energy = 6482.2751 kcal/mol (6478.2112 without restraints) Performing minimization step: 3015. Total energy = 6480.7026 kcal/mol (6476.6399 without restraints) Performing minimization step: 3016. Total energy = 6479.1321 kcal/mol (6475.0707 without restraints) Performing minimization step: 3017. Total energy = 6477.5633 kcal/mol (6473.5029 without restraints) Performing minimization step: 3018. Total energy = 6475.9954 kcal/mol (6471.9362 without restraints) Performing minimization step: 3019. Total energy = 6474.4289 kcal/mol (6470.3710 without restraints) Performing minimization step: 3020. Total energy = 6472.8643 kcal/mol (6468.8077 without restraints) Performing minimization step: 3021. Total energy = 6471.3012 kcal/mol (6467.2457 without restraints) Performing minimization step: 3022. Total energy = 6469.7395 kcal/mol (6465.6852 without restraints) Performing minimization step: 3023. Total energy = 6468.1789 kcal/mol (6464.1257 without restraints) Performing minimization step: 3024. Total energy = 6466.6195 kcal/mol (6462.5676 without restraints) Performing minimization step: 3025. Total energy = 6465.0620 kcal/mol (6461.0112 without restraints) Performing minimization step: 3026. Total energy = 6463.5061 kcal/mol (6459.4564 without restraints) Performing minimization step: 3027. Total energy = 6461.9513 kcal/mol (6457.9030 without restraints) Performing minimization step: 3028. Total energy = 6460.3983 kcal/mol (6456.3510 without restraints) Performing minimization step: 3029. Total energy = 6458.8469 kcal/mol (6454.8008 without restraints) Performing minimization step: 3030. Total energy = 6457.2962 kcal/mol (6453.2513 without restraints) Performing minimization step: 3031. Total energy = 6455.7468 kcal/mol (6451.7031 without restraints) Performing minimization step: 3032. Total energy = 6454.1989 kcal/mol (6450.1563 without restraints) Performing minimization step: 3033. Total energy = 6452.6526 kcal/mol (6448.6113 without restraints) Performing minimization step: 3034. Total energy = 6451.1081 kcal/mol (6447.0679 without restraints) Performing minimization step: 3035. Total energy = 6449.5648 kcal/mol (6445.5258 without restraints) Performing minimization step: 3036. Total energy = 6448.0228 kcal/mol (6443.9850 without restraints) Performing minimization step: 3037. Total energy = 6446.4824 kcal/mol (6442.4457 without restraints) Performing minimization step: 3038. Total energy = 6444.9435 kcal/mol (6440.9080 without restraints) Performing minimization step: 3039. Total energy = 6443.4061 kcal/mol (6439.3718 without restraints) Performing minimization step: 3040. Total energy = 6441.8703 kcal/mol (6437.8373 without restraints) Performing minimization step: 3041. Total energy = 6440.3358 kcal/mol (6436.3040 without restraints) Performing minimization step: 3042. Total energy = 6438.8026 kcal/mol (6434.7719 without restraints) Performing minimization step: 3043. Total energy = 6437.2710 kcal/mol (6433.2415 without restraints) Performing minimization step: 3044. Total energy = 6435.7408 kcal/mol (6431.7124 without restraints) Performing minimization step: 3045. Total energy = 6434.2124 kcal/mol (6430.1853 without restraints) Performing minimization step: 3046. Total energy = 6432.6850 kcal/mol (6428.6590 without restraints) Performing minimization step: 3047. Total energy = 6431.1589 kcal/mol (6427.1340 without restraints) Performing minimization step: 3048. Total energy = 6429.6341 kcal/mol (6425.6105 without restraints) Performing minimization step: 3049. Total energy = 6428.1109 kcal/mol (6424.0885 without restraints) Performing minimization step: 3050. Total energy = 6426.5891 kcal/mol (6422.5678 without restraints) Performing minimization step: 3051. Total energy = 6425.0694 kcal/mol (6421.0493 without restraints) Performing minimization step: 3052. Total energy = 6423.5505 kcal/mol (6419.5317 without restraints) Performing minimization step: 3053. Total energy = 6422.0331 kcal/mol (6418.0153 without restraints) Performing minimization step: 3054. Total energy = 6420.5169 kcal/mol (6416.5003 without restraints) Performing minimization step: 3055. Total energy = 6419.0021 kcal/mol (6414.9867 without restraints) Performing minimization step: 3056. Total energy = 6417.4889 kcal/mol (6413.4746 without restraints) Performing minimization step: 3057. Total energy = 6415.9771 kcal/mol (6411.9641 without restraints) Performing minimization step: 3058. Total energy = 6414.4667 kcal/mol (6410.4548 without restraints) Performing minimization step: 3059. Total energy = 6412.9581 kcal/mol (6408.9474 without restraints) Performing minimization step: 3060. Total energy = 6411.4501 kcal/mol (6407.4407 without restraints) Performing minimization step: 3061. Total energy = 6409.9440 kcal/mol (6405.9357 without restraints) Performing minimization step: 3062. Total energy = 6408.4395 kcal/mol (6404.4323 without restraints) Performing minimization step: 3063. Total energy = 6406.9364 kcal/mol (6402.9304 without restraints) Performing minimization step: 3064. Total energy = 6405.4346 kcal/mol (6401.4297 without restraints) Performing minimization step: 3065. Total energy = 6403.9341 kcal/mol (6399.9304 without restraints) Performing minimization step: 3066. Total energy = 6402.4351 kcal/mol (6398.4326 without restraints) Performing minimization step: 3067. Total energy = 6400.9373 kcal/mol (6396.9360 without restraints) Performing minimization step: 3068. Total energy = 6399.4410 kcal/mol (6395.4408 without restraints) Performing minimization step: 3069. Total energy = 6397.9457 kcal/mol (6393.9466 without restraints) Performing minimization step: 3070. Total energy = 6396.4521 kcal/mol (6392.4543 without restraints) Performing minimization step: 3071. Total energy = 6394.9600 kcal/mol (6390.9633 without restraints) Performing minimization step: 3072. Total energy = 6393.4693 kcal/mol (6389.4738 without restraints) Performing minimization step: 3073. Total energy = 6391.9795 kcal/mol (6387.9851 without restraints) Performing minimization step: 3074. Total energy = 6390.4919 kcal/mol (6386.4988 without restraints) Performing minimization step: 3075. Total energy = 6389.0055 kcal/mol (6385.0135 without restraints) Performing minimization step: 3076. Total energy = 6387.5203 kcal/mol (6383.5295 without restraints) Performing minimization step: 3077. Total energy = 6386.0367 kcal/mol (6382.0470 without restraints) Performing minimization step: 3078. Total energy = 6384.5544 kcal/mol (6380.5658 without restraints) Performing minimization step: 3079. Total energy = 6383.0734 kcal/mol (6379.0861 without restraints) Performing minimization step: 3080. Total energy = 6381.5941 kcal/mol (6377.6079 without restraints) Performing minimization step: 3081. Total energy = 6380.1161 kcal/mol (6376.1311 without restraints) Performing minimization step: 3082. Total energy = 6378.6396 kcal/mol (6374.6558 without restraints) Performing minimization step: 3083. Total energy = 6377.1643 kcal/mol (6373.1816 without restraints) Performing minimization step: 3084. Total energy = 6375.6903 kcal/mol (6371.7088 without restraints) Performing minimization step: 3085. Total energy = 6374.2179 kcal/mol (6370.2374 without restraints) Performing minimization step: 3086. Total energy = 6372.7466 kcal/mol (6368.7674 without restraints) Performing minimization step: 3087. Total energy = 6371.2768 kcal/mol (6367.2988 without restraints) Performing minimization step: 3088. Total energy = 6369.8087 kcal/mol (6365.8318 without restraints) Performing minimization step: 3089. Total energy = 6368.3417 kcal/mol (6364.3660 without restraints) Performing minimization step: 3090. Total energy = 6366.8763 kcal/mol (6362.9018 without restraints) Performing minimization step: 3091. Total energy = 6365.4123 kcal/mol (6361.4389 without restraints) Performing minimization step: 3092. Total energy = 6363.9496 kcal/mol (6359.9774 without restraints) Performing minimization step: 3093. Total energy = 6362.4883 kcal/mol (6358.5171 without restraints) Performing minimization step: 3094. Total energy = 6361.0287 kcal/mol (6357.0587 without restraints) Performing minimization step: 3095. Total energy = 6359.5698 kcal/mol (6355.6010 without restraints) Performing minimization step: 3096. Total energy = 6358.1126 kcal/mol (6354.1450 without restraints) Performing minimization step: 3097. Total energy = 6356.6562 kcal/mol (6352.6898 without restraints) Performing minimization step: 3098. Total energy = 6355.2017 kcal/mol (6351.2364 without restraints) Performing minimization step: 3099. Total energy = 6353.7485 kcal/mol (6349.7845 without restraints) Performing minimization step: 3100. Total energy = 6352.2970 kcal/mol (6348.3340 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 6350.8464 kcal/mol (6346.8846 without restraints) Performing minimization step: 3102. Total energy = 6349.3972 kcal/mol (6345.4365 without restraints) Performing minimization step: 3103. Total energy = 6347.9494 kcal/mol (6343.9899 without restraints) Performing minimization step: 3104. Total energy = 6346.5034 kcal/mol (6342.5450 without restraints) Performing minimization step: 3105. Total energy = 6345.0589 kcal/mol (6341.1019 without restraints) Performing minimization step: 3106. Total energy = 6343.6155 kcal/mol (6339.6595 without restraints) Performing minimization step: 3107. Total energy = 6342.1734 kcal/mol (6338.2184 without restraints) Performing minimization step: 3108. Total energy = 6340.7327 kcal/mol (6336.7790 without restraints) Performing minimization step: 3109. Total energy = 6339.2933 kcal/mol (6335.3407 without restraints) Performing minimization step: 3110. Total energy = 6337.8552 kcal/mol (6333.9038 without restraints) Performing minimization step: 3111. Total energy = 6336.4186 kcal/mol (6332.4684 without restraints) Performing minimization step: 3112. Total energy = 6334.9837 kcal/mol (6331.0346 without restraints) Performing minimization step: 3113. Total energy = 6333.5499 kcal/mol (6329.6019 without restraints) Performing minimization step: 3114. Total energy = 6332.1172 kcal/mol (6328.1705 without restraints) Performing minimization step: 3115. Total energy = 6330.6859 kcal/mol (6326.7402 without restraints) Performing minimization step: 3116. Total energy = 6329.2561 kcal/mol (6325.3116 without restraints) Performing minimization step: 3117. Total energy = 6327.8276 kcal/mol (6323.8843 without restraints) Performing minimization step: 3118. Total energy = 6326.4004 kcal/mol (6322.4581 without restraints) Performing minimization step: 3119. Total energy = 6324.9747 kcal/mol (6321.0337 without restraints) Performing minimization step: 3120. Total energy = 6323.5504 kcal/mol (6319.6105 without restraints) Performing minimization step: 3121. Total energy = 6322.1273 kcal/mol (6318.1886 without restraints) Performing minimization step: 3122. Total energy = 6320.7056 kcal/mol (6316.7680 without restraints) Performing minimization step: 3123. Total energy = 6319.2852 kcal/mol (6315.3488 without restraints) Performing minimization step: 3124. Total energy = 6317.8665 kcal/mol (6313.9312 without restraints) Performing minimization step: 3125. Total energy = 6316.4479 kcal/mol (6312.5138 without restraints) Performing minimization step: 3126. Total energy = 6315.0321 kcal/mol (6311.0991 without restraints) Performing minimization step: 3127. Total energy = 6313.6177 kcal/mol (6309.6859 without restraints) Performing minimization step: 3128. Total energy = 6312.2040 kcal/mol (6308.2732 without restraints) Performing minimization step: 3129. Total energy = 6310.7915 kcal/mol (6306.8619 without restraints) Performing minimization step: 3130. Total energy = 6309.3808 kcal/mol (6305.4526 without restraints) Performing minimization step: 3131. Total energy = 6307.9719 kcal/mol (6304.0447 without restraints) Performing minimization step: 3132. Total energy = 6306.5636 kcal/mol (6302.6375 without restraints) Performing minimization step: 3133. Total energy = 6305.1569 kcal/mol (6301.2320 without restraints) Performing minimization step: 3134. Total energy = 6303.7515 kcal/mol (6299.8277 without restraints) Performing minimization step: 3135. Total energy = 6302.3474 kcal/mol (6298.4247 without restraints) Performing minimization step: 3136. Total energy = 6300.9448 kcal/mol (6297.0233 without restraints) Performing minimization step: 3137. Total energy = 6299.5433 kcal/mol (6295.6230 without restraints) Performing minimization step: 3138. Total energy = 6298.1435 kcal/mol (6294.2243 without restraints) Performing minimization step: 3139. Total energy = 6296.7448 kcal/mol (6292.8267 without restraints) Performing minimization step: 3140. Total energy = 6295.3476 kcal/mol (6291.4307 without restraints) Performing minimization step: 3141. Total energy = 6293.9515 kcal/mol (6290.0357 without restraints) Performing minimization step: 3142. Total energy = 6292.5572 kcal/mol (6288.6428 without restraints) Performing minimization step: 3143. Total energy = 6291.1642 kcal/mol (6287.2507 without restraints) Performing minimization step: 3144. Total energy = 6289.7722 kcal/mol (6285.8598 without restraints) Performing minimization step: 3145. Total energy = 6288.3814 kcal/mol (6284.4702 without restraints) Performing minimization step: 3146. Total energy = 6286.9921 kcal/mol (6283.0821 without restraints) Performing minimization step: 3147. Total energy = 6285.6044 kcal/mol (6281.6956 without restraints) Performing minimization step: 3148. Total energy = 6284.2178 kcal/mol (6280.3100 without restraints) Performing minimization step: 3149. Total energy = 6282.8327 kcal/mol (6278.9260 without restraints) Performing minimization step: 3150. Total energy = 6281.4488 kcal/mol (6277.5433 without restraints) Performing minimization step: 3151. Total energy = 6280.0664 kcal/mol (6276.1620 without restraints) Performing minimization step: 3152. Total energy = 6278.6850 kcal/mol (6274.7817 without restraints) Performing minimization step: 3153. Total energy = 6277.3051 kcal/mol (6273.4031 without restraints) Performing minimization step: 3154. Total energy = 6275.9264 kcal/mol (6272.0255 without restraints) Performing minimization step: 3155. Total energy = 6274.5490 kcal/mol (6270.6492 without restraints) Performing minimization step: 3156. Total energy = 6273.1731 kcal/mol (6269.2745 without restraints) Performing minimization step: 3157. Total energy = 6271.7986 kcal/mol (6267.9011 without restraints) Performing minimization step: 3158. Total energy = 6270.4258 kcal/mol (6266.5294 without restraints) Performing minimization step: 3159. Total energy = 6269.0535 kcal/mol (6265.1582 without restraints) Performing minimization step: 3160. Total energy = 6267.6828 kcal/mol (6263.7886 without restraints) Performing minimization step: 3161. Total energy = 6266.3133 kcal/mol (6262.4205 without restraints) Performing minimization step: 3162. Total energy = 6264.9458 kcal/mol (6261.0540 without restraints) Performing minimization step: 3163. Total energy = 6263.5790 kcal/mol (6259.6883 without restraints) Performing minimization step: 3164. Total energy = 6262.2135 kcal/mol (6258.3240 without restraints) Performing minimization step: 3165. Total energy = 6260.8494 kcal/mol (6256.9610 without restraints) Performing minimization step: 3166. Total energy = 6259.4866 kcal/mol (6255.5993 without restraints) Performing minimization step: 3167. Total energy = 6258.1251 kcal/mol (6254.2389 without restraints) Performing minimization step: 3168. Total energy = 6256.7648 kcal/mol (6252.8796 without restraints) Performing minimization step: 3169. Total energy = 6255.4057 kcal/mol (6251.5217 without restraints) Performing minimization step: 3170. Total energy = 6254.0479 kcal/mol (6250.1651 without restraints) Performing minimization step: 3171. Total energy = 6252.6918 kcal/mol (6248.8102 without restraints) Performing minimization step: 3172. Total energy = 6251.3368 kcal/mol (6247.4563 without restraints) Performing minimization step: 3173. Total energy = 6249.9836 kcal/mol (6246.1042 without restraints) Performing minimization step: 3174. Total energy = 6248.6309 kcal/mol (6244.7527 without restraints) Performing minimization step: 3175. Total energy = 6247.2801 kcal/mol (6243.4030 without restraints) Performing minimization step: 3176. Total energy = 6245.9305 kcal/mol (6242.0546 without restraints) Performing minimization step: 3177. Total energy = 6244.5822 kcal/mol (6240.7075 without restraints) Performing minimization step: 3178. Total energy = 6243.2349 kcal/mol (6239.3612 without restraints) Performing minimization step: 3179. Total energy = 6241.8891 kcal/mol (6238.0165 without restraints) Performing minimization step: 3180. Total energy = 6240.5446 kcal/mol (6236.6732 without restraints) Performing minimization step: 3181. Total energy = 6239.2017 kcal/mol (6235.3313 without restraints) Performing minimization step: 3182. Total energy = 6237.8602 kcal/mol (6233.9910 without restraints) Performing minimization step: 3183. Total energy = 6236.5197 kcal/mol (6232.6516 without restraints) Performing minimization step: 3184. Total energy = 6235.1805 kcal/mol (6231.3135 without restraints) Performing minimization step: 3185. Total energy = 6233.8427 kcal/mol (6229.9769 without restraints) Performing minimization step: 3186. Total energy = 6232.5061 kcal/mol (6228.6414 without restraints) Performing minimization step: 3187. Total energy = 6231.1712 kcal/mol (6227.3077 without restraints) Performing minimization step: 3188. Total energy = 6229.8374 kcal/mol (6225.9749 without restraints) Performing minimization step: 3189. Total energy = 6228.5047 kcal/mol (6224.6433 without restraints) Performing minimization step: 3190. Total energy = 6227.1736 kcal/mol (6223.3134 without restraints) Performing minimization step: 3191. Total energy = 6225.8434 kcal/mol (6221.9843 without restraints) Performing minimization step: 3192. Total energy = 6224.5146 kcal/mol (6220.6566 without restraints) Performing minimization step: 3193. Total energy = 6223.1870 kcal/mol (6219.3301 without restraints) Performing minimization step: 3194. Total energy = 6221.8607 kcal/mol (6218.0050 without restraints) Performing minimization step: 3195. Total energy = 6220.5358 kcal/mol (6216.6813 without restraints) Performing minimization step: 3196. Total energy = 6219.2122 kcal/mol (6215.3587 without restraints) Performing minimization step: 3197. Total energy = 6217.8898 kcal/mol (6214.0374 without restraints) Performing minimization step: 3198. Total energy = 6216.5689 kcal/mol (6212.7177 without restraints) Performing minimization step: 3199. Total energy = 6215.2491 kcal/mol (6211.3990 without restraints) Performing minimization step: 3200. Total energy = 6213.9306 kcal/mol (6210.0816 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 6212.6140 kcal/mol (6208.7663 without restraints) Performing minimization step: 3202. Total energy = 6211.2983 kcal/mol (6207.4515 without restraints) Performing minimization step: 3203. Total energy = 6209.9836 kcal/mol (6206.1380 without restraints) Performing minimization step: 3204. Total energy = 6208.6704 kcal/mol (6204.8259 without restraints) Performing minimization step: 3205. Total energy = 6207.3584 kcal/mol (6203.5152 without restraints) Performing minimization step: 3206. Total energy = 6206.0478 kcal/mol (6202.2055 without restraints) Performing minimization step: 3207. Total energy = 6204.7386 kcal/mol (6200.8975 without restraints) Performing minimization step: 3208. Total energy = 6203.4302 kcal/mol (6199.5902 without restraints) Performing minimization step: 3209. Total energy = 6202.1233 kcal/mol (6198.2844 without restraints) Performing minimization step: 3210. Total energy = 6200.8175 kcal/mol (6196.9796 without restraints) Performing minimization step: 3211. Total energy = 6199.5130 kcal/mol (6195.6763 without restraints) Performing minimization step: 3212. Total energy = 6198.2102 kcal/mol (6194.3747 without restraints) Performing minimization step: 3213. Total energy = 6196.9083 kcal/mol (6193.0739 without restraints) Performing minimization step: 3214. Total energy = 6195.6080 kcal/mol (6191.7747 without restraints) Performing minimization step: 3215. Total energy = 6194.3091 kcal/mol (6190.4769 without restraints) Performing minimization step: 3216. Total energy = 6193.0107 kcal/mol (6189.1797 without restraints) Performing minimization step: 3217. Total energy = 6191.7138 kcal/mol (6187.8838 without restraints) Performing minimization step: 3218. Total energy = 6190.4186 kcal/mol (6186.5895 without restraints) Performing minimization step: 3219. Total energy = 6189.1242 kcal/mol (6185.2965 without restraints) Performing minimization step: 3220. Total energy = 6187.8319 kcal/mol (6184.0053 without restraints) Performing minimization step: 3221. Total energy = 6186.5405 kcal/mol (6182.7150 without restraints) Performing minimization step: 3222. Total energy = 6185.2499 kcal/mol (6181.4255 without restraints) Performing minimization step: 3223. Total energy = 6183.9608 kcal/mol (6180.1375 without restraints) Performing minimization step: 3224. Total energy = 6182.6732 kcal/mol (6178.8511 without restraints) Performing minimization step: 3225. Total energy = 6181.3867 kcal/mol (6177.5656 without restraints) Performing minimization step: 3226. Total energy = 6180.1015 kcal/mol (6176.2816 without restraints) Performing minimization step: 3227. Total energy = 6178.8172 kcal/mol (6174.9984 without restraints) Performing minimization step: 3228. Total energy = 6177.5346 kcal/mol (6173.7169 without restraints) Performing minimization step: 3229. Total energy = 6176.2533 kcal/mol (6172.4367 without restraints) Performing minimization step: 3230. Total energy = 6174.9730 kcal/mol (6171.1575 without restraints) Performing minimization step: 3231. Total energy = 6173.6943 kcal/mol (6169.8800 without restraints) Performing minimization step: 3232. Total energy = 6172.4166 kcal/mol (6168.6033 without restraints) Performing minimization step: 3233. Total energy = 6171.1405 kcal/mol (6167.3283 without restraints) Performing minimization step: 3234. Total energy = 6169.8654 kcal/mol (6166.0544 without restraints) Performing minimization step: 3235. Total energy = 6168.5917 kcal/mol (6164.7819 without restraints) Performing minimization step: 3236. Total energy = 6167.3194 kcal/mol (6163.5106 without restraints) Performing minimization step: 3237. Total energy = 6166.0479 kcal/mol (6162.2401 without restraints) Performing minimization step: 3238. Total energy = 6164.7778 kcal/mol (6160.9713 without restraints) Performing minimization step: 3239. Total energy = 6163.5092 kcal/mol (6159.7038 without restraints) Performing minimization step: 3240. Total energy = 6162.2416 kcal/mol (6158.4372 without restraints) Performing minimization step: 3241. Total energy = 6160.9755 kcal/mol (6157.1723 without restraints) Performing minimization step: 3242. Total energy = 6159.7107 kcal/mol (6155.9085 without restraints) Performing minimization step: 3243. Total energy = 6158.4468 kcal/mol (6154.6457 without restraints) Performing minimization step: 3244. Total energy = 6157.1841 kcal/mol (6153.3841 without restraints) Performing minimization step: 3245. Total energy = 6155.9227 kcal/mol (6152.1239 without restraints) Performing minimization step: 3246. Total energy = 6154.6626 kcal/mol (6150.8649 without restraints) Performing minimization step: 3247. Total energy = 6153.4034 kcal/mol (6149.6068 without restraints) Performing minimization step: 3248. Total energy = 6152.1461 kcal/mol (6148.3506 without restraints) Performing minimization step: 3249. Total energy = 6150.8898 kcal/mol (6147.0953 without restraints) Performing minimization step: 3250. Total energy = 6149.6341 kcal/mol (6145.8408 without restraints) Performing minimization step: 3251. Total energy = 6148.3800 kcal/mol (6144.5877 without restraints) Performing minimization step: 3252. Total energy = 6147.1273 kcal/mol (6143.3362 without restraints) Performing minimization step: 3253. Total energy = 6145.8759 kcal/mol (6142.0858 without restraints) Performing minimization step: 3254. Total energy = 6144.6256 kcal/mol (6140.8366 without restraints) Performing minimization step: 3255. Total energy = 6143.3767 kcal/mol (6139.5889 without restraints) Performing minimization step: 3256. Total energy = 6142.1289 kcal/mol (6138.3422 without restraints) Performing minimization step: 3257. Total energy = 6140.8824 kcal/mol (6137.0967 without restraints) Performing minimization step: 3258. Total energy = 6139.6369 kcal/mol (6135.8523 without restraints) Performing minimization step: 3259. Total energy = 6138.3926 kcal/mol (6134.6091 without restraints) Performing minimization step: 3260. Total energy = 6137.1501 kcal/mol (6133.3677 without restraints) Performing minimization step: 3261. Total energy = 6135.9084 kcal/mol (6132.1272 without restraints) Performing minimization step: 3262. Total energy = 6134.6685 kcal/mol (6130.8883 without restraints) Performing minimization step: 3263. Total energy = 6133.4292 kcal/mol (6129.6501 without restraints) Performing minimization step: 3264. Total energy = 6132.1917 kcal/mol (6128.4139 without restraints) Performing minimization step: 3265. Total energy = 6130.9551 kcal/mol (6127.1782 without restraints) Performing minimization step: 3266. Total energy = 6129.7195 kcal/mol (6125.9438 without restraints) Performing minimization step: 3267. Total energy = 6128.4858 kcal/mol (6124.7111 without restraints) Performing minimization step: 3268. Total energy = 6127.2527 kcal/mol (6123.4792 without restraints) Performing minimization step: 3269. Total energy = 6126.0218 kcal/mol (6122.2493 without restraints) Performing minimization step: 3270. Total energy = 6124.7911 kcal/mol (6121.0196 without restraints) Performing minimization step: 3271. Total energy = 6123.5618 kcal/mol (6119.7916 without restraints) Performing minimization step: 3272. Total energy = 6122.3337 kcal/mol (6118.5645 without restraints) Performing minimization step: 3273. Total energy = 6121.1072 kcal/mol (6117.3391 without restraints) Performing minimization step: 3274. Total energy = 6119.8813 kcal/mol (6116.1143 without restraints) Performing minimization step: 3275. Total energy = 6118.6574 kcal/mol (6114.8916 without restraints) Performing minimization step: 3276. Total energy = 6117.4347 kcal/mol (6113.6699 without restraints) Performing minimization step: 3277. Total energy = 6116.2129 kcal/mol (6112.4491 without restraints) Performing minimization step: 3278. Total energy = 6114.9920 kcal/mol (6111.2294 without restraints) Performing minimization step: 3279. Total energy = 6113.7724 kcal/mol (6110.0109 without restraints) Performing minimization step: 3280. Total energy = 6112.5540 kcal/mol (6108.7935 without restraints) Performing minimization step: 3281. Total energy = 6111.3367 kcal/mol (6107.5774 without restraints) Performing minimization step: 3282. Total energy = 6110.1208 kcal/mol (6106.3625 without restraints) Performing minimization step: 3283. Total energy = 6108.9059 kcal/mol (6105.1488 without restraints) Performing minimization step: 3284. Total energy = 6107.6928 kcal/mol (6103.9367 without restraints) Performing minimization step: 3285. Total energy = 6106.4806 kcal/mol (6102.7255 without restraints) Performing minimization step: 3286. Total energy = 6105.2697 kcal/mol (6101.5158 without restraints) Performing minimization step: 3287. Total energy = 6104.0602 kcal/mol (6100.3073 without restraints) Performing minimization step: 3288. Total energy = 6102.8514 kcal/mol (6099.0996 without restraints) Performing minimization step: 3289. Total energy = 6101.6438 kcal/mol (6097.8932 without restraints) Performing minimization step: 3290. Total energy = 6100.4377 kcal/mol (6096.6882 without restraints) Performing minimization step: 3291. Total energy = 6099.2327 kcal/mol (6095.4843 without restraints) Performing minimization step: 3292. Total energy = 6098.0287 kcal/mol (6094.2813 without restraints) Performing minimization step: 3293. Total energy = 6096.8260 kcal/mol (6093.0797 without restraints) Performing minimization step: 3294. Total energy = 6095.6245 kcal/mol (6091.8792 without restraints) Performing minimization step: 3295. Total energy = 6094.4240 kcal/mol (6090.6799 without restraints) Performing minimization step: 3296. Total energy = 6093.2250 kcal/mol (6089.4819 without restraints) Performing minimization step: 3297. Total energy = 6092.0271 kcal/mol (6088.2853 without restraints) Performing minimization step: 3298. Total energy = 6090.8310 kcal/mol (6087.0902 without restraints) Performing minimization step: 3299. Total energy = 6089.6356 kcal/mol (6085.8959 without restraints) Performing minimization step: 3300. Total energy = 6088.4415 kcal/mol (6084.7028 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 6087.2483 kcal/mol (6083.5107 without restraints) Performing minimization step: 3302. Total energy = 6086.0564 kcal/mol (6082.3198 without restraints) Performing minimization step: 3303. Total energy = 6084.8653 kcal/mol (6081.1299 without restraints) Performing minimization step: 3304. Total energy = 6083.6760 kcal/mol (6079.9419 without restraints) Performing minimization step: 3305. Total energy = 6082.4881 kcal/mol (6078.7548 without restraints) Performing minimization step: 3306. Total energy = 6081.3007 kcal/mol (6077.5685 without restraints) Performing minimization step: 3307. Total energy = 6080.1147 kcal/mol (6076.3835 without restraints) Performing minimization step: 3308. Total energy = 6078.9299 kcal/mol (6075.2000 without restraints) Performing minimization step: 3309. Total energy = 6077.7462 kcal/mol (6074.0172 without restraints) Performing minimization step: 3310. Total energy = 6076.5636 kcal/mol (6072.8357 without restraints) Performing minimization step: 3311. Total energy = 6075.3821 kcal/mol (6071.6554 without restraints) Performing minimization step: 3312. Total energy = 6074.2017 kcal/mol (6070.4759 without restraints) Performing minimization step: 3313. Total energy = 6073.0231 kcal/mol (6069.2986 without restraints) Performing minimization step: 3314. Total energy = 6071.8457 kcal/mol (6068.1221 without restraints) Performing minimization step: 3315. Total energy = 6070.6690 kcal/mol (6066.9465 without restraints) Performing minimization step: 3316. Total energy = 6069.4937 kcal/mol (6065.7723 without restraints) Performing minimization step: 3317. Total energy = 6068.3196 kcal/mol (6064.5994 without restraints) Performing minimization step: 3318. Total energy = 6067.1461 kcal/mol (6063.4268 without restraints) Performing minimization step: 3319. Total energy = 6065.9739 kcal/mol (6062.2557 without restraints) Performing minimization step: 3320. Total energy = 6064.8030 kcal/mol (6061.0859 without restraints) Performing minimization step: 3321. Total energy = 6063.6331 kcal/mol (6059.9169 without restraints) Performing minimization step: 3322. Total energy = 6062.4648 kcal/mol (6058.7499 without restraints) Performing minimization step: 3323. Total energy = 6061.2977 kcal/mol (6057.5837 without restraints) Performing minimization step: 3324. Total energy = 6060.1316 kcal/mol (6056.4187 without restraints) Performing minimization step: 3325. Total energy = 6058.9663 kcal/mol (6055.2545 without restraints) Performing minimization step: 3326. Total energy = 6057.8027 kcal/mol (6054.0920 without restraints) Performing minimization step: 3327. Total energy = 6056.6399 kcal/mol (6052.9302 without restraints) Performing minimization step: 3328. Total energy = 6055.4784 kcal/mol (6051.7698 without restraints) Performing minimization step: 3329. Total energy = 6054.3179 kcal/mol (6050.6104 without restraints) Performing minimization step: 3330. Total energy = 6053.1584 kcal/mol (6049.4519 without restraints) Performing minimization step: 3331. Total energy = 6052.0002 kcal/mol (6048.2948 without restraints) Performing minimization step: 3332. Total energy = 6050.8431 kcal/mol (6047.1388 without restraints) Performing minimization step: 3333. Total energy = 6049.6873 kcal/mol (6045.9840 without restraints) Performing minimization step: 3334. Total energy = 6048.5325 kcal/mol (6044.8303 without restraints) Performing minimization step: 3335. Total energy = 6047.3789 kcal/mol (6043.6778 without restraints) Performing minimization step: 3336. Total energy = 6046.2268 kcal/mol (6042.5270 without restraints) Performing minimization step: 3337. Total energy = 6045.0755 kcal/mol (6041.3767 without restraints) Performing minimization step: 3338. Total energy = 6043.9252 kcal/mol (6040.2273 without restraints) Performing minimization step: 3339. Total energy = 6042.7762 kcal/mol (6039.0794 without restraints) Performing minimization step: 3340. Total energy = 6041.6285 kcal/mol (6037.9326 without restraints) Performing minimization step: 3341. Total energy = 6040.4818 kcal/mol (6036.7871 without restraints) Performing minimization step: 3342. Total energy = 6039.3360 kcal/mol (6035.6422 without restraints) Performing minimization step: 3343. Total energy = 6038.1913 kcal/mol (6034.4988 without restraints) Performing minimization step: 3344. Total energy = 6037.0489 kcal/mol (6033.3574 without restraints) Performing minimization step: 3345. Total energy = 6035.9068 kcal/mol (6032.2163 without restraints) Performing minimization step: 3346. Total energy = 6034.7655 kcal/mol (6031.0761 without restraints) Performing minimization step: 3347. Total energy = 6033.6257 kcal/mol (6029.9374 without restraints) Performing minimization step: 3348. Total energy = 6032.4866 kcal/mol (6028.7994 without restraints) Performing minimization step: 3349. Total energy = 6031.3488 kcal/mol (6027.6627 without restraints) Performing minimization step: 3350. Total energy = 6030.2124 kcal/mol (6026.5273 without restraints) Performing minimization step: 3351. Total energy = 6029.0771 kcal/mol (6025.3929 without restraints) Performing minimization step: 3352. Total energy = 6027.9426 kcal/mol (6024.2596 without restraints) Performing minimization step: 3353. Total energy = 6026.8094 kcal/mol (6023.1274 without restraints) Performing minimization step: 3354. Total energy = 6025.6774 kcal/mol (6021.9966 without restraints) Performing minimization step: 3355. Total energy = 6024.5466 kcal/mol (6020.8667 without restraints) Performing minimization step: 3356. Total energy = 6023.4167 kcal/mol (6019.7378 without restraints) Performing minimization step: 3357. Total energy = 6022.2884 kcal/mol (6018.6106 without restraints) Performing minimization step: 3358. Total energy = 6021.1604 kcal/mol (6017.4837 without restraints) Performing minimization step: 3359. Total energy = 6020.0343 kcal/mol (6016.3589 without restraints) Performing minimization step: 3360. Total energy = 6018.9087 kcal/mol (6015.2341 without restraints) Performing minimization step: 3361. Total energy = 6017.7851 kcal/mol (6014.1116 without restraints) Performing minimization step: 3362. Total energy = 6016.6619 kcal/mol (6012.9894 without restraints) Performing minimization step: 3363. Total energy = 6015.5401 kcal/mol (6011.8687 without restraints) Performing minimization step: 3364. Total energy = 6014.4187 kcal/mol (6010.7482 without restraints) Performing minimization step: 3365. Total energy = 6013.2987 kcal/mol (6009.6294 without restraints) Performing minimization step: 3366. Total energy = 6012.1799 kcal/mol (6008.5116 without restraints) Performing minimization step: 3367. Total energy = 6011.0624 kcal/mol (6007.3952 without restraints) Performing minimization step: 3368. Total energy = 6009.9460 kcal/mol (6006.2799 without restraints) Performing minimization step: 3369. Total energy = 6008.8306 kcal/mol (6005.1655 without restraints) Performing minimization step: 3370. Total energy = 6007.7159 kcal/mol (6004.0519 without restraints) Performing minimization step: 3371. Total energy = 6006.6029 kcal/mol (6002.9399 without restraints) Performing minimization step: 3372. Total energy = 6005.4911 kcal/mol (6001.8292 without restraints) Performing minimization step: 3373. Total energy = 6004.3799 kcal/mol (6000.7190 without restraints) Performing minimization step: 3374. Total energy = 6003.2701 kcal/mol (5999.6103 without restraints) Performing minimization step: 3375. Total energy = 6002.1611 kcal/mol (5998.5023 without restraints) Performing minimization step: 3376. Total energy = 6001.0534 kcal/mol (5997.3956 without restraints) Performing minimization step: 3377. Total energy = 5999.9465 kcal/mol (5996.2899 without restraints) Performing minimization step: 3378. Total energy = 5998.8411 kcal/mol (5995.1855 without restraints) Performing minimization step: 3379. Total energy = 5997.7367 kcal/mol (5994.0822 without restraints) Performing minimization step: 3380. Total energy = 5996.6332 kcal/mol (5992.9797 without restraints) Performing minimization step: 3381. Total energy = 5995.5308 kcal/mol (5991.8783 without restraints) Performing minimization step: 3382. Total energy = 5994.4297 kcal/mol (5990.7782 without restraints) Performing minimization step: 3383. Total energy = 5993.3298 kcal/mol (5989.6794 without restraints) Performing minimization step: 3384. Total energy = 5992.2305 kcal/mol (5988.5811 without restraints) Performing minimization step: 3385. Total energy = 5991.1326 kcal/mol (5987.4843 without restraints) Performing minimization step: 3386. Total energy = 5990.0356 kcal/mol (5986.3884 without restraints) Performing minimization step: 3387. Total energy = 5988.9397 kcal/mol (5985.2935 without restraints) Performing minimization step: 3388. Total energy = 5987.8449 kcal/mol (5984.1998 without restraints) Performing minimization step: 3389. Total energy = 5986.7516 kcal/mol (5983.1075 without restraints) Performing minimization step: 3390. Total energy = 5985.6591 kcal/mol (5982.0160 without restraints) Performing minimization step: 3391. Total energy = 5984.5670 kcal/mol (5980.9250 without restraints) Performing minimization step: 3392. Total energy = 5983.4765 kcal/mol (5979.8354 without restraints) Performing minimization step: 3393. Total energy = 5982.3869 kcal/mol (5978.7469 without restraints) Performing minimization step: 3394. Total energy = 5981.2987 kcal/mol (5977.6600 without restraints) Performing minimization step: 3395. Total energy = 5980.2116 kcal/mol (5976.5737 without restraints) Performing minimization step: 3396. Total energy = 5979.1255 kcal/mol (5975.4887 without restraints) Performing minimization step: 3397. Total energy = 5978.0404 kcal/mol (5974.4046 without restraints) Performing minimization step: 3398. Total energy = 5976.9562 kcal/mol (5973.3214 without restraints) Performing minimization step: 3399. Total energy = 5975.8733 kcal/mol (5972.2397 without restraints) Performing minimization step: 3400. Total energy = 5974.7912 kcal/mol (5971.1585 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5973.7097 kcal/mol (5970.0780 without restraints) Performing minimization step: 3402. Total energy = 5972.6301 kcal/mol (5968.9995 without restraints) Performing minimization step: 3403. Total energy = 5971.5513 kcal/mol (5967.9217 without restraints) Performing minimization step: 3404. Total energy = 5970.4734 kcal/mol (5966.8448 without restraints) Performing minimization step: 3405. Total energy = 5969.3967 kcal/mol (5965.7693 without restraints) Performing minimization step: 3406. Total energy = 5968.3211 kcal/mol (5964.6945 without restraints) Performing minimization step: 3407. Total energy = 5967.2462 kcal/mol (5963.6207 without restraints) Performing minimization step: 3408. Total energy = 5966.1724 kcal/mol (5962.5480 without restraints) Performing minimization step: 3409. Total energy = 5965.0997 kcal/mol (5961.4763 without restraints) Performing minimization step: 3410. Total energy = 5964.0279 kcal/mol (5960.4056 without restraints) Performing minimization step: 3411. Total energy = 5962.9573 kcal/mol (5959.3360 without restraints) Performing minimization step: 3412. Total energy = 5961.8877 kcal/mol (5958.2674 without restraints) Performing minimization step: 3413. Total energy = 5960.8194 kcal/mol (5957.2001 without restraints) Performing minimization step: 3414. Total energy = 5959.7520 kcal/mol (5956.1337 without restraints) Performing minimization step: 3415. Total energy = 5958.6854 kcal/mol (5955.0682 without restraints) Performing minimization step: 3416. Total energy = 5957.6197 kcal/mol (5954.0035 without restraints) Performing minimization step: 3417. Total energy = 5956.5554 kcal/mol (5952.9403 without restraints) Performing minimization step: 3418. Total energy = 5955.4922 kcal/mol (5951.8781 without restraints) Performing minimization step: 3419. Total energy = 5954.4300 kcal/mol (5950.8169 without restraints) Performing minimization step: 3420. Total energy = 5953.3686 kcal/mol (5949.7565 without restraints) Performing minimization step: 3421. Total energy = 5952.3085 kcal/mol (5948.6974 without restraints) Performing minimization step: 3422. Total energy = 5951.2490 kcal/mol (5947.6391 without restraints) Performing minimization step: 3423. Total energy = 5950.1908 kcal/mol (5946.5818 without restraints) Performing minimization step: 3424. Total energy = 5949.1341 kcal/mol (5945.5263 without restraints) Performing minimization step: 3425. Total energy = 5948.0778 kcal/mol (5944.4707 without restraints) Performing minimization step: 3426. Total energy = 5947.0227 kcal/mol (5943.4167 without restraints) Performing minimization step: 3427. Total energy = 5945.9684 kcal/mol (5942.3635 without restraints) Performing minimization step: 3428. Total energy = 5944.9150 kcal/mol (5941.3114 without restraints) Performing minimization step: 3429. Total energy = 5943.8631 kcal/mol (5940.2603 without restraints) Performing minimization step: 3430. Total energy = 5942.8119 kcal/mol (5939.2101 without restraints) Performing minimization step: 3431. Total energy = 5941.7620 kcal/mol (5938.1613 without restraints) Performing minimization step: 3432. Total energy = 5940.7130 kcal/mol (5937.1132 without restraints) Performing minimization step: 3433. Total energy = 5939.6648 kcal/mol (5936.0660 without restraints) Performing minimization step: 3434. Total energy = 5938.6175 kcal/mol (5935.0198 without restraints) Performing minimization step: 3435. Total energy = 5937.5719 kcal/mol (5933.9752 without restraints) Performing minimization step: 3436. Total energy = 5936.5262 kcal/mol (5932.9305 without restraints) Performing minimization step: 3437. Total energy = 5935.4820 kcal/mol (5931.8873 without restraints) Performing minimization step: 3438. Total energy = 5934.4388 kcal/mol (5930.8451 without restraints) Performing minimization step: 3439. Total energy = 5933.3965 kcal/mol (5929.8038 without restraints) Performing minimization step: 3440. Total energy = 5932.3553 kcal/mol (5928.7637 without restraints) Performing minimization step: 3441. Total energy = 5931.3151 kcal/mol (5927.7245 without restraints) Performing minimization step: 3442. Total energy = 5930.2764 kcal/mol (5926.6868 without restraints) Performing minimization step: 3443. Total energy = 5929.2379 kcal/mol (5925.6493 without restraints) Performing minimization step: 3444. Total energy = 5928.2010 kcal/mol (5924.6133 without restraints) Performing minimization step: 3445. Total energy = 5927.1648 kcal/mol (5923.5782 without restraints) Performing minimization step: 3446. Total energy = 5926.1306 kcal/mol (5922.5451 without restraints) Performing minimization step: 3447. Total energy = 5925.0963 kcal/mol (5921.5117 without restraints) Performing minimization step: 3448. Total energy = 5924.0629 kcal/mol (5920.4794 without restraints) Performing minimization step: 3449. Total energy = 5923.0305 kcal/mol (5919.4479 without restraints) Performing minimization step: 3450. Total energy = 5921.9991 kcal/mol (5918.4175 without restraints) Performing minimization step: 3451. Total energy = 5920.9690 kcal/mol (5917.3887 without restraints) Performing minimization step: 3452. Total energy = 5919.9398 kcal/mol (5916.3603 without restraints) Performing minimization step: 3453. Total energy = 5918.9113 kcal/mol (5915.3328 without restraints) Performing minimization step: 3454. Total energy = 5917.8837 kcal/mol (5914.3062 without restraints) Performing minimization step: 3455. Total energy = 5916.8566 kcal/mol (5913.2800 without restraints) Performing minimization step: 3456. Total energy = 5915.8306 kcal/mol (5912.2551 without restraints) Performing minimization step: 3457. Total energy = 5914.8064 kcal/mol (5911.2319 without restraints) Performing minimization step: 3458. Total energy = 5913.7830 kcal/mol (5910.2095 without restraints) Performing minimization step: 3459. Total energy = 5912.7610 kcal/mol (5909.1885 without restraints) Performing minimization step: 3460. Total energy = 5911.7392 kcal/mol (5908.1678 without restraints) Performing minimization step: 3461. Total energy = 5910.7187 kcal/mol (5907.1483 without restraints) Performing minimization step: 3462. Total energy = 5909.6989 kcal/mol (5906.1295 without restraints) Performing minimization step: 3463. Total energy = 5908.6801 kcal/mol (5905.1117 without restraints) Performing minimization step: 3464. Total energy = 5907.6620 kcal/mol (5904.0946 without restraints) Performing minimization step: 3465. Total energy = 5906.6457 kcal/mol (5903.0793 without restraints) Performing minimization step: 3466. Total energy = 5905.6299 kcal/mol (5902.0645 without restraints) Performing minimization step: 3467. Total energy = 5904.6151 kcal/mol (5901.0507 without restraints) Performing minimization step: 3468. Total energy = 5903.6013 kcal/mol (5900.0379 without restraints) Performing minimization step: 3469. Total energy = 5902.5882 kcal/mol (5899.0258 without restraints) Performing minimization step: 3470. Total energy = 5901.5762 kcal/mol (5898.0148 without restraints) Performing minimization step: 3471. Total energy = 5900.5651 kcal/mol (5897.0048 without restraints) Performing minimization step: 3472. Total energy = 5899.5552 kcal/mol (5895.9958 without restraints) Performing minimization step: 3473. Total energy = 5898.5459 kcal/mol (5894.9875 without restraints) Performing minimization step: 3474. Total energy = 5897.5377 kcal/mol (5893.9803 without restraints) Performing minimization step: 3475. Total energy = 5896.5304 kcal/mol (5892.9741 without restraints) Performing minimization step: 3476. Total energy = 5895.5240 kcal/mol (5891.9686 without restraints) Performing minimization step: 3477. Total energy = 5894.5185 kcal/mol (5890.9640 without restraints) Performing minimization step: 3478. Total energy = 5893.5139 kcal/mol (5889.9606 without restraints) Performing minimization step: 3479. Total energy = 5892.5103 kcal/mol (5888.9579 without restraints) Performing minimization step: 3480. Total energy = 5891.5076 kcal/mol (5887.9563 without restraints) Performing minimization step: 3481. Total energy = 5890.5063 kcal/mol (5886.9559 without restraints) Performing minimization step: 3482. Total energy = 5889.5053 kcal/mol (5885.9558 without restraints) Performing minimization step: 3483. Total energy = 5888.5055 kcal/mol (5884.9571 without restraints) Performing minimization step: 3484. Total energy = 5887.5065 kcal/mol (5883.9590 without restraints) Performing minimization step: 3485. Total energy = 5886.5089 kcal/mol (5882.9624 without restraints) Performing minimization step: 3486. Total energy = 5885.5117 kcal/mol (5881.9663 without restraints) Performing minimization step: 3487. Total energy = 5884.5155 kcal/mol (5880.9710 without restraints) Performing minimization step: 3488. Total energy = 5883.5201 kcal/mol (5879.9766 without restraints) Performing minimization step: 3489. Total energy = 5882.5263 kcal/mol (5878.9838 without restraints) Performing minimization step: 3490. Total energy = 5881.5329 kcal/mol (5877.9913 without restraints) Performing minimization step: 3491. Total energy = 5880.5400 kcal/mol (5876.9995 without restraints) Performing minimization step: 3492. Total energy = 5879.5483 kcal/mol (5876.0088 without restraints) Performing minimization step: 3493. Total energy = 5878.5578 kcal/mol (5875.0192 without restraints) Performing minimization step: 3494. Total energy = 5877.5681 kcal/mol (5874.0306 without restraints) Performing minimization step: 3495. Total energy = 5876.5795 kcal/mol (5873.0429 without restraints) Performing minimization step: 3496. Total energy = 5875.5914 kcal/mol (5872.0558 without restraints) Performing minimization step: 3497. Total energy = 5874.6045 kcal/mol (5871.0699 without restraints) Performing minimization step: 3498. Total energy = 5873.6188 kcal/mol (5870.0853 without restraints) Performing minimization step: 3499. Total energy = 5872.6334 kcal/mol (5869.1008 without restraints) Performing minimization step: 3500. Total energy = 5871.6490 kcal/mol (5868.1174 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 5870.6660 kcal/mol (5867.1353 without restraints) Performing minimization step: 3502. Total energy = 5869.6831 kcal/mol (5866.1532 without restraints) Performing minimization step: 3503. Total energy = 5868.7014 kcal/mol (5865.1727 without restraints) Performing minimization step: 3504. Total energy = 5867.7208 kcal/mol (5864.1932 without restraints) Performing minimization step: 3505. Total energy = 5866.7412 kcal/mol (5863.2144 without restraints) Performing minimization step: 3506. Total energy = 5865.7623 kcal/mol (5862.2366 without restraints) Performing minimization step: 3507. Total energy = 5864.7844 kcal/mol (5861.2596 without restraints) Performing minimization step: 3508. Total energy = 5863.8074 kcal/mol (5860.2836 without restraints) Performing minimization step: 3509. Total energy = 5862.8313 kcal/mol (5859.3085 without restraints) Performing minimization step: 3510. Total energy = 5861.8557 kcal/mol (5858.3338 without restraints) Performing minimization step: 3511. Total energy = 5860.8815 kcal/mol (5857.3607 without restraints) Performing minimization step: 3512. Total energy = 5859.9081 kcal/mol (5856.3882 without restraints) Performing minimization step: 3513. Total energy = 5858.9351 kcal/mol (5855.4163 without restraints) Performing minimization step: 3514. Total energy = 5857.9633 kcal/mol (5854.4454 without restraints) Performing minimization step: 3515. Total energy = 5856.9925 kcal/mol (5853.4756 without restraints) Performing minimization step: 3516. Total energy = 5856.0229 kcal/mol (5852.5069 without restraints) Performing minimization step: 3517. Total energy = 5855.0536 kcal/mol (5851.5387 without restraints) Performing minimization step: 3518. Total energy = 5854.0854 kcal/mol (5850.5714 without restraints) Performing minimization step: 3519. Total energy = 5853.1184 kcal/mol (5849.6054 without restraints) Performing minimization step: 3520. Total energy = 5852.1517 kcal/mol (5848.6395 without restraints) Performing minimization step: 3521. Total energy = 5851.1857 kcal/mol (5847.6746 without restraints) Performing minimization step: 3522. Total energy = 5850.2213 kcal/mol (5846.7113 without restraints) Performing minimization step: 3523. Total energy = 5849.2576 kcal/mol (5845.7485 without restraints) Performing minimization step: 3524. Total energy = 5848.2947 kcal/mol (5844.7867 without restraints) Performing minimization step: 3525. Total energy = 5847.3327 kcal/mol (5843.8255 without restraints) Performing minimization step: 3526. Total energy = 5846.3721 kcal/mol (5842.8660 without restraints) Performing minimization step: 3527. Total energy = 5845.4118 kcal/mol (5841.9066 without restraints) Performing minimization step: 3528. Total energy = 5844.4522 kcal/mol (5840.9480 without restraints) Performing minimization step: 3529. Total energy = 5843.4936 kcal/mol (5839.9904 without restraints) Performing minimization step: 3530. Total energy = 5842.5359 kcal/mol (5839.0336 without restraints) Performing minimization step: 3531. Total energy = 5841.5786 kcal/mol (5838.0773 without restraints) Performing minimization step: 3532. Total energy = 5840.6221 kcal/mol (5837.1216 without restraints) Performing minimization step: 3533. Total energy = 5839.6666 kcal/mol (5836.1672 without restraints) Performing minimization step: 3534. Total energy = 5838.7121 kcal/mol (5835.2135 without restraints) Performing minimization step: 3535. Total energy = 5837.7587 kcal/mol (5834.2612 without restraints) Performing minimization step: 3536. Total energy = 5836.8059 kcal/mol (5833.3094 without restraints) Performing minimization step: 3537. Total energy = 5835.8539 kcal/mol (5832.3582 without restraints) Performing minimization step: 3538. Total energy = 5834.9034 kcal/mol (5831.4088 without restraints) Performing minimization step: 3539. Total energy = 5833.9534 kcal/mol (5830.4598 without restraints) Performing minimization step: 3540. Total energy = 5833.0042 kcal/mol (5829.5116 without restraints) Performing minimization step: 3541. Total energy = 5832.0558 kcal/mol (5828.5641 without restraints) Performing minimization step: 3542. Total energy = 5831.1084 kcal/mol (5827.6177 without restraints) Performing minimization step: 3543. Total energy = 5830.1616 kcal/mol (5826.6718 without restraints) Performing minimization step: 3544. Total energy = 5829.2156 kcal/mol (5825.7267 without restraints) Performing minimization step: 3545. Total energy = 5828.2708 kcal/mol (5824.7830 without restraints) Performing minimization step: 3546. Total energy = 5827.3265 kcal/mol (5823.8396 without restraints) Performing minimization step: 3547. Total energy = 5826.3831 kcal/mol (5822.8972 without restraints) Performing minimization step: 3548. Total energy = 5825.4407 kcal/mol (5821.9557 without restraints) Performing minimization step: 3549. Total energy = 5824.4989 kcal/mol (5821.0149 without restraints) Performing minimization step: 3550. Total energy = 5823.5583 kcal/mol (5820.0754 without restraints) Performing minimization step: 3551. Total energy = 5822.6185 kcal/mol (5819.1363 without restraints) Performing minimization step: 3552. Total energy = 5821.6794 kcal/mol (5818.1982 without restraints) Performing minimization step: 3553. Total energy = 5820.7412 kcal/mol (5817.2611 without restraints) Performing minimization step: 3554. Total energy = 5819.8039 kcal/mol (5816.3247 without restraints) Performing minimization step: 3555. Total energy = 5818.8671 kcal/mol (5815.3888 without restraints) Performing minimization step: 3556. Total energy = 5817.9314 kcal/mol (5814.4542 without restraints) Performing minimization step: 3557. Total energy = 5816.9966 kcal/mol (5813.5202 without restraints) Performing minimization step: 3558. Total energy = 5816.0623 kcal/mol (5812.5869 without restraints) Performing minimization step: 3559. Total energy = 5815.1289 kcal/mol (5811.6544 without restraints) Performing minimization step: 3560. Total energy = 5814.1962 kcal/mol (5810.7227 without restraints) Performing minimization step: 3561. Total energy = 5813.2644 kcal/mol (5809.7918 without restraints) Performing minimization step: 3562. Total energy = 5812.3332 kcal/mol (5808.8617 without restraints) Performing minimization step: 3563. Total energy = 5811.4031 kcal/mol (5807.9325 without restraints) Performing minimization step: 3564. Total energy = 5810.4737 kcal/mol (5807.0040 without restraints) Performing minimization step: 3565. Total energy = 5809.5452 kcal/mol (5806.0764 without restraints) Performing minimization step: 3566. Total energy = 5808.6178 kcal/mol (5805.1501 without restraints) Performing minimization step: 3567. Total energy = 5807.6908 kcal/mol (5804.2239 without restraints) Performing minimization step: 3568. Total energy = 5806.7647 kcal/mol (5803.2989 without restraints) Performing minimization step: 3569. Total energy = 5805.8403 kcal/mol (5802.3755 without restraints) Performing minimization step: 3570. Total energy = 5804.9160 kcal/mol (5801.4520 without restraints) Performing minimization step: 3571. Total energy = 5803.9929 kcal/mol (5800.5300 without restraints) Performing minimization step: 3572. Total energy = 5803.0702 kcal/mol (5799.6081 without restraints) Performing minimization step: 3573. Total energy = 5802.1484 kcal/mol (5798.6872 without restraints) Performing minimization step: 3574. Total energy = 5801.2271 kcal/mol (5797.7669 without restraints) Performing minimization step: 3575. Total energy = 5800.3066 kcal/mol (5796.8474 without restraints) Performing minimization step: 3576. Total energy = 5799.3871 kcal/mol (5795.9287 without restraints) Performing minimization step: 3577. Total energy = 5798.4686 kcal/mol (5795.0113 without restraints) Performing minimization step: 3578. Total energy = 5797.5510 kcal/mol (5794.0946 without restraints) Performing minimization step: 3579. Total energy = 5796.6346 kcal/mol (5793.1790 without restraints) Performing minimization step: 3580. Total energy = 5795.7182 kcal/mol (5792.2637 without restraints) Performing minimization step: 3581. Total energy = 5794.8029 kcal/mol (5791.3496 without restraints) Performing minimization step: 3582. Total energy = 5793.8885 kcal/mol (5790.4358 without restraints) Performing minimization step: 3583. Total energy = 5792.9750 kcal/mol (5789.5233 without restraints) Performing minimization step: 3584. Total energy = 5792.0626 kcal/mol (5788.6120 without restraints) Performing minimization step: 3585. Total energy = 5791.1506 kcal/mol (5787.7008 without restraints) Performing minimization step: 3586. Total energy = 5790.2389 kcal/mol (5786.7900 without restraints) Performing minimization step: 3587. Total energy = 5789.3277 kcal/mol (5785.8797 without restraints) Performing minimization step: 3588. Total energy = 5788.4178 kcal/mol (5784.9708 without restraints) Performing minimization step: 3589. Total energy = 5787.5086 kcal/mol (5784.0625 without restraints) Performing minimization step: 3590. Total energy = 5786.6001 kcal/mol (5783.1549 without restraints) Performing minimization step: 3591. Total energy = 5785.6929 kcal/mol (5782.2488 without restraints) Performing minimization step: 3592. Total energy = 5784.7863 kcal/mol (5781.3430 without restraints) Performing minimization step: 3593. Total energy = 5783.8807 kcal/mol (5780.4384 without restraints) Performing minimization step: 3594. Total energy = 5782.9754 kcal/mol (5779.5340 without restraints) Performing minimization step: 3595. Total energy = 5782.0709 kcal/mol (5778.6306 without restraints) Performing minimization step: 3596. Total energy = 5781.1674 kcal/mol (5777.7279 without restraints) Performing minimization step: 3597. Total energy = 5780.2643 kcal/mol (5776.8257 without restraints) Performing minimization step: 3598. Total energy = 5779.3621 kcal/mol (5775.9245 without restraints) Performing minimization step: 3599. Total energy = 5778.4609 kcal/mol (5775.0242 without restraints) Performing minimization step: 3600. Total energy = 5777.5602 kcal/mol (5774.1244 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 5776.6605 kcal/mol (5773.2257 without restraints) Performing minimization step: 3602. Total energy = 5775.7615 kcal/mol (5772.3276 without restraints) Performing minimization step: 3603. Total energy = 5774.8633 kcal/mol (5771.4304 without restraints) Performing minimization step: 3604. Total energy = 5773.9657 kcal/mol (5770.5335 without restraints) Performing minimization step: 3605. Total energy = 5773.0687 kcal/mol (5769.6376 without restraints) Performing minimization step: 3606. Total energy = 5772.1728 kcal/mol (5768.7426 without restraints) Performing minimization step: 3607. Total energy = 5771.2772 kcal/mol (5767.8480 without restraints) Performing minimization step: 3608. Total energy = 5770.3828 kcal/mol (5766.9545 without restraints) Performing minimization step: 3609. Total energy = 5769.4889 kcal/mol (5766.0615 without restraints) Performing minimization step: 3610. Total energy = 5768.5961 kcal/mol (5765.1696 without restraints) Performing minimization step: 3611. Total energy = 5767.7043 kcal/mol (5764.2789 without restraints) Performing minimization step: 3612. Total energy = 5766.8129 kcal/mol (5763.3883 without restraints) Performing minimization step: 3613. Total energy = 5765.9225 kcal/mol (5762.4989 without restraints) Performing minimization step: 3614. Total energy = 5765.0329 kcal/mol (5761.6101 without restraints) Performing minimization step: 3615. Total energy = 5764.1438 kcal/mol (5760.7220 without restraints) Performing minimization step: 3616. Total energy = 5763.2553 kcal/mol (5759.8344 without restraints) Performing minimization step: 3617. Total energy = 5762.3676 kcal/mol (5758.9476 without restraints) Performing minimization step: 3618. Total energy = 5761.4804 kcal/mol (5758.0614 without restraints) Performing minimization step: 3619. Total energy = 5760.5946 kcal/mol (5757.1764 without restraints) Performing minimization step: 3620. Total energy = 5759.7093 kcal/mol (5756.2923 without restraints) Performing minimization step: 3621. Total energy = 5758.8250 kcal/mol (5755.4087 without restraints) Performing minimization step: 3622. Total energy = 5757.9412 kcal/mol (5754.5258 without restraints) Performing minimization step: 3623. Total energy = 5757.0578 kcal/mol (5753.6433 without restraints) Performing minimization step: 3624. Total energy = 5756.1754 kcal/mol (5752.7620 without restraints) Performing minimization step: 3625. Total energy = 5755.2938 kcal/mol (5751.8812 without restraints) Performing minimization step: 3626. Total energy = 5754.4132 kcal/mol (5751.0016 without restraints) Performing minimization step: 3627. Total energy = 5753.5331 kcal/mol (5750.1223 without restraints) Performing minimization step: 3628. Total energy = 5752.6536 kcal/mol (5749.2437 without restraints) Performing minimization step: 3629. Total energy = 5751.7750 kcal/mol (5748.3661 without restraints) Performing minimization step: 3630. Total energy = 5750.8968 kcal/mol (5747.4888 without restraints) Performing minimization step: 3631. Total energy = 5750.0195 kcal/mol (5746.6124 without restraints) Performing minimization step: 3632. Total energy = 5749.1435 kcal/mol (5745.7376 without restraints) Performing minimization step: 3633. Total energy = 5748.2677 kcal/mol (5744.8625 without restraints) Performing minimization step: 3634. Total energy = 5747.3930 kcal/mol (5743.9886 without restraints) Performing minimization step: 3635. Total energy = 5746.5189 kcal/mol (5743.1155 without restraints) Performing minimization step: 3636. Total energy = 5745.6461 kcal/mol (5742.2436 without restraints) Performing minimization step: 3637. Total energy = 5744.7731 kcal/mol (5741.3715 without restraints) Performing minimization step: 3638. Total energy = 5743.9010 kcal/mol (5740.5003 without restraints) Performing minimization step: 3639. Total energy = 5743.0295 kcal/mol (5739.6296 without restraints) Performing minimization step: 3640. Total energy = 5742.1589 kcal/mol (5738.7601 without restraints) Performing minimization step: 3641. Total energy = 5741.2894 kcal/mol (5737.8915 without restraints) Performing minimization step: 3642. Total energy = 5740.4203 kcal/mol (5737.0233 without restraints) Performing minimization step: 3643. Total energy = 5739.5519 kcal/mol (5736.1557 without restraints) Performing minimization step: 3644. Total energy = 5738.6846 kcal/mol (5735.2894 without restraints) Performing minimization step: 3645. Total energy = 5737.8175 kcal/mol (5734.4232 without restraints) Performing minimization step: 3646. Total energy = 5736.9513 kcal/mol (5733.5581 without restraints) Performing minimization step: 3647. Total energy = 5736.0862 kcal/mol (5732.6937 without restraints) Performing minimization step: 3648. Total energy = 5735.2213 kcal/mol (5731.8298 without restraints) Performing minimization step: 3649. Total energy = 5734.3572 kcal/mol (5730.9665 without restraints) Performing minimization step: 3650. Total energy = 5733.4938 kcal/mol (5730.1041 without restraints) Performing minimization step: 3651. Total energy = 5732.6311 kcal/mol (5729.2423 without restraints) Performing minimization step: 3652. Total energy = 5731.7692 kcal/mol (5728.3812 without restraints) Performing minimization step: 3653. Total energy = 5730.9080 kcal/mol (5727.5210 without restraints) Performing minimization step: 3654. Total energy = 5730.0484 kcal/mol (5726.6623 without restraints) Performing minimization step: 3655. Total energy = 5729.1886 kcal/mol (5725.8034 without restraints) Performing minimization step: 3656. Total energy = 5728.3297 kcal/mol (5724.9454 without restraints) Performing minimization step: 3657. Total energy = 5727.4714 kcal/mol (5724.0880 without restraints) Performing minimization step: 3658. Total energy = 5726.6141 kcal/mol (5723.2317 without restraints) Performing minimization step: 3659. Total energy = 5725.7576 kcal/mol (5722.3762 without restraints) Performing minimization step: 3660. Total energy = 5724.9016 kcal/mol (5721.5210 without restraints) Performing minimization step: 3661. Total energy = 5724.0462 kcal/mol (5720.6664 without restraints) Performing minimization step: 3662. Total energy = 5723.1915 kcal/mol (5719.8127 without restraints) Performing minimization step: 3663. Total energy = 5722.3377 kcal/mol (5718.9599 without restraints) Performing minimization step: 3664. Total energy = 5721.4846 kcal/mol (5718.1075 without restraints) Performing minimization step: 3665. Total energy = 5720.6323 kcal/mol (5717.2562 without restraints) Performing minimization step: 3666. Total energy = 5719.7804 kcal/mol (5716.4051 without restraints) Performing minimization step: 3667. Total energy = 5718.9295 kcal/mol (5715.5551 without restraints) Performing minimization step: 3668. Total energy = 5718.0789 kcal/mol (5714.7054 without restraints) Performing minimization step: 3669. Total energy = 5717.2290 kcal/mol (5713.8564 without restraints) Performing minimization step: 3670. Total energy = 5716.3800 kcal/mol (5713.0083 without restraints) Performing minimization step: 3671. Total energy = 5715.5315 kcal/mol (5712.1607 without restraints) Performing minimization step: 3672. Total energy = 5714.6840 kcal/mol (5711.3141 without restraints) Performing minimization step: 3673. Total energy = 5713.8375 kcal/mol (5710.4687 without restraints) Performing minimization step: 3674. Total energy = 5712.9916 kcal/mol (5709.6235 without restraints) Performing minimization step: 3675. Total energy = 5712.1459 kcal/mol (5708.7786 without restraints) Performing minimization step: 3676. Total energy = 5711.3009 kcal/mol (5707.9346 without restraints) Performing minimization step: 3677. Total energy = 5710.4566 kcal/mol (5707.0911 without restraints) Performing minimization step: 3678. Total energy = 5709.6129 kcal/mol (5706.2484 without restraints) Performing minimization step: 3679. Total energy = 5708.7702 kcal/mol (5705.4066 without restraints) Performing minimization step: 3680. Total energy = 5707.9285 kcal/mol (5704.5659 without restraints) Performing minimization step: 3681. Total energy = 5707.0866 kcal/mol (5703.7248 without restraints) Performing minimization step: 3682. Total energy = 5706.2458 kcal/mol (5702.8848 without restraints) Performing minimization step: 3683. Total energy = 5705.4055 kcal/mol (5702.0455 without restraints) Performing minimization step: 3684. Total energy = 5704.5663 kcal/mol (5701.2071 without restraints) Performing minimization step: 3685. Total energy = 5703.7277 kcal/mol (5700.3694 without restraints) Performing minimization step: 3686. Total energy = 5702.8896 kcal/mol (5699.5322 without restraints) Performing minimization step: 3687. Total energy = 5702.0520 kcal/mol (5698.6955 without restraints) Performing minimization step: 3688. Total energy = 5701.2155 kcal/mol (5697.8599 without restraints) Performing minimization step: 3689. Total energy = 5700.3798 kcal/mol (5697.0252 without restraints) Performing minimization step: 3690. Total energy = 5699.5450 kcal/mol (5696.1911 without restraints) Performing minimization step: 3691. Total energy = 5698.7105 kcal/mol (5695.3576 without restraints) Performing minimization step: 3692. Total energy = 5697.8765 kcal/mol (5694.5245 without restraints) Performing minimization step: 3693. Total energy = 5697.0432 kcal/mol (5693.6920 without restraints) Performing minimization step: 3694. Total energy = 5696.2108 kcal/mol (5692.8605 without restraints) Performing minimization step: 3695. Total energy = 5695.3792 kcal/mol (5692.0301 without restraints) Performing minimization step: 3696. Total energy = 5694.5479 kcal/mol (5691.1994 without restraints) Performing minimization step: 3697. Total energy = 5693.7175 kcal/mol (5690.3699 without restraints) Performing minimization step: 3698. Total energy = 5692.8877 kcal/mol (5689.5411 without restraints) Performing minimization step: 3699. Total energy = 5692.0586 kcal/mol (5688.7129 without restraints) Performing minimization step: 3700. Total energy = 5691.2306 kcal/mol (5687.8856 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 5690.4029 kcal/mol (5687.0590 without restraints) Performing minimization step: 3702. Total energy = 5689.5760 kcal/mol (5686.2331 without restraints) Performing minimization step: 3703. Total energy = 5688.7498 kcal/mol (5685.4076 without restraints) Performing minimization step: 3704. Total energy = 5687.9242 kcal/mol (5684.5828 without restraints) Performing minimization step: 3705. Total energy = 5687.0986 kcal/mol (5683.7582 without restraints) Performing minimization step: 3706. Total energy = 5686.2744 kcal/mol (5682.9347 without restraints) Performing minimization step: 3707. Total energy = 5685.4507 kcal/mol (5682.1119 without restraints) Performing minimization step: 3708. Total energy = 5684.6272 kcal/mol (5681.2893 without restraints) Performing minimization step: 3709. Total energy = 5683.8049 kcal/mol (5680.4679 without restraints) Performing minimization step: 3710. Total energy = 5682.9832 kcal/mol (5679.6471 without restraints) Performing minimization step: 3711. Total energy = 5682.1620 kcal/mol (5678.8267 without restraints) Performing minimization step: 3712. Total energy = 5681.3417 kcal/mol (5678.0074 without restraints) Performing minimization step: 3713. Total energy = 5680.5225 kcal/mol (5677.1890 without restraints) Performing minimization step: 3714. Total energy = 5679.7032 kcal/mol (5676.3706 without restraints) Performing minimization step: 3715. Total energy = 5678.8848 kcal/mol (5675.5531 without restraints) Performing minimization step: 3716. Total energy = 5678.0669 kcal/mol (5674.7360 without restraints) Performing minimization step: 3717. Total energy = 5677.2499 kcal/mol (5673.9199 without restraints) Performing minimization step: 3718. Total energy = 5676.4333 kcal/mol (5673.1042 without restraints) Performing minimization step: 3719. Total energy = 5675.6173 kcal/mol (5672.2890 without restraints) Performing minimization step: 3720. Total energy = 5674.8024 kcal/mol (5671.4750 without restraints) Performing minimization step: 3721. Total energy = 5673.9877 kcal/mol (5670.6612 without restraints) Performing minimization step: 3722. Total energy = 5673.1737 kcal/mol (5669.8481 without restraints) Performing minimization step: 3723. Total energy = 5672.3613 kcal/mol (5669.0366 without restraints) Performing minimization step: 3724. Total energy = 5671.5489 kcal/mol (5668.2251 without restraints) Performing minimization step: 3725. Total energy = 5670.7370 kcal/mol (5667.4141 without restraints) Performing minimization step: 3726. Total energy = 5669.9254 kcal/mol (5666.6033 without restraints) Performing minimization step: 3727. Total energy = 5669.1147 kcal/mol (5665.7936 without restraints) Performing minimization step: 3728. Total energy = 5668.3049 kcal/mol (5664.9848 without restraints) Performing minimization step: 3729. Total energy = 5667.4955 kcal/mol (5664.1760 without restraints) Performing minimization step: 3730. Total energy = 5666.6868 kcal/mol (5663.3682 without restraints) Performing minimization step: 3731. Total energy = 5665.8789 kcal/mol (5662.5612 without restraints) Performing minimization step: 3732. Total energy = 5665.0712 kcal/mol (5661.7543 without restraints) Performing minimization step: 3733. Total energy = 5664.2645 kcal/mol (5660.9485 without restraints) Performing minimization step: 3734. Total energy = 5663.4584 kcal/mol (5660.1433 without restraints) Performing minimization step: 3735. Total energy = 5662.6531 kcal/mol (5659.3389 without restraints) Performing minimization step: 3736. Total energy = 5661.8484 kcal/mol (5658.5350 without restraints) Performing minimization step: 3737. Total energy = 5661.0445 kcal/mol (5657.7320 without restraints) Performing minimization step: 3738. Total energy = 5660.2409 kcal/mol (5656.9292 without restraints) Performing minimization step: 3739. Total energy = 5659.4379 kcal/mol (5656.1271 without restraints) Performing minimization step: 3740. Total energy = 5658.6362 kcal/mol (5655.3263 without restraints) Performing minimization step: 3741. Total energy = 5657.8344 kcal/mol (5654.5254 without restraints) Performing minimization step: 3742. Total energy = 5657.0332 kcal/mol (5653.7250 without restraints) Performing minimization step: 3743. Total energy = 5656.2329 kcal/mol (5652.9256 without restraints) Performing minimization step: 3744. Total energy = 5655.4333 kcal/mol (5652.1270 without restraints) Performing minimization step: 3745. Total energy = 5654.6344 kcal/mol (5651.3288 without restraints) Performing minimization step: 3746. Total energy = 5653.8362 kcal/mol (5650.5314 without restraints) Performing minimization step: 3747. Total energy = 5653.0385 kcal/mol (5649.7346 without restraints) Performing minimization step: 3748. Total energy = 5652.2413 kcal/mol (5648.9383 without restraints) Performing minimization step: 3749. Total energy = 5651.4447 kcal/mol (5648.1426 without restraints) Performing minimization step: 3750. Total energy = 5650.6489 kcal/mol (5647.3476 without restraints) Performing minimization step: 3751. Total energy = 5649.8535 kcal/mol (5646.5530 without restraints) Performing minimization step: 3752. Total energy = 5649.0593 kcal/mol (5645.7599 without restraints) Performing minimization step: 3753. Total energy = 5648.2653 kcal/mol (5644.9666 without restraints) Performing minimization step: 3754. Total energy = 5647.4717 kcal/mol (5644.1739 without restraints) Performing minimization step: 3755. Total energy = 5646.6790 kcal/mol (5643.3820 without restraints) Performing minimization step: 3756. Total energy = 5645.8869 kcal/mol (5642.5908 without restraints) Performing minimization step: 3757. Total energy = 5645.0956 kcal/mol (5641.8004 without restraints) Performing minimization step: 3758. Total energy = 5644.3050 kcal/mol (5641.0108 without restraints) Performing minimization step: 3759. Total energy = 5643.5152 kcal/mol (5640.2216 without restraints) Performing minimization step: 3760. Total energy = 5642.7253 kcal/mol (5639.4326 without restraints) Performing minimization step: 3761. Total energy = 5641.9367 kcal/mol (5638.6449 without restraints) Performing minimization step: 3762. Total energy = 5641.1483 kcal/mol (5637.8574 without restraints) Performing minimization step: 3763. Total energy = 5640.3608 kcal/mol (5637.0709 without restraints) Performing minimization step: 3764. Total energy = 5639.5737 kcal/mol (5636.2844 without restraints) Performing minimization step: 3765. Total energy = 5638.7869 kcal/mol (5635.4985 without restraints) Performing minimization step: 3766. Total energy = 5638.0009 kcal/mol (5634.7134 without restraints) Performing minimization step: 3767. Total energy = 5637.2159 kcal/mol (5633.9294 without restraints) Performing minimization step: 3768. Total energy = 5636.4311 kcal/mol (5633.1452 without restraints) Performing minimization step: 3769. Total energy = 5635.6467 kcal/mol (5632.3617 without restraints) Performing minimization step: 3770. Total energy = 5634.8626 kcal/mol (5631.5785 without restraints) Performing minimization step: 3771. Total energy = 5634.0796 kcal/mol (5630.7963 without restraints) Performing minimization step: 3772. Total energy = 5633.2974 kcal/mol (5630.0151 without restraints) Performing minimization step: 3773. Total energy = 5632.5160 kcal/mol (5629.2345 without restraints) Performing minimization step: 3774. Total energy = 5631.7351 kcal/mol (5628.4544 without restraints) Performing minimization step: 3775. Total energy = 5630.9547 kcal/mol (5627.6751 without restraints) Performing minimization step: 3776. Total energy = 5630.1751 kcal/mol (5626.8962 without restraints) Performing minimization step: 3777. Total energy = 5629.3959 kcal/mol (5626.1177 without restraints) Performing minimization step: 3778. Total energy = 5628.6176 kcal/mol (5625.3403 without restraints) Performing minimization step: 3779. Total energy = 5627.8395 kcal/mol (5624.5630 without restraints) Performing minimization step: 3780. Total energy = 5627.0620 kcal/mol (5623.7866 without restraints) Performing minimization step: 3781. Total energy = 5626.2852 kcal/mol (5623.0105 without restraints) Performing minimization step: 3782. Total energy = 5625.5093 kcal/mol (5622.2354 without restraints) Performing minimization step: 3783. Total energy = 5624.7338 kcal/mol (5621.4607 without restraints) Performing minimization step: 3784. Total energy = 5623.9586 kcal/mol (5620.6864 without restraints) Performing minimization step: 3785. Total energy = 5623.1842 kcal/mol (5619.9129 without restraints) Performing minimization step: 3786. Total energy = 5622.4103 kcal/mol (5619.1401 without restraints) Performing minimization step: 3787. Total energy = 5621.6376 kcal/mol (5618.3680 without restraints) Performing minimization step: 3788. Total energy = 5620.8652 kcal/mol (5617.5964 without restraints) Performing minimization step: 3789. Total energy = 5620.0936 kcal/mol (5616.8257 without restraints) Performing minimization step: 3790. Total energy = 5619.3222 kcal/mol (5616.0551 without restraints) Performing minimization step: 3791. Total energy = 5618.5519 kcal/mol (5615.2857 without restraints) Performing minimization step: 3792. Total energy = 5617.7814 kcal/mol (5614.5160 without restraints) Performing minimization step: 3793. Total energy = 5617.0114 kcal/mol (5613.7468 without restraints) Performing minimization step: 3794. Total energy = 5616.2426 kcal/mol (5612.9788 without restraints) Performing minimization step: 3795. Total energy = 5615.4739 kcal/mol (5612.2111 without restraints) Performing minimization step: 3796. Total energy = 5614.7060 kcal/mol (5611.4440 without restraints) Performing minimization step: 3797. Total energy = 5613.9387 kcal/mol (5610.6775 without restraints) Performing minimization step: 3798. Total energy = 5613.1723 kcal/mol (5609.9120 without restraints) Performing minimization step: 3799. Total energy = 5612.4062 kcal/mol (5609.1467 without restraints) Performing minimization step: 3800. Total energy = 5611.6409 kcal/mol (5608.3823 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 5610.8760 kcal/mol (5607.6183 without restraints) Performing minimization step: 3802. Total energy = 5610.1119 kcal/mol (5606.8549 without restraints) Performing minimization step: 3803. Total energy = 5609.3486 kcal/mol (5606.0926 without restraints) Performing minimization step: 3804. Total energy = 5608.5857 kcal/mol (5605.3305 without restraints) Performing minimization step: 3805. Total energy = 5607.8235 kcal/mol (5604.5691 without restraints) Performing minimization step: 3806. Total energy = 5607.0616 kcal/mol (5603.8081 without restraints) Performing minimization step: 3807. Total energy = 5606.3002 kcal/mol (5603.0474 without restraints) Performing minimization step: 3808. Total energy = 5605.5400 kcal/mol (5602.2880 without restraints) Performing minimization step: 3809. Total energy = 5604.7799 kcal/mol (5601.5289 without restraints) Performing minimization step: 3810. Total energy = 5604.0202 kcal/mol (5600.7700 without restraints) Performing minimization step: 3811. Total energy = 5603.2609 kcal/mol (5600.0115 without restraints) Performing minimization step: 3812. Total energy = 5602.5026 kcal/mol (5599.2540 without restraints) Performing minimization step: 3813. Total energy = 5601.7449 kcal/mol (5598.4972 without restraints) Performing minimization step: 3814. Total energy = 5600.9882 kcal/mol (5597.7414 without restraints) Performing minimization step: 3815. Total energy = 5600.2318 kcal/mol (5596.9857 without restraints) Performing minimization step: 3816. Total energy = 5599.4760 kcal/mol (5596.2308 without restraints) Performing minimization step: 3817. Total energy = 5598.7204 kcal/mol (5595.4760 without restraints) Performing minimization step: 3818. Total energy = 5597.9658 kcal/mol (5594.7222 without restraints) Performing minimization step: 3819. Total energy = 5597.2118 kcal/mol (5593.9691 without restraints) Performing minimization step: 3820. Total energy = 5596.4580 kcal/mol (5593.2162 without restraints) Performing minimization step: 3821. Total energy = 5595.7049 kcal/mol (5592.4638 without restraints) Performing minimization step: 3822. Total energy = 5594.9526 kcal/mol (5591.7124 without restraints) Performing minimization step: 3823. Total energy = 5594.2006 kcal/mol (5590.9612 without restraints) Performing minimization step: 3824. Total energy = 5593.4494 kcal/mol (5590.2109 without restraints) Performing minimization step: 3825. Total energy = 5592.6985 kcal/mol (5589.4608 without restraints) Performing minimization step: 3826. Total energy = 5591.9482 kcal/mol (5588.7113 without restraints) Performing minimization step: 3827. Total energy = 5591.1985 kcal/mol (5587.9624 without restraints) Performing minimization step: 3828. Total energy = 5590.4493 kcal/mol (5587.2140 without restraints) Performing minimization step: 3829. Total energy = 5589.7007 kcal/mol (5586.4663 without restraints) Performing minimization step: 3830. Total energy = 5588.9527 kcal/mol (5585.7191 without restraints) Performing minimization step: 3831. Total energy = 5588.2051 kcal/mol (5584.9723 without restraints) Performing minimization step: 3832. Total energy = 5587.4579 kcal/mol (5584.2260 without restraints) Performing minimization step: 3833. Total energy = 5586.7120 kcal/mol (5583.4810 without restraints) Performing minimization step: 3834. Total energy = 5585.9664 kcal/mol (5582.7363 without restraints) Performing minimization step: 3835. Total energy = 5585.2215 kcal/mol (5581.9920 without restraints) Performing minimization step: 3836. Total energy = 5584.4774 kcal/mol (5581.2488 without restraints) Performing minimization step: 3837. Total energy = 5583.7332 kcal/mol (5580.5055 without restraints) Performing minimization step: 3838. Total energy = 5582.9893 kcal/mol (5579.7624 without restraints) Performing minimization step: 3839. Total energy = 5582.2462 kcal/mol (5579.0203 without restraints) Performing minimization step: 3840. Total energy = 5581.5042 kcal/mol (5578.2789 without restraints) Performing minimization step: 3841. Total energy = 5580.7624 kcal/mol (5577.5379 without restraints) Performing minimization step: 3842. Total energy = 5580.0213 kcal/mol (5576.7977 without restraints) Performing minimization step: 3843. Total energy = 5579.2807 kcal/mol (5576.0579 without restraints) Performing minimization step: 3844. Total energy = 5578.5405 kcal/mol (5575.3185 without restraints) Performing minimization step: 3845. Total energy = 5577.8013 kcal/mol (5574.5801 without restraints) Performing minimization step: 3846. Total energy = 5577.0625 kcal/mol (5573.8422 without restraints) Performing minimization step: 3847. Total energy = 5576.3242 kcal/mol (5573.1047 without restraints) Performing minimization step: 3848. Total energy = 5575.5866 kcal/mol (5572.3681 without restraints) Performing minimization step: 3849. Total energy = 5574.8492 kcal/mol (5571.6313 without restraints) Performing minimization step: 3850. Total energy = 5574.1122 kcal/mol (5570.8952 without restraints) Performing minimization step: 3851. Total energy = 5573.3761 kcal/mol (5570.1600 without restraints) Performing minimization step: 3852. Total energy = 5572.6406 kcal/mol (5569.4252 without restraints) Performing minimization step: 3853. Total energy = 5571.9056 kcal/mol (5568.6911 without restraints) Performing minimization step: 3854. Total energy = 5571.1709 kcal/mol (5567.9572 without restraints) Performing minimization step: 3855. Total energy = 5570.4365 kcal/mol (5567.2235 without restraints) Performing minimization step: 3856. Total energy = 5569.7029 kcal/mol (5566.4909 without restraints) Performing minimization step: 3857. Total energy = 5568.9707 kcal/mol (5565.7595 without restraints) Performing minimization step: 3858. Total energy = 5568.2384 kcal/mol (5565.0279 without restraints) Performing minimization step: 3859. Total energy = 5567.5063 kcal/mol (5564.2966 without restraints) Performing minimization step: 3860. Total energy = 5566.7749 kcal/mol (5563.5661 without restraints) Performing minimization step: 3861. Total energy = 5566.0443 kcal/mol (5562.8363 without restraints) Performing minimization step: 3862. Total energy = 5565.3144 kcal/mol (5562.1071 without restraints) Performing minimization step: 3863. Total energy = 5564.5847 kcal/mol (5561.3785 without restraints) Performing minimization step: 3864. Total energy = 5563.8561 kcal/mol (5560.6505 without restraints) Performing minimization step: 3865. Total energy = 5563.1275 kcal/mol (5559.9228 without restraints) Performing minimization step: 3866. Total energy = 5562.3988 kcal/mol (5559.1950 without restraints) Performing minimization step: 3867. Total energy = 5561.6713 kcal/mol (5558.4683 without restraints) Performing minimization step: 3868. Total energy = 5560.9448 kcal/mol (5557.7426 without restraints) Performing minimization step: 3869. Total energy = 5560.2185 kcal/mol (5557.0170 without restraints) Performing minimization step: 3870. Total energy = 5559.4928 kcal/mol (5556.2922 without restraints) Performing minimization step: 3871. Total energy = 5558.7682 kcal/mol (5555.5684 without restraints) Performing minimization step: 3872. Total energy = 5558.0431 kcal/mol (5554.8441 without restraints) Performing minimization step: 3873. Total energy = 5557.3187 kcal/mol (5554.1205 without restraints) Performing minimization step: 3874. Total energy = 5556.5954 kcal/mol (5553.3981 without restraints) Performing minimization step: 3875. Total energy = 5555.8722 kcal/mol (5552.6757 without restraints) Performing minimization step: 3876. Total energy = 5555.1496 kcal/mol (5551.9539 without restraints) Performing minimization step: 3877. Total energy = 5554.4276 kcal/mol (5551.2328 without restraints) Performing minimization step: 3878. Total energy = 5553.7062 kcal/mol (5550.5121 without restraints) Performing minimization step: 3879. Total energy = 5552.9852 kcal/mol (5549.7919 without restraints) Performing minimization step: 3880. Total energy = 5552.2648 kcal/mol (5549.0724 without restraints) Performing minimization step: 3881. Total energy = 5551.5452 kcal/mol (5548.3535 without restraints) Performing minimization step: 3882. Total energy = 5550.8258 kcal/mol (5547.6350 without restraints) Performing minimization step: 3883. Total energy = 5550.1070 kcal/mol (5546.9170 without restraints) Performing minimization step: 3884. Total energy = 5549.3887 kcal/mol (5546.1995 without restraints) Performing minimization step: 3885. Total energy = 5548.6711 kcal/mol (5545.4828 without restraints) Performing minimization step: 3886. Total energy = 5547.9538 kcal/mol (5544.7662 without restraints) Performing minimization step: 3887. Total energy = 5547.2377 kcal/mol (5544.0511 without restraints) Performing minimization step: 3888. Total energy = 5546.5218 kcal/mol (5543.3358 without restraints) Performing minimization step: 3889. Total energy = 5545.8065 kcal/mol (5542.6215 without restraints) Performing minimization step: 3890. Total energy = 5545.0919 kcal/mol (5541.9075 without restraints) Performing minimization step: 3891. Total energy = 5544.3773 kcal/mol (5541.1938 without restraints) Performing minimization step: 3892. Total energy = 5543.6625 kcal/mol (5540.4797 without restraints) Performing minimization step: 3893. Total energy = 5542.9493 kcal/mol (5539.7674 without restraints) Performing minimization step: 3894. Total energy = 5542.2364 kcal/mol (5539.0553 without restraints) Performing minimization step: 3895. Total energy = 5541.5246 kcal/mol (5538.3443 without restraints) Performing minimization step: 3896. Total energy = 5540.8129 kcal/mol (5537.6334 without restraints) Performing minimization step: 3897. Total energy = 5540.1018 kcal/mol (5536.9231 without restraints) Performing minimization step: 3898. Total energy = 5539.3909 kcal/mol (5536.2130 without restraints) Performing minimization step: 3899. Total energy = 5538.6807 kcal/mol (5535.5036 without restraints) Performing minimization step: 3900. Total energy = 5537.9709 kcal/mol (5534.7946 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 5537.2620 kcal/mol (5534.0867 without restraints) Performing minimization step: 3902. Total energy = 5536.5529 kcal/mol (5533.3781 without restraints) Performing minimization step: 3903. Total energy = 5535.8443 kcal/mol (5532.6705 without restraints) Performing minimization step: 3904. Total energy = 5535.1369 kcal/mol (5531.9639 without restraints) Performing minimization step: 3905. Total energy = 5534.4296 kcal/mol (5531.2573 without restraints) Performing minimization step: 3906. Total energy = 5533.7234 kcal/mol (5530.5521 without restraints) Performing minimization step: 3907. Total energy = 5533.0174 kcal/mol (5529.8468 without restraints) Performing minimization step: 3908. Total energy = 5532.3118 kcal/mol (5529.1419 without restraints) Performing minimization step: 3909. Total energy = 5531.6068 kcal/mol (5528.4378 without restraints) Performing minimization step: 3910. Total energy = 5530.9025 kcal/mol (5527.7343 without restraints) Performing minimization step: 3911. Total energy = 5530.1985 kcal/mol (5527.0311 without restraints) Performing minimization step: 3912. Total energy = 5529.4952 kcal/mol (5526.3286 without restraints) Performing minimization step: 3913. Total energy = 5528.7924 kcal/mol (5525.6266 without restraints) Performing minimization step: 3914. Total energy = 5528.0898 kcal/mol (5524.9249 without restraints) Performing minimization step: 3915. Total energy = 5527.3880 kcal/mol (5524.2238 without restraints) Performing minimization step: 3916. Total energy = 5526.6867 kcal/mol (5523.5234 without restraints) Performing minimization step: 3917. Total energy = 5525.9861 kcal/mol (5522.8235 without restraints) Performing minimization step: 3918. Total energy = 5525.2857 kcal/mol (5522.1240 without restraints) Performing minimization step: 3919. Total energy = 5524.5863 kcal/mol (5521.4253 without restraints) Performing minimization step: 3920. Total energy = 5523.8869 kcal/mol (5520.7266 without restraints) Performing minimization step: 3921. Total energy = 5523.1878 kcal/mol (5520.0284 without restraints) Performing minimization step: 3922. Total energy = 5522.4895 kcal/mol (5519.3310 without restraints) Performing minimization step: 3923. Total energy = 5521.7917 kcal/mol (5518.6340 without restraints) Performing minimization step: 3924. Total energy = 5521.0944 kcal/mol (5517.9374 without restraints) Performing minimization step: 3925. Total energy = 5520.3974 kcal/mol (5517.2411 without restraints) Performing minimization step: 3926. Total energy = 5519.7010 kcal/mol (5516.5456 without restraints) Performing minimization step: 3927. Total energy = 5519.0052 kcal/mol (5515.8506 without restraints) Performing minimization step: 3928. Total energy = 5518.3100 kcal/mol (5515.1562 without restraints) Performing minimization step: 3929. Total energy = 5517.6150 kcal/mol (5514.4620 without restraints) Performing minimization step: 3930. Total energy = 5516.9217 kcal/mol (5513.7696 without restraints) Performing minimization step: 3931. Total energy = 5516.2283 kcal/mol (5513.0769 without restraints) Performing minimization step: 3932. Total energy = 5515.5351 kcal/mol (5512.3845 without restraints) Performing minimization step: 3933. Total energy = 5514.8425 kcal/mol (5511.6928 without restraints) Performing minimization step: 3934. Total energy = 5514.1508 kcal/mol (5511.0018 without restraints) Performing minimization step: 3935. Total energy = 5513.4599 kcal/mol (5510.3119 without restraints) Performing minimization step: 3936. Total energy = 5512.7689 kcal/mol (5509.6215 without restraints) Performing minimization step: 3937. Total energy = 5512.0783 kcal/mol (5508.9317 without restraints) Performing minimization step: 3938. Total energy = 5511.3882 kcal/mol (5508.2423 without restraints) Performing minimization step: 3939. Total energy = 5510.6985 kcal/mol (5507.5535 without restraints) Performing minimization step: 3940. Total energy = 5510.0096 kcal/mol (5506.8653 without restraints) Performing minimization step: 3941. Total energy = 5509.3209 kcal/mol (5506.1775 without restraints) Performing minimization step: 3942. Total energy = 5508.6336 kcal/mol (5505.4910 without restraints) Performing minimization step: 3943. Total energy = 5507.9462 kcal/mol (5504.8044 without restraints) Performing minimization step: 3944. Total energy = 5507.2596 kcal/mol (5504.1186 without restraints) Performing minimization step: 3945. Total energy = 5506.5736 kcal/mol (5503.4333 without restraints) Performing minimization step: 3946. Total energy = 5505.8873 kcal/mol (5502.7478 without restraints) Performing minimization step: 3947. Total energy = 5505.2013 kcal/mol (5502.0625 without restraints) Performing minimization step: 3948. Total energy = 5504.5162 kcal/mol (5501.3783 without restraints) Performing minimization step: 3949. Total energy = 5503.8317 kcal/mol (5500.6946 without restraints) Performing minimization step: 3950. Total energy = 5503.1476 kcal/mol (5500.0113 without restraints) Performing minimization step: 3951. Total energy = 5502.4639 kcal/mol (5499.3284 without restraints) Performing minimization step: 3952. Total energy = 5501.7809 kcal/mol (5498.6460 without restraints) Performing minimization step: 3953. Total energy = 5501.0986 kcal/mol (5497.9648 without restraints) Performing minimization step: 3954. Total energy = 5500.4165 kcal/mol (5497.2834 without restraints) Performing minimization step: 3955. Total energy = 5499.7350 kcal/mol (5496.6026 without restraints) Performing minimization step: 3956. Total energy = 5499.0542 kcal/mol (5495.9226 without restraints) Performing minimization step: 3957. Total energy = 5498.3740 kcal/mol (5495.2434 without restraints) Performing minimization step: 3958. Total energy = 5497.6938 kcal/mol (5494.5638 without restraints) Performing minimization step: 3959. Total energy = 5497.0142 kcal/mol (5493.8850 without restraints) Performing minimization step: 3960. Total energy = 5496.3350 kcal/mol (5493.2066 without restraints) Performing minimization step: 3961. Total energy = 5495.6561 kcal/mol (5492.5285 without restraints) Performing minimization step: 3962. Total energy = 5494.9780 kcal/mol (5491.8511 without restraints) Performing minimization step: 3963. Total energy = 5494.3002 kcal/mol (5491.1742 without restraints) Performing minimization step: 3964. Total energy = 5493.6239 kcal/mol (5490.4988 without restraints) Performing minimization step: 3965. Total energy = 5492.9478 kcal/mol (5489.8234 without restraints) Performing minimization step: 3966. Total energy = 5492.2718 kcal/mol (5489.1481 without restraints) Performing minimization step: 3967. Total energy = 5491.5969 kcal/mol (5488.4743 without restraints) Performing minimization step: 3968. Total energy = 5490.9222 kcal/mol (5487.8001 without restraints) Performing minimization step: 3969. Total energy = 5490.2471 kcal/mol (5487.1257 without restraints) Performing minimization step: 3970. Total energy = 5489.5726 kcal/mol (5486.4520 without restraints) Performing minimization step: 3971. Total energy = 5488.8989 kcal/mol (5485.7791 without restraints) Performing minimization step: 3972. Total energy = 5488.2259 kcal/mol (5485.1070 without restraints) Performing minimization step: 3973. Total energy = 5487.5534 kcal/mol (5484.4352 without restraints) Performing minimization step: 3974. Total energy = 5486.8812 kcal/mol (5483.7639 without restraints) Performing minimization step: 3975. Total energy = 5486.2097 kcal/mol (5483.0933 without restraints) Performing minimization step: 3976. Total energy = 5485.5388 kcal/mol (5482.4230 without restraints) Performing minimization step: 3977. Total energy = 5484.8684 kcal/mol (5481.7534 without restraints) Performing minimization step: 3978. Total energy = 5484.1983 kcal/mol (5481.0841 without restraints) Performing minimization step: 3979. Total energy = 5483.5285 kcal/mol (5480.4150 without restraints) Performing minimization step: 3980. Total energy = 5482.8591 kcal/mol (5479.7465 without restraints) Performing minimization step: 3981. Total energy = 5482.1904 kcal/mol (5479.0784 without restraints) Performing minimization step: 3982. Total energy = 5481.5218 kcal/mol (5478.4107 without restraints) Performing minimization step: 3983. Total energy = 5480.8539 kcal/mol (5477.7436 without restraints) Performing minimization step: 3984. Total energy = 5480.1862 kcal/mol (5477.0767 without restraints) Performing minimization step: 3985. Total energy = 5479.5194 kcal/mol (5476.4106 without restraints) Performing minimization step: 3986. Total energy = 5478.8531 kcal/mol (5475.7451 without restraints) Performing minimization step: 3987. Total energy = 5478.1872 kcal/mol (5475.0799 without restraints) Performing minimization step: 3988. Total energy = 5477.5217 kcal/mol (5474.4153 without restraints) Performing minimization step: 3989. Total energy = 5476.8567 kcal/mol (5473.7511 without restraints) Performing minimization step: 3990. Total energy = 5476.1926 kcal/mol (5473.0878 without restraints) Performing minimization step: 3991. Total energy = 5475.5286 kcal/mol (5472.4245 without restraints) Performing minimization step: 3992. Total energy = 5474.8647 kcal/mol (5471.7614 without restraints) Performing minimization step: 3993. Total energy = 5474.2018 kcal/mol (5471.0993 without restraints) Performing minimization step: 3994. Total energy = 5473.5399 kcal/mol (5470.4383 without restraints) Performing minimization step: 3995. Total energy = 5472.8778 kcal/mol (5469.7769 without restraints) Performing minimization step: 3996. Total energy = 5472.2163 kcal/mol (5469.1161 without restraints) Performing minimization step: 3997. Total energy = 5471.5553 kcal/mol (5468.4559 without restraints) Performing minimization step: 3998. Total energy = 5470.8946 kcal/mol (5467.7960 without restraints) Performing minimization step: 3999. Total energy = 5470.2346 kcal/mol (5467.1371 without restraints) Performing minimization step: 4000. Total energy = 5469.5763 kcal/mol (5466.4795 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 5468.9171 kcal/mol (5465.8209 without restraints) Performing minimization step: 4002. Total energy = 5468.2584 kcal/mol (5465.1630 without restraints) Performing minimization step: 4003. Total energy = 5467.6004 kcal/mol (5464.5057 without restraints) Performing minimization step: 4004. Total energy = 5466.9427 kcal/mol (5463.8487 without restraints) Performing minimization step: 4005. Total energy = 5466.2857 kcal/mol (5463.1925 without restraints) Performing minimization step: 4006. Total energy = 5465.6287 kcal/mol (5462.5363 without restraints) Performing minimization step: 4007. Total energy = 5464.9729 kcal/mol (5461.8813 without restraints) Performing minimization step: 4008. Total energy = 5464.3169 kcal/mol (5461.2261 without restraints) Performing minimization step: 4009. Total energy = 5463.6609 kcal/mol (5460.5708 without restraints) Performing minimization step: 4010. Total energy = 5463.0059 kcal/mol (5459.9166 without restraints) Performing minimization step: 4011. Total energy = 5462.3516 kcal/mol (5459.2630 without restraints) Performing minimization step: 4012. Total energy = 5461.6976 kcal/mol (5458.6099 without restraints) Performing minimization step: 4013. Total energy = 5461.0439 kcal/mol (5457.9571 without restraints) Performing minimization step: 4014. Total energy = 5460.3911 kcal/mol (5457.3051 without restraints) Performing minimization step: 4015. Total energy = 5459.7388 kcal/mol (5456.6534 without restraints) Performing minimization step: 4016. Total energy = 5459.0870 kcal/mol (5456.0024 without restraints) Performing minimization step: 4017. Total energy = 5458.4352 kcal/mol (5455.3514 without restraints) Performing minimization step: 4018. Total energy = 5457.7843 kcal/mol (5454.7012 without restraints) Performing minimization step: 4019. Total energy = 5457.1337 kcal/mol (5454.0514 without restraints) Performing minimization step: 4020. Total energy = 5456.4839 kcal/mol (5453.4023 without restraints) Performing minimization step: 4021. Total energy = 5455.8339 kcal/mol (5452.7532 without restraints) Performing minimization step: 4022. Total energy = 5455.1852 kcal/mol (5452.1052 without restraints) Performing minimization step: 4023. Total energy = 5454.5362 kcal/mol (5451.4569 without restraints) Performing minimization step: 4024. Total energy = 5453.8876 kcal/mol (5450.8092 without restraints) Performing minimization step: 4025. Total energy = 5453.2395 kcal/mol (5450.1619 without restraints) Performing minimization step: 4026. Total energy = 5452.5923 kcal/mol (5449.5154 without restraints) Performing minimization step: 4027. Total energy = 5451.9455 kcal/mol (5448.8695 without restraints) Performing minimization step: 4028. Total energy = 5451.2989 kcal/mol (5448.2235 without restraints) Performing minimization step: 4029. Total energy = 5450.6528 kcal/mol (5447.5783 without restraints) Performing minimization step: 4030. Total energy = 5450.0073 kcal/mol (5446.9335 without restraints) Performing minimization step: 4031. Total energy = 5449.3621 kcal/mol (5446.2892 without restraints) Performing minimization step: 4032. Total energy = 5448.7180 kcal/mol (5445.6458 without restraints) Performing minimization step: 4033. Total energy = 5448.0737 kcal/mol (5445.0022 without restraints) Performing minimization step: 4034. Total energy = 5447.4300 kcal/mol (5444.3593 without restraints) Performing minimization step: 4035. Total energy = 5446.7866 kcal/mol (5443.7167 without restraints) Performing minimization step: 4036. Total energy = 5446.1435 kcal/mol (5443.0741 without restraints) Performing minimization step: 4037. Total energy = 5445.5007 kcal/mol (5442.4323 without restraints) Performing minimization step: 4038. Total energy = 5444.8586 kcal/mol (5441.7911 without restraints) Performing minimization step: 4039. Total energy = 5444.2176 kcal/mol (5441.1506 without restraints) Performing minimization step: 4040. Total energy = 5443.5765 kcal/mol (5440.5104 without restraints) Performing minimization step: 4041. Total energy = 5442.9361 kcal/mol (5439.8708 without restraints) Performing minimization step: 4042. Total energy = 5442.2959 kcal/mol (5439.2313 without restraints) Performing minimization step: 4043. Total energy = 5441.6568 kcal/mol (5438.5931 without restraints) Performing minimization step: 4044. Total energy = 5441.0176 kcal/mol (5437.9545 without restraints) Performing minimization step: 4045. Total energy = 5440.3790 kcal/mol (5437.3167 without restraints) Performing minimization step: 4046. Total energy = 5439.7404 kcal/mol (5436.6789 without restraints) Performing minimization step: 4047. Total energy = 5439.1026 kcal/mol (5436.0418 without restraints) Performing minimization step: 4048. Total energy = 5438.4652 kcal/mol (5435.4052 without restraints) Performing minimization step: 4049. Total energy = 5437.8284 kcal/mol (5434.7691 without restraints) Performing minimization step: 4050. Total energy = 5437.1911 kcal/mol (5434.1326 without restraints) Performing minimization step: 4051. Total energy = 5436.5546 kcal/mol (5433.4968 without restraints) Performing minimization step: 4052. Total energy = 5435.9189 kcal/mol (5432.8620 without restraints) Performing minimization step: 4053. Total energy = 5435.2839 kcal/mol (5432.2278 without restraints) Performing minimization step: 4054. Total energy = 5434.6493 kcal/mol (5431.5940 without restraints) Performing minimization step: 4055. Total energy = 5434.0149 kcal/mol (5430.9603 without restraints) Performing minimization step: 4056. Total energy = 5433.3813 kcal/mol (5430.3275 without restraints) Performing minimization step: 4057. Total energy = 5432.7482 kcal/mol (5429.6951 without restraints) Performing minimization step: 4058. Total energy = 5432.1152 kcal/mol (5429.0629 without restraints) Performing minimization step: 4059. Total energy = 5431.4830 kcal/mol (5428.4314 without restraints) Performing minimization step: 4060. Total energy = 5430.8506 kcal/mol (5427.7998 without restraints) Performing minimization step: 4061. Total energy = 5430.2192 kcal/mol (5427.1692 without restraints) Performing minimization step: 4062. Total energy = 5429.5883 kcal/mol (5426.5390 without restraints) Performing minimization step: 4063. Total energy = 5428.9574 kcal/mol (5425.9089 without restraints) Performing minimization step: 4064. Total energy = 5428.3271 kcal/mol (5425.2794 without restraints) Performing minimization step: 4065. Total energy = 5427.6976 kcal/mol (5424.6507 without restraints) Performing minimization step: 4066. Total energy = 5427.0691 kcal/mol (5424.0229 without restraints) Performing minimization step: 4067. Total energy = 5426.4399 kcal/mol (5423.3946 without restraints) Performing minimization step: 4068. Total energy = 5425.8121 kcal/mol (5422.7675 without restraints) Performing minimization step: 4069. Total energy = 5425.1846 kcal/mol (5422.1407 without restraints) Performing minimization step: 4070. Total energy = 5424.5572 kcal/mol (5421.5141 without restraints) Performing minimization step: 4071. Total energy = 5423.9301 kcal/mol (5420.8877 without restraints) Performing minimization step: 4072. Total energy = 5423.3035 kcal/mol (5420.2619 without restraints) Performing minimization step: 4073. Total energy = 5422.6778 kcal/mol (5419.6369 without restraints) Performing minimization step: 4074. Total energy = 5422.0518 kcal/mol (5419.0117 without restraints) Performing minimization step: 4075. Total energy = 5421.4265 kcal/mol (5418.3872 without restraints) Performing minimization step: 4076. Total energy = 5420.8022 kcal/mol (5417.7636 without restraints) Performing minimization step: 4077. Total energy = 5420.1778 kcal/mol (5417.1398 without restraints) Performing minimization step: 4078. Total energy = 5419.5536 kcal/mol (5416.5166 without restraints) Performing minimization step: 4079. Total energy = 5418.9305 kcal/mol (5415.8942 without restraints) Performing minimization step: 4080. Total energy = 5418.3073 kcal/mol (5415.2717 without restraints) Performing minimization step: 4081. Total energy = 5417.6850 kcal/mol (5414.6504 without restraints) Performing minimization step: 4082. Total energy = 5417.0630 kcal/mol (5414.0290 without restraints) Performing minimization step: 4083. Total energy = 5416.4410 kcal/mol (5413.4078 without restraints) Performing minimization step: 4084. Total energy = 5415.8199 kcal/mol (5412.7874 without restraints) Performing minimization step: 4085. Total energy = 5415.1989 kcal/mol (5412.1671 without restraints) Performing minimization step: 4086. Total energy = 5414.5787 kcal/mol (5411.5477 without restraints) Performing minimization step: 4087. Total energy = 5413.9586 kcal/mol (5410.9284 without restraints) Performing minimization step: 4088. Total energy = 5413.3388 kcal/mol (5410.3093 without restraints) Performing minimization step: 4089. Total energy = 5412.7197 kcal/mol (5409.6910 without restraints) Performing minimization step: 4090. Total energy = 5412.1011 kcal/mol (5409.0732 without restraints) Performing minimization step: 4091. Total energy = 5411.4829 kcal/mol (5408.4557 without restraints) Performing minimization step: 4092. Total energy = 5410.8651 kcal/mol (5407.8387 without restraints) Performing minimization step: 4093. Total energy = 5410.2476 kcal/mol (5407.2220 without restraints) Performing minimization step: 4094. Total energy = 5409.6314 kcal/mol (5406.6065 without restraints) Performing minimization step: 4095. Total energy = 5409.0152 kcal/mol (5405.9910 without restraints) Performing minimization step: 4096. Total energy = 5408.3989 kcal/mol (5405.3755 without restraints) Performing minimization step: 4097. Total energy = 5407.7833 kcal/mol (5404.7608 without restraints) Performing minimization step: 4098. Total energy = 5407.1682 kcal/mol (5404.1464 without restraints) Performing minimization step: 4099. Total energy = 5406.5531 kcal/mol (5403.5319 without restraints) Performing minimization step: 4100. Total energy = 5405.9384 kcal/mol (5402.9180 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 5405.3247 kcal/mol (5402.3052 without restraints) Performing minimization step: 4102. Total energy = 5404.7113 kcal/mol (5401.6924 without restraints) Performing minimization step: 4103. Total energy = 5404.0987 kcal/mol (5401.0806 without restraints) Performing minimization step: 4104. Total energy = 5403.4862 kcal/mol (5400.4688 without restraints) Performing minimization step: 4105. Total energy = 5402.8738 kcal/mol (5399.8572 without restraints) Performing minimization step: 4106. Total energy = 5402.2617 kcal/mol (5399.2459 without restraints) Performing minimization step: 4107. Total energy = 5401.6502 kcal/mol (5398.6351 without restraints) Performing minimization step: 4108. Total energy = 5401.0392 kcal/mol (5398.0249 without restraints) Performing minimization step: 4109. Total energy = 5400.4288 kcal/mol (5397.4152 without restraints) Performing minimization step: 4110. Total energy = 5399.8190 kcal/mol (5396.8062 without restraints) Performing minimization step: 4111. Total energy = 5399.2091 kcal/mol (5396.1970 without restraints) Performing minimization step: 4112. Total energy = 5398.5995 kcal/mol (5395.5881 without restraints) Performing minimization step: 4113. Total energy = 5397.9907 kcal/mol (5394.9802 without restraints) Performing minimization step: 4114. Total energy = 5397.3824 kcal/mol (5394.3727 without restraints) Performing minimization step: 4115. Total energy = 5396.7746 kcal/mol (5393.7655 without restraints) Performing minimization step: 4116. Total energy = 5396.1669 kcal/mol (5393.1586 without restraints) Performing minimization step: 4117. Total energy = 5395.5598 kcal/mol (5392.5521 without restraints) Performing minimization step: 4118. Total energy = 5394.9536 kcal/mol (5391.9468 without restraints) Performing minimization step: 4119. Total energy = 5394.3474 kcal/mol (5391.3414 without restraints) Performing minimization step: 4120. Total energy = 5393.7423 kcal/mol (5390.7370 without restraints) Performing minimization step: 4121. Total energy = 5393.1366 kcal/mol (5390.1321 without restraints) Performing minimization step: 4122. Total energy = 5392.5317 kcal/mol (5389.5279 without restraints) Performing minimization step: 4123. Total energy = 5391.9271 kcal/mol (5388.9241 without restraints) Performing minimization step: 4124. Total energy = 5391.3230 kcal/mol (5388.3207 without restraints) Performing minimization step: 4125. Total energy = 5390.7194 kcal/mol (5387.7178 without restraints) Performing minimization step: 4126. Total energy = 5390.1158 kcal/mol (5387.1151 without restraints) Performing minimization step: 4127. Total energy = 5389.5130 kcal/mol (5386.5131 without restraints) Performing minimization step: 4128. Total energy = 5388.9111 kcal/mol (5385.9118 without restraints) Performing minimization step: 4129. Total energy = 5388.3092 kcal/mol (5385.3107 without restraints) Performing minimization step: 4130. Total energy = 5387.7073 kcal/mol (5384.7095 without restraints) Performing minimization step: 4131. Total energy = 5387.1061 kcal/mol (5384.1091 without restraints) Performing minimization step: 4132. Total energy = 5386.5054 kcal/mol (5383.5091 without restraints) Performing minimization step: 4133. Total energy = 5385.9050 kcal/mol (5382.9094 without restraints) Performing minimization step: 4134. Total energy = 5385.3052 kcal/mol (5382.3104 without restraints) Performing minimization step: 4135. Total energy = 5384.7058 kcal/mol (5381.7118 without restraints) Performing minimization step: 4136. Total energy = 5384.1070 kcal/mol (5381.1137 without restraints) Performing minimization step: 4137. Total energy = 5383.5083 kcal/mol (5380.5158 without restraints) Performing minimization step: 4138. Total energy = 5382.9104 kcal/mol (5379.9186 without restraints) Performing minimization step: 4139. Total energy = 5382.3129 kcal/mol (5379.3220 without restraints) Performing minimization step: 4140. Total energy = 5381.7157 kcal/mol (5378.7255 without restraints) Performing minimization step: 4141. Total energy = 5381.1187 kcal/mol (5378.1291 without restraints) Performing minimization step: 4142. Total energy = 5380.5223 kcal/mol (5377.5335 without restraints) Performing minimization step: 4143. Total energy = 5379.9261 kcal/mol (5376.9381 without restraints) Performing minimization step: 4144. Total energy = 5379.3299 kcal/mol (5376.3426 without restraints) Performing minimization step: 4145. Total energy = 5378.7345 kcal/mol (5375.7480 without restraints) Performing minimization step: 4146. Total energy = 5378.1394 kcal/mol (5375.1536 without restraints) Performing minimization step: 4147. Total energy = 5377.5450 kcal/mol (5374.5600 without restraints) Performing minimization step: 4148. Total energy = 5376.9508 kcal/mol (5373.9665 without restraints) Performing minimization step: 4149. Total energy = 5376.3571 kcal/mol (5373.3736 without restraints) Performing minimization step: 4150. Total energy = 5375.7638 kcal/mol (5372.7810 without restraints) Performing minimization step: 4151. Total energy = 5375.1710 kcal/mol (5372.1889 without restraints) Performing minimization step: 4152. Total energy = 5374.5785 kcal/mol (5371.5973 without restraints) Performing minimization step: 4153. Total energy = 5373.9870 kcal/mol (5371.0063 without restraints) Performing minimization step: 4154. Total energy = 5373.3956 kcal/mol (5370.4159 without restraints) Performing minimization step: 4155. Total energy = 5372.8046 kcal/mol (5369.8257 without restraints) Performing minimization step: 4156. Total energy = 5372.2139 kcal/mol (5369.2356 without restraints) Performing minimization step: 4157. Total energy = 5371.6238 kcal/mol (5368.6463 without restraints) Performing minimization step: 4158. Total energy = 5371.0344 kcal/mol (5368.0576 without restraints) Performing minimization step: 4159. Total energy = 5370.4451 kcal/mol (5367.4691 without restraints) Performing minimization step: 4160. Total energy = 5369.8562 kcal/mol (5366.8809 without restraints) Performing minimization step: 4161. Total energy = 5369.2674 kcal/mol (5366.2928 without restraints) Performing minimization step: 4162. Total energy = 5368.6793 kcal/mol (5365.7055 without restraints) Performing minimization step: 4163. Total energy = 5368.0915 kcal/mol (5365.1185 without restraints) Performing minimization step: 4164. Total energy = 5367.5044 kcal/mol (5364.5321 without restraints) Performing minimization step: 4165. Total energy = 5366.9176 kcal/mol (5363.9460 without restraints) Performing minimization step: 4166. Total energy = 5366.3307 kcal/mol (5363.3598 without restraints) Performing minimization step: 4167. Total energy = 5365.7443 kcal/mol (5362.7741 without restraints) Performing minimization step: 4168. Total energy = 5365.1586 kcal/mol (5362.1892 without restraints) Performing minimization step: 4169. Total energy = 5364.5733 kcal/mol (5361.6047 without restraints) Performing minimization step: 4170. Total energy = 5363.9882 kcal/mol (5361.0205 without restraints) Performing minimization step: 4171. Total energy = 5363.4039 kcal/mol (5360.4367 without restraints) Performing minimization step: 4172. Total energy = 5362.8195 kcal/mol (5359.8531 without restraints) Performing minimization step: 4173. Total energy = 5362.2361 kcal/mol (5359.2704 without restraints) Performing minimization step: 4174. Total energy = 5361.6526 kcal/mol (5358.6877 without restraints) Performing minimization step: 4175. Total energy = 5361.0693 kcal/mol (5358.1051 without restraints) Performing minimization step: 4176. Total energy = 5360.4866 kcal/mol (5357.5232 without restraints) Performing minimization step: 4177. Total energy = 5359.9045 kcal/mol (5356.9417 without restraints) Performing minimization step: 4178. Total energy = 5359.3225 kcal/mol (5356.3606 without restraints) Performing minimization step: 4179. Total energy = 5358.7410 kcal/mol (5355.7798 without restraints) Performing minimization step: 4180. Total energy = 5358.1598 kcal/mol (5355.1992 without restraints) Performing minimization step: 4181. Total energy = 5357.5792 kcal/mol (5354.6195 without restraints) Performing minimization step: 4182. Total energy = 5356.9990 kcal/mol (5354.0400 without restraints) Performing minimization step: 4183. Total energy = 5356.4193 kcal/mol (5353.4611 without restraints) Performing minimization step: 4184. Total energy = 5355.8401 kcal/mol (5352.8826 without restraints) Performing minimization step: 4185. Total energy = 5355.2608 kcal/mol (5352.3041 without restraints) Performing minimization step: 4186. Total energy = 5354.6819 kcal/mol (5351.7259 without restraints) Performing minimization step: 4187. Total energy = 5354.1040 kcal/mol (5351.1488 without restraints) Performing minimization step: 4188. Total energy = 5353.5261 kcal/mol (5350.5717 without restraints) Performing minimization step: 4189. Total energy = 5352.9491 kcal/mol (5349.9954 without restraints) Performing minimization step: 4190. Total energy = 5352.3727 kcal/mol (5349.4200 without restraints) Performing minimization step: 4191. Total energy = 5351.7964 kcal/mol (5348.8441 without restraints) Performing minimization step: 4192. Total energy = 5351.2202 kcal/mol (5348.2686 without restraints) Performing minimization step: 4193. Total energy = 5350.6443 kcal/mol (5347.6935 without restraints) Performing minimization step: 4194. Total energy = 5350.0694 kcal/mol (5347.1194 without restraints) Performing minimization step: 4195. Total energy = 5349.4940 kcal/mol (5346.5447 without restraints) Performing minimization step: 4196. Total energy = 5348.9192 kcal/mol (5345.9706 without restraints) Performing minimization step: 4197. Total energy = 5348.3450 kcal/mol (5345.3971 without restraints) Performing minimization step: 4198. Total energy = 5347.7712 kcal/mol (5344.8241 without restraints) Performing minimization step: 4199. Total energy = 5347.1977 kcal/mol (5344.2514 without restraints) Performing minimization step: 4200. Total energy = 5346.6252 kcal/mol (5343.6795 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 5346.0523 kcal/mol (5343.1074 without restraints) Performing minimization step: 4202. Total energy = 5345.4802 kcal/mol (5342.5360 without restraints) Performing minimization step: 4203. Total energy = 5344.9088 kcal/mol (5341.9654 without restraints) Performing minimization step: 4204. Total energy = 5344.3372 kcal/mol (5341.3945 without restraints) Performing minimization step: 4205. Total energy = 5343.7662 kcal/mol (5340.8243 without restraints) Performing minimization step: 4206. Total energy = 5343.1955 kcal/mol (5340.2543 without restraints) Performing minimization step: 4207. Total energy = 5342.6253 kcal/mol (5339.6848 without restraints) Performing minimization step: 4208. Total energy = 5342.0551 kcal/mol (5339.1154 without restraints) Performing minimization step: 4209. Total energy = 5341.4861 kcal/mol (5338.5473 without restraints) Performing minimization step: 4210. Total energy = 5340.9177 kcal/mol (5337.9797 without restraints) Performing minimization step: 4211. Total energy = 5340.3491 kcal/mol (5337.4116 without restraints) Performing minimization step: 4212. Total energy = 5339.7809 kcal/mol (5336.8443 without restraints) Performing minimization step: 4213. Total energy = 5339.2131 kcal/mol (5336.2770 without restraints) Performing minimization step: 4214. Total energy = 5338.6457 kcal/mol (5335.7104 without restraints) Performing minimization step: 4215. Total energy = 5338.0787 kcal/mol (5335.1441 without restraints) Performing minimization step: 4216. Total energy = 5337.5121 kcal/mol (5334.5782 without restraints) Performing minimization step: 4217. Total energy = 5336.9465 kcal/mol (5334.0135 without restraints) Performing minimization step: 4218. Total energy = 5336.3808 kcal/mol (5333.4484 without restraints) Performing minimization step: 4219. Total energy = 5335.8156 kcal/mol (5332.8840 without restraints) Performing minimization step: 4220. Total energy = 5335.2502 kcal/mol (5332.3193 without restraints) Performing minimization step: 4221. Total energy = 5334.6857 kcal/mol (5331.7555 without restraints) Performing minimization step: 4222. Total energy = 5334.1214 kcal/mol (5331.1920 without restraints) Performing minimization step: 4223. Total energy = 5333.5574 kcal/mol (5330.6287 without restraints) Performing minimization step: 4224. Total energy = 5332.9938 kcal/mol (5330.0659 without restraints) Performing minimization step: 4225. Total energy = 5332.4306 kcal/mol (5329.5034 without restraints) Performing minimization step: 4226. Total energy = 5331.8678 kcal/mol (5328.9414 without restraints) Performing minimization step: 4227. Total energy = 5331.3056 kcal/mol (5328.3798 without restraints) Performing minimization step: 4228. Total energy = 5330.7436 kcal/mol (5327.8187 without restraints) Performing minimization step: 4229. Total energy = 5330.1820 kcal/mol (5327.2577 without restraints) Performing minimization step: 4230. Total energy = 5329.6209 kcal/mol (5326.6974 without restraints) Performing minimization step: 4231. Total energy = 5329.0600 kcal/mol (5326.1373 without restraints) Performing minimization step: 4232. Total energy = 5328.4997 kcal/mol (5325.5777 without restraints) Performing minimization step: 4233. Total energy = 5327.9396 kcal/mol (5325.0182 without restraints) Performing minimization step: 4234. Total energy = 5327.3798 kcal/mol (5324.4592 without restraints) Performing minimization step: 4235. Total energy = 5326.8206 kcal/mol (5323.9008 without restraints) Performing minimization step: 4236. Total energy = 5326.2620 kcal/mol (5323.3429 without restraints) Performing minimization step: 4237. Total energy = 5325.7034 kcal/mol (5322.7850 without restraints) Performing minimization step: 4238. Total energy = 5325.1453 kcal/mol (5322.2277 without restraints) Performing minimization step: 4239. Total energy = 5324.5877 kcal/mol (5321.6708 without restraints) Performing minimization step: 4240. Total energy = 5324.0304 kcal/mol (5321.1142 without restraints) Performing minimization step: 4241. Total energy = 5323.4733 kcal/mol (5320.5578 without restraints) Performing minimization step: 4242. Total energy = 5322.9167 kcal/mol (5320.0021 without restraints) Performing minimization step: 4243. Total energy = 5322.3605 kcal/mol (5319.4465 without restraints) Performing minimization step: 4244. Total energy = 5321.8046 kcal/mol (5318.8913 without restraints) Performing minimization step: 4245. Total energy = 5321.2492 kcal/mol (5318.3369 without restraints) Performing minimization step: 4246. Total energy = 5320.6947 kcal/mol (5317.7830 without restraints) Performing minimization step: 4247. Total energy = 5320.1398 kcal/mol (5317.2287 without restraints) Performing minimization step: 4248. Total energy = 5319.5855 kcal/mol (5316.6752 without restraints) Performing minimization step: 4249. Total energy = 5319.0320 kcal/mol (5316.1225 without restraints) Performing minimization step: 4250. Total energy = 5318.4784 kcal/mol (5315.5694 without restraints) Performing minimization step: 4251. Total energy = 5317.9252 kcal/mol (5315.0171 without restraints) Performing minimization step: 4252. Total energy = 5317.3724 kcal/mol (5314.4652 without restraints) Performing minimization step: 4253. Total energy = 5316.8201 kcal/mol (5313.9134 without restraints) Performing minimization step: 4254. Total energy = 5316.2682 kcal/mol (5313.3623 without restraints) Performing minimization step: 4255. Total energy = 5315.7164 kcal/mol (5312.8112 without restraints) Performing minimization step: 4256. Total energy = 5315.1655 kcal/mol (5312.2610 without restraints) Performing minimization step: 4257. Total energy = 5314.6147 kcal/mol (5311.7111 without restraints) Performing minimization step: 4258. Total energy = 5314.0644 kcal/mol (5311.1614 without restraints) Performing minimization step: 4259. Total energy = 5313.5143 kcal/mol (5310.6120 without restraints) Performing minimization step: 4260. Total energy = 5312.9646 kcal/mol (5310.0631 without restraints) Performing minimization step: 4261. Total energy = 5312.4153 kcal/mol (5309.5146 without restraints) Performing minimization step: 4262. Total energy = 5311.8665 kcal/mol (5308.9666 without restraints) Performing minimization step: 4263. Total energy = 5311.3182 kcal/mol (5308.4189 without restraints) Performing minimization step: 4264. Total energy = 5310.7696 kcal/mol (5307.8709 without restraints) Performing minimization step: 4265. Total energy = 5310.2214 kcal/mol (5307.3233 without restraints) Performing minimization step: 4266. Total energy = 5309.6736 kcal/mol (5306.7765 without restraints) Performing minimization step: 4267. Total energy = 5309.1266 kcal/mol (5306.2302 without restraints) Performing minimization step: 4268. Total energy = 5308.5800 kcal/mol (5305.6843 without restraints) Performing minimization step: 4269. Total energy = 5308.0339 kcal/mol (5305.1389 without restraints) Performing minimization step: 4270. Total energy = 5307.4878 kcal/mol (5304.5936 without restraints) Performing minimization step: 4271. Total energy = 5306.9424 kcal/mol (5304.0490 without restraints) Performing minimization step: 4272. Total energy = 5306.3972 kcal/mol (5303.5044 without restraints) Performing minimization step: 4273. Total energy = 5305.8524 kcal/mol (5302.9604 without restraints) Performing minimization step: 4274. Total energy = 5305.3083 kcal/mol (5302.4170 without restraints) Performing minimization step: 4275. Total energy = 5304.7643 kcal/mol (5301.8737 without restraints) Performing minimization step: 4276. Total energy = 5304.2208 kcal/mol (5301.3311 without restraints) Performing minimization step: 4277. Total energy = 5303.6777 kcal/mol (5300.7887 without restraints) Performing minimization step: 4278. Total energy = 5303.1352 kcal/mol (5300.2469 without restraints) Performing minimization step: 4279. Total energy = 5302.5930 kcal/mol (5299.7054 without restraints) Performing minimization step: 4280. Total energy = 5302.0508 kcal/mol (5299.1638 without restraints) Performing minimization step: 4281. Total energy = 5301.5089 kcal/mol (5298.6228 without restraints) Performing minimization step: 4282. Total energy = 5300.9675 kcal/mol (5298.0821 without restraints) Performing minimization step: 4283. Total energy = 5300.4266 kcal/mol (5297.5418 without restraints) Performing minimization step: 4284. Total energy = 5299.8857 kcal/mol (5297.0016 without restraints) Performing minimization step: 4285. Total energy = 5299.3451 kcal/mol (5296.4618 without restraints) Performing minimization step: 4286. Total energy = 5298.8055 kcal/mol (5295.9230 without restraints) Performing minimization step: 4287. Total energy = 5298.2664 kcal/mol (5295.3846 without restraints) Performing minimization step: 4288. Total energy = 5297.7269 kcal/mol (5294.8458 without restraints) Performing minimization step: 4289. Total energy = 5297.1879 kcal/mol (5294.3075 without restraints) Performing minimization step: 4290. Total energy = 5296.6493 kcal/mol (5293.7697 without restraints) Performing minimization step: 4291. Total energy = 5296.1111 kcal/mol (5293.2324 without restraints) Performing minimization step: 4292. Total energy = 5295.5735 kcal/mol (5292.6954 without restraints) Performing minimization step: 4293. Total energy = 5295.0360 kcal/mol (5292.1585 without restraints) Performing minimization step: 4294. Total energy = 5294.4990 kcal/mol (5291.6223 without restraints) Performing minimization step: 4295. Total energy = 5293.9629 kcal/mol (5291.0869 without restraints) Performing minimization step: 4296. Total energy = 5293.4266 kcal/mol (5290.5513 without restraints) Performing minimization step: 4297. Total energy = 5292.8905 kcal/mol (5290.0160 without restraints) Performing minimization step: 4298. Total energy = 5292.3548 kcal/mol (5289.4810 without restraints) Performing minimization step: 4299. Total energy = 5291.8193 kcal/mol (5288.9463 without restraints) Performing minimization step: 4300. Total energy = 5291.2844 kcal/mol (5288.4120 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 5290.7501 kcal/mol (5287.8785 without restraints) Performing minimization step: 4302. Total energy = 5290.2161 kcal/mol (5287.3452 without restraints) Performing minimization step: 4303. Total energy = 5289.6822 kcal/mol (5286.8120 without restraints) Performing minimization step: 4304. Total energy = 5289.1491 kcal/mol (5286.2799 without restraints) Performing minimization step: 4305. Total energy = 5288.6166 kcal/mol (5285.7478 without restraints) Performing minimization step: 4306. Total energy = 5288.0836 kcal/mol (5285.2156 without restraints) Performing minimization step: 4307. Total energy = 5287.5514 kcal/mol (5284.6841 without restraints) Performing minimization step: 4308. Total energy = 5287.0196 kcal/mol (5284.1530 without restraints) Performing minimization step: 4309. Total energy = 5286.4879 kcal/mol (5283.6220 without restraints) Performing minimization step: 4310. Total energy = 5285.9571 kcal/mol (5283.0920 without restraints) Performing minimization step: 4311. Total energy = 5285.4261 kcal/mol (5282.5617 without restraints) Performing minimization step: 4312. Total energy = 5284.8953 kcal/mol (5282.0317 without restraints) Performing minimization step: 4313. Total energy = 5284.3652 kcal/mol (5281.5023 without restraints) Performing minimization step: 4314. Total energy = 5283.8355 kcal/mol (5280.9733 without restraints) Performing minimization step: 4315. Total energy = 5283.3064 kcal/mol (5280.4449 without restraints) Performing minimization step: 4316. Total energy = 5282.7776 kcal/mol (5279.9168 without restraints) Performing minimization step: 4317. Total energy = 5282.2488 kcal/mol (5279.3887 without restraints) Performing minimization step: 4318. Total energy = 5281.7201 kcal/mol (5278.8607 without restraints) Performing minimization step: 4319. Total energy = 5281.1919 kcal/mol (5278.3333 without restraints) Performing minimization step: 4320. Total energy = 5280.6641 kcal/mol (5277.8061 without restraints) Performing minimization step: 4321. Total energy = 5280.1366 kcal/mol (5277.2796 without restraints) Performing minimization step: 4322. Total energy = 5279.6097 kcal/mol (5276.7533 without restraints) Performing minimization step: 4323. Total energy = 5279.0828 kcal/mol (5276.2271 without restraints) Performing minimization step: 4324. Total energy = 5278.5566 kcal/mol (5275.7017 without restraints) Performing minimization step: 4325. Total energy = 5278.0309 kcal/mol (5275.1769 without restraints) Performing minimization step: 4326. Total energy = 5277.5059 kcal/mol (5274.6527 without restraints) Performing minimization step: 4327. Total energy = 5276.9812 kcal/mol (5274.1284 without restraints) Performing minimization step: 4328. Total energy = 5276.4567 kcal/mol (5273.6046 without restraints) Performing minimization step: 4329. Total energy = 5275.9326 kcal/mol (5273.0814 without restraints) Performing minimization step: 4330. Total energy = 5275.4086 kcal/mol (5272.5581 without restraints) Performing minimization step: 4331. Total energy = 5274.8851 kcal/mol (5272.0354 without restraints) Performing minimization step: 4332. Total energy = 5274.3620 kcal/mol (5271.5128 without restraints) Performing minimization step: 4333. Total energy = 5273.8392 kcal/mol (5270.9907 without restraints) Performing minimization step: 4334. Total energy = 5273.3166 kcal/mol (5270.4691 without restraints) Performing minimization step: 4335. Total energy = 5272.7947 kcal/mol (5269.9476 without restraints) Performing minimization step: 4336. Total energy = 5272.2726 kcal/mol (5269.4263 without restraints) Performing minimization step: 4337. Total energy = 5271.7509 kcal/mol (5268.9052 without restraints) Performing minimization step: 4338. Total energy = 5271.2294 kcal/mol (5268.3845 without restraints) Performing minimization step: 4339. Total energy = 5270.7086 kcal/mol (5267.8645 without restraints) Performing minimization step: 4340. Total energy = 5270.1882 kcal/mol (5267.3449 without restraints) Performing minimization step: 4341. Total energy = 5269.6678 kcal/mol (5266.8251 without restraints) Performing minimization step: 4342. Total energy = 5269.1479 kcal/mol (5266.3059 without restraints) Performing minimization step: 4343. Total energy = 5268.6284 kcal/mol (5265.7870 without restraints) Performing minimization step: 4344. Total energy = 5268.1091 kcal/mol (5265.2686 without restraints) Performing minimization step: 4345. Total energy = 5267.5903 kcal/mol (5264.7505 without restraints) Performing minimization step: 4346. Total energy = 5267.0717 kcal/mol (5264.2327 without restraints) Performing minimization step: 4347. Total energy = 5266.5537 kcal/mol (5263.7154 without restraints) Performing minimization step: 4348. Total energy = 5266.0362 kcal/mol (5263.1986 without restraints) Performing minimization step: 4349. Total energy = 5265.5189 kcal/mol (5262.6820 without restraints) Performing minimization step: 4350. Total energy = 5265.0021 kcal/mol (5262.1659 without restraints) Performing minimization step: 4351. Total energy = 5264.4858 kcal/mol (5261.6503 without restraints) Performing minimization step: 4352. Total energy = 5263.9702 kcal/mol (5261.1355 without restraints) Performing minimization step: 4353. Total energy = 5263.4541 kcal/mol (5260.6200 without restraints) Performing minimization step: 4354. Total energy = 5262.9381 kcal/mol (5260.1048 without restraints) Performing minimization step: 4355. Total energy = 5262.4233 kcal/mol (5259.5907 without restraints) Performing minimization step: 4356. Total energy = 5261.9083 kcal/mol (5259.0764 without restraints) Performing minimization step: 4357. Total energy = 5261.3939 kcal/mol (5258.5627 without restraints) Performing minimization step: 4358. Total energy = 5260.8802 kcal/mol (5258.0498 without restraints) Performing minimization step: 4359. Total energy = 5260.3663 kcal/mol (5257.5366 without restraints) Performing minimization step: 4360. Total energy = 5259.8527 kcal/mol (5257.0237 without restraints) Performing minimization step: 4361. Total energy = 5259.3401 kcal/mol (5256.5119 without restraints) Performing minimization step: 4362. Total energy = 5258.8274 kcal/mol (5255.9998 without restraints) Performing minimization step: 4363. Total energy = 5258.3149 kcal/mol (5255.4880 without restraints) Performing minimization step: 4364. Total energy = 5257.8031 kcal/mol (5254.9770 without restraints) Performing minimization step: 4365. Total energy = 5257.2912 kcal/mol (5254.4658 without restraints) Performing minimization step: 4366. Total energy = 5256.7797 kcal/mol (5253.9550 without restraints) Performing minimization step: 4367. Total energy = 5256.2688 kcal/mol (5253.4448 without restraints) Performing minimization step: 4368. Total energy = 5255.7582 kcal/mol (5252.9349 without restraints) Performing minimization step: 4369. Total energy = 5255.2477 kcal/mol (5252.4252 without restraints) Performing minimization step: 4370. Total energy = 5254.7376 kcal/mol (5251.9158 without restraints) Performing minimization step: 4371. Total energy = 5254.2280 kcal/mol (5251.4069 without restraints) Performing minimization step: 4372. Total energy = 5253.7186 kcal/mol (5250.8982 without restraints) Performing minimization step: 4373. Total energy = 5253.2099 kcal/mol (5250.3903 without restraints) Performing minimization step: 4374. Total energy = 5252.7016 kcal/mol (5249.8827 without restraints) Performing minimization step: 4375. Total energy = 5252.1932 kcal/mol (5249.3750 without restraints) Performing minimization step: 4376. Total energy = 5251.6851 kcal/mol (5248.8677 without restraints) Performing minimization step: 4377. Total energy = 5251.1775 kcal/mol (5248.3609 without restraints) Performing minimization step: 4378. Total energy = 5250.6707 kcal/mol (5247.8548 without restraints) Performing minimization step: 4379. Total energy = 5250.1636 kcal/mol (5247.3483 without restraints) Performing minimization step: 4380. Total energy = 5249.6572 kcal/mol (5246.8426 without restraints) Performing minimization step: 4381. Total energy = 5249.1508 kcal/mol (5246.3369 without restraints) Performing minimization step: 4382. Total energy = 5248.6449 kcal/mol (5245.8319 without restraints) Performing minimization step: 4383. Total energy = 5248.1394 kcal/mol (5245.3269 without restraints) Performing minimization step: 4384. Total energy = 5247.6338 kcal/mol (5244.8221 without restraints) Performing minimization step: 4385. Total energy = 5247.1290 kcal/mol (5244.3180 without restraints) Performing minimization step: 4386. Total energy = 5246.6242 kcal/mol (5243.8139 without restraints) Performing minimization step: 4387. Total energy = 5246.1199 kcal/mol (5243.3103 without restraints) Performing minimization step: 4388. Total energy = 5245.6157 kcal/mol (5242.8068 without restraints) Performing minimization step: 4389. Total energy = 5245.1120 kcal/mol (5242.3039 without restraints) Performing minimization step: 4390. Total energy = 5244.6091 kcal/mol (5241.8017 without restraints) Performing minimization step: 4391. Total energy = 5244.1062 kcal/mol (5241.2995 without restraints) Performing minimization step: 4392. Total energy = 5243.6039 kcal/mol (5240.7980 without restraints) Performing minimization step: 4393. Total energy = 5243.1023 kcal/mol (5240.2971 without restraints) Performing minimization step: 4394. Total energy = 5242.6007 kcal/mol (5239.7962 without restraints) Performing minimization step: 4395. Total energy = 5242.0992 kcal/mol (5239.2954 without restraints) Performing minimization step: 4396. Total energy = 5241.5981 kcal/mol (5238.7949 without restraints) Performing minimization step: 4397. Total energy = 5241.0971 kcal/mol (5238.2949 without restraints) Performing minimization step: 4398. Total energy = 5240.5971 kcal/mol (5237.7958 without restraints) Performing minimization step: 4399. Total energy = 5240.0975 kcal/mol (5237.2965 without restraints) Performing minimization step: 4400. Total energy = 5239.5982 kcal/mol (5236.7980 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 5239.0985 kcal/mol (5236.2991 without restraints) Performing minimization step: 4402. Total energy = 5238.5998 kcal/mol (5235.8009 without restraints) Performing minimization step: 4403. Total energy = 5238.1009 kcal/mol (5235.3028 without restraints) Performing minimization step: 4404. Total energy = 5237.6024 kcal/mol (5234.8050 without restraints) Performing minimization step: 4405. Total energy = 5237.1043 kcal/mol (5234.3078 without restraints) Performing minimization step: 4406. Total energy = 5236.6069 kcal/mol (5233.8109 without restraints) Performing minimization step: 4407. Total energy = 5236.1098 kcal/mol (5233.3145 without restraints) Performing minimization step: 4408. Total energy = 5235.6127 kcal/mol (5232.8182 without restraints) Performing minimization step: 4409. Total energy = 5235.1159 kcal/mol (5232.3221 without restraints) Performing minimization step: 4410. Total energy = 5234.6193 kcal/mol (5231.8262 without restraints) Performing minimization step: 4411. Total energy = 5234.1231 kcal/mol (5231.3307 without restraints) Performing minimization step: 4412. Total energy = 5233.6275 kcal/mol (5230.8358 without restraints) Performing minimization step: 4413. Total energy = 5233.1321 kcal/mol (5230.3412 without restraints) Performing minimization step: 4414. Total energy = 5232.6370 kcal/mol (5229.8468 without restraints) Performing minimization step: 4415. Total energy = 5232.1421 kcal/mol (5229.3526 without restraints) Performing minimization step: 4416. Total energy = 5231.6481 kcal/mol (5228.8594 without restraints) Performing minimization step: 4417. Total energy = 5231.1543 kcal/mol (5228.3662 without restraints) Performing minimization step: 4418. Total energy = 5230.6604 kcal/mol (5227.8731 without restraints) Performing minimization step: 4419. Total energy = 5230.1669 kcal/mol (5227.3801 without restraints) Performing minimization step: 4420. Total energy = 5229.6735 kcal/mol (5226.8876 without restraints) Performing minimization step: 4421. Total energy = 5229.1812 kcal/mol (5226.3961 without restraints) Performing minimization step: 4422. Total energy = 5228.6892 kcal/mol (5225.9047 without restraints) Performing minimization step: 4423. Total energy = 5228.1972 kcal/mol (5225.4134 without restraints) Performing minimization step: 4424. Total energy = 5227.7054 kcal/mol (5224.9223 without restraints) Performing minimization step: 4425. Total energy = 5227.2138 kcal/mol (5224.4315 without restraints) Performing minimization step: 4426. Total energy = 5226.7227 kcal/mol (5223.9410 without restraints) Performing minimization step: 4427. Total energy = 5226.2322 kcal/mol (5223.4512 without restraints) Performing minimization step: 4428. Total energy = 5225.7417 kcal/mol (5222.9615 without restraints) Performing minimization step: 4429. Total energy = 5225.2517 kcal/mol (5222.4723 without restraints) Performing minimization step: 4430. Total energy = 5224.7620 kcal/mol (5221.9831 without restraints) Performing minimization step: 4431. Total energy = 5224.2723 kcal/mol (5221.4942 without restraints) Performing minimization step: 4432. Total energy = 5223.7833 kcal/mol (5221.0059 without restraints) Performing minimization step: 4433. Total energy = 5223.2947 kcal/mol (5220.5182 without restraints) Performing minimization step: 4434. Total energy = 5222.8063 kcal/mol (5220.0303 without restraints) Performing minimization step: 4435. Total energy = 5222.3183 kcal/mol (5219.5432 without restraints) Performing minimization step: 4436. Total energy = 5221.8307 kcal/mol (5219.0562 without restraints) Performing minimization step: 4437. Total energy = 5221.3432 kcal/mol (5218.5694 without restraints) Performing minimization step: 4438. Total energy = 5220.8564 kcal/mol (5218.0835 without restraints) Performing minimization step: 4439. Total energy = 5220.3697 kcal/mol (5217.5973 without restraints) Performing minimization step: 4440. Total energy = 5219.8835 kcal/mol (5217.1119 without restraints) Performing minimization step: 4441. Total energy = 5219.3971 kcal/mol (5216.6262 without restraints) Performing minimization step: 4442. Total energy = 5218.9116 kcal/mol (5216.1414 without restraints) Performing minimization step: 4443. Total energy = 5218.4261 kcal/mol (5215.6566 without restraints) Performing minimization step: 4444. Total energy = 5217.9408 kcal/mol (5215.1720 without restraints) Performing minimization step: 4445. Total energy = 5217.4558 kcal/mol (5214.6877 without restraints) Performing minimization step: 4446. Total energy = 5216.9711 kcal/mol (5214.2038 without restraints) Performing minimization step: 4447. Total energy = 5216.4871 kcal/mol (5213.7204 without restraints) Performing minimization step: 4448. Total energy = 5216.0031 kcal/mol (5213.2371 without restraints) Performing minimization step: 4449. Total energy = 5215.5205 kcal/mol (5212.7552 without restraints) Performing minimization step: 4450. Total energy = 5215.0373 kcal/mol (5212.2730 without restraints) Performing minimization step: 4451. Total energy = 5214.5547 kcal/mol (5211.7908 without restraints) Performing minimization step: 4452. Total energy = 5214.0722 kcal/mol (5211.3092 without restraints) Performing minimization step: 4453. Total energy = 5213.5903 kcal/mol (5210.8279 without restraints) Performing minimization step: 4454. Total energy = 5213.1085 kcal/mol (5210.3469 without restraints) Performing minimization step: 4455. Total energy = 5212.6268 kcal/mol (5209.8658 without restraints) Performing minimization step: 4456. Total energy = 5212.1460 kcal/mol (5209.3857 without restraints) Performing minimization step: 4457. Total energy = 5211.6652 kcal/mol (5208.9057 without restraints) Performing minimization step: 4458. Total energy = 5211.1848 kcal/mol (5208.4259 without restraints) Performing minimization step: 4459. Total energy = 5210.7045 kcal/mol (5207.9463 without restraints) Performing minimization step: 4460. Total energy = 5210.2250 kcal/mol (5207.4676 without restraints) Performing minimization step: 4461. Total energy = 5209.7455 kcal/mol (5206.9888 without restraints) Performing minimization step: 4462. Total energy = 5209.2660 kcal/mol (5206.5100 without restraints) Performing minimization step: 4463. Total energy = 5208.7875 kcal/mol (5206.0322 without restraints) Performing minimization step: 4464. Total energy = 5208.3084 kcal/mol (5205.5538 without restraints) Performing minimization step: 4465. Total energy = 5207.8299 kcal/mol (5205.0760 without restraints) Performing minimization step: 4466. Total energy = 5207.3517 kcal/mol (5204.5985 without restraints) Performing minimization step: 4467. Total energy = 5206.8738 kcal/mol (5204.1213 without restraints) Performing minimization step: 4468. Total energy = 5206.3969 kcal/mol (5203.6450 without restraints) Performing minimization step: 4469. Total energy = 5205.9195 kcal/mol (5203.1685 without restraints) Performing minimization step: 4470. Total energy = 5205.4430 kcal/mol (5202.6927 without restraints) Performing minimization step: 4471. Total energy = 5204.9664 kcal/mol (5202.2168 without restraints) Performing minimization step: 4472. Total energy = 5204.4906 kcal/mol (5201.7418 without restraints) Performing minimization step: 4473. Total energy = 5204.0147 kcal/mol (5201.2666 without restraints) Performing minimization step: 4474. Total energy = 5203.5396 kcal/mol (5200.7922 without restraints) Performing minimization step: 4475. Total energy = 5203.0646 kcal/mol (5200.3178 without restraints) Performing minimization step: 4476. Total energy = 5202.5899 kcal/mol (5199.8439 without restraints) Performing minimization step: 4477. Total energy = 5202.1153 kcal/mol (5199.3700 without restraints) Performing minimization step: 4478. Total energy = 5201.6410 kcal/mol (5198.8964 without restraints) Performing minimization step: 4479. Total energy = 5201.1670 kcal/mol (5198.4231 without restraints) Performing minimization step: 4480. Total energy = 5200.6936 kcal/mol (5197.9504 without restraints) Performing minimization step: 4481. Total energy = 5200.2208 kcal/mol (5197.4783 without restraints) Performing minimization step: 4482. Total energy = 5199.7478 kcal/mol (5197.0060 without restraints) Performing minimization step: 4483. Total energy = 5199.2751 kcal/mol (5196.5340 without restraints) Performing minimization step: 4484. Total energy = 5198.8026 kcal/mol (5196.0623 without restraints) Performing minimization step: 4485. Total energy = 5198.3305 kcal/mol (5195.5908 without restraints) Performing minimization step: 4486. Total energy = 5197.8589 kcal/mol (5195.1200 without restraints) Performing minimization step: 4487. Total energy = 5197.3881 kcal/mol (5194.6500 without restraints) Performing minimization step: 4488. Total energy = 5196.9169 kcal/mol (5194.1794 without restraints) Performing minimization step: 4489. Total energy = 5196.4459 kcal/mol (5193.7091 without restraints) Performing minimization step: 4490. Total energy = 5195.9761 kcal/mol (5193.2401 without restraints) Performing minimization step: 4491. Total energy = 5195.5063 kcal/mol (5192.7711 without restraints) Performing minimization step: 4492. Total energy = 5195.0366 kcal/mol (5192.3019 without restraints) Performing minimization step: 4493. Total energy = 5194.5672 kcal/mol (5191.8332 without restraints) Performing minimization step: 4494. Total energy = 5194.0979 kcal/mol (5191.3646 without restraints) Performing minimization step: 4495. Total energy = 5193.6291 kcal/mol (5190.8965 without restraints) Performing minimization step: 4496. Total energy = 5193.1606 kcal/mol (5190.4287 without restraints) Performing minimization step: 4497. Total energy = 5192.6922 kcal/mol (5189.9611 without restraints) Performing minimization step: 4498. Total energy = 5192.2246 kcal/mol (5189.4941 without restraints) Performing minimization step: 4499. Total energy = 5191.7573 kcal/mol (5189.0274 without restraints) Performing minimization step: 4500. Total energy = 5191.2898 kcal/mol (5188.5608 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 5190.8227 kcal/mol (5188.0944 without restraints) Performing minimization step: 4502. Total energy = 5190.3563 kcal/mol (5187.6287 without restraints) Performing minimization step: 4503. Total energy = 5189.8903 kcal/mol (5187.1635 without restraints) Performing minimization step: 4504. Total energy = 5189.4243 kcal/mol (5186.6982 without restraints) Performing minimization step: 4505. Total energy = 5188.9587 kcal/mol (5186.2333 without restraints) Performing minimization step: 4506. Total energy = 5188.4929 kcal/mol (5185.7682 without restraints) Performing minimization step: 4507. Total energy = 5188.0279 kcal/mol (5185.3038 without restraints) Performing minimization step: 4508. Total energy = 5187.5632 kcal/mol (5184.8398 without restraints) Performing minimization step: 4509. Total energy = 5187.0987 kcal/mol (5184.3760 without restraints) Performing minimization step: 4510. Total energy = 5186.6343 kcal/mol (5183.9124 without restraints) Performing minimization step: 4511. Total energy = 5186.1709 kcal/mol (5183.4497 without restraints) Performing minimization step: 4512. Total energy = 5185.7077 kcal/mol (5182.9871 without restraints) Performing minimization step: 4513. Total energy = 5185.2448 kcal/mol (5182.5249 without restraints) Performing minimization step: 4514. Total energy = 5184.7821 kcal/mol (5182.0630 without restraints) Performing minimization step: 4515. Total energy = 5184.3195 kcal/mol (5181.6011 without restraints) Performing minimization step: 4516. Total energy = 5183.8573 kcal/mol (5181.1396 without restraints) Performing minimization step: 4517. Total energy = 5183.3955 kcal/mol (5180.6785 without restraints) Performing minimization step: 4518. Total energy = 5182.9335 kcal/mol (5180.2172 without restraints) Performing minimization step: 4519. Total energy = 5182.4721 kcal/mol (5179.7566 without restraints) Performing minimization step: 4520. Total energy = 5182.0108 kcal/mol (5179.2959 without restraints) Performing minimization step: 4521. Total energy = 5181.5506 kcal/mol (5178.8365 without restraints) Performing minimization step: 4522. Total energy = 5181.0904 kcal/mol (5178.3770 without restraints) Performing minimization step: 4523. Total energy = 5180.6304 kcal/mol (5177.9177 without restraints) Performing minimization step: 4524. Total energy = 5180.1707 kcal/mol (5177.4586 without restraints) Performing minimization step: 4525. Total energy = 5179.7109 kcal/mol (5176.9995 without restraints) Performing minimization step: 4526. Total energy = 5179.2518 kcal/mol (5176.5412 without restraints) Performing minimization step: 4527. Total energy = 5178.7930 kcal/mol (5176.0831 without restraints) Performing minimization step: 4528. Total energy = 5178.3343 kcal/mol (5175.6250 without restraints) Performing minimization step: 4529. Total energy = 5177.8756 kcal/mol (5175.1671 without restraints) Performing minimization step: 4530. Total energy = 5177.4177 kcal/mol (5174.7099 without restraints) Performing minimization step: 4531. Total energy = 5176.9599 kcal/mol (5174.2528 without restraints) Performing minimization step: 4532. Total energy = 5176.5026 kcal/mol (5173.7962 without restraints) Performing minimization step: 4533. Total energy = 5176.0454 kcal/mol (5173.3397 without restraints) Performing minimization step: 4534. Total energy = 5175.5886 kcal/mol (5172.8837 without restraints) Performing minimization step: 4535. Total energy = 5175.1323 kcal/mol (5172.4280 without restraints) Performing minimization step: 4536. Total energy = 5174.6757 kcal/mol (5171.9721 without restraints) Performing minimization step: 4537. Total energy = 5174.2194 kcal/mol (5171.5166 without restraints) Performing minimization step: 4538. Total energy = 5173.7637 kcal/mol (5171.0615 without restraints) Performing minimization step: 4539. Total energy = 5173.3084 kcal/mol (5170.6070 without restraints) Performing minimization step: 4540. Total energy = 5172.8538 kcal/mol (5170.1534 without restraints) Performing minimization step: 4541. Total energy = 5172.3992 kcal/mol (5169.6990 without restraints) Performing minimization step: 4542. Total energy = 5171.9450 kcal/mol (5169.2456 without restraints) Performing minimization step: 4543. Total energy = 5171.4908 kcal/mol (5168.7922 without restraints) Performing minimization step: 4544. Total energy = 5171.0380 kcal/mol (5168.3400 without restraints) Performing minimization step: 4545. Total energy = 5170.5849 kcal/mol (5167.8877 without restraints) Performing minimization step: 4546. Total energy = 5170.1321 kcal/mol (5167.4356 without restraints) Performing minimization step: 4547. Total energy = 5169.6796 kcal/mol (5166.9840 without restraints) Performing minimization step: 4548. Total energy = 5169.2271 kcal/mol (5166.5321 without restraints) Performing minimization step: 4549. Total energy = 5168.7750 kcal/mol (5166.0806 without restraints) Performing minimization step: 4550. Total energy = 5168.3232 kcal/mol (5165.6296 without restraints) Performing minimization step: 4551. Total energy = 5167.8717 kcal/mol (5165.1787 without restraints) Performing minimization step: 4552. Total energy = 5167.4202 kcal/mol (5164.7279 without restraints) Performing minimization step: 4553. Total energy = 5166.9691 kcal/mol (5164.2776 without restraints) Performing minimization step: 4554. Total energy = 5166.5183 kcal/mol (5163.8274 without restraints) Performing minimization step: 4555. Total energy = 5166.0679 kcal/mol (5163.3778 without restraints) Performing minimization step: 4556. Total energy = 5165.6174 kcal/mol (5162.9280 without restraints) Performing minimization step: 4557. Total energy = 5165.1674 kcal/mol (5162.4786 without restraints) Performing minimization step: 4558. Total energy = 5164.7177 kcal/mol (5162.0297 without restraints) Performing minimization step: 4559. Total energy = 5164.2683 kcal/mol (5161.5809 without restraints) Performing minimization step: 4560. Total energy = 5163.8191 kcal/mol (5161.1324 without restraints) Performing minimization step: 4561. Total energy = 5163.3703 kcal/mol (5160.6844 without restraints) Performing minimization step: 4562. Total energy = 5162.9226 kcal/mol (5160.2373 without restraints) Performing minimization step: 4563. Total energy = 5162.4748 kcal/mol (5159.7902 without restraints) Performing minimization step: 4564. Total energy = 5162.0272 kcal/mol (5159.3436 without restraints) Performing minimization step: 4565. Total energy = 5161.5797 kcal/mol (5158.8965 without restraints) Performing minimization step: 4566. Total energy = 5161.1324 kcal/mol (5158.4501 without restraints) Performing minimization step: 4567. Total energy = 5160.6855 kcal/mol (5158.0037 without restraints) Performing minimization step: 4568. Total energy = 5160.2387 kcal/mol (5157.5576 without restraints) Performing minimization step: 4569. Total energy = 5159.7923 kcal/mol (5157.1119 without restraints) Performing minimization step: 4570. Total energy = 5159.3463 kcal/mol (5156.6667 without restraints) Performing minimization step: 4571. Total energy = 5158.9004 kcal/mol (5156.2215 without restraints) Performing minimization step: 4572. Total energy = 5158.4550 kcal/mol (5155.7767 without restraints) Performing minimization step: 4573. Total energy = 5158.0102 kcal/mol (5155.3327 without restraints) Performing minimization step: 4574. Total energy = 5157.5651 kcal/mol (5154.8881 without restraints) Performing minimization step: 4575. Total energy = 5157.1203 kcal/mol (5154.4442 without restraints) Performing minimization step: 4576. Total energy = 5156.6759 kcal/mol (5154.0005 without restraints) Performing minimization step: 4577. Total energy = 5156.2321 kcal/mol (5153.5575 without restraints) Performing minimization step: 4578. Total energy = 5155.7886 kcal/mol (5153.1147 without restraints) Performing minimization step: 4579. Total energy = 5155.3460 kcal/mol (5152.6728 without restraints) Performing minimization step: 4580. Total energy = 5154.9031 kcal/mol (5152.2305 without restraints) Performing minimization step: 4581. Total energy = 5154.4604 kcal/mol (5151.7887 without restraints) Performing minimization step: 4582. Total energy = 5154.0184 kcal/mol (5151.3472 without restraints) Performing minimization step: 4583. Total energy = 5153.5765 kcal/mol (5150.9060 without restraints) Performing minimization step: 4584. Total energy = 5153.1349 kcal/mol (5150.4651 without restraints) Performing minimization step: 4585. Total energy = 5152.6928 kcal/mol (5150.0237 without restraints) Performing minimization step: 4586. Total energy = 5152.2513 kcal/mol (5149.5829 without restraints) Performing minimization step: 4587. Total energy = 5151.8105 kcal/mol (5149.1430 without restraints) Performing minimization step: 4588. Total energy = 5151.3699 kcal/mol (5148.7028 without restraints) Performing minimization step: 4589. Total energy = 5150.9292 kcal/mol (5148.2630 without restraints) Performing minimization step: 4590. Total energy = 5150.4890 kcal/mol (5147.8234 without restraints) Performing minimization step: 4591. Total energy = 5150.0492 kcal/mol (5147.3845 without restraints) Performing minimization step: 4592. Total energy = 5149.6097 kcal/mol (5146.9455 without restraints) Performing minimization step: 4593. Total energy = 5149.1703 kcal/mol (5146.5068 without restraints) Performing minimization step: 4594. Total energy = 5148.7316 kcal/mol (5146.0688 without restraints) Performing minimization step: 4595. Total energy = 5148.2931 kcal/mol (5145.6310 without restraints) Performing minimization step: 4596. Total energy = 5147.8545 kcal/mol (5145.1931 without restraints) Performing minimization step: 4597. Total energy = 5147.4166 kcal/mol (5144.7561 without restraints) Performing minimization step: 4598. Total energy = 5146.9792 kcal/mol (5144.3193 without restraints) Performing minimization step: 4599. Total energy = 5146.5418 kcal/mol (5143.8825 without restraints) Performing minimization step: 4600. Total energy = 5146.1048 kcal/mol (5143.4463 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 5145.6685 kcal/mol (5143.0106 without restraints) Performing minimization step: 4602. Total energy = 5145.2316 kcal/mol (5142.5744 without restraints) Performing minimization step: 4603. Total energy = 5144.7951 kcal/mol (5142.1386 without restraints) Performing minimization step: 4604. Total energy = 5144.3588 kcal/mol (5141.7030 without restraints) Performing minimization step: 4605. Total energy = 5143.9231 kcal/mol (5141.2680 without restraints) Performing minimization step: 4606. Total energy = 5143.4874 kcal/mol (5140.8330 without restraints) Performing minimization step: 4607. Total energy = 5143.0520 kcal/mol (5140.3983 without restraints) Performing minimization step: 4608. Total energy = 5142.6172 kcal/mol (5139.9643 without restraints) Performing minimization step: 4609. Total energy = 5142.1827 kcal/mol (5139.5303 without restraints) Performing minimization step: 4610. Total energy = 5141.7481 kcal/mol (5139.0965 without restraints) Performing minimization step: 4611. Total energy = 5141.3139 kcal/mol (5138.6630 without restraints) Performing minimization step: 4612. Total energy = 5140.8802 kcal/mol (5138.2300 without restraints) Performing minimization step: 4613. Total energy = 5140.4466 kcal/mol (5137.7972 without restraints) Performing minimization step: 4614. Total energy = 5140.0134 kcal/mol (5137.3645 without restraints) Performing minimization step: 4615. Total energy = 5139.5804 kcal/mol (5136.9323 without restraints) Performing minimization step: 4616. Total energy = 5139.1482 kcal/mol (5136.5010 without restraints) Performing minimization step: 4617. Total energy = 5138.7160 kcal/mol (5136.0694 without restraints) Performing minimization step: 4618. Total energy = 5138.2839 kcal/mol (5135.6379 without restraints) Performing minimization step: 4619. Total energy = 5137.8522 kcal/mol (5135.2071 without restraints) Performing minimization step: 4620. Total energy = 5137.4208 kcal/mol (5134.7762 without restraints) Performing minimization step: 4621. Total energy = 5136.9896 kcal/mol (5134.3457 without restraints) Performing minimization step: 4622. Total energy = 5136.5589 kcal/mol (5133.9158 without restraints) Performing minimization step: 4623. Total energy = 5136.1283 kcal/mol (5133.4858 without restraints) Performing minimization step: 4624. Total energy = 5135.6979 kcal/mol (5133.0562 without restraints) Performing minimization step: 4625. Total energy = 5135.2678 kcal/mol (5132.6267 without restraints) Performing minimization step: 4626. Total energy = 5134.8381 kcal/mol (5132.1977 without restraints) Performing minimization step: 4627. Total energy = 5134.4086 kcal/mol (5131.7689 without restraints) Performing minimization step: 4628. Total energy = 5133.9794 kcal/mol (5131.3405 without restraints) Performing minimization step: 4629. Total energy = 5133.5505 kcal/mol (5130.9123 without restraints) Performing minimization step: 4630. Total energy = 5133.1219 kcal/mol (5130.4844 without restraints) Performing minimization step: 4631. Total energy = 5132.6936 kcal/mol (5130.0568 without restraints) Performing minimization step: 4632. Total energy = 5132.2657 kcal/mol (5129.6295 without restraints) Performing minimization step: 4633. Total energy = 5131.8380 kcal/mol (5129.2025 without restraints) Performing minimization step: 4634. Total energy = 5131.4103 kcal/mol (5128.7755 without restraints) Performing minimization step: 4635. Total energy = 5130.9827 kcal/mol (5128.3486 without restraints) Performing minimization step: 4636. Total energy = 5130.5561 kcal/mol (5127.9228 without restraints) Performing minimization step: 4637. Total energy = 5130.1294 kcal/mol (5127.4967 without restraints) Performing minimization step: 4638. Total energy = 5129.7032 kcal/mol (5127.0712 without restraints) Performing minimization step: 4639. Total energy = 5129.2772 kcal/mol (5126.6458 without restraints) Performing minimization step: 4640. Total energy = 5128.8510 kcal/mol (5126.2204 without restraints) Performing minimization step: 4641. Total energy = 5128.4253 kcal/mol (5125.7954 without restraints) Performing minimization step: 4642. Total energy = 5128.0002 kcal/mol (5125.3710 without restraints) Performing minimization step: 4643. Total energy = 5127.5753 kcal/mol (5124.9468 without restraints) Performing minimization step: 4644. Total energy = 5127.1506 kcal/mol (5124.5228 without restraints) Performing minimization step: 4645. Total energy = 5126.7262 kcal/mol (5124.0991 without restraints) Performing minimization step: 4646. Total energy = 5126.3019 kcal/mol (5123.6754 without restraints) Performing minimization step: 4647. Total energy = 5125.8780 kcal/mol (5123.2522 without restraints) Performing minimization step: 4648. Total energy = 5125.4542 kcal/mol (5122.8292 without restraints) Performing minimization step: 4649. Total energy = 5125.0308 kcal/mol (5122.4064 without restraints) Performing minimization step: 4650. Total energy = 5124.6077 kcal/mol (5121.9841 without restraints) Performing minimization step: 4651. Total energy = 5124.1851 kcal/mol (5121.5621 without restraints) Performing minimization step: 4652. Total energy = 5123.7623 kcal/mol (5121.1401 without restraints) Performing minimization step: 4653. Total energy = 5123.3402 kcal/mol (5120.7186 without restraints) Performing minimization step: 4654. Total energy = 5122.9181 kcal/mol (5120.2972 without restraints) Performing minimization step: 4655. Total energy = 5122.4966 kcal/mol (5119.8764 without restraints) Performing minimization step: 4656. Total energy = 5122.0753 kcal/mol (5119.4560 without restraints) Performing minimization step: 4657. Total energy = 5121.6542 kcal/mol (5119.0354 without restraints) Performing minimization step: 4658. Total energy = 5121.2335 kcal/mol (5118.6154 without restraints) Performing minimization step: 4659. Total energy = 5120.8127 kcal/mol (5118.1953 without restraints) Performing minimization step: 4660. Total energy = 5120.3923 kcal/mol (5117.7756 without restraints) Performing minimization step: 4661. Total energy = 5119.9722 kcal/mol (5117.3561 without restraints) Performing minimization step: 4662. Total energy = 5119.5525 kcal/mol (5116.9372 without restraints) Performing minimization step: 4663. Total energy = 5119.1326 kcal/mol (5116.5180 without restraints) Performing minimization step: 4664. Total energy = 5118.7130 kcal/mol (5116.0991 without restraints) Performing minimization step: 4665. Total energy = 5118.2945 kcal/mol (5115.6815 without restraints) Performing minimization step: 4666. Total energy = 5117.8762 kcal/mol (5115.2639 without restraints) Performing minimization step: 4667. Total energy = 5117.4584 kcal/mol (5114.8468 without restraints) Performing minimization step: 4668. Total energy = 5117.0405 kcal/mol (5114.4292 without restraints) Performing minimization step: 4669. Total energy = 5116.6224 kcal/mol (5114.0120 without restraints) Performing minimization step: 4670. Total energy = 5116.2048 kcal/mol (5113.5950 without restraints) Performing minimization step: 4671. Total energy = 5115.7874 kcal/mol (5113.1785 without restraints) Performing minimization step: 4672. Total energy = 5115.3707 kcal/mol (5112.7623 without restraints) Performing minimization step: 4673. Total energy = 5114.9541 kcal/mol (5112.3465 without restraints) Performing minimization step: 4674. Total energy = 5114.5379 kcal/mol (5111.9309 without restraints) Performing minimization step: 4675. Total energy = 5114.1219 kcal/mol (5111.5156 without restraints) Performing minimization step: 4676. Total energy = 5113.7060 kcal/mol (5111.1004 without restraints) Performing minimization step: 4677. Total energy = 5113.2904 kcal/mol (5110.6855 without restraints) Performing minimization step: 4678. Total energy = 5112.8751 kcal/mol (5110.2710 without restraints) Performing minimization step: 4679. Total energy = 5112.4599 kcal/mol (5109.8565 without restraints) Performing minimization step: 4680. Total energy = 5112.0453 kcal/mol (5109.4426 without restraints) Performing minimization step: 4681. Total energy = 5111.6306 kcal/mol (5109.0285 without restraints) Performing minimization step: 4682. Total energy = 5111.2164 kcal/mol (5108.6149 without restraints) Performing minimization step: 4683. Total energy = 5110.8022 kcal/mol (5108.2015 without restraints) Performing minimization step: 4684. Total energy = 5110.3887 kcal/mol (5107.7888 without restraints) Performing minimization step: 4685. Total energy = 5109.9753 kcal/mol (5107.3761 without restraints) Performing minimization step: 4686. Total energy = 5109.5622 kcal/mol (5106.9635 without restraints) Performing minimization step: 4687. Total energy = 5109.1491 kcal/mol (5106.5512 without restraints) Performing minimization step: 4688. Total energy = 5108.7367 kcal/mol (5106.1394 without restraints) Performing minimization step: 4689. Total energy = 5108.3243 kcal/mol (5105.7278 without restraints) Performing minimization step: 4690. Total energy = 5107.9121 kcal/mol (5105.3162 without restraints) Performing minimization step: 4691. Total energy = 5107.5002 kcal/mol (5104.9049 without restraints) Performing minimization step: 4692. Total energy = 5107.0883 kcal/mol (5104.4938 without restraints) Performing minimization step: 4693. Total energy = 5106.6768 kcal/mol (5104.0830 without restraints) Performing minimization step: 4694. Total energy = 5106.2657 kcal/mol (5103.6727 without restraints) Performing minimization step: 4695. Total energy = 5105.8546 kcal/mol (5103.2622 without restraints) Performing minimization step: 4696. Total energy = 5105.4440 kcal/mol (5102.8523 without restraints) Performing minimization step: 4697. Total energy = 5105.0338 kcal/mol (5102.4428 without restraints) Performing minimization step: 4698. Total energy = 5104.6239 kcal/mol (5102.0336 without restraints) Performing minimization step: 4699. Total energy = 5104.2142 kcal/mol (5101.6246 without restraints) Performing minimization step: 4700. Total energy = 5103.8049 kcal/mol (5101.2160 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 5103.3958 kcal/mol (5100.8076 without restraints) Performing minimization step: 4702. Total energy = 5102.9874 kcal/mol (5100.3998 without restraints) Performing minimization step: 4703. Total energy = 5102.5785 kcal/mol (5099.9916 without restraints) Performing minimization step: 4704. Total energy = 5102.1707 kcal/mol (5099.5847 without restraints) Performing minimization step: 4705. Total energy = 5101.7633 kcal/mol (5099.1778 without restraints) Performing minimization step: 4706. Total energy = 5101.3557 kcal/mol (5098.7709 without restraints) Performing minimization step: 4707. Total energy = 5100.9480 kcal/mol (5098.3640 without restraints) Performing minimization step: 4708. Total energy = 5100.5406 kcal/mol (5097.9572 without restraints) Performing minimization step: 4709. Total energy = 5100.1338 kcal/mol (5097.5512 without restraints) Performing minimization step: 4710. Total energy = 5099.7270 kcal/mol (5097.1450 without restraints) Performing minimization step: 4711. Total energy = 5099.3206 kcal/mol (5096.7393 without restraints) Performing minimization step: 4712. Total energy = 5098.9142 kcal/mol (5096.3336 without restraints) Performing minimization step: 4713. Total energy = 5098.5080 kcal/mol (5095.9281 without restraints) Performing minimization step: 4714. Total energy = 5098.1026 kcal/mol (5095.5233 without restraints) Performing minimization step: 4715. Total energy = 5097.6971 kcal/mol (5095.1186 without restraints) Performing minimization step: 4716. Total energy = 5097.2921 kcal/mol (5094.7143 without restraints) Performing minimization step: 4717. Total energy = 5096.8870 kcal/mol (5094.3098 without restraints) Performing minimization step: 4718. Total energy = 5096.4826 kcal/mol (5093.9061 without restraints) Performing minimization step: 4719. Total energy = 5096.0780 kcal/mol (5093.5022 without restraints) Performing minimization step: 4720. Total energy = 5095.6737 kcal/mol (5093.0986 without restraints) Performing minimization step: 4721. Total energy = 5095.2698 kcal/mol (5092.6954 without restraints) Performing minimization step: 4722. Total energy = 5094.8661 kcal/mol (5092.2925 without restraints) Performing minimization step: 4723. Total energy = 5094.4627 kcal/mol (5091.8897 without restraints) Performing minimization step: 4724. Total energy = 5094.0595 kcal/mol (5091.4872 without restraints) Performing minimization step: 4725. Total energy = 5093.6561 kcal/mol (5091.0845 without restraints) Performing minimization step: 4726. Total energy = 5093.2534 kcal/mol (5090.6824 without restraints) Performing minimization step: 4727. Total energy = 5092.8510 kcal/mol (5090.2807 without restraints) Performing minimization step: 4728. Total energy = 5092.4490 kcal/mol (5089.8794 without restraints) Performing minimization step: 4729. Total energy = 5092.0474 kcal/mol (5089.4785 without restraints) Performing minimization step: 4730. Total energy = 5091.6455 kcal/mol (5089.0771 without restraints) Performing minimization step: 4731. Total energy = 5091.2439 kcal/mol (5088.6763 without restraints) Performing minimization step: 4732. Total energy = 5090.8423 kcal/mol (5088.2755 without restraints) Performing minimization step: 4733. Total energy = 5090.4414 kcal/mol (5087.8753 without restraints) Performing minimization step: 4734. Total energy = 5090.0411 kcal/mol (5087.4758 without restraints) Performing minimization step: 4735. Total energy = 5089.6411 kcal/mol (5087.0764 without restraints) Performing minimization step: 4736. Total energy = 5089.2412 kcal/mol (5086.6771 without restraints) Performing minimization step: 4737. Total energy = 5088.8410 kcal/mol (5086.2778 without restraints) Performing minimization step: 4738. Total energy = 5088.4421 kcal/mol (5085.8795 without restraints) Performing minimization step: 4739. Total energy = 5088.0430 kcal/mol (5085.4810 without restraints) Performing minimization step: 4740. Total energy = 5087.6440 kcal/mol (5085.0827 without restraints) Performing minimization step: 4741. Total energy = 5087.2452 kcal/mol (5084.6846 without restraints) Performing minimization step: 4742. Total energy = 5086.8467 kcal/mol (5084.2868 without restraints) Performing minimization step: 4743. Total energy = 5086.4487 kcal/mol (5083.8894 without restraints) Performing minimization step: 4744. Total energy = 5086.0510 kcal/mol (5083.4925 without restraints) Performing minimization step: 4745. Total energy = 5085.6529 kcal/mol (5083.0950 without restraints) Performing minimization step: 4746. Total energy = 5085.2556 kcal/mol (5082.6986 without restraints) Performing minimization step: 4747. Total energy = 5084.8588 kcal/mol (5082.3023 without restraints) Performing minimization step: 4748. Total energy = 5084.4620 kcal/mol (5081.9062 without restraints) Performing minimization step: 4749. Total energy = 5084.0652 kcal/mol (5081.5101 without restraints) Performing minimization step: 4750. Total energy = 5083.6689 kcal/mol (5081.1145 without restraints) Performing minimization step: 4751. Total energy = 5083.2728 kcal/mol (5080.7189 without restraints) Performing minimization step: 4752. Total energy = 5082.8767 kcal/mol (5080.3236 without restraints) Performing minimization step: 4753. Total energy = 5082.4808 kcal/mol (5079.9284 without restraints) Performing minimization step: 4754. Total energy = 5082.0851 kcal/mol (5079.5334 without restraints) Performing minimization step: 4755. Total energy = 5081.6900 kcal/mol (5079.1390 without restraints) Performing minimization step: 4756. Total energy = 5081.2953 kcal/mol (5078.7450 without restraints) Performing minimization step: 4757. Total energy = 5080.9010 kcal/mol (5078.3514 without restraints) Performing minimization step: 4758. Total energy = 5080.5069 kcal/mol (5077.9580 without restraints) Performing minimization step: 4759. Total energy = 5080.1126 kcal/mol (5077.5644 without restraints) Performing minimization step: 4760. Total energy = 5079.7187 kcal/mol (5077.1712 without restraints) Performing minimization step: 4761. Total energy = 5079.3253 kcal/mol (5076.7785 without restraints) Performing minimization step: 4762. Total energy = 5078.9319 kcal/mol (5076.3858 without restraints) Performing minimization step: 4763. Total energy = 5078.5389 kcal/mol (5075.9937 without restraints) Performing minimization step: 4764. Total energy = 5078.1463 kcal/mol (5075.6015 without restraints) Performing minimization step: 4765. Total energy = 5077.7537 kcal/mol (5075.2096 without restraints) Performing minimization step: 4766. Total energy = 5077.3617 kcal/mol (5074.8183 without restraints) Performing minimization step: 4767. Total energy = 5076.9697 kcal/mol (5074.4271 without restraints) Performing minimization step: 4768. Total energy = 5076.5780 kcal/mol (5074.0359 without restraints) Performing minimization step: 4769. Total energy = 5076.1863 kcal/mol (5073.6450 without restraints) Performing minimization step: 4770. Total energy = 5075.7953 kcal/mol (5073.2547 without restraints) Performing minimization step: 4771. Total energy = 5075.4043 kcal/mol (5072.8643 without restraints) Performing minimization step: 4772. Total energy = 5075.0137 kcal/mol (5072.4747 without restraints) Performing minimization step: 4773. Total energy = 5074.6233 kcal/mol (5072.0847 without restraints) Performing minimization step: 4774. Total energy = 5074.2334 kcal/mol (5071.6955 without restraints) Performing minimization step: 4775. Total energy = 5073.8438 kcal/mol (5071.3065 without restraints) Performing minimization step: 4776. Total energy = 5073.4539 kcal/mol (5070.9174 without restraints) Performing minimization step: 4777. Total energy = 5073.0643 kcal/mol (5070.5285 without restraints) Performing minimization step: 4778. Total energy = 5072.6752 kcal/mol (5070.1400 without restraints) Performing minimization step: 4779. Total energy = 5072.2861 kcal/mol (5069.7516 without restraints) Performing minimization step: 4780. Total energy = 5071.8976 kcal/mol (5069.3641 without restraints) Performing minimization step: 4781. Total energy = 5071.5091 kcal/mol (5068.9760 without restraints) Performing minimization step: 4782. Total energy = 5071.1206 kcal/mol (5068.5881 without restraints) Performing minimization step: 4783. Total energy = 5070.7324 kcal/mol (5068.2006 without restraints) Performing minimization step: 4784. Total energy = 5070.3449 kcal/mol (5067.8139 without restraints) Performing minimization step: 4785. Total energy = 5069.9578 kcal/mol (5067.4274 without restraints) Performing minimization step: 4786. Total energy = 5069.5709 kcal/mol (5067.0414 without restraints) Performing minimization step: 4787. Total energy = 5069.1840 kcal/mol (5066.6551 without restraints) Performing minimization step: 4788. Total energy = 5068.7974 kcal/mol (5066.2691 without restraints) Performing minimization step: 4789. Total energy = 5068.4112 kcal/mol (5065.8835 without restraints) Performing minimization step: 4790. Total energy = 5068.0254 kcal/mol (5065.4985 without restraints) Performing minimization step: 4791. Total energy = 5067.6393 kcal/mol (5065.1131 without restraints) Performing minimization step: 4792. Total energy = 5067.2537 kcal/mol (5064.7281 without restraints) Performing minimization step: 4793. Total energy = 5066.8684 kcal/mol (5064.3434 without restraints) Performing minimization step: 4794. Total energy = 5066.4828 kcal/mol (5063.9586 without restraints) Performing minimization step: 4795. Total energy = 5066.0978 kcal/mol (5063.5743 without restraints) Performing minimization step: 4796. Total energy = 5065.7133 kcal/mol (5063.1904 without restraints) Performing minimization step: 4797. Total energy = 5065.3289 kcal/mol (5062.8067 without restraints) Performing minimization step: 4798. Total energy = 5064.9449 kcal/mol (5062.4234 without restraints) Performing minimization step: 4799. Total energy = 5064.5609 kcal/mol (5062.0401 without restraints) Performing minimization step: 4800. Total energy = 5064.1773 kcal/mol (5061.6573 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 5063.7941 kcal/mol (5061.2748 without restraints) Performing minimization step: 4802. Total energy = 5063.4111 kcal/mol (5060.8923 without restraints) Performing minimization step: 4803. Total energy = 5063.0280 kcal/mol (5060.5099 without restraints) Performing minimization step: 4804. Total energy = 5062.6449 kcal/mol (5060.1275 without restraints) Performing minimization step: 4805. Total energy = 5062.2626 kcal/mol (5059.7461 without restraints) Performing minimization step: 4806. Total energy = 5061.8806 kcal/mol (5059.3646 without restraints) Performing minimization step: 4807. Total energy = 5061.4992 kcal/mol (5058.9838 without restraints) Performing minimization step: 4808. Total energy = 5061.1175 kcal/mol (5058.6028 without restraints) Performing minimization step: 4809. Total energy = 5060.7364 kcal/mol (5058.2224 without restraints) Performing minimization step: 4810. Total energy = 5060.3553 kcal/mol (5057.8421 without restraints) Performing minimization step: 4811. Total energy = 5059.9741 kcal/mol (5057.4615 without restraints) Performing minimization step: 4812. Total energy = 5059.5933 kcal/mol (5057.0814 without restraints) Performing minimization step: 4813. Total energy = 5059.2132 kcal/mol (5056.7020 without restraints) Performing minimization step: 4814. Total energy = 5058.8334 kcal/mol (5056.3229 without restraints) Performing minimization step: 4815. Total energy = 5058.4533 kcal/mol (5055.9434 without restraints) Performing minimization step: 4816. Total energy = 5058.0735 kcal/mol (5055.5644 without restraints) Performing minimization step: 4817. Total energy = 5057.6946 kcal/mol (5055.1860 without restraints) Performing minimization step: 4818. Total energy = 5057.3151 kcal/mol (5054.8073 without restraints) Performing minimization step: 4819. Total energy = 5056.9361 kcal/mol (5054.4289 without restraints) Performing minimization step: 4820. Total energy = 5056.5571 kcal/mol (5054.0507 without restraints) Performing minimization step: 4821. Total energy = 5056.1785 kcal/mol (5053.6727 without restraints) Performing minimization step: 4822. Total energy = 5055.8005 kcal/mol (5053.2954 without restraints) Performing minimization step: 4823. Total energy = 5055.4222 kcal/mol (5052.9178 without restraints) Performing minimization step: 4824. Total energy = 5055.0444 kcal/mol (5052.5409 without restraints) Performing minimization step: 4825. Total energy = 5054.6672 kcal/mol (5052.1642 without restraints) Performing minimization step: 4826. Total energy = 5054.2900 kcal/mol (5051.7877 without restraints) Performing minimization step: 4827. Total energy = 5053.9129 kcal/mol (5051.4112 without restraints) Performing minimization step: 4828. Total energy = 5053.5358 kcal/mol (5051.0348 without restraints) Performing minimization step: 4829. Total energy = 5053.1590 kcal/mol (5050.6587 without restraints) Performing minimization step: 4830. Total energy = 5052.7827 kcal/mol (5050.2833 without restraints) Performing minimization step: 4831. Total energy = 5052.4066 kcal/mol (5049.9077 without restraints) Performing minimization step: 4832. Total energy = 5052.0308 kcal/mol (5049.5325 without restraints) Performing minimization step: 4833. Total energy = 5051.6554 kcal/mol (5049.1578 without restraints) Performing minimization step: 4834. Total energy = 5051.2799 kcal/mol (5048.7830 without restraints) Performing minimization step: 4835. Total energy = 5050.9047 kcal/mol (5048.4084 without restraints) Performing minimization step: 4836. Total energy = 5050.5295 kcal/mol (5048.0340 without restraints) Performing minimization step: 4837. Total energy = 5050.1551 kcal/mol (5047.6602 without restraints) Performing minimization step: 4838. Total energy = 5049.7816 kcal/mol (5047.2874 without restraints) Performing minimization step: 4839. Total energy = 5049.4072 kcal/mol (5046.9137 without restraints) Performing minimization step: 4840. Total energy = 5049.0337 kcal/mol (5046.5409 without restraints) Performing minimization step: 4841. Total energy = 5048.6596 kcal/mol (5046.1674 without restraints) Performing minimization step: 4842. Total energy = 5048.2863 kcal/mol (5045.7948 without restraints) Performing minimization step: 4843. Total energy = 5047.9129 kcal/mol (5045.4221 without restraints) Performing minimization step: 4844. Total energy = 5047.5397 kcal/mol (5045.0496 without restraints) Performing minimization step: 4845. Total energy = 5047.1673 kcal/mol (5044.6778 without restraints) Performing minimization step: 4846. Total energy = 5046.7948 kcal/mol (5044.3063 without restraints) Performing minimization step: 4847. Total energy = 5046.4231 kcal/mol (5043.9350 without restraints) Performing minimization step: 4848. Total energy = 5046.0506 kcal/mol (5043.5632 without restraints) Performing minimization step: 4849. Total energy = 5045.6788 kcal/mol (5043.1922 without restraints) Performing minimization step: 4850. Total energy = 5045.3072 kcal/mol (5042.8211 without restraints) Performing minimization step: 4851. Total energy = 5044.9358 kcal/mol (5042.4505 without restraints) Performing minimization step: 4852. Total energy = 5044.5646 kcal/mol (5042.0799 without restraints) Performing minimization step: 4853. Total energy = 5044.1936 kcal/mol (5041.7096 without restraints) Performing minimization step: 4854. Total energy = 5043.8230 kcal/mol (5041.3399 without restraints) Performing minimization step: 4855. Total energy = 5043.4531 kcal/mol (5040.9704 without restraints) Performing minimization step: 4856. Total energy = 5043.0832 kcal/mol (5040.6012 without restraints) Performing minimization step: 4857. Total energy = 5042.7133 kcal/mol (5040.2320 without restraints) Performing minimization step: 4858. Total energy = 5042.3438 kcal/mol (5039.8635 without restraints) Performing minimization step: 4859. Total energy = 5041.9748 kcal/mol (5039.4948 without restraints) Performing minimization step: 4860. Total energy = 5041.6056 kcal/mol (5039.1263 without restraints) Performing minimization step: 4861. Total energy = 5041.2366 kcal/mol (5038.7580 without restraints) Performing minimization step: 4862. Total energy = 5040.8677 kcal/mol (5038.3898 without restraints) Performing minimization step: 4863. Total energy = 5040.4992 kcal/mol (5038.0220 without restraints) Performing minimization step: 4864. Total energy = 5040.1310 kcal/mol (5037.6545 without restraints) Performing minimization step: 4865. Total energy = 5039.7624 kcal/mol (5037.2865 without restraints) Performing minimization step: 4866. Total energy = 5039.3947 kcal/mol (5036.9195 without restraints) Performing minimization step: 4867. Total energy = 5039.0270 kcal/mol (5036.5526 without restraints) Performing minimization step: 4868. Total energy = 5038.6597 kcal/mol (5036.1860 without restraints) Performing minimization step: 4869. Total energy = 5038.2931 kcal/mol (5035.8201 without restraints) Performing minimization step: 4870. Total energy = 5037.9259 kcal/mol (5035.4535 without restraints) Performing minimization step: 4871. Total energy = 5037.5592 kcal/mol (5035.0873 without restraints) Performing minimization step: 4872. Total energy = 5037.1930 kcal/mol (5034.7218 without restraints) Performing minimization step: 4873. Total energy = 5036.8264 kcal/mol (5034.3559 without restraints) Performing minimization step: 4874. Total energy = 5036.4602 kcal/mol (5033.9904 without restraints) Performing minimization step: 4875. Total energy = 5036.0945 kcal/mol (5033.6254 without restraints) Performing minimization step: 4876. Total energy = 5035.7290 kcal/mol (5033.2606 without restraints) Performing minimization step: 4877. Total energy = 5035.3639 kcal/mol (5032.8963 without restraints) Performing minimization step: 4878. Total energy = 5034.9989 kcal/mol (5032.5318 without restraints) Performing minimization step: 4879. Total energy = 5034.6339 kcal/mol (5032.1673 without restraints) Performing minimization step: 4880. Total energy = 5034.2690 kcal/mol (5031.8033 without restraints) Performing minimization step: 4881. Total energy = 5033.9046 kcal/mol (5031.4395 without restraints) Performing minimization step: 4882. Total energy = 5033.5404 kcal/mol (5031.0760 without restraints) Performing minimization step: 4883. Total energy = 5033.1765 kcal/mol (5030.7129 without restraints) Performing minimization step: 4884. Total energy = 5032.8130 kcal/mol (5030.3500 without restraints) Performing minimization step: 4885. Total energy = 5032.4497 kcal/mol (5029.9876 without restraints) Performing minimization step: 4886. Total energy = 5032.0874 kcal/mol (5029.6257 without restraints) Performing minimization step: 4887. Total energy = 5031.7245 kcal/mol (5029.2636 without restraints) Performing minimization step: 4888. Total energy = 5031.3620 kcal/mol (5028.9017 without restraints) Performing minimization step: 4889. Total energy = 5030.9997 kcal/mol (5028.5402 without restraints) Performing minimization step: 4890. Total energy = 5030.6375 kcal/mol (5028.1785 without restraints) Performing minimization step: 4891. Total energy = 5030.2756 kcal/mol (5027.8173 without restraints) Performing minimization step: 4892. Total energy = 5029.9142 kcal/mol (5027.4568 without restraints) Performing minimization step: 4893. Total energy = 5029.5532 kcal/mol (5027.0962 without restraints) Performing minimization step: 4894. Total energy = 5029.1917 kcal/mol (5026.7354 without restraints) Performing minimization step: 4895. Total energy = 5028.8309 kcal/mol (5026.3753 without restraints) Performing minimization step: 4896. Total energy = 5028.4702 kcal/mol (5026.0152 without restraints) Performing minimization step: 4897. Total energy = 5028.1094 kcal/mol (5025.6551 without restraints) Performing minimization step: 4898. Total energy = 5027.7487 kcal/mol (5025.2952 without restraints) Performing minimization step: 4899. Total energy = 5027.3888 kcal/mol (5024.9359 without restraints) Performing minimization step: 4900. Total energy = 5027.0290 kcal/mol (5024.5767 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 5026.6691 kcal/mol (5024.2176 without restraints) Performing minimization step: 4902. Total energy = 5026.3099 kcal/mol (5023.8590 without restraints) Performing minimization step: 4903. Total energy = 5025.9507 kcal/mol (5023.5004 without restraints) Performing minimization step: 4904. Total energy = 5025.5919 kcal/mol (5023.1423 without restraints) Performing minimization step: 4905. Total energy = 5025.2336 kcal/mol (5022.7847 without restraints) Performing minimization step: 4906. Total energy = 5024.8753 kcal/mol (5022.4271 without restraints) Performing minimization step: 4907. Total energy = 5024.5178 kcal/mol (5022.0702 without restraints) Performing minimization step: 4908. Total energy = 5024.1595 kcal/mol (5021.7126 without restraints) Performing minimization step: 4909. Total energy = 5023.8013 kcal/mol (5021.3551 without restraints) Performing minimization step: 4910. Total energy = 5023.4435 kcal/mol (5020.9980 without restraints) Performing minimization step: 4911. Total energy = 5023.0859 kcal/mol (5020.6411 without restraints) Performing minimization step: 4912. Total energy = 5022.7290 kcal/mol (5020.2848 without restraints) Performing minimization step: 4913. Total energy = 5022.3718 kcal/mol (5019.9282 without restraints) Performing minimization step: 4914. Total energy = 5022.0148 kcal/mol (5019.5720 without restraints) Performing minimization step: 4915. Total energy = 5021.6579 kcal/mol (5019.2157 without restraints) Performing minimization step: 4916. Total energy = 5021.3015 kcal/mol (5018.8600 without restraints) Performing minimization step: 4917. Total energy = 5020.9455 kcal/mol (5018.5048 without restraints) Performing minimization step: 4918. Total energy = 5020.5901 kcal/mol (5018.1500 without restraints) Performing minimization step: 4919. Total energy = 5020.2341 kcal/mol (5017.7947 without restraints) Performing minimization step: 4920. Total energy = 5019.8786 kcal/mol (5017.4398 without restraints) Performing minimization step: 4921. Total energy = 5019.5233 kcal/mol (5017.0852 without restraints) Performing minimization step: 4922. Total energy = 5019.1685 kcal/mol (5016.7311 without restraints) Performing minimization step: 4923. Total energy = 5018.8140 kcal/mol (5016.3773 without restraints) Performing minimization step: 4924. Total energy = 5018.4597 kcal/mol (5016.0235 without restraints) Performing minimization step: 4925. Total energy = 5018.1053 kcal/mol (5015.6698 without restraints) Performing minimization step: 4926. Total energy = 5017.7511 kcal/mol (5015.3164 without restraints) Performing minimization step: 4927. Total energy = 5017.3982 kcal/mol (5014.9643 without restraints) Performing minimization step: 4928. Total energy = 5017.0447 kcal/mol (5014.6113 without restraints) Performing minimization step: 4929. Total energy = 5016.6919 kcal/mol (5014.2591 without restraints) Performing minimization step: 4930. Total energy = 5016.3386 kcal/mol (5013.9066 without restraints) Performing minimization step: 4931. Total energy = 5015.9856 kcal/mol (5013.5542 without restraints) Performing minimization step: 4932. Total energy = 5015.6330 kcal/mol (5013.2023 without restraints) Performing minimization step: 4933. Total energy = 5015.2807 kcal/mol (5012.8507 without restraints) Performing minimization step: 4934. Total energy = 5014.9282 kcal/mol (5012.4986 without restraints) Performing minimization step: 4935. Total energy = 5014.5758 kcal/mol (5012.1471 without restraints) Performing minimization step: 4936. Total energy = 5014.2239 kcal/mol (5011.7959 without restraints) Performing minimization step: 4937. Total energy = 5013.8723 kcal/mol (5011.4450 without restraints) Performing minimization step: 4938. Total energy = 5013.5213 kcal/mol (5011.0948 without restraints) Performing minimization step: 4939. Total energy = 5013.1702 kcal/mol (5010.7442 without restraints) Performing minimization step: 4940. Total energy = 5012.8192 kcal/mol (5010.3938 without restraints) Performing minimization step: 4941. Total energy = 5012.4683 kcal/mol (5010.0436 without restraints) Performing minimization step: 4942. Total energy = 5012.1184 kcal/mol (5009.6943 without restraints) Performing minimization step: 4943. Total energy = 5011.7680 kcal/mol (5009.3446 without restraints) Performing minimization step: 4944. Total energy = 5011.4178 kcal/mol (5008.9951 without restraints) Performing minimization step: 4945. Total energy = 5011.0683 kcal/mol (5008.6462 without restraints) Performing minimization step: 4946. Total energy = 5010.7190 kcal/mol (5008.2977 without restraints) Performing minimization step: 4947. Total energy = 5010.3697 kcal/mol (5007.9491 without restraints) Performing minimization step: 4948. Total energy = 5010.0205 kcal/mol (5007.6005 without restraints) Performing minimization step: 4949. Total energy = 5009.6714 kcal/mol (5007.2521 without restraints) Performing minimization step: 4950. Total energy = 5009.3229 kcal/mol (5006.9042 without restraints) Performing minimization step: 4951. Total energy = 5008.9748 kcal/mol (5006.5568 without restraints) Performing minimization step: 4952. Total energy = 5008.6267 kcal/mol (5006.2095 without restraints) Performing minimization step: 4953. Total energy = 5008.2791 kcal/mol (5005.8624 without restraints) Performing minimization step: 4954. Total energy = 5007.9310 kcal/mol (5005.5150 without restraints) Performing minimization step: 4955. Total energy = 5007.5836 kcal/mol (5005.1682 without restraints) Performing minimization step: 4956. Total energy = 5007.2366 kcal/mol (5004.8220 without restraints) Performing minimization step: 4957. Total energy = 5006.8893 kcal/mol (5004.4753 without restraints) Performing minimization step: 4958. Total energy = 5006.5423 kcal/mol (5004.1290 without restraints) Performing minimization step: 4959. Total energy = 5006.1955 kcal/mol (5003.7828 without restraints) Performing minimization step: 4960. Total energy = 5005.8491 kcal/mol (5003.4372 without restraints) Performing minimization step: 4961. Total energy = 5005.5027 kcal/mol (5003.0914 without restraints) Performing minimization step: 4962. Total energy = 5005.1563 kcal/mol (5002.7456 without restraints) Performing minimization step: 4963. Total energy = 5004.8104 kcal/mol (5002.4004 without restraints) Performing minimization step: 4964. Total energy = 5004.4649 kcal/mol (5002.0557 without restraints) Performing minimization step: 4965. Total energy = 5004.1197 kcal/mol (5001.7110 without restraints) Performing minimization step: 4966. Total energy = 5003.7745 kcal/mol (5001.3665 without restraints) Performing minimization step: 4967. Total energy = 5003.4294 kcal/mol (5001.0221 without restraints) Performing minimization step: 4968. Total energy = 5003.0847 kcal/mol (5000.6780 without restraints) Performing minimization step: 4969. Total energy = 5002.7399 kcal/mol (5000.3336 without restraints) Performing minimization step: 4970. Total energy = 5002.3954 kcal/mol (4999.9900 without restraints) Performing minimization step: 4971. Total energy = 5002.0517 kcal/mol (4999.6470 without restraints) Performing minimization step: 4972. Total energy = 5001.7078 kcal/mol (4999.3038 without restraints) Performing minimization step: 4973. Total energy = 5001.3646 kcal/mol (4998.9613 without restraints) Performing minimization step: 4974. Total energy = 5001.0217 kcal/mol (4998.6191 without restraints) Performing minimization step: 4975. Total energy = 5000.6786 kcal/mol (4998.2766 without restraints) Performing minimization step: 4976. Total energy = 5000.3356 kcal/mol (4997.9343 without restraints) Performing minimization step: 4977. Total energy = 4999.9933 kcal/mol (4997.5926 without restraints) Performing minimization step: 4978. Total energy = 4999.6506 kcal/mol (4997.2505 without restraints) Performing minimization step: 4979. Total energy = 4999.3084 kcal/mol (4996.9090 without restraints) Performing minimization step: 4980. Total energy = 4998.9660 kcal/mol (4996.5673 without restraints) Performing minimization step: 4981. Total energy = 4998.6238 kcal/mol (4996.2258 without restraints) Performing minimization step: 4982. Total energy = 4998.2819 kcal/mol (4995.8845 without restraints) Performing minimization step: 4983. Total energy = 4997.9403 kcal/mol (4995.5436 without restraints) Performing minimization step: 4984. Total energy = 4997.5988 kcal/mol (4995.2028 without restraints) Performing minimization step: 4985. Total energy = 4997.2579 kcal/mol (4994.8625 without restraints) Performing minimization step: 4986. Total energy = 4996.9169 kcal/mol (4994.5222 without restraints) Performing minimization step: 4987. Total energy = 4996.5768 kcal/mol (4994.1827 without restraints) Performing minimization step: 4988. Total energy = 4996.2366 kcal/mol (4993.8433 without restraints) Performing minimization step: 4989. Total energy = 4995.8962 kcal/mol (4993.5036 without restraints) Performing minimization step: 4990. Total energy = 4995.5563 kcal/mol (4993.1642 without restraints) Performing minimization step: 4991. Total energy = 4995.2168 kcal/mol (4992.8255 without restraints) Performing minimization step: 4992. Total energy = 4994.8773 kcal/mol (4992.4865 without restraints) Performing minimization step: 4993. Total energy = 4994.5380 kcal/mol (4992.1479 without restraints) Performing minimization step: 4994. Total energy = 4994.1990 kcal/mol (4991.8096 without restraints) Performing minimization step: 4995. Total energy = 4993.8603 kcal/mol (4991.4716 without restraints) Performing minimization step: 4996. Total energy = 4993.5216 kcal/mol (4991.1335 without restraints) Performing minimization step: 4997. Total energy = 4993.1838 kcal/mol (4990.7964 without restraints) Performing minimization step: 4998. Total energy = 4992.8454 kcal/mol (4990.4586 without restraints) Performing minimization step: 4999. Total energy = 4992.5071 kcal/mol (4990.1210 without restraints) Performing minimization step: 5000. Total energy = 4992.1695 kcal/mol (4989.7841 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/03d1a471/tmp/CPMA5_refx/CPMA5_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to CPMA5_refx.pdb DONE!