============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1.pdb ============================================================================= Atom's 1270 C4 residue renamed to RA3 Atom's 1269 N3 residue renamed to RA3 Atom's 1268 C2 residue renamed to RA3 Atom's 1267 N1 residue renamed to RA3 Atom's 1266 N6 residue renamed to RA3 Atom's 1265 C6 residue renamed to RA3 Atom's 1264 C5 residue renamed to RA3 Atom's 1263 N7 residue renamed to RA3 Atom's 1262 C8 residue renamed to RA3 Atom's 1261 N9 residue renamed to RA3 Atom's 1260 C1' residue renamed to RA3 Atom's 1259 O2' residue renamed to RA3 Atom's 1258 C2' residue renamed to RA3 Atom's 1257 O3' residue renamed to RA3 Atom's 1256 C3' residue renamed to RA3 Atom's 1255 O4' residue renamed to RA3 Atom's 1254 C4' residue renamed to RA3 Atom's 1253 C5' residue renamed to RA3 Atom's 1252 O5' residue renamed to RA3 Atom's 1251 OP2 residue renamed to RA3 Atom's 1250 OP1 residue renamed to RA3 Atom's 1249 P residue renamed to RA3 Missing atom added: ATOM 21 H5'1 U A 1 13.796 -5.490 1.120 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 1 12.989 -3.841 1.374 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 1 13.140 -5.031 -0.818 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 1 10.394 -5.062 0.058 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 1 11.863 -8.260 -1.477 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 1 9.881 -6.315 -1.951 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 1 12.036 -5.336 -2.871 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 1 10.743 -7.115 1.655 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 1 8.069 -10.949 -0.628 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 1 9.027 -8.288 2.990 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 2 10.281 -4.395 -3.804 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 2 9.277 -2.897 -4.230 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 2 8.854 -4.883 -5.487 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 2 6.676 -4.048 -3.610 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 2 7.292 -7.767 -4.186 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 2 5.301 -5.802 -4.514 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 2 6.779 -5.631 -6.577 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 2 7.650 -5.293 -1.681 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 2 4.472 -9.301 -0.740 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 2 6.759 -5.555 0.607 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 3 5.174 -4.911 -7.345 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 3 4.103 -3.555 -8.018 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 3 3.406 -5.851 -8.315 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 3 1.750 -4.376 -6.287 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 3 2.514 -8.083 -5.776 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 3 0.354 -6.293 -6.102 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 3 1.124 -6.888 -8.428 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 3 3.378 -4.927 -4.462 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 3 2.390 -5.258 0.141 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 3 1.571 -6.758 0.232 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 3 3.413 -4.025 -1.913 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 4 -1.168 -6.012 -7.867 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 4 -2.502 -4.829 -8.371 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 4 -3.288 -6.296 -6.826 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 4 -3.372 -3.420 -6.538 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 4 -2.820 -5.396 -3.353 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 4 -4.666 -3.650 -4.564 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 4 -5.280 -5.958 -5.367 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 4 -1.189 -3.139 -5.571 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 4 -1.764 -1.733 -0.595 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 4 -0.040 -1.093 -4.802 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 5 -6.629 -4.075 -5.494 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 5 -8.121 -3.792 -6.557 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 5 -8.260 -2.945 -4.354 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 5 -7.827 -0.839 -6.548 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 5 -6.442 -0.274 -3.057 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 5 -8.190 0.873 -4.918 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 5 -9.549 -0.885 -3.671 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 5 -5.258 -1.198 -6.219 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 5 -2.136 2.145 -7.383 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 5 -2.394 3.324 -6.169 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 5 -3.296 -0.157 -7.762 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 6 -10.858 0.601 -4.678 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 6 -12.423 0.770 -5.656 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 6 -11.705 2.562 -4.170 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 6 -11.032 3.215 -7.094 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 6 -8.767 4.377 -4.269 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 6 -10.298 5.382 -6.367 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 6 -11.914 5.020 -4.420 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 6 -8.389 1.696 -6.734 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 6 -4.748 3.607 -9.381 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 6 -3.983 5.134 -9.358 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 6 -5.973 8.015 -6.142 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 7 -13.054 6.413 -5.923 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 7 -14.536 6.780 -6.973 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 7 -13.093 8.598 -6.269 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 7 -12.572 7.813 -9.185 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 7 -9.742 9.060 -6.958 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 7 -11.068 9.692 -9.330 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 7 -12.495 10.674 -7.447 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 7 -10.637 5.757 -8.308 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 7 -4.905 8.387 -11.020 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 7 -6.494 11.180 -9.324 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 7 -5.511 10.620 -10.557 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 8 -13.278 11.729 -9.389 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 8 -14.696 12.210 -10.481 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 8 -12.657 13.551 -10.440 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 8 -12.632 11.680 -12.892 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 8 -9.422 12.651 -11.062 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 8 -10.611 12.786 -13.595 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 8 -11.522 14.777 -12.285 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 8 -11.565 9.860 -11.352 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 8 -6.749 9.402 -13.265 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 8 -10.799 7.616 -12.042 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 9 -11.970 15.178 -14.554 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 9 -13.187 15.658 -15.867 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 9 -10.823 16.108 -16.196 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 9 -11.709 13.629 -17.770 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 9 -8.198 13.883 -16.294 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 9 -9.494 13.586 -18.751 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 9 -9.493 16.098 -18.267 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 9 -11.227 12.195 -15.655 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 9 -7.145 9.327 -17.129 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 9 -11.412 9.738 -15.482 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 10 -10.024 15.410 -20.620 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 10 -11.125 15.801 -22.058 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 10 -8.921 14.873 -22.461 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 10 -11.111 12.786 -22.823 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 10 -7.715 11.781 -21.443 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 10 -9.447 11.248 -23.562 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 10 -8.125 13.317 -24.227 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 10 -11.305 12.093 -20.345 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 10 -8.499 5.904 -19.362 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 10 -6.092 7.699 -21.407 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 10 -6.783 6.247 -20.945 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 11 -9.029 12.843 -26.491 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 11 -10.226 13.010 -27.897 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 11 -8.292 11.521 -28.063 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 11 -10.796 9.883 -27.527 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 11 -7.441 8.863 -26.037 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 11 -9.438 7.912 -27.722 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 11 -7.929 9.387 -29.162 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 11 -10.424 10.392 -24.532 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 11 -11.886 6.640 -21.758 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 11 -11.349 5.024 -21.630 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 11 -7.848 4.110 -24.713 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 12 -9.182 7.825 -30.567 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 12 -10.384 7.547 -31.951 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 12 -9.054 5.686 -31.195 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 12 -11.924 5.395 -30.390 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 12 -9.152 4.171 -28.068 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 12 -11.365 3.241 -29.496 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 12 -9.429 3.306 -31.148 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 12 -11.440 6.835 -28.286 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 12 -14.053 6.538 -24.366 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 12 -13.568 5.030 -23.718 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 12 -13.275 7.764 -26.531 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 13 -11.251 1.709 -32.040 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 13 -12.700 1.278 -33.111 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 13 -12.154 -0.367 -31.546 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 13 -14.800 0.898 -31.172 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 13 -12.808 -0.118 -28.102 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 13 -15.225 -0.602 -29.397 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 13 -13.503 -2.096 -30.494 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 13 -13.641 3.142 -29.681 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 13 -16.655 2.195 -23.586 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 13 -15.388 -1.082 -24.513 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 13 -16.521 -0.158 -23.698 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 14 -15.755 -3.009 -31.046 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 14 -17.043 -3.469 -32.297 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 14 -17.303 -4.295 -30.056 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 14 -19.253 -2.047 -30.657 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 14 -17.790 -2.482 -27.159 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 14 -20.241 -2.398 -28.545 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 14 -19.391 -4.762 -28.737 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 14 -17.426 -0.375 -29.969 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 14 -18.264 3.974 -28.338 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 14 -18.834 3.666 -26.753 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 14 -17.487 2.319 -30.194 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 15 -21.833 -4.829 -29.350 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 15 -23.172 -5.178 -30.582 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 15 -23.782 -4.841 -28.271 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 15 -24.356 -2.406 -30.046 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 15 -23.374 -1.939 -26.398 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 15 -25.455 -1.369 -28.206 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 15 -25.884 -3.723 -27.369 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 15 -22.063 -1.541 -29.675 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 15 -22.497 2.687 -26.676 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 15 -21.039 0.559 -30.474 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 16 -28.353 -3.155 -28.742 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 16 -29.458 -3.303 -30.221 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 16 -30.136 -1.931 -28.333 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 16 -29.033 -0.316 -30.704 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 16 -28.490 0.920 -27.149 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 16 -29.645 1.695 -29.604 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 16 -31.402 0.302 -28.419 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 16 -26.727 -0.195 -30.307 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 16 -24.010 5.214 -27.068 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 16 -27.129 4.561 -25.324 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 16 -25.959 5.652 -25.811 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 17 -32.638 1.454 -30.085 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 17 -33.694 1.522 -31.606 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 17 -33.502 3.468 -30.146 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 17 -31.521 3.535 -32.574 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 17 -30.647 5.201 -29.259 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 17 -30.956 5.808 -32.007 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 17 -33.295 5.954 -31.022 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 17 -29.825 2.592 -31.564 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 17 -26.054 5.652 -29.700 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 17 -27.487 2.031 -32.132 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 18 -34.023 7.092 -33.028 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 18 -34.499 7.287 -34.808 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 18 -33.852 9.158 -33.276 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 18 -31.365 7.876 -34.749 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 18 -31.054 9.395 -31.256 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 18 -29.963 9.695 -33.875 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 18 -32.107 11.088 -33.924 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 18 -30.541 6.665 -33.480 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 18 -26.805 4.526 -31.547 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 18 -26.428 5.561 -30.237 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 18 -28.693 4.696 -33.333 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 19 -32.085 12.908 -36.386 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 19 -30.337 13.015 -36.993 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 19 -31.277 14.816 -35.651 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 19 -29.532 12.710 -34.159 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 19 -32.334 14.512 -32.304 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 19 -29.515 14.160 -32.188 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 19 -29.851 16.080 -33.843 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 19 -30.406 11.324 -32.888 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 19 -32.168 9.093 -28.910 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 19 -33.328 9.558 -27.745 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 19 -34.969 13.939 -28.592 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 20 -27.646 16.521 -33.055 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 20 -25.848 16.164 -32.786 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 20 -27.053 17.256 -31.020 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 20 -26.207 14.478 -30.408 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 20 -29.556 15.717 -29.063 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 20 -27.058 14.780 -28.179 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 20 -26.749 17.268 -28.615 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 20 -28.138 13.429 -31.393 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 20 -31.188 11.546 -27.624 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 20 -28.780 11.047 -31.501 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 21 -26.315 15.967 -27.238 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 21 -24.873 15.764 -26.090 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 21 -26.880 15.063 -25.162 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 21 -24.743 13.069 -25.552 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 21 -28.358 11.946 -25.979 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 21 -26.139 11.472 -24.360 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 21 -27.271 13.552 -23.378 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 21 -25.598 12.573 -28.008 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 21 -24.638 8.443 -30.083 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 21 -25.631 7.356 -29.209 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 21 -24.331 11.019 -29.821 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 22 -26.318 12.328 -21.992 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 22 -25.110 12.151 -20.597 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 22 -26.629 10.386 -20.767 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 22 -23.740 9.860 -21.241 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 22 -26.289 7.834 -23.218 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 22 -24.258 7.485 -21.313 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 22 -26.343 8.117 -19.969 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 22 -23.954 10.361 -23.763 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 22 -21.006 8.572 -26.986 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 22 -21.477 6.927 -27.037 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 22 -21.939 10.542 -25.553 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 23 -25.319 7.075 -18.448 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 23 -24.212 6.856 -16.978 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 23 -25.008 4.863 -17.973 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 23 -22.087 5.376 -18.199 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 23 -23.870 3.630 -21.082 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 23 -21.841 3.197 -19.185 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 23 -24.022 2.629 -18.005 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 23 -22.386 6.720 -20.327 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 23 -19.055 7.271 -23.626 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 23 -19.035 5.737 -24.384 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 23 -20.510 8.148 -21.648 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 24 -22.838 1.411 -16.263 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 24 -21.609 1.231 -14.887 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 24 -21.920 -0.660 -16.302 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 24 -19.271 0.718 -16.601 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 24 -20.901 -0.844 -19.663 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 24 -18.577 -0.991 -18.084 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 24 -20.306 -2.442 -16.938 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 24 -20.009 2.560 -18.370 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 24 -17.377 4.001 -22.231 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 24 -16.909 3.209 -23.669 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 24 -18.418 -1.301 -23.725 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 25 -18.699 -3.512 -15.612 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 25 -17.481 -3.660 -14.222 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 25 -17.379 -5.243 -16.048 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 25 -15.215 -3.074 -16.215 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 25 -16.706 -4.546 -19.391 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 25 -14.250 -4.220 -18.058 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 25 -15.313 -6.304 -17.074 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 25 -16.225 -1.339 -17.426 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 25 -15.174 1.486 -21.276 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 25 -15.055 1.160 -22.948 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 25 -15.768 -3.451 -23.864 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 26 -13.223 -7.137 -15.865 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 26 -11.828 -6.985 -14.656 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 26 -11.523 -8.326 -16.648 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 26 -10.270 -5.503 -16.822 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 26 -11.609 -7.229 -19.948 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 26 -9.226 -6.115 -18.878 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 26 -9.306 -8.495 -18.029 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 26 -11.903 -4.440 -17.704 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 26 -12.125 -3.643 -22.839 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 26 -12.404 -2.158 -18.503 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 27 -7.018 -8.108 -17.512 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 27 -5.567 -7.744 -16.417 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 27 -5.112 -8.205 -18.717 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 27 -5.120 -5.189 -17.930 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 27 -6.040 -6.292 -21.461 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 27 -4.179 -4.660 -20.085 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 27 -3.189 -7.003 -20.022 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 27 -7.250 -4.823 -18.469 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 27 -9.711 -1.102 -20.006 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 27 -9.365 -1.102 -21.683 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 27 -8.900 -2.709 -18.124 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 28 -1.514 -5.954 -19.696 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 28 -0.027 -5.434 -18.720 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 28 -0.058 -5.030 -21.100 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 28 -0.834 -2.601 -19.298 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 28 -2.250 -2.929 -22.821 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 28 -0.683 -1.161 -21.280 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 28 0.983 -2.920 -22.140 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 28 -3.354 -2.848 -19.278 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 28 -6.562 1.456 -23.557 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 28 -3.722 0.214 -25.450 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 28 -4.820 1.440 -25.146 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 29 2.450 -1.163 -21.325 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 29 3.767 -0.492 -20.208 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 29 3.195 0.745 -22.199 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 29 1.944 1.868 -19.604 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 29 0.137 2.223 -22.944 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 29 1.210 3.800 -20.875 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 29 3.187 3.268 -22.409 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 29 -0.188 0.738 -19.509 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 29 -5.684 4.082 -21.905 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 29 -3.044 4.806 -24.293 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 29 -4.458 5.274 -23.531 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 30 4.103 5.194 -20.814 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 30 5.228 5.816 -19.478 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 30 3.944 7.431 -20.702 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 30 2.801 6.915 -17.908 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 30 0.508 7.772 -20.822 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 30 1.243 8.685 -18.285 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 30 2.991 9.589 -19.902 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 30 1.160 4.609 -19.083 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 30 -3.190 4.030 -16.928 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 30 -4.561 5.040 -16.807 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 30 -3.802 9.242 -18.900 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 31 3.247 10.950 -17.806 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 31 4.380 11.530 -16.459 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 31 2.322 12.747 -17.011 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 31 1.869 11.078 -14.503 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 31 -0.925 11.586 -17.039 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 31 -0.315 12.020 -14.353 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 31 0.681 13.974 -15.643 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 31 1.283 8.754 -16.038 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 31 -2.190 5.701 -14.448 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 31 -3.878 5.876 -14.251 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 31 -5.305 10.269 -15.379 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 32 0.753 14.798 -13.266 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 32 1.782 15.439 -11.864 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 32 -0.652 15.810 -11.983 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 32 -0.090 13.439 -10.110 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 32 -3.195 13.547 -12.338 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 32 -2.433 13.361 -9.636 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 32 -2.415 15.837 -10.207 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 32 -0.061 11.923 -11.956 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 32 -1.113 7.322 -12.036 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 32 -2.824 7.339 -12.015 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 32 0.586 9.299 -12.017 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 33 -2.302 15.865 -7.664 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 33 -1.412 16.328 -6.106 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 33 -3.807 15.788 -6.107 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 33 -2.195 13.380 -5.126 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 33 -5.368 12.910 -7.189 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 33 -4.286 12.266 -4.696 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 33 -5.227 14.628 -4.463 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 33 -1.883 12.692 -7.667 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 33 -4.594 8.256 -7.851 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 33 -0.732 10.662 -8.473 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 34 -4.963 13.739 -2.268 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 34 -4.304 14.003 -0.558 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 34 -6.215 12.526 -0.968 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 34 -3.604 10.897 -0.703 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 34 -6.390 9.761 -3.024 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 34 -4.920 8.893 -0.823 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 34 -6.801 10.347 0.117 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 34 -3.027 11.258 -3.466 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 34 -3.583 4.858 -5.884 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 34 -6.558 5.342 -3.853 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 34 -5.404 4.309 -4.485 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 35 -6.143 9.028 1.650 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 35 -5.766 9.029 3.463 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 35 -6.896 7.169 2.222 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 35 -3.803 6.782 2.387 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 35 -5.755 5.567 -0.657 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 35 -4.098 4.553 1.390 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 35 -6.440 4.659 2.448 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 35 -3.095 7.986 0.255 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 35 -1.660 3.702 -4.915 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 35 -4.694 2.370 -3.424 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 35 -3.268 2.105 -4.259 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 36 -6.103 3.743 2.832 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 36 -6.312 2.899 4.468 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 36 -6.758 1.798 2.287 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 36 -3.818 1.593 3.445 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 36 -4.390 1.401 -0.305 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 36 -3.358 -0.247 1.708 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 36 -5.899 -0.698 1.880 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 36 -2.503 3.130 2.368 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 36 0.825 1.655 -3.453 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 36 -2.333 -0.124 -3.714 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 36 -0.709 -0.017 -4.103 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 37 -6.871 -1.028 2.331 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 37 -7.807 -1.717 3.774 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 37 -8.237 -2.277 1.369 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 37 -5.650 -3.748 2.659 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 37 -6.011 -3.157 -1.082 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 37 -5.627 -5.353 0.644 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 37 -8.179 -5.105 0.670 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 37 -4.117 -2.756 1.872 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 37 -1.849 -3.493 -2.751 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 37 -1.655 -2.596 1.747 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 38 -6.187 -6.936 2.413 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 38 -6.661 -8.074 3.798 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 38 -4.780 -8.836 3.183 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 38 -5.530 -6.810 5.561 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 38 -1.888 -7.508 4.791 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 38 -3.625 -7.731 6.994 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 38 -4.083 -9.933 5.703 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 38 -4.428 -5.123 4.932 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 38 -2.156 -1.416 6.766 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 38 -0.636 -2.087 7.180 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 38 -4.241 -2.529 5.671 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 39 -8.179 -11.097 6.372 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 39 -9.417 -10.295 7.492 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 39 -9.023 -12.682 7.664 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 39 -7.505 -10.893 9.724 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 39 -5.994 -14.185 8.613 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 39 -6.839 -12.856 10.938 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 39 -8.944 -13.932 9.971 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 39 -5.235 -10.670 7.925 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 39 -0.427 -13.924 11.588 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 39 -3.331 -16.104 11.728 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 39 -1.927 -15.535 12.438 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 40 -9.058 -13.424 12.080 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 40 -10.390 -12.866 13.243 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 40 -8.722 -14.598 13.833 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 40 -7.723 -11.837 14.863 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 40 -5.321 -14.544 13.636 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 40 -5.880 -13.026 15.920 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 40 -7.522 -14.997 15.988 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 40 -6.666 -11.455 12.636 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 40 -2.895 -8.724 11.863 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 40 -1.617 -9.684 12.477 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 40 -5.455 -9.208 11.751 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 41 -7.393 -14.031 18.032 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 41 -8.400 -13.492 19.491 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 41 -6.162 -14.383 19.825 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 41 -6.097 -11.314 19.991 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 41 -3.165 -13.306 18.583 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 41 -3.764 -11.515 20.619 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 41 -4.471 -13.825 21.482 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 41 -5.779 -11.426 17.223 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 41 -1.047 -9.272 17.062 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 41 -5.465 -9.415 15.821 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 42 -4.278 -12.213 23.369 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 42 -5.054 -11.467 24.878 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 42 -2.661 -11.415 24.707 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 42 -3.824 -8.656 24.153 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 42 -0.690 -9.861 22.370 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 42 -1.576 -7.837 24.027 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 42 -1.039 -9.829 25.536 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 42 -4.214 -9.463 21.295 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 42 -3.636 -5.794 18.117 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 42 -2.292 -4.823 17.707 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 42 1.508 -5.932 20.343 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 43 -1.096 -7.865 26.819 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 43 -1.729 -6.972 28.314 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 43 0.362 -6.256 27.373 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 43 -1.870 -4.301 26.674 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 43 0.999 -4.963 24.255 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 43 -0.195 -2.895 25.676 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 43 1.396 -4.057 27.303 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 43 -2.336 -6.011 24.500 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 43 -1.281 -2.527 20.784 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 43 -4.070 -5.568 22.798 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 44 0.770 -1.796 28.061 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 44 0.125 -0.685 29.396 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 44 1.380 0.373 27.691 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 44 -1.624 0.913 27.441 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 44 0.594 0.721 24.362 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 44 -1.138 2.444 25.689 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 44 1.127 2.686 26.818 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 44 -1.797 -1.681 25.786 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 44 -4.115 1.319 20.062 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 44 -1.282 3.350 21.093 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 44 -2.763 3.238 20.322 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 45 -0.775 4.457 27.077 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 45 -1.505 5.612 28.329 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 45 -1.712 6.185 26.003 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 45 -4.365 5.201 27.099 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 45 -3.328 4.490 23.494 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 45 -5.332 5.740 24.976 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 45 -3.423 7.416 24.797 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 45 -3.449 2.710 26.506 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 45 -6.535 -0.788 25.787 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 45 -7.240 -0.350 24.289 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 45 -4.688 0.406 27.186 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 46 -5.445 8.656 25.316 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 46 -6.494 9.693 26.440 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 46 -7.157 9.350 24.122 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 46 -8.973 7.834 25.917 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 46 -7.900 6.354 22.546 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 46 -10.187 7.177 23.936 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 46 -9.182 9.288 22.916 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 46 -7.148 5.805 25.907 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 46 -8.521 1.376 26.782 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 46 -9.410 0.984 25.373 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 46 -7.281 3.574 27.428 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 47 -11.631 8.508 23.649 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 47 -13.143 9.076 24.558 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 47 -13.499 7.137 23.343 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 47 -13.791 7.220 26.264 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 47 -12.507 3.974 24.723 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 47 -14.722 4.974 26.176 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 47 -15.318 5.365 23.775 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 47 -11.769 6.624 26.984 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 47 -11.196 1.689 28.526 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 47 -10.727 6.210 29.184 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 48 -18.691 6.540 22.499 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 48 -17.839 4.895 22.474 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 48 -18.997 5.698 20.489 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 48 -16.206 5.472 19.930 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 48 -18.054 8.524 18.602 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 48 -16.533 6.285 17.817 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 48 -18.876 5.559 17.999 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 48 -15.669 7.598 21.140 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 48 -14.205 11.171 17.655 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 48 -13.501 8.731 21.480 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 49 -16.783 5.007 16.560 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 49 -15.777 3.545 16.030 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 49 -14.994 5.574 15.191 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 49 -13.215 3.875 16.301 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 49 -12.763 7.481 17.325 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 49 -11.496 5.419 15.968 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 49 -13.030 6.545 14.323 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 49 -14.003 4.533 19.190 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 49 -7.727 6.488 21.170 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 49 -8.300 8.243 18.041 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 49 -7.229 7.546 19.121 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 50 -11.684 5.852 13.093 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 50 -10.858 4.688 11.910 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 50 -9.683 6.685 12.587 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 50 -8.406 4.264 13.694 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 50 -8.550 7.406 15.824 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 50 -6.731 5.690 14.660 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 50 -7.441 7.337 12.836 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 50 -10.407 4.230 16.018 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 50 -8.422 2.398 20.094 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 50 -7.122 2.913 21.075 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 50 -5.055 6.810 19.304 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 51 -5.360 6.345 12.586 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 51 -4.187 5.467 11.451 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 51 -3.225 6.654 13.279 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 51 -2.983 3.689 13.635 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 51 -3.546 5.954 16.653 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 51 -1.730 4.110 15.618 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 51 -1.190 6.342 14.532 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 51 -5.575 3.861 14.744 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 51 -6.929 0.379 17.628 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 51 -5.914 0.615 18.986 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 51 -7.082 1.713 15.394 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 52 0.763 4.936 14.211 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 52 1.969 4.111 13.070 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 52 2.593 4.396 15.377 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 52 1.930 1.505 14.800 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 52 1.090 3.034 18.175 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 52 2.562 0.983 17.030 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 52 3.989 3.083 16.872 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 52 -1.026 2.179 15.269 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 52 -3.517 -1.564 17.190 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 52 -3.379 -2.403 18.671 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 52 0.254 -0.756 21.258 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 53 5.434 1.116 16.538 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 53 6.699 0.288 15.468 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 53 6.553 -0.331 17.800 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 53 5.255 -2.481 16.062 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 53 3.915 -1.672 19.531 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 53 4.941 -3.778 18.035 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 53 6.940 -2.483 18.928 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 53 3.037 -0.935 16.185 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 53 -0.104 -4.185 18.760 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 53 0.875 -1.523 15.148 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 54 7.754 -4.765 18.180 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 54 8.860 -5.783 17.095 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 54 7.799 -6.829 19.000 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 54 6.460 -7.705 16.436 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 54 4.418 -7.230 19.605 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 54 5.088 -9.170 17.767 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 54 7.034 -9.050 19.431 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 54 4.720 -5.173 16.567 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 54 0.293 -5.944 14.641 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 54 -0.987 -6.990 15.072 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 54 0.179 -9.702 18.799 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 55 7.048 -11.223 18.157 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 55 7.932 -12.414 17.048 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 55 6.022 -13.242 18.206 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 55 5.461 -12.856 15.255 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 55 2.729 -12.286 17.842 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 55 3.296 -13.861 15.653 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 55 4.475 -14.961 17.651 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 55 4.719 -9.908 15.889 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 55 -1.714 -10.493 13.564 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 55 -1.256 -13.359 15.751 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 55 -2.003 -12.674 14.419 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 56 4.156 -16.456 15.824 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 56 4.912 -17.731 14.712 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 56 2.534 -17.794 15.044 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 56 3.224 -16.708 12.294 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 56 0.182 -15.427 14.210 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 56 0.853 -16.695 11.827 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 56 0.753 -18.534 13.606 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 56 3.388 -14.244 13.559 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 56 2.813 -10.372 10.923 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 56 1.154 -10.457 10.508 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 56 4.268 -11.984 12.365 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 57 0.480 -19.279 11.489 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 57 0.926 -20.497 10.164 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 57 -1.209 -19.518 9.955 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 57 0.789 -18.495 7.900 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 57 -1.970 -16.231 9.238 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 57 -1.032 -17.318 6.854 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 57 -2.495 -19.118 7.925 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 57 1.626 -16.297 9.906 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 57 2.892 -12.125 7.690 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 57 2.023 -11.033 6.705 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 57 -2.424 -12.539 5.959 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 58 -2.173 -19.471 5.727 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 58 -1.885 -20.812 4.480 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 58 -3.218 -18.881 3.869 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 58 -0.369 -18.620 2.739 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 58 -2.354 -15.563 3.837 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 58 -1.086 -16.638 1.604 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 58 -3.401 -17.707 1.695 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 58 0.544 -17.455 5.194 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 58 3.883 -13.892 4.933 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 58 3.835 -12.311 4.289 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 58 -0.375 -11.392 2.278 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 59 -2.370 -18.110 -0.474 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 59 -2.135 -19.390 -1.792 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 59 -2.253 -17.046 -2.407 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 59 0.673 -18.108 -2.165 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 59 -0.177 -14.469 -1.420 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 59 1.452 -16.033 -3.108 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 59 -0.827 -15.940 -4.255 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 59 0.917 -17.485 0.445 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 59 5.088 -12.055 0.944 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 59 2.800 -11.220 -1.752 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 59 4.312 -11.065 -1.052 1.00 0.00 H Missing atom added: ATOM 23 H5'1 RA3 A 60 0.063 -16.507 -6.023 1.00 0.00 H Missing atom added: ATOM 24 H5'2 RA3 A 60 0.635 -17.639 -7.374 1.00 0.00 H Missing atom added: ATOM 25 H4' RA3 A 60 1.084 -15.307 -7.637 1.00 0.00 H Missing atom added: ATOM 26 H3' RA3 A 60 3.563 -16.916 -6.747 1.00 0.00 H Missing atom added: ATOM 29 H1' RA3 A 60 3.092 -13.283 -5.701 1.00 0.00 H Missing atom added: ATOM 27 H2' RA3 A 60 4.881 -14.937 -7.080 1.00 0.00 H Missing atom added: ATOM 28 HO'2 RA3 A 60 3.085 -14.286 -8.769 1.00 0.00 H Missing atom added: ATOM 30 H8 RA3 A 60 3.005 -16.631 -4.071 1.00 0.00 H Missing atom added: ATOM 31 H61 RA3 A 60 6.530 -15.825 -0.777 1.00 0.00 H Missing atom added: ATOM 32 H62 RA3 A 60 7.580 -14.504 -0.512 1.00 0.00 H Missing atom added: ATOM 33 H2 RA3 A 60 6.924 -11.093 -3.758 1.00 0.00 H Missing atom added: ATOM 34 H3T RA3 A 60 2.788 -15.675 -9.142 1.00 0.00 H Missing atom added: ATOM 3 OP3 U A 1 13.318 -4.489 4.281 1.00 63.04 O Number of atoms: 1916 Number of residues: 60 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2063 Number of angles built: 3692 Number of dihedrals built: 5617 Number of impropers built: 402 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 1828815 Number of van der Waals pairs: 212383 Number of H-bonds built: 24 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 3 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 1277977430.2539 kcal/mol (1256179687.5660 without restraints) Performing minimization step: 2. Total energy = 1107096439.7927 kcal/mol (1088470168.5990 without restraints) Performing minimization step: 3. Total energy = 960943917.0750 kcal/mol (944997716.3335 without restraints) Performing minimization step: 4. Total energy = 835708652.1109 kcal/mol (822031791.1144 without restraints) Performing minimization step: 5. Total energy = 728201816.3890 kcal/mol (716450262.5163 without restraints) Performing minimization step: 6. Total energy = 635749722.3692 kcal/mol (625634712.1847 without restraints) Performing minimization step: 7. Total energy = 556106004.1207 kcal/mol (547384672.8667 without restraints) Performing minimization step: 8. Total energy = 487379534.6171 kcal/mol (479847215.7151 without restraints) Performing minimization step: 9. Total energy = 427975125.2688 kcal/mol (421459007.9885 without restraints) Performing minimization step: 10. Total energy = 376544632.6617 kcal/mol (370898526.9450 without restraints) Performing minimization step: 11. Total energy = 331946558.4865 kcal/mol (327046564.3812 without restraints) Performing minimization step: 12. Total energy = 293212596.4340 kcal/mol (288953514.3077 without restraints) Performing minimization step: 13. Total energy = 259519873.9790 kcal/mol (255812222.6902 without restraints) Performing minimization step: 14. Total energy = 230167872.8181 kcal/mol (226935407.9138 without restraints) Performing minimization step: 15. Total energy = 204559201.2829 kcal/mol (201736845.3188 without restraints) Performing minimization step: 16. Total energy = 182183544.7516 kcal/mol (179715657.9915 without restraints) Performing minimization step: 17. Total energy = 162604243.4008 kcal/mol (160443176.2120 without restraints) Performing minimization step: 18. Total energy = 145447046.4387 kcal/mol (143551925.2844 without restraints) Performing minimization step: 19. Total energy = 130390672.9169 kcal/mol (128726380.4422 without restraints) Performing minimization step: 20. Total energy = 117158875.0301 kcal/mol (115695191.7338 without restraints) Performing minimization step: 21. Total energy = 105513753.4208 kcal/mol (104224634.1080 without restraints) Performing minimization step: 22. Total energy = 95250117.7720 kcal/mol (94113080.6448 without restraints) Performing minimization step: 23. Total energy = 86190721.7625 kcal/mol (85186331.8228 without restraints) Performing minimization step: 24. Total energy = 78182230.7875 kcal/mol (77293662.3545 without restraints) Performing minimization step: 25. Total energy = 71091804.9139 kcal/mol (70304470.6301 without restraints) Performing minimization step: 26. Total energy = 64804199.3222 kcal/mol (64105435.1333 without restraints) Performing minimization step: 27. Total energy = 59219300.7531 kcal/mol (58598098.0905 without restraints) Performing minimization step: 28. Total energy = 54250031.8783 kcal/mol (53696809.7015 without restraints) Performing minimization step: 29. Total energy = 49820566.5444 kcal/mol (49326977.0823 without restraints) Performing minimization step: 30. Total energy = 45864807.9306 kcal/mol (45423570.9349 without restraints) Performing minimization step: 31. Total energy = 42325089.1605 kcal/mol (41929850.2833 without restraints) Performing minimization step: 32. Total energy = 39151062.1088 kcal/mol (38796271.6859 without restraints) Performing minimization step: 33. Total energy = 36298745.2898 kcal/mol (35979554.3620 without restraints) Performing minimization step: 34. Total energy = 33729706.0432 kcal/mol (33441876.9174 without restraints) Performing minimization step: 35. Total energy = 31410355.8974 kcal/mol (31150184.9505 without restraints) Performing minimization step: 36. Total energy = 29311341.1739 kcal/mol (29075591.9515 without restraints) Performing minimization step: 37. Total energy = 27407013.6919 kcal/mol (27192858.6647 without restraints) Performing minimization step: 38. Total energy = 25674968.9279 kcal/mol (25479938.5499 without restraints) Performing minimization step: 39. Total energy = 24095641.2200 kcal/mol (23917579.1786 without restraints) Performing minimization step: 40. Total energy = 22651947.5765 kcal/mol (22488971.3435 without restraints) Performing minimization step: 41. Total energy = 21328973.3512 kcal/mol (21179439.3296 without restraints) Performing minimization step: 42. Total energy = 20113694.4555 kcal/mol (19976167.1648 without restraints) Performing minimization step: 43. Total energy = 18994731.8849 kcal/mol (18867956.7425 without restraints) Performing minimization step: 44. Total energy = 17962135.1570 kcal/mol (17845014.4934 without restraints) Performing minimization step: 45. Total energy = 17007191.8207 kcal/mol (16898763.8205 without restraints) Performing minimization step: 46. Total energy = 16122260.5602 kcal/mol (16021680.8523 without restraints) Performing minimization step: 47. Total energy = 15300625.6344 kcal/mol (15207151.2753 without restraints) Performing minimization step: 48. Total energy = 14536370.5237 kcal/mol (14449346.1290 without restraints) Performing minimization step: 49. Total energy = 13824268.7554 kcal/mol (13743114.5445 without restraints) Performing minimization step: 50. Total energy = 13159689.9625 kcal/mol (13083891.4930 without restraints) Performing minimization step: 51. Total energy = 12538519.3336 kcal/mol (12467618.7143 without restraints) Performing minimization step: 52. Total energy = 11957088.7358 kcal/mol (11890677.1221 without restraints) Performing minimization step: 53. Total energy = 11412117.9280 kcal/mol (11349829.1223 without restraints) Performing minimization step: 54. Total energy = 10900664.4368 kcal/mol (10842169.4336 without restraints) Performing minimization step: 55. Total energy = 10420080.8252 kcal/mol (10365083.1607 without restraints) Performing minimization step: 56. Total energy = 9967978.2389 kcal/mol (9916210.0211 without restraints) Performing minimization step: 57. Total energy = 9542195.2642 kcal/mol (9493413.7791 without restraints) Performing minimization step: 58. Total energy = 9140771.2687 kcal/mol (9094756.0712 without restraints) Performing minimization step: 59. Total energy = 8761923.5199 kcal/mol (8718473.9331 without restraints) Performing minimization step: 60. Total energy = 8404027.4841 kcal/mol (8362960.4431 without restraints) Performing minimization step: 61. Total energy = 8065599.8055 kcal/mol (8026747.9901 without restraints) Performing minimization step: 62. Total energy = 7745283.5442 kcal/mol (7708493.7567 without restraints) Performing minimization step: 63. Total energy = 7441835.3214 kcal/mol (7406967.0711 without restraints) Performing minimization step: 64. Total energy = 7154114.0794 kcal/mol (7121038.3417 without restraints) Performing minimization step: 65. Total energy = 6881071.2110 kcal/mol (6849669.3355 without restraints) Performing minimization step: 66. Total energy = 6621741.8544 kcal/mol (6591904.5998 without restraints) Performing minimization step: 67. Total energy = 6375237.1837 kcal/mol (6346863.8614 without restraints) Performing minimization step: 68. Total energy = 6140737.5527 kcal/mol (6113735.2632 without restraints) Performing minimization step: 69. Total energy = 5917486.3732 kcal/mol (5891769.3232 without restraints) Performing minimization step: 70. Total energy = 5704784.6296 kcal/mol (5680273.5191 without restraints) Performing minimization step: 71. Total energy = 5501985.9438 kcal/mol (5478607.4131 without restraints) Performing minimization step: 72. Total energy = 5308492.1235 kcal/mol (5286178.2542 without restraints) Performing minimization step: 73. Total energy = 5123749.1331 kcal/mol (5102436.9958 without restraints) Performing minimization step: 74. Total energy = 4947243.4387 kcal/mol (4926874.6815 without restraints) Performing minimization step: 75. Total energy = 4778498.6831 kcal/mol (4759019.1577 without restraints) Performing minimization step: 76. Total energy = 4617072.6568 kcal/mol (4598432.0769 without restraints) Performing minimization step: 77. Total energy = 4462554.5333 kcal/mol (4444706.1631 without restraints) Performing minimization step: 78. Total energy = 4314562.3425 kcal/mol (4297462.7114 without restraints) Performing minimization step: 79. Total energy = 4172740.6586 kcal/mol (4156349.3005 without restraints) Performing minimization step: 80. Total energy = 4036758.4839 kcal/mol (4021037.6979 without restraints) Performing minimization step: 81. Total energy = 3906307.3091 kcal/mol (3891221.9405 without restraints) Performing minimization step: 82. Total energy = 3781099.3364 kcal/mol (3766616.5760 without restraints) Performing minimization step: 83. Total energy = 3660865.8495 kcal/mol (3646955.0495 without restraints) Performing minimization step: 84. Total energy = 3545355.7207 kcal/mol (3531988.2258 without restraints) Performing minimization step: 85. Total energy = 3434334.0401 kcal/mol (3421483.0329 without restraints) Performing minimization step: 86. Total energy = 3327580.8608 kcal/mol (3315221.2200 without restraints) Performing minimization step: 87. Total energy = 3224890.0473 kcal/mol (3212998.2176 without restraints) Performing minimization step: 88. Total energy = 3126068.2219 kcal/mol (3114622.0946 without restraints) Performing minimization step: 89. Total energy = 3030933.7960 kcal/mol (3019912.6003 without restraints) Performing minimization step: 90. Total energy = 2939316.0857 kcal/mol (2928700.2881 without restraints) Performing minimization step: 91. Total energy = 2851054.4994 kcal/mol (2840825.7127 without restraints) Performing minimization step: 92. Total energy = 2765997.7947 kcal/mol (2756138.6933 without restraints) Performing minimization step: 93. Total energy = 2684003.3964 kcal/mol (2674497.6399 without restraints) Performing minimization step: 94. Total energy = 2604936.7725 kcal/mol (2595768.9348 without restraints) Performing minimization step: 95. Total energy = 2528670.8615 kcal/mol (2519826.3663 without restraints) Performing minimization step: 96. Total energy = 2455085.5479 kcal/mol (2446550.6094 without restraints) Performing minimization step: 97. Total energy = 2384067.1807 kcal/mol (2375828.7494 without restraints) Performing minimization step: 98. Total energy = 2315508.1323 kcal/mol (2307553.8447 without restraints) Performing minimization step: 99. Total energy = 2249306.3923 kcal/mol (2241624.5253 without restraints) Performing minimization step: 100. Total energy = 2185365.1956 kcal/mol (2177944.6245 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 2123592.6801 kcal/mol (2116422.8394 without restraints) Performing minimization step: 102. Total energy = 2063901.5710 kcal/mol (2056972.4193 without restraints) Performing minimization step: 103. Total energy = 2006208.8914 kcal/mol (1999510.8783 without restraints) Performing minimization step: 104. Total energy = 1950435.6949 kcal/mol (1943959.7305 without restraints) Performing minimization step: 105. Total energy = 1896506.8181 kcal/mol (1890244.2454 without restraints) Performing minimization step: 106. Total energy = 1844350.6542 kcal/mol (1838293.2231 without restraints) Performing minimization step: 107. Total energy = 1793898.9410 kcal/mol (1788038.7843 without restraints) Performing minimization step: 108. Total energy = 1745086.5666 kcal/mol (1739416.1780 without restraints) Performing minimization step: 109. Total energy = 1697851.3888 kcal/mol (1692363.6023 without restraints) Performing minimization step: 110. Total energy = 1652134.0670 kcal/mol (1646822.0379 without restraints) Performing minimization step: 111. Total energy = 1607877.9068 kcal/mol (1602735.0939 without restraints) Performing minimization step: 112. Total energy = 1565028.7153 kcal/mol (1560048.8646 without restraints) Performing minimization step: 113. Total energy = 1523534.6663 kcal/mol (1518711.7953 without restraints) Performing minimization step: 114. Total energy = 1483346.1738 kcal/mol (1478674.5576 without restraints) Performing minimization step: 115. Total energy = 1444415.7754 kcal/mol (1439889.9329 without restraints) Performing minimization step: 116. Total energy = 1406698.0226 kcal/mol (1402312.7043 without restraints) Performing minimization step: 117. Total energy = 1370149.3778 kcal/mol (1365899.5539 without restraints) Performing minimization step: 118. Total energy = 1334728.1185 kcal/mol (1330608.9681 without restraints) Performing minimization step: 119. Total energy = 1300394.2471 kcal/mol (1296401.1477 without restraints) Performing minimization step: 120. Total energy = 1267109.4064 kcal/mol (1263237.9242 without restraints) Performing minimization step: 121. Total energy = 1234836.7998 kcal/mol (1231082.6809 without restraints) Performing minimization step: 122. Total energy = 1203541.1169 kcal/mol (1199900.2784 without restraints) Performing minimization step: 123. Total energy = 1173188.4626 kcal/mol (1169656.9849 without restraints) Performing minimization step: 124. Total energy = 1143746.2914 kcal/mol (1140320.4101 without restraints) Performing minimization step: 125. Total energy = 1115183.3442 kcal/mol (1111859.4434 without restraints) Performing minimization step: 126. Total energy = 1087469.5892 kcal/mol (1084244.1944 without restraints) Performing minimization step: 127. Total energy = 1060576.1668 kcal/mol (1057445.9388 without restraints) Performing minimization step: 128. Total energy = 1034475.3356 kcal/mol (1031437.0640 without restraints) Performing minimization step: 129. Total energy = 1009140.4237 kcal/mol (1006191.0216 without restraints) Performing minimization step: 130. Total energy = 984545.7799 kcal/mol (981682.2782 without restraints) Performing minimization step: 131. Total energy = 960666.7301 kcal/mol (957886.2722 without restraints) Performing minimization step: 132. Total energy = 937479.5337 kcal/mol (934779.3712 without restraints) Performing minimization step: 133. Total energy = 914961.3440 kcal/mol (912338.8314 without restraints) Performing minimization step: 134. Total energy = 893090.1694 kcal/mol (890542.7601 without restraints) Performing minimization step: 135. Total energy = 871844.8370 kcal/mol (869370.0787 without restraints) Performing minimization step: 136. Total energy = 851204.9579 kcal/mol (848800.4891 without restraints) Performing minimization step: 137. Total energy = 831150.8942 kcal/mol (828814.4402 without restraints) Performing minimization step: 138. Total energy = 811663.7280 kcal/mol (809393.0970 without restraints) Performing minimization step: 139. Total energy = 792725.2307 kcal/mol (790518.3108 without restraints) Performing minimization step: 140. Total energy = 774317.8354 kcal/mol (772172.5910 without restraints) Performing minimization step: 141. Total energy = 756424.6091 kcal/mol (754339.0781 without restraints) Performing minimization step: 142. Total energy = 739029.2273 kcal/mol (737001.5176 without restraints) Performing minimization step: 143. Total energy = 722115.9489 kcal/mol (720144.2362 without restraints) Performing minimization step: 144. Total energy = 705669.5930 kcal/mol (703752.1177 without restraints) Performing minimization step: 145. Total energy = 689675.5164 kcal/mol (687810.5808 without restraints) Performing minimization step: 146. Total energy = 674119.5917 kcal/mol (672305.5581 without restraints) Performing minimization step: 147. Total energy = 658988.1874 kcal/mol (657223.4754 without restraints) Performing minimization step: 148. Total energy = 644268.1480 kcal/mol (642551.2320 without restraints) Performing minimization step: 149. Total energy = 629946.7753 kcal/mol (628276.1828 without restraints) Performing minimization step: 150. Total energy = 616011.8104 kcal/mol (614386.1197 without restraints) Performing minimization step: 151. Total energy = 602451.4171 kcal/mol (600869.2555 without restraints) Performing minimization step: 152. Total energy = 589254.1644 kcal/mol (587714.2060 without restraints) Performing minimization step: 153. Total energy = 576409.0121 kcal/mol (574909.9762 without restraints) Performing minimization step: 154. Total energy = 563905.2958 kcal/mol (562445.9452 without restraints) Performing minimization step: 155. Total energy = 551732.7112 kcal/mol (550311.8505 without restraints) Performing minimization step: 156. Total energy = 539881.3015 kcal/mol (538497.7754 without restraints) Performing minimization step: 157. Total energy = 528341.4444 kcal/mol (526994.1364 without restraints) Performing minimization step: 158. Total energy = 517103.8386 kcal/mol (515791.6693 without restraints) Performing minimization step: 159. Total energy = 506159.4925 kcal/mol (504881.4183 without restraints) Performing minimization step: 160. Total energy = 495499.7121 kcal/mol (494254.7241 without restraints) Performing minimization step: 161. Total energy = 485116.0907 kcal/mol (483903.2131 without restraints) Performing minimization step: 162. Total energy = 475000.4978 kcal/mol (473818.7868 without restraints) Performing minimization step: 163. Total energy = 465145.0679 kcal/mol (463993.6105 without restraints) Performing minimization step: 164. Total energy = 455542.1930 kcal/mol (454420.1059 without restraints) Performing minimization step: 165. Total energy = 446184.5117 kcal/mol (445090.9403 without restraints) Performing minimization step: 166. Total energy = 437064.9002 kcal/mol (435999.0173 without restraints) Performing minimization step: 167. Total energy = 428176.4645 kcal/mol (427137.4695 without restraints) Performing minimization step: 168. Total energy = 419512.5314 kcal/mol (418499.6496 without restraints) Performing minimization step: 169. Total energy = 411066.6413 kcal/mol (410079.1223 without restraints) Performing minimization step: 170. Total energy = 402832.5397 kcal/mol (401869.6573 without restraints) Performing minimization step: 171. Total energy = 394804.1709 kcal/mol (393865.2215 without restraints) Performing minimization step: 172. Total energy = 386975.6701 kcal/mol (386059.9726 without restraints) Performing minimization step: 173. Total energy = 379341.3572 kcal/mol (378448.2520 without restraints) Performing minimization step: 174. Total energy = 371895.7305 kcal/mol (371024.5782 without restraints) Performing minimization step: 175. Total energy = 364633.4598 kcal/mol (363783.6411 without restraints) Performing minimization step: 176. Total energy = 357549.3811 kcal/mol (356720.2964 without restraints) Performing minimization step: 177. Total energy = 350638.4909 kcal/mol (349829.5587 without restraints) Performing minimization step: 178. Total energy = 343895.9403 kcal/mol (343106.5970 without restraints) Performing minimization step: 179. Total energy = 337317.0293 kcal/mol (336546.7290 without restraints) Performing minimization step: 180. Total energy = 330897.2030 kcal/mol (330145.4163 without restraints) Performing minimization step: 181. Total energy = 324632.0459 kcal/mol (323898.2597 without restraints) Performing minimization step: 182. Total energy = 318517.2771 kcal/mol (317800.9938 without restraints) Performing minimization step: 183. Total energy = 312548.7461 kcal/mol (311849.4834 without restraints) Performing minimization step: 184. Total energy = 306722.4283 kcal/mol (306039.7184 without restraints) Performing minimization step: 185. Total energy = 301034.4210 kcal/mol (300367.8103 without restraints) Performing minimization step: 186. Total energy = 295480.9391 kcal/mol (294829.9876 without restraints) Performing minimization step: 187. Total energy = 290058.3115 kcal/mol (289422.5923 without restraints) Performing minimization step: 188. Total energy = 284762.9769 kcal/mol (284142.0762 without restraints) Performing minimization step: 189. Total energy = 279591.4810 kcal/mol (278984.9971 without restraints) Performing minimization step: 190. Total energy = 274540.4724 kcal/mol (273948.0157 without restraints) Performing minimization step: 191. Total energy = 269606.6990 kcal/mol (269027.8915 without restraints) Performing minimization step: 192. Total energy = 264787.0058 kcal/mol (264221.4806 without restraints) Performing minimization step: 193. Total energy = 260078.3311 kcal/mol (259525.7322 without restraints) Performing minimization step: 194. Total energy = 255477.7035 kcal/mol (254937.6854 without restraints) Performing minimization step: 195. Total energy = 250982.2389 kcal/mol (250454.4662 without restraints) Performing minimization step: 196. Total energy = 246589.1389 kcal/mol (246073.2862 without restraints) Performing minimization step: 197. Total energy = 242295.6863 kcal/mol (241791.4376 without restraints) Performing minimization step: 198. Total energy = 238099.2437 kcal/mol (237606.2922 without restraints) Performing minimization step: 199. Total energy = 233997.2506 kcal/mol (233515.2987 without restraints) Performing minimization step: 200. Total energy = 229987.2214 kcal/mol (229515.9799 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 226066.7424 kcal/mol (225605.9306 without restraints) Performing minimization step: 202. Total energy = 222233.4703 kcal/mol (221782.8156 without restraints) Performing minimization step: 203. Total energy = 218485.1293 kcal/mol (218044.3671 without restraints) Performing minimization step: 204. Total energy = 214819.5096 kcal/mol (214388.3828 without restraints) Performing minimization step: 205. Total energy = 211234.4649 kcal/mol (210812.7238 without restraints) Performing minimization step: 206. Total energy = 207727.9112 kcal/mol (207315.3134 without restraints) Performing minimization step: 207. Total energy = 204297.8237 kcal/mol (203894.1337 without restraints) Performing minimization step: 208. Total energy = 200942.2362 kcal/mol (200547.2252 without restraints) Performing minimization step: 209. Total energy = 197659.2383 kcal/mol (197272.6841 without restraints) Performing minimization step: 210. Total energy = 194446.9745 kcal/mol (194068.6613 without restraints) Performing minimization step: 211. Total energy = 191303.6422 kcal/mol (190933.3602 without restraints) Performing minimization step: 212. Total energy = 188227.4899 kcal/mol (187865.0353 without restraints) Performing minimization step: 213. Total energy = 185216.8163 kcal/mol (184861.9911 without restraints) Performing minimization step: 214. Total energy = 182269.9674 kcal/mol (181922.5793 without restraints) Performing minimization step: 215. Total energy = 179385.3371 kcal/mol (179045.1991 without restraints) Performing minimization step: 216. Total energy = 176561.3640 kcal/mol (176228.2945 without restraints) Performing minimization step: 217. Total energy = 173796.5310 kcal/mol (173470.3534 without restraints) Performing minimization step: 218. Total energy = 171089.3637 kcal/mol (170769.9065 without restraints) Performing minimization step: 219. Total energy = 168438.4291 kcal/mol (168125.5255 without restraints) Performing minimization step: 220. Total energy = 165842.3342 kcal/mol (165535.8222 without restraints) Performing minimization step: 221. Total energy = 163299.7255 kcal/mol (162999.4475 without restraints) Performing minimization step: 222. Total energy = 160809.2868 kcal/mol (160515.0896 without restraints) Performing minimization step: 223. Total energy = 158369.7388 kcal/mol (158081.4734 without restraints) Performing minimization step: 224. Total energy = 155979.8377 kcal/mol (155697.3596 without restraints) Performing minimization step: 225. Total energy = 153638.3746 kcal/mol (153361.5429 without restraints) Performing minimization step: 226. Total energy = 151344.1738 kcal/mol (151072.8518 without restraints) Performing minimization step: 227. Total energy = 149096.0924 kcal/mol (148830.1469 without restraints) Performing minimization step: 228. Total energy = 146893.0187 kcal/mol (146632.3204 without restraints) Performing minimization step: 229. Total energy = 144733.8720 kcal/mol (144478.2951 without restraints) Performing minimization step: 230. Total energy = 142617.6014 kcal/mol (142367.0235 without restraints) Performing minimization step: 231. Total energy = 140543.1842 kcal/mol (140297.4864 without restraints) Performing minimization step: 232. Total energy = 138509.6265 kcal/mol (138268.6929 without restraints) Performing minimization step: 233. Total energy = 136515.9611 kcal/mol (136279.6792 without restraints) Performing minimization step: 234. Total energy = 134561.2475 kcal/mol (134329.5078 without restraints) Performing minimization step: 235. Total energy = 132644.5704 kcal/mol (132417.2663 without restraints) Performing minimization step: 236. Total energy = 130765.0398 kcal/mol (130542.0677 without restraints) Performing minimization step: 237. Total energy = 128921.7896 kcal/mol (128703.0486 without restraints) Performing minimization step: 238. Total energy = 127113.9766 kcal/mol (126899.3687 without restraints) Performing minimization step: 239. Total energy = 125340.7813 kcal/mol (125130.2109 without restraints) Performing minimization step: 240. Total energy = 123601.4057 kcal/mol (123394.7799 without restraints) Performing minimization step: 241. Total energy = 121895.0732 kcal/mol (121692.3016 without restraints) Performing minimization step: 242. Total energy = 120221.0281 kcal/mol (120022.0228 without restraints) Performing minimization step: 243. Total energy = 118578.5350 kcal/mol (118383.2101 without restraints) Performing minimization step: 244. Total energy = 116966.8777 kcal/mol (116775.1500 without restraints) Performing minimization step: 245. Total energy = 115385.3593 kcal/mol (115197.1476 without restraints) Performing minimization step: 246. Total energy = 113833.3015 kcal/mol (113648.5268 without restraints) Performing minimization step: 247. Total energy = 112310.0435 kcal/mol (112128.6287 without restraints) Performing minimization step: 248. Total energy = 110814.9420 kcal/mol (110636.8122 without restraints) Performing minimization step: 249. Total energy = 109347.3708 kcal/mol (109172.4531 without restraints) Performing minimization step: 250. Total energy = 107906.7200 kcal/mol (107734.9432 without restraints) Performing minimization step: 251. Total energy = 106492.3954 kcal/mol (106323.6905 without restraints) Performing minimization step: 252. Total energy = 105103.8187 kcal/mol (104938.1182 without restraints) Performing minimization step: 253. Total energy = 103740.4266 kcal/mol (103577.6649 without restraints) Performing minimization step: 254. Total energy = 102401.6693 kcal/mol (102241.7824 without restraints) Performing minimization step: 255. Total energy = 101087.0122 kcal/mol (100929.9377 without restraints) Performing minimization step: 256. Total energy = 99795.9345 kcal/mol (99641.6118 without restraints) Performing minimization step: 257. Total energy = 98527.9283 kcal/mol (98376.2982 without restraints) Performing minimization step: 258. Total energy = 97282.4987 kcal/mol (97133.5033 without restraints) Performing minimization step: 259. Total energy = 96059.1635 kcal/mol (95912.7469 without restraints) Performing minimization step: 260. Total energy = 94857.4527 kcal/mol (94713.5601 without restraints) Performing minimization step: 261. Total energy = 93676.9082 kcal/mol (93535.4861 without restraints) Performing minimization step: 262. Total energy = 92517.0833 kcal/mol (92378.0797 without restraints) Performing minimization step: 263. Total energy = 91377.5426 kcal/mol (91240.9066 without restraints) Performing minimization step: 264. Total energy = 90257.8614 kcal/mol (90123.5436 without restraints) Performing minimization step: 265. Total energy = 89157.6257 kcal/mol (89025.5778 without restraints) Performing minimization step: 266. Total energy = 88076.4318 kcal/mol (87946.6068 without restraints) Performing minimization step: 267. Total energy = 87013.8860 kcal/mol (86886.2379 without restraints) Performing minimization step: 268. Total energy = 85969.6040 kcal/mol (85844.0880 without restraints) Performing minimization step: 269. Total energy = 84943.2112 kcal/mol (84819.7838 without restraints) Performing minimization step: 270. Total energy = 83934.3422 kcal/mol (83812.9605 without restraints) Performing minimization step: 271. Total energy = 82942.6401 kcal/mol (82823.2626 without restraints) Performing minimization step: 272. Total energy = 81967.7569 kcal/mol (81850.3431 without restraints) Performing minimization step: 273. Total energy = 81009.3530 kcal/mol (80893.8633 without restraints) Performing minimization step: 274. Total energy = 80067.0970 kcal/mol (79953.4926 without restraints) Performing minimization step: 275. Total energy = 79140.6652 kcal/mol (79028.9084 without restraints) Performing minimization step: 276. Total energy = 78229.7418 kcal/mol (78119.7958 without restraints) Performing minimization step: 277. Total energy = 77334.0184 kcal/mol (77225.8472 without restraints) Performing minimization step: 278. Total energy = 76453.1940 kcal/mol (76346.7625 without restraints) Performing minimization step: 279. Total energy = 75586.9742 kcal/mol (75482.2481 without restraints) Performing minimization step: 280. Total energy = 74735.0725 kcal/mol (74632.0182 without restraints) Performing minimization step: 281. Total energy = 73897.2082 kcal/mol (73795.7931 without restraints) Performing minimization step: 282. Total energy = 73073.1074 kcal/mol (72973.2994 without restraints) Performing minimization step: 283. Total energy = 72262.5024 kcal/mol (72164.2704 without restraints) Performing minimization step: 284. Total energy = 71465.1320 kcal/mol (71368.4454 without restraints) Performing minimization step: 285. Total energy = 70680.7405 kcal/mol (70585.5696 without restraints) Performing minimization step: 286. Total energy = 69909.0783 kcal/mol (69815.3939 without restraints) Performing minimization step: 287. Total energy = 69149.9019 kcal/mol (69057.6755 without restraints) Performing minimization step: 288. Total energy = 68402.9726 kcal/mol (68312.1764 without restraints) Performing minimization step: 289. Total energy = 67668.0574 kcal/mol (67578.6642 without restraints) Performing minimization step: 290. Total energy = 66944.9285 kcal/mol (66856.9118 without restraints) Performing minimization step: 291. Total energy = 66233.3632 kcal/mol (66146.6969 without restraints) Performing minimization step: 292. Total energy = 65533.1437 kcal/mol (65447.8023 without restraints) Performing minimization step: 293. Total energy = 64844.0570 kcal/mol (64760.0157 without restraints) Performing minimization step: 294. Total energy = 64165.8951 kcal/mol (64083.1297 without restraints) Performing minimization step: 295. Total energy = 63498.4544 kcal/mol (63416.9410 without restraints) Performing minimization step: 296. Total energy = 62841.5355 kcal/mol (62761.2508 without restraints) Performing minimization step: 297. Total energy = 62194.9435 kcal/mol (62115.8649 without restraints) Performing minimization step: 298. Total energy = 61558.4880 kcal/mol (61480.5931 without restraints) Performing minimization step: 299. Total energy = 60931.9822 kcal/mol (60855.2493 without restraints) Performing minimization step: 300. Total energy = 60315.2438 kcal/mol (60239.6515 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 59708.0939 kcal/mol (59633.6214 without restraints) Performing minimization step: 302. Total energy = 59110.3582 kcal/mol (59036.9850 without restraints) Performing minimization step: 303. Total energy = 58521.8653 kcal/mol (58449.5715 without restraints) Performing minimization step: 304. Total energy = 57942.4478 kcal/mol (57871.2139 without restraints) Performing minimization step: 305. Total energy = 57371.9421 kcal/mol (57301.7488 without restraints) Performing minimization step: 306. Total energy = 56810.1871 kcal/mol (56741.0157 without restraints) Performing minimization step: 307. Total energy = 56257.0261 kcal/mol (56188.8583 without restraints) Performing minimization step: 308. Total energy = 55712.3050 kcal/mol (55645.1228 without restraints) Performing minimization step: 309. Total energy = 55175.8733 kcal/mol (55109.6591 without restraints) Performing minimization step: 310. Total energy = 54647.5835 kcal/mol (54582.3199 without restraints) Performing minimization step: 311. Total energy = 54127.2909 kcal/mol (54062.9612 without restraints) Performing minimization step: 312. Total energy = 53614.8541 kcal/mol (53551.4417 without restraints) Performing minimization step: 313. Total energy = 53110.1343 kcal/mol (53047.6230 without restraints) Performing minimization step: 314. Total energy = 52612.9958 kcal/mol (52551.3697 without restraints) Performing minimization step: 315. Total energy = 52123.3054 kcal/mol (52062.5490 without restraints) Performing minimization step: 316. Total energy = 51640.9328 kcal/mol (51581.0308 without restraints) Performing minimization step: 317. Total energy = 51165.7502 kcal/mol (51106.6876 without restraints) Performing minimization step: 318. Total energy = 50697.6323 kcal/mol (50639.3946 without restraints) Performing minimization step: 319. Total energy = 50236.4565 kcal/mol (50179.0293 without restraints) Performing minimization step: 320. Total energy = 49782.1024 kcal/mol (49725.4717 without restraints) Performing minimization step: 321. Total energy = 49334.4522 kcal/mol (49278.6041 without restraints) Performing minimization step: 322. Total energy = 48893.3904 kcal/mol (48838.3114 without restraints) Performing minimization step: 323. Total energy = 48458.8035 kcal/mol (48404.4803 without restraints) Performing minimization step: 324. Total energy = 48030.5805 kcal/mol (47977.0004 without restraints) Performing minimization step: 325. Total energy = 47608.6128 kcal/mol (47555.7629 without restraints) Performing minimization step: 326. Total energy = 47192.7934 kcal/mol (47140.6612 without restraints) Performing minimization step: 327. Total energy = 46783.0177 kcal/mol (46731.5909 without restraints) Performing minimization step: 328. Total energy = 46379.1832 kcal/mol (46328.4499 without restraints) Performing minimization step: 329. Total energy = 45981.1888 kcal/mol (45931.1372 without restraints) Performing minimization step: 330. Total energy = 45588.9362 kcal/mol (45539.5546 without restraints) Performing minimization step: 331. Total energy = 45202.3281 kcal/mol (45153.6054 without restraints) Performing minimization step: 332. Total energy = 44821.2700 kcal/mol (44773.1950 without restraints) Performing minimization step: 333. Total energy = 44445.6682 kcal/mol (44398.2300 without restraints) Performing minimization step: 334. Total energy = 44075.4315 kcal/mol (44028.6194 without restraints) Performing minimization step: 335. Total energy = 43710.4703 kcal/mol (43664.2738 without restraints) Performing minimization step: 336. Total energy = 43350.6965 kcal/mol (43305.1054 without restraints) Performing minimization step: 337. Total energy = 42996.0240 kcal/mol (42951.0281 without restraints) Performing minimization step: 338. Total energy = 42646.3679 kcal/mol (42601.9573 without restraints) Performing minimization step: 339. Total energy = 42301.6453 kcal/mol (42257.8103 without restraints) Performing minimization step: 340. Total energy = 41961.7742 kcal/mol (41918.5053 without restraints) Performing minimization step: 341. Total energy = 41626.6749 kcal/mol (41583.9627 without restraints) Performing minimization step: 342. Total energy = 41296.2690 kcal/mol (41254.1043 without restraints) Performing minimization step: 343. Total energy = 40970.4789 kcal/mol (40928.8527 without restraints) Performing minimization step: 344. Total energy = 40649.2292 kcal/mol (40608.1325 without restraints) Performing minimization step: 345. Total energy = 40332.4455 kcal/mol (40291.8698 without restraints) Performing minimization step: 346. Total energy = 40020.0554 kcal/mol (39979.9921 without restraints) Performing minimization step: 347. Total energy = 39711.9864 kcal/mol (39672.4272 without restraints) Performing minimization step: 348. Total energy = 39408.1687 kcal/mol (39369.1053 without restraints) Performing minimization step: 349. Total energy = 39108.5334 kcal/mol (39069.9577 without restraints) Performing minimization step: 350. Total energy = 38813.0126 kcal/mol (38774.9167 without restraints) Performing minimization step: 351. Total energy = 38521.5398 kcal/mol (38483.9159 without restraints) Performing minimization step: 352. Total energy = 38234.0497 kcal/mol (38196.8903 without restraints) Performing minimization step: 353. Total energy = 37950.4781 kcal/mol (37913.7755 without restraints) Performing minimization step: 354. Total energy = 37670.7623 kcal/mol (37634.5093 without restraints) Performing minimization step: 355. Total energy = 37394.8405 kcal/mol (37359.0298 without restraints) Performing minimization step: 356. Total energy = 37122.6518 kcal/mol (37087.2762 without restraints) Performing minimization step: 357. Total energy = 36854.1362 kcal/mol (36819.1888 without restraints) Performing minimization step: 358. Total energy = 36589.2354 kcal/mol (36554.7094 without restraints) Performing minimization step: 359. Total energy = 36327.8919 kcal/mol (36293.7804 without restraints) Performing minimization step: 360. Total energy = 36070.0491 kcal/mol (36036.3456 without restraints) Performing minimization step: 361. Total energy = 35815.6516 kcal/mol (35782.3497 without restraints) Performing minimization step: 362. Total energy = 35564.6450 kcal/mol (35531.7381 without restraints) Performing minimization step: 363. Total energy = 35316.9756 kcal/mol (35284.4576 without restraints) Performing minimization step: 364. Total energy = 35072.5908 kcal/mol (35040.4556 without restraints) Performing minimization step: 365. Total energy = 34831.4386 kcal/mol (34799.6800 without restraints) Performing minimization step: 366. Total energy = 34593.4684 kcal/mol (34562.0805 without restraints) Performing minimization step: 367. Total energy = 34358.6305 kcal/mol (34327.6074 without restraints) Performing minimization step: 368. Total energy = 34126.8755 kcal/mol (34096.2115 without restraints) Performing minimization step: 369. Total energy = 33898.1553 kcal/mol (33867.8448 without restraints) Performing minimization step: 370. Total energy = 33672.4227 kcal/mol (33642.4602 without restraints) Performing minimization step: 371. Total energy = 33449.6310 kcal/mol (33420.0110 without restraints) Performing minimization step: 372. Total energy = 33229.7349 kcal/mol (33200.4520 without restraints) Performing minimization step: 373. Total energy = 33012.6887 kcal/mol (32983.7377 without restraints) Performing minimization step: 374. Total energy = 32798.4494 kcal/mol (32769.8251 without restraints) Performing minimization step: 375. Total energy = 32586.9727 kcal/mol (32558.6701 without restraints) Performing minimization step: 376. Total energy = 32378.2159 kcal/mol (32350.2299 without restraints) Performing minimization step: 377. Total energy = 32172.1374 kcal/mol (32144.4631 without restraints) Performing minimization step: 378. Total energy = 31968.6959 kcal/mol (31941.3285 without restraints) Performing minimization step: 379. Total energy = 31767.8509 kcal/mol (31740.7858 without restraints) Performing minimization step: 380. Total energy = 31569.5627 kcal/mol (31542.7950 without restraints) Performing minimization step: 381. Total energy = 31373.7920 kcal/mol (31347.3174 without restraints) Performing minimization step: 382. Total energy = 31180.5006 kcal/mol (31154.3144 without restraints) Performing minimization step: 383. Total energy = 30989.6505 kcal/mol (30963.7484 without restraints) Performing minimization step: 384. Total energy = 30801.2046 kcal/mol (30775.5821 without restraints) Performing minimization step: 385. Total energy = 30615.1263 kcal/mol (30589.7791 without restraints) Performing minimization step: 386. Total energy = 30431.3795 kcal/mol (30406.3036 without restraints) Performing minimization step: 387. Total energy = 30249.9292 kcal/mol (30225.1203 without restraints) Performing minimization step: 388. Total energy = 30070.7404 kcal/mol (30046.1945 without restraints) Performing minimization step: 389. Total energy = 29893.7793 kcal/mol (29869.4925 without restraints) Performing minimization step: 390. Total energy = 29719.0121 kcal/mol (29694.9804 without restraints) Performing minimization step: 391. Total energy = 29546.4057 kcal/mol (29522.6250 without restraints) Performing minimization step: 392. Total energy = 29375.9275 kcal/mol (29352.3943 without restraints) Performing minimization step: 393. Total energy = 29207.5458 kcal/mol (29184.2563 without restraints) Performing minimization step: 394. Total energy = 29041.2291 kcal/mol (29018.1796 without restraints) Performing minimization step: 395. Total energy = 28876.9467 kcal/mol (28854.1335 without restraints) Performing minimization step: 396. Total energy = 28714.6680 kcal/mol (28692.0877 without restraints) Performing minimization step: 397. Total energy = 28554.3633 kcal/mol (28532.0123 without restraints) Performing minimization step: 398. Total energy = 28396.0031 kcal/mol (28373.8780 without restraints) Performing minimization step: 399. Total energy = 28239.5586 kcal/mol (28217.6560 without restraints) Performing minimization step: 400. Total energy = 28085.0014 kcal/mol (28063.3180 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 27932.3034 kcal/mol (27910.8360 without restraints) Performing minimization step: 402. Total energy = 27781.4373 kcal/mol (27760.1825 without restraints) Performing minimization step: 403. Total energy = 27632.3760 kcal/mol (27611.3309 without restraints) Performing minimization step: 404. Total energy = 27485.0931 kcal/mol (27464.2544 without restraints) Performing minimization step: 405. Total energy = 27339.5618 kcal/mol (27318.9264 without restraints) Performing minimization step: 406. Total energy = 27195.7568 kcal/mol (27175.3218 without restraints) Performing minimization step: 407. Total energy = 27053.6526 kcal/mol (27033.4150 without restraints) Performing minimization step: 408. Total energy = 26913.2242 kcal/mol (26893.1812 without restraints) Performing minimization step: 409. Total energy = 26774.4476 kcal/mol (26754.5961 without restraints) Performing minimization step: 410. Total energy = 26637.2982 kcal/mol (26617.6355 without restraints) Performing minimization step: 411. Total energy = 26501.7524 kcal/mol (26482.2757 without restraints) Performing minimization step: 412. Total energy = 26367.7868 kcal/mol (26348.4934 without restraints) Performing minimization step: 413. Total energy = 26235.3785 kcal/mol (26216.2658 without restraints) Performing minimization step: 414. Total energy = 26104.5046 kcal/mol (26085.5697 without restraints) Performing minimization step: 415. Total energy = 25975.1433 kcal/mol (25956.3838 without restraints) Performing minimization step: 416. Total energy = 25847.2725 kcal/mol (25828.6858 without restraints) Performing minimization step: 417. Total energy = 25720.8707 kcal/mol (25702.4543 without restraints) Performing minimization step: 418. Total energy = 25595.9166 kcal/mol (25577.6680 without restraints) Performing minimization step: 419. Total energy = 25472.3895 kcal/mol (25454.3064 without restraints) Performing minimization step: 420. Total energy = 25350.2688 kcal/mol (25332.3485 without restraints) Performing minimization step: 421. Total energy = 25229.5342 kcal/mol (25211.7746 without restraints) Performing minimization step: 422. Total energy = 25110.1658 kcal/mol (25092.5645 without restraints) Performing minimization step: 423. Total energy = 24992.1440 kcal/mol (24974.6986 without restraints) Performing minimization step: 424. Total energy = 24875.4495 kcal/mol (24858.1579 without restraints) Performing minimization step: 425. Total energy = 24760.0630 kcal/mol (24742.9229 without restraints) Performing minimization step: 426. Total energy = 24645.9669 kcal/mol (24628.9761 without restraints) Performing minimization step: 427. Total energy = 24533.1419 kcal/mol (24516.2983 without restraints) Performing minimization step: 428. Total energy = 24421.5701 kcal/mol (24404.8716 without restraints) Performing minimization step: 429. Total energy = 24311.2335 kcal/mol (24294.6779 without restraints) Performing minimization step: 430. Total energy = 24202.1150 kcal/mol (24185.7003 without restraints) Performing minimization step: 431. Total energy = 24094.1970 kcal/mol (24077.9213 without restraints) Performing minimization step: 432. Total energy = 23987.4628 kcal/mol (23971.3242 without restraints) Performing minimization step: 433. Total energy = 23881.8955 kcal/mol (23865.8917 without restraints) Performing minimization step: 434. Total energy = 23777.4787 kcal/mol (23761.6080 without restraints) Performing minimization step: 435. Total energy = 23674.1957 kcal/mol (23658.4560 without restraints) Performing minimization step: 436. Total energy = 23572.0309 kcal/mol (23556.4206 without restraints) Performing minimization step: 437. Total energy = 23470.9687 kcal/mol (23455.4859 without restraints) Performing minimization step: 438. Total energy = 23370.9937 kcal/mol (23355.6366 without restraints) Performing minimization step: 439. Total energy = 23272.0900 kcal/mol (23256.8568 without restraints) Performing minimization step: 440. Total energy = 23174.2431 kcal/mol (23159.1320 without restraints) Performing minimization step: 441. Total energy = 23077.4383 kcal/mol (23062.4476 without restraints) Performing minimization step: 442. Total energy = 22981.6609 kcal/mol (22966.7889 without restraints) Performing minimization step: 443. Total energy = 22886.8969 kcal/mol (22872.1420 without restraints) Performing minimization step: 444. Total energy = 22793.1313 kcal/mol (22778.4917 without restraints) Performing minimization step: 445. Total energy = 22700.3508 kcal/mol (22685.8249 without restraints) Performing minimization step: 446. Total energy = 22608.5416 kcal/mol (22594.1279 without restraints) Performing minimization step: 447. Total energy = 22517.6902 kcal/mol (22503.3871 without restraints) Performing minimization step: 448. Total energy = 22427.7836 kcal/mol (22413.5896 without restraints) Performing minimization step: 449. Total energy = 22338.8084 kcal/mol (22324.7219 without restraints) Performing minimization step: 450. Total energy = 22250.7515 kcal/mol (22236.7710 without restraints) Performing minimization step: 451. Total energy = 22163.6005 kcal/mol (22149.7246 without restraints) Performing minimization step: 452. Total energy = 22077.3429 kcal/mol (22063.5700 without restraints) Performing minimization step: 453. Total energy = 21991.9663 kcal/mol (21978.2950 without restraints) Performing minimization step: 454. Total energy = 21907.4586 kcal/mol (21893.8875 without restraints) Performing minimization step: 455. Total energy = 21823.8080 kcal/mol (21810.3358 without restraints) Performing minimization step: 456. Total energy = 21741.0024 kcal/mol (21727.6277 without restraints) Performing minimization step: 457. Total energy = 21659.0303 kcal/mol (21645.7517 without restraints) Performing minimization step: 458. Total energy = 21577.8804 kcal/mol (21564.6966 without restraints) Performing minimization step: 459. Total energy = 21497.5412 kcal/mol (21484.4508 without restraints) Performing minimization step: 460. Total energy = 21418.0022 kcal/mol (21405.0040 without restraints) Performing minimization step: 461. Total energy = 21339.2521 kcal/mol (21326.3448 without restraints) Performing minimization step: 462. Total energy = 21261.2799 kcal/mol (21248.4622 without restraints) Performing minimization step: 463. Total energy = 21184.0752 kcal/mol (21171.3460 without restraints) Performing minimization step: 464. Total energy = 21107.6275 kcal/mol (21094.9855 without restraints) Performing minimization step: 465. Total energy = 21031.9267 kcal/mol (21019.3706 without restraints) Performing minimization step: 466. Total energy = 20956.9625 kcal/mol (20944.4915 without restraints) Performing minimization step: 467. Total energy = 20882.7250 kcal/mol (20870.3375 without restraints) Performing minimization step: 468. Total energy = 20809.2043 kcal/mol (20796.8993 without restraints) Performing minimization step: 469. Total energy = 20736.3909 kcal/mol (20724.1673 without restraints) Performing minimization step: 470. Total energy = 20664.2748 kcal/mol (20652.1316 without restraints) Performing minimization step: 471. Total energy = 20592.8473 kcal/mol (20580.7832 without restraints) Performing minimization step: 472. Total energy = 20522.0982 kcal/mol (20510.1122 without restraints) Performing minimization step: 473. Total energy = 20452.0187 kcal/mol (20440.1098 without restraints) Performing minimization step: 474. Total energy = 20382.6000 kcal/mol (20370.7671 without restraints) Performing minimization step: 475. Total energy = 20313.8331 kcal/mol (20302.0751 without restraints) Performing minimization step: 476. Total energy = 20245.7094 kcal/mol (20234.0254 without restraints) Performing minimization step: 477. Total energy = 20178.2199 kcal/mol (20166.6089 without restraints) Performing minimization step: 478. Total energy = 20111.3567 kcal/mol (20099.8177 without restraints) Performing minimization step: 479. Total energy = 20045.1107 kcal/mol (20033.6427 without restraints) Performing minimization step: 480. Total energy = 19979.4745 kcal/mol (19968.0766 without restraints) Performing minimization step: 481. Total energy = 19914.4392 kcal/mol (19903.1103 without restraints) Performing minimization step: 482. Total energy = 19849.9970 kcal/mol (19838.7363 without restraints) Performing minimization step: 483. Total energy = 19786.1400 kcal/mol (19774.9466 without restraints) Performing minimization step: 484. Total energy = 19722.8607 kcal/mol (19711.7335 without restraints) Performing minimization step: 485. Total energy = 19660.1510 kcal/mol (19649.0894 without restraints) Performing minimization step: 486. Total energy = 19598.0036 kcal/mol (19587.0066 without restraints) Performing minimization step: 487. Total energy = 19536.4110 kcal/mol (19525.4777 without restraints) Performing minimization step: 488. Total energy = 19475.3658 kcal/mol (19464.4954 without restraints) Performing minimization step: 489. Total energy = 19414.8609 kcal/mol (19404.0525 without restraints) Performing minimization step: 490. Total energy = 19354.8890 kcal/mol (19344.1418 without restraints) Performing minimization step: 491. Total energy = 19295.4431 kcal/mol (19284.7563 without restraints) Performing minimization step: 492. Total energy = 19236.5164 kcal/mol (19225.8892 without restraints) Performing minimization step: 493. Total energy = 19178.1017 kcal/mol (19167.5334 without restraints) Performing minimization step: 494. Total energy = 19120.1926 kcal/mol (19109.6822 without restraints) Performing minimization step: 495. Total energy = 19062.7821 kcal/mol (19052.3290 without restraints) Performing minimization step: 496. Total energy = 19005.8640 kcal/mol (18995.4674 without restraints) Performing minimization step: 497. Total energy = 18949.4318 kcal/mol (18939.0909 without restraints) Performing minimization step: 498. Total energy = 18893.4790 kcal/mol (18883.1931 without restraints) Performing minimization step: 499. Total energy = 18837.9991 kcal/mol (18827.7676 without restraints) Performing minimization step: 500. Total energy = 18782.9865 kcal/mol (18772.8086 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 18728.4346 kcal/mol (18718.3096 without restraints) Performing minimization step: 502. Total energy = 18674.3376 kcal/mol (18664.2646 without restraints) Performing minimization step: 503. Total energy = 18620.6889 kcal/mol (18610.6674 without restraints) Performing minimization step: 504. Total energy = 18567.4836 kcal/mol (18557.5129 without restraints) Performing minimization step: 505. Total energy = 18514.7155 kcal/mol (18504.7950 without restraints) Performing minimization step: 506. Total energy = 18462.3789 kcal/mol (18452.5080 without restraints) Performing minimization step: 507. Total energy = 18410.4682 kcal/mol (18400.6461 without restraints) Performing minimization step: 508. Total energy = 18358.9778 kcal/mol (18349.2038 without restraints) Performing minimization step: 509. Total energy = 18307.9024 kcal/mol (18298.1762 without restraints) Performing minimization step: 510. Total energy = 18257.2365 kcal/mol (18247.5570 without restraints) Performing minimization step: 511. Total energy = 18206.9742 kcal/mol (18197.3411 without restraints) Performing minimization step: 512. Total energy = 18157.1110 kcal/mol (18147.5237 without restraints) Performing minimization step: 513. Total energy = 18107.6415 kcal/mol (18098.0993 without restraints) Performing minimization step: 514. Total energy = 18058.5606 kcal/mol (18049.0629 without restraints) Performing minimization step: 515. Total energy = 18009.8631 kcal/mol (18000.4094 without restraints) Performing minimization step: 516. Total energy = 17961.5442 kcal/mol (17952.1339 without restraints) Performing minimization step: 517. Total energy = 17913.5982 kcal/mol (17904.2306 without restraints) Performing minimization step: 518. Total energy = 17866.0214 kcal/mol (17856.6961 without restraints) Performing minimization step: 519. Total energy = 17818.8088 kcal/mol (17809.5253 without restraints) Performing minimization step: 520. Total energy = 17771.9562 kcal/mol (17762.7139 without restraints) Performing minimization step: 521. Total energy = 17725.4571 kcal/mol (17716.2555 without restraints) Performing minimization step: 522. Total energy = 17679.3086 kcal/mol (17670.1471 without restraints) Performing minimization step: 523. Total energy = 17633.5054 kcal/mol (17624.3834 without restraints) Performing minimization step: 524. Total energy = 17588.0431 kcal/mol (17578.9603 without restraints) Performing minimization step: 525. Total energy = 17542.9177 kcal/mol (17533.8735 without restraints) Performing minimization step: 526. Total energy = 17498.1244 kcal/mol (17489.1183 without restraints) Performing minimization step: 527. Total energy = 17453.6589 kcal/mol (17444.6903 without restraints) Performing minimization step: 528. Total energy = 17409.5173 kcal/mol (17400.5858 without restraints) Performing minimization step: 529. Total energy = 17365.6949 kcal/mol (17356.8001 without restraints) Performing minimization step: 530. Total energy = 17322.1876 kcal/mol (17313.3289 without restraints) Performing minimization step: 531. Total energy = 17278.9918 kcal/mol (17270.1688 without restraints) Performing minimization step: 532. Total energy = 17236.1029 kcal/mol (17227.3152 without restraints) Performing minimization step: 533. Total energy = 17193.5174 kcal/mol (17184.7644 without restraints) Performing minimization step: 534. Total energy = 17151.2314 kcal/mol (17142.5128 without restraints) Performing minimization step: 535. Total energy = 17109.2409 kcal/mol (17100.5562 without restraints) Performing minimization step: 536. Total energy = 17067.5421 kcal/mol (17058.8908 without restraints) Performing minimization step: 537. Total energy = 17026.1312 kcal/mol (17017.5130 without restraints) Performing minimization step: 538. Total energy = 16985.0044 kcal/mol (16976.4188 without restraints) Performing minimization step: 539. Total energy = 16944.1582 kcal/mol (16935.6047 without restraints) Performing minimization step: 540. Total energy = 16903.5890 kcal/mol (16895.0673 without restraints) Performing minimization step: 541. Total energy = 16863.2930 kcal/mol (16854.8027 without restraints) Performing minimization step: 542. Total energy = 16823.2667 kcal/mol (16814.8075 without restraints) Performing minimization step: 543. Total energy = 16783.5071 kcal/mol (16775.0784 without restraints) Performing minimization step: 544. Total energy = 16744.0098 kcal/mol (16735.6113 without restraints) Performing minimization step: 545. Total energy = 16704.7723 kcal/mol (16696.4034 without restraints) Performing minimization step: 546. Total energy = 16665.7909 kcal/mol (16657.4516 without restraints) Performing minimization step: 547. Total energy = 16627.0622 kcal/mol (16618.7519 without restraints) Performing minimization step: 548. Total energy = 16588.5836 kcal/mol (16580.3020 without restraints) Performing minimization step: 549. Total energy = 16550.3516 kcal/mol (16542.0984 without restraints) Performing minimization step: 550. Total energy = 16512.3630 kcal/mol (16504.1377 without restraints) Performing minimization step: 551. Total energy = 16474.6144 kcal/mol (16466.4168 without restraints) Performing minimization step: 552. Total energy = 16437.1027 kcal/mol (16428.9323 without restraints) Performing minimization step: 553. Total energy = 16399.8251 kcal/mol (16391.6817 without restraints) Performing minimization step: 554. Total energy = 16362.7786 kcal/mol (16354.6618 without restraints) Performing minimization step: 555. Total energy = 16325.9603 kcal/mol (16317.8697 without restraints) Performing minimization step: 556. Total energy = 16289.3673 kcal/mol (16281.3025 without restraints) Performing minimization step: 557. Total energy = 16252.9966 kcal/mol (16244.9575 without restraints) Performing minimization step: 558. Total energy = 16216.8457 kcal/mol (16208.8319 without restraints) Performing minimization step: 559. Total energy = 16180.9115 kcal/mol (16172.9227 without restraints) Performing minimization step: 560. Total energy = 16145.1909 kcal/mol (16137.2268 without restraints) Performing minimization step: 561. Total energy = 16109.6821 kcal/mol (16101.7423 without restraints) Performing minimization step: 562. Total energy = 16074.3823 kcal/mol (16066.4664 without restraints) Performing minimization step: 563. Total energy = 16039.2881 kcal/mol (16031.3961 without restraints) Performing minimization step: 564. Total energy = 16004.3975 kcal/mol (15996.5290 without restraints) Performing minimization step: 565. Total energy = 15969.7079 kcal/mol (15961.8626 without restraints) Performing minimization step: 566. Total energy = 15935.2167 kcal/mol (15927.3943 without restraints) Performing minimization step: 567. Total energy = 15900.9219 kcal/mol (15893.1222 without restraints) Performing minimization step: 568. Total energy = 15866.8204 kcal/mol (15859.0430 without restraints) Performing minimization step: 569. Total energy = 15832.9098 kcal/mol (15825.1544 without restraints) Performing minimization step: 570. Total energy = 15799.1879 kcal/mol (15791.4544 without restraints) Performing minimization step: 571. Total energy = 15765.6525 kcal/mol (15757.9406 without restraints) Performing minimization step: 572. Total energy = 15732.3011 kcal/mol (15724.6105 without restraints) Performing minimization step: 573. Total energy = 15699.1317 kcal/mol (15691.4621 without restraints) Performing minimization step: 574. Total energy = 15666.1423 kcal/mol (15658.4935 without restraints) Performing minimization step: 575. Total energy = 15633.3297 kcal/mol (15625.7015 without restraints) Performing minimization step: 576. Total energy = 15600.6923 kcal/mol (15593.0845 without restraints) Performing minimization step: 577. Total energy = 15568.2283 kcal/mol (15560.6405 without restraints) Performing minimization step: 578. Total energy = 15535.9350 kcal/mol (15528.3670 without restraints) Performing minimization step: 579. Total energy = 15503.8109 kcal/mol (15496.2626 without restraints) Performing minimization step: 580. Total energy = 15471.8536 kcal/mol (15464.3247 without restraints) Performing minimization step: 581. Total energy = 15440.0615 kcal/mol (15432.5517 without restraints) Performing minimization step: 582. Total energy = 15408.4323 kcal/mol (15400.9415 without restraints) Performing minimization step: 583. Total energy = 15376.9644 kcal/mol (15369.4924 without restraints) Performing minimization step: 584. Total energy = 15345.6555 kcal/mol (15338.2021 without restraints) Performing minimization step: 585. Total energy = 15314.5039 kcal/mol (15307.0687 without restraints) Performing minimization step: 586. Total energy = 15283.5077 kcal/mol (15276.0906 without restraints) Performing minimization step: 587. Total energy = 15252.6648 kcal/mol (15245.2656 without restraints) Performing minimization step: 588. Total energy = 15221.9731 kcal/mol (15214.5915 without restraints) Performing minimization step: 589. Total energy = 15191.4318 kcal/mol (15184.0678 without restraints) Performing minimization step: 590. Total energy = 15161.0387 kcal/mol (15153.6921 without restraints) Performing minimization step: 591. Total energy = 15130.7920 kcal/mol (15123.4623 without restraints) Performing minimization step: 592. Total energy = 15100.6898 kcal/mol (15093.3772 without restraints) Performing minimization step: 593. Total energy = 15070.7314 kcal/mol (15063.4355 without restraints) Performing minimization step: 594. Total energy = 15040.9142 kcal/mol (15033.6350 without restraints) Performing minimization step: 595. Total energy = 15011.2368 kcal/mol (15003.9739 without restraints) Performing minimization step: 596. Total energy = 14981.6976 kcal/mol (14974.4510 without restraints) Performing minimization step: 597. Total energy = 14952.2952 kcal/mol (14945.0646 without restraints) Performing minimization step: 598. Total energy = 14923.0279 kcal/mol (14915.8132 without restraints) Performing minimization step: 599. Total energy = 14893.8943 kcal/mol (14886.6953 without restraints) Performing minimization step: 600. Total energy = 14864.8929 kcal/mol (14857.7094 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 14836.0221 kcal/mol (14828.8540 without restraints) Performing minimization step: 602. Total energy = 14807.2793 kcal/mol (14800.1265 without restraints) Performing minimization step: 603. Total energy = 14778.6655 kcal/mol (14771.5277 without restraints) Performing minimization step: 604. Total energy = 14750.1781 kcal/mol (14743.0552 without restraints) Performing minimization step: 605. Total energy = 14721.8155 kcal/mol (14714.7074 without restraints) Performing minimization step: 606. Total energy = 14693.5769 kcal/mol (14686.4834 without restraints) Performing minimization step: 607. Total energy = 14665.4604 kcal/mol (14658.3814 without restraints) Performing minimization step: 608. Total energy = 14637.4647 kcal/mol (14630.4000 without restraints) Performing minimization step: 609. Total energy = 14609.5889 kcal/mol (14602.5384 without restraints) Performing minimization step: 610. Total energy = 14581.8316 kcal/mol (14574.7952 without restraints) Performing minimization step: 611. Total energy = 14554.1910 kcal/mol (14547.1685 without restraints) Performing minimization step: 612. Total energy = 14526.6662 kcal/mol (14519.6574 without restraints) Performing minimization step: 613. Total energy = 14499.2564 kcal/mol (14492.2613 without restraints) Performing minimization step: 614. Total energy = 14471.9601 kcal/mol (14464.9785 without restraints) Performing minimization step: 615. Total energy = 14444.7761 kcal/mol (14437.8079 without restraints) Performing minimization step: 616. Total energy = 14417.7032 kcal/mol (14410.7482 without restraints) Performing minimization step: 617. Total energy = 14390.7402 kcal/mol (14383.7982 without restraints) Performing minimization step: 618. Total energy = 14363.8863 kcal/mol (14356.9575 without restraints) Performing minimization step: 619. Total energy = 14337.1398 kcal/mol (14330.2239 without restraints) Performing minimization step: 620. Total energy = 14310.5001 kcal/mol (14303.5969 without restraints) Performing minimization step: 621. Total energy = 14283.9661 kcal/mol (14277.0756 without restraints) Performing minimization step: 622. Total energy = 14257.5365 kcal/mol (14250.6585 without restraints) Performing minimization step: 623. Total energy = 14231.2101 kcal/mol (14224.3446 without restraints) Performing minimization step: 624. Total energy = 14204.9862 kcal/mol (14198.1329 without restraints) Performing minimization step: 625. Total energy = 14178.8635 kcal/mol (14172.0224 without restraints) Performing minimization step: 626. Total energy = 14152.8416 kcal/mol (14146.0127 without restraints) Performing minimization step: 627. Total energy = 14126.9189 kcal/mol (14120.1020 without restraints) Performing minimization step: 628. Total energy = 14101.0945 kcal/mol (14094.2893 without restraints) Performing minimization step: 629. Total energy = 14075.3677 kcal/mol (14068.5745 without restraints) Performing minimization step: 630. Total energy = 14049.7378 kcal/mol (14042.9563 without restraints) Performing minimization step: 631. Total energy = 14024.2031 kcal/mol (14017.4330 without restraints) Performing minimization step: 632. Total energy = 13998.7631 kcal/mol (13992.0047 without restraints) Performing minimization step: 633. Total energy = 13973.4170 kcal/mol (13966.6700 without restraints) Performing minimization step: 634. Total energy = 13948.1640 kcal/mol (13941.4282 without restraints) Performing minimization step: 635. Total energy = 13923.0028 kcal/mol (13916.2783 without restraints) Performing minimization step: 636. Total energy = 13897.9331 kcal/mol (13891.2196 without restraints) Performing minimization step: 637. Total energy = 13872.9535 kcal/mol (13866.2511 without restraints) Performing minimization step: 638. Total energy = 13848.0634 kcal/mol (13841.3719 without restraints) Performing minimization step: 639. Total energy = 13823.2620 kcal/mol (13816.5813 without restraints) Performing minimization step: 640. Total energy = 13798.5484 kcal/mol (13791.8785 without restraints) Performing minimization step: 641. Total energy = 13773.9226 kcal/mol (13767.2634 without restraints) Performing minimization step: 642. Total energy = 13749.3826 kcal/mol (13742.7341 without restraints) Performing minimization step: 643. Total energy = 13724.9280 kcal/mol (13718.2899 without restraints) Performing minimization step: 644. Total energy = 13700.5584 kcal/mol (13693.9308 without restraints) Performing minimization step: 645. Total energy = 13676.2732 kcal/mol (13669.6559 without restraints) Performing minimization step: 646. Total energy = 13652.0708 kcal/mol (13645.4638 without restraints) Performing minimization step: 647. Total energy = 13627.9509 kcal/mol (13621.3541 without restraints) Performing minimization step: 648. Total energy = 13603.9131 kcal/mol (13597.3265 without restraints) Performing minimization step: 649. Total energy = 13579.9563 kcal/mol (13573.3796 without restraints) Performing minimization step: 650. Total energy = 13556.0796 kcal/mol (13549.5130 without restraints) Performing minimization step: 651. Total energy = 13532.2831 kcal/mol (13525.7263 without restraints) Performing minimization step: 652. Total energy = 13508.5652 kcal/mol (13502.0182 without restraints) Performing minimization step: 653. Total energy = 13484.9261 kcal/mol (13478.3890 without restraints) Performing minimization step: 654. Total energy = 13461.3649 kcal/mol (13454.8375 without restraints) Performing minimization step: 655. Total energy = 13437.8810 kcal/mol (13431.3632 without restraints) Performing minimization step: 656. Total energy = 13414.4729 kcal/mol (13407.9646 without restraints) Performing minimization step: 657. Total energy = 13391.1411 kcal/mol (13384.6424 without restraints) Performing minimization step: 658. Total energy = 13367.8847 kcal/mol (13361.3954 without restraints) Performing minimization step: 659. Total energy = 13344.7031 kcal/mol (13338.2232 without restraints) Performing minimization step: 660. Total energy = 13321.5954 kcal/mol (13315.1248 without restraints) Performing minimization step: 661. Total energy = 13298.5613 kcal/mol (13292.1000 without restraints) Performing minimization step: 662. Total energy = 13275.6000 kcal/mol (13269.1478 without restraints) Performing minimization step: 663. Total energy = 13252.7105 kcal/mol (13246.2674 without restraints) Performing minimization step: 664. Total energy = 13229.8933 kcal/mol (13223.4592 without restraints) Performing minimization step: 665. Total energy = 13207.1472 kcal/mol (13200.7221 without restraints) Performing minimization step: 666. Total energy = 13184.4718 kcal/mol (13178.0557 without restraints) Performing minimization step: 667. Total energy = 13161.8665 kcal/mol (13155.4593 without restraints) Performing minimization step: 668. Total energy = 13139.3306 kcal/mol (13132.9322 without restraints) Performing minimization step: 669. Total energy = 13116.8639 kcal/mol (13110.4743 without restraints) Performing minimization step: 670. Total energy = 13094.4656 kcal/mol (13088.0848 without restraints) Performing minimization step: 671. Total energy = 13072.1354 kcal/mol (13065.7633 without restraints) Performing minimization step: 672. Total energy = 13049.8728 kcal/mol (13043.5093 without restraints) Performing minimization step: 673. Total energy = 13027.6772 kcal/mol (13021.3223 without restraints) Performing minimization step: 674. Total energy = 13005.5481 kcal/mol (12999.2017 without restraints) Performing minimization step: 675. Total energy = 12983.4854 kcal/mol (12977.1476 without restraints) Performing minimization step: 676. Total energy = 12961.4881 kcal/mol (12955.1585 without restraints) Performing minimization step: 677. Total energy = 12939.5556 kcal/mol (12933.2344 without restraints) Performing minimization step: 678. Total energy = 12917.6881 kcal/mol (12911.3752 without restraints) Performing minimization step: 679. Total energy = 12895.8845 kcal/mol (12889.5800 without restraints) Performing minimization step: 680. Total energy = 12874.1447 kcal/mol (12867.8485 without restraints) Performing minimization step: 681. Total energy = 12852.4681 kcal/mol (12846.1800 without restraints) Performing minimization step: 682. Total energy = 12830.8545 kcal/mol (12824.5745 without restraints) Performing minimization step: 683. Total energy = 12809.3034 kcal/mol (12803.0315 without restraints) Performing minimization step: 684. Total energy = 12787.8143 kcal/mol (12781.5505 without restraints) Performing minimization step: 685. Total energy = 12766.3867 kcal/mol (12760.1307 without restraints) Performing minimization step: 686. Total energy = 12745.0202 kcal/mol (12738.7724 without restraints) Performing minimization step: 687. Total energy = 12723.7144 kcal/mol (12717.4745 without restraints) Performing minimization step: 688. Total energy = 12702.4690 kcal/mol (12696.2369 without restraints) Performing minimization step: 689. Total energy = 12681.2838 kcal/mol (12675.0595 without restraints) Performing minimization step: 690. Total energy = 12660.1578 kcal/mol (12653.9414 without restraints) Performing minimization step: 691. Total energy = 12639.0913 kcal/mol (12632.8827 without restraints) Performing minimization step: 692. Total energy = 12618.0838 kcal/mol (12611.8829 without restraints) Performing minimization step: 693. Total energy = 12597.1348 kcal/mol (12590.9415 without restraints) Performing minimization step: 694. Total energy = 12576.2436 kcal/mol (12570.0580 without restraints) Performing minimization step: 695. Total energy = 12555.4097 kcal/mol (12549.2317 without restraints) Performing minimization step: 696. Total energy = 12534.6332 kcal/mol (12528.4628 without restraints) Performing minimization step: 697. Total energy = 12513.9141 kcal/mol (12507.7512 without restraints) Performing minimization step: 698. Total energy = 12493.2515 kcal/mol (12487.0962 without restraints) Performing minimization step: 699. Total energy = 12472.6453 kcal/mol (12466.4974 without restraints) Performing minimization step: 700. Total energy = 12452.0951 kcal/mol (12445.9546 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 12431.6005 kcal/mol (12425.4675 without restraints) Performing minimization step: 702. Total energy = 12411.1610 kcal/mol (12405.0352 without restraints) Performing minimization step: 703. Total energy = 12390.7766 kcal/mol (12384.6582 without restraints) Performing minimization step: 704. Total energy = 12370.4467 kcal/mol (12364.3356 without restraints) Performing minimization step: 705. Total energy = 12350.1711 kcal/mol (12344.0673 without restraints) Performing minimization step: 706. Total energy = 12329.9495 kcal/mol (12323.8530 without restraints) Performing minimization step: 707. Total energy = 12309.7814 kcal/mol (12303.6920 without restraints) Performing minimization step: 708. Total energy = 12289.6668 kcal/mol (12283.5846 without restraints) Performing minimization step: 709. Total energy = 12269.6054 kcal/mol (12263.5303 without restraints) Performing minimization step: 710. Total energy = 12249.5962 kcal/mol (12243.5282 without restraints) Performing minimization step: 711. Total energy = 12229.6398 kcal/mol (12223.5789 without restraints) Performing minimization step: 712. Total energy = 12209.7355 kcal/mol (12203.6816 without restraints) Performing minimization step: 713. Total energy = 12189.8835 kcal/mol (12183.8367 without restraints) Performing minimization step: 714. Total energy = 12170.0829 kcal/mol (12164.0431 without restraints) Performing minimization step: 715. Total energy = 12150.3343 kcal/mol (12144.3013 without restraints) Performing minimization step: 716. Total energy = 12130.6358 kcal/mol (12124.6099 without restraints) Performing minimization step: 717. Total energy = 12110.9882 kcal/mol (12104.9692 without restraints) Performing minimization step: 718. Total energy = 12091.3906 kcal/mol (12085.3784 without restraints) Performing minimization step: 719. Total energy = 12071.8436 kcal/mol (12065.8383 without restraints) Performing minimization step: 720. Total energy = 12052.3466 kcal/mol (12046.3482 without restraints) Performing minimization step: 721. Total energy = 12032.8993 kcal/mol (12026.9077 without restraints) Performing minimization step: 722. Total energy = 12013.5014 kcal/mol (12007.5166 without restraints) Performing minimization step: 723. Total energy = 11994.1528 kcal/mol (11988.1746 without restraints) Performing minimization step: 724. Total energy = 11974.8530 kcal/mol (11968.8816 without restraints) Performing minimization step: 725. Total energy = 11955.6015 kcal/mol (11949.6368 without restraints) Performing minimization step: 726. Total energy = 11936.3988 kcal/mol (11930.4407 without restraints) Performing minimization step: 727. Total energy = 11917.2442 kcal/mol (11911.2928 without restraints) Performing minimization step: 728. Total energy = 11898.1376 kcal/mol (11892.1928 without restraints) Performing minimization step: 729. Total energy = 11879.0790 kcal/mol (11873.1408 without restraints) Performing minimization step: 730. Total energy = 11860.0674 kcal/mol (11854.1357 without restraints) Performing minimization step: 731. Total energy = 11841.1031 kcal/mol (11835.1780 without restraints) Performing minimization step: 732. Total energy = 11822.1861 kcal/mol (11816.2676 without restraints) Performing minimization step: 733. Total energy = 11803.3157 kcal/mol (11797.4036 without restraints) Performing minimization step: 734. Total energy = 11784.4919 kcal/mol (11778.5864 without restraints) Performing minimization step: 735. Total energy = 11765.7145 kcal/mol (11759.8153 without restraints) Performing minimization step: 736. Total energy = 11746.9830 kcal/mol (11741.0903 without restraints) Performing minimization step: 737. Total energy = 11728.2974 kcal/mol (11722.4110 without restraints) Performing minimization step: 738. Total energy = 11709.6576 kcal/mol (11703.7778 without restraints) Performing minimization step: 739. Total energy = 11691.0630 kcal/mol (11685.1895 without restraints) Performing minimization step: 740. Total energy = 11672.5138 kcal/mol (11666.6466 without restraints) Performing minimization step: 741. Total energy = 11654.0095 kcal/mol (11648.1488 without restraints) Performing minimization step: 742. Total energy = 11635.5508 kcal/mol (11629.6963 without restraints) Performing minimization step: 743. Total energy = 11617.1361 kcal/mol (11611.2879 without restraints) Performing minimization step: 744. Total energy = 11598.7659 kcal/mol (11592.9240 without restraints) Performing minimization step: 745. Total energy = 11580.4401 kcal/mol (11574.6043 without restraints) Performing minimization step: 746. Total energy = 11562.1579 kcal/mol (11556.3284 without restraints) Performing minimization step: 747. Total energy = 11543.9201 kcal/mol (11538.0968 without restraints) Performing minimization step: 748. Total energy = 11525.7255 kcal/mol (11519.9084 without restraints) Performing minimization step: 749. Total energy = 11507.5747 kcal/mol (11501.7637 without restraints) Performing minimization step: 750. Total energy = 11489.4668 kcal/mol (11483.6621 without restraints) Performing minimization step: 751. Total energy = 11471.4023 kcal/mol (11465.6037 without restraints) Performing minimization step: 752. Total energy = 11453.3808 kcal/mol (11447.5882 without restraints) Performing minimization step: 753. Total energy = 11435.4019 kcal/mol (11429.6154 without restraints) Performing minimization step: 754. Total energy = 11417.4663 kcal/mol (11411.6859 without restraints) Performing minimization step: 755. Total energy = 11399.5725 kcal/mol (11393.7982 without restraints) Performing minimization step: 756. Total energy = 11381.7210 kcal/mol (11375.9528 without restraints) Performing minimization step: 757. Total energy = 11363.9114 kcal/mol (11358.1491 without restraints) Performing minimization step: 758. Total energy = 11346.1436 kcal/mol (11340.3873 without restraints) Performing minimization step: 759. Total energy = 11328.4172 kcal/mol (11322.6670 without restraints) Performing minimization step: 760. Total energy = 11310.7324 kcal/mol (11304.9881 without restraints) Performing minimization step: 761. Total energy = 11293.0885 kcal/mol (11287.3502 without restraints) Performing minimization step: 762. Total energy = 11275.4863 kcal/mol (11269.7538 without restraints) Performing minimization step: 763. Total energy = 11257.9252 kcal/mol (11252.1987 without restraints) Performing minimization step: 764. Total energy = 11240.4050 kcal/mol (11234.6844 without restraints) Performing minimization step: 765. Total energy = 11222.9255 kcal/mol (11217.2108 without restraints) Performing minimization step: 766. Total energy = 11205.4861 kcal/mol (11199.7772 without restraints) Performing minimization step: 767. Total energy = 11188.0875 kcal/mol (11182.3846 without restraints) Performing minimization step: 768. Total energy = 11170.7289 kcal/mol (11165.0317 without restraints) Performing minimization step: 769. Total energy = 11153.4106 kcal/mol (11147.7192 without restraints) Performing minimization step: 770. Total energy = 11136.1322 kcal/mol (11130.4467 without restraints) Performing minimization step: 771. Total energy = 11118.8933 kcal/mol (11113.2134 without restraints) Performing minimization step: 772. Total energy = 11101.6947 kcal/mol (11096.0207 without restraints) Performing minimization step: 773. Total energy = 11084.5354 kcal/mol (11078.8672 without restraints) Performing minimization step: 774. Total energy = 11067.4152 kcal/mol (11061.7528 without restraints) Performing minimization step: 775. Total energy = 11050.3343 kcal/mol (11044.6776 without restraints) Performing minimization step: 776. Total energy = 11033.2924 kcal/mol (11027.6414 without restraints) Performing minimization step: 777. Total energy = 11016.2892 kcal/mol (11010.6437 without restraints) Performing minimization step: 778. Total energy = 10999.3248 kcal/mol (10993.6853 without restraints) Performing minimization step: 779. Total energy = 10982.3990 kcal/mol (10976.7650 without restraints) Performing minimization step: 780. Total energy = 10965.5118 kcal/mol (10959.8836 without restraints) Performing minimization step: 781. Total energy = 10948.6633 kcal/mol (10943.0406 without restraints) Performing minimization step: 782. Total energy = 10931.8532 kcal/mol (10926.2362 without restraints) Performing minimization step: 783. Total energy = 10915.0807 kcal/mol (10909.4693 without restraints) Performing minimization step: 784. Total energy = 10898.3462 kcal/mol (10892.7404 without restraints) Performing minimization step: 785. Total energy = 10881.6494 kcal/mol (10876.0492 without restraints) Performing minimization step: 786. Total energy = 10864.9903 kcal/mol (10859.3956 without restraints) Performing minimization step: 787. Total energy = 10848.3687 kcal/mol (10842.7796 without restraints) Performing minimization step: 788. Total energy = 10831.7845 kcal/mol (10826.2009 without restraints) Performing minimization step: 789. Total energy = 10815.2375 kcal/mol (10809.6595 without restraints) Performing minimization step: 790. Total energy = 10798.7280 kcal/mol (10793.1554 without restraints) Performing minimization step: 791. Total energy = 10782.2548 kcal/mol (10776.6876 without restraints) Performing minimization step: 792. Total energy = 10765.8188 kcal/mol (10760.2573 without restraints) Performing minimization step: 793. Total energy = 10749.4197 kcal/mol (10743.8636 without restraints) Performing minimization step: 794. Total energy = 10733.0573 kcal/mol (10727.5067 without restraints) Performing minimization step: 795. Total energy = 10716.7314 kcal/mol (10711.1863 without restraints) Performing minimization step: 796. Total energy = 10700.4420 kcal/mol (10694.9024 without restraints) Performing minimization step: 797. Total energy = 10684.1888 kcal/mol (10678.6546 without restraints) Performing minimization step: 798. Total energy = 10667.9719 kcal/mol (10662.4431 without restraints) Performing minimization step: 799. Total energy = 10651.7911 kcal/mol (10646.2677 without restraints) Performing minimization step: 800. Total energy = 10635.6462 kcal/mol (10630.1282 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 10619.5372 kcal/mol (10614.0245 without restraints) Performing minimization step: 802. Total energy = 10603.4641 kcal/mol (10597.9568 without restraints) Performing minimization step: 803. Total energy = 10587.4264 kcal/mol (10581.9245 without restraints) Performing minimization step: 804. Total energy = 10571.4245 kcal/mol (10565.9279 without restraints) Performing minimization step: 805. Total energy = 10555.4581 kcal/mol (10549.9669 without restraints) Performing minimization step: 806. Total energy = 10539.5266 kcal/mol (10534.0407 without restraints) Performing minimization step: 807. Total energy = 10523.6301 kcal/mol (10518.1494 without restraints) Performing minimization step: 808. Total energy = 10507.7688 kcal/mol (10502.2934 without restraints) Performing minimization step: 809. Total energy = 10491.9424 kcal/mol (10486.4723 without restraints) Performing minimization step: 810. Total energy = 10476.1509 kcal/mol (10470.6861 without restraints) Performing minimization step: 811. Total energy = 10460.3941 kcal/mol (10454.9346 without restraints) Performing minimization step: 812. Total energy = 10444.6719 kcal/mol (10439.2177 without restraints) Performing minimization step: 813. Total energy = 10428.9844 kcal/mol (10423.5353 without restraints) Performing minimization step: 814. Total energy = 10413.3312 kcal/mol (10407.8874 without restraints) Performing minimization step: 815. Total energy = 10397.7124 kcal/mol (10392.2740 without restraints) Performing minimization step: 816. Total energy = 10382.1279 kcal/mol (10376.6945 without restraints) Performing minimization step: 817. Total energy = 10366.5777 kcal/mol (10361.1496 without restraints) Performing minimization step: 818. Total energy = 10351.0613 kcal/mol (10345.6383 without restraints) Performing minimization step: 819. Total energy = 10335.5789 kcal/mol (10330.1611 without restraints) Performing minimization step: 820. Total energy = 10320.1304 kcal/mol (10314.7176 without restraints) Performing minimization step: 821. Total energy = 10304.7153 kcal/mol (10299.3077 without restraints) Performing minimization step: 822. Total energy = 10289.3337 kcal/mol (10283.9312 without restraints) Performing minimization step: 823. Total energy = 10273.9857 kcal/mol (10268.5884 without restraints) Performing minimization step: 824. Total energy = 10258.6711 kcal/mol (10253.2788 without restraints) Performing minimization step: 825. Total energy = 10243.3900 kcal/mol (10238.0029 without restraints) Performing minimization step: 826. Total energy = 10228.1423 kcal/mol (10222.7603 without restraints) Performing minimization step: 827. Total energy = 10212.9274 kcal/mol (10207.5505 without restraints) Performing minimization step: 828. Total energy = 10197.7456 kcal/mol (10192.3738 without restraints) Performing minimization step: 829. Total energy = 10182.5968 kcal/mol (10177.2300 without restraints) Performing minimization step: 830. Total energy = 10167.4808 kcal/mol (10162.1190 without restraints) Performing minimization step: 831. Total energy = 10152.3977 kcal/mol (10147.0412 without restraints) Performing minimization step: 832. Total energy = 10137.3473 kcal/mol (10131.9956 without restraints) Performing minimization step: 833. Total energy = 10122.3293 kcal/mol (10116.9827 without restraints) Performing minimization step: 834. Total energy = 10107.3439 kcal/mol (10102.0022 without restraints) Performing minimization step: 835. Total energy = 10092.3908 kcal/mol (10087.0542 without restraints) Performing minimization step: 836. Total energy = 10077.4701 kcal/mol (10072.1384 without restraints) Performing minimization step: 837. Total energy = 10062.5814 kcal/mol (10057.2546 without restraints) Performing minimization step: 838. Total energy = 10047.7253 kcal/mol (10042.4036 without restraints) Performing minimization step: 839. Total energy = 10032.9010 kcal/mol (10027.5843 without restraints) Performing minimization step: 840. Total energy = 10018.1086 kcal/mol (10012.7968 without restraints) Performing minimization step: 841. Total energy = 10003.3482 kcal/mol (9998.0414 without restraints) Performing minimization step: 842. Total energy = 9988.6195 kcal/mol (9983.3176 without restraints) Performing minimization step: 843. Total energy = 9973.9229 kcal/mol (9968.6261 without restraints) Performing minimization step: 844. Total energy = 9959.2573 kcal/mol (9953.9652 without restraints) Performing minimization step: 845. Total energy = 9944.6235 kcal/mol (9939.3363 without restraints) Performing minimization step: 846. Total energy = 9930.0211 kcal/mol (9924.7389 without restraints) Performing minimization step: 847. Total energy = 9915.4502 kcal/mol (9910.1728 without restraints) Performing minimization step: 848. Total energy = 9900.9107 kcal/mol (9895.6382 without restraints) Performing minimization step: 849. Total energy = 9886.4021 kcal/mol (9881.1344 without restraints) Performing minimization step: 850. Total energy = 9871.9247 kcal/mol (9866.6619 without restraints) Performing minimization step: 851. Total energy = 9857.4784 kcal/mol (9852.2204 without restraints) Performing minimization step: 852. Total energy = 9843.0631 kcal/mol (9837.8099 without restraints) Performing minimization step: 853. Total energy = 9828.6786 kcal/mol (9823.4303 without restraints) Performing minimization step: 854. Total energy = 9814.3251 kcal/mol (9809.0816 without restraints) Performing minimization step: 855. Total energy = 9800.0027 kcal/mol (9794.7640 without restraints) Performing minimization step: 856. Total energy = 9785.7104 kcal/mol (9780.4765 without restraints) Performing minimization step: 857. Total energy = 9771.4486 kcal/mol (9766.2196 without restraints) Performing minimization step: 858. Total energy = 9757.2175 kcal/mol (9751.9932 without restraints) Performing minimization step: 859. Total energy = 9743.0167 kcal/mol (9737.7971 without restraints) Performing minimization step: 860. Total energy = 9728.8462 kcal/mol (9723.6314 without restraints) Performing minimization step: 861. Total energy = 9714.7060 kcal/mol (9709.4959 without restraints) Performing minimization step: 862. Total energy = 9700.5959 kcal/mol (9695.3906 without restraints) Performing minimization step: 863. Total energy = 9686.5165 kcal/mol (9681.3159 without restraints) Performing minimization step: 864. Total energy = 9672.4665 kcal/mol (9667.2705 without restraints) Performing minimization step: 865. Total energy = 9658.4465 kcal/mol (9653.2554 without restraints) Performing minimization step: 866. Total energy = 9644.4563 kcal/mol (9639.2699 without restraints) Performing minimization step: 867. Total energy = 9630.4961 kcal/mol (9625.3143 without restraints) Performing minimization step: 868. Total energy = 9616.5656 kcal/mol (9611.3885 without restraints) Performing minimization step: 869. Total energy = 9602.6647 kcal/mol (9597.4923 without restraints) Performing minimization step: 870. Total energy = 9588.7934 kcal/mol (9583.6256 without restraints) Performing minimization step: 871. Total energy = 9574.9517 kcal/mol (9569.7886 without restraints) Performing minimization step: 872. Total energy = 9561.1393 kcal/mol (9555.9809 without restraints) Performing minimization step: 873. Total energy = 9547.3565 kcal/mol (9542.2026 without restraints) Performing minimization step: 874. Total energy = 9533.6030 kcal/mol (9528.4538 without restraints) Performing minimization step: 875. Total energy = 9519.8786 kcal/mol (9514.7340 without restraints) Performing minimization step: 876. Total energy = 9506.1831 kcal/mol (9501.0432 without restraints) Performing minimization step: 877. Total energy = 9492.5172 kcal/mol (9487.3819 without restraints) Performing minimization step: 878. Total energy = 9478.8801 kcal/mol (9473.7493 without restraints) Performing minimization step: 879. Total energy = 9465.2719 kcal/mol (9460.1457 without restraints) Performing minimization step: 880. Total energy = 9451.6926 kcal/mol (9446.5710 without restraints) Performing minimization step: 881. Total energy = 9438.1421 kcal/mol (9433.0251 without restraints) Performing minimization step: 882. Total energy = 9424.6202 kcal/mol (9419.5077 without restraints) Performing minimization step: 883. Total energy = 9411.1270 kcal/mol (9406.0191 without restraints) Performing minimization step: 884. Total energy = 9397.6629 kcal/mol (9392.5596 without restraints) Performing minimization step: 885. Total energy = 9384.2272 kcal/mol (9379.1283 without restraints) Performing minimization step: 886. Total energy = 9370.8196 kcal/mol (9365.7253 without restraints) Performing minimization step: 887. Total energy = 9357.4405 kcal/mol (9352.3507 without restraints) Performing minimization step: 888. Total energy = 9344.0899 kcal/mol (9339.0046 without restraints) Performing minimization step: 889. Total energy = 9330.7675 kcal/mol (9325.6868 without restraints) Performing minimization step: 890. Total energy = 9317.4738 kcal/mol (9312.3975 without restraints) Performing minimization step: 891. Total energy = 9304.2076 kcal/mol (9299.1358 without restraints) Performing minimization step: 892. Total energy = 9290.9694 kcal/mol (9285.9021 without restraints) Performing minimization step: 893. Total energy = 9277.7593 kcal/mol (9272.6964 without restraints) Performing minimization step: 894. Total energy = 9264.5770 kcal/mol (9259.5186 without restraints) Performing minimization step: 895. Total energy = 9251.4225 kcal/mol (9246.3685 without restraints) Performing minimization step: 896. Total energy = 9238.2959 kcal/mol (9233.2464 without restraints) Performing minimization step: 897. Total energy = 9225.1971 kcal/mol (9220.1519 without restraints) Performing minimization step: 898. Total energy = 9212.1260 kcal/mol (9207.0854 without restraints) Performing minimization step: 899. Total energy = 9199.0824 kcal/mol (9194.0461 without restraints) Performing minimization step: 900. Total energy = 9186.0664 kcal/mol (9181.0345 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 9173.0776 kcal/mol (9168.0500 without restraints) Performing minimization step: 902. Total energy = 9160.1164 kcal/mol (9155.0933 without restraints) Performing minimization step: 903. Total energy = 9147.1826 kcal/mol (9142.1639 without restraints) Performing minimization step: 904. Total energy = 9134.2759 kcal/mol (9129.2616 without restraints) Performing minimization step: 905. Total energy = 9121.3966 kcal/mol (9116.3865 without restraints) Performing minimization step: 906. Total energy = 9108.5449 kcal/mol (9103.5393 without restraints) Performing minimization step: 907. Total energy = 9095.7199 kcal/mol (9090.7186 without restraints) Performing minimization step: 908. Total energy = 9082.9223 kcal/mol (9077.9253 without restraints) Performing minimization step: 909. Total energy = 9070.1512 kcal/mol (9065.1585 without restraints) Performing minimization step: 910. Total energy = 9057.4070 kcal/mol (9052.4186 without restraints) Performing minimization step: 911. Total energy = 9044.6898 kcal/mol (9039.7058 without restraints) Performing minimization step: 912. Total energy = 9031.9992 kcal/mol (9027.0195 without restraints) Performing minimization step: 913. Total energy = 9019.3358 kcal/mol (9014.3605 without restraints) Performing minimization step: 914. Total energy = 9006.6987 kcal/mol (9001.7276 without restraints) Performing minimization step: 915. Total energy = 8994.0884 kcal/mol (8989.1215 without restraints) Performing minimization step: 916. Total energy = 8981.5044 kcal/mol (8976.5417 without restraints) Performing minimization step: 917. Total energy = 8968.9474 kcal/mol (8963.9891 without restraints) Performing minimization step: 918. Total energy = 8956.4163 kcal/mol (8951.4622 without restraints) Performing minimization step: 919. Total energy = 8943.9116 kcal/mol (8938.9618 without restraints) Performing minimization step: 920. Total energy = 8931.4334 kcal/mol (8926.4878 without restraints) Performing minimization step: 921. Total energy = 8918.9817 kcal/mol (8914.0403 without restraints) Performing minimization step: 922. Total energy = 8906.5563 kcal/mol (8901.6193 without restraints) Performing minimization step: 923. Total energy = 8894.1568 kcal/mol (8889.2239 without restraints) Performing minimization step: 924. Total energy = 8881.7833 kcal/mol (8876.8546 without restraints) Performing minimization step: 925. Total energy = 8869.4361 kcal/mol (8864.5115 without restraints) Performing minimization step: 926. Total energy = 8857.1148 kcal/mol (8852.1944 without restraints) Performing minimization step: 927. Total energy = 8844.8192 kcal/mol (8839.9030 without restraints) Performing minimization step: 928. Total energy = 8832.5494 kcal/mol (8827.6374 without restraints) Performing minimization step: 929. Total energy = 8820.3054 kcal/mol (8815.3975 without restraints) Performing minimization step: 930. Total energy = 8808.0871 kcal/mol (8803.1834 without restraints) Performing minimization step: 931. Total energy = 8795.8945 kcal/mol (8790.9950 without restraints) Performing minimization step: 932. Total energy = 8783.7276 kcal/mol (8778.8321 without restraints) Performing minimization step: 933. Total energy = 8771.5861 kcal/mol (8766.6948 without restraints) Performing minimization step: 934. Total energy = 8759.4702 kcal/mol (8754.5830 without restraints) Performing minimization step: 935. Total energy = 8747.3798 kcal/mol (8742.4968 without restraints) Performing minimization step: 936. Total energy = 8735.3144 kcal/mol (8730.4355 without restraints) Performing minimization step: 937. Total energy = 8723.2744 kcal/mol (8718.3995 without restraints) Performing minimization step: 938. Total energy = 8711.2599 kcal/mol (8706.3891 without restraints) Performing minimization step: 939. Total energy = 8699.2707 kcal/mol (8694.4040 without restraints) Performing minimization step: 940. Total energy = 8687.3068 kcal/mol (8682.4442 without restraints) Performing minimization step: 941. Total energy = 8675.3678 kcal/mol (8670.5092 without restraints) Performing minimization step: 942. Total energy = 8663.4543 kcal/mol (8658.5997 without restraints) Performing minimization step: 943. Total energy = 8651.5653 kcal/mol (8646.7149 without restraints) Performing minimization step: 944. Total energy = 8639.7016 kcal/mol (8634.8552 without restraints) Performing minimization step: 945. Total energy = 8627.8626 kcal/mol (8623.0202 without restraints) Performing minimization step: 946. Total energy = 8616.0485 kcal/mol (8611.2101 without restraints) Performing minimization step: 947. Total energy = 8604.2588 kcal/mol (8599.4244 without restraints) Performing minimization step: 948. Total energy = 8592.4940 kcal/mol (8587.6636 without restraints) Performing minimization step: 949. Total energy = 8580.7538 kcal/mol (8575.9275 without restraints) Performing minimization step: 950. Total energy = 8569.0382 kcal/mol (8564.2158 without restraints) Performing minimization step: 951. Total energy = 8557.3470 kcal/mol (8552.5286 without restraints) Performing minimization step: 952. Total energy = 8545.6806 kcal/mol (8540.8662 without restraints) Performing minimization step: 953. Total energy = 8534.0386 kcal/mol (8529.2282 without restraints) Performing minimization step: 954. Total energy = 8522.4211 kcal/mol (8517.6146 without restraints) Performing minimization step: 955. Total energy = 8510.8278 kcal/mol (8506.0253 without restraints) Performing minimization step: 956. Total energy = 8499.2591 kcal/mol (8494.4605 without restraints) Performing minimization step: 957. Total energy = 8487.7144 kcal/mol (8482.9197 without restraints) Performing minimization step: 958. Total energy = 8476.1939 kcal/mol (8471.4032 without restraints) Performing minimization step: 959. Total energy = 8464.6975 kcal/mol (8459.9107 without restraints) Performing minimization step: 960. Total energy = 8453.2252 kcal/mol (8448.4423 without restraints) Performing minimization step: 961. Total energy = 8441.7769 kcal/mol (8436.9979 without restraints) Performing minimization step: 962. Total energy = 8430.3526 kcal/mol (8425.5775 without restraints) Performing minimization step: 963. Total energy = 8418.9526 kcal/mol (8414.1814 without restraints) Performing minimization step: 964. Total energy = 8407.5761 kcal/mol (8402.8087 without restraints) Performing minimization step: 965. Total energy = 8396.2234 kcal/mol (8391.4599 without restraints) Performing minimization step: 966. Total energy = 8384.8943 kcal/mol (8380.1347 without restraints) Performing minimization step: 967. Total energy = 8373.5894 kcal/mol (8368.8336 without restraints) Performing minimization step: 968. Total energy = 8362.3078 kcal/mol (8357.5558 without restraints) Performing minimization step: 969. Total energy = 8351.0501 kcal/mol (8346.3020 without restraints) Performing minimization step: 970. Total energy = 8339.8157 kcal/mol (8335.0714 without restraints) Performing minimization step: 971. Total energy = 8328.6048 kcal/mol (8323.8644 without restraints) Performing minimization step: 972. Total energy = 8317.4175 kcal/mol (8312.6808 without restraints) Performing minimization step: 973. Total energy = 8306.2534 kcal/mol (8301.5206 without restraints) Performing minimization step: 974. Total energy = 8295.1126 kcal/mol (8290.3835 without restraints) Performing minimization step: 975. Total energy = 8283.9952 kcal/mol (8279.2700 without restraints) Performing minimization step: 976. Total energy = 8272.9012 kcal/mol (8268.1797 without restraints) Performing minimization step: 977. Total energy = 8261.8304 kcal/mol (8257.1128 without restraints) Performing minimization step: 978. Total energy = 8250.7827 kcal/mol (8246.0688 without restraints) Performing minimization step: 979. Total energy = 8239.7581 kcal/mol (8235.0479 without restraints) Performing minimization step: 980. Total energy = 8228.7568 kcal/mol (8224.0503 without restraints) Performing minimization step: 981. Total energy = 8217.7783 kcal/mol (8213.0756 without restraints) Performing minimization step: 982. Total energy = 8206.8226 kcal/mol (8202.1236 without restraints) Performing minimization step: 983. Total energy = 8195.8897 kcal/mol (8191.1945 without restraints) Performing minimization step: 984. Total energy = 8184.9798 kcal/mol (8180.2882 without restraints) Performing minimization step: 985. Total energy = 8174.0926 kcal/mol (8169.4047 without restraints) Performing minimization step: 986. Total energy = 8163.2286 kcal/mol (8158.5445 without restraints) Performing minimization step: 987. Total energy = 8152.3869 kcal/mol (8147.7065 without restraints) Performing minimization step: 988. Total energy = 8141.5679 kcal/mol (8136.8911 without restraints) Performing minimization step: 989. Total energy = 8130.7716 kcal/mol (8126.0985 without restraints) Performing minimization step: 990. Total energy = 8119.9977 kcal/mol (8115.3283 without restraints) Performing minimization step: 991. Total energy = 8109.2463 kcal/mol (8104.5805 without restraints) Performing minimization step: 992. Total energy = 8098.5175 kcal/mol (8093.8554 without restraints) Performing minimization step: 993. Total energy = 8087.8110 kcal/mol (8083.1526 without restraints) Performing minimization step: 994. Total energy = 8077.1268 kcal/mol (8072.4720 without restraints) Performing minimization step: 995. Total energy = 8066.4652 kcal/mol (8061.8139 without restraints) Performing minimization step: 996. Total energy = 8055.8255 kcal/mol (8051.1779 without restraints) Performing minimization step: 997. Total energy = 8045.2084 kcal/mol (8040.5644 without restraints) Performing minimization step: 998. Total energy = 8034.6136 kcal/mol (8029.9732 without restraints) Performing minimization step: 999. Total energy = 8024.0406 kcal/mol (8019.4038 without restraints) Performing minimization step: 1000. Total energy = 8013.4894 kcal/mol (8008.8563 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 8002.9603 kcal/mol (7998.3303 without restraints) Performing minimization step: 1002. Total energy = 7992.4528 kcal/mol (7987.8268 without restraints) Performing minimization step: 1003. Total energy = 7981.9676 kcal/mol (7977.3451 without restraints) Performing minimization step: 1004. Total energy = 7971.5046 kcal/mol (7966.8857 without restraints) Performing minimization step: 1005. Total energy = 7961.0633 kcal/mol (7956.4480 without restraints) Performing minimization step: 1006. Total energy = 7950.6436 kcal/mol (7946.0317 without restraints) Performing minimization step: 1007. Total energy = 7940.2457 kcal/mol (7935.6374 without restraints) Performing minimization step: 1008. Total energy = 7929.8693 kcal/mol (7925.2645 without restraints) Performing minimization step: 1009. Total energy = 7919.5141 kcal/mol (7914.9128 without restraints) Performing minimization step: 1010. Total energy = 7909.1812 kcal/mol (7904.5834 without restraints) Performing minimization step: 1011. Total energy = 7898.8695 kcal/mol (7894.2752 without restraints) Performing minimization step: 1012. Total energy = 7888.5791 kcal/mol (7883.9884 without restraints) Performing minimization step: 1013. Total energy = 7878.3109 kcal/mol (7873.7237 without restraints) Performing minimization step: 1014. Total energy = 7868.0636 kcal/mol (7863.4798 without restraints) Performing minimization step: 1015. Total energy = 7857.8376 kcal/mol (7853.2573 without restraints) Performing minimization step: 1016. Total energy = 7847.6329 kcal/mol (7843.0561 without restraints) Performing minimization step: 1017. Total energy = 7837.4493 kcal/mol (7832.8759 without restraints) Performing minimization step: 1018. Total energy = 7827.2871 kcal/mol (7822.7171 without restraints) Performing minimization step: 1019. Total energy = 7817.1460 kcal/mol (7812.5795 without restraints) Performing minimization step: 1020. Total energy = 7807.0260 kcal/mol (7802.4629 without restraints) Performing minimization step: 1021. Total energy = 7796.9271 kcal/mol (7792.3675 without restraints) Performing minimization step: 1022. Total energy = 7786.8490 kcal/mol (7782.2926 without restraints) Performing minimization step: 1023. Total energy = 7776.7920 kcal/mol (7772.2391 without restraints) Performing minimization step: 1024. Total energy = 7766.7560 kcal/mol (7762.2065 without restraints) Performing minimization step: 1025. Total energy = 7756.7406 kcal/mol (7752.1946 without restraints) Performing minimization step: 1026. Total energy = 7746.7463 kcal/mol (7742.2036 without restraints) Performing minimization step: 1027. Total energy = 7736.7729 kcal/mol (7732.2336 without restraints) Performing minimization step: 1028. Total energy = 7726.8202 kcal/mol (7722.2843 without restraints) Performing minimization step: 1029. Total energy = 7716.8880 kcal/mol (7712.3554 without restraints) Performing minimization step: 1030. Total energy = 7706.9764 kcal/mol (7702.4471 without restraints) Performing minimization step: 1031. Total energy = 7697.0857 kcal/mol (7692.5599 without restraints) Performing minimization step: 1032. Total energy = 7687.2156 kcal/mol (7682.6931 without restraints) Performing minimization step: 1033. Total energy = 7677.3659 kcal/mol (7672.8467 without restraints) Performing minimization step: 1034. Total energy = 7667.5364 kcal/mol (7663.0203 without restraints) Performing minimization step: 1035. Total energy = 7657.7278 kcal/mol (7653.2152 without restraints) Performing minimization step: 1036. Total energy = 7647.9394 kcal/mol (7643.4301 without restraints) Performing minimization step: 1037. Total energy = 7638.1717 kcal/mol (7633.6656 without restraints) Performing minimization step: 1038. Total energy = 7628.4241 kcal/mol (7623.9213 without restraints) Performing minimization step: 1039. Total energy = 7618.6964 kcal/mol (7614.1968 without restraints) Performing minimization step: 1040. Total energy = 7608.9889 kcal/mol (7604.4927 without restraints) Performing minimization step: 1041. Total energy = 7599.3019 kcal/mol (7594.8090 without restraints) Performing minimization step: 1042. Total energy = 7589.6347 kcal/mol (7585.1451 without restraints) Performing minimization step: 1043. Total energy = 7579.9874 kcal/mol (7575.5010 without restraints) Performing minimization step: 1044. Total energy = 7570.3606 kcal/mol (7565.8775 without restraints) Performing minimization step: 1045. Total energy = 7560.7536 kcal/mol (7556.2736 without restraints) Performing minimization step: 1046. Total energy = 7551.1664 kcal/mol (7546.6897 without restraints) Performing minimization step: 1047. Total energy = 7541.5989 kcal/mol (7537.1253 without restraints) Performing minimization step: 1048. Total energy = 7532.0514 kcal/mol (7527.5811 without restraints) Performing minimization step: 1049. Total energy = 7522.5238 kcal/mol (7518.0567 without restraints) Performing minimization step: 1050. Total energy = 7513.0161 kcal/mol (7508.5522 without restraints) Performing minimization step: 1051. Total energy = 7503.5279 kcal/mol (7499.0673 without restraints) Performing minimization step: 1052. Total energy = 7494.0594 kcal/mol (7489.6019 without restraints) Performing minimization step: 1053. Total energy = 7484.6108 kcal/mol (7480.1566 without restraints) Performing minimization step: 1054. Total energy = 7475.1816 kcal/mol (7470.7304 without restraints) Performing minimization step: 1055. Total energy = 7465.7718 kcal/mol (7461.3238 without restraints) Performing minimization step: 1056. Total energy = 7456.3816 kcal/mol (7451.9367 without restraints) Performing minimization step: 1057. Total energy = 7447.0110 kcal/mol (7442.5693 without restraints) Performing minimization step: 1058. Total energy = 7437.6594 kcal/mol (7433.2208 without restraints) Performing minimization step: 1059. Total energy = 7428.3273 kcal/mol (7423.8918 without restraints) Performing minimization step: 1060. Total energy = 7419.0143 kcal/mol (7414.5820 without restraints) Performing minimization step: 1061. Total energy = 7409.7209 kcal/mol (7405.2916 without restraints) Performing minimization step: 1062. Total energy = 7400.4466 kcal/mol (7396.0205 without restraints) Performing minimization step: 1063. Total energy = 7391.1915 kcal/mol (7386.7685 without restraints) Performing minimization step: 1064. Total energy = 7381.9554 kcal/mol (7377.5354 without restraints) Performing minimization step: 1065. Total energy = 7372.7387 kcal/mol (7368.3219 without restraints) Performing minimization step: 1066. Total energy = 7363.5410 kcal/mol (7359.1272 without restraints) Performing minimization step: 1067. Total energy = 7354.3623 kcal/mol (7349.9515 without restraints) Performing minimization step: 1068. Total energy = 7345.2025 kcal/mol (7340.7948 without restraints) Performing minimization step: 1069. Total energy = 7336.0616 kcal/mol (7331.6570 without restraints) Performing minimization step: 1070. Total energy = 7326.9396 kcal/mol (7322.5380 without restraints) Performing minimization step: 1071. Total energy = 7317.8365 kcal/mol (7313.4379 without restraints) Performing minimization step: 1072. Total energy = 7308.7522 kcal/mol (7304.3566 without restraints) Performing minimization step: 1073. Total energy = 7299.6861 kcal/mol (7295.2936 without restraints) Performing minimization step: 1074. Total energy = 7290.6394 kcal/mol (7286.2499 without restraints) Performing minimization step: 1075. Total energy = 7281.6118 kcal/mol (7277.2252 without restraints) Performing minimization step: 1076. Total energy = 7272.6024 kcal/mol (7268.2189 without restraints) Performing minimization step: 1077. Total energy = 7263.6114 kcal/mol (7259.2309 without restraints) Performing minimization step: 1078. Total energy = 7254.6390 kcal/mol (7250.2614 without restraints) Performing minimization step: 1079. Total energy = 7245.6851 kcal/mol (7241.3105 without restraints) Performing minimization step: 1080. Total energy = 7236.7496 kcal/mol (7232.3780 without restraints) Performing minimization step: 1081. Total energy = 7227.8323 kcal/mol (7223.4636 without restraints) Performing minimization step: 1082. Total energy = 7218.9337 kcal/mol (7214.5681 without restraints) Performing minimization step: 1083. Total energy = 7210.0537 kcal/mol (7205.6909 without restraints) Performing minimization step: 1084. Total energy = 7201.1917 kcal/mol (7196.8319 without restraints) Performing minimization step: 1085. Total energy = 7192.3481 kcal/mol (7187.9912 without restraints) Performing minimization step: 1086. Total energy = 7183.5227 kcal/mol (7179.1688 without restraints) Performing minimization step: 1087. Total energy = 7174.7154 kcal/mol (7170.3644 without restraints) Performing minimization step: 1088. Total energy = 7165.9262 kcal/mol (7161.5780 without restraints) Performing minimization step: 1089. Total energy = 7157.1551 kcal/mol (7152.8098 without restraints) Performing minimization step: 1090. Total energy = 7148.4019 kcal/mol (7144.0596 without restraints) Performing minimization step: 1091. Total energy = 7139.6670 kcal/mol (7135.3275 without restraints) Performing minimization step: 1092. Total energy = 7130.9499 kcal/mol (7126.6133 without restraints) Performing minimization step: 1093. Total energy = 7122.2508 kcal/mol (7117.9171 without restraints) Performing minimization step: 1094. Total energy = 7113.5693 kcal/mol (7109.2384 without restraints) Performing minimization step: 1095. Total energy = 7104.9060 kcal/mol (7100.5780 without restraints) Performing minimization step: 1096. Total energy = 7096.2600 kcal/mol (7091.9346 without restraints) Performing minimization step: 1097. Total energy = 7087.6323 kcal/mol (7083.3099 without restraints) Performing minimization step: 1098. Total energy = 7079.0219 kcal/mol (7074.7024 without restraints) Performing minimization step: 1099. Total energy = 7070.4294 kcal/mol (7066.1127 without restraints) Performing minimization step: 1100. Total energy = 7061.8543 kcal/mol (7057.5404 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 7053.2970 kcal/mol (7048.9857 without restraints) Performing minimization step: 1102. Total energy = 7044.7570 kcal/mol (7040.4486 without restraints) Performing minimization step: 1103. Total energy = 7036.2347 kcal/mol (7031.9292 without restraints) Performing minimization step: 1104. Total energy = 7027.7300 kcal/mol (7023.4273 without restraints) Performing minimization step: 1105. Total energy = 7019.2428 kcal/mol (7014.9428 without restraints) Performing minimization step: 1106. Total energy = 7010.7730 kcal/mol (7006.4759 without restraints) Performing minimization step: 1107. Total energy = 7002.3202 kcal/mol (6998.0258 without restraints) Performing minimization step: 1108. Total energy = 6993.8851 kcal/mol (6989.5934 without restraints) Performing minimization step: 1109. Total energy = 6985.4674 kcal/mol (6981.1785 without restraints) Performing minimization step: 1110. Total energy = 6977.0668 kcal/mol (6972.7806 without restraints) Performing minimization step: 1111. Total energy = 6968.6832 kcal/mol (6964.3998 without restraints) Performing minimization step: 1112. Total energy = 6960.3169 kcal/mol (6956.0362 without restraints) Performing minimization step: 1113. Total energy = 6951.9678 kcal/mol (6947.6898 without restraints) Performing minimization step: 1114. Total energy = 6943.6358 kcal/mol (6939.3604 without restraints) Performing minimization step: 1115. Total energy = 6935.3207 kcal/mol (6931.0481 without restraints) Performing minimization step: 1116. Total energy = 6927.0227 kcal/mol (6922.7528 without restraints) Performing minimization step: 1117. Total energy = 6918.7417 kcal/mol (6914.4745 without restraints) Performing minimization step: 1118. Total energy = 6910.4778 kcal/mol (6906.2133 without restraints) Performing minimization step: 1119. Total energy = 6902.2308 kcal/mol (6897.9689 without restraints) Performing minimization step: 1120. Total energy = 6894.0004 kcal/mol (6889.7412 without restraints) Performing minimization step: 1121. Total energy = 6885.7868 kcal/mol (6881.5303 without restraints) Performing minimization step: 1122. Total energy = 6877.5903 kcal/mol (6873.3364 without restraints) Performing minimization step: 1123. Total energy = 6869.4102 kcal/mol (6865.1590 without restraints) Performing minimization step: 1124. Total energy = 6861.2468 kcal/mol (6856.9982 without restraints) Performing minimization step: 1125. Total energy = 6853.1001 kcal/mol (6848.8541 without restraints) Performing minimization step: 1126. Total energy = 6844.9699 kcal/mol (6840.7266 without restraints) Performing minimization step: 1127. Total energy = 6836.8565 kcal/mol (6832.6159 without restraints) Performing minimization step: 1128. Total energy = 6828.7596 kcal/mol (6824.5215 without restraints) Performing minimization step: 1129. Total energy = 6820.6791 kcal/mol (6816.4436 without restraints) Performing minimization step: 1130. Total energy = 6812.6151 kcal/mol (6808.3822 without restraints) Performing minimization step: 1131. Total energy = 6804.5673 kcal/mol (6800.3370 without restraints) Performing minimization step: 1132. Total energy = 6796.5360 kcal/mol (6792.3082 without restraints) Performing minimization step: 1133. Total energy = 6788.5215 kcal/mol (6784.2963 without restraints) Performing minimization step: 1134. Total energy = 6780.5234 kcal/mol (6776.3008 without restraints) Performing minimization step: 1135. Total energy = 6772.5407 kcal/mol (6768.3206 without restraints) Performing minimization step: 1136. Total energy = 6764.5747 kcal/mol (6760.3572 without restraints) Performing minimization step: 1137. Total energy = 6756.6246 kcal/mol (6752.4098 without restraints) Performing minimization step: 1138. Total energy = 6748.6911 kcal/mol (6744.4786 without restraints) Performing minimization step: 1139. Total energy = 6740.7735 kcal/mol (6736.5636 without restraints) Performing minimization step: 1140. Total energy = 6732.8720 kcal/mol (6728.6647 without restraints) Performing minimization step: 1141. Total energy = 6724.9867 kcal/mol (6720.7818 without restraints) Performing minimization step: 1142. Total energy = 6717.1175 kcal/mol (6712.9152 without restraints) Performing minimization step: 1143. Total energy = 6709.2643 kcal/mol (6705.0644 without restraints) Performing minimization step: 1144. Total energy = 6701.4269 kcal/mol (6697.2296 without restraints) Performing minimization step: 1145. Total energy = 6693.6054 kcal/mol (6689.4105 without restraints) Performing minimization step: 1146. Total energy = 6685.7989 kcal/mol (6681.6066 without restraints) Performing minimization step: 1147. Total energy = 6678.0091 kcal/mol (6673.8192 without restraints) Performing minimization step: 1148. Total energy = 6670.2350 kcal/mol (6666.0475 without restraints) Performing minimization step: 1149. Total energy = 6662.4766 kcal/mol (6658.2916 without restraints) Performing minimization step: 1150. Total energy = 6654.7340 kcal/mol (6650.5515 without restraints) Performing minimization step: 1151. Total energy = 6647.0071 kcal/mol (6642.8270 without restraints) Performing minimization step: 1152. Total energy = 6639.2958 kcal/mol (6635.1182 without restraints) Performing minimization step: 1153. Total energy = 6631.6002 kcal/mol (6627.4250 without restraints) Performing minimization step: 1154. Total energy = 6623.9201 kcal/mol (6619.7473 without restraints) Performing minimization step: 1155. Total energy = 6616.2555 kcal/mol (6612.0851 without restraints) Performing minimization step: 1156. Total energy = 6608.6064 kcal/mol (6604.4384 without restraints) Performing minimization step: 1157. Total energy = 6600.9725 kcal/mol (6596.8069 without restraints) Performing minimization step: 1158. Total energy = 6593.3541 kcal/mol (6589.1909 without restraints) Performing minimization step: 1159. Total energy = 6585.7515 kcal/mol (6581.5907 without restraints) Performing minimization step: 1160. Total energy = 6578.1640 kcal/mol (6574.0059 without restraints) Performing minimization step: 1161. Total energy = 6570.5920 kcal/mol (6566.4361 without restraints) Performing minimization step: 1162. Total energy = 6563.0352 kcal/mol (6558.8816 without restraints) Performing minimization step: 1163. Total energy = 6555.4938 kcal/mol (6551.3425 without restraints) Performing minimization step: 1164. Total energy = 6547.9677 kcal/mol (6543.8188 without restraints) Performing minimization step: 1165. Total energy = 6540.4567 kcal/mol (6536.3101 without restraints) Performing minimization step: 1166. Total energy = 6532.9607 kcal/mol (6528.8165 without restraints) Performing minimization step: 1167. Total energy = 6525.4799 kcal/mol (6521.3381 without restraints) Performing minimization step: 1168. Total energy = 6518.0140 kcal/mol (6513.8744 without restraints) Performing minimization step: 1169. Total energy = 6510.5629 kcal/mol (6506.4257 without restraints) Performing minimization step: 1170. Total energy = 6503.1268 kcal/mol (6498.9920 without restraints) Performing minimization step: 1171. Total energy = 6495.7058 kcal/mol (6491.5732 without restraints) Performing minimization step: 1172. Total energy = 6488.2998 kcal/mol (6484.1695 without restraints) Performing minimization step: 1173. Total energy = 6480.9086 kcal/mol (6476.7806 without restraints) Performing minimization step: 1174. Total energy = 6473.5320 kcal/mol (6469.4063 without restraints) Performing minimization step: 1175. Total energy = 6466.1708 kcal/mol (6462.0474 without restraints) Performing minimization step: 1176. Total energy = 6458.8239 kcal/mol (6454.7028 without restraints) Performing minimization step: 1177. Total energy = 6451.4922 kcal/mol (6447.3733 without restraints) Performing minimization step: 1178. Total energy = 6444.1752 kcal/mol (6440.0588 without restraints) Performing minimization step: 1179. Total energy = 6436.8729 kcal/mol (6432.7585 without restraints) Performing minimization step: 1180. Total energy = 6429.5849 kcal/mol (6425.4728 without restraints) Performing minimization step: 1181. Total energy = 6422.3116 kcal/mol (6418.2017 without restraints) Performing minimization step: 1182. Total energy = 6415.0530 kcal/mol (6410.9454 without restraints) Performing minimization step: 1183. Total energy = 6407.8089 kcal/mol (6403.7035 without restraints) Performing minimization step: 1184. Total energy = 6400.5792 kcal/mol (6396.4760 without restraints) Performing minimization step: 1185. Total energy = 6393.3642 kcal/mol (6389.2633 without restraints) Performing minimization step: 1186. Total energy = 6386.1635 kcal/mol (6382.0648 without restraints) Performing minimization step: 1187. Total energy = 6378.9772 kcal/mol (6374.8806 without restraints) Performing minimization step: 1188. Total energy = 6371.8054 kcal/mol (6367.7112 without restraints) Performing minimization step: 1189. Total energy = 6364.6479 kcal/mol (6360.5557 without restraints) Performing minimization step: 1190. Total energy = 6357.5045 kcal/mol (6353.4146 without restraints) Performing minimization step: 1191. Total energy = 6350.3757 kcal/mol (6346.2879 without restraints) Performing minimization step: 1192. Total energy = 6343.2609 kcal/mol (6339.1753 without restraints) Performing minimization step: 1193. Total energy = 6336.1603 kcal/mol (6332.0768 without restraints) Performing minimization step: 1194. Total energy = 6329.0738 kcal/mol (6324.9926 without restraints) Performing minimization step: 1195. Total energy = 6322.0012 kcal/mol (6317.9221 without restraints) Performing minimization step: 1196. Total energy = 6314.9431 kcal/mol (6310.8662 without restraints) Performing minimization step: 1197. Total energy = 6307.8990 kcal/mol (6303.8242 without restraints) Performing minimization step: 1198. Total energy = 6300.8692 kcal/mol (6296.7964 without restraints) Performing minimization step: 1199. Total energy = 6293.8529 kcal/mol (6289.7823 without restraints) Performing minimization step: 1200. Total energy = 6286.8511 kcal/mol (6282.7827 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 6279.8631 kcal/mol (6275.7968 without restraints) Performing minimization step: 1202. Total energy = 6272.8888 kcal/mol (6268.8246 without restraints) Performing minimization step: 1203. Total energy = 6265.9285 kcal/mol (6261.8663 without restraints) Performing minimization step: 1204. Total energy = 6258.9820 kcal/mol (6254.9221 without restraints) Performing minimization step: 1205. Total energy = 6252.0496 kcal/mol (6247.9916 without restraints) Performing minimization step: 1206. Total energy = 6245.1307 kcal/mol (6241.0749 without restraints) Performing minimization step: 1207. Total energy = 6238.2257 kcal/mol (6234.1719 without restraints) Performing minimization step: 1208. Total energy = 6231.3342 kcal/mol (6227.2824 without restraints) Performing minimization step: 1209. Total energy = 6224.4563 kcal/mol (6220.4066 without restraints) Performing minimization step: 1210. Total energy = 6217.5921 kcal/mol (6213.5445 without restraints) Performing minimization step: 1211. Total energy = 6210.7414 kcal/mol (6206.6959 without restraints) Performing minimization step: 1212. Total energy = 6203.9044 kcal/mol (6199.8609 without restraints) Performing minimization step: 1213. Total energy = 6197.0809 kcal/mol (6193.0394 without restraints) Performing minimization step: 1214. Total energy = 6190.2709 kcal/mol (6186.2314 without restraints) Performing minimization step: 1215. Total energy = 6183.4744 kcal/mol (6179.4370 without restraints) Performing minimization step: 1216. Total energy = 6176.6912 kcal/mol (6172.6558 without restraints) Performing minimization step: 1217. Total energy = 6169.9217 kcal/mol (6165.8884 without restraints) Performing minimization step: 1218. Total energy = 6163.1655 kcal/mol (6159.1341 without restraints) Performing minimization step: 1219. Total energy = 6156.4226 kcal/mol (6152.3933 without restraints) Performing minimization step: 1220. Total energy = 6149.6931 kcal/mol (6145.6658 without restraints) Performing minimization step: 1221. Total energy = 6142.9769 kcal/mol (6138.9516 without restraints) Performing minimization step: 1222. Total energy = 6136.2740 kcal/mol (6132.2506 without restraints) Performing minimization step: 1223. Total energy = 6129.5841 kcal/mol (6125.5626 without restraints) Performing minimization step: 1224. Total energy = 6122.9072 kcal/mol (6118.8877 without restraints) Performing minimization step: 1225. Total energy = 6116.2440 kcal/mol (6112.2265 without restraints) Performing minimization step: 1226. Total energy = 6109.5938 kcal/mol (6105.5782 without restraints) Performing minimization step: 1227. Total energy = 6102.9565 kcal/mol (6098.9430 without restraints) Performing minimization step: 1228. Total energy = 6096.3325 kcal/mol (6092.3209 without restraints) Performing minimization step: 1229. Total energy = 6089.7214 kcal/mol (6085.7118 without restraints) Performing minimization step: 1230. Total energy = 6083.1233 kcal/mol (6079.1156 without restraints) Performing minimization step: 1231. Total energy = 6076.5382 kcal/mol (6072.5324 without restraints) Performing minimization step: 1232. Total energy = 6069.9661 kcal/mol (6065.9622 without restraints) Performing minimization step: 1233. Total energy = 6063.4069 kcal/mol (6059.4050 without restraints) Performing minimization step: 1234. Total energy = 6056.8605 kcal/mol (6052.8605 without restraints) Performing minimization step: 1235. Total energy = 6050.3268 kcal/mol (6046.3287 without restraints) Performing minimization step: 1236. Total energy = 6043.8062 kcal/mol (6039.8100 without restraints) Performing minimization step: 1237. Total energy = 6037.2984 kcal/mol (6033.3041 without restraints) Performing minimization step: 1238. Total energy = 6030.8034 kcal/mol (6026.8109 without restraints) Performing minimization step: 1239. Total energy = 6024.3213 kcal/mol (6020.3308 without restraints) Performing minimization step: 1240. Total energy = 6017.8517 kcal/mol (6013.8630 without restraints) Performing minimization step: 1241. Total energy = 6011.3949 kcal/mol (6007.4081 without restraints) Performing minimization step: 1242. Total energy = 6004.9507 kcal/mol (6000.9658 without restraints) Performing minimization step: 1243. Total energy = 5998.5192 kcal/mol (5994.5361 without restraints) Performing minimization step: 1244. Total energy = 5992.1003 kcal/mol (5988.1190 without restraints) Performing minimization step: 1245. Total energy = 5985.6941 kcal/mol (5981.7147 without restraints) Performing minimization step: 1246. Total energy = 5979.3000 kcal/mol (5975.3224 without restraints) Performing minimization step: 1247. Total energy = 5972.9186 kcal/mol (5968.9429 without restraints) Performing minimization step: 1248. Total energy = 5966.5495 kcal/mol (5962.5756 without restraints) Performing minimization step: 1249. Total energy = 5960.1927 kcal/mol (5956.2207 without restraints) Performing minimization step: 1250. Total energy = 5953.8485 kcal/mol (5949.8783 without restraints) Performing minimization step: 1251. Total energy = 5947.5166 kcal/mol (5943.5482 without restraints) Performing minimization step: 1252. Total energy = 5941.1970 kcal/mol (5937.2304 without restraints) Performing minimization step: 1253. Total energy = 5934.8900 kcal/mol (5930.9252 without restraints) Performing minimization step: 1254. Total energy = 5928.5952 kcal/mol (5924.6322 without restraints) Performing minimization step: 1255. Total energy = 5922.3128 kcal/mol (5918.3515 without restraints) Performing minimization step: 1256. Total energy = 5916.0423 kcal/mol (5912.0828 without restraints) Performing minimization step: 1257. Total energy = 5909.7843 kcal/mol (5905.8267 without restraints) Performing minimization step: 1258. Total energy = 5903.5380 kcal/mol (5899.5822 without restraints) Performing minimization step: 1259. Total energy = 5897.3041 kcal/mol (5893.3500 without restraints) Performing minimization step: 1260. Total energy = 5891.0823 kcal/mol (5887.1300 without restraints) Performing minimization step: 1261. Total energy = 5884.8726 kcal/mol (5880.9220 without restraints) Performing minimization step: 1262. Total energy = 5878.6749 kcal/mol (5874.7261 without restraints) Performing minimization step: 1263. Total energy = 5872.4895 kcal/mol (5868.5424 without restraints) Performing minimization step: 1264. Total energy = 5866.3158 kcal/mol (5862.3704 without restraints) Performing minimization step: 1265. Total energy = 5860.1541 kcal/mol (5856.2105 without restraints) Performing minimization step: 1266. Total energy = 5854.0043 kcal/mol (5850.0624 without restraints) Performing minimization step: 1267. Total energy = 5847.8668 kcal/mol (5843.9267 without restraints) Performing minimization step: 1268. Total energy = 5841.7409 kcal/mol (5837.8025 without restraints) Performing minimization step: 1269. Total energy = 5835.6270 kcal/mol (5831.6903 without restraints) Performing minimization step: 1270. Total energy = 5829.5247 kcal/mol (5825.5897 without restraints) Performing minimization step: 1271. Total energy = 5823.4342 kcal/mol (5819.5010 without restraints) Performing minimization step: 1272. Total energy = 5817.3556 kcal/mol (5813.4240 without restraints) Performing minimization step: 1273. Total energy = 5811.2887 kcal/mol (5807.3588 without restraints) Performing minimization step: 1274. Total energy = 5805.2338 kcal/mol (5801.3058 without restraints) Performing minimization step: 1275. Total energy = 5799.1904 kcal/mol (5795.2639 without restraints) Performing minimization step: 1276. Total energy = 5793.1583 kcal/mol (5789.2334 without restraints) Performing minimization step: 1277. Total energy = 5787.1379 kcal/mol (5783.2147 without restraints) Performing minimization step: 1278. Total energy = 5781.1291 kcal/mol (5777.2076 without restraints) Performing minimization step: 1279. Total energy = 5775.1324 kcal/mol (5771.2125 without restraints) Performing minimization step: 1280. Total energy = 5769.1468 kcal/mol (5765.2286 without restraints) Performing minimization step: 1281. Total energy = 5763.1726 kcal/mol (5759.2560 without restraints) Performing minimization step: 1282. Total energy = 5757.2100 kcal/mol (5753.2952 without restraints) Performing minimization step: 1283. Total energy = 5751.2588 kcal/mol (5747.3455 without restraints) Performing minimization step: 1284. Total energy = 5745.3191 kcal/mol (5741.4075 without restraints) Performing minimization step: 1285. Total energy = 5739.3903 kcal/mol (5735.4803 without restraints) Performing minimization step: 1286. Total energy = 5733.4734 kcal/mol (5729.5651 without restraints) Performing minimization step: 1287. Total energy = 5727.5683 kcal/mol (5723.6617 without restraints) Performing minimization step: 1288. Total energy = 5721.6744 kcal/mol (5717.7693 without restraints) Performing minimization step: 1289. Total energy = 5715.7914 kcal/mol (5711.8878 without restraints) Performing minimization step: 1290. Total energy = 5709.9199 kcal/mol (5706.0180 without restraints) Performing minimization step: 1291. Total energy = 5704.0593 kcal/mol (5700.1590 without restraints) Performing minimization step: 1292. Total energy = 5698.2103 kcal/mol (5694.3116 without restraints) Performing minimization step: 1293. Total energy = 5692.3723 kcal/mol (5688.4753 without restraints) Performing minimization step: 1294. Total energy = 5686.5456 kcal/mol (5682.6501 without restraints) Performing minimization step: 1295. Total energy = 5680.7299 kcal/mol (5676.8360 without restraints) Performing minimization step: 1296. Total energy = 5674.9256 kcal/mol (5671.0333 without restraints) Performing minimization step: 1297. Total energy = 5669.1323 kcal/mol (5665.2416 without restraints) Performing minimization step: 1298. Total energy = 5663.3502 kcal/mol (5659.4610 without restraints) Performing minimization step: 1299. Total energy = 5657.5791 kcal/mol (5653.6914 without restraints) Performing minimization step: 1300. Total energy = 5651.8188 kcal/mol (5647.9326 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 5646.0693 kcal/mol (5642.1848 without restraints) Performing minimization step: 1302. Total energy = 5640.3309 kcal/mol (5636.4480 without restraints) Performing minimization step: 1303. Total energy = 5634.6034 kcal/mol (5630.7220 without restraints) Performing minimization step: 1304. Total energy = 5628.8870 kcal/mol (5625.0072 without restraints) Performing minimization step: 1305. Total energy = 5623.1812 kcal/mol (5619.3029 without restraints) Performing minimization step: 1306. Total energy = 5617.4861 kcal/mol (5613.6092 without restraints) Performing minimization step: 1307. Total energy = 5611.8021 kcal/mol (5607.9267 without restraints) Performing minimization step: 1308. Total energy = 5606.1291 kcal/mol (5602.2552 without restraints) Performing minimization step: 1309. Total energy = 5600.4666 kcal/mol (5596.5943 without restraints) Performing minimization step: 1310. Total energy = 5594.8150 kcal/mol (5590.9442 without restraints) Performing minimization step: 1311. Total energy = 5589.1742 kcal/mol (5585.3049 without restraints) Performing minimization step: 1312. Total energy = 5583.5438 kcal/mol (5579.6759 without restraints) Performing minimization step: 1313. Total energy = 5577.9241 kcal/mol (5574.0578 without restraints) Performing minimization step: 1314. Total energy = 5572.3150 kcal/mol (5568.4502 without restraints) Performing minimization step: 1315. Total energy = 5566.7171 kcal/mol (5562.8538 without restraints) Performing minimization step: 1316. Total energy = 5561.1294 kcal/mol (5557.2675 without restraints) Performing minimization step: 1317. Total energy = 5555.5525 kcal/mol (5551.6924 without restraints) Performing minimization step: 1318. Total energy = 5549.9863 kcal/mol (5546.1274 without restraints) Performing minimization step: 1319. Total energy = 5544.4298 kcal/mol (5540.5724 without restraints) Performing minimization step: 1320. Total energy = 5538.8842 kcal/mol (5535.0283 without restraints) Performing minimization step: 1321. Total energy = 5533.3491 kcal/mol (5529.4946 without restraints) Performing minimization step: 1322. Total energy = 5527.8245 kcal/mol (5523.9714 without restraints) Performing minimization step: 1323. Total energy = 5522.3103 kcal/mol (5518.4587 without restraints) Performing minimization step: 1324. Total energy = 5516.8063 kcal/mol (5512.9561 without restraints) Performing minimization step: 1325. Total energy = 5511.3128 kcal/mol (5507.4641 without restraints) Performing minimization step: 1326. Total energy = 5505.8299 kcal/mol (5501.9826 without restraints) Performing minimization step: 1327. Total energy = 5500.3570 kcal/mol (5496.5111 without restraints) Performing minimization step: 1328. Total energy = 5494.8948 kcal/mol (5491.0504 without restraints) Performing minimization step: 1329. Total energy = 5489.4427 kcal/mol (5485.5997 without restraints) Performing minimization step: 1330. Total energy = 5484.0006 kcal/mol (5480.1590 without restraints) Performing minimization step: 1331. Total energy = 5478.5686 kcal/mol (5474.7284 without restraints) Performing minimization step: 1332. Total energy = 5473.1471 kcal/mol (5469.3083 without restraints) Performing minimization step: 1333. Total energy = 5467.7357 kcal/mol (5463.8983 without restraints) Performing minimization step: 1334. Total energy = 5462.3345 kcal/mol (5458.4985 without restraints) Performing minimization step: 1335. Total energy = 5456.9435 kcal/mol (5453.1090 without restraints) Performing minimization step: 1336. Total energy = 5451.5626 kcal/mol (5447.7294 without restraints) Performing minimization step: 1337. Total energy = 5446.1918 kcal/mol (5442.3600 without restraints) Performing minimization step: 1338. Total energy = 5440.8310 kcal/mol (5437.0006 without restraints) Performing minimization step: 1339. Total energy = 5435.4805 kcal/mol (5431.6514 without restraints) Performing minimization step: 1340. Total energy = 5430.1397 kcal/mol (5426.3120 without restraints) Performing minimization step: 1341. Total energy = 5424.8089 kcal/mol (5420.9826 without restraints) Performing minimization step: 1342. Total energy = 5419.4884 kcal/mol (5415.6635 without restraints) Performing minimization step: 1343. Total energy = 5414.1773 kcal/mol (5410.3537 without restraints) Performing minimization step: 1344. Total energy = 5408.8763 kcal/mol (5405.0541 without restraints) Performing minimization step: 1345. Total energy = 5403.5853 kcal/mol (5399.7644 without restraints) Performing minimization step: 1346. Total energy = 5398.3040 kcal/mol (5394.4845 without restraints) Performing minimization step: 1347. Total energy = 5393.0331 kcal/mol (5389.2149 without restraints) Performing minimization step: 1348. Total energy = 5387.7717 kcal/mol (5383.9548 without restraints) Performing minimization step: 1349. Total energy = 5382.5199 kcal/mol (5378.7044 without restraints) Performing minimization step: 1350. Total energy = 5377.2780 kcal/mol (5373.4639 without restraints) Performing minimization step: 1351. Total energy = 5372.0458 kcal/mol (5368.2329 without restraints) Performing minimization step: 1352. Total energy = 5366.8233 kcal/mol (5363.0118 without restraints) Performing minimization step: 1353. Total energy = 5361.6104 kcal/mol (5357.8002 without restraints) Performing minimization step: 1354. Total energy = 5356.4073 kcal/mol (5352.5984 without restraints) Performing minimization step: 1355. Total energy = 5351.2137 kcal/mol (5347.4062 without restraints) Performing minimization step: 1356. Total energy = 5346.0300 kcal/mol (5342.2238 without restraints) Performing minimization step: 1357. Total energy = 5340.8558 kcal/mol (5337.0508 without restraints) Performing minimization step: 1358. Total energy = 5335.6912 kcal/mol (5331.8875 without restraints) Performing minimization step: 1359. Total energy = 5330.5361 kcal/mol (5326.7337 without restraints) Performing minimization step: 1360. Total energy = 5325.3907 kcal/mol (5321.5896 without restraints) Performing minimization step: 1361. Total energy = 5320.2547 kcal/mol (5316.4549 without restraints) Performing minimization step: 1362. Total energy = 5315.1283 kcal/mol (5311.3297 without restraints) Performing minimization step: 1363. Total energy = 5310.0114 kcal/mol (5306.2142 without restraints) Performing minimization step: 1364. Total energy = 5304.9039 kcal/mol (5301.1079 without restraints) Performing minimization step: 1365. Total energy = 5299.8058 kcal/mol (5296.0111 without restraints) Performing minimization step: 1366. Total energy = 5294.7167 kcal/mol (5290.9232 without restraints) Performing minimization step: 1367. Total energy = 5289.6374 kcal/mol (5285.8452 without restraints) Performing minimization step: 1368. Total energy = 5284.5674 kcal/mol (5280.7765 without restraints) Performing minimization step: 1369. Total energy = 5279.5068 kcal/mol (5275.7171 without restraints) Performing minimization step: 1370. Total energy = 5274.4554 kcal/mol (5270.6669 without restraints) Performing minimization step: 1371. Total energy = 5269.4134 kcal/mol (5265.6262 without restraints) Performing minimization step: 1372. Total energy = 5264.3806 kcal/mol (5260.5947 without restraints) Performing minimization step: 1373. Total energy = 5259.3574 kcal/mol (5255.5727 without restraints) Performing minimization step: 1374. Total energy = 5254.3433 kcal/mol (5250.5599 without restraints) Performing minimization step: 1375. Total energy = 5249.3383 kcal/mol (5245.5561 without restraints) Performing minimization step: 1376. Total energy = 5244.3424 kcal/mol (5240.5612 without restraints) Performing minimization step: 1377. Total energy = 5239.3556 kcal/mol (5235.5758 without restraints) Performing minimization step: 1378. Total energy = 5234.3781 kcal/mol (5230.5995 without restraints) Performing minimization step: 1379. Total energy = 5229.4098 kcal/mol (5225.6324 without restraints) Performing minimization step: 1380. Total energy = 5224.4505 kcal/mol (5220.6742 without restraints) Performing minimization step: 1381. Total energy = 5219.5001 kcal/mol (5215.7250 without restraints) Performing minimization step: 1382. Total energy = 5214.5588 kcal/mol (5210.7851 without restraints) Performing minimization step: 1383. Total energy = 5209.6267 kcal/mol (5205.8542 without restraints) Performing minimization step: 1384. Total energy = 5204.7037 kcal/mol (5200.9323 without restraints) Performing minimization step: 1385. Total energy = 5199.7897 kcal/mol (5196.0195 without restraints) Performing minimization step: 1386. Total energy = 5194.8846 kcal/mol (5191.1156 without restraints) Performing minimization step: 1387. Total energy = 5189.9887 kcal/mol (5186.2209 without restraints) Performing minimization step: 1388. Total energy = 5185.1016 kcal/mol (5181.3351 without restraints) Performing minimization step: 1389. Total energy = 5180.2234 kcal/mol (5176.4579 without restraints) Performing minimization step: 1390. Total energy = 5175.3540 kcal/mol (5171.5897 without restraints) Performing minimization step: 1391. Total energy = 5170.4937 kcal/mol (5166.7306 without restraints) Performing minimization step: 1392. Total energy = 5165.6420 kcal/mol (5161.8801 without restraints) Performing minimization step: 1393. Total energy = 5160.7992 kcal/mol (5157.0385 without restraints) Performing minimization step: 1394. Total energy = 5155.9652 kcal/mol (5152.2056 without restraints) Performing minimization step: 1395. Total energy = 5151.1398 kcal/mol (5147.3813 without restraints) Performing minimization step: 1396. Total energy = 5146.3235 kcal/mol (5142.5662 without restraints) Performing minimization step: 1397. Total energy = 5141.5157 kcal/mol (5137.7595 without restraints) Performing minimization step: 1398. Total energy = 5136.7167 kcal/mol (5132.9617 without restraints) Performing minimization step: 1399. Total energy = 5131.9266 kcal/mol (5128.1727 without restraints) Performing minimization step: 1400. Total energy = 5127.1450 kcal/mol (5123.3923 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 5122.3720 kcal/mol (5118.6203 without restraints) Performing minimization step: 1402. Total energy = 5117.6078 kcal/mol (5113.8573 without restraints) Performing minimization step: 1403. Total energy = 5112.8522 kcal/mol (5109.1029 without restraints) Performing minimization step: 1404. Total energy = 5108.1052 kcal/mol (5104.3570 without restraints) Performing minimization step: 1405. Total energy = 5103.3667 kcal/mol (5099.6196 without restraints) Performing minimization step: 1406. Total energy = 5098.6370 kcal/mol (5094.8910 without restraints) Performing minimization step: 1407. Total energy = 5093.9156 kcal/mol (5090.1707 without restraints) Performing minimization step: 1408. Total energy = 5089.2026 kcal/mol (5085.4588 without restraints) Performing minimization step: 1409. Total energy = 5084.4983 kcal/mol (5080.7556 without restraints) Performing minimization step: 1410. Total energy = 5079.8024 kcal/mol (5076.0608 without restraints) Performing minimization step: 1411. Total energy = 5075.1148 kcal/mol (5071.3743 without restraints) Performing minimization step: 1412. Total energy = 5070.4359 kcal/mol (5066.6965 without restraints) Performing minimization step: 1413. Total energy = 5065.7654 kcal/mol (5062.0271 without restraints) Performing minimization step: 1414. Total energy = 5061.1034 kcal/mol (5057.3663 without restraints) Performing minimization step: 1415. Total energy = 5056.4499 kcal/mol (5052.7138 without restraints) Performing minimization step: 1416. Total energy = 5051.8045 kcal/mol (5048.0694 without restraints) Performing minimization step: 1417. Total energy = 5047.1671 kcal/mol (5043.4332 without restraints) Performing minimization step: 1418. Total energy = 5042.5384 kcal/mol (5038.8055 without restraints) Performing minimization step: 1419. Total energy = 5037.9180 kcal/mol (5034.1862 without restraints) Performing minimization step: 1420. Total energy = 5033.3061 kcal/mol (5029.5754 without restraints) Performing minimization step: 1421. Total energy = 5028.7023 kcal/mol (5024.9726 without restraints) Performing minimization step: 1422. Total energy = 5024.1067 kcal/mol (5020.3781 without restraints) Performing minimization step: 1423. Total energy = 5019.5193 kcal/mol (5015.7918 without restraints) Performing minimization step: 1424. Total energy = 5014.9402 kcal/mol (5011.2137 without restraints) Performing minimization step: 1425. Total energy = 5010.3692 kcal/mol (5006.6438 without restraints) Performing minimization step: 1426. Total energy = 5005.8065 kcal/mol (5002.0821 without restraints) Performing minimization step: 1427. Total energy = 5001.2522 kcal/mol (4997.5290 without restraints) Performing minimization step: 1428. Total energy = 4996.7059 kcal/mol (4992.9836 without restraints) Performing minimization step: 1429. Total energy = 4992.1676 kcal/mol (4988.4463 without restraints) Performing minimization step: 1430. Total energy = 4987.6377 kcal/mol (4983.9175 without restraints) Performing minimization step: 1431. Total energy = 4983.1155 kcal/mol (4979.3963 without restraints) Performing minimization step: 1432. Total energy = 4978.6013 kcal/mol (4974.8832 without restraints) Performing minimization step: 1433. Total energy = 4974.0957 kcal/mol (4970.3786 without restraints) Performing minimization step: 1434. Total energy = 4969.5977 kcal/mol (4965.8815 without restraints) Performing minimization step: 1435. Total energy = 4965.1076 kcal/mol (4961.3925 without restraints) Performing minimization step: 1436. Total energy = 4960.6257 kcal/mol (4956.9116 without restraints) Performing minimization step: 1437. Total energy = 4956.1514 kcal/mol (4952.4383 without restraints) Performing minimization step: 1438. Total energy = 4951.6853 kcal/mol (4947.9734 without restraints) Performing minimization step: 1439. Total energy = 4947.2272 kcal/mol (4943.5162 without restraints) Performing minimization step: 1440. Total energy = 4942.7769 kcal/mol (4939.0668 without restraints) Performing minimization step: 1441. Total energy = 4938.3349 kcal/mol (4934.6259 without restraints) Performing minimization step: 1442. Total energy = 4933.9001 kcal/mol (4930.1921 without restraints) Performing minimization step: 1443. Total energy = 4929.4733 kcal/mol (4925.7662 without restraints) Performing minimization step: 1444. Total energy = 4925.0543 kcal/mol (4921.3483 without restraints) Performing minimization step: 1445. Total energy = 4920.6432 kcal/mol (4916.9381 without restraints) Performing minimization step: 1446. Total energy = 4916.2400 kcal/mol (4912.5359 without restraints) Performing minimization step: 1447. Total energy = 4911.8447 kcal/mol (4908.1418 without restraints) Performing minimization step: 1448. Total energy = 4907.4574 kcal/mol (4903.7553 without restraints) Performing minimization step: 1449. Total energy = 4903.0774 kcal/mol (4899.3763 without restraints) Performing minimization step: 1450. Total energy = 4898.7051 kcal/mol (4895.0050 without restraints) Performing minimization step: 1451. Total energy = 4894.3406 kcal/mol (4890.6414 without restraints) Performing minimization step: 1452. Total energy = 4889.9838 kcal/mol (4886.2856 without restraints) Performing minimization step: 1453. Total energy = 4885.6345 kcal/mol (4881.9374 without restraints) Performing minimization step: 1454. Total energy = 4881.2931 kcal/mol (4877.5968 without restraints) Performing minimization step: 1455. Total energy = 4876.9592 kcal/mol (4873.2639 without restraints) Performing minimization step: 1456. Total energy = 4872.6328 kcal/mol (4868.9384 without restraints) Performing minimization step: 1457. Total energy = 4868.3141 kcal/mol (4864.6207 without restraints) Performing minimization step: 1458. Total energy = 4864.0032 kcal/mol (4860.3108 without restraints) Performing minimization step: 1459. Total energy = 4859.6997 kcal/mol (4856.0082 without restraints) Performing minimization step: 1460. Total energy = 4855.4038 kcal/mol (4851.7132 without restraints) Performing minimization step: 1461. Total energy = 4851.1154 kcal/mol (4847.4257 without restraints) Performing minimization step: 1462. Total energy = 4846.8344 kcal/mol (4843.1457 without restraints) Performing minimization step: 1463. Total energy = 4842.5612 kcal/mol (4838.8734 without restraints) Performing minimization step: 1464. Total energy = 4838.2955 kcal/mol (4834.6086 without restraints) Performing minimization step: 1465. Total energy = 4834.0370 kcal/mol (4830.3511 without restraints) Performing minimization step: 1466. Total energy = 4829.7861 kcal/mol (4826.1012 without restraints) Performing minimization step: 1467. Total energy = 4825.5427 kcal/mol (4821.8587 without restraints) Performing minimization step: 1468. Total energy = 4821.3065 kcal/mol (4817.6234 without restraints) Performing minimization step: 1469. Total energy = 4817.0777 kcal/mol (4813.3955 without restraints) Performing minimization step: 1470. Total energy = 4812.8560 kcal/mol (4809.1748 without restraints) Performing minimization step: 1471. Total energy = 4808.6421 kcal/mol (4804.9618 without restraints) Performing minimization step: 1472. Total energy = 4804.4355 kcal/mol (4800.7560 without restraints) Performing minimization step: 1473. Total energy = 4800.2361 kcal/mol (4796.5576 without restraints) Performing minimization step: 1474. Total energy = 4796.0440 kcal/mol (4792.3664 without restraints) Performing minimization step: 1475. Total energy = 4791.8593 kcal/mol (4788.1826 without restraints) Performing minimization step: 1476. Total energy = 4787.6819 kcal/mol (4784.0062 without restraints) Performing minimization step: 1477. Total energy = 4783.5118 kcal/mol (4779.8369 without restraints) Performing minimization step: 1478. Total energy = 4779.3488 kcal/mol (4775.6748 without restraints) Performing minimization step: 1479. Total energy = 4775.1932 kcal/mol (4771.5201 without restraints) Performing minimization step: 1480. Total energy = 4771.0444 kcal/mol (4767.3722 without restraints) Performing minimization step: 1481. Total energy = 4766.9030 kcal/mol (4763.2317 without restraints) Performing minimization step: 1482. Total energy = 4762.7688 kcal/mol (4759.0984 without restraints) Performing minimization step: 1483. Total energy = 4758.6418 kcal/mol (4754.9722 without restraints) Performing minimization step: 1484. Total energy = 4754.5217 kcal/mol (4750.8530 without restraints) Performing minimization step: 1485. Total energy = 4750.4089 kcal/mol (4746.7410 without restraints) Performing minimization step: 1486. Total energy = 4746.3032 kcal/mol (4742.6363 without restraints) Performing minimization step: 1487. Total energy = 4742.2046 kcal/mol (4738.5386 without restraints) Performing minimization step: 1488. Total energy = 4738.1132 kcal/mol (4734.4480 without restraints) Performing minimization step: 1489. Total energy = 4734.0288 kcal/mol (4730.3644 without restraints) Performing minimization step: 1490. Total energy = 4729.9514 kcal/mol (4726.2879 without restraints) Performing minimization step: 1491. Total energy = 4725.8812 kcal/mol (4722.2186 without restraints) Performing minimization step: 1492. Total energy = 4721.8175 kcal/mol (4718.1557 without restraints) Performing minimization step: 1493. Total energy = 4717.7612 kcal/mol (4714.1003 without restraints) Performing minimization step: 1494. Total energy = 4713.7120 kcal/mol (4710.0521 without restraints) Performing minimization step: 1495. Total energy = 4709.6699 kcal/mol (4706.0107 without restraints) Performing minimization step: 1496. Total energy = 4705.6345 kcal/mol (4701.9761 without restraints) Performing minimization step: 1497. Total energy = 4701.6060 kcal/mol (4697.9485 without restraints) Performing minimization step: 1498. Total energy = 4697.5847 kcal/mol (4693.9281 without restraints) Performing minimization step: 1499. Total energy = 4693.5702 kcal/mol (4689.9145 without restraints) Performing minimization step: 1500. Total energy = 4689.5624 kcal/mol (4685.9075 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 4685.5615 kcal/mol (4681.9074 without restraints) Performing minimization step: 1502. Total energy = 4681.5676 kcal/mol (4677.9143 without restraints) Performing minimization step: 1503. Total energy = 4677.5804 kcal/mol (4673.9279 without restraints) Performing minimization step: 1504. Total energy = 4673.6003 kcal/mol (4669.9486 without restraints) Performing minimization step: 1505. Total energy = 4669.6268 kcal/mol (4665.9759 without restraints) Performing minimization step: 1506. Total energy = 4665.6599 kcal/mol (4662.0099 without restraints) Performing minimization step: 1507. Total energy = 4661.6996 kcal/mol (4658.0503 without restraints) Performing minimization step: 1508. Total energy = 4657.7462 kcal/mol (4654.0979 without restraints) Performing minimization step: 1509. Total energy = 4653.7997 kcal/mol (4650.1522 without restraints) Performing minimization step: 1510. Total energy = 4649.8599 kcal/mol (4646.2132 without restraints) Performing minimization step: 1511. Total energy = 4645.9268 kcal/mol (4642.2809 without restraints) Performing minimization step: 1512. Total energy = 4642.0002 kcal/mol (4638.3551 without restraints) Performing minimization step: 1513. Total energy = 4638.0807 kcal/mol (4634.4364 without restraints) Performing minimization step: 1514. Total energy = 4634.1676 kcal/mol (4630.5241 without restraints) Performing minimization step: 1515. Total energy = 4630.2613 kcal/mol (4626.6187 without restraints) Performing minimization step: 1516. Total energy = 4626.3616 kcal/mol (4622.7198 without restraints) Performing minimization step: 1517. Total energy = 4622.4683 kcal/mol (4618.8273 without restraints) Performing minimization step: 1518. Total energy = 4618.5816 kcal/mol (4614.9414 without restraints) Performing minimization step: 1519. Total energy = 4614.7017 kcal/mol (4611.0622 without restraints) Performing minimization step: 1520. Total energy = 4610.8284 kcal/mol (4607.1897 without restraints) Performing minimization step: 1521. Total energy = 4606.9614 kcal/mol (4603.3235 without restraints) Performing minimization step: 1522. Total energy = 4603.1011 kcal/mol (4599.4640 without restraints) Performing minimization step: 1523. Total energy = 4599.2474 kcal/mol (4595.6111 without restraints) Performing minimization step: 1524. Total energy = 4595.4003 kcal/mol (4591.7647 without restraints) Performing minimization step: 1525. Total energy = 4591.5594 kcal/mol (4587.9247 without restraints) Performing minimization step: 1526. Total energy = 4587.7254 kcal/mol (4584.0914 without restraints) Performing minimization step: 1527. Total energy = 4583.8979 kcal/mol (4580.2647 without restraints) Performing minimization step: 1528. Total energy = 4580.0765 kcal/mol (4576.4440 without restraints) Performing minimization step: 1529. Total energy = 4576.2618 kcal/mol (4572.6300 without restraints) Performing minimization step: 1530. Total energy = 4572.4531 kcal/mol (4568.8222 without restraints) Performing minimization step: 1531. Total energy = 4568.6511 kcal/mol (4565.0210 without restraints) Performing minimization step: 1532. Total energy = 4564.8555 kcal/mol (4561.2262 without restraints) Performing minimization step: 1533. Total energy = 4561.0666 kcal/mol (4557.4380 without restraints) Performing minimization step: 1534. Total energy = 4557.2838 kcal/mol (4553.6559 without restraints) Performing minimization step: 1535. Total energy = 4553.5077 kcal/mol (4549.8806 without restraints) Performing minimization step: 1536. Total energy = 4549.7370 kcal/mol (4546.1107 without restraints) Performing minimization step: 1537. Total energy = 4545.9732 kcal/mol (4542.3476 without restraints) Performing minimization step: 1538. Total energy = 4542.2155 kcal/mol (4538.5907 without restraints) Performing minimization step: 1539. Total energy = 4538.4643 kcal/mol (4534.8402 without restraints) Performing minimization step: 1540. Total energy = 4534.7193 kcal/mol (4531.0959 without restraints) Performing minimization step: 1541. Total energy = 4530.9808 kcal/mol (4527.3582 without restraints) Performing minimization step: 1542. Total energy = 4527.2486 kcal/mol (4523.6268 without restraints) Performing minimization step: 1543. Total energy = 4523.5224 kcal/mol (4519.9012 without restraints) Performing minimization step: 1544. Total energy = 4519.8026 kcal/mol (4516.1822 without restraints) Performing minimization step: 1545. Total energy = 4516.0889 kcal/mol (4512.4693 without restraints) Performing minimization step: 1546. Total energy = 4512.3816 kcal/mol (4508.7628 without restraints) Performing minimization step: 1547. Total energy = 4508.6805 kcal/mol (4505.0623 without restraints) Performing minimization step: 1548. Total energy = 4504.9854 kcal/mol (4501.3680 without restraints) Performing minimization step: 1549. Total energy = 4501.2965 kcal/mol (4497.6800 without restraints) Performing minimization step: 1550. Total energy = 4497.6140 kcal/mol (4493.9981 without restraints) Performing minimization step: 1551. Total energy = 4493.9372 kcal/mol (4490.3220 without restraints) Performing minimization step: 1552. Total energy = 4490.2670 kcal/mol (4486.6525 without restraints) Performing minimization step: 1553. Total energy = 4486.6024 kcal/mol (4482.9886 without restraints) Performing minimization step: 1554. Total energy = 4482.9440 kcal/mol (4479.3310 without restraints) Performing minimization step: 1555. Total energy = 4479.2916 kcal/mol (4475.6792 without restraints) Performing minimization step: 1556. Total energy = 4475.6454 kcal/mol (4472.0338 without restraints) Performing minimization step: 1557. Total energy = 4472.0051 kcal/mol (4468.3942 without restraints) Performing minimization step: 1558. Total energy = 4468.3707 kcal/mol (4464.7605 without restraints) Performing minimization step: 1559. Total energy = 4464.7426 kcal/mol (4461.1331 without restraints) Performing minimization step: 1560. Total energy = 4461.1203 kcal/mol (4457.5115 without restraints) Performing minimization step: 1561. Total energy = 4457.5044 kcal/mol (4453.8964 without restraints) Performing minimization step: 1562. Total energy = 4453.8944 kcal/mol (4450.2870 without restraints) Performing minimization step: 1563. Total energy = 4450.2902 kcal/mol (4446.6835 without restraints) Performing minimization step: 1564. Total energy = 4446.6920 kcal/mol (4443.0860 without restraints) Performing minimization step: 1565. Total energy = 4443.0997 kcal/mol (4439.4944 without restraints) Performing minimization step: 1566. Total energy = 4439.5135 kcal/mol (4435.9089 without restraints) Performing minimization step: 1567. Total energy = 4435.9333 kcal/mol (4432.3294 without restraints) Performing minimization step: 1568. Total energy = 4432.3590 kcal/mol (4428.7558 without restraints) Performing minimization step: 1569. Total energy = 4428.7903 kcal/mol (4425.1877 without restraints) Performing minimization step: 1570. Total energy = 4425.2277 kcal/mol (4421.6259 without restraints) Performing minimization step: 1571. Total energy = 4421.6708 kcal/mol (4418.0697 without restraints) Performing minimization step: 1572. Total energy = 4418.1199 kcal/mol (4414.5195 without restraints) Performing minimization step: 1573. Total energy = 4414.5747 kcal/mol (4410.9749 without restraints) Performing minimization step: 1574. Total energy = 4411.0353 kcal/mol (4407.4362 without restraints) Performing minimization step: 1575. Total energy = 4407.5017 kcal/mol (4403.9033 without restraints) Performing minimization step: 1576. Total energy = 4403.9739 kcal/mol (4400.3762 without restraints) Performing minimization step: 1577. Total energy = 4400.4520 kcal/mol (4396.8551 without restraints) Performing minimization step: 1578. Total energy = 4396.9359 kcal/mol (4393.3395 without restraints) Performing minimization step: 1579. Total energy = 4393.4254 kcal/mol (4389.8297 without restraints) Performing minimization step: 1580. Total energy = 4389.9205 kcal/mol (4386.3255 without restraints) Performing minimization step: 1581. Total energy = 4386.4214 kcal/mol (4382.8270 without restraints) Performing minimization step: 1582. Total energy = 4382.9283 kcal/mol (4379.3347 without restraints) Performing minimization step: 1583. Total energy = 4379.4410 kcal/mol (4375.8478 without restraints) Performing minimization step: 1584. Total energy = 4375.9590 kcal/mol (4372.3666 without restraints) Performing minimization step: 1585. Total energy = 4372.4829 kcal/mol (4368.8912 without restraints) Performing minimization step: 1586. Total energy = 4369.0126 kcal/mol (4365.4215 without restraints) Performing minimization step: 1587. Total energy = 4365.5476 kcal/mol (4361.9571 without restraints) Performing minimization step: 1588. Total energy = 4362.0883 kcal/mol (4358.4986 without restraints) Performing minimization step: 1589. Total energy = 4358.6348 kcal/mol (4355.0458 without restraints) Performing minimization step: 1590. Total energy = 4355.1868 kcal/mol (4351.5982 without restraints) Performing minimization step: 1591. Total energy = 4351.7439 kcal/mol (4348.1561 without restraints) Performing minimization step: 1592. Total energy = 4348.3072 kcal/mol (4344.7200 without restraints) Performing minimization step: 1593. Total energy = 4344.8760 kcal/mol (4341.2895 without restraints) Performing minimization step: 1594. Total energy = 4341.4504 kcal/mol (4337.8645 without restraints) Performing minimization step: 1595. Total energy = 4338.0303 kcal/mol (4334.4451 without restraints) Performing minimization step: 1596. Total energy = 4334.6158 kcal/mol (4331.0312 without restraints) Performing minimization step: 1597. Total energy = 4331.2071 kcal/mol (4327.6231 without restraints) Performing minimization step: 1598. Total energy = 4327.8037 kcal/mol (4324.2205 without restraints) Performing minimization step: 1599. Total energy = 4324.4057 kcal/mol (4320.8230 without restraints) Performing minimization step: 1600. Total energy = 4321.0132 kcal/mol (4317.4312 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 4317.6262 kcal/mol (4314.0447 without restraints) Performing minimization step: 1602. Total energy = 4314.2451 kcal/mol (4310.6643 without restraints) Performing minimization step: 1603. Total energy = 4310.8691 kcal/mol (4307.2889 without restraints) Performing minimization step: 1604. Total energy = 4307.4984 kcal/mol (4303.9189 without restraints) Performing minimization step: 1605. Total energy = 4304.1333 kcal/mol (4300.5544 without restraints) Performing minimization step: 1606. Total energy = 4300.7735 kcal/mol (4297.1951 without restraints) Performing minimization step: 1607. Total energy = 4297.4192 kcal/mol (4293.8416 without restraints) Performing minimization step: 1608. Total energy = 4294.0705 kcal/mol (4290.4935 without restraints) Performing minimization step: 1609. Total energy = 4290.7272 kcal/mol (4287.1508 without restraints) Performing minimization step: 1610. Total energy = 4287.3890 kcal/mol (4283.8132 without restraints) Performing minimization step: 1611. Total energy = 4284.0562 kcal/mol (4280.4810 without restraints) Performing minimization step: 1612. Total energy = 4280.7288 kcal/mol (4277.1542 without restraints) Performing minimization step: 1613. Total energy = 4277.4068 kcal/mol (4273.8330 without restraints) Performing minimization step: 1614. Total energy = 4274.0902 kcal/mol (4270.5168 without restraints) Performing minimization step: 1615. Total energy = 4270.7790 kcal/mol (4267.2062 without restraints) Performing minimization step: 1616. Total energy = 4267.4730 kcal/mol (4263.9011 without restraints) Performing minimization step: 1617. Total energy = 4264.1722 kcal/mol (4260.6007 without restraints) Performing minimization step: 1618. Total energy = 4260.8766 kcal/mol (4257.3057 without restraints) Performing minimization step: 1619. Total energy = 4257.5863 kcal/mol (4254.0160 without restraints) Performing minimization step: 1620. Total energy = 4254.3011 kcal/mol (4250.7314 without restraints) Performing minimization step: 1621. Total energy = 4251.0214 kcal/mol (4247.4523 without restraints) Performing minimization step: 1622. Total energy = 4247.7471 kcal/mol (4244.1786 without restraints) Performing minimization step: 1623. Total energy = 4244.4778 kcal/mol (4240.9098 without restraints) Performing minimization step: 1624. Total energy = 4241.2138 kcal/mol (4237.6465 without restraints) Performing minimization step: 1625. Total energy = 4237.9547 kcal/mol (4234.3880 without restraints) Performing minimization step: 1626. Total energy = 4234.7009 kcal/mol (4231.1348 without restraints) Performing minimization step: 1627. Total energy = 4231.4522 kcal/mol (4227.8866 without restraints) Performing minimization step: 1628. Total energy = 4228.2086 kcal/mol (4224.6435 without restraints) Performing minimization step: 1629. Total energy = 4224.9702 kcal/mol (4221.4059 without restraints) Performing minimization step: 1630. Total energy = 4221.7374 kcal/mol (4218.1736 without restraints) Performing minimization step: 1631. Total energy = 4218.5092 kcal/mol (4214.9460 without restraints) Performing minimization step: 1632. Total energy = 4215.2865 kcal/mol (4211.7239 without restraints) Performing minimization step: 1633. Total energy = 4212.0690 kcal/mol (4208.5069 without restraints) Performing minimization step: 1634. Total energy = 4208.8564 kcal/mol (4205.2949 without restraints) Performing minimization step: 1635. Total energy = 4205.6488 kcal/mol (4202.0879 without restraints) Performing minimization step: 1636. Total energy = 4202.4462 kcal/mol (4198.8859 without restraints) Performing minimization step: 1637. Total energy = 4199.2490 kcal/mol (4195.6892 without restraints) Performing minimization step: 1638. Total energy = 4196.0570 kcal/mol (4192.4979 without restraints) Performing minimization step: 1639. Total energy = 4192.8702 kcal/mol (4189.3116 without restraints) Performing minimization step: 1640. Total energy = 4189.6878 kcal/mol (4186.1296 without restraints) Performing minimization step: 1641. Total energy = 4186.5106 kcal/mol (4182.9532 without restraints) Performing minimization step: 1642. Total energy = 4183.3384 kcal/mol (4179.7815 without restraints) Performing minimization step: 1643. Total energy = 4180.1711 kcal/mol (4176.6148 without restraints) Performing minimization step: 1644. Total energy = 4177.0090 kcal/mol (4173.4533 without restraints) Performing minimization step: 1645. Total energy = 4173.8518 kcal/mol (4170.2966 without restraints) Performing minimization step: 1646. Total energy = 4170.6995 kcal/mol (4167.1449 without restraints) Performing minimization step: 1647. Total energy = 4167.5522 kcal/mol (4163.9981 without restraints) Performing minimization step: 1648. Total energy = 4164.4098 kcal/mol (4160.8563 without restraints) Performing minimization step: 1649. Total energy = 4161.2727 kcal/mol (4157.7198 without restraints) Performing minimization step: 1650. Total energy = 4158.1402 kcal/mol (4154.5878 without restraints) Performing minimization step: 1651. Total energy = 4155.0124 kcal/mol (4151.4606 without restraints) Performing minimization step: 1652. Total energy = 4151.8894 kcal/mol (4148.3381 without restraints) Performing minimization step: 1653. Total energy = 4148.7714 kcal/mol (4145.2206 without restraints) Performing minimization step: 1654. Total energy = 4145.6583 kcal/mol (4142.1081 without restraints) Performing minimization step: 1655. Total energy = 4142.5501 kcal/mol (4139.0003 without restraints) Performing minimization step: 1656. Total energy = 4139.4473 kcal/mol (4135.8982 without restraints) Performing minimization step: 1657. Total energy = 4136.3490 kcal/mol (4132.8004 without restraints) Performing minimization step: 1658. Total energy = 4133.2555 kcal/mol (4129.7075 without restraints) Performing minimization step: 1659. Total energy = 4130.1670 kcal/mol (4126.6195 without restraints) Performing minimization step: 1660. Total energy = 4127.0826 kcal/mol (4123.5357 without restraints) Performing minimization step: 1661. Total energy = 4124.0036 kcal/mol (4120.4572 without restraints) Performing minimization step: 1662. Total energy = 4120.9293 kcal/mol (4117.3834 without restraints) Performing minimization step: 1663. Total energy = 4117.8600 kcal/mol (4114.3147 without restraints) Performing minimization step: 1664. Total energy = 4114.7950 kcal/mol (4111.2503 without restraints) Performing minimization step: 1665. Total energy = 4111.7352 kcal/mol (4108.1909 without restraints) Performing minimization step: 1666. Total energy = 4108.6802 kcal/mol (4105.1365 without restraints) Performing minimization step: 1667. Total energy = 4105.6298 kcal/mol (4102.0867 without restraints) Performing minimization step: 1668. Total energy = 4102.5847 kcal/mol (4099.0420 without restraints) Performing minimization step: 1669. Total energy = 4099.5437 kcal/mol (4096.0015 without restraints) Performing minimization step: 1670. Total energy = 4096.5076 kcal/mol (4092.9660 without restraints) Performing minimization step: 1671. Total energy = 4093.4754 kcal/mol (4089.9344 without restraints) Performing minimization step: 1672. Total energy = 4090.4486 kcal/mol (4086.9081 without restraints) Performing minimization step: 1673. Total energy = 4087.4265 kcal/mol (4083.8864 without restraints) Performing minimization step: 1674. Total energy = 4084.4088 kcal/mol (4080.8694 without restraints) Performing minimization step: 1675. Total energy = 4081.3960 kcal/mol (4077.8571 without restraints) Performing minimization step: 1676. Total energy = 4078.3879 kcal/mol (4074.8495 without restraints) Performing minimization step: 1677. Total energy = 4075.3843 kcal/mol (4071.8463 without restraints) Performing minimization step: 1678. Total energy = 4072.3854 kcal/mol (4068.8480 without restraints) Performing minimization step: 1679. Total energy = 4069.3911 kcal/mol (4065.8542 without restraints) Performing minimization step: 1680. Total energy = 4066.4015 kcal/mol (4062.8651 without restraints) Performing minimization step: 1681. Total energy = 4063.4167 kcal/mol (4059.8808 without restraints) Performing minimization step: 1682. Total energy = 4060.4362 kcal/mol (4056.9009 without restraints) Performing minimization step: 1683. Total energy = 4057.4605 kcal/mol (4053.9255 without restraints) Performing minimization step: 1684. Total energy = 4054.4892 kcal/mol (4050.9550 without restraints) Performing minimization step: 1685. Total energy = 4051.5226 kcal/mol (4047.9887 without restraints) Performing minimization step: 1686. Total energy = 4048.5607 kcal/mol (4045.0275 without restraints) Performing minimization step: 1687. Total energy = 4045.6034 kcal/mol (4042.0706 without restraints) Performing minimization step: 1688. Total energy = 4042.6508 kcal/mol (4039.1185 without restraints) Performing minimization step: 1689. Total energy = 4039.7023 kcal/mol (4036.1706 without restraints) Performing minimization step: 1690. Total energy = 4036.7586 kcal/mol (4033.2273 without restraints) Performing minimization step: 1691. Total energy = 4033.8195 kcal/mol (4030.2887 without restraints) Performing minimization step: 1692. Total energy = 4030.8845 kcal/mol (4027.3542 without restraints) Performing minimization step: 1693. Total energy = 4027.9542 kcal/mol (4024.4244 without restraints) Performing minimization step: 1694. Total energy = 4025.0288 kcal/mol (4021.4995 without restraints) Performing minimization step: 1695. Total energy = 4022.1069 kcal/mol (4018.5778 without restraints) Performing minimization step: 1696. Total energy = 4019.1898 kcal/mol (4015.6615 without restraints) Performing minimization step: 1697. Total energy = 4016.2772 kcal/mol (4012.7495 without restraints) Performing minimization step: 1698. Total energy = 4013.3691 kcal/mol (4009.8418 without restraints) Performing minimization step: 1699. Total energy = 4010.4653 kcal/mol (4006.9385 without restraints) Performing minimization step: 1700. Total energy = 4007.5660 kcal/mol (4004.0397 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 4004.6713 kcal/mol (4001.1454 without restraints) Performing minimization step: 1702. Total energy = 4001.7809 kcal/mol (3998.2556 without restraints) Performing minimization step: 1703. Total energy = 3998.8948 kcal/mol (3995.3699 without restraints) Performing minimization step: 1704. Total energy = 3996.0133 kcal/mol (3992.4889 without restraints) Performing minimization step: 1705. Total energy = 3993.1355 kcal/mol (3989.6116 without restraints) Performing minimization step: 1706. Total energy = 3990.2625 kcal/mol (3986.7391 without restraints) Performing minimization step: 1707. Total energy = 3987.3941 kcal/mol (3983.8711 without restraints) Performing minimization step: 1708. Total energy = 3984.5299 kcal/mol (3981.0075 without restraints) Performing minimization step: 1709. Total energy = 3981.6700 kcal/mol (3978.1480 without restraints) Performing minimization step: 1710. Total energy = 3978.8143 kcal/mol (3975.2929 without restraints) Performing minimization step: 1711. Total energy = 3975.9631 kcal/mol (3972.4421 without restraints) Performing minimization step: 1712. Total energy = 3973.1162 kcal/mol (3969.5956 without restraints) Performing minimization step: 1713. Total energy = 3970.2735 kcal/mol (3966.7535 without restraints) Performing minimization step: 1714. Total energy = 3967.4354 kcal/mol (3963.9158 without restraints) Performing minimization step: 1715. Total energy = 3964.6015 kcal/mol (3961.0824 without restraints) Performing minimization step: 1716. Total energy = 3961.7721 kcal/mol (3958.2534 without restraints) Performing minimization step: 1717. Total energy = 3958.9463 kcal/mol (3955.4281 without restraints) Performing minimization step: 1718. Total energy = 3956.1250 kcal/mol (3952.6073 without restraints) Performing minimization step: 1719. Total energy = 3953.3082 kcal/mol (3949.7910 without restraints) Performing minimization step: 1720. Total energy = 3950.4954 kcal/mol (3946.9786 without restraints) Performing minimization step: 1721. Total energy = 3947.6867 kcal/mol (3944.1703 without restraints) Performing minimization step: 1722. Total energy = 3944.8823 kcal/mol (3941.3665 without restraints) Performing minimization step: 1723. Total energy = 3942.0824 kcal/mol (3938.5671 without restraints) Performing minimization step: 1724. Total energy = 3939.2863 kcal/mol (3935.7714 without restraints) Performing minimization step: 1725. Total energy = 3936.4946 kcal/mol (3932.9802 without restraints) Performing minimization step: 1726. Total energy = 3933.7072 kcal/mol (3930.1932 without restraints) Performing minimization step: 1727. Total energy = 3930.9238 kcal/mol (3927.4104 without restraints) Performing minimization step: 1728. Total energy = 3928.1448 kcal/mol (3924.6317 without restraints) Performing minimization step: 1729. Total energy = 3925.3698 kcal/mol (3921.8572 without restraints) Performing minimization step: 1730. Total energy = 3922.5989 kcal/mol (3919.0868 without restraints) Performing minimization step: 1731. Total energy = 3919.8322 kcal/mol (3916.3205 without restraints) Performing minimization step: 1732. Total energy = 3917.0698 kcal/mol (3913.5587 without restraints) Performing minimization step: 1733. Total energy = 3914.3115 kcal/mol (3910.8008 without restraints) Performing minimization step: 1734. Total energy = 3911.5572 kcal/mol (3908.0469 without restraints) Performing minimization step: 1735. Total energy = 3908.8069 kcal/mol (3905.2969 without restraints) Performing minimization step: 1736. Total energy = 3906.0608 kcal/mol (3902.5514 without restraints) Performing minimization step: 1737. Total energy = 3903.3188 kcal/mol (3899.8098 without restraints) Performing minimization step: 1738. Total energy = 3900.5809 kcal/mol (3897.0724 without restraints) Performing minimization step: 1739. Total energy = 3897.8466 kcal/mol (3894.3386 without restraints) Performing minimization step: 1740. Total energy = 3895.1168 kcal/mol (3891.6092 without restraints) Performing minimization step: 1741. Total energy = 3892.3913 kcal/mol (3888.8842 without restraints) Performing minimization step: 1742. Total energy = 3889.6696 kcal/mol (3886.1627 without restraints) Performing minimization step: 1743. Total energy = 3886.9519 kcal/mol (3883.4456 without restraints) Performing minimization step: 1744. Total energy = 3884.2384 kcal/mol (3880.7325 without restraints) Performing minimization step: 1745. Total energy = 3881.5288 kcal/mol (3878.0234 without restraints) Performing minimization step: 1746. Total energy = 3878.8233 kcal/mol (3875.3183 without restraints) Performing minimization step: 1747. Total energy = 3876.1221 kcal/mol (3872.6177 without restraints) Performing minimization step: 1748. Total energy = 3873.4247 kcal/mol (3869.9206 without restraints) Performing minimization step: 1749. Total energy = 3870.7308 kcal/mol (3867.2272 without restraints) Performing minimization step: 1750. Total energy = 3868.0413 kcal/mol (3864.5381 without restraints) Performing minimization step: 1751. Total energy = 3865.3558 kcal/mol (3861.8530 without restraints) Performing minimization step: 1752. Total energy = 3862.6744 kcal/mol (3859.1721 without restraints) Performing minimization step: 1753. Total energy = 3859.9968 kcal/mol (3856.4949 without restraints) Performing minimization step: 1754. Total energy = 3857.3232 kcal/mol (3853.8218 without restraints) Performing minimization step: 1755. Total energy = 3854.6536 kcal/mol (3851.1526 without restraints) Performing minimization step: 1756. Total energy = 3851.9878 kcal/mol (3848.4871 without restraints) Performing minimization step: 1757. Total energy = 3849.3259 kcal/mol (3845.8257 without restraints) Performing minimization step: 1758. Total energy = 3846.6682 kcal/mol (3843.1685 without restraints) Performing minimization step: 1759. Total energy = 3844.0143 kcal/mol (3840.5150 without restraints) Performing minimization step: 1760. Total energy = 3841.3642 kcal/mol (3837.8653 without restraints) Performing minimization step: 1761. Total energy = 3838.7180 kcal/mol (3835.2196 without restraints) Performing minimization step: 1762. Total energy = 3836.0757 kcal/mol (3832.5777 without restraints) Performing minimization step: 1763. Total energy = 3833.4373 kcal/mol (3829.9397 without restraints) Performing minimization step: 1764. Total energy = 3830.8028 kcal/mol (3827.3056 without restraints) Performing minimization step: 1765. Total energy = 3828.1723 kcal/mol (3824.6756 without restraints) Performing minimization step: 1766. Total energy = 3825.5453 kcal/mol (3822.0490 without restraints) Performing minimization step: 1767. Total energy = 3822.9226 kcal/mol (3819.4267 without restraints) Performing minimization step: 1768. Total energy = 3820.3035 kcal/mol (3816.8080 without restraints) Performing minimization step: 1769. Total energy = 3817.6882 kcal/mol (3814.1931 without restraints) Performing minimization step: 1770. Total energy = 3815.0767 kcal/mol (3811.5821 without restraints) Performing minimization step: 1771. Total energy = 3812.4691 kcal/mol (3808.9749 without restraints) Performing minimization step: 1772. Total energy = 3809.8652 kcal/mol (3806.3714 without restraints) Performing minimization step: 1773. Total energy = 3807.2658 kcal/mol (3803.7724 without restraints) Performing minimization step: 1774. Total energy = 3804.6694 kcal/mol (3801.1764 without restraints) Performing minimization step: 1775. Total energy = 3802.0770 kcal/mol (3798.5844 without restraints) Performing minimization step: 1776. Total energy = 3799.4886 kcal/mol (3795.9965 without restraints) Performing minimization step: 1777. Total energy = 3796.9036 kcal/mol (3793.4118 without restraints) Performing minimization step: 1778. Total energy = 3794.3224 kcal/mol (3790.8311 without restraints) Performing minimization step: 1779. Total energy = 3791.7451 kcal/mol (3788.2542 without restraints) Performing minimization step: 1780. Total energy = 3789.1715 kcal/mol (3785.6810 without restraints) Performing minimization step: 1781. Total energy = 3786.6017 kcal/mol (3783.1115 without restraints) Performing minimization step: 1782. Total energy = 3784.0356 kcal/mol (3780.5458 without restraints) Performing minimization step: 1783. Total energy = 3781.4731 kcal/mol (3777.9838 without restraints) Performing minimization step: 1784. Total energy = 3778.9149 kcal/mol (3775.4259 without restraints) Performing minimization step: 1785. Total energy = 3776.3602 kcal/mol (3772.8717 without restraints) Performing minimization step: 1786. Total energy = 3773.8092 kcal/mol (3770.3211 without restraints) Performing minimization step: 1787. Total energy = 3771.2617 kcal/mol (3767.7740 without restraints) Performing minimization step: 1788. Total energy = 3768.7180 kcal/mol (3765.2307 without restraints) Performing minimization step: 1789. Total energy = 3766.1779 kcal/mol (3762.6909 without restraints) Performing minimization step: 1790. Total energy = 3763.6413 kcal/mol (3760.1548 without restraints) Performing minimization step: 1791. Total energy = 3761.1083 kcal/mol (3757.6222 without restraints) Performing minimization step: 1792. Total energy = 3758.5794 kcal/mol (3755.0937 without restraints) Performing minimization step: 1793. Total energy = 3756.0540 kcal/mol (3752.5687 without restraints) Performing minimization step: 1794. Total energy = 3753.5321 kcal/mol (3750.0472 without restraints) Performing minimization step: 1795. Total energy = 3751.0139 kcal/mol (3747.5294 without restraints) Performing minimization step: 1796. Total energy = 3748.4995 kcal/mol (3745.0153 without restraints) Performing minimization step: 1797. Total energy = 3745.9886 kcal/mol (3742.5050 without restraints) Performing minimization step: 1798. Total energy = 3743.4814 kcal/mol (3739.9981 without restraints) Performing minimization step: 1799. Total energy = 3740.9777 kcal/mol (3737.4948 without restraints) Performing minimization step: 1800. Total energy = 3738.4775 kcal/mol (3734.9951 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 3735.9812 kcal/mol (3732.4990 without restraints) Performing minimization step: 1802. Total energy = 3733.4884 kcal/mol (3730.0067 without restraints) Performing minimization step: 1803. Total energy = 3730.9991 kcal/mol (3727.5178 without restraints) Performing minimization step: 1804. Total energy = 3728.5135 kcal/mol (3725.0326 without restraints) Performing minimization step: 1805. Total energy = 3726.0312 kcal/mol (3722.5506 without restraints) Performing minimization step: 1806. Total energy = 3723.5526 kcal/mol (3720.0724 without restraints) Performing minimization step: 1807. Total energy = 3721.0775 kcal/mol (3717.5977 without restraints) Performing minimization step: 1808. Total energy = 3718.6064 kcal/mol (3715.1271 without restraints) Performing minimization step: 1809. Total energy = 3716.1386 kcal/mol (3712.6596 without restraints) Performing minimization step: 1810. Total energy = 3713.6740 kcal/mol (3710.1954 without restraints) Performing minimization step: 1811. Total energy = 3711.2131 kcal/mol (3707.7349 without restraints) Performing minimization step: 1812. Total energy = 3708.7558 kcal/mol (3705.2779 without restraints) Performing minimization step: 1813. Total energy = 3706.3021 kcal/mol (3702.8246 without restraints) Performing minimization step: 1814. Total energy = 3703.8518 kcal/mol (3700.3747 without restraints) Performing minimization step: 1815. Total energy = 3701.4053 kcal/mol (3697.9286 without restraints) Performing minimization step: 1816. Total energy = 3698.9620 kcal/mol (3695.4856 without restraints) Performing minimization step: 1817. Total energy = 3696.5223 kcal/mol (3693.0464 without restraints) Performing minimization step: 1818. Total energy = 3694.0862 kcal/mol (3690.6106 without restraints) Performing minimization step: 1819. Total energy = 3691.6534 kcal/mol (3688.1781 without restraints) Performing minimization step: 1820. Total energy = 3689.2240 kcal/mol (3685.7491 without restraints) Performing minimization step: 1821. Total energy = 3686.7980 kcal/mol (3683.3235 without restraints) Performing minimization step: 1822. Total energy = 3684.3755 kcal/mol (3680.9014 without restraints) Performing minimization step: 1823. Total energy = 3681.9565 kcal/mol (3678.4827 without restraints) Performing minimization step: 1824. Total energy = 3679.5410 kcal/mol (3676.0676 without restraints) Performing minimization step: 1825. Total energy = 3677.1284 kcal/mol (3673.6554 without restraints) Performing minimization step: 1826. Total energy = 3674.7199 kcal/mol (3671.2474 without restraints) Performing minimization step: 1827. Total energy = 3672.3150 kcal/mol (3668.8427 without restraints) Performing minimization step: 1828. Total energy = 3669.9131 kcal/mol (3666.4412 without restraints) Performing minimization step: 1829. Total energy = 3667.5146 kcal/mol (3664.0431 without restraints) Performing minimization step: 1830. Total energy = 3665.1195 kcal/mol (3661.6483 without restraints) Performing minimization step: 1831. Total energy = 3662.7278 kcal/mol (3659.2570 without restraints) Performing minimization step: 1832. Total energy = 3660.3394 kcal/mol (3656.8691 without restraints) Performing minimization step: 1833. Total energy = 3657.9546 kcal/mol (3654.4845 without restraints) Performing minimization step: 1834. Total energy = 3655.5731 kcal/mol (3652.1034 without restraints) Performing minimization step: 1835. Total energy = 3653.1949 kcal/mol (3649.7256 without restraints) Performing minimization step: 1836. Total energy = 3650.8201 kcal/mol (3647.3512 without restraints) Performing minimization step: 1837. Total energy = 3648.4486 kcal/mol (3644.9801 without restraints) Performing minimization step: 1838. Total energy = 3646.0806 kcal/mol (3642.6124 without restraints) Performing minimization step: 1839. Total energy = 3643.7160 kcal/mol (3640.2481 without restraints) Performing minimization step: 1840. Total energy = 3641.3545 kcal/mol (3637.8871 without restraints) Performing minimization step: 1841. Total energy = 3638.9965 kcal/mol (3635.5294 without restraints) Performing minimization step: 1842. Total energy = 3636.6419 kcal/mol (3633.1752 without restraints) Performing minimization step: 1843. Total energy = 3634.2905 kcal/mol (3630.8241 without restraints) Performing minimization step: 1844. Total energy = 3631.9427 kcal/mol (3628.4766 without restraints) Performing minimization step: 1845. Total energy = 3629.5979 kcal/mol (3626.1322 without restraints) Performing minimization step: 1846. Total energy = 3627.2564 kcal/mol (3623.7911 without restraints) Performing minimization step: 1847. Total energy = 3624.9186 kcal/mol (3621.4537 without restraints) Performing minimization step: 1848. Total energy = 3622.5837 kcal/mol (3619.1190 without restraints) Performing minimization step: 1849. Total energy = 3620.2523 kcal/mol (3616.7880 without restraints) Performing minimization step: 1850. Total energy = 3617.9240 kcal/mol (3614.4602 without restraints) Performing minimization step: 1851. Total energy = 3615.5991 kcal/mol (3612.1356 without restraints) Performing minimization step: 1852. Total energy = 3613.2775 kcal/mol (3609.8143 without restraints) Performing minimization step: 1853. Total energy = 3610.9592 kcal/mol (3607.4965 without restraints) Performing minimization step: 1854. Total energy = 3608.6440 kcal/mol (3605.1815 without restraints) Performing minimization step: 1855. Total energy = 3606.3319 kcal/mol (3602.8698 without restraints) Performing minimization step: 1856. Total energy = 3604.0229 kcal/mol (3600.5611 without restraints) Performing minimization step: 1857. Total energy = 3601.7172 kcal/mol (3598.2556 without restraints) Performing minimization step: 1858. Total energy = 3599.4146 kcal/mol (3595.9535 without restraints) Performing minimization step: 1859. Total energy = 3597.1156 kcal/mol (3593.6549 without restraints) Performing minimization step: 1860. Total energy = 3594.8194 kcal/mol (3591.3591 without restraints) Performing minimization step: 1861. Total energy = 3592.5268 kcal/mol (3589.0668 without restraints) Performing minimization step: 1862. Total energy = 3590.2375 kcal/mol (3586.7778 without restraints) Performing minimization step: 1863. Total energy = 3587.9512 kcal/mol (3584.4919 without restraints) Performing minimization step: 1864. Total energy = 3585.6683 kcal/mol (3582.2093 without restraints) Performing minimization step: 1865. Total energy = 3583.3887 kcal/mol (3579.9300 without restraints) Performing minimization step: 1866. Total energy = 3581.1118 kcal/mol (3577.6535 without restraints) Performing minimization step: 1867. Total energy = 3578.8384 kcal/mol (3575.3805 without restraints) Performing minimization step: 1868. Total energy = 3576.5680 kcal/mol (3573.1104 without restraints) Performing minimization step: 1869. Total energy = 3574.3011 kcal/mol (3570.8440 without restraints) Performing minimization step: 1870. Total energy = 3572.0372 kcal/mol (3568.5802 without restraints) Performing minimization step: 1871. Total energy = 3569.7762 kcal/mol (3566.3196 without restraints) Performing minimization step: 1872. Total energy = 3567.5184 kcal/mol (3564.0622 without restraints) Performing minimization step: 1873. Total energy = 3565.2635 kcal/mol (3561.8076 without restraints) Performing minimization step: 1874. Total energy = 3563.0122 kcal/mol (3559.5566 without restraints) Performing minimization step: 1875. Total energy = 3560.7638 kcal/mol (3557.3086 without restraints) Performing minimization step: 1876. Total energy = 3558.5182 kcal/mol (3555.0634 without restraints) Performing minimization step: 1877. Total energy = 3556.2757 kcal/mol (3552.8212 without restraints) Performing minimization step: 1878. Total energy = 3554.0366 kcal/mol (3550.5824 without restraints) Performing minimization step: 1879. Total energy = 3551.8007 kcal/mol (3548.3468 without restraints) Performing minimization step: 1880. Total energy = 3549.5682 kcal/mol (3546.1147 without restraints) Performing minimization step: 1881. Total energy = 3547.3387 kcal/mol (3543.8855 without restraints) Performing minimization step: 1882. Total energy = 3545.1122 kcal/mol (3541.6594 without restraints) Performing minimization step: 1883. Total energy = 3542.8888 kcal/mol (3539.4363 without restraints) Performing minimization step: 1884. Total energy = 3540.6683 kcal/mol (3537.2162 without restraints) Performing minimization step: 1885. Total energy = 3538.4512 kcal/mol (3534.9994 without restraints) Performing minimization step: 1886. Total energy = 3536.2368 kcal/mol (3532.7853 without restraints) Performing minimization step: 1887. Total energy = 3534.0255 kcal/mol (3530.5743 without restraints) Performing minimization step: 1888. Total energy = 3531.8175 kcal/mol (3528.3666 without restraints) Performing minimization step: 1889. Total energy = 3529.6124 kcal/mol (3526.1620 without restraints) Performing minimization step: 1890. Total energy = 3527.4101 kcal/mol (3523.9599 without restraints) Performing minimization step: 1891. Total energy = 3525.2110 kcal/mol (3521.7613 without restraints) Performing minimization step: 1892. Total energy = 3523.0149 kcal/mol (3519.5653 without restraints) Performing minimization step: 1893. Total energy = 3520.8218 kcal/mol (3517.3726 without restraints) Performing minimization step: 1894. Total energy = 3518.6321 kcal/mol (3515.1833 without restraints) Performing minimization step: 1895. Total energy = 3516.4451 kcal/mol (3512.9966 without restraints) Performing minimization step: 1896. Total energy = 3514.2611 kcal/mol (3510.8129 without restraints) Performing minimization step: 1897. Total energy = 3512.0801 kcal/mol (3508.6322 without restraints) Performing minimization step: 1898. Total energy = 3509.9019 kcal/mol (3506.4543 without restraints) Performing minimization step: 1899. Total energy = 3507.7268 kcal/mol (3504.2795 without restraints) Performing minimization step: 1900. Total energy = 3505.5546 kcal/mol (3502.1077 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 3503.3856 kcal/mol (3499.9390 without restraints) Performing minimization step: 1902. Total energy = 3501.2197 kcal/mol (3497.7735 without restraints) Performing minimization step: 1903. Total energy = 3499.0567 kcal/mol (3495.6108 without restraints) Performing minimization step: 1904. Total energy = 3496.8973 kcal/mol (3493.4517 without restraints) Performing minimization step: 1905. Total energy = 3494.7401 kcal/mol (3491.2948 without restraints) Performing minimization step: 1906. Total energy = 3492.5858 kcal/mol (3489.1407 without restraints) Performing minimization step: 1907. Total energy = 3490.4348 kcal/mol (3486.9902 without restraints) Performing minimization step: 1908. Total energy = 3488.2868 kcal/mol (3484.8425 without restraints) Performing minimization step: 1909. Total energy = 3486.1414 kcal/mol (3482.6974 without restraints) Performing minimization step: 1910. Total energy = 3483.9990 kcal/mol (3480.5553 without restraints) Performing minimization step: 1911. Total energy = 3481.8595 kcal/mol (3478.4161 without restraints) Performing minimization step: 1912. Total energy = 3479.7230 kcal/mol (3476.2800 without restraints) Performing minimization step: 1913. Total energy = 3477.5894 kcal/mol (3474.1467 without restraints) Performing minimization step: 1914. Total energy = 3475.4587 kcal/mol (3472.0163 without restraints) Performing minimization step: 1915. Total energy = 3473.3307 kcal/mol (3469.8886 without restraints) Performing minimization step: 1916. Total energy = 3471.2062 kcal/mol (3467.7644 without restraints) Performing minimization step: 1917. Total energy = 3469.0840 kcal/mol (3465.6425 without restraints) Performing minimization step: 1918. Total energy = 3466.9651 kcal/mol (3463.5239 without restraints) Performing minimization step: 1919. Total energy = 3464.8488 kcal/mol (3461.4080 without restraints) Performing minimization step: 1920. Total energy = 3462.7357 kcal/mol (3459.2954 without restraints) Performing minimization step: 1921. Total energy = 3460.6254 kcal/mol (3457.1852 without restraints) Performing minimization step: 1922. Total energy = 3458.5179 kcal/mol (3455.0781 without restraints) Performing minimization step: 1923. Total energy = 3456.4133 kcal/mol (3452.9739 without restraints) Performing minimization step: 1924. Total energy = 3454.3113 kcal/mol (3450.8721 without restraints) Performing minimization step: 1925. Total energy = 3452.2125 kcal/mol (3448.7736 without restraints) Performing minimization step: 1926. Total energy = 3450.1164 kcal/mol (3446.6778 without restraints) Performing minimization step: 1927. Total energy = 3448.0231 kcal/mol (3444.5848 without restraints) Performing minimization step: 1928. Total energy = 3445.9325 kcal/mol (3442.4945 without restraints) Performing minimization step: 1929. Total energy = 3443.8452 kcal/mol (3440.4075 without restraints) Performing minimization step: 1930. Total energy = 3441.7607 kcal/mol (3438.3233 without restraints) Performing minimization step: 1931. Total energy = 3439.6787 kcal/mol (3436.2416 without restraints) Performing minimization step: 1932. Total energy = 3437.5996 kcal/mol (3434.1627 without restraints) Performing minimization step: 1933. Total energy = 3435.5232 kcal/mol (3432.0868 without restraints) Performing minimization step: 1934. Total energy = 3433.4497 kcal/mol (3430.0136 without restraints) Performing minimization step: 1935. Total energy = 3431.3789 kcal/mol (3427.9431 without restraints) Performing minimization step: 1936. Total energy = 3429.3116 kcal/mol (3425.8760 without restraints) Performing minimization step: 1937. Total energy = 3427.2466 kcal/mol (3423.8113 without restraints) Performing minimization step: 1938. Total energy = 3425.1839 kcal/mol (3421.7490 without restraints) Performing minimization step: 1939. Total energy = 3423.1244 kcal/mol (3419.6898 without restraints) Performing minimization step: 1940. Total energy = 3421.0680 kcal/mol (3417.6337 without restraints) Performing minimization step: 1941. Total energy = 3419.0144 kcal/mol (3415.5805 without restraints) Performing minimization step: 1942. Total energy = 3416.9634 kcal/mol (3413.5297 without restraints) Performing minimization step: 1943. Total energy = 3414.9153 kcal/mol (3411.4819 without restraints) Performing minimization step: 1944. Total energy = 3412.8697 kcal/mol (3409.4367 without restraints) Performing minimization step: 1945. Total energy = 3410.8271 kcal/mol (3407.3944 without restraints) Performing minimization step: 1946. Total energy = 3408.7878 kcal/mol (3405.3553 without restraints) Performing minimization step: 1947. Total energy = 3406.7505 kcal/mol (3403.3184 without restraints) Performing minimization step: 1948. Total energy = 3404.7158 kcal/mol (3401.2839 without restraints) Performing minimization step: 1949. Total energy = 3402.6842 kcal/mol (3399.2527 without restraints) Performing minimization step: 1950. Total energy = 3400.6554 kcal/mol (3397.2241 without restraints) Performing minimization step: 1951. Total energy = 3398.6289 kcal/mol (3395.1979 without restraints) Performing minimization step: 1952. Total energy = 3396.6053 kcal/mol (3393.1746 without restraints) Performing minimization step: 1953. Total energy = 3394.5849 kcal/mol (3391.1548 without restraints) Performing minimization step: 1954. Total energy = 3392.5673 kcal/mol (3389.1373 without restraints) Performing minimization step: 1955. Total energy = 3390.5518 kcal/mol (3387.1222 without restraints) Performing minimization step: 1956. Total energy = 3388.5392 kcal/mol (3385.1098 without restraints) Performing minimization step: 1957. Total energy = 3386.5290 kcal/mol (3383.0999 without restraints) Performing minimization step: 1958. Total energy = 3384.5217 kcal/mol (3381.0929 without restraints) Performing minimization step: 1959. Total energy = 3382.5173 kcal/mol (3379.0888 without restraints) Performing minimization step: 1960. Total energy = 3380.5155 kcal/mol (3377.0872 without restraints) Performing minimization step: 1961. Total energy = 3378.5163 kcal/mol (3375.0884 without restraints) Performing minimization step: 1962. Total energy = 3376.5201 kcal/mol (3373.0924 without restraints) Performing minimization step: 1963. Total energy = 3374.5261 kcal/mol (3371.0987 without restraints) Performing minimization step: 1964. Total energy = 3372.5352 kcal/mol (3369.1082 without restraints) Performing minimization step: 1965. Total energy = 3370.5468 kcal/mol (3367.1200 without restraints) Performing minimization step: 1966. Total energy = 3368.5611 kcal/mol (3365.1346 without restraints) Performing minimization step: 1967. Total energy = 3366.5780 kcal/mol (3363.1518 without restraints) Performing minimization step: 1968. Total energy = 3364.5976 kcal/mol (3361.1718 without restraints) Performing minimization step: 1969. Total energy = 3362.6199 kcal/mol (3359.1943 without restraints) Performing minimization step: 1970. Total energy = 3360.6448 kcal/mol (3357.2195 without restraints) Performing minimization step: 1971. Total energy = 3358.6723 kcal/mol (3355.2472 without restraints) Performing minimization step: 1972. Total energy = 3356.7024 kcal/mol (3353.2777 without restraints) Performing minimization step: 1973. Total energy = 3354.7352 kcal/mol (3351.3108 without restraints) Performing minimization step: 1974. Total energy = 3352.7711 kcal/mol (3349.3469 without restraints) Performing minimization step: 1975. Total energy = 3350.8098 kcal/mol (3347.3860 without restraints) Performing minimization step: 1976. Total energy = 3348.8505 kcal/mol (3345.4270 without restraints) Performing minimization step: 1977. Total energy = 3346.8939 kcal/mol (3343.4707 without restraints) Performing minimization step: 1978. Total energy = 3344.9399 kcal/mol (3341.5169 without restraints) Performing minimization step: 1979. Total energy = 3342.9884 kcal/mol (3339.5657 without restraints) Performing minimization step: 1980. Total energy = 3341.0395 kcal/mol (3337.6171 without restraints) Performing minimization step: 1981. Total energy = 3339.0933 kcal/mol (3335.6713 without restraints) Performing minimization step: 1982. Total energy = 3337.1497 kcal/mol (3333.7279 without restraints) Performing minimization step: 1983. Total energy = 3335.2086 kcal/mol (3331.7870 without restraints) Performing minimization step: 1984. Total energy = 3333.2701 kcal/mol (3329.8489 without restraints) Performing minimization step: 1985. Total energy = 3331.3344 kcal/mol (3327.9134 without restraints) Performing minimization step: 1986. Total energy = 3329.4010 kcal/mol (3325.9803 without restraints) Performing minimization step: 1987. Total energy = 3327.4702 kcal/mol (3324.0497 without restraints) Performing minimization step: 1988. Total energy = 3325.5418 kcal/mol (3322.1217 without restraints) Performing minimization step: 1989. Total energy = 3323.6161 kcal/mol (3320.1963 without restraints) Performing minimization step: 1990. Total energy = 3321.6932 kcal/mol (3318.2738 without restraints) Performing minimization step: 1991. Total energy = 3319.7728 kcal/mol (3316.3536 without restraints) Performing minimization step: 1992. Total energy = 3317.8546 kcal/mol (3314.4357 without restraints) Performing minimization step: 1993. Total energy = 3315.9395 kcal/mol (3312.5208 without restraints) Performing minimization step: 1994. Total energy = 3314.0266 kcal/mol (3310.6082 without restraints) Performing minimization step: 1995. Total energy = 3312.1163 kcal/mol (3308.6982 without restraints) Performing minimization step: 1996. Total energy = 3310.2085 kcal/mol (3306.7907 without restraints) Performing minimization step: 1997. Total energy = 3308.3033 kcal/mol (3304.8857 without restraints) Performing minimization step: 1998. Total energy = 3306.4007 kcal/mol (3302.9835 without restraints) Performing minimization step: 1999. Total energy = 3304.5015 kcal/mol (3301.0845 without restraints) Performing minimization step: 2000. Total energy = 3302.6036 kcal/mol (3299.1869 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 3300.7089 kcal/mol (3297.2925 without restraints) Performing minimization step: 2002. Total energy = 3298.8162 kcal/mol (3295.4001 without restraints) Performing minimization step: 2003. Total energy = 3296.9263 kcal/mol (3293.5105 without restraints) Performing minimization step: 2004. Total energy = 3295.0388 kcal/mol (3291.6232 without restraints) Performing minimization step: 2005. Total energy = 3293.1538 kcal/mol (3289.7386 without restraints) Performing minimization step: 2006. Total energy = 3291.2713 kcal/mol (3287.8563 without restraints) Performing minimization step: 2007. Total energy = 3289.3910 kcal/mol (3285.9763 without restraints) Performing minimization step: 2008. Total energy = 3287.5136 kcal/mol (3284.0992 without restraints) Performing minimization step: 2009. Total energy = 3285.6384 kcal/mol (3282.2241 without restraints) Performing minimization step: 2010. Total energy = 3283.7657 kcal/mol (3280.3518 without restraints) Performing minimization step: 2011. Total energy = 3281.8958 kcal/mol (3278.4822 without restraints) Performing minimization step: 2012. Total energy = 3280.0277 kcal/mol (3276.6144 without restraints) Performing minimization step: 2013. Total energy = 3278.1627 kcal/mol (3274.7497 without restraints) Performing minimization step: 2014. Total energy = 3276.3003 kcal/mol (3272.8875 without restraints) Performing minimization step: 2015. Total energy = 3274.4400 kcal/mol (3271.0275 without restraints) Performing minimization step: 2016. Total energy = 3272.5822 kcal/mol (3269.1700 without restraints) Performing minimization step: 2017. Total energy = 3270.7266 kcal/mol (3267.3147 without restraints) Performing minimization step: 2018. Total energy = 3268.8739 kcal/mol (3265.4623 without restraints) Performing minimization step: 2019. Total energy = 3267.0234 kcal/mol (3263.6119 without restraints) Performing minimization step: 2020. Total energy = 3265.1754 kcal/mol (3261.7644 without restraints) Performing minimization step: 2021. Total energy = 3263.3301 kcal/mol (3259.9193 without restraints) Performing minimization step: 2022. Total energy = 3261.4871 kcal/mol (3258.0766 without restraints) Performing minimization step: 2023. Total energy = 3259.6464 kcal/mol (3256.2362 without restraints) Performing minimization step: 2024. Total energy = 3257.8086 kcal/mol (3254.3986 without restraints) Performing minimization step: 2025. Total energy = 3255.9734 kcal/mol (3252.5637 without restraints) Performing minimization step: 2026. Total energy = 3254.1402 kcal/mol (3250.7308 without restraints) Performing minimization step: 2027. Total energy = 3252.3097 kcal/mol (3248.9005 without restraints) Performing minimization step: 2028. Total energy = 3250.4817 kcal/mol (3247.0729 without restraints) Performing minimization step: 2029. Total energy = 3248.6558 kcal/mol (3245.2471 without restraints) Performing minimization step: 2030. Total energy = 3246.8319 kcal/mol (3243.4236 without restraints) Performing minimization step: 2031. Total energy = 3245.0102 kcal/mol (3241.6021 without restraints) Performing minimization step: 2032. Total energy = 3243.1911 kcal/mol (3239.7834 without restraints) Performing minimization step: 2033. Total energy = 3241.3745 kcal/mol (3237.9670 without restraints) Performing minimization step: 2034. Total energy = 3239.5605 kcal/mol (3236.1533 without restraints) Performing minimization step: 2035. Total energy = 3237.7486 kcal/mol (3234.3418 without restraints) Performing minimization step: 2036. Total energy = 3235.9396 kcal/mol (3232.5329 without restraints) Performing minimization step: 2037. Total energy = 3234.1323 kcal/mol (3230.7259 without restraints) Performing minimization step: 2038. Total energy = 3232.3274 kcal/mol (3228.9213 without restraints) Performing minimization step: 2039. Total energy = 3230.5249 kcal/mol (3227.1191 without restraints) Performing minimization step: 2040. Total energy = 3228.7250 kcal/mol (3225.3194 without restraints) Performing minimization step: 2041. Total energy = 3226.9274 kcal/mol (3223.5221 without restraints) Performing minimization step: 2042. Total energy = 3225.1322 kcal/mol (3221.7271 without restraints) Performing minimization step: 2043. Total energy = 3223.3393 kcal/mol (3219.9345 without restraints) Performing minimization step: 2044. Total energy = 3221.5488 kcal/mol (3218.1443 without restraints) Performing minimization step: 2045. Total energy = 3219.7605 kcal/mol (3216.3562 without restraints) Performing minimization step: 2046. Total energy = 3217.9746 kcal/mol (3214.5707 without restraints) Performing minimization step: 2047. Total energy = 3216.1912 kcal/mol (3212.7875 without restraints) Performing minimization step: 2048. Total energy = 3214.4101 kcal/mol (3211.0067 without restraints) Performing minimization step: 2049. Total energy = 3212.6312 kcal/mol (3209.2281 without restraints) Performing minimization step: 2050. Total energy = 3210.8550 kcal/mol (3207.4521 without restraints) Performing minimization step: 2051. Total energy = 3209.0810 kcal/mol (3205.6784 without restraints) Performing minimization step: 2052. Total energy = 3207.3093 kcal/mol (3203.9069 without restraints) Performing minimization step: 2053. Total energy = 3205.5397 kcal/mol (3202.1374 without restraints) Performing minimization step: 2054. Total energy = 3203.7725 kcal/mol (3200.3707 without restraints) Performing minimization step: 2055. Total energy = 3202.0076 kcal/mol (3198.6061 without restraints) Performing minimization step: 2056. Total energy = 3200.2451 kcal/mol (3196.8438 without restraints) Performing minimization step: 2057. Total energy = 3198.4849 kcal/mol (3195.0839 without restraints) Performing minimization step: 2058. Total energy = 3196.7270 kcal/mol (3193.3262 without restraints) Performing minimization step: 2059. Total energy = 3194.9711 kcal/mol (3191.5707 without restraints) Performing minimization step: 2060. Total energy = 3193.2173 kcal/mol (3189.8170 without restraints) Performing minimization step: 2061. Total energy = 3191.4662 kcal/mol (3188.0662 without restraints) Performing minimization step: 2062. Total energy = 3189.7174 kcal/mol (3186.3178 without restraints) Performing minimization step: 2063. Total energy = 3187.9710 kcal/mol (3184.5716 without restraints) Performing minimization step: 2064. Total energy = 3186.2268 kcal/mol (3182.8277 without restraints) Performing minimization step: 2065. Total energy = 3184.4850 kcal/mol (3181.0861 without restraints) Performing minimization step: 2066. Total energy = 3182.7455 kcal/mol (3179.3469 without restraints) Performing minimization step: 2067. Total energy = 3181.0082 kcal/mol (3177.6099 without restraints) Performing minimization step: 2068. Total energy = 3179.2732 kcal/mol (3175.8751 without restraints) Performing minimization step: 2069. Total energy = 3177.5405 kcal/mol (3174.1429 without restraints) Performing minimization step: 2070. Total energy = 3175.8099 kcal/mol (3172.4124 without restraints) Performing minimization step: 2071. Total energy = 3174.0816 kcal/mol (3170.6844 without restraints) Performing minimization step: 2072. Total energy = 3172.3558 kcal/mol (3168.9588 without restraints) Performing minimization step: 2073. Total energy = 3170.6320 kcal/mol (3167.2353 without restraints) Performing minimization step: 2074. Total energy = 3168.9104 kcal/mol (3165.5140 without restraints) Performing minimization step: 2075. Total energy = 3167.1911 kcal/mol (3163.7949 without restraints) Performing minimization step: 2076. Total energy = 3165.4740 kcal/mol (3162.0780 without restraints) Performing minimization step: 2077. Total energy = 3163.7589 kcal/mol (3160.3633 without restraints) Performing minimization step: 2078. Total energy = 3162.0461 kcal/mol (3158.6507 without restraints) Performing minimization step: 2079. Total energy = 3160.3357 kcal/mol (3156.9405 without restraints) Performing minimization step: 2080. Total energy = 3158.6276 kcal/mol (3155.2327 without restraints) Performing minimization step: 2081. Total energy = 3156.9217 kcal/mol (3153.5271 without restraints) Performing minimization step: 2082. Total energy = 3155.2180 kcal/mol (3151.8237 without restraints) Performing minimization step: 2083. Total energy = 3153.5169 kcal/mol (3150.1229 without restraints) Performing minimization step: 2084. Total energy = 3151.8179 kcal/mol (3148.4241 without restraints) Performing minimization step: 2085. Total energy = 3150.1214 kcal/mol (3146.7278 without restraints) Performing minimization step: 2086. Total energy = 3148.4266 kcal/mol (3145.0333 without restraints) Performing minimization step: 2087. Total energy = 3146.7340 kcal/mol (3143.3409 without restraints) Performing minimization step: 2088. Total energy = 3145.0436 kcal/mol (3141.6508 without restraints) Performing minimization step: 2089. Total energy = 3143.3554 kcal/mol (3139.9628 without restraints) Performing minimization step: 2090. Total energy = 3141.6692 kcal/mol (3138.2769 without restraints) Performing minimization step: 2091. Total energy = 3139.9854 kcal/mol (3136.5934 without restraints) Performing minimization step: 2092. Total energy = 3138.3036 kcal/mol (3134.9118 without restraints) Performing minimization step: 2093. Total energy = 3136.6240 kcal/mol (3133.2325 without restraints) Performing minimization step: 2094. Total energy = 3134.9470 kcal/mol (3131.5557 without restraints) Performing minimization step: 2095. Total energy = 3133.2721 kcal/mol (3129.8812 without restraints) Performing minimization step: 2096. Total energy = 3131.5994 kcal/mol (3128.2087 without restraints) Performing minimization step: 2097. Total energy = 3129.9287 kcal/mol (3126.5383 without restraints) Performing minimization step: 2098. Total energy = 3128.2600 kcal/mol (3124.8697 without restraints) Performing minimization step: 2099. Total energy = 3126.5932 kcal/mol (3123.2033 without restraints) Performing minimization step: 2100. Total energy = 3124.9289 kcal/mol (3121.5393 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 3123.2668 kcal/mol (3119.8774 without restraints) Performing minimization step: 2102. Total energy = 3121.6068 kcal/mol (3118.2176 without restraints) Performing minimization step: 2103. Total energy = 3119.9489 kcal/mol (3116.5600 without restraints) Performing minimization step: 2104. Total energy = 3118.2937 kcal/mol (3114.9051 without restraints) Performing minimization step: 2105. Total energy = 3116.6408 kcal/mol (3113.2524 without restraints) Performing minimization step: 2106. Total energy = 3114.9892 kcal/mol (3111.6012 without restraints) Performing minimization step: 2107. Total energy = 3113.3400 kcal/mol (3109.9522 without restraints) Performing minimization step: 2108. Total energy = 3111.6929 kcal/mol (3108.3054 without restraints) Performing minimization step: 2109. Total energy = 3110.0477 kcal/mol (3106.6604 without restraints) Performing minimization step: 2110. Total energy = 3108.4049 kcal/mol (3105.0179 without restraints) Performing minimization step: 2111. Total energy = 3106.7649 kcal/mol (3103.3782 without restraints) Performing minimization step: 2112. Total energy = 3105.1264 kcal/mol (3101.7398 without restraints) Performing minimization step: 2113. Total energy = 3103.4899 kcal/mol (3100.1036 without restraints) Performing minimization step: 2114. Total energy = 3101.8555 kcal/mol (3098.4695 without restraints) Performing minimization step: 2115. Total energy = 3100.2233 kcal/mol (3096.8375 without restraints) Performing minimization step: 2116. Total energy = 3098.5932 kcal/mol (3095.2077 without restraints) Performing minimization step: 2117. Total energy = 3096.9650 kcal/mol (3093.5797 without restraints) Performing minimization step: 2118. Total energy = 3095.3391 kcal/mol (3091.9541 without restraints) Performing minimization step: 2119. Total energy = 3093.7153 kcal/mol (3090.3306 without restraints) Performing minimization step: 2120. Total energy = 3092.0936 kcal/mol (3088.7092 without restraints) Performing minimization step: 2121. Total energy = 3090.4741 kcal/mol (3087.0899 without restraints) Performing minimization step: 2122. Total energy = 3088.8565 kcal/mol (3085.4726 without restraints) Performing minimization step: 2123. Total energy = 3087.2416 kcal/mol (3083.8579 without restraints) Performing minimization step: 2124. Total energy = 3085.6284 kcal/mol (3082.2450 without restraints) Performing minimization step: 2125. Total energy = 3084.0172 kcal/mol (3080.6340 without restraints) Performing minimization step: 2126. Total energy = 3082.4085 kcal/mol (3079.0258 without restraints) Performing minimization step: 2127. Total energy = 3080.8014 kcal/mol (3077.4187 without restraints) Performing minimization step: 2128. Total energy = 3079.1963 kcal/mol (3075.8139 without restraints) Performing minimization step: 2129. Total energy = 3077.5935 kcal/mol (3074.2114 without restraints) Performing minimization step: 2130. Total energy = 3075.9926 kcal/mol (3072.6107 without restraints) Performing minimization step: 2131. Total energy = 3074.3938 kcal/mol (3071.0122 without restraints) Performing minimization step: 2132. Total energy = 3072.7970 kcal/mol (3069.4157 without restraints) Performing minimization step: 2133. Total energy = 3071.2024 kcal/mol (3067.8214 without restraints) Performing minimization step: 2134. Total energy = 3069.6099 kcal/mol (3066.2290 without restraints) Performing minimization step: 2135. Total energy = 3068.0193 kcal/mol (3064.6389 without restraints) Performing minimization step: 2136. Total energy = 3066.4311 kcal/mol (3063.0508 without restraints) Performing minimization step: 2137. Total energy = 3064.8446 kcal/mol (3061.4646 without restraints) Performing minimization step: 2138. Total energy = 3063.2604 kcal/mol (3059.8806 without restraints) Performing minimization step: 2139. Total energy = 3061.6781 kcal/mol (3058.2987 without restraints) Performing minimization step: 2140. Total energy = 3060.0981 kcal/mol (3056.7188 without restraints) Performing minimization step: 2141. Total energy = 3058.5198 kcal/mol (3055.1407 without restraints) Performing minimization step: 2142. Total energy = 3056.9435 kcal/mol (3053.5647 without restraints) Performing minimization step: 2143. Total energy = 3055.3694 kcal/mol (3051.9908 without restraints) Performing minimization step: 2144. Total energy = 3053.7972 kcal/mol (3050.4189 without restraints) Performing minimization step: 2145. Total energy = 3052.2270 kcal/mol (3048.8489 without restraints) Performing minimization step: 2146. Total energy = 3050.6587 kcal/mol (3047.2810 without restraints) Performing minimization step: 2147. Total energy = 3049.0928 kcal/mol (3045.7152 without restraints) Performing minimization step: 2148. Total energy = 3047.5286 kcal/mol (3044.1513 without restraints) Performing minimization step: 2149. Total energy = 3045.9664 kcal/mol (3042.5894 without restraints) Performing minimization step: 2150. Total energy = 3044.4062 kcal/mol (3041.0295 without restraints) Performing minimization step: 2151. Total energy = 3042.8482 kcal/mol (3039.4717 without restraints) Performing minimization step: 2152. Total energy = 3041.2922 kcal/mol (3037.9160 without restraints) Performing minimization step: 2153. Total energy = 3039.7380 kcal/mol (3036.3621 without restraints) Performing minimization step: 2154. Total energy = 3038.1857 kcal/mol (3034.8101 without restraints) Performing minimization step: 2155. Total energy = 3036.6358 kcal/mol (3033.2604 without restraints) Performing minimization step: 2156. Total energy = 3035.0877 kcal/mol (3031.7124 without restraints) Performing minimization step: 2157. Total energy = 3033.5415 kcal/mol (3030.1665 without restraints) Performing minimization step: 2158. Total energy = 3031.9973 kcal/mol (3028.6226 without restraints) Performing minimization step: 2159. Total energy = 3030.4551 kcal/mol (3027.0806 without restraints) Performing minimization step: 2160. Total energy = 3028.9150 kcal/mol (3025.5408 without restraints) Performing minimization step: 2161. Total energy = 3027.3768 kcal/mol (3024.0028 without restraints) Performing minimization step: 2162. Total energy = 3025.8403 kcal/mol (3022.4666 without restraints) Performing minimization step: 2163. Total energy = 3024.3060 kcal/mol (3020.9325 without restraints) Performing minimization step: 2164. Total energy = 3022.7736 kcal/mol (3019.4004 without restraints) Performing minimization step: 2165. Total energy = 3021.2432 kcal/mol (3017.8703 without restraints) Performing minimization step: 2166. Total energy = 3019.7148 kcal/mol (3016.3422 without restraints) Performing minimization step: 2167. Total energy = 3018.1883 kcal/mol (3014.8159 without restraints) Performing minimization step: 2168. Total energy = 3016.6638 kcal/mol (3013.2917 without restraints) Performing minimization step: 2169. Total energy = 3015.1413 kcal/mol (3011.7694 without restraints) Performing minimization step: 2170. Total energy = 3013.6207 kcal/mol (3010.2490 without restraints) Performing minimization step: 2171. Total energy = 3012.1020 kcal/mol (3008.7306 without restraints) Performing minimization step: 2172. Total energy = 3010.5853 kcal/mol (3007.2142 without restraints) Performing minimization step: 2173. Total energy = 3009.0705 kcal/mol (3005.6997 without restraints) Performing minimization step: 2174. Total energy = 3007.5575 kcal/mol (3004.1869 without restraints) Performing minimization step: 2175. Total energy = 3006.0466 kcal/mol (3002.6762 without restraints) Performing minimization step: 2176. Total energy = 3004.5379 kcal/mol (3001.1678 without restraints) Performing minimization step: 2177. Total energy = 3003.0311 kcal/mol (2999.6612 without restraints) Performing minimization step: 2178. Total energy = 3001.5260 kcal/mol (2998.1563 without restraints) Performing minimization step: 2179. Total energy = 3000.0228 kcal/mol (2996.6534 without restraints) Performing minimization step: 2180. Total energy = 2998.5214 kcal/mol (2995.1523 without restraints) Performing minimization step: 2181. Total energy = 2997.0226 kcal/mol (2993.6538 without restraints) Performing minimization step: 2182. Total energy = 2995.5252 kcal/mol (2992.1567 without restraints) Performing minimization step: 2183. Total energy = 2994.0302 kcal/mol (2990.6620 without restraints) Performing minimization step: 2184. Total energy = 2992.5372 kcal/mol (2989.1692 without restraints) Performing minimization step: 2185. Total energy = 2991.0456 kcal/mol (2987.6778 without restraints) Performing minimization step: 2186. Total energy = 2989.5561 kcal/mol (2986.1887 without restraints) Performing minimization step: 2187. Total energy = 2988.0692 kcal/mol (2984.7019 without restraints) Performing minimization step: 2188. Total energy = 2986.5830 kcal/mol (2983.2159 without restraints) Performing minimization step: 2189. Total energy = 2985.0987 kcal/mol (2981.7318 without restraints) Performing minimization step: 2190. Total energy = 2983.6165 kcal/mol (2980.2499 without restraints) Performing minimization step: 2191. Total energy = 2982.1362 kcal/mol (2978.7699 without restraints) Performing minimization step: 2192. Total energy = 2980.6578 kcal/mol (2977.2918 without restraints) Performing minimization step: 2193. Total energy = 2979.1815 kcal/mol (2975.8158 without restraints) Performing minimization step: 2194. Total energy = 2977.7071 kcal/mol (2974.3416 without restraints) Performing minimization step: 2195. Total energy = 2976.2344 kcal/mol (2972.8691 without restraints) Performing minimization step: 2196. Total energy = 2974.7636 kcal/mol (2971.3985 without restraints) Performing minimization step: 2197. Total energy = 2973.2946 kcal/mol (2969.9298 without restraints) Performing minimization step: 2198. Total energy = 2971.8275 kcal/mol (2968.4630 without restraints) Performing minimization step: 2199. Total energy = 2970.3623 kcal/mol (2966.9981 without restraints) Performing minimization step: 2200. Total energy = 2968.8989 kcal/mol (2965.5350 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 2967.4377 kcal/mol (2964.0739 without restraints) Performing minimization step: 2202. Total energy = 2965.9780 kcal/mol (2962.6146 without restraints) Performing minimization step: 2203. Total energy = 2964.5203 kcal/mol (2961.1570 without restraints) Performing minimization step: 2204. Total energy = 2963.0646 kcal/mol (2959.7016 without restraints) Performing minimization step: 2205. Total energy = 2961.6105 kcal/mol (2958.2478 without restraints) Performing minimization step: 2206. Total energy = 2960.1583 kcal/mol (2956.7959 without restraints) Performing minimization step: 2207. Total energy = 2958.7079 kcal/mol (2955.3457 without restraints) Performing minimization step: 2208. Total energy = 2957.2598 kcal/mol (2953.8977 without restraints) Performing minimization step: 2209. Total energy = 2955.8132 kcal/mol (2952.4515 without restraints) Performing minimization step: 2210. Total energy = 2954.3681 kcal/mol (2951.0067 without restraints) Performing minimization step: 2211. Total energy = 2952.9256 kcal/mol (2949.5644 without restraints) Performing minimization step: 2212. Total energy = 2951.4844 kcal/mol (2948.1235 without restraints) Performing minimization step: 2213. Total energy = 2950.0452 kcal/mol (2946.6845 without restraints) Performing minimization step: 2214. Total energy = 2948.6074 kcal/mol (2945.2469 without restraints) Performing minimization step: 2215. Total energy = 2947.1715 kcal/mol (2943.8111 without restraints) Performing minimization step: 2216. Total energy = 2945.7374 kcal/mol (2942.3775 without restraints) Performing minimization step: 2217. Total energy = 2944.3054 kcal/mol (2940.9458 without restraints) Performing minimization step: 2218. Total energy = 2942.8753 kcal/mol (2939.5159 without restraints) Performing minimization step: 2219. Total energy = 2941.4470 kcal/mol (2938.0878 without restraints) Performing minimization step: 2220. Total energy = 2940.0204 kcal/mol (2936.6615 without restraints) Performing minimization step: 2221. Total energy = 2938.5960 kcal/mol (2935.2374 without restraints) Performing minimization step: 2222. Total energy = 2937.1731 kcal/mol (2933.8148 without restraints) Performing minimization step: 2223. Total energy = 2935.7524 kcal/mol (2932.3943 without restraints) Performing minimization step: 2224. Total energy = 2934.3332 kcal/mol (2930.9754 without restraints) Performing minimization step: 2225. Total energy = 2932.9156 kcal/mol (2929.5580 without restraints) Performing minimization step: 2226. Total energy = 2931.4999 kcal/mol (2928.1425 without restraints) Performing minimization step: 2227. Total energy = 2930.0860 kcal/mol (2926.7289 without restraints) Performing minimization step: 2228. Total energy = 2928.6741 kcal/mol (2925.3173 without restraints) Performing minimization step: 2229. Total energy = 2927.2640 kcal/mol (2923.9075 without restraints) Performing minimization step: 2230. Total energy = 2925.8555 kcal/mol (2922.4992 without restraints) Performing minimization step: 2231. Total energy = 2924.4490 kcal/mol (2921.0929 without restraints) Performing minimization step: 2232. Total energy = 2923.0439 kcal/mol (2919.6880 without restraints) Performing minimization step: 2233. Total energy = 2921.6407 kcal/mol (2918.2852 without restraints) Performing minimization step: 2234. Total energy = 2920.2391 kcal/mol (2916.8838 without restraints) Performing minimization step: 2235. Total energy = 2918.8395 kcal/mol (2915.4845 without restraints) Performing minimization step: 2236. Total energy = 2917.4418 kcal/mol (2914.0871 without restraints) Performing minimization step: 2237. Total energy = 2916.0456 kcal/mol (2912.6911 without restraints) Performing minimization step: 2238. Total energy = 2914.6520 kcal/mol (2911.2979 without restraints) Performing minimization step: 2239. Total energy = 2913.2597 kcal/mol (2909.9058 without restraints) Performing minimization step: 2240. Total energy = 2911.8689 kcal/mol (2908.5152 without restraints) Performing minimization step: 2241. Total energy = 2910.4799 kcal/mol (2907.1264 without restraints) Performing minimization step: 2242. Total energy = 2909.0926 kcal/mol (2905.7394 without restraints) Performing minimization step: 2243. Total energy = 2907.7073 kcal/mol (2904.3544 without restraints) Performing minimization step: 2244. Total energy = 2906.3239 kcal/mol (2902.9712 without restraints) Performing minimization step: 2245. Total energy = 2904.9419 kcal/mol (2901.5895 without restraints) Performing minimization step: 2246. Total energy = 2903.5617 kcal/mol (2900.2095 without restraints) Performing minimization step: 2247. Total energy = 2902.1828 kcal/mol (2898.8308 without restraints) Performing minimization step: 2248. Total energy = 2900.8060 kcal/mol (2897.4543 without restraints) Performing minimization step: 2249. Total energy = 2899.4311 kcal/mol (2896.0796 without restraints) Performing minimization step: 2250. Total energy = 2898.0578 kcal/mol (2894.7066 without restraints) Performing minimization step: 2251. Total energy = 2896.6869 kcal/mol (2893.3361 without restraints) Performing minimization step: 2252. Total energy = 2895.3173 kcal/mol (2891.9666 without restraints) Performing minimization step: 2253. Total energy = 2893.9495 kcal/mol (2890.5991 without restraints) Performing minimization step: 2254. Total energy = 2892.5832 kcal/mol (2889.2331 without restraints) Performing minimization step: 2255. Total energy = 2891.2186 kcal/mol (2887.8687 without restraints) Performing minimization step: 2256. Total energy = 2889.8558 kcal/mol (2886.5062 without restraints) Performing minimization step: 2257. Total energy = 2888.4946 kcal/mol (2885.1453 without restraints) Performing minimization step: 2258. Total energy = 2887.1355 kcal/mol (2883.7864 without restraints) Performing minimization step: 2259. Total energy = 2885.7779 kcal/mol (2882.4290 without restraints) Performing minimization step: 2260. Total energy = 2884.4225 kcal/mol (2881.0740 without restraints) Performing minimization step: 2261. Total energy = 2883.0687 kcal/mol (2879.7203 without restraints) Performing minimization step: 2262. Total energy = 2881.7159 kcal/mol (2878.3678 without restraints) Performing minimization step: 2263. Total energy = 2880.3651 kcal/mol (2877.0172 without restraints) Performing minimization step: 2264. Total energy = 2879.0157 kcal/mol (2875.6681 without restraints) Performing minimization step: 2265. Total energy = 2877.6685 kcal/mol (2874.3214 without restraints) Performing minimization step: 2266. Total energy = 2876.3230 kcal/mol (2872.9760 without restraints) Performing minimization step: 2267. Total energy = 2874.9788 kcal/mol (2871.6320 without restraints) Performing minimization step: 2268. Total energy = 2873.6364 kcal/mol (2870.2899 without restraints) Performing minimization step: 2269. Total energy = 2872.2959 kcal/mol (2868.9497 without restraints) Performing minimization step: 2270. Total energy = 2870.9570 kcal/mol (2867.6108 without restraints) Performing minimization step: 2271. Total energy = 2869.6196 kcal/mol (2866.2739 without restraints) Performing minimization step: 2272. Total energy = 2868.2835 kcal/mol (2864.9380 without restraints) Performing minimization step: 2273. Total energy = 2866.9494 kcal/mol (2863.6042 without restraints) Performing minimization step: 2274. Total energy = 2865.6177 kcal/mol (2862.2727 without restraints) Performing minimization step: 2275. Total energy = 2864.2873 kcal/mol (2860.9428 without restraints) Performing minimization step: 2276. Total energy = 2862.9591 kcal/mol (2859.6147 without restraints) Performing minimization step: 2277. Total energy = 2861.6321 kcal/mol (2858.2879 without restraints) Performing minimization step: 2278. Total energy = 2860.3067 kcal/mol (2856.9629 without restraints) Performing minimization step: 2279. Total energy = 2858.9830 kcal/mol (2855.6393 without restraints) Performing minimization step: 2280. Total energy = 2857.6609 kcal/mol (2854.3177 without restraints) Performing minimization step: 2281. Total energy = 2856.3405 kcal/mol (2852.9974 without restraints) Performing minimization step: 2282. Total energy = 2855.0217 kcal/mol (2851.6788 without restraints) Performing minimization step: 2283. Total energy = 2853.7045 kcal/mol (2850.3619 without restraints) Performing minimization step: 2284. Total energy = 2852.3893 kcal/mol (2849.0471 without restraints) Performing minimization step: 2285. Total energy = 2851.0756 kcal/mol (2847.7335 without restraints) Performing minimization step: 2286. Total energy = 2849.7634 kcal/mol (2846.4216 without restraints) Performing minimization step: 2287. Total energy = 2848.4526 kcal/mol (2845.1110 without restraints) Performing minimization step: 2288. Total energy = 2847.1436 kcal/mol (2843.8024 without restraints) Performing minimization step: 2289. Total energy = 2845.8364 kcal/mol (2842.4954 without restraints) Performing minimization step: 2290. Total energy = 2844.5309 kcal/mol (2841.1901 without restraints) Performing minimization step: 2291. Total energy = 2843.2269 kcal/mol (2839.8864 without restraints) Performing minimization step: 2292. Total energy = 2841.9246 kcal/mol (2838.5843 without restraints) Performing minimization step: 2293. Total energy = 2840.6238 kcal/mol (2837.2837 without restraints) Performing minimization step: 2294. Total energy = 2839.3246 kcal/mol (2835.9849 without restraints) Performing minimization step: 2295. Total energy = 2838.0272 kcal/mol (2834.6877 without restraints) Performing minimization step: 2296. Total energy = 2836.7314 kcal/mol (2833.3922 without restraints) Performing minimization step: 2297. Total energy = 2835.4372 kcal/mol (2832.0983 without restraints) Performing minimization step: 2298. Total energy = 2834.1445 kcal/mol (2830.8058 without restraints) Performing minimization step: 2299. Total energy = 2832.8533 kcal/mol (2829.5150 without restraints) Performing minimization step: 2300. Total energy = 2831.5638 kcal/mol (2828.2257 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 2830.2761 kcal/mol (2826.9382 without restraints) Performing minimization step: 2302. Total energy = 2828.9900 kcal/mol (2825.6524 without restraints) Performing minimization step: 2303. Total energy = 2827.7056 kcal/mol (2824.3682 without restraints) Performing minimization step: 2304. Total energy = 2826.4227 kcal/mol (2823.0857 without restraints) Performing minimization step: 2305. Total energy = 2825.1415 kcal/mol (2821.8047 without restraints) Performing minimization step: 2306. Total energy = 2823.8620 kcal/mol (2820.5254 without restraints) Performing minimization step: 2307. Total energy = 2822.5840 kcal/mol (2819.2477 without restraints) Performing minimization step: 2308. Total energy = 2821.3078 kcal/mol (2817.9718 without restraints) Performing minimization step: 2309. Total energy = 2820.0329 kcal/mol (2816.6970 without restraints) Performing minimization step: 2310. Total energy = 2818.7596 kcal/mol (2815.4241 without restraints) Performing minimization step: 2311. Total energy = 2817.4882 kcal/mol (2814.1529 without restraints) Performing minimization step: 2312. Total energy = 2816.2179 kcal/mol (2812.8830 without restraints) Performing minimization step: 2313. Total energy = 2814.9494 kcal/mol (2811.6148 without restraints) Performing minimization step: 2314. Total energy = 2813.6827 kcal/mol (2810.3483 without restraints) Performing minimization step: 2315. Total energy = 2812.4177 kcal/mol (2809.0835 without restraints) Performing minimization step: 2316. Total energy = 2811.1540 kcal/mol (2807.8202 without restraints) Performing minimization step: 2317. Total energy = 2809.8921 kcal/mol (2806.5585 without restraints) Performing minimization step: 2318. Total energy = 2808.6319 kcal/mol (2805.2986 without restraints) Performing minimization step: 2319. Total energy = 2807.3728 kcal/mol (2804.0397 without restraints) Performing minimization step: 2320. Total energy = 2806.1158 kcal/mol (2802.7830 without restraints) Performing minimization step: 2321. Total energy = 2804.8598 kcal/mol (2801.5273 without restraints) Performing minimization step: 2322. Total energy = 2803.6056 kcal/mol (2800.2733 without restraints) Performing minimization step: 2323. Total energy = 2802.3530 kcal/mol (2799.0210 without restraints) Performing minimization step: 2324. Total energy = 2801.1023 kcal/mol (2797.7706 without restraints) Performing minimization step: 2325. Total energy = 2799.8527 kcal/mol (2796.5214 without restraints) Performing minimization step: 2326. Total energy = 2798.6051 kcal/mol (2795.2739 without restraints) Performing minimization step: 2327. Total energy = 2797.3587 kcal/mol (2794.0278 without restraints) Performing minimization step: 2328. Total energy = 2796.1140 kcal/mol (2792.7833 without restraints) Performing minimization step: 2329. Total energy = 2794.8710 kcal/mol (2791.5406 without restraints) Performing minimization step: 2330. Total energy = 2793.6294 kcal/mol (2790.2993 without restraints) Performing minimization step: 2331. Total energy = 2792.3897 kcal/mol (2789.0598 without restraints) Performing minimization step: 2332. Total energy = 2791.1510 kcal/mol (2787.8215 without restraints) Performing minimization step: 2333. Total energy = 2789.9140 kcal/mol (2786.5847 without restraints) Performing minimization step: 2334. Total energy = 2788.6785 kcal/mol (2785.3495 without restraints) Performing minimization step: 2335. Total energy = 2787.4441 kcal/mol (2784.1154 without restraints) Performing minimization step: 2336. Total energy = 2786.2117 kcal/mol (2782.8832 without restraints) Performing minimization step: 2337. Total energy = 2784.9810 kcal/mol (2781.6528 without restraints) Performing minimization step: 2338. Total energy = 2783.7517 kcal/mol (2780.4237 without restraints) Performing minimization step: 2339. Total energy = 2782.5239 kcal/mol (2779.1962 without restraints) Performing minimization step: 2340. Total energy = 2781.2975 kcal/mol (2777.9701 without restraints) Performing minimization step: 2341. Total energy = 2780.0728 kcal/mol (2776.7456 without restraints) Performing minimization step: 2342. Total energy = 2778.8496 kcal/mol (2775.5228 without restraints) Performing minimization step: 2343. Total energy = 2777.6279 kcal/mol (2774.3013 without restraints) Performing minimization step: 2344. Total energy = 2776.4080 kcal/mol (2773.0816 without restraints) Performing minimization step: 2345. Total energy = 2775.1893 kcal/mol (2771.8633 without restraints) Performing minimization step: 2346. Total energy = 2773.9722 kcal/mol (2770.6464 without restraints) Performing minimization step: 2347. Total energy = 2772.7566 kcal/mol (2769.4311 without restraints) Performing minimization step: 2348. Total energy = 2771.5427 kcal/mol (2768.2174 without restraints) Performing minimization step: 2349. Total energy = 2770.3301 kcal/mol (2767.0053 without restraints) Performing minimization step: 2350. Total energy = 2769.1193 kcal/mol (2765.7946 without restraints) Performing minimization step: 2351. Total energy = 2767.9102 kcal/mol (2764.5859 without restraints) Performing minimization step: 2352. Total energy = 2766.7022 kcal/mol (2763.3780 without restraints) Performing minimization step: 2353. Total energy = 2765.4959 kcal/mol (2762.1720 without restraints) Performing minimization step: 2354. Total energy = 2764.2908 kcal/mol (2760.9672 without restraints) Performing minimization step: 2355. Total energy = 2763.0866 kcal/mol (2759.7634 without restraints) Performing minimization step: 2356. Total energy = 2761.8848 kcal/mol (2758.5620 without restraints) Performing minimization step: 2357. Total energy = 2760.6846 kcal/mol (2757.3619 without restraints) Performing minimization step: 2358. Total energy = 2759.4857 kcal/mol (2756.1633 without restraints) Performing minimization step: 2359. Total energy = 2758.2882 kcal/mol (2754.9659 without restraints) Performing minimization step: 2360. Total energy = 2757.0922 kcal/mol (2753.7702 without restraints) Performing minimization step: 2361. Total energy = 2755.8975 kcal/mol (2752.5758 without restraints) Performing minimization step: 2362. Total energy = 2754.7043 kcal/mol (2751.3830 without restraints) Performing minimization step: 2363. Total energy = 2753.5131 kcal/mol (2750.1922 without restraints) Performing minimization step: 2364. Total energy = 2752.3232 kcal/mol (2749.0025 without restraints) Performing minimization step: 2365. Total energy = 2751.1345 kcal/mol (2747.8140 without restraints) Performing minimization step: 2366. Total energy = 2749.9473 kcal/mol (2746.6271 without restraints) Performing minimization step: 2367. Total energy = 2748.7613 kcal/mol (2745.4412 without restraints) Performing minimization step: 2368. Total energy = 2747.5769 kcal/mol (2744.2572 without restraints) Performing minimization step: 2369. Total energy = 2746.3941 kcal/mol (2743.0747 without restraints) Performing minimization step: 2370. Total energy = 2745.2128 kcal/mol (2741.8936 without restraints) Performing minimization step: 2371. Total energy = 2744.0329 kcal/mol (2740.7140 without restraints) Performing minimization step: 2372. Total energy = 2742.8550 kcal/mol (2739.5364 without restraints) Performing minimization step: 2373. Total energy = 2741.6780 kcal/mol (2738.3597 without restraints) Performing minimization step: 2374. Total energy = 2740.5025 kcal/mol (2737.1845 without restraints) Performing minimization step: 2375. Total energy = 2739.3285 kcal/mol (2736.0107 without restraints) Performing minimization step: 2376. Total energy = 2738.1559 kcal/mol (2734.8384 without restraints) Performing minimization step: 2377. Total energy = 2736.9845 kcal/mol (2733.6673 without restraints) Performing minimization step: 2378. Total energy = 2735.8149 kcal/mol (2732.4981 without restraints) Performing minimization step: 2379. Total energy = 2734.6470 kcal/mol (2731.3304 without restraints) Performing minimization step: 2380. Total energy = 2733.4803 kcal/mol (2730.1639 without restraints) Performing minimization step: 2381. Total energy = 2732.3151 kcal/mol (2728.9990 without restraints) Performing minimization step: 2382. Total energy = 2731.1512 kcal/mol (2727.8354 without restraints) Performing minimization step: 2383. Total energy = 2729.9888 kcal/mol (2726.6732 without restraints) Performing minimization step: 2384. Total energy = 2728.8277 kcal/mol (2725.5125 without restraints) Performing minimization step: 2385. Total energy = 2727.6681 kcal/mol (2724.3530 without restraints) Performing minimization step: 2386. Total energy = 2726.5101 kcal/mol (2723.1954 without restraints) Performing minimization step: 2387. Total energy = 2725.3537 kcal/mol (2722.0395 without restraints) Performing minimization step: 2388. Total energy = 2724.1988 kcal/mol (2720.8847 without restraints) Performing minimization step: 2389. Total energy = 2723.0450 kcal/mol (2719.7312 without restraints) Performing minimization step: 2390. Total energy = 2721.8925 kcal/mol (2718.5790 without restraints) Performing minimization step: 2391. Total energy = 2720.7416 kcal/mol (2717.4283 without restraints) Performing minimization step: 2392. Total energy = 2719.5920 kcal/mol (2716.2790 without restraints) Performing minimization step: 2393. Total energy = 2718.4438 kcal/mol (2715.1312 without restraints) Performing minimization step: 2394. Total energy = 2717.2977 kcal/mol (2713.9853 without restraints) Performing minimization step: 2395. Total energy = 2716.1527 kcal/mol (2712.8406 without restraints) Performing minimization step: 2396. Total energy = 2715.0086 kcal/mol (2711.6968 without restraints) Performing minimization step: 2397. Total energy = 2713.8662 kcal/mol (2710.5546 without restraints) Performing minimization step: 2398. Total energy = 2712.7253 kcal/mol (2709.4141 without restraints) Performing minimization step: 2399. Total energy = 2711.5856 kcal/mol (2708.2747 without restraints) Performing minimization step: 2400. Total energy = 2710.4468 kcal/mol (2707.1361 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 2709.3100 kcal/mol (2705.9997 without restraints) Performing minimization step: 2402. Total energy = 2708.1750 kcal/mol (2704.8650 without restraints) Performing minimization step: 2403. Total energy = 2707.0412 kcal/mol (2703.7314 without restraints) Performing minimization step: 2404. Total energy = 2705.9088 kcal/mol (2702.5993 without restraints) Performing minimization step: 2405. Total energy = 2704.7780 kcal/mol (2701.4690 without restraints) Performing minimization step: 2406. Total energy = 2703.6485 kcal/mol (2700.3396 without restraints) Performing minimization step: 2407. Total energy = 2702.5199 kcal/mol (2699.2111 without restraints) Performing minimization step: 2408. Total energy = 2701.3927 kcal/mol (2698.0844 without restraints) Performing minimization step: 2409. Total energy = 2700.2675 kcal/mol (2696.9594 without restraints) Performing minimization step: 2410. Total energy = 2699.1432 kcal/mol (2695.8354 without restraints) Performing minimization step: 2411. Total energy = 2698.0200 kcal/mol (2694.7125 without restraints) Performing minimization step: 2412. Total energy = 2696.8986 kcal/mol (2693.5914 without restraints) Performing minimization step: 2413. Total energy = 2695.7785 kcal/mol (2692.4716 without restraints) Performing minimization step: 2414. Total energy = 2694.6597 kcal/mol (2691.3531 without restraints) Performing minimization step: 2415. Total energy = 2693.5423 kcal/mol (2690.2360 without restraints) Performing minimization step: 2416. Total energy = 2692.4263 kcal/mol (2689.1202 without restraints) Performing minimization step: 2417. Total energy = 2691.3116 kcal/mol (2688.0059 without restraints) Performing minimization step: 2418. Total energy = 2690.1985 kcal/mol (2686.8931 without restraints) Performing minimization step: 2419. Total energy = 2689.0868 kcal/mol (2685.7817 without restraints) Performing minimization step: 2420. Total energy = 2687.9763 kcal/mol (2684.6716 without restraints) Performing minimization step: 2421. Total energy = 2686.8671 kcal/mol (2683.5624 without restraints) Performing minimization step: 2422. Total energy = 2685.7592 kcal/mol (2682.4549 without restraints) Performing minimization step: 2423. Total energy = 2684.6526 kcal/mol (2681.3486 without restraints) Performing minimization step: 2424. Total energy = 2683.5479 kcal/mol (2680.2442 without restraints) Performing minimization step: 2425. Total energy = 2682.4443 kcal/mol (2679.1410 without restraints) Performing minimization step: 2426. Total energy = 2681.3420 kcal/mol (2678.0389 without restraints) Performing minimization step: 2427. Total energy = 2680.2410 kcal/mol (2676.9382 without restraints) Performing minimization step: 2428. Total energy = 2679.1413 kcal/mol (2675.8387 without restraints) Performing minimization step: 2429. Total energy = 2678.0434 kcal/mol (2674.7412 without restraints) Performing minimization step: 2430. Total energy = 2676.9462 kcal/mol (2673.6443 without restraints) Performing minimization step: 2431. Total energy = 2675.8505 kcal/mol (2672.5489 without restraints) Performing minimization step: 2432. Total energy = 2674.7562 kcal/mol (2671.4549 without restraints) Performing minimization step: 2433. Total energy = 2673.6634 kcal/mol (2670.3624 without restraints) Performing minimization step: 2434. Total energy = 2672.5719 kcal/mol (2669.2712 without restraints) Performing minimization step: 2435. Total energy = 2671.4816 kcal/mol (2668.1812 without restraints) Performing minimization step: 2436. Total energy = 2670.3927 kcal/mol (2667.0925 without restraints) Performing minimization step: 2437. Total energy = 2669.3050 kcal/mol (2666.0052 without restraints) Performing minimization step: 2438. Total energy = 2668.2187 kcal/mol (2664.9191 without restraints) Performing minimization step: 2439. Total energy = 2667.1340 kcal/mol (2663.8347 without restraints) Performing minimization step: 2440. Total energy = 2666.0501 kcal/mol (2662.7512 without restraints) Performing minimization step: 2441. Total energy = 2664.9678 kcal/mol (2661.6691 without restraints) Performing minimization step: 2442. Total energy = 2663.8868 kcal/mol (2660.5884 without restraints) Performing minimization step: 2443. Total energy = 2662.8071 kcal/mol (2659.5090 without restraints) Performing minimization step: 2444. Total energy = 2661.7287 kcal/mol (2658.4310 without restraints) Performing minimization step: 2445. Total energy = 2660.6517 kcal/mol (2657.3543 without restraints) Performing minimization step: 2446. Total energy = 2659.5760 kcal/mol (2656.2789 without restraints) Performing minimization step: 2447. Total energy = 2658.5018 kcal/mol (2655.2049 without restraints) Performing minimization step: 2448. Total energy = 2657.4287 kcal/mol (2654.1322 without restraints) Performing minimization step: 2449. Total energy = 2656.3570 kcal/mol (2653.0609 without restraints) Performing minimization step: 2450. Total energy = 2655.2866 kcal/mol (2651.9906 without restraints) Performing minimization step: 2451. Total energy = 2654.2174 kcal/mol (2650.9216 without restraints) Performing minimization step: 2452. Total energy = 2653.1496 kcal/mol (2649.8542 without restraints) Performing minimization step: 2453. Total energy = 2652.0830 kcal/mol (2648.7880 without restraints) Performing minimization step: 2454. Total energy = 2651.0177 kcal/mol (2647.7230 without restraints) Performing minimization step: 2455. Total energy = 2649.9540 kcal/mol (2646.6596 without restraints) Performing minimization step: 2456. Total energy = 2648.8914 kcal/mol (2645.5971 without restraints) Performing minimization step: 2457. Total energy = 2647.8301 kcal/mol (2644.5363 without restraints) Performing minimization step: 2458. Total energy = 2646.7698 kcal/mol (2643.4763 without restraints) Performing minimization step: 2459. Total energy = 2645.7111 kcal/mol (2642.4178 without restraints) Performing minimization step: 2460. Total energy = 2644.6536 kcal/mol (2641.3606 without restraints) Performing minimization step: 2461. Total energy = 2643.5976 kcal/mol (2640.3049 without restraints) Performing minimization step: 2462. Total energy = 2642.5427 kcal/mol (2639.2505 without restraints) Performing minimization step: 2463. Total energy = 2641.4891 kcal/mol (2638.1972 without restraints) Performing minimization step: 2464. Total energy = 2640.4368 kcal/mol (2637.1452 without restraints) Performing minimization step: 2465. Total energy = 2639.3860 kcal/mol (2636.0949 without restraints) Performing minimization step: 2466. Total energy = 2638.3367 kcal/mol (2635.0456 without restraints) Performing minimization step: 2467. Total energy = 2637.2883 kcal/mol (2633.9977 without restraints) Performing minimization step: 2468. Total energy = 2636.2414 kcal/mol (2632.9509 without restraints) Performing minimization step: 2469. Total energy = 2635.1954 kcal/mol (2631.9052 without restraints) Performing minimization step: 2470. Total energy = 2634.1506 kcal/mol (2630.8608 without restraints) Performing minimization step: 2471. Total energy = 2633.1072 kcal/mol (2629.8177 without restraints) Performing minimization step: 2472. Total energy = 2632.0646 kcal/mol (2628.7754 without restraints) Performing minimization step: 2473. Total energy = 2631.0238 kcal/mol (2627.7351 without restraints) Performing minimization step: 2474. Total energy = 2629.9841 kcal/mol (2626.6955 without restraints) Performing minimization step: 2475. Total energy = 2628.9459 kcal/mol (2625.6577 without restraints) Performing minimization step: 2476. Total energy = 2627.9093 kcal/mol (2624.6213 without restraints) Performing minimization step: 2477. Total energy = 2626.8734 kcal/mol (2623.5858 without restraints) Performing minimization step: 2478. Total energy = 2625.8392 kcal/mol (2622.5519 without restraints) Performing minimization step: 2479. Total energy = 2624.8059 kcal/mol (2621.5189 without restraints) Performing minimization step: 2480. Total energy = 2623.7738 kcal/mol (2620.4871 without restraints) Performing minimization step: 2481. Total energy = 2622.7427 kcal/mol (2619.4562 without restraints) Performing minimization step: 2482. Total energy = 2621.7130 kcal/mol (2618.4269 without restraints) Performing minimization step: 2483. Total energy = 2620.6846 kcal/mol (2617.3987 without restraints) Performing minimization step: 2484. Total energy = 2619.6574 kcal/mol (2616.3719 without restraints) Performing minimization step: 2485. Total energy = 2618.6315 kcal/mol (2615.3463 without restraints) Performing minimization step: 2486. Total energy = 2617.6069 kcal/mol (2614.3220 without restraints) Performing minimization step: 2487. Total energy = 2616.5835 kcal/mol (2613.2990 without restraints) Performing minimization step: 2488. Total energy = 2615.5614 kcal/mol (2612.2772 without restraints) Performing minimization step: 2489. Total energy = 2614.5402 kcal/mol (2611.2562 without restraints) Performing minimization step: 2490. Total energy = 2613.5204 kcal/mol (2610.2368 without restraints) Performing minimization step: 2491. Total energy = 2612.5021 kcal/mol (2609.2188 without restraints) Performing minimization step: 2492. Total energy = 2611.4849 kcal/mol (2608.2019 without restraints) Performing minimization step: 2493. Total energy = 2610.4689 kcal/mol (2607.1863 without restraints) Performing minimization step: 2494. Total energy = 2609.4541 kcal/mol (2606.1718 without restraints) Performing minimization step: 2495. Total energy = 2608.4406 kcal/mol (2605.1586 without restraints) Performing minimization step: 2496. Total energy = 2607.4283 kcal/mol (2604.1467 without restraints) Performing minimization step: 2497. Total energy = 2606.4172 kcal/mol (2603.1359 without restraints) Performing minimization step: 2498. Total energy = 2605.4075 kcal/mol (2602.1264 without restraints) Performing minimization step: 2499. Total energy = 2604.3986 kcal/mol (2601.1178 without restraints) Performing minimization step: 2500. Total energy = 2603.3910 kcal/mol (2600.1106 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/07e04e2b/tmp/apt60_rank_1_refx/apt60_rank_1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 2602.3849 kcal/mol (2599.1048 without restraints) Performing minimization step: 2502. Total energy = 2601.3800 kcal/mol (2598.1003 without restraints) Performing minimization step: 2503. Total energy = 2600.3765 kcal/mol (2597.0971 without restraints) Performing minimization step: 2504. Total energy = 2599.3739 kcal/mol (2596.0949 without restraints) Performing minimization step: 2505. Total energy = 2598.3726 kcal/mol (2595.0938 without restraints) Performing minimization step: 2506. Total energy = 2597.3725 kcal/mol (2594.0940 without restraints) Performing minimization step: 2507. Total energy = 2596.3733 kcal/mol (2593.0952 without restraints) Performing minimization step: 2508. Total energy = 2595.3758 kcal/mol (2592.0980 without restraints) Performing minimization step: 2509. Total energy = 2594.3792 kcal/mol (2591.1018 without restraints) Performing minimization step: 2510. Total energy = 2593.3839 kcal/mol (2590.1067 without restraints) Performing minimization step: 2511. Total energy = 2592.3904 kcal/mol (2589.1136 without restraints) Performing minimization step: 2512. Total energy = 2591.3976 kcal/mol (2588.1210 without restraints) Performing minimization step: 2513. Total energy = 2590.4058 kcal/mol (2587.1296 without restraints) Performing minimization step: 2514. Total energy = 2589.4153 kcal/mol (2586.1394 without restraints) Performing minimization step: 2515. Total energy = 2588.4261 kcal/mol (2585.1505 without restraints) Performing minimization step: 2516. Total energy = 2587.4381 kcal/mol (2584.1629 without restraints) Performing minimization step: 2517. Total energy = 2586.4509 kcal/mol (2583.1760 without restraints) Performing minimization step: 2518. Total energy = 2585.4650 kcal/mol (2582.1904 without restraints) Performing minimization step: 2519. Total energy = 2584.4803 kcal/mol (2581.2061 without restraints) Performing minimization step: 2520. Total energy = 2583.4969 kcal/mol (2580.2229 without restraints) Performing minimization step: 2521. Total energy = 2582.5148 kcal/mol (2579.2412 without restraints) Performing minimization step: 2522. Total energy = 2581.5333 kcal/mol (2578.2600 without restraints) Performing minimization step: 2523. Total energy = 2580.5539 kcal/mol (2577.2810 without restraints) Performing minimization step: 2524. Total energy = 2579.5751 kcal/mol (2576.3026 without restraints) Performing minimization step: 2525. Total energy = 2578.5975 kcal/mol (2575.3253 without restraints) Performing minimization step: 2526. Total energy = 2577.6211 kcal/mol (2574.3492 without restraints) Performing minimization step: 2527. Total energy = 2576.6459 kcal/mol (2573.3742 without restraints) Performing minimization step: 2528. Total energy = 2575.6721 kcal/mol (2572.4008 without restraints) Performing minimization step: 2529. Total energy = 2574.6993 kcal/mol (2571.4284 without restraints) Performing minimization step: 2530. Total energy = 2573.7274 kcal/mol (2570.4568 without restraints) Performing minimization step: 2531. Total energy = 2572.7569 kcal/mol (2569.4866 without restraints) Performing minimization step: 2532. Total energy = 2571.7874 kcal/mol (2568.5175 without restraints) Performing minimization step: 2533. Total energy = 2570.8192 kcal/mol (2567.5496 without restraints) Performing minimization step: 2534. Total energy = 2569.8523 kcal/mol (2566.5829 without restraints) Performing minimization step: 2535. Total energy = 2568.8863 kcal/mol (2565.6174 without restraints) Performing minimization step: 2536. Total energy = 2567.9215 kcal/mol (2564.6529 without restraints) Performing minimization step: 2537. Total energy = 2566.9579 kcal/mol (2563.6897 without restraints) Performing minimization step: 2538. Total energy = 2565.9955 kcal/mol (2562.7276 without restraints) Performing minimization step: 2539. Total energy = 2565.0342 kcal/mol (2561.7666 without restraints) Performing minimization step: 2540. Total energy = 2564.0738 kcal/mol (2560.8065 without restraints) Performing minimization step: 2541. Total energy = 2563.1147 kcal/mol (2559.8478 without restraints) Performing minimization step: 2542. Total energy = 2562.1569 kcal/mol (2558.8903 without restraints) Performing minimization step: 2543. Total energy = 2561.2002 kcal/mol (2557.9339 without restraints) Performing minimization step: 2544. Total energy = 2560.2446 kcal/mol (2556.9786 without restraints) Performing minimization step: 2545. Total energy = 2559.2901 kcal/mol (2556.0245 without restraints) Performing minimization step: 2546. Total energy = 2558.3369 kcal/mol (2555.0717 without restraints) Performing minimization step: 2547. Total energy = 2557.3847 kcal/mol (2554.1198 without restraints) Performing minimization step: 2548. Total energy = 2556.4341 kcal/mol (2553.1695 without restraints) Performing minimization step: 2549. Total energy = 2555.4840 kcal/mol (2552.2198 without restraints) Performing minimization step: 2550. Total energy = 2554.5355 kcal/mol (2551.2717 without restraints) Performing minimization step: 2551. Total energy = 2553.5879 kcal/mol (2550.3244 without restraints) Performing minimization step: 2552. Total energy = 2552.6414 kcal/mol (2549.3782 without restraints) Performing minimization step: 2553. Total energy = 2551.6961 kcal/mol (2548.4332 without restraints) Performing minimization step: 2554. Total energy = 2550.7518 kcal/mol (2547.4893 without restraints) Performing minimization step: 2555. Total energy = 2549.8089 kcal/mol (2546.5467 without restraints) Performing minimization step: 2556. Total energy = 2548.8667 kcal/mol (2545.6048 without restraints) Performing minimization step: 2557. Total energy = 2547.9261 kcal/mol (2544.6646 without restraints) Performing minimization step: 2558. Total energy = 2546.9862 kcal/mol (2543.7251 without restraints) Performing minimization step: 2559. Total energy = 2546.0476 kcal/mol (2542.7868 without restraints) Performing minimization step: 2560. Total energy = 2545.1101 kcal/mol (2541.8496 without restraints) Performing minimization step: 2561. Total energy = 2544.1736 kcal/mol (2540.9135 without restraints) Performing minimization step: 2562. Total energy = 2543.2383 kcal/mol (2539.9785 without restraints) Performing minimization step: 2563. Total energy = 2542.3042 kcal/mol (2539.0448 without restraints) Performing minimization step: 2564. Total energy = 2541.3711 kcal/mol (2538.1120 without restraints) Performing minimization step: 2565. Total energy = 2540.4391 kcal/mol (2537.1804 without restraints) Performing minimization step: 2566. Total energy = 2539.5082 kcal/mol (2536.2498 without restraints) Performing minimization step: 2567. Total energy = 2538.5784 kcal/mol (2535.3203 without restraints) Performing minimization step: 2568. Total energy = 2537.6497 kcal/mol (2534.3920 without restraints) Performing minimization step: 2569. Total energy = 2536.7221 kcal/mol (2533.4648 without restraints) Performing minimization step: 2570. Total energy = 2535.7960 kcal/mol (2532.5390 without restraints) Performing minimization step: 2571. Total energy = 2534.8705 kcal/mol (2531.6138 without restraints) Performing minimization step: 2572. Total energy = 2533.9464 kcal/mol (2530.6901 without restraints) Performing minimization step: 2573. Total energy = 2533.0237 kcal/mol (2529.7677 without restraints) Performing minimization step: 2574. Total energy = 2532.1022 kcal/mol (2528.8465 without restraints) Performing minimization step: 2575. Total energy = 2531.1811 kcal/mol (2527.9258 without restraints) Performing minimization step: 2576. Total energy = 2530.2614 kcal/mol (2527.0065 without restraints) Performing minimization step: 2577. Total energy = 2529.3425 kcal/mol (2526.0879 without restraints) Killed /home/ubuntu/rna-tools//opt/qrnas/ Save to apt60_rank_1_refx.pdb DONE!