============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12.pdb ============================================================================= Atom's 439 O3' residue renamed to RU3 Atom's 438 O2' residue renamed to RU3 Atom's 437 C2' residue renamed to RU3 Atom's 436 C3' residue renamed to RU3 Atom's 435 O2 residue renamed to RU3 Atom's 434 C2 residue renamed to RU3 Atom's 433 N3 residue renamed to RU3 Atom's 432 O4 residue renamed to RU3 Atom's 431 C4 residue renamed to RU3 Atom's 430 C5 residue renamed to RU3 Atom's 429 C6 residue renamed to RU3 Atom's 428 N1 residue renamed to RU3 Atom's 427 C1' residue renamed to RU3 Atom's 426 O4' residue renamed to RU3 Atom's 425 C4' residue renamed to RU3 Atom's 424 C5' residue renamed to RU3 Atom's 423 O5' residue renamed to RU3 Atom's 422 OP2 residue renamed to RU3 Atom's 421 OP1 residue renamed to RU3 Atom's 420 P residue renamed to RU3 Missing atom added: ATOM 21 H5'1 U B 1 -19.280 18.171 -39.710 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 1 -19.227 19.993 -40.039 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 1 -18.927 19.855 -37.985 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 1 -17.947 17.899 -37.447 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 1 -18.796 21.247 -35.980 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 1 -18.313 18.113 -35.751 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 1 -17.119 18.025 -35.347 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 1 -21.289 20.486 -37.627 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 1 -21.607 20.182 -32.016 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 1 -24.145 20.464 -36.308 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 2 -13.516 17.922 -38.963 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 2 -15.312 17.826 -39.415 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 2 -14.106 16.442 -40.665 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 2 -16.175 15.174 -38.973 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 2 -12.738 13.468 -39.979 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 2 -15.501 13.090 -40.256 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 2 -14.800 14.810 -42.027 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 2 -14.238 14.581 -37.024 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 2 -14.358 10.629 -34.331 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 2 -13.922 9.443 -35.487 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 2 -14.624 13.248 -34.637 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 3 -16.566 13.858 -43.294 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 3 -18.309 13.240 -43.417 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 3 -16.843 11.745 -44.294 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 3 -18.853 10.874 -42.826 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 3 -15.708 9.253 -41.809 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 3 -18.305 8.785 -42.576 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 3 -16.969 8.789 -44.419 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 3 -18.413 11.599 -40.338 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 3 -17.997 9.877 -35.666 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 3 -16.946 8.698 -35.018 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 3 -14.099 6.795 -38.101 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 4 -18.208 7.103 -45.961 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 4 -20.028 6.920 -46.262 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 4 -19.076 5.020 -45.436 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 4 -21.288 6.034 -43.994 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 4 -18.329 4.570 -42.011 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 4 -21.032 4.210 -42.422 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 4 -19.761 3.008 -44.225 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 4 -20.650 7.619 -42.342 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 4 -20.350 8.821 -37.483 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 4 -19.592 7.996 -36.193 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 4 -17.273 4.202 -37.486 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 5 -21.600 1.606 -44.801 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 5 -23.352 1.253 -45.293 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 5 -22.487 -0.173 -43.640 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 5 -24.785 1.391 -42.800 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 5 -22.311 1.322 -40.235 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 5 -25.037 1.259 -40.875 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 5 -24.327 -0.648 -40.614 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 5 -23.903 4.026 -42.427 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 5 -23.487 7.562 -38.959 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 5 -22.867 7.485 -37.370 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 5 -21.103 3.356 -36.242 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 6 -25.640 -2.590 -39.981 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 6 -27.462 -2.587 -40.320 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 6 -27.041 -2.399 -38.117 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 6 -28.488 -0.190 -39.441 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 6 -26.134 0.476 -36.431 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 6 -28.812 0.798 -37.241 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 6 -28.562 -1.542 -36.355 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 6 -26.893 1.282 -39.862 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 6 -26.000 6.001 -39.968 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 6 -25.595 6.269 -38.327 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 6 -26.702 3.703 -41.162 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 7 -30.836 -1.906 -35.911 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 7 -32.577 -1.433 -36.332 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 7 -32.146 -0.772 -34.242 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 7 -33.329 0.940 -36.104 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 7 -30.825 2.509 -33.699 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 7 -33.462 2.671 -34.466 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 7 -33.308 0.772 -32.838 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 7 -30.416 1.765 -37.086 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 7 -30.190 6.755 -35.551 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 7 -29.517 3.443 -38.665 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 8 -36.273 1.553 -32.873 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 8 -37.793 1.449 -33.929 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 8 -37.510 3.516 -32.890 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 8 -37.296 3.558 -35.862 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 8 -35.250 5.971 -33.638 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 8 -37.175 6.037 -35.585 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 8 -38.391 5.515 -33.353 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 8 -35.129 3.380 -36.130 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 8 -32.143 5.113 -39.377 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 8 -31.805 6.668 -38.745 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 8 -33.646 3.210 -38.437 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 9 -40.525 6.486 -34.881 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 9 -41.537 6.452 -36.434 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 9 -40.832 8.574 -35.625 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 9 -39.835 8.163 -38.227 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 9 -37.414 9.676 -35.729 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 9 -38.635 10.255 -38.038 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 9 -40.324 10.743 -36.188 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 9 -37.965 6.715 -37.741 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 9 -34.463 6.883 -40.986 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 9 -33.735 8.373 -40.561 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 9 -36.489 5.611 -39.777 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 10 -43.676 9.663 -40.682 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 10 -43.748 7.826 -40.445 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 10 -43.524 8.292 -42.607 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 10 -41.958 6.396 -41.295 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 10 -40.190 8.371 -43.888 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 10 -40.483 5.779 -42.117 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 10 -41.198 5.202 -43.341 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 10 -39.073 8.797 -40.585 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 10 -34.436 8.889 -42.285 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 10 -33.810 8.782 -43.870 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 10 -37.100 8.095 -47.088 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 11 -45.911 7.713 -45.436 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 11 -46.372 5.960 -45.826 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 11 -46.318 7.472 -47.634 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 11 -46.633 5.701 -48.219 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 11 -43.580 6.439 -49.681 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 11 -45.936 5.672 -50.204 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 11 -45.741 7.970 -50.340 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 11 -42.697 5.140 -46.478 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 11 -42.399 0.233 -47.279 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 11 -42.843 -0.678 -48.653 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 11 -44.700 1.835 -52.072 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 12 -48.952 6.033 -49.893 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 12 -50.651 6.517 -49.331 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 12 -49.987 4.348 -50.345 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 12 -50.222 3.839 -47.468 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 12 -47.392 2.204 -49.642 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 12 -49.555 1.514 -48.002 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 12 -50.601 2.067 -50.217 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 12 -47.953 4.439 -46.907 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 12 -45.127 2.861 -43.469 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 12 -44.578 1.362 -44.089 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 12 -46.716 4.622 -44.490 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 13 -51.047 0.509 -47.546 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 13 -52.510 0.246 -46.440 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 13 -50.538 -0.747 -45.695 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 13 -51.817 1.005 -43.908 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 13 -47.979 1.106 -44.001 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 13 -50.130 0.680 -42.282 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 13 -49.729 -1.455 -43.457 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 13 -50.119 3.420 -45.413 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 13 -47.235 4.948 -41.309 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 13 -50.065 5.840 -44.828 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 14 -50.780 -1.883 -41.121 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 14 -52.347 -2.185 -40.177 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 14 -50.584 -1.385 -38.886 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 14 -52.889 0.436 -39.037 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 14 -49.303 1.850 -38.849 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 14 -51.717 1.920 -37.517 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 14 -50.546 -0.200 -36.800 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 14 -52.049 1.564 -41.151 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 14 -52.374 5.936 -42.973 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 14 -51.297 6.806 -41.967 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 14 -53.085 3.413 -42.883 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 15 -52.199 1.057 -34.919 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 15 -53.928 1.118 -34.254 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 15 -52.874 3.053 -33.840 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 15 -55.290 3.157 -35.572 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 15 -52.348 5.644 -36.041 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 15 -55.095 5.585 -35.525 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 15 -53.987 5.243 -33.323 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 15 -54.312 3.022 -37.561 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 15 -53.912 7.600 -40.079 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 15 -55.387 3.252 -39.791 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 16 -55.906 6.020 -31.728 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 16 -57.742 6.234 -31.854 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 16 -57.387 8.132 -31.644 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 16 -59.314 6.708 -33.167 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 16 -58.257 9.159 -35.169 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 16 -60.148 6.991 -34.396 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 16 -61.005 7.898 -34.012 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 16 -57.280 5.669 -35.882 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 16 -57.324 6.662 -40.812 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 16 -57.767 8.106 -41.609 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 16 -58.889 11.591 -38.836 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 17 -62.048 8.513 -32.424 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 17 -62.693 9.709 -31.164 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 17 -64.299 8.306 -31.860 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 17 -63.861 8.534 -29.075 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 17 -64.883 5.081 -30.806 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 17 -65.799 6.967 -28.861 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 17 -66.391 7.925 -31.120 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 17 -61.880 5.906 -28.889 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 17 -62.401 2.009 -25.758 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 17 -63.684 0.891 -25.616 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 17 -67.291 1.771 -28.345 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 18 -68.371 8.916 -29.572 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 18 -68.733 10.009 -28.122 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 18 -69.979 8.150 -27.996 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 18 -68.248 8.825 -25.771 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 18 -68.818 5.109 -26.715 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 18 -69.000 6.963 -24.537 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 18 -71.064 7.106 -25.762 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 18 -65.795 7.380 -26.568 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 18 -65.557 1.678 -22.688 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 18 -69.102 2.304 -23.629 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 18 -68.076 2.013 -22.340 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 19 -72.503 7.904 -23.675 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 19 -72.186 9.001 -22.215 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 19 -72.639 7.024 -21.420 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 19 -70.239 8.460 -20.659 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 19 -70.157 4.607 -20.902 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 19 -69.729 6.685 -19.101 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 19 -72.196 6.229 -19.154 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 19 -68.775 7.751 -22.044 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 19 -64.105 6.912 -22.220 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 19 -64.049 5.259 -21.779 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 19 -66.178 8.488 -22.515 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 20 -72.150 7.113 -16.811 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 20 -71.675 8.488 -15.663 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 20 -71.052 6.464 -14.831 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 20 -69.072 8.496 -15.094 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 20 -68.137 4.783 -15.867 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 20 -67.425 7.001 -14.212 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 20 -69.278 5.840 -13.113 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 20 -68.138 7.922 -17.909 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 20 -63.371 7.322 -19.428 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 20 -62.212 6.163 -18.947 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 20 -63.691 3.232 -15.702 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RU3 B 21 -68.847 6.328 -10.907 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RU3 B 21 -68.127 7.666 -9.847 1.00 0.00 H Missing atom added: ATOM 23 H4' RU3 B 21 -66.781 5.902 -9.686 1.00 0.00 H Missing atom added: ATOM 24 H3' RU3 B 21 -65.768 8.503 -10.609 1.00 0.00 H Missing atom added: ATOM 27 H1' RU3 B 21 -64.218 5.321 -12.063 1.00 0.00 H Missing atom added: ATOM 25 H2' RU3 B 21 -63.578 7.780 -10.742 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RU3 B 21 -64.163 6.209 -9.009 1.00 0.00 H Missing atom added: ATOM 29 H6 RU3 B 21 -65.882 8.441 -12.850 1.00 0.00 H Missing atom added: ATOM 30 H3 RU3 B 21 -62.058 6.637 -15.962 1.00 0.00 H Missing atom added: ATOM 28 H5 RU3 B 21 -65.308 9.721 -14.917 1.00 0.00 H Missing atom added: ATOM 31 H3T RU3 B 21 -65.844 8.367 -8.170 1.00 0.00 H Missing atom added: ATOM 13425 OP3 U B 1 -19.184 17.062 -42.635 1.00 0.00 Number of atoms: 667 Number of residues: 21 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 717 Number of angles built: 1281 Number of dihedrals built: 1942 Number of impropers built: 136 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 220113 Number of van der Waals pairs: 45722 Number of H-bonds built: 2 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 0 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 5157.6325 kcal/mol (5155.2746 without restraints) Performing minimization step: 2. Total energy = 5137.8135 kcal/mol (5135.4927 without restraints) Performing minimization step: 3. Total energy = 5118.3054 kcal/mol (5116.0208 without restraints) Performing minimization step: 4. Total energy = 5099.1005 kcal/mol (5096.8513 without restraints) Performing minimization step: 5. Total energy = 5080.1911 kcal/mol (5077.9764 without restraints) Performing minimization step: 6. Total energy = 5061.5700 kcal/mol (5059.3888 without restraints) Performing minimization step: 7. Total energy = 5043.2298 kcal/mol (5041.0814 without restraints) Performing minimization step: 8. Total energy = 5025.1638 kcal/mol (5023.0473 without restraints) Performing minimization step: 9. Total energy = 5007.3650 kcal/mol (5005.2797 without restraints) Performing minimization step: 10. Total energy = 4989.8269 kcal/mol (4987.7720 without restraints) Performing minimization step: 11. Total energy = 4972.5432 kcal/mol (4970.5179 without restraints) Performing minimization step: 12. Total energy = 4955.5075 kcal/mol (4953.5111 without restraints) Performing minimization step: 13. Total energy = 4938.7138 kcal/mol (4936.7457 without restraints) Performing minimization step: 14. Total energy = 4922.1563 kcal/mol (4920.2157 without restraints) Performing minimization step: 15. Total energy = 4905.8292 kcal/mol (4903.9154 without restraints) Performing minimization step: 16. Total energy = 4889.7269 kcal/mol (4887.8394 without restraints) Performing minimization step: 17. Total energy = 4873.8442 kcal/mol (4871.9823 without restraints) Performing minimization step: 18. Total energy = 4858.1755 kcal/mol (4856.3385 without restraints) Performing minimization step: 19. Total energy = 4842.7157 kcal/mol (4840.9031 without restraints) Performing minimization step: 20. Total energy = 4827.4599 kcal/mol (4825.6710 without restraints) Performing minimization step: 21. Total energy = 4812.4032 kcal/mol (4810.6375 without restraints) Performing minimization step: 22. Total energy = 4797.5408 kcal/mol (4795.7979 without restraints) Performing minimization step: 23. Total energy = 4782.8682 kcal/mol (4781.1474 without restraints) Performing minimization step: 24. Total energy = 4768.3809 kcal/mol (4766.6816 without restraints) Performing minimization step: 25. Total energy = 4754.0744 kcal/mol (4752.3962 without restraints) Performing minimization step: 26. Total energy = 4739.9445 kcal/mol (4738.2869 without restraints) Performing minimization step: 27. Total energy = 4725.9870 kcal/mol (4724.3496 without restraints) Performing minimization step: 28. Total energy = 4712.1979 kcal/mol (4710.5801 without restraints) Performing minimization step: 29. Total energy = 4698.5733 kcal/mol (4696.9747 without restraints) Performing minimization step: 30. Total energy = 4685.1092 kcal/mol (4683.5294 without restraints) Performing minimization step: 31. Total energy = 4671.8021 kcal/mol (4670.2405 without restraints) Performing minimization step: 32. Total energy = 4658.6481 kcal/mol (4657.1044 without restraints) Performing minimization step: 33. Total energy = 4645.6440 kcal/mol (4644.1178 without restraints) Performing minimization step: 34. Total energy = 4632.7859 kcal/mol (4631.2767 without restraints) Performing minimization step: 35. Total energy = 4620.0706 kcal/mol (4618.5781 without restraints) Performing minimization step: 36. Total energy = 4607.4949 kcal/mol (4606.0186 without restraints) Performing minimization step: 37. Total energy = 4595.0554 kcal/mol (4593.5951 without restraints) Performing minimization step: 38. Total energy = 4582.7491 kcal/mol (4581.3043 without restraints) Performing minimization step: 39. Total energy = 4570.5730 kcal/mol (4569.1434 without restraints) Performing minimization step: 40. Total energy = 4558.5241 kcal/mol (4557.1094 without restraints) Performing minimization step: 41. Total energy = 4546.5995 kcal/mol (4545.1992 without restraints) Performing minimization step: 42. Total energy = 4534.7965 kcal/mol (4533.4105 without restraints) Performing minimization step: 43. Total energy = 4523.1122 kcal/mol (4521.7400 without restraints) Performing minimization step: 44. Total energy = 4511.5439 kcal/mol (4510.1852 without restraints) Performing minimization step: 45. Total energy = 4500.0890 kcal/mol (4498.7436 without restraints) Performing minimization step: 46. Total energy = 4488.7451 kcal/mol (4487.4126 without restraints) Performing minimization step: 47. Total energy = 4477.5096 kcal/mol (4476.1898 without restraints) Performing minimization step: 48. Total energy = 4466.3802 kcal/mol (4465.0727 without restraints) Performing minimization step: 49. Total energy = 4455.3544 kcal/mol (4454.0590 without restraints) Performing minimization step: 50. Total energy = 4444.4300 kcal/mol (4443.1465 without restraints) Performing minimization step: 51. Total energy = 4433.6048 kcal/mol (4432.3328 without restraints) Performing minimization step: 52. Total energy = 4422.8766 kcal/mol (4421.6159 without restraints) Performing minimization step: 53. Total energy = 4412.2432 kcal/mol (4410.9936 without restraints) Performing minimization step: 54. Total energy = 4401.7026 kcal/mol (4400.4639 without restraints) Performing minimization step: 55. Total energy = 4391.2529 kcal/mol (4390.0247 without restraints) Performing minimization step: 56. Total energy = 4380.8920 kcal/mol (4379.6742 without restraints) Performing minimization step: 57. Total energy = 4370.6180 kcal/mol (4369.4103 without restraints) Performing minimization step: 58. Total energy = 4360.4290 kcal/mol (4359.2313 without restraints) Performing minimization step: 59. Total energy = 4350.3233 kcal/mol (4349.1353 without restraints) Performing minimization step: 60. Total energy = 4340.2990 kcal/mol (4339.1206 without restraints) Performing minimization step: 61. Total energy = 4330.3546 kcal/mol (4329.1854 without restraints) Performing minimization step: 62. Total energy = 4320.4882 kcal/mol (4319.3282 without restraints) Performing minimization step: 63. Total energy = 4310.6985 kcal/mol (4309.5474 without restraints) Performing minimization step: 64. Total energy = 4300.9834 kcal/mol (4299.8410 without restraints) Performing minimization step: 65. Total energy = 4291.3418 kcal/mol (4290.2080 without restraints) Performing minimization step: 66. Total energy = 4281.7718 kcal/mol (4280.6464 without restraints) Performing minimization step: 67. Total energy = 4272.2722 kcal/mol (4271.1550 without restraints) Performing minimization step: 68. Total energy = 4262.8414 kcal/mol (4261.7323 without restraints) Performing minimization step: 69. Total energy = 4253.4781 kcal/mol (4252.3769 without restraints) Performing minimization step: 70. Total energy = 4244.1810 kcal/mol (4243.0875 without restraints) Performing minimization step: 71. Total energy = 4234.9487 kcal/mol (4233.8627 without restraints) Performing minimization step: 72. Total energy = 4225.7799 kcal/mol (4224.7014 without restraints) Performing minimization step: 73. Total energy = 4216.6733 kcal/mol (4215.6021 without restraints) Performing minimization step: 74. Total energy = 4207.6280 kcal/mol (4206.5639 without restraints) Performing minimization step: 75. Total energy = 4198.6424 kcal/mol (4197.5853 without restraints) Performing minimization step: 76. Total energy = 4189.7154 kcal/mol (4188.6652 without restraints) Performing minimization step: 77. Total energy = 4180.8460 kcal/mol (4179.8025 without restraints) Performing minimization step: 78. Total energy = 4172.0331 kcal/mol (4170.9961 without restraints) Performing minimization step: 79. Total energy = 4163.2755 kcal/mol (4162.2450 without restraints) Performing minimization step: 80. Total energy = 4154.5724 kcal/mol (4153.5483 without restraints) Performing minimization step: 81. Total energy = 4145.9225 kcal/mol (4144.9046 without restraints) Performing minimization step: 82. Total energy = 4137.3249 kcal/mol (4136.3131 without restraints) Performing minimization step: 83. Total energy = 4128.7786 kcal/mol (4127.7728 without restraints) Performing minimization step: 84. Total energy = 4120.2827 kcal/mol (4119.2828 without restraints) Performing minimization step: 85. Total energy = 4111.8363 kcal/mol (4110.8423 without restraints) Performing minimization step: 86. Total energy = 4103.4386 kcal/mol (4102.4504 without restraints) Performing minimization step: 87. Total energy = 4095.0887 kcal/mol (4094.1059 without restraints) Performing minimization step: 88. Total energy = 4086.7855 kcal/mol (4085.8082 without restraints) Performing minimization step: 89. Total energy = 4078.5284 kcal/mol (4077.5564 without restraints) Performing minimization step: 90. Total energy = 4070.3165 kcal/mol (4069.3499 without restraints) Performing minimization step: 91. Total energy = 4062.1491 kcal/mol (4061.1876 without restraints) Performing minimization step: 92. Total energy = 4054.0253 kcal/mol (4053.0690 without restraints) Performing minimization step: 93. Total energy = 4045.9445 kcal/mol (4044.9932 without restraints) Performing minimization step: 94. Total energy = 4037.9060 kcal/mol (4036.9596 without restraints) Performing minimization step: 95. Total energy = 4029.9089 kcal/mol (4028.9674 without restraints) Performing minimization step: 96. Total energy = 4021.9527 kcal/mol (4021.0160 without restraints) Performing minimization step: 97. Total energy = 4014.0366 kcal/mol (4013.1046 without restraints) Performing minimization step: 98. Total energy = 4006.1599 kcal/mol (4005.2325 without restraints) Performing minimization step: 99. Total energy = 3998.3221 kcal/mol (3997.3993 without restraints) Performing minimization step: 100. Total energy = 3990.5227 kcal/mol (3989.6043 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 101. Total energy = 3982.7613 kcal/mol (3981.8473 without restraints) Performing minimization step: 102. Total energy = 3975.0365 kcal/mol (3974.1269 without restraints) Performing minimization step: 103. Total energy = 3967.3482 kcal/mol (3966.4428 without restraints) Performing minimization step: 104. Total energy = 3959.6958 kcal/mol (3958.7946 without restraints) Performing minimization step: 105. Total energy = 3952.0787 kcal/mol (3951.1817 without restraints) Performing minimization step: 106. Total energy = 3944.4965 kcal/mol (3943.6035 without restraints) Performing minimization step: 107. Total energy = 3936.9485 kcal/mol (3936.0596 without restraints) Performing minimization step: 108. Total energy = 3929.4344 kcal/mol (3928.5495 without restraints) Performing minimization step: 109. Total energy = 3921.9536 kcal/mol (3921.0725 without restraints) Performing minimization step: 110. Total energy = 3914.5056 kcal/mol (3913.6284 without restraints) Performing minimization step: 111. Total energy = 3907.0899 kcal/mol (3906.2165 without restraints) Performing minimization step: 112. Total energy = 3899.7061 kcal/mol (3898.8364 without restraints) Performing minimization step: 113. Total energy = 3892.3538 kcal/mol (3891.4878 without restraints) Performing minimization step: 114. Total energy = 3885.0325 kcal/mol (3884.1701 without restraints) Performing minimization step: 115. Total energy = 3877.7417 kcal/mol (3876.8829 without restraints) Performing minimization step: 116. Total energy = 3870.4811 kcal/mol (3869.6259 without restraints) Performing minimization step: 117. Total energy = 3863.2503 kcal/mol (3862.3985 without restraints) Performing minimization step: 118. Total energy = 3856.0488 kcal/mol (3855.2005 without restraints) Performing minimization step: 119. Total energy = 3848.8763 kcal/mol (3848.0314 without restraints) Performing minimization step: 120. Total energy = 3841.7324 kcal/mol (3840.8909 without restraints) Performing minimization step: 121. Total energy = 3834.6168 kcal/mol (3833.7785 without restraints) Performing minimization step: 122. Total energy = 3827.5290 kcal/mol (3826.6940 without restraints) Performing minimization step: 123. Total energy = 3820.4688 kcal/mol (3819.6372 without restraints) Performing minimization step: 124. Total energy = 3813.4358 kcal/mol (3812.6073 without restraints) Performing minimization step: 125. Total energy = 3806.4296 kcal/mol (3805.6042 without restraints) Performing minimization step: 126. Total energy = 3799.4499 kcal/mol (3798.6276 without restraints) Performing minimization step: 127. Total energy = 3792.4964 kcal/mol (3791.6772 without restraints) Performing minimization step: 128. Total energy = 3785.5688 kcal/mol (3784.7526 without restraints) Performing minimization step: 129. Total energy = 3778.6668 kcal/mol (3777.8536 without restraints) Performing minimization step: 130. Total energy = 3771.7900 kcal/mol (3770.9798 without restraints) Performing minimization step: 131. Total energy = 3764.9383 kcal/mol (3764.1310 without restraints) Performing minimization step: 132. Total energy = 3758.1113 kcal/mol (3757.3069 without restraints) Performing minimization step: 133. Total energy = 3751.3087 kcal/mol (3750.5072 without restraints) Performing minimization step: 134. Total energy = 3744.5305 kcal/mol (3743.7319 without restraints) Performing minimization step: 135. Total energy = 3737.7760 kcal/mol (3736.9802 without restraints) Performing minimization step: 136. Total energy = 3731.0452 kcal/mol (3730.2521 without restraints) Performing minimization step: 137. Total energy = 3724.3377 kcal/mol (3723.5474 without restraints) Performing minimization step: 138. Total energy = 3717.6534 kcal/mol (3716.8658 without restraints) Performing minimization step: 139. Total energy = 3710.9920 kcal/mol (3710.2071 without restraints) Performing minimization step: 140. Total energy = 3704.3533 kcal/mol (3703.5710 without restraints) Performing minimization step: 141. Total energy = 3697.7370 kcal/mol (3696.9574 without restraints) Performing minimization step: 142. Total energy = 3691.1430 kcal/mol (3690.3660 without restraints) Performing minimization step: 143. Total energy = 3684.5709 kcal/mol (3683.7965 without restraints) Performing minimization step: 144. Total energy = 3678.0206 kcal/mol (3677.2487 without restraints) Performing minimization step: 145. Total energy = 3671.4919 kcal/mol (3670.7226 without restraints) Performing minimization step: 146. Total energy = 3664.9846 kcal/mol (3664.2177 without restraints) Performing minimization step: 147. Total energy = 3658.4984 kcal/mol (3657.7340 without restraints) Performing minimization step: 148. Total energy = 3652.0332 kcal/mol (3651.2712 without restraints) Performing minimization step: 149. Total energy = 3645.5887 kcal/mol (3644.8293 without restraints) Performing minimization step: 150. Total energy = 3639.1648 kcal/mol (3638.4078 without restraints) Performing minimization step: 151. Total energy = 3632.7614 kcal/mol (3632.0068 without restraints) Performing minimization step: 152. Total energy = 3626.3782 kcal/mol (3625.6259 without restraints) Performing minimization step: 153. Total energy = 3620.0150 kcal/mol (3619.2651 without restraints) Performing minimization step: 154. Total energy = 3613.6717 kcal/mol (3612.9243 without restraints) Performing minimization step: 155. Total energy = 3607.3482 kcal/mol (3606.6029 without restraints) Performing minimization step: 156. Total energy = 3601.0441 kcal/mol (3600.3011 without restraints) Performing minimization step: 157. Total energy = 3594.7593 kcal/mol (3594.0187 without restraints) Performing minimization step: 158. Total energy = 3588.4936 kcal/mol (3587.7552 without restraints) Performing minimization step: 159. Total energy = 3582.2471 kcal/mol (3581.5109 without restraints) Performing minimization step: 160. Total energy = 3576.0195 kcal/mol (3575.2856 without restraints) Performing minimization step: 161. Total energy = 3569.8106 kcal/mol (3569.0788 without restraints) Performing minimization step: 162. Total energy = 3563.6203 kcal/mol (3562.8907 without restraints) Performing minimization step: 163. Total energy = 3557.4487 kcal/mol (3556.7213 without restraints) Performing minimization step: 164. Total energy = 3551.2952 kcal/mol (3550.5700 without restraints) Performing minimization step: 165. Total energy = 3545.1599 kcal/mol (3544.4369 without restraints) Performing minimization step: 166. Total energy = 3539.0427 kcal/mol (3538.3217 without restraints) Performing minimization step: 167. Total energy = 3532.9435 kcal/mol (3532.2248 without restraints) Performing minimization step: 168. Total energy = 3526.8621 kcal/mol (3526.1453 without restraints) Performing minimization step: 169. Total energy = 3520.7982 kcal/mol (3520.0835 without restraints) Performing minimization step: 170. Total energy = 3514.7517 kcal/mol (3514.0391 without restraints) Performing minimization step: 171. Total energy = 3508.7228 kcal/mol (3508.0122 without restraints) Performing minimization step: 172. Total energy = 3502.7110 kcal/mol (3502.0025 without restraints) Performing minimization step: 173. Total energy = 3496.7164 kcal/mol (3496.0099 without restraints) Performing minimization step: 174. Total energy = 3490.7390 kcal/mol (3490.0345 without restraints) Performing minimization step: 175. Total energy = 3484.7785 kcal/mol (3484.0759 without restraints) Performing minimization step: 176. Total energy = 3478.8347 kcal/mol (3478.1341 without restraints) Performing minimization step: 177. Total energy = 3472.9076 kcal/mol (3472.2089 without restraints) Performing minimization step: 178. Total energy = 3466.9970 kcal/mol (3466.3004 without restraints) Performing minimization step: 179. Total energy = 3461.1030 kcal/mol (3460.4083 without restraints) Performing minimization step: 180. Total energy = 3455.2254 kcal/mol (3454.5326 without restraints) Performing minimization step: 181. Total energy = 3449.3640 kcal/mol (3448.6731 without restraints) Performing minimization step: 182. Total energy = 3443.5188 kcal/mol (3442.8298 without restraints) Performing minimization step: 183. Total energy = 3437.6897 kcal/mol (3437.0026 without restraints) Performing minimization step: 184. Total energy = 3431.8765 kcal/mol (3431.1913 without restraints) Performing minimization step: 185. Total energy = 3426.0793 kcal/mol (3425.3960 without restraints) Performing minimization step: 186. Total energy = 3420.2979 kcal/mol (3419.6164 without restraints) Performing minimization step: 187. Total energy = 3414.5321 kcal/mol (3413.8525 without restraints) Performing minimization step: 188. Total energy = 3408.7820 kcal/mol (3408.1042 without restraints) Performing minimization step: 189. Total energy = 3403.0474 kcal/mol (3402.3714 without restraints) Performing minimization step: 190. Total energy = 3397.3282 kcal/mol (3396.6540 without restraints) Performing minimization step: 191. Total energy = 3391.6244 kcal/mol (3390.9520 without restraints) Performing minimization step: 192. Total energy = 3385.9358 kcal/mol (3385.2653 without restraints) Performing minimization step: 193. Total energy = 3380.2624 kcal/mol (3379.5936 without restraints) Performing minimization step: 194. Total energy = 3374.6041 kcal/mol (3373.9371 without restraints) Performing minimization step: 195. Total energy = 3368.9608 kcal/mol (3368.2956 without restraints) Performing minimization step: 196. Total energy = 3363.3325 kcal/mol (3362.6690 without restraints) Performing minimization step: 197. Total energy = 3357.7190 kcal/mol (3357.0573 without restraints) Performing minimization step: 198. Total energy = 3352.1203 kcal/mol (3351.4603 without restraints) Performing minimization step: 199. Total energy = 3346.5362 kcal/mol (3345.8780 without restraints) Performing minimization step: 200. Total energy = 3340.9669 kcal/mol (3340.3103 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 201. Total energy = 3335.4120 kcal/mol (3334.7572 without restraints) Performing minimization step: 202. Total energy = 3329.8717 kcal/mol (3329.2186 without restraints) Performing minimization step: 203. Total energy = 3324.3457 kcal/mol (3323.6943 without restraints) Performing minimization step: 204. Total energy = 3318.8340 kcal/mol (3318.1842 without restraints) Performing minimization step: 205. Total energy = 3313.3366 kcal/mol (3312.6886 without restraints) Performing minimization step: 206. Total energy = 3307.8535 kcal/mol (3307.2071 without restraints) Performing minimization step: 207. Total energy = 3302.3845 kcal/mol (3301.7398 without restraints) Performing minimization step: 208. Total energy = 3296.9296 kcal/mol (3296.2865 without restraints) Performing minimization step: 209. Total energy = 3291.4886 kcal/mol (3290.8473 without restraints) Performing minimization step: 210. Total energy = 3286.0617 kcal/mol (3285.4219 without restraints) Performing minimization step: 211. Total energy = 3280.6486 kcal/mol (3280.0104 without restraints) Performing minimization step: 212. Total energy = 3275.2493 kcal/mol (3274.6128 without restraints) Performing minimization step: 213. Total energy = 3269.8638 kcal/mol (3269.2289 without restraints) Performing minimization step: 214. Total energy = 3264.4919 kcal/mol (3263.8587 without restraints) Performing minimization step: 215. Total energy = 3259.1337 kcal/mol (3258.5021 without restraints) Performing minimization step: 216. Total energy = 3253.7891 kcal/mol (3253.1590 without restraints) Performing minimization step: 217. Total energy = 3248.4579 kcal/mol (3247.8295 without restraints) Performing minimization step: 218. Total energy = 3243.1403 kcal/mol (3242.5134 without restraints) Performing minimization step: 219. Total energy = 3237.8360 kcal/mol (3237.2107 without restraints) Performing minimization step: 220. Total energy = 3232.5450 kcal/mol (3231.9213 without restraints) Performing minimization step: 221. Total energy = 3227.2672 kcal/mol (3226.6450 without restraints) Performing minimization step: 222. Total energy = 3222.0028 kcal/mol (3221.3822 without restraints) Performing minimization step: 223. Total energy = 3216.7515 kcal/mol (3216.1325 without restraints) Performing minimization step: 224. Total energy = 3211.5134 kcal/mol (3210.8959 without restraints) Performing minimization step: 225. Total energy = 3206.2883 kcal/mol (3205.6723 without restraints) Performing minimization step: 226. Total energy = 3201.0763 kcal/mol (3200.4619 without restraints) Performing minimization step: 227. Total energy = 3195.8774 kcal/mol (3195.2646 without restraints) Performing minimization step: 228. Total energy = 3190.6914 kcal/mol (3190.0800 without restraints) Performing minimization step: 229. Total energy = 3185.5179 kcal/mol (3184.9080 without restraints) Performing minimization step: 230. Total energy = 3180.3574 kcal/mol (3179.7491 without restraints) Performing minimization step: 231. Total energy = 3175.2098 kcal/mol (3174.6029 without restraints) Performing minimization step: 232. Total energy = 3170.0748 kcal/mol (3169.4695 without restraints) Performing minimization step: 233. Total energy = 3164.9525 kcal/mol (3164.3487 without restraints) Performing minimization step: 234. Total energy = 3159.8429 kcal/mol (3159.2405 without restraints) Performing minimization step: 235. Total energy = 3154.7458 kcal/mol (3154.1449 without restraints) Performing minimization step: 236. Total energy = 3149.6612 kcal/mol (3149.0618 without restraints) Performing minimization step: 237. Total energy = 3144.5891 kcal/mol (3143.9912 without restraints) Performing minimization step: 238. Total energy = 3139.5295 kcal/mol (3138.9330 without restraints) Performing minimization step: 239. Total energy = 3134.4823 kcal/mol (3133.8873 without restraints) Performing minimization step: 240. Total energy = 3129.4474 kcal/mol (3128.8539 without restraints) Performing minimization step: 241. Total energy = 3124.4248 kcal/mol (3123.8327 without restraints) Performing minimization step: 242. Total energy = 3119.4145 kcal/mol (3118.8239 without restraints) Performing minimization step: 243. Total energy = 3114.4165 kcal/mol (3113.8273 without restraints) Performing minimization step: 244. Total energy = 3109.4306 kcal/mol (3108.8428 without restraints) Performing minimization step: 245. Total energy = 3104.4568 kcal/mol (3103.8705 without restraints) Performing minimization step: 246. Total energy = 3099.4952 kcal/mol (3098.9102 without restraints) Performing minimization step: 247. Total energy = 3094.5457 kcal/mol (3093.9622 without restraints) Performing minimization step: 248. Total energy = 3089.6082 kcal/mol (3089.0261 without restraints) Performing minimization step: 249. Total energy = 3084.6825 kcal/mol (3084.1019 without restraints) Performing minimization step: 250. Total energy = 3079.7688 kcal/mol (3079.1896 without restraints) Performing minimization step: 251. Total energy = 3074.8671 kcal/mol (3074.2892 without restraints) Performing minimization step: 252. Total energy = 3069.9771 kcal/mol (3069.4007 without restraints) Performing minimization step: 253. Total energy = 3065.0990 kcal/mol (3064.5239 without restraints) Performing minimization step: 254. Total energy = 3060.2326 kcal/mol (3059.6589 without restraints) Performing minimization step: 255. Total energy = 3055.3780 kcal/mol (3054.8057 without restraints) Performing minimization step: 256. Total energy = 3050.5351 kcal/mol (3049.9642 without restraints) Performing minimization step: 257. Total energy = 3045.7039 kcal/mol (3045.1343 without restraints) Performing minimization step: 258. Total energy = 3040.8843 kcal/mol (3040.3161 without restraints) Performing minimization step: 259. Total energy = 3036.0763 kcal/mol (3035.5095 without restraints) Performing minimization step: 260. Total energy = 3031.2797 kcal/mol (3030.7142 without restraints) Performing minimization step: 261. Total energy = 3026.4947 kcal/mol (3025.9306 without restraints) Performing minimization step: 262. Total energy = 3021.7213 kcal/mol (3021.1585 without restraints) Performing minimization step: 263. Total energy = 3016.9593 kcal/mol (3016.3979 without restraints) Performing minimization step: 264. Total energy = 3012.2087 kcal/mol (3011.6486 without restraints) Performing minimization step: 265. Total energy = 3007.4694 kcal/mol (3006.9107 without restraints) Performing minimization step: 266. Total energy = 3002.7415 kcal/mol (3002.1842 without restraints) Performing minimization step: 267. Total energy = 2998.0250 kcal/mol (2997.4689 without restraints) Performing minimization step: 268. Total energy = 2993.3196 kcal/mol (2992.7649 without restraints) Performing minimization step: 269. Total energy = 2988.6254 kcal/mol (2988.0720 without restraints) Performing minimization step: 270. Total energy = 2983.9425 kcal/mol (2983.3904 without restraints) Performing minimization step: 271. Total energy = 2979.2708 kcal/mol (2978.7200 without restraints) Performing minimization step: 272. Total energy = 2974.6102 kcal/mol (2974.0608 without restraints) Performing minimization step: 273. Total energy = 2969.9607 kcal/mol (2969.4126 without restraints) Performing minimization step: 274. Total energy = 2965.3224 kcal/mol (2964.7755 without restraints) Performing minimization step: 275. Total energy = 2960.6950 kcal/mol (2960.1495 without restraints) Performing minimization step: 276. Total energy = 2956.0787 kcal/mol (2955.5344 without restraints) Performing minimization step: 277. Total energy = 2951.4733 kcal/mol (2950.9304 without restraints) Performing minimization step: 278. Total energy = 2946.8789 kcal/mol (2946.3373 without restraints) Performing minimization step: 279. Total energy = 2942.2954 kcal/mol (2941.7550 without restraints) Performing minimization step: 280. Total energy = 2937.7228 kcal/mol (2937.1837 without restraints) Performing minimization step: 281. Total energy = 2933.1610 kcal/mol (2932.6232 without restraints) Performing minimization step: 282. Total energy = 2928.6100 kcal/mol (2928.0735 without restraints) Performing minimization step: 283. Total energy = 2924.0699 kcal/mol (2923.5346 without restraints) Performing minimization step: 284. Total energy = 2919.5405 kcal/mol (2919.0065 without restraints) Performing minimization step: 285. Total energy = 2915.0218 kcal/mol (2914.4891 without restraints) Performing minimization step: 286. Total energy = 2910.5138 kcal/mol (2909.9823 without restraints) Performing minimization step: 287. Total energy = 2906.0165 kcal/mol (2905.4863 without restraints) Performing minimization step: 288. Total energy = 2901.5298 kcal/mol (2901.0008 without restraints) Performing minimization step: 289. Total energy = 2897.0537 kcal/mol (2896.5260 without restraints) Performing minimization step: 290. Total energy = 2892.5880 kcal/mol (2892.0615 without restraints) Performing minimization step: 291. Total energy = 2888.1330 kcal/mol (2887.6078 without restraints) Performing minimization step: 292. Total energy = 2883.6886 kcal/mol (2883.1646 without restraints) Performing minimization step: 293. Total energy = 2879.2547 kcal/mol (2878.7319 without restraints) Performing minimization step: 294. Total energy = 2874.8312 kcal/mol (2874.3097 without restraints) Performing minimization step: 295. Total energy = 2870.4181 kcal/mol (2869.8979 without restraints) Performing minimization step: 296. Total energy = 2866.0155 kcal/mol (2865.4964 without restraints) Performing minimization step: 297. Total energy = 2861.6232 kcal/mol (2861.1054 without restraints) Performing minimization step: 298. Total energy = 2857.2413 kcal/mol (2856.7247 without restraints) Performing minimization step: 299. Total energy = 2852.8697 kcal/mol (2852.3543 without restraints) Performing minimization step: 300. Total energy = 2848.5084 kcal/mol (2847.9942 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 301. Total energy = 2844.1573 kcal/mol (2843.6444 without restraints) Performing minimization step: 302. Total energy = 2839.8165 kcal/mol (2839.3048 without restraints) Performing minimization step: 303. Total energy = 2835.4859 kcal/mol (2834.9754 without restraints) Performing minimization step: 304. Total energy = 2831.1655 kcal/mol (2830.6561 without restraints) Performing minimization step: 305. Total energy = 2826.8552 kcal/mol (2826.3471 without restraints) Performing minimization step: 306. Total energy = 2822.5551 kcal/mol (2822.0481 without restraints) Performing minimization step: 307. Total energy = 2818.2651 kcal/mol (2817.7593 without restraints) Performing minimization step: 308. Total energy = 2813.9851 kcal/mol (2813.4805 without restraints) Performing minimization step: 309. Total energy = 2809.7152 kcal/mol (2809.2118 without restraints) Performing minimization step: 310. Total energy = 2805.4553 kcal/mol (2804.9531 without restraints) Performing minimization step: 311. Total energy = 2801.2055 kcal/mol (2800.7045 without restraints) Performing minimization step: 312. Total energy = 2796.9656 kcal/mol (2796.4657 without restraints) Performing minimization step: 313. Total energy = 2792.7354 kcal/mol (2792.2367 without restraints) Performing minimization step: 314. Total energy = 2788.5153 kcal/mol (2788.0177 without restraints) Performing minimization step: 315. Total energy = 2784.3051 kcal/mol (2783.8087 without restraints) Performing minimization step: 316. Total energy = 2780.1047 kcal/mol (2779.6095 without restraints) Performing minimization step: 317. Total energy = 2775.9142 kcal/mol (2775.4202 without restraints) Performing minimization step: 318. Total energy = 2771.7335 kcal/mol (2771.2406 without restraints) Performing minimization step: 319. Total energy = 2767.5624 kcal/mol (2767.0706 without restraints) Performing minimization step: 320. Total energy = 2763.4012 kcal/mol (2762.9106 without restraints) Performing minimization step: 321. Total energy = 2759.2498 kcal/mol (2758.7604 without restraints) Performing minimization step: 322. Total energy = 2755.1081 kcal/mol (2754.6198 without restraints) Performing minimization step: 323. Total energy = 2750.9761 kcal/mol (2750.4890 without restraints) Performing minimization step: 324. Total energy = 2746.8537 kcal/mol (2746.3677 without restraints) Performing minimization step: 325. Total energy = 2742.7411 kcal/mol (2742.2562 without restraints) Performing minimization step: 326. Total energy = 2738.6380 kcal/mol (2738.1544 without restraints) Performing minimization step: 327. Total energy = 2734.5446 kcal/mol (2734.0620 without restraints) Performing minimization step: 328. Total energy = 2730.4606 kcal/mol (2729.9792 without restraints) Performing minimization step: 329. Total energy = 2726.3862 kcal/mol (2725.9058 without restraints) Performing minimization step: 330. Total energy = 2722.3212 kcal/mol (2721.8420 without restraints) Performing minimization step: 331. Total energy = 2718.2658 kcal/mol (2717.7877 without restraints) Performing minimization step: 332. Total energy = 2714.2200 kcal/mol (2713.7430 without restraints) Performing minimization step: 333. Total energy = 2710.1835 kcal/mol (2709.7076 without restraints) Performing minimization step: 334. Total energy = 2706.1563 kcal/mol (2705.6815 without restraints) Performing minimization step: 335. Total energy = 2702.1385 kcal/mol (2701.6649 without restraints) Performing minimization step: 336. Total energy = 2698.1301 kcal/mol (2697.6576 without restraints) Performing minimization step: 337. Total energy = 2694.1311 kcal/mol (2693.6596 without restraints) Performing minimization step: 338. Total energy = 2690.1413 kcal/mol (2689.6710 without restraints) Performing minimization step: 339. Total energy = 2686.1609 kcal/mol (2685.6916 without restraints) Performing minimization step: 340. Total energy = 2682.1897 kcal/mol (2681.7215 without restraints) Performing minimization step: 341. Total energy = 2678.2278 kcal/mol (2677.7607 without restraints) Performing minimization step: 342. Total energy = 2674.2749 kcal/mol (2673.8089 without restraints) Performing minimization step: 343. Total energy = 2670.3314 kcal/mol (2669.8665 without restraints) Performing minimization step: 344. Total energy = 2666.3970 kcal/mol (2665.9332 without restraints) Performing minimization step: 345. Total energy = 2662.4718 kcal/mol (2662.0091 without restraints) Performing minimization step: 346. Total energy = 2658.5557 kcal/mol (2658.0941 without restraints) Performing minimization step: 347. Total energy = 2654.6488 kcal/mol (2654.1881 without restraints) Performing minimization step: 348. Total energy = 2650.7508 kcal/mol (2650.2913 without restraints) Performing minimization step: 349. Total energy = 2646.8620 kcal/mol (2646.4035 without restraints) Performing minimization step: 350. Total energy = 2642.9822 kcal/mol (2642.5247 without restraints) Performing minimization step: 351. Total energy = 2639.1113 kcal/mol (2638.6550 without restraints) Performing minimization step: 352. Total energy = 2635.2495 kcal/mol (2634.7942 without restraints) Performing minimization step: 353. Total energy = 2631.3967 kcal/mol (2630.9426 without restraints) Performing minimization step: 354. Total energy = 2627.5529 kcal/mol (2627.0997 without restraints) Performing minimization step: 355. Total energy = 2623.7179 kcal/mol (2623.2657 without restraints) Performing minimization step: 356. Total energy = 2619.8918 kcal/mol (2619.4407 without restraints) Performing minimization step: 357. Total energy = 2616.0745 kcal/mol (2615.6245 without restraints) Performing minimization step: 358. Total energy = 2612.2661 kcal/mol (2611.8171 without restraints) Performing minimization step: 359. Total energy = 2608.4665 kcal/mol (2608.0185 without restraints) Performing minimization step: 360. Total energy = 2604.6756 kcal/mol (2604.2286 without restraints) Performing minimization step: 361. Total energy = 2600.8935 kcal/mol (2600.4477 without restraints) Performing minimization step: 362. Total energy = 2597.1203 kcal/mol (2596.6754 without restraints) Performing minimization step: 363. Total energy = 2593.3558 kcal/mol (2592.9120 without restraints) Performing minimization step: 364. Total energy = 2589.6000 kcal/mol (2589.1572 without restraints) Performing minimization step: 365. Total energy = 2585.8529 kcal/mol (2585.4111 without restraints) Performing minimization step: 366. Total energy = 2582.1144 kcal/mol (2581.6737 without restraints) Performing minimization step: 367. Total energy = 2578.3844 kcal/mol (2577.9447 without restraints) Performing minimization step: 368. Total energy = 2574.6632 kcal/mol (2574.2245 without restraints) Performing minimization step: 369. Total energy = 2570.9507 kcal/mol (2570.5130 without restraints) Performing minimization step: 370. Total energy = 2567.2466 kcal/mol (2566.8100 without restraints) Performing minimization step: 371. Total energy = 2563.5512 kcal/mol (2563.1155 without restraints) Performing minimization step: 372. Total energy = 2559.8643 kcal/mol (2559.4296 without restraints) Performing minimization step: 373. Total energy = 2556.1859 kcal/mol (2555.7522 without restraints) Performing minimization step: 374. Total energy = 2552.5159 kcal/mol (2552.0833 without restraints) Performing minimization step: 375. Total energy = 2548.8547 kcal/mol (2548.4230 without restraints) Performing minimization step: 376. Total energy = 2545.2017 kcal/mol (2544.7710 without restraints) Performing minimization step: 377. Total energy = 2541.5571 kcal/mol (2541.1274 without restraints) Performing minimization step: 378. Total energy = 2537.9209 kcal/mol (2537.4922 without restraints) Performing minimization step: 379. Total energy = 2534.2931 kcal/mol (2533.8654 without restraints) Performing minimization step: 380. Total energy = 2530.6737 kcal/mol (2530.2469 without restraints) Performing minimization step: 381. Total energy = 2527.0625 kcal/mol (2526.6368 without restraints) Performing minimization step: 382. Total energy = 2523.4597 kcal/mol (2523.0350 without restraints) Performing minimization step: 383. Total energy = 2519.8652 kcal/mol (2519.4414 without restraints) Performing minimization step: 384. Total energy = 2516.2792 kcal/mol (2515.8563 without restraints) Performing minimization step: 385. Total energy = 2512.7012 kcal/mol (2512.2793 without restraints) Performing minimization step: 386. Total energy = 2509.1314 kcal/mol (2508.7105 without restraints) Performing minimization step: 387. Total energy = 2505.5698 kcal/mol (2505.1499 without restraints) Performing minimization step: 388. Total energy = 2502.0164 kcal/mol (2501.5975 without restraints) Performing minimization step: 389. Total energy = 2498.4711 kcal/mol (2498.0532 without restraints) Performing minimization step: 390. Total energy = 2494.9340 kcal/mol (2494.5170 without restraints) Performing minimization step: 391. Total energy = 2491.4050 kcal/mol (2490.9890 without restraints) Performing minimization step: 392. Total energy = 2487.8842 kcal/mol (2487.4691 without restraints) Performing minimization step: 393. Total energy = 2484.3714 kcal/mol (2483.9572 without restraints) Performing minimization step: 394. Total energy = 2480.8666 kcal/mol (2480.4534 without restraints) Performing minimization step: 395. Total energy = 2477.3699 kcal/mol (2476.9576 without restraints) Performing minimization step: 396. Total energy = 2473.8812 kcal/mol (2473.4699 without restraints) Performing minimization step: 397. Total energy = 2470.4005 kcal/mol (2469.9901 without restraints) Performing minimization step: 398. Total energy = 2466.9277 kcal/mol (2466.5183 without restraints) Performing minimization step: 399. Total energy = 2463.4629 kcal/mol (2463.0544 without restraints) Performing minimization step: 400. Total energy = 2460.0059 kcal/mol (2459.5983 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 401. Total energy = 2456.5569 kcal/mol (2456.1502 without restraints) Performing minimization step: 402. Total energy = 2453.1158 kcal/mol (2452.7101 without restraints) Performing minimization step: 403. Total energy = 2449.6826 kcal/mol (2449.2778 without restraints) Performing minimization step: 404. Total energy = 2446.2572 kcal/mol (2445.8533 without restraints) Performing minimization step: 405. Total energy = 2442.8399 kcal/mol (2442.4369 without restraints) Performing minimization step: 406. Total energy = 2439.4301 kcal/mol (2439.0281 without restraints) Performing minimization step: 407. Total energy = 2436.0281 kcal/mol (2435.6270 without restraints) Performing minimization step: 408. Total energy = 2432.6339 kcal/mol (2432.2337 without restraints) Performing minimization step: 409. Total energy = 2429.2474 kcal/mol (2428.8482 without restraints) Performing minimization step: 410. Total energy = 2425.8687 kcal/mol (2425.4703 without restraints) Performing minimization step: 411. Total energy = 2422.4976 kcal/mol (2422.1001 without restraints) Performing minimization step: 412. Total energy = 2419.1342 kcal/mol (2418.7376 without restraints) Performing minimization step: 413. Total energy = 2415.7784 kcal/mol (2415.3828 without restraints) Performing minimization step: 414. Total energy = 2412.4303 kcal/mol (2412.0356 without restraints) Performing minimization step: 415. Total energy = 2409.0898 kcal/mol (2408.6960 without restraints) Performing minimization step: 416. Total energy = 2405.7569 kcal/mol (2405.3639 without restraints) Performing minimization step: 417. Total energy = 2402.4315 kcal/mol (2402.0395 without restraints) Performing minimization step: 418. Total energy = 2399.1137 kcal/mol (2398.7226 without restraints) Performing minimization step: 419. Total energy = 2395.8035 kcal/mol (2395.4132 without restraints) Performing minimization step: 420. Total energy = 2392.5007 kcal/mol (2392.1113 without restraints) Performing minimization step: 421. Total energy = 2389.2055 kcal/mol (2388.8170 without restraints) Performing minimization step: 422. Total energy = 2385.9177 kcal/mol (2385.5301 without restraints) Performing minimization step: 423. Total energy = 2382.6374 kcal/mol (2382.2506 without restraints) Performing minimization step: 424. Total energy = 2379.3645 kcal/mol (2378.9786 without restraints) Performing minimization step: 425. Total energy = 2376.0990 kcal/mol (2375.7139 without restraints) Performing minimization step: 426. Total energy = 2372.8408 kcal/mol (2372.4567 without restraints) Performing minimization step: 427. Total energy = 2369.5901 kcal/mol (2369.2068 without restraints) Performing minimization step: 428. Total energy = 2366.3466 kcal/mol (2365.9642 without restraints) Performing minimization step: 429. Total energy = 2363.1105 kcal/mol (2362.7290 without restraints) Performing minimization step: 430. Total energy = 2359.8818 kcal/mol (2359.5011 without restraints) Performing minimization step: 431. Total energy = 2356.6603 kcal/mol (2356.2804 without restraints) Performing minimization step: 432. Total energy = 2353.4460 kcal/mol (2353.0670 without restraints) Performing minimization step: 433. Total energy = 2350.2390 kcal/mol (2349.8609 without restraints) Performing minimization step: 434. Total energy = 2347.0392 kcal/mol (2346.6620 without restraints) Performing minimization step: 435. Total energy = 2343.8467 kcal/mol (2343.4703 without restraints) Performing minimization step: 436. Total energy = 2340.6612 kcal/mol (2340.2856 without restraints) Performing minimization step: 437. Total energy = 2337.4830 kcal/mol (2337.1082 without restraints) Performing minimization step: 438. Total energy = 2334.3119 kcal/mol (2333.9380 without restraints) Performing minimization step: 439. Total energy = 2331.1479 kcal/mol (2330.7749 without restraints) Performing minimization step: 440. Total energy = 2327.9910 kcal/mol (2327.6188 without restraints) Performing minimization step: 441. Total energy = 2324.8410 kcal/mol (2324.4696 without restraints) Performing minimization step: 442. Total energy = 2321.6983 kcal/mol (2321.3277 without restraints) Performing minimization step: 443. Total energy = 2318.5626 kcal/mol (2318.1929 without restraints) Performing minimization step: 444. Total energy = 2315.4340 kcal/mol (2315.0651 without restraints) Performing minimization step: 445. Total energy = 2312.3123 kcal/mol (2311.9443 without restraints) Performing minimization step: 446. Total energy = 2309.1976 kcal/mol (2308.8304 without restraints) Performing minimization step: 447. Total energy = 2306.0899 kcal/mol (2305.7235 without restraints) Performing minimization step: 448. Total energy = 2302.9892 kcal/mol (2302.6236 without restraints) Performing minimization step: 449. Total energy = 2299.8953 kcal/mol (2299.5306 without restraints) Performing minimization step: 450. Total energy = 2296.8084 kcal/mol (2296.4444 without restraints) Performing minimization step: 451. Total energy = 2293.7283 kcal/mol (2293.3652 without restraints) Performing minimization step: 452. Total energy = 2290.6551 kcal/mol (2290.2928 without restraints) Performing minimization step: 453. Total energy = 2287.5888 kcal/mol (2287.2273 without restraints) Performing minimization step: 454. Total energy = 2284.5293 kcal/mol (2284.1686 without restraints) Performing minimization step: 455. Total energy = 2281.4766 kcal/mol (2281.1166 without restraints) Performing minimization step: 456. Total energy = 2278.4306 kcal/mol (2278.0715 without restraints) Performing minimization step: 457. Total energy = 2275.3915 kcal/mol (2275.0331 without restraints) Performing minimization step: 458. Total energy = 2272.3590 kcal/mol (2272.0015 without restraints) Performing minimization step: 459. Total energy = 2269.3333 kcal/mol (2268.9766 without restraints) Performing minimization step: 460. Total energy = 2266.3144 kcal/mol (2265.9584 without restraints) Performing minimization step: 461. Total energy = 2263.3021 kcal/mol (2262.9469 without restraints) Performing minimization step: 462. Total energy = 2260.2964 kcal/mol (2259.9420 without restraints) Performing minimization step: 463. Total energy = 2257.2974 kcal/mol (2256.9438 without restraints) Performing minimization step: 464. Total energy = 2254.3051 kcal/mol (2253.9523 without restraints) Performing minimization step: 465. Total energy = 2251.3192 kcal/mol (2250.9671 without restraints) Performing minimization step: 466. Total energy = 2248.3399 kcal/mol (2247.9887 without restraints) Performing minimization step: 467. Total energy = 2245.3674 kcal/mol (2245.0169 without restraints) Performing minimization step: 468. Total energy = 2242.4013 kcal/mol (2242.0516 without restraints) Performing minimization step: 469. Total energy = 2239.4415 kcal/mol (2239.0925 without restraints) Performing minimization step: 470. Total energy = 2236.4884 kcal/mol (2236.1403 without restraints) Performing minimization step: 471. Total energy = 2233.5419 kcal/mol (2233.1945 without restraints) Performing minimization step: 472. Total energy = 2230.6019 kcal/mol (2230.2553 without restraints) Performing minimization step: 473. Total energy = 2227.6683 kcal/mol (2227.3224 without restraints) Performing minimization step: 474. Total energy = 2224.7412 kcal/mol (2224.3961 without restraints) Performing minimization step: 475. Total energy = 2221.8205 kcal/mol (2221.4761 without restraints) Performing minimization step: 476. Total energy = 2218.9061 kcal/mol (2218.5625 without restraints) Performing minimization step: 477. Total energy = 2215.9982 kcal/mol (2215.6553 without restraints) Performing minimization step: 478. Total energy = 2213.0966 kcal/mol (2212.7545 without restraints) Performing minimization step: 479. Total energy = 2210.2014 kcal/mol (2209.8600 without restraints) Performing minimization step: 480. Total energy = 2207.3124 kcal/mol (2206.9718 without restraints) Performing minimization step: 481. Total energy = 2204.4299 kcal/mol (2204.0900 without restraints) Performing minimization step: 482. Total energy = 2201.5535 kcal/mol (2201.2144 without restraints) Performing minimization step: 483. Total energy = 2198.6835 kcal/mol (2198.3451 without restraints) Performing minimization step: 484. Total energy = 2195.8197 kcal/mol (2195.4820 without restraints) Performing minimization step: 485. Total energy = 2192.9621 kcal/mol (2192.6251 without restraints) Performing minimization step: 486. Total energy = 2190.1107 kcal/mol (2189.7745 without restraints) Performing minimization step: 487. Total energy = 2187.2655 kcal/mol (2186.9300 without restraints) Performing minimization step: 488. Total energy = 2184.4265 kcal/mol (2184.0917 without restraints) Performing minimization step: 489. Total energy = 2181.5936 kcal/mol (2181.2596 without restraints) Performing minimization step: 490. Total energy = 2178.7668 kcal/mol (2178.4336 without restraints) Performing minimization step: 491. Total energy = 2175.9462 kcal/mol (2175.6137 without restraints) Performing minimization step: 492. Total energy = 2173.1317 kcal/mol (2172.7998 without restraints) Performing minimization step: 493. Total energy = 2170.3232 kcal/mol (2169.9921 without restraints) Performing minimization step: 494. Total energy = 2167.5208 kcal/mol (2167.1904 without restraints) Performing minimization step: 495. Total energy = 2164.7245 kcal/mol (2164.3948 without restraints) Performing minimization step: 496. Total energy = 2161.9341 kcal/mol (2161.6051 without restraints) Performing minimization step: 497. Total energy = 2159.1496 kcal/mol (2158.8213 without restraints) Performing minimization step: 498. Total energy = 2156.3713 kcal/mol (2156.0437 without restraints) Performing minimization step: 499. Total energy = 2153.5989 kcal/mol (2153.2720 without restraints) Performing minimization step: 500. Total energy = 2150.8325 kcal/mol (2150.5063 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 501. Total energy = 2148.0720 kcal/mol (2147.7465 without restraints) Performing minimization step: 502. Total energy = 2145.3174 kcal/mol (2144.9926 without restraints) Performing minimization step: 503. Total energy = 2142.5687 kcal/mol (2142.2447 without restraints) Performing minimization step: 504. Total energy = 2139.8259 kcal/mol (2139.5025 without restraints) Performing minimization step: 505. Total energy = 2137.0889 kcal/mol (2136.7662 without restraints) Performing minimization step: 506. Total energy = 2134.3579 kcal/mol (2134.0359 without restraints) Performing minimization step: 507. Total energy = 2131.6326 kcal/mol (2131.3113 without restraints) Performing minimization step: 508. Total energy = 2128.9131 kcal/mol (2128.5924 without restraints) Performing minimization step: 509. Total energy = 2126.1994 kcal/mol (2125.8794 without restraints) Performing minimization step: 510. Total energy = 2123.4917 kcal/mol (2123.1724 without restraints) Performing minimization step: 511. Total energy = 2120.7895 kcal/mol (2120.4709 without restraints) Performing minimization step: 512. Total energy = 2118.0930 kcal/mol (2117.7751 without restraints) Performing minimization step: 513. Total energy = 2115.4023 kcal/mol (2115.0850 without restraints) Performing minimization step: 514. Total energy = 2112.7172 kcal/mol (2112.4006 without restraints) Performing minimization step: 515. Total energy = 2110.0379 kcal/mol (2109.7219 without restraints) Performing minimization step: 516. Total energy = 2107.3642 kcal/mol (2107.0489 without restraints) Performing minimization step: 517. Total energy = 2104.6961 kcal/mol (2104.3815 without restraints) Performing minimization step: 518. Total energy = 2102.0338 kcal/mol (2101.7199 without restraints) Performing minimization step: 519. Total energy = 2099.3770 kcal/mol (2099.0638 without restraints) Performing minimization step: 520. Total energy = 2096.7258 kcal/mol (2096.4132 without restraints) Performing minimization step: 521. Total energy = 2094.0801 kcal/mol (2093.7681 without restraints) Performing minimization step: 522. Total energy = 2091.4400 kcal/mol (2091.1287 without restraints) Performing minimization step: 523. Total energy = 2088.8054 kcal/mol (2088.4947 without restraints) Performing minimization step: 524. Total energy = 2086.1763 kcal/mol (2085.8663 without restraints) Performing minimization step: 525. Total energy = 2083.5528 kcal/mol (2083.2434 without restraints) Performing minimization step: 526. Total energy = 2080.9347 kcal/mol (2080.6260 without restraints) Performing minimization step: 527. Total energy = 2078.3221 kcal/mol (2078.0140 without restraints) Performing minimization step: 528. Total energy = 2075.7149 kcal/mol (2075.4075 without restraints) Performing minimization step: 529. Total energy = 2073.1132 kcal/mol (2072.8064 without restraints) Performing minimization step: 530. Total energy = 2070.5169 kcal/mol (2070.2107 without restraints) Performing minimization step: 531. Total energy = 2067.9262 kcal/mol (2067.6207 without restraints) Performing minimization step: 532. Total energy = 2065.3406 kcal/mol (2065.0358 without restraints) Performing minimization step: 533. Total energy = 2062.7604 kcal/mol (2062.4562 without restraints) Performing minimization step: 534. Total energy = 2060.1854 kcal/mol (2059.8818 without restraints) Performing minimization step: 535. Total energy = 2057.6161 kcal/mol (2057.3132 without restraints) Performing minimization step: 536. Total energy = 2055.0519 kcal/mol (2054.7496 without restraints) Performing minimization step: 537. Total energy = 2052.4930 kcal/mol (2052.1913 without restraints) Performing minimization step: 538. Total energy = 2049.9394 kcal/mol (2049.6383 without restraints) Performing minimization step: 539. Total energy = 2047.3910 kcal/mol (2047.0906 without restraints) Performing minimization step: 540. Total energy = 2044.8479 kcal/mol (2044.5481 without restraints) Performing minimization step: 541. Total energy = 2042.3102 kcal/mol (2042.0110 without restraints) Performing minimization step: 542. Total energy = 2039.7775 kcal/mol (2039.4789 without restraints) Performing minimization step: 543. Total energy = 2037.2500 kcal/mol (2036.9520 without restraints) Performing minimization step: 544. Total energy = 2034.7277 kcal/mol (2034.4303 without restraints) Performing minimization step: 545. Total energy = 2032.2106 kcal/mol (2031.9138 without restraints) Performing minimization step: 546. Total energy = 2029.6986 kcal/mol (2029.4024 without restraints) Performing minimization step: 547. Total energy = 2027.1917 kcal/mol (2026.8961 without restraints) Performing minimization step: 548. Total energy = 2024.6899 kcal/mol (2024.3949 without restraints) Performing minimization step: 549. Total energy = 2022.1934 kcal/mol (2021.8990 without restraints) Performing minimization step: 550. Total energy = 2019.7018 kcal/mol (2019.4080 without restraints) Performing minimization step: 551. Total energy = 2017.2153 kcal/mol (2016.9221 without restraints) Performing minimization step: 552. Total energy = 2014.7338 kcal/mol (2014.4412 without restraints) Performing minimization step: 553. Total energy = 2012.2573 kcal/mol (2011.9653 without restraints) Performing minimization step: 554. Total energy = 2009.7858 kcal/mol (2009.4944 without restraints) Performing minimization step: 555. Total energy = 2007.3193 kcal/mol (2007.0285 without restraints) Performing minimization step: 556. Total energy = 2004.8581 kcal/mol (2004.5678 without restraints) Performing minimization step: 557. Total energy = 2002.4015 kcal/mol (2002.1119 without restraints) Performing minimization step: 558. Total energy = 1999.9499 kcal/mol (1999.6609 without restraints) Performing minimization step: 559. Total energy = 1997.5033 kcal/mol (1997.2148 without restraints) Performing minimization step: 560. Total energy = 1995.0617 kcal/mol (1994.7739 without restraints) Performing minimization step: 561. Total energy = 1992.6250 kcal/mol (1992.3376 without restraints) Performing minimization step: 562. Total energy = 1990.1930 kcal/mol (1989.9063 without restraints) Performing minimization step: 563. Total energy = 1987.7661 kcal/mol (1987.4800 without restraints) Performing minimization step: 564. Total energy = 1985.3439 kcal/mol (1985.0583 without restraints) Performing minimization step: 565. Total energy = 1982.9265 kcal/mol (1982.6415 without restraints) Performing minimization step: 566. Total energy = 1980.5139 kcal/mol (1980.2294 without restraints) Performing minimization step: 567. Total energy = 1978.1061 kcal/mol (1977.8222 without restraints) Performing minimization step: 568. Total energy = 1975.7031 kcal/mol (1975.4197 without restraints) Performing minimization step: 569. Total energy = 1973.3049 kcal/mol (1973.0221 without restraints) Performing minimization step: 570. Total energy = 1970.9116 kcal/mol (1970.6294 without restraints) Performing minimization step: 571. Total energy = 1968.5229 kcal/mol (1968.2412 without restraints) Performing minimization step: 572. Total energy = 1966.1389 kcal/mol (1965.8578 without restraints) Performing minimization step: 573. Total energy = 1963.7598 kcal/mol (1963.4792 without restraints) Performing minimization step: 574. Total energy = 1961.3851 kcal/mol (1961.1051 without restraints) Performing minimization step: 575. Total energy = 1959.0152 kcal/mol (1958.7358 without restraints) Performing minimization step: 576. Total energy = 1956.6500 kcal/mol (1956.3710 without restraints) Performing minimization step: 577. Total energy = 1954.2893 kcal/mol (1954.0110 without restraints) Performing minimization step: 578. Total energy = 1951.9333 kcal/mol (1951.6555 without restraints) Performing minimization step: 579. Total energy = 1949.5819 kcal/mol (1949.3046 without restraints) Performing minimization step: 580. Total energy = 1947.2351 kcal/mol (1946.9584 without restraints) Performing minimization step: 581. Total energy = 1944.8929 kcal/mol (1944.6167 without restraints) Performing minimization step: 582. Total energy = 1942.5553 kcal/mol (1942.2797 without restraints) Performing minimization step: 583. Total energy = 1940.2220 kcal/mol (1939.9469 without restraints) Performing minimization step: 584. Total energy = 1937.8935 kcal/mol (1937.6189 without restraints) Performing minimization step: 585. Total energy = 1935.5694 kcal/mol (1935.2954 without restraints) Performing minimization step: 586. Total energy = 1933.2499 kcal/mol (1932.9764 without restraints) Performing minimization step: 587. Total energy = 1930.9349 kcal/mol (1930.6619 without restraints) Performing minimization step: 588. Total energy = 1928.6244 kcal/mol (1928.3519 without restraints) Performing minimization step: 589. Total energy = 1926.3185 kcal/mol (1926.0466 without restraints) Performing minimization step: 590. Total energy = 1924.0169 kcal/mol (1923.7455 without restraints) Performing minimization step: 591. Total energy = 1921.7199 kcal/mol (1921.4490 without restraints) Performing minimization step: 592. Total energy = 1919.4272 kcal/mol (1919.1568 without restraints) Performing minimization step: 593. Total energy = 1917.1388 kcal/mol (1916.8690 without restraints) Performing minimization step: 594. Total energy = 1914.8548 kcal/mol (1914.5855 without restraints) Performing minimization step: 595. Total energy = 1912.5753 kcal/mol (1912.3065 without restraints) Performing minimization step: 596. Total energy = 1910.3003 kcal/mol (1910.0320 without restraints) Performing minimization step: 597. Total energy = 1908.0294 kcal/mol (1907.7616 without restraints) Performing minimization step: 598. Total energy = 1905.7629 kcal/mol (1905.4957 without restraints) Performing minimization step: 599. Total energy = 1903.5007 kcal/mol (1903.2339 without restraints) Performing minimization step: 600. Total energy = 1901.2428 kcal/mol (1900.9765 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 601. Total energy = 1898.9892 kcal/mol (1898.7234 without restraints) Performing minimization step: 602. Total energy = 1896.7398 kcal/mol (1896.4746 without restraints) Performing minimization step: 603. Total energy = 1894.4947 kcal/mol (1894.2300 without restraints) Performing minimization step: 604. Total energy = 1892.2539 kcal/mol (1891.9897 without restraints) Performing minimization step: 605. Total energy = 1890.0173 kcal/mol (1889.7536 without restraints) Performing minimization step: 606. Total energy = 1887.7849 kcal/mol (1887.5216 without restraints) Performing minimization step: 607. Total energy = 1885.5567 kcal/mol (1885.2939 without restraints) Performing minimization step: 608. Total energy = 1883.3327 kcal/mol (1883.0704 without restraints) Performing minimization step: 609. Total energy = 1881.1132 kcal/mol (1880.8515 without restraints) Performing minimization step: 610. Total energy = 1878.8976 kcal/mol (1878.6363 without restraints) Performing minimization step: 611. Total energy = 1876.6861 kcal/mol (1876.4253 without restraints) Performing minimization step: 612. Total energy = 1874.4786 kcal/mol (1874.2182 without restraints) Performing minimization step: 613. Total energy = 1872.2753 kcal/mol (1872.0155 without restraints) Performing minimization step: 614. Total energy = 1870.0761 kcal/mol (1869.8168 without restraints) Performing minimization step: 615. Total energy = 1867.8811 kcal/mol (1867.6222 without restraints) Performing minimization step: 616. Total energy = 1865.6901 kcal/mol (1865.4318 without restraints) Performing minimization step: 617. Total energy = 1863.5032 kcal/mol (1863.2454 without restraints) Performing minimization step: 618. Total energy = 1861.3204 kcal/mol (1861.0630 without restraints) Performing minimization step: 619. Total energy = 1859.1416 kcal/mol (1858.8847 without restraints) Performing minimization step: 620. Total energy = 1856.9668 kcal/mol (1856.7104 without restraints) Performing minimization step: 621. Total energy = 1854.7961 kcal/mol (1854.5401 without restraints) Performing minimization step: 622. Total energy = 1852.6293 kcal/mol (1852.3738 without restraints) Performing minimization step: 623. Total energy = 1850.4666 kcal/mol (1850.2115 without restraints) Performing minimization step: 624. Total energy = 1848.3078 kcal/mol (1848.0532 without restraints) Performing minimization step: 625. Total energy = 1846.1530 kcal/mol (1845.8989 without restraints) Performing minimization step: 626. Total energy = 1844.0019 kcal/mol (1843.7482 without restraints) Performing minimization step: 627. Total energy = 1841.8549 kcal/mol (1841.6017 without restraints) Performing minimization step: 628. Total energy = 1839.7119 kcal/mol (1839.4592 without restraints) Performing minimization step: 629. Total energy = 1837.5728 kcal/mol (1837.3205 without restraints) Performing minimization step: 630. Total energy = 1835.4376 kcal/mol (1835.1858 without restraints) Performing minimization step: 631. Total energy = 1833.3062 kcal/mol (1833.0549 without restraints) Performing minimization step: 632. Total energy = 1831.1789 kcal/mol (1830.9281 without restraints) Performing minimization step: 633. Total energy = 1829.0554 kcal/mol (1828.8049 without restraints) Performing minimization step: 634. Total energy = 1826.9356 kcal/mol (1826.6856 without restraints) Performing minimization step: 635. Total energy = 1824.8197 kcal/mol (1824.5702 without restraints) Performing minimization step: 636. Total energy = 1822.7076 kcal/mol (1822.4585 without restraints) Performing minimization step: 637. Total energy = 1820.5995 kcal/mol (1820.3508 without restraints) Performing minimization step: 638. Total energy = 1818.4950 kcal/mol (1818.2468 without restraints) Performing minimization step: 639. Total energy = 1816.3942 kcal/mol (1816.1465 without restraints) Performing minimization step: 640. Total energy = 1814.2973 kcal/mol (1814.0500 without restraints) Performing minimization step: 641. Total energy = 1812.2041 kcal/mol (1811.9572 without restraints) Performing minimization step: 642. Total energy = 1810.1148 kcal/mol (1809.8684 without restraints) Performing minimization step: 643. Total energy = 1808.0291 kcal/mol (1807.7831 without restraints) Performing minimization step: 644. Total energy = 1805.9471 kcal/mol (1805.7016 without restraints) Performing minimization step: 645. Total energy = 1803.8688 kcal/mol (1803.6237 without restraints) Performing minimization step: 646. Total energy = 1801.7944 kcal/mol (1801.5500 without restraints) Performing minimization step: 647. Total energy = 1799.7237 kcal/mol (1799.4795 without restraints) Performing minimization step: 648. Total energy = 1797.6564 kcal/mol (1797.4127 without restraints) Performing minimization step: 649. Total energy = 1795.5929 kcal/mol (1795.3495 without restraints) Performing minimization step: 650. Total energy = 1793.5329 kcal/mol (1793.2900 without restraints) Performing minimization step: 651. Total energy = 1791.4768 kcal/mol (1791.2343 without restraints) Performing minimization step: 652. Total energy = 1789.4242 kcal/mol (1789.1821 without restraints) Performing minimization step: 653. Total energy = 1787.3751 kcal/mol (1787.1334 without restraints) Performing minimization step: 654. Total energy = 1785.3297 kcal/mol (1785.0884 without restraints) Performing minimization step: 655. Total energy = 1783.2878 kcal/mol (1783.0470 without restraints) Performing minimization step: 656. Total energy = 1781.2495 kcal/mol (1781.0092 without restraints) Performing minimization step: 657. Total energy = 1779.2148 kcal/mol (1778.9748 without restraints) Performing minimization step: 658. Total energy = 1777.1836 kcal/mol (1776.9441 without restraints) Performing minimization step: 659. Total energy = 1775.1560 kcal/mol (1774.9168 without restraints) Performing minimization step: 660. Total energy = 1773.1318 kcal/mol (1772.8931 without restraints) Performing minimization step: 661. Total energy = 1771.1112 kcal/mol (1770.8729 without restraints) Performing minimization step: 662. Total energy = 1769.0941 kcal/mol (1768.8562 without restraints) Performing minimization step: 663. Total energy = 1767.0806 kcal/mol (1766.8431 without restraints) Performing minimization step: 664. Total energy = 1765.0704 kcal/mol (1764.8334 without restraints) Performing minimization step: 665. Total energy = 1763.0638 kcal/mol (1762.8272 without restraints) Performing minimization step: 666. Total energy = 1761.0606 kcal/mol (1760.8244 without restraints) Performing minimization step: 667. Total energy = 1759.0609 kcal/mol (1758.8251 without restraints) Performing minimization step: 668. Total energy = 1757.0646 kcal/mol (1756.8292 without restraints) Performing minimization step: 669. Total energy = 1755.0717 kcal/mol (1754.8367 without restraints) Performing minimization step: 670. Total energy = 1753.0823 kcal/mol (1752.8477 without restraints) Performing minimization step: 671. Total energy = 1751.0963 kcal/mol (1750.8620 without restraints) Performing minimization step: 672. Total energy = 1749.1136 kcal/mol (1748.8798 without restraints) Performing minimization step: 673. Total energy = 1747.1343 kcal/mol (1746.9009 without restraints) Performing minimization step: 674. Total energy = 1745.1584 kcal/mol (1744.9254 without restraints) Performing minimization step: 675. Total energy = 1743.1859 kcal/mol (1742.9533 without restraints) Performing minimization step: 676. Total energy = 1741.2167 kcal/mol (1740.9845 without restraints) Performing minimization step: 677. Total energy = 1739.2509 kcal/mol (1739.0191 without restraints) Performing minimization step: 678. Total energy = 1737.2884 kcal/mol (1737.0570 without restraints) Performing minimization step: 679. Total energy = 1735.3292 kcal/mol (1735.0982 without restraints) Performing minimization step: 680. Total energy = 1733.3733 kcal/mol (1733.1426 without restraints) Performing minimization step: 681. Total energy = 1731.4207 kcal/mol (1731.1905 without restraints) Performing minimization step: 682. Total energy = 1729.4714 kcal/mol (1729.2416 without restraints) Performing minimization step: 683. Total energy = 1727.5254 kcal/mol (1727.2959 without restraints) Performing minimization step: 684. Total energy = 1725.5827 kcal/mol (1725.3535 without restraints) Performing minimization step: 685. Total energy = 1723.6432 kcal/mol (1723.4144 without restraints) Performing minimization step: 686. Total energy = 1721.7069 kcal/mol (1721.4786 without restraints) Performing minimization step: 687. Total energy = 1719.7739 kcal/mol (1719.5460 without restraints) Performing minimization step: 688. Total energy = 1717.8442 kcal/mol (1717.6166 without restraints) Performing minimization step: 689. Total energy = 1715.9176 kcal/mol (1715.6903 without restraints) Performing minimization step: 690. Total energy = 1713.9942 kcal/mol (1713.7674 without restraints) Performing minimization step: 691. Total energy = 1712.0740 kcal/mol (1711.8476 without restraints) Performing minimization step: 692. Total energy = 1710.1569 kcal/mol (1709.9308 without restraints) Performing minimization step: 693. Total energy = 1708.2431 kcal/mol (1708.0174 without restraints) Performing minimization step: 694. Total energy = 1706.3326 kcal/mol (1706.1073 without restraints) Performing minimization step: 695. Total energy = 1704.4251 kcal/mol (1704.2002 without restraints) Performing minimization step: 696. Total energy = 1702.5208 kcal/mol (1702.2962 without restraints) Performing minimization step: 697. Total energy = 1700.6196 kcal/mol (1700.3954 without restraints) Performing minimization step: 698. Total energy = 1698.7215 kcal/mol (1698.4977 without restraints) Performing minimization step: 699. Total energy = 1696.8266 kcal/mol (1696.6031 without restraints) Performing minimization step: 700. Total energy = 1694.9347 kcal/mol (1694.7116 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 701. Total energy = 1693.0460 kcal/mol (1692.8232 without restraints) Performing minimization step: 702. Total energy = 1691.1603 kcal/mol (1690.9379 without restraints) Performing minimization step: 703. Total energy = 1689.2772 kcal/mol (1689.0551 without restraints) Performing minimization step: 704. Total energy = 1687.3976 kcal/mol (1687.1759 without restraints) Performing minimization step: 705. Total energy = 1685.5211 kcal/mol (1685.2998 without restraints) Performing minimization step: 706. Total energy = 1683.6478 kcal/mol (1683.4270 without restraints) Performing minimization step: 707. Total energy = 1681.7778 kcal/mol (1681.5572 without restraints) Performing minimization step: 708. Total energy = 1679.9105 kcal/mol (1679.6902 without restraints) Performing minimization step: 709. Total energy = 1678.0461 kcal/mol (1677.8263 without restraints) Performing minimization step: 710. Total energy = 1676.1851 kcal/mol (1675.9655 without restraints) Performing minimization step: 711. Total energy = 1674.3267 kcal/mol (1674.1075 without restraints) Performing minimization step: 712. Total energy = 1672.4714 kcal/mol (1672.2526 without restraints) Performing minimization step: 713. Total energy = 1670.6191 kcal/mol (1670.4006 without restraints) Performing minimization step: 714. Total energy = 1668.7697 kcal/mol (1668.5516 without restraints) Performing minimization step: 715. Total energy = 1666.9233 kcal/mol (1666.7055 without restraints) Performing minimization step: 716. Total energy = 1665.0799 kcal/mol (1664.8625 without restraints) Performing minimization step: 717. Total energy = 1663.2393 kcal/mol (1663.0223 without restraints) Performing minimization step: 718. Total energy = 1661.4018 kcal/mol (1661.1851 without restraints) Performing minimization step: 719. Total energy = 1659.5672 kcal/mol (1659.3508 without restraints) Performing minimization step: 720. Total energy = 1657.7355 kcal/mol (1657.5195 without restraints) Performing minimization step: 721. Total energy = 1655.9067 kcal/mol (1655.6910 without restraints) Performing minimization step: 722. Total energy = 1654.0808 kcal/mol (1653.8655 without restraints) Performing minimization step: 723. Total energy = 1652.2579 kcal/mol (1652.0429 without restraints) Performing minimization step: 724. Total energy = 1650.4378 kcal/mol (1650.2231 without restraints) Performing minimization step: 725. Total energy = 1648.6205 kcal/mol (1648.4062 without restraints) Performing minimization step: 726. Total energy = 1646.8062 kcal/mol (1646.5922 without restraints) Performing minimization step: 727. Total energy = 1644.9947 kcal/mol (1644.7811 without restraints) Performing minimization step: 728. Total energy = 1643.1861 kcal/mol (1642.9728 without restraints) Performing minimization step: 729. Total energy = 1641.3803 kcal/mol (1641.1673 without restraints) Performing minimization step: 730. Total energy = 1639.5773 kcal/mol (1639.3647 without restraints) Performing minimization step: 731. Total energy = 1637.7772 kcal/mol (1637.5649 without restraints) Performing minimization step: 732. Total energy = 1635.9799 kcal/mol (1635.7679 without restraints) Performing minimization step: 733. Total energy = 1634.1854 kcal/mol (1633.9737 without restraints) Performing minimization step: 734. Total energy = 1632.3933 kcal/mol (1632.1820 without restraints) Performing minimization step: 735. Total energy = 1630.6044 kcal/mol (1630.3934 without restraints) Performing minimization step: 736. Total energy = 1628.8183 kcal/mol (1628.6076 without restraints) Performing minimization step: 737. Total energy = 1627.0350 kcal/mol (1626.8246 without restraints) Performing minimization step: 738. Total energy = 1625.2544 kcal/mol (1625.0444 without restraints) Performing minimization step: 739. Total energy = 1623.4766 kcal/mol (1623.2669 without restraints) Performing minimization step: 740. Total energy = 1621.7015 kcal/mol (1621.4922 without restraints) Performing minimization step: 741. Total energy = 1619.9292 kcal/mol (1619.7201 without restraints) Performing minimization step: 742. Total energy = 1618.1596 kcal/mol (1617.9509 without restraints) Performing minimization step: 743. Total energy = 1616.3927 kcal/mol (1616.1843 without restraints) Performing minimization step: 744. Total energy = 1614.6288 kcal/mol (1614.4207 without restraints) Performing minimization step: 745. Total energy = 1612.8674 kcal/mol (1612.6596 without restraints) Performing minimization step: 746. Total energy = 1611.1087 kcal/mol (1610.9012 without restraints) Performing minimization step: 747. Total energy = 1609.3526 kcal/mol (1609.1455 without restraints) Performing minimization step: 748. Total energy = 1607.5993 kcal/mol (1607.3925 without restraints) Performing minimization step: 749. Total energy = 1605.8487 kcal/mol (1605.6422 without restraints) Performing minimization step: 750. Total energy = 1604.1007 kcal/mol (1603.8946 without restraints) Performing minimization step: 751. Total energy = 1602.3554 kcal/mol (1602.1496 without restraints) Performing minimization step: 752. Total energy = 1600.6128 kcal/mol (1600.4073 without restraints) Performing minimization step: 753. Total energy = 1598.8730 kcal/mol (1598.6678 without restraints) Performing minimization step: 754. Total energy = 1597.1357 kcal/mol (1596.9308 without restraints) Performing minimization step: 755. Total energy = 1595.4010 kcal/mol (1595.1964 without restraints) Performing minimization step: 756. Total energy = 1593.6689 kcal/mol (1593.4646 without restraints) Performing minimization step: 757. Total energy = 1591.9395 kcal/mol (1591.7355 without restraints) Performing minimization step: 758. Total energy = 1590.2126 kcal/mol (1590.0090 without restraints) Performing minimization step: 759. Total energy = 1588.4884 kcal/mol (1588.2850 without restraints) Performing minimization step: 760. Total energy = 1586.7667 kcal/mol (1586.5637 without restraints) Performing minimization step: 761. Total energy = 1585.0477 kcal/mol (1584.8449 without restraints) Performing minimization step: 762. Total energy = 1583.3312 kcal/mol (1583.1287 without restraints) Performing minimization step: 763. Total energy = 1581.6173 kcal/mol (1581.4152 without restraints) Performing minimization step: 764. Total energy = 1579.9060 kcal/mol (1579.7042 without restraints) Performing minimization step: 765. Total energy = 1578.1973 kcal/mol (1577.9957 without restraints) Performing minimization step: 766. Total energy = 1576.4911 kcal/mol (1576.2899 without restraints) Performing minimization step: 767. Total energy = 1574.7874 kcal/mol (1574.5865 without restraints) Performing minimization step: 768. Total energy = 1573.0863 kcal/mol (1572.8857 without restraints) Performing minimization step: 769. Total energy = 1571.3878 kcal/mol (1571.1874 without restraints) Performing minimization step: 770. Total energy = 1569.6917 kcal/mol (1569.4917 without restraints) Performing minimization step: 771. Total energy = 1567.9983 kcal/mol (1567.7985 without restraints) Performing minimization step: 772. Total energy = 1566.3073 kcal/mol (1566.1078 without restraints) Performing minimization step: 773. Total energy = 1564.6188 kcal/mol (1564.4197 without restraints) Performing minimization step: 774. Total energy = 1562.9329 kcal/mol (1562.7340 without restraints) Performing minimization step: 775. Total energy = 1561.2494 kcal/mol (1561.0509 without restraints) Performing minimization step: 776. Total energy = 1559.5685 kcal/mol (1559.3702 without restraints) Performing minimization step: 777. Total energy = 1557.8900 kcal/mol (1557.6920 without restraints) Performing minimization step: 778. Total energy = 1556.2139 kcal/mol (1556.0163 without restraints) Performing minimization step: 779. Total energy = 1554.5403 kcal/mol (1554.3429 without restraints) Performing minimization step: 780. Total energy = 1552.8692 kcal/mol (1552.6721 without restraints) Performing minimization step: 781. Total energy = 1551.2006 kcal/mol (1551.0038 without restraints) Performing minimization step: 782. Total energy = 1549.5344 kcal/mol (1549.3379 without restraints) Performing minimization step: 783. Total energy = 1547.8707 kcal/mol (1547.6744 without restraints) Performing minimization step: 784. Total energy = 1546.2093 kcal/mol (1546.0134 without restraints) Performing minimization step: 785. Total energy = 1544.5505 kcal/mol (1544.3548 without restraints) Performing minimization step: 786. Total energy = 1542.8940 kcal/mol (1542.6986 without restraints) Performing minimization step: 787. Total energy = 1541.2400 kcal/mol (1541.0449 without restraints) Performing minimization step: 788. Total energy = 1539.5883 kcal/mol (1539.3935 without restraints) Performing minimization step: 789. Total energy = 1537.9391 kcal/mol (1537.7446 without restraints) Performing minimization step: 790. Total energy = 1536.2923 kcal/mol (1536.0981 without restraints) Performing minimization step: 791. Total energy = 1534.6479 kcal/mol (1534.4539 without restraints) Performing minimization step: 792. Total energy = 1533.0058 kcal/mol (1532.8122 without restraints) Performing minimization step: 793. Total energy = 1531.3662 kcal/mol (1531.1728 without restraints) Performing minimization step: 794. Total energy = 1529.7289 kcal/mol (1529.5358 without restraints) Performing minimization step: 795. Total energy = 1528.0939 kcal/mol (1527.9011 without restraints) Performing minimization step: 796. Total energy = 1526.4613 kcal/mol (1526.2688 without restraints) Performing minimization step: 797. Total energy = 1524.8311 kcal/mol (1524.6388 without restraints) Performing minimization step: 798. Total energy = 1523.2033 kcal/mol (1523.0113 without restraints) Performing minimization step: 799. Total energy = 1521.5777 kcal/mol (1521.3860 without restraints) Performing minimization step: 800. Total energy = 1519.9546 kcal/mol (1519.7631 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 801. Total energy = 1518.3337 kcal/mol (1518.1425 without restraints) Performing minimization step: 802. Total energy = 1516.7152 kcal/mol (1516.5243 without restraints) Performing minimization step: 803. Total energy = 1515.0990 kcal/mol (1514.9084 without restraints) Performing minimization step: 804. Total energy = 1513.4851 kcal/mol (1513.2947 without restraints) Performing minimization step: 805. Total energy = 1511.8735 kcal/mol (1511.6834 without restraints) Performing minimization step: 806. Total energy = 1510.2642 kcal/mol (1510.0744 without restraints) Performing minimization step: 807. Total energy = 1508.6573 kcal/mol (1508.4677 without restraints) Performing minimization step: 808. Total energy = 1507.0526 kcal/mol (1506.8633 without restraints) Performing minimization step: 809. Total energy = 1505.4501 kcal/mol (1505.2611 without restraints) Performing minimization step: 810. Total energy = 1503.8500 kcal/mol (1503.6613 without restraints) Performing minimization step: 811. Total energy = 1502.2522 kcal/mol (1502.0637 without restraints) Performing minimization step: 812. Total energy = 1500.6566 kcal/mol (1500.4684 without restraints) Performing minimization step: 813. Total energy = 1499.0634 kcal/mol (1498.8756 without restraints) Performing minimization step: 814. Total energy = 1497.4724 kcal/mol (1497.2848 without restraints) Performing minimization step: 815. Total energy = 1495.8836 kcal/mol (1495.6962 without restraints) Performing minimization step: 816. Total energy = 1494.2970 kcal/mol (1494.1099 without restraints) Performing minimization step: 817. Total energy = 1492.7127 kcal/mol (1492.5259 without restraints) Performing minimization step: 818. Total energy = 1491.1306 kcal/mol (1490.9440 without restraints) Performing minimization step: 819. Total energy = 1489.5508 kcal/mol (1489.3645 without restraints) Performing minimization step: 820. Total energy = 1487.9732 kcal/mol (1487.7871 without restraints) Performing minimization step: 821. Total energy = 1486.3975 kcal/mol (1486.2117 without restraints) Performing minimization step: 822. Total energy = 1484.8243 kcal/mol (1484.6387 without restraints) Performing minimization step: 823. Total energy = 1483.2533 kcal/mol (1483.0680 without restraints) Performing minimization step: 824. Total energy = 1481.6845 kcal/mol (1481.4995 without restraints) Performing minimization step: 825. Total energy = 1480.1180 kcal/mol (1479.9332 without restraints) Performing minimization step: 826. Total energy = 1478.5536 kcal/mol (1478.3691 without restraints) Performing minimization step: 827. Total energy = 1476.9914 kcal/mol (1476.8071 without restraints) Performing minimization step: 828. Total energy = 1475.4316 kcal/mol (1475.2476 without restraints) Performing minimization step: 829. Total energy = 1473.8737 kcal/mol (1473.6900 without restraints) Performing minimization step: 830. Total energy = 1472.3181 kcal/mol (1472.1346 without restraints) Performing minimization step: 831. Total energy = 1470.7646 kcal/mol (1470.5813 without restraints) Performing minimization step: 832. Total energy = 1469.2132 kcal/mol (1469.0302 without restraints) Performing minimization step: 833. Total energy = 1467.6641 kcal/mol (1467.4813 without restraints) Performing minimization step: 834. Total energy = 1466.1170 kcal/mol (1465.9346 without restraints) Performing minimization step: 835. Total energy = 1464.5722 kcal/mol (1464.3900 without restraints) Performing minimization step: 836. Total energy = 1463.0294 kcal/mol (1462.8474 without restraints) Performing minimization step: 837. Total energy = 1461.4888 kcal/mol (1461.3071 without restraints) Performing minimization step: 838. Total energy = 1459.9504 kcal/mol (1459.7689 without restraints) Performing minimization step: 839. Total energy = 1458.4141 kcal/mol (1458.2328 without restraints) Performing minimization step: 840. Total energy = 1456.8799 kcal/mol (1456.6989 without restraints) Performing minimization step: 841. Total energy = 1455.3478 kcal/mol (1455.1671 without restraints) Performing minimization step: 842. Total energy = 1453.8178 kcal/mol (1453.6374 without restraints) Performing minimization step: 843. Total energy = 1452.2899 kcal/mol (1452.1097 without restraints) Performing minimization step: 844. Total energy = 1450.7642 kcal/mol (1450.5842 without restraints) Performing minimization step: 845. Total energy = 1449.2405 kcal/mol (1449.0608 without restraints) Performing minimization step: 846. Total energy = 1447.7190 kcal/mol (1447.5395 without restraints) Performing minimization step: 847. Total energy = 1446.1995 kcal/mol (1446.0203 without restraints) Performing minimization step: 848. Total energy = 1444.6821 kcal/mol (1444.5032 without restraints) Performing minimization step: 849. Total energy = 1443.1668 kcal/mol (1442.9881 without restraints) Performing minimization step: 850. Total energy = 1441.6536 kcal/mol (1441.4751 without restraints) Performing minimization step: 851. Total energy = 1440.1425 kcal/mol (1439.9642 without restraints) Performing minimization step: 852. Total energy = 1438.6336 kcal/mol (1438.4556 without restraints) Performing minimization step: 853. Total energy = 1437.1266 kcal/mol (1436.9489 without restraints) Performing minimization step: 854. Total energy = 1435.6217 kcal/mol (1435.4441 without restraints) Performing minimization step: 855. Total energy = 1434.1188 kcal/mol (1433.9415 without restraints) Performing minimization step: 856. Total energy = 1432.6179 kcal/mol (1432.4409 without restraints) Performing minimization step: 857. Total energy = 1431.1189 kcal/mol (1430.9421 without restraints) Performing minimization step: 858. Total energy = 1429.6224 kcal/mol (1429.4458 without restraints) Performing minimization step: 859. Total energy = 1428.1277 kcal/mol (1427.9513 without restraints) Performing minimization step: 860. Total energy = 1426.6350 kcal/mol (1426.4589 without restraints) Performing minimization step: 861. Total energy = 1425.1448 kcal/mol (1424.9689 without restraints) Performing minimization step: 862. Total energy = 1423.6561 kcal/mol (1423.4805 without restraints) Performing minimization step: 863. Total energy = 1422.1695 kcal/mol (1421.9942 without restraints) Performing minimization step: 864. Total energy = 1420.6849 kcal/mol (1420.5098 without restraints) Performing minimization step: 865. Total energy = 1419.2023 kcal/mol (1419.0275 without restraints) Performing minimization step: 866. Total energy = 1417.7218 kcal/mol (1417.5471 without restraints) Performing minimization step: 867. Total energy = 1416.2432 kcal/mol (1416.0688 without restraints) Performing minimization step: 868. Total energy = 1414.7666 kcal/mol (1414.5925 without restraints) Performing minimization step: 869. Total energy = 1413.2921 kcal/mol (1413.1181 without restraints) Performing minimization step: 870. Total energy = 1411.8195 kcal/mol (1411.6458 without restraints) Performing minimization step: 871. Total energy = 1410.3489 kcal/mol (1410.1754 without restraints) Performing minimization step: 872. Total energy = 1408.8804 kcal/mol (1408.7072 without restraints) Performing minimization step: 873. Total energy = 1407.4138 kcal/mol (1407.2408 without restraints) Performing minimization step: 874. Total energy = 1405.9492 kcal/mol (1405.7764 without restraints) Performing minimization step: 875. Total energy = 1404.4865 kcal/mol (1404.3140 without restraints) Performing minimization step: 876. Total energy = 1403.0258 kcal/mol (1402.8535 without restraints) Performing minimization step: 877. Total energy = 1401.5670 kcal/mol (1401.3949 without restraints) Performing minimization step: 878. Total energy = 1400.1102 kcal/mol (1399.9383 without restraints) Performing minimization step: 879. Total energy = 1398.6553 kcal/mol (1398.4837 without restraints) Performing minimization step: 880. Total energy = 1397.2024 kcal/mol (1397.0310 without restraints) Performing minimization step: 881. Total energy = 1395.7515 kcal/mol (1395.5804 without restraints) Performing minimization step: 882. Total energy = 1394.3027 kcal/mol (1394.1318 without restraints) Performing minimization step: 883. Total energy = 1392.8556 kcal/mol (1392.6849 without restraints) Performing minimization step: 884. Total energy = 1391.4105 kcal/mol (1391.2400 without restraints) Performing minimization step: 885. Total energy = 1389.9673 kcal/mol (1389.7971 without restraints) Performing minimization step: 886. Total energy = 1388.5261 kcal/mol (1388.3561 without restraints) Performing minimization step: 887. Total energy = 1387.0867 kcal/mol (1386.9170 without restraints) Performing minimization step: 888. Total energy = 1385.6493 kcal/mol (1385.4797 without restraints) Performing minimization step: 889. Total energy = 1384.2138 kcal/mol (1384.0444 without restraints) Performing minimization step: 890. Total energy = 1382.7801 kcal/mol (1382.6110 without restraints) Performing minimization step: 891. Total energy = 1381.3484 kcal/mol (1381.1796 without restraints) Performing minimization step: 892. Total energy = 1379.9187 kcal/mol (1379.7500 without restraints) Performing minimization step: 893. Total energy = 1378.4908 kcal/mol (1378.3224 without restraints) Performing minimization step: 894. Total energy = 1377.0648 kcal/mol (1376.8966 without restraints) Performing minimization step: 895. Total energy = 1375.6408 kcal/mol (1375.4728 without restraints) Performing minimization step: 896. Total energy = 1374.2186 kcal/mol (1374.0508 without restraints) Performing minimization step: 897. Total energy = 1372.7982 kcal/mol (1372.6307 without restraints) Performing minimization step: 898. Total energy = 1371.3798 kcal/mol (1371.2125 without restraints) Performing minimization step: 899. Total energy = 1369.9633 kcal/mol (1369.7962 without restraints) Performing minimization step: 900. Total energy = 1368.5486 kcal/mol (1368.3818 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 901. Total energy = 1367.1358 kcal/mol (1366.9692 without restraints) Performing minimization step: 902. Total energy = 1365.7249 kcal/mol (1365.5585 without restraints) Performing minimization step: 903. Total energy = 1364.3159 kcal/mol (1364.1496 without restraints) Performing minimization step: 904. Total energy = 1362.9087 kcal/mol (1362.7427 without restraints) Performing minimization step: 905. Total energy = 1361.5035 kcal/mol (1361.3377 without restraints) Performing minimization step: 906. Total energy = 1360.1000 kcal/mol (1359.9345 without restraints) Performing minimization step: 907. Total energy = 1358.6984 kcal/mol (1358.5331 without restraints) Performing minimization step: 908. Total energy = 1357.2986 kcal/mol (1357.1335 without restraints) Performing minimization step: 909. Total energy = 1355.9007 kcal/mol (1355.7358 without restraints) Performing minimization step: 910. Total energy = 1354.5046 kcal/mol (1354.3399 without restraints) Performing minimization step: 911. Total energy = 1353.1104 kcal/mol (1352.9459 without restraints) Performing minimization step: 912. Total energy = 1351.7182 kcal/mol (1351.5539 without restraints) Performing minimization step: 913. Total energy = 1350.3276 kcal/mol (1350.1636 without restraints) Performing minimization step: 914. Total energy = 1348.9388 kcal/mol (1348.7750 without restraints) Performing minimization step: 915. Total energy = 1347.5519 kcal/mol (1347.3883 without restraints) Performing minimization step: 916. Total energy = 1346.1670 kcal/mol (1346.0036 without restraints) Performing minimization step: 917. Total energy = 1344.7837 kcal/mol (1344.6206 without restraints) Performing minimization step: 918. Total energy = 1343.4023 kcal/mol (1343.2393 without restraints) Performing minimization step: 919. Total energy = 1342.0226 kcal/mol (1341.8599 without restraints) Performing minimization step: 920. Total energy = 1340.6448 kcal/mol (1340.4822 without restraints) Performing minimization step: 921. Total energy = 1339.2687 kcal/mol (1339.1064 without restraints) Performing minimization step: 922. Total energy = 1337.8944 kcal/mol (1337.7323 without restraints) Performing minimization step: 923. Total energy = 1336.5222 kcal/mol (1336.3603 without restraints) Performing minimization step: 924. Total energy = 1335.1515 kcal/mol (1334.9899 without restraints) Performing minimization step: 925. Total energy = 1333.7827 kcal/mol (1333.6212 without restraints) Performing minimization step: 926. Total energy = 1332.4156 kcal/mol (1332.2544 without restraints) Performing minimization step: 927. Total energy = 1331.0504 kcal/mol (1330.8893 without restraints) Performing minimization step: 928. Total energy = 1329.6869 kcal/mol (1329.5260 without restraints) Performing minimization step: 929. Total energy = 1328.3252 kcal/mol (1328.1646 without restraints) Performing minimization step: 930. Total energy = 1326.9653 kcal/mol (1326.8048 without restraints) Performing minimization step: 931. Total energy = 1325.6071 kcal/mol (1325.4469 without restraints) Performing minimization step: 932. Total energy = 1324.2507 kcal/mol (1324.0907 without restraints) Performing minimization step: 933. Total energy = 1322.8961 kcal/mol (1322.7363 without restraints) Performing minimization step: 934. Total energy = 1321.5428 kcal/mol (1321.3833 without restraints) Performing minimization step: 935. Total energy = 1320.1918 kcal/mol (1320.0324 without restraints) Performing minimization step: 936. Total energy = 1318.8423 kcal/mol (1318.6831 without restraints) Performing minimization step: 937. Total energy = 1317.4947 kcal/mol (1317.3357 without restraints) Performing minimization step: 938. Total energy = 1316.1489 kcal/mol (1315.9901 without restraints) Performing minimization step: 939. Total energy = 1314.8048 kcal/mol (1314.6463 without restraints) Performing minimization step: 940. Total energy = 1313.4625 kcal/mol (1313.3042 without restraints) Performing minimization step: 941. Total energy = 1312.1220 kcal/mol (1311.9638 without restraints) Performing minimization step: 942. Total energy = 1310.7831 kcal/mol (1310.6252 without restraints) Performing minimization step: 943. Total energy = 1309.4460 kcal/mol (1309.2883 without restraints) Performing minimization step: 944. Total energy = 1308.1107 kcal/mol (1307.9532 without restraints) Performing minimization step: 945. Total energy = 1306.7771 kcal/mol (1306.6198 without restraints) Performing minimization step: 946. Total energy = 1305.4452 kcal/mol (1305.2881 without restraints) Performing minimization step: 947. Total energy = 1304.1151 kcal/mol (1303.9582 without restraints) Performing minimization step: 948. Total energy = 1302.7866 kcal/mol (1302.6299 without restraints) Performing minimization step: 949. Total energy = 1301.4599 kcal/mol (1301.3034 without restraints) Performing minimization step: 950. Total energy = 1300.1349 kcal/mol (1299.9787 without restraints) Performing minimization step: 951. Total energy = 1298.8117 kcal/mol (1298.6556 without restraints) Performing minimization step: 952. Total energy = 1297.4902 kcal/mol (1297.3343 without restraints) Performing minimization step: 953. Total energy = 1296.1703 kcal/mol (1296.0146 without restraints) Performing minimization step: 954. Total energy = 1294.8520 kcal/mol (1294.6965 without restraints) Performing minimization step: 955. Total energy = 1293.5356 kcal/mol (1293.3803 without restraints) Performing minimization step: 956. Total energy = 1292.2208 kcal/mol (1292.0658 without restraints) Performing minimization step: 957. Total energy = 1290.9080 kcal/mol (1290.7531 without restraints) Performing minimization step: 958. Total energy = 1289.5967 kcal/mol (1289.4420 without restraints) Performing minimization step: 959. Total energy = 1288.2871 kcal/mol (1288.1326 without restraints) Performing minimization step: 960. Total energy = 1286.9791 kcal/mol (1286.8248 without restraints) Performing minimization step: 961. Total energy = 1285.6729 kcal/mol (1285.5188 without restraints) Performing minimization step: 962. Total energy = 1284.3683 kcal/mol (1284.2144 without restraints) Performing minimization step: 963. Total energy = 1283.0654 kcal/mol (1282.9117 without restraints) Performing minimization step: 964. Total energy = 1281.7642 kcal/mol (1281.6107 without restraints) Performing minimization step: 965. Total energy = 1280.4647 kcal/mol (1280.3114 without restraints) Performing minimization step: 966. Total energy = 1279.1669 kcal/mol (1279.0138 without restraints) Performing minimization step: 967. Total energy = 1277.8707 kcal/mol (1277.7178 without restraints) Performing minimization step: 968. Total energy = 1276.5762 kcal/mol (1276.4235 without restraints) Performing minimization step: 969. Total energy = 1275.2833 kcal/mol (1275.1308 without restraints) Performing minimization step: 970. Total energy = 1273.9921 kcal/mol (1273.8398 without restraints) Performing minimization step: 971. Total energy = 1272.7026 kcal/mol (1272.5505 without restraints) Performing minimization step: 972. Total energy = 1271.4148 kcal/mol (1271.2629 without restraints) Performing minimization step: 973. Total energy = 1270.1286 kcal/mol (1269.9769 without restraints) Performing minimization step: 974. Total energy = 1268.8441 kcal/mol (1268.6926 without restraints) Performing minimization step: 975. Total energy = 1267.5612 kcal/mol (1267.4099 without restraints) Performing minimization step: 976. Total energy = 1266.2799 kcal/mol (1266.1288 without restraints) Performing minimization step: 977. Total energy = 1265.0003 kcal/mol (1264.8494 without restraints) Performing minimization step: 978. Total energy = 1263.7221 kcal/mol (1263.5713 without restraints) Performing minimization step: 979. Total energy = 1262.4458 kcal/mol (1262.2952 without restraints) Performing minimization step: 980. Total energy = 1261.1711 kcal/mol (1261.0208 without restraints) Performing minimization step: 981. Total energy = 1259.8981 kcal/mol (1259.7480 without restraints) Performing minimization step: 982. Total energy = 1258.6267 kcal/mol (1258.4768 without restraints) Performing minimization step: 983. Total energy = 1257.3570 kcal/mol (1257.2072 without restraints) Performing minimization step: 984. Total energy = 1256.0889 kcal/mol (1255.9393 without restraints) Performing minimization step: 985. Total energy = 1254.8224 kcal/mol (1254.6730 without restraints) Performing minimization step: 986. Total energy = 1253.5573 kcal/mol (1253.4081 without restraints) Performing minimization step: 987. Total energy = 1252.2941 kcal/mol (1252.1451 without restraints) Performing minimization step: 988. Total energy = 1251.0322 kcal/mol (1250.8834 without restraints) Performing minimization step: 989. Total energy = 1249.7722 kcal/mol (1249.6236 without restraints) Performing minimization step: 990. Total energy = 1248.5138 kcal/mol (1248.3654 without restraints) Performing minimization step: 991. Total energy = 1247.2571 kcal/mol (1247.1088 without restraints) Performing minimization step: 992. Total energy = 1246.0020 kcal/mol (1245.8541 without restraints) Performing minimization step: 993. Total energy = 1244.7486 kcal/mol (1244.6007 without restraints) Performing minimization step: 994. Total energy = 1243.4966 kcal/mol (1243.3489 without restraints) Performing minimization step: 995. Total energy = 1242.2463 kcal/mol (1242.0988 without restraints) Performing minimization step: 996. Total energy = 1240.9975 kcal/mol (1240.8502 without restraints) Performing minimization step: 997. Total energy = 1239.7504 kcal/mol (1239.6033 without restraints) Performing minimization step: 998. Total energy = 1238.5049 kcal/mol (1238.3579 without restraints) Performing minimization step: 999. Total energy = 1237.2609 kcal/mol (1237.1141 without restraints) Performing minimization step: 1000. Total energy = 1236.0185 kcal/mol (1235.8720 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 1234.7780 kcal/mol (1234.6316 without restraints) Performing minimization step: 1002. Total energy = 1233.5388 kcal/mol (1233.3926 without restraints) Performing minimization step: 1003. Total energy = 1232.3014 kcal/mol (1232.1554 without restraints) Performing minimization step: 1004. Total energy = 1231.0654 kcal/mol (1230.9196 without restraints) Performing minimization step: 1005. Total energy = 1229.8310 kcal/mol (1229.6854 without restraints) Performing minimization step: 1006. Total energy = 1228.5981 kcal/mol (1228.4527 without restraints) Performing minimization step: 1007. Total energy = 1227.3669 kcal/mol (1227.2216 without restraints) Performing minimization step: 1008. Total energy = 1226.1372 kcal/mol (1225.9921 without restraints) Performing minimization step: 1009. Total energy = 1224.9090 kcal/mol (1224.7642 without restraints) Performing minimization step: 1010. Total energy = 1223.6825 kcal/mol (1223.5378 without restraints) Performing minimization step: 1011. Total energy = 1222.4575 kcal/mol (1222.3130 without restraints) Performing minimization step: 1012. Total energy = 1221.2341 kcal/mol (1221.0897 without restraints) Performing minimization step: 1013. Total energy = 1220.0122 kcal/mol (1219.8681 without restraints) Performing minimization step: 1014. Total energy = 1218.7918 kcal/mol (1218.6478 without restraints) Performing minimization step: 1015. Total energy = 1217.5730 kcal/mol (1217.4293 without restraints) Performing minimization step: 1016. Total energy = 1216.3556 kcal/mol (1216.2120 without restraints) Performing minimization step: 1017. Total energy = 1215.1400 kcal/mol (1214.9966 without restraints) Performing minimization step: 1018. Total energy = 1213.9259 kcal/mol (1213.7827 without restraints) Performing minimization step: 1019. Total energy = 1212.7134 kcal/mol (1212.5703 without restraints) Performing minimization step: 1020. Total energy = 1211.5024 kcal/mol (1211.3595 without restraints) Performing minimization step: 1021. Total energy = 1210.2930 kcal/mol (1210.1503 without restraints) Performing minimization step: 1022. Total energy = 1209.0851 kcal/mol (1208.9426 without restraints) Performing minimization step: 1023. Total energy = 1207.8787 kcal/mol (1207.7364 without restraints) Performing minimization step: 1024. Total energy = 1206.6739 kcal/mol (1206.5318 without restraints) Performing minimization step: 1025. Total energy = 1205.4709 kcal/mol (1205.3289 without restraints) Performing minimization step: 1026. Total energy = 1204.2691 kcal/mol (1204.1274 without restraints) Performing minimization step: 1027. Total energy = 1203.0689 kcal/mol (1202.9274 without restraints) Performing minimization step: 1028. Total energy = 1201.8703 kcal/mol (1201.7289 without restraints) Performing minimization step: 1029. Total energy = 1200.6731 kcal/mol (1200.5319 without restraints) Performing minimization step: 1030. Total energy = 1199.4775 kcal/mol (1199.3365 without restraints) Performing minimization step: 1031. Total energy = 1198.2834 kcal/mol (1198.1425 without restraints) Performing minimization step: 1032. Total energy = 1197.0908 kcal/mol (1196.9501 without restraints) Performing minimization step: 1033. Total energy = 1195.8998 kcal/mol (1195.7593 without restraints) Performing minimization step: 1034. Total energy = 1194.7100 kcal/mol (1194.5697 without restraints) Performing minimization step: 1035. Total energy = 1193.5220 kcal/mol (1193.3818 without restraints) Performing minimization step: 1036. Total energy = 1192.3355 kcal/mol (1192.1955 without restraints) Performing minimization step: 1037. Total energy = 1191.1505 kcal/mol (1191.0107 without restraints) Performing minimization step: 1038. Total energy = 1189.9670 kcal/mol (1189.8274 without restraints) Performing minimization step: 1039. Total energy = 1188.7850 kcal/mol (1188.6456 without restraints) Performing minimization step: 1040. Total energy = 1187.6046 kcal/mol (1187.4653 without restraints) Performing minimization step: 1041. Total energy = 1186.4256 kcal/mol (1186.2865 without restraints) Performing minimization step: 1042. Total energy = 1185.2481 kcal/mol (1185.1092 without restraints) Performing minimization step: 1043. Total energy = 1184.0722 kcal/mol (1183.9335 without restraints) Performing minimization step: 1044. Total energy = 1182.8977 kcal/mol (1182.7592 without restraints) Performing minimization step: 1045. Total energy = 1181.7247 kcal/mol (1181.5864 without restraints) Performing minimization step: 1046. Total energy = 1180.5533 kcal/mol (1180.4151 without restraints) Performing minimization step: 1047. Total energy = 1179.3832 kcal/mol (1179.2452 without restraints) Performing minimization step: 1048. Total energy = 1178.2147 kcal/mol (1178.0769 without restraints) Performing minimization step: 1049. Total energy = 1177.0477 kcal/mol (1176.9101 without restraints) Performing minimization step: 1050. Total energy = 1175.8822 kcal/mol (1175.7447 without restraints) Performing minimization step: 1051. Total energy = 1174.7182 kcal/mol (1174.5809 without restraints) Performing minimization step: 1052. Total energy = 1173.5556 kcal/mol (1173.4185 without restraints) Performing minimization step: 1053. Total energy = 1172.3946 kcal/mol (1172.2576 without restraints) Performing minimization step: 1054. Total energy = 1171.2350 kcal/mol (1171.0982 without restraints) Performing minimization step: 1055. Total energy = 1170.0769 kcal/mol (1169.9402 without restraints) Performing minimization step: 1056. Total energy = 1168.9204 kcal/mol (1168.7840 without restraints) Performing minimization step: 1057. Total energy = 1167.7652 kcal/mol (1167.6290 without restraints) Performing minimization step: 1058. Total energy = 1166.6115 kcal/mol (1166.4755 without restraints) Performing minimization step: 1059. Total energy = 1165.4593 kcal/mol (1165.3234 without restraints) Performing minimization step: 1060. Total energy = 1164.3086 kcal/mol (1164.1728 without restraints) Performing minimization step: 1061. Total energy = 1163.1593 kcal/mol (1163.0237 without restraints) Performing minimization step: 1062. Total energy = 1162.0114 kcal/mol (1161.8760 without restraints) Performing minimization step: 1063. Total energy = 1160.8650 kcal/mol (1160.7298 without restraints) Performing minimization step: 1064. Total energy = 1159.7201 kcal/mol (1159.5851 without restraints) Performing minimization step: 1065. Total energy = 1158.5767 kcal/mol (1158.4418 without restraints) Performing minimization step: 1066. Total energy = 1157.4347 kcal/mol (1157.3000 without restraints) Performing minimization step: 1067. Total energy = 1156.2941 kcal/mol (1156.1596 without restraints) Performing minimization step: 1068. Total energy = 1155.1550 kcal/mol (1155.0207 without restraints) Performing minimization step: 1069. Total energy = 1154.0174 kcal/mol (1153.8832 without restraints) Performing minimization step: 1070. Total energy = 1152.8812 kcal/mol (1152.7472 without restraints) Performing minimization step: 1071. Total energy = 1151.7464 kcal/mol (1151.6126 without restraints) Performing minimization step: 1072. Total energy = 1150.6131 kcal/mol (1150.4794 without restraints) Performing minimization step: 1073. Total energy = 1149.4813 kcal/mol (1149.3477 without restraints) Performing minimization step: 1074. Total energy = 1148.3508 kcal/mol (1148.2175 without restraints) Performing minimization step: 1075. Total energy = 1147.2211 kcal/mol (1147.0879 without restraints) Performing minimization step: 1076. Total energy = 1146.0936 kcal/mol (1145.9606 without restraints) Performing minimization step: 1077. Total energy = 1144.9674 kcal/mol (1144.8346 without restraints) Performing minimization step: 1078. Total energy = 1143.8427 kcal/mol (1143.7101 without restraints) Performing minimization step: 1079. Total energy = 1142.7195 kcal/mol (1142.5870 without restraints) Performing minimization step: 1080. Total energy = 1141.5977 kcal/mol (1141.4653 without restraints) Performing minimization step: 1081. Total energy = 1140.4773 kcal/mol (1140.3451 without restraints) Performing minimization step: 1082. Total energy = 1139.3583 kcal/mol (1139.2263 without restraints) Performing minimization step: 1083. Total energy = 1138.2408 kcal/mol (1138.1089 without restraints) Performing minimization step: 1084. Total energy = 1137.1242 kcal/mol (1136.9926 without restraints) Performing minimization step: 1085. Total energy = 1136.0095 kcal/mol (1135.8780 without restraints) Performing minimization step: 1086. Total energy = 1134.8962 kcal/mol (1134.7649 without restraints) Performing minimization step: 1087. Total energy = 1133.7844 kcal/mol (1133.6532 without restraints) Performing minimization step: 1088. Total energy = 1132.6739 kcal/mol (1132.5429 without restraints) Performing minimization step: 1089. Total energy = 1131.5649 kcal/mol (1131.4341 without restraints) Performing minimization step: 1090. Total energy = 1130.4573 kcal/mol (1130.3266 without restraints) Performing minimization step: 1091. Total energy = 1129.3508 kcal/mol (1129.2203 without restraints) Performing minimization step: 1092. Total energy = 1128.2460 kcal/mol (1128.1157 without restraints) Performing minimization step: 1093. Total energy = 1127.1426 kcal/mol (1127.0125 without restraints) Performing minimization step: 1094. Total energy = 1126.0407 kcal/mol (1125.9107 without restraints) Performing minimization step: 1095. Total energy = 1124.9401 kcal/mol (1124.8103 without restraints) Performing minimization step: 1096. Total energy = 1123.8409 kcal/mol (1123.7112 without restraints) Performing minimization step: 1097. Total energy = 1122.7431 kcal/mol (1122.6136 without restraints) Performing minimization step: 1098. Total energy = 1121.6467 kcal/mol (1121.5174 without restraints) Performing minimization step: 1099. Total energy = 1120.5517 kcal/mol (1120.4226 without restraints) Performing minimization step: 1100. Total energy = 1119.4582 kcal/mol (1119.3292 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 1118.3660 kcal/mol (1118.2371 without restraints) Performing minimization step: 1102. Total energy = 1117.2751 kcal/mol (1117.1464 without restraints) Performing minimization step: 1103. Total energy = 1116.1857 kcal/mol (1116.0572 without restraints) Performing minimization step: 1104. Total energy = 1115.0976 kcal/mol (1114.9693 without restraints) Performing minimization step: 1105. Total energy = 1114.0110 kcal/mol (1113.8828 without restraints) Performing minimization step: 1106. Total energy = 1112.9257 kcal/mol (1112.7977 without restraints) Performing minimization step: 1107. Total energy = 1111.8418 kcal/mol (1111.7140 without restraints) Performing minimization step: 1108. Total energy = 1110.7594 kcal/mol (1110.6317 without restraints) Performing minimization step: 1109. Total energy = 1109.6782 kcal/mol (1109.5507 without restraints) Performing minimization step: 1110. Total energy = 1108.5985 kcal/mol (1108.4711 without restraints) Performing minimization step: 1111. Total energy = 1107.5202 kcal/mol (1107.3929 without restraints) Performing minimization step: 1112. Total energy = 1106.4432 kcal/mol (1106.3161 without restraints) Performing minimization step: 1113. Total energy = 1105.3676 kcal/mol (1105.2407 without restraints) Performing minimization step: 1114. Total energy = 1104.2933 kcal/mol (1104.1666 without restraints) Performing minimization step: 1115. Total energy = 1103.2205 kcal/mol (1103.0939 without restraints) Performing minimization step: 1116. Total energy = 1102.1490 kcal/mol (1102.0226 without restraints) Performing minimization step: 1117. Total energy = 1101.0788 kcal/mol (1100.9526 without restraints) Performing minimization step: 1118. Total energy = 1100.0101 kcal/mol (1099.8840 without restraints) Performing minimization step: 1119. Total energy = 1098.9427 kcal/mol (1098.8168 without restraints) Performing minimization step: 1120. Total energy = 1097.8766 kcal/mol (1097.7509 without restraints) Performing minimization step: 1121. Total energy = 1096.8119 kcal/mol (1096.6864 without restraints) Performing minimization step: 1122. Total energy = 1095.7486 kcal/mol (1095.6232 without restraints) Performing minimization step: 1123. Total energy = 1094.6867 kcal/mol (1094.5614 without restraints) Performing minimization step: 1124. Total energy = 1093.6260 kcal/mol (1093.5009 without restraints) Performing minimization step: 1125. Total energy = 1092.5668 kcal/mol (1092.4418 without restraints) Performing minimization step: 1126. Total energy = 1091.5089 kcal/mol (1091.3841 without restraints) Performing minimization step: 1127. Total energy = 1090.4523 kcal/mol (1090.3277 without restraints) Performing minimization step: 1128. Total energy = 1089.3971 kcal/mol (1089.2726 without restraints) Performing minimization step: 1129. Total energy = 1088.3432 kcal/mol (1088.2189 without restraints) Performing minimization step: 1130. Total energy = 1087.2906 kcal/mol (1087.1664 without restraints) Performing minimization step: 1131. Total energy = 1086.2394 kcal/mol (1086.1154 without restraints) Performing minimization step: 1132. Total energy = 1085.1897 kcal/mol (1085.0659 without restraints) Performing minimization step: 1133. Total energy = 1084.1413 kcal/mol (1084.0176 without restraints) Performing minimization step: 1134. Total energy = 1083.0941 kcal/mol (1082.9706 without restraints) Performing minimization step: 1135. Total energy = 1082.0484 kcal/mol (1081.9250 without restraints) Performing minimization step: 1136. Total energy = 1081.0039 kcal/mol (1080.8807 without restraints) Performing minimization step: 1137. Total energy = 1079.9608 kcal/mol (1079.8377 without restraints) Performing minimization step: 1138. Total energy = 1078.9190 kcal/mol (1078.7961 without restraints) Performing minimization step: 1139. Total energy = 1077.8785 kcal/mol (1077.7558 without restraints) Performing minimization step: 1140. Total energy = 1076.8394 kcal/mol (1076.7168 without restraints) Performing minimization step: 1141. Total energy = 1075.8016 kcal/mol (1075.6792 without restraints) Performing minimization step: 1142. Total energy = 1074.7651 kcal/mol (1074.6428 without restraints) Performing minimization step: 1143. Total energy = 1073.7299 kcal/mol (1073.6078 without restraints) Performing minimization step: 1144. Total energy = 1072.6961 kcal/mol (1072.5741 without restraints) Performing minimization step: 1145. Total energy = 1071.6636 kcal/mol (1071.5418 without restraints) Performing minimization step: 1146. Total energy = 1070.6324 kcal/mol (1070.5108 without restraints) Performing minimization step: 1147. Total energy = 1069.6026 kcal/mol (1069.4811 without restraints) Performing minimization step: 1148. Total energy = 1068.5740 kcal/mol (1068.4527 without restraints) Performing minimization step: 1149. Total energy = 1067.5468 kcal/mol (1067.4256 without restraints) Performing minimization step: 1150. Total energy = 1066.5209 kcal/mol (1066.3999 without restraints) Performing minimization step: 1151. Total energy = 1065.4963 kcal/mol (1065.3754 without restraints) Performing minimization step: 1152. Total energy = 1064.4730 kcal/mol (1064.3523 without restraints) Performing minimization step: 1153. Total energy = 1063.4511 kcal/mol (1063.3305 without restraints) Performing minimization step: 1154. Total energy = 1062.4302 kcal/mol (1062.3098 without restraints) Performing minimization step: 1155. Total energy = 1061.4108 kcal/mol (1061.2906 without restraints) Performing minimization step: 1156. Total energy = 1060.3930 kcal/mol (1060.2729 without restraints) Performing minimization step: 1157. Total energy = 1059.3763 kcal/mol (1059.2563 without restraints) Performing minimization step: 1158. Total energy = 1058.3608 kcal/mol (1058.2410 without restraints) Performing minimization step: 1159. Total energy = 1057.3467 kcal/mol (1057.2271 without restraints) Performing minimization step: 1160. Total energy = 1056.3339 kcal/mol (1056.2144 without restraints) Performing minimization step: 1161. Total energy = 1055.3224 kcal/mol (1055.2030 without restraints) Performing minimization step: 1162. Total energy = 1054.3121 kcal/mol (1054.1930 without restraints) Performing minimization step: 1163. Total energy = 1053.3032 kcal/mol (1053.1842 without restraints) Performing minimization step: 1164. Total energy = 1052.2956 kcal/mol (1052.1767 without restraints) Performing minimization step: 1165. Total energy = 1051.2892 kcal/mol (1051.1705 without restraints) Performing minimization step: 1166. Total energy = 1050.2841 kcal/mol (1050.1656 without restraints) Performing minimization step: 1167. Total energy = 1049.2804 kcal/mol (1049.1620 without restraints) Performing minimization step: 1168. Total energy = 1048.2779 kcal/mol (1048.1597 without restraints) Performing minimization step: 1169. Total energy = 1047.2768 kcal/mol (1047.1587 without restraints) Performing minimization step: 1170. Total energy = 1046.2767 kcal/mol (1046.1587 without restraints) Performing minimization step: 1171. Total energy = 1045.2779 kcal/mol (1045.1601 without restraints) Performing minimization step: 1172. Total energy = 1044.2806 kcal/mol (1044.1630 without restraints) Performing minimization step: 1173. Total energy = 1043.2846 kcal/mol (1043.1671 without restraints) Performing minimization step: 1174. Total energy = 1042.2898 kcal/mol (1042.1725 without restraints) Performing minimization step: 1175. Total energy = 1041.2963 kcal/mol (1041.1791 without restraints) Performing minimization step: 1176. Total energy = 1040.3041 kcal/mol (1040.1871 without restraints) Performing minimization step: 1177. Total energy = 1039.3132 kcal/mol (1039.1963 without restraints) Performing minimization step: 1178. Total energy = 1038.3236 kcal/mol (1038.2068 without restraints) Performing minimization step: 1179. Total energy = 1037.3352 kcal/mol (1037.2186 without restraints) Performing minimization step: 1180. Total energy = 1036.3481 kcal/mol (1036.2317 without restraints) Performing minimization step: 1181. Total energy = 1035.3623 kcal/mol (1035.2460 without restraints) Performing minimization step: 1182. Total energy = 1034.3778 kcal/mol (1034.2616 without restraints) Performing minimization step: 1183. Total energy = 1033.3945 kcal/mol (1033.2785 without restraints) Performing minimization step: 1184. Total energy = 1032.4125 kcal/mol (1032.2967 without restraints) Performing minimization step: 1185. Total energy = 1031.4318 kcal/mol (1031.3161 without restraints) Performing minimization step: 1186. Total energy = 1030.4523 kcal/mol (1030.3367 without restraints) Performing minimization step: 1187. Total energy = 1029.4741 kcal/mol (1029.3587 without restraints) Performing minimization step: 1188. Total energy = 1028.4971 kcal/mol (1028.3819 without restraints) Performing minimization step: 1189. Total energy = 1027.5215 kcal/mol (1027.4064 without restraints) Performing minimization step: 1190. Total energy = 1026.5471 kcal/mol (1026.4321 without restraints) Performing minimization step: 1191. Total energy = 1025.5739 kcal/mol (1025.4591 without restraints) Performing minimization step: 1192. Total energy = 1024.6020 kcal/mol (1024.4873 without restraints) Performing minimization step: 1193. Total energy = 1023.6313 kcal/mol (1023.5168 without restraints) Performing minimization step: 1194. Total energy = 1022.6619 kcal/mol (1022.5476 without restraints) Performing minimization step: 1195. Total energy = 1021.6938 kcal/mol (1021.5796 without restraints) Performing minimization step: 1196. Total energy = 1020.7269 kcal/mol (1020.6128 without restraints) Performing minimization step: 1197. Total energy = 1019.7612 kcal/mol (1019.6473 without restraints) Performing minimization step: 1198. Total energy = 1018.7969 kcal/mol (1018.6831 without restraints) Performing minimization step: 1199. Total energy = 1017.8337 kcal/mol (1017.7201 without restraints) Performing minimization step: 1200. Total energy = 1016.8718 kcal/mol (1016.7584 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 1015.9112 kcal/mol (1015.7979 without restraints) Performing minimization step: 1202. Total energy = 1014.9518 kcal/mol (1014.8386 without restraints) Performing minimization step: 1203. Total energy = 1013.9936 kcal/mol (1013.8806 without restraints) Performing minimization step: 1204. Total energy = 1013.0367 kcal/mol (1012.9238 without restraints) Performing minimization step: 1205. Total energy = 1012.0810 kcal/mol (1011.9683 without restraints) Performing minimization step: 1206. Total energy = 1011.1266 kcal/mol (1011.0140 without restraints) Performing minimization step: 1207. Total energy = 1010.1734 kcal/mol (1010.0610 without restraints) Performing minimization step: 1208. Total energy = 1009.2215 kcal/mol (1009.1092 without restraints) Performing minimization step: 1209. Total energy = 1008.2708 kcal/mol (1008.1586 without restraints) Performing minimization step: 1210. Total energy = 1007.3213 kcal/mol (1007.2093 without restraints) Performing minimization step: 1211. Total energy = 1006.3731 kcal/mol (1006.2612 without restraints) Performing minimization step: 1212. Total energy = 1005.4261 kcal/mol (1005.3143 without restraints) Performing minimization step: 1213. Total energy = 1004.4803 kcal/mol (1004.3687 without restraints) Performing minimization step: 1214. Total energy = 1003.5357 kcal/mol (1003.4243 without restraints) Performing minimization step: 1215. Total energy = 1002.5924 kcal/mol (1002.4811 without restraints) Performing minimization step: 1216. Total energy = 1001.6503 kcal/mol (1001.5392 without restraints) Performing minimization step: 1217. Total energy = 1000.7094 kcal/mol (1000.5985 without restraints) Performing minimization step: 1218. Total energy = 999.7698 kcal/mol (999.6590 without restraints) Performing minimization step: 1219. Total energy = 998.8314 kcal/mol (998.7207 without restraints) Performing minimization step: 1220. Total energy = 997.8942 kcal/mol (997.7836 without restraints) Performing minimization step: 1221. Total energy = 996.9582 kcal/mol (996.8478 without restraints) Performing minimization step: 1222. Total energy = 996.0235 kcal/mol (995.9132 without restraints) Performing minimization step: 1223. Total energy = 995.0899 kcal/mol (994.9798 without restraints) Performing minimization step: 1224. Total energy = 994.1576 kcal/mol (994.0477 without restraints) Performing minimization step: 1225. Total energy = 993.2265 kcal/mol (993.1167 without restraints) Performing minimization step: 1226. Total energy = 992.2967 kcal/mol (992.1870 without restraints) Performing minimization step: 1227. Total energy = 991.3680 kcal/mol (991.2585 without restraints) Performing minimization step: 1228. Total energy = 990.4406 kcal/mol (990.3312 without restraints) Performing minimization step: 1229. Total energy = 989.5143 kcal/mol (989.4051 without restraints) Performing minimization step: 1230. Total energy = 988.5893 kcal/mol (988.4802 without restraints) Performing minimization step: 1231. Total energy = 987.6655 kcal/mol (987.5565 without restraints) Performing minimization step: 1232. Total energy = 986.7429 kcal/mol (986.6340 without restraints) Performing minimization step: 1233. Total energy = 985.8215 kcal/mol (985.7128 without restraints) Performing minimization step: 1234. Total energy = 984.9013 kcal/mol (984.7927 without restraints) Performing minimization step: 1235. Total energy = 983.9823 kcal/mol (983.8739 without restraints) Performing minimization step: 1236. Total energy = 983.0646 kcal/mol (982.9563 without restraints) Performing minimization step: 1237. Total energy = 982.1480 kcal/mol (982.0399 without restraints) Performing minimization step: 1238. Total energy = 981.2326 kcal/mol (981.1246 without restraints) Performing minimization step: 1239. Total energy = 980.3185 kcal/mol (980.2107 without restraints) Performing minimization step: 1240. Total energy = 979.4057 kcal/mol (979.2981 without restraints) Performing minimization step: 1241. Total energy = 978.4940 kcal/mol (978.3864 without restraints) Performing minimization step: 1242. Total energy = 977.5834 kcal/mol (977.4760 without restraints) Performing minimization step: 1243. Total energy = 976.6740 kcal/mol (976.5668 without restraints) Performing minimization step: 1244. Total energy = 975.7658 kcal/mol (975.6587 without restraints) Performing minimization step: 1245. Total energy = 974.8588 kcal/mol (974.7518 without restraints) Performing minimization step: 1246. Total energy = 973.9530 kcal/mol (973.8462 without restraints) Performing minimization step: 1247. Total energy = 973.0484 kcal/mol (972.9417 without restraints) Performing minimization step: 1248. Total energy = 972.1451 kcal/mol (972.0387 without restraints) Performing minimization step: 1249. Total energy = 971.2431 kcal/mol (971.1367 without restraints) Performing minimization step: 1250. Total energy = 970.3421 kcal/mol (970.2358 without restraints) Performing minimization step: 1251. Total energy = 969.4421 kcal/mol (969.3360 without restraints) Performing minimization step: 1252. Total energy = 968.5435 kcal/mol (968.4375 without restraints) Performing minimization step: 1253. Total energy = 967.6460 kcal/mol (967.5402 without restraints) Performing minimization step: 1254. Total energy = 966.7497 kcal/mol (966.6440 without restraints) Performing minimization step: 1255. Total energy = 965.8546 kcal/mol (965.7491 without restraints) Performing minimization step: 1256. Total energy = 964.9607 kcal/mol (964.8553 without restraints) Performing minimization step: 1257. Total energy = 964.0680 kcal/mol (963.9627 without restraints) Performing minimization step: 1258. Total energy = 963.1765 kcal/mol (963.0713 without restraints) Performing minimization step: 1259. Total energy = 962.2861 kcal/mol (962.1811 without restraints) Performing minimization step: 1260. Total energy = 961.3970 kcal/mol (961.2921 without restraints) Performing minimization step: 1261. Total energy = 960.5089 kcal/mol (960.4042 without restraints) Performing minimization step: 1262. Total energy = 959.6221 kcal/mol (959.5175 without restraints) Performing minimization step: 1263. Total energy = 958.7365 kcal/mol (958.6320 without restraints) Performing minimization step: 1264. Total energy = 957.8522 kcal/mol (957.7479 without restraints) Performing minimization step: 1265. Total energy = 956.9689 kcal/mol (956.8647 without restraints) Performing minimization step: 1266. Total energy = 956.0867 kcal/mol (955.9827 without restraints) Performing minimization step: 1267. Total energy = 955.2058 kcal/mol (955.1019 without restraints) Performing minimization step: 1268. Total energy = 954.3260 kcal/mol (954.2222 without restraints) Performing minimization step: 1269. Total energy = 953.4474 kcal/mol (953.3437 without restraints) Performing minimization step: 1270. Total energy = 952.5699 kcal/mol (952.4664 without restraints) Performing minimization step: 1271. Total energy = 951.6936 kcal/mol (951.5903 without restraints) Performing minimization step: 1272. Total energy = 950.8185 kcal/mol (950.7153 without restraints) Performing minimization step: 1273. Total energy = 949.9443 kcal/mol (949.8412 without restraints) Performing minimization step: 1274. Total energy = 949.0715 kcal/mol (948.9686 without restraints) Performing minimization step: 1275. Total energy = 948.1999 kcal/mol (948.0971 without restraints) Performing minimization step: 1276. Total energy = 947.3295 kcal/mol (947.2268 without restraints) Performing minimization step: 1277. Total energy = 946.4604 kcal/mol (946.3578 without restraints) Performing minimization step: 1278. Total energy = 945.5922 kcal/mol (945.4898 without restraints) Performing minimization step: 1279. Total energy = 944.7252 kcal/mol (944.6230 without restraints) Performing minimization step: 1280. Total energy = 943.8594 kcal/mol (943.7573 without restraints) Performing minimization step: 1281. Total energy = 942.9947 kcal/mol (942.8928 without restraints) Performing minimization step: 1282. Total energy = 942.1312 kcal/mol (942.0294 without restraints) Performing minimization step: 1283. Total energy = 941.2689 kcal/mol (941.1672 without restraints) Performing minimization step: 1284. Total energy = 940.4078 kcal/mol (940.3063 without restraints) Performing minimization step: 1285. Total energy = 939.5478 kcal/mol (939.4464 without restraints) Performing minimization step: 1286. Total energy = 938.6889 kcal/mol (938.5876 without restraints) Performing minimization step: 1287. Total energy = 937.8312 kcal/mol (937.7300 without restraints) Performing minimization step: 1288. Total energy = 936.9747 kcal/mol (936.8736 without restraints) Performing minimization step: 1289. Total energy = 936.1192 kcal/mol (936.0183 without restraints) Performing minimization step: 1290. Total energy = 935.2649 kcal/mol (935.1642 without restraints) Performing minimization step: 1291. Total energy = 934.4118 kcal/mol (934.3112 without restraints) Performing minimization step: 1292. Total energy = 933.5598 kcal/mol (933.4593 without restraints) Performing minimization step: 1293. Total energy = 932.7090 kcal/mol (932.6086 without restraints) Performing minimization step: 1294. Total energy = 931.8593 kcal/mol (931.7591 without restraints) Performing minimization step: 1295. Total energy = 931.0105 kcal/mol (930.9104 without restraints) Performing minimization step: 1296. Total energy = 930.1631 kcal/mol (930.0632 without restraints) Performing minimization step: 1297. Total energy = 929.3169 kcal/mol (929.2170 without restraints) Performing minimization step: 1298. Total energy = 928.4717 kcal/mol (928.3720 without restraints) Performing minimization step: 1299. Total energy = 927.6278 kcal/mol (927.5282 without restraints) Performing minimization step: 1300. Total energy = 926.7850 kcal/mol (926.6856 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 925.9433 kcal/mol (925.8440 without restraints) Performing minimization step: 1302. Total energy = 925.1027 kcal/mol (925.0036 without restraints) Performing minimization step: 1303. Total energy = 924.2633 kcal/mol (924.1643 without restraints) Performing minimization step: 1304. Total energy = 923.4250 kcal/mol (923.3261 without restraints) Performing minimization step: 1305. Total energy = 922.5879 kcal/mol (922.4891 without restraints) Performing minimization step: 1306. Total energy = 921.7516 kcal/mol (921.6530 without restraints) Performing minimization step: 1307. Total energy = 920.9168 kcal/mol (920.8183 without restraints) Performing minimization step: 1308. Total energy = 920.0830 kcal/mol (919.9847 without restraints) Performing minimization step: 1309. Total energy = 919.2504 kcal/mol (919.1522 without restraints) Performing minimization step: 1310. Total energy = 918.4189 kcal/mol (918.3208 without restraints) Performing minimization step: 1311. Total energy = 917.5884 kcal/mol (917.4903 without restraints) Performing minimization step: 1312. Total energy = 916.7592 kcal/mol (916.6614 without restraints) Performing minimization step: 1313. Total energy = 915.9311 kcal/mol (915.8334 without restraints) Performing minimization step: 1314. Total energy = 915.1041 kcal/mol (915.0066 without restraints) Performing minimization step: 1315. Total energy = 914.2783 kcal/mol (914.1809 without restraints) Performing minimization step: 1316. Total energy = 913.4536 kcal/mol (913.3563 without restraints) Performing minimization step: 1317. Total energy = 912.6300 kcal/mol (912.5328 without restraints) Performing minimization step: 1318. Total energy = 911.8075 kcal/mol (911.7105 without restraints) Performing minimization step: 1319. Total energy = 910.9862 kcal/mol (910.8893 without restraints) Performing minimization step: 1320. Total energy = 910.1660 kcal/mol (910.0692 without restraints) Performing minimization step: 1321. Total energy = 909.3469 kcal/mol (909.2503 without restraints) Performing minimization step: 1322. Total energy = 908.5289 kcal/mol (908.4325 without restraints) Performing minimization step: 1323. Total energy = 907.7121 kcal/mol (907.6157 without restraints) Performing minimization step: 1324. Total energy = 906.8964 kcal/mol (906.8001 without restraints) Performing minimization step: 1325. Total energy = 906.0820 kcal/mol (905.9859 without restraints) Performing minimization step: 1326. Total energy = 905.2685 kcal/mol (905.1726 without restraints) Performing minimization step: 1327. Total energy = 904.4561 kcal/mol (904.3603 without restraints) Performing minimization step: 1328. Total energy = 903.6449 kcal/mol (903.5492 without restraints) Performing minimization step: 1329. Total energy = 902.8347 kcal/mol (902.7392 without restraints) Performing minimization step: 1330. Total energy = 902.0257 kcal/mol (901.9303 without restraints) Performing minimization step: 1331. Total energy = 901.2178 kcal/mol (901.1225 without restraints) Performing minimization step: 1332. Total energy = 900.4110 kcal/mol (900.3158 without restraints) Performing minimization step: 1333. Total energy = 899.6053 kcal/mol (899.5102 without restraints) Performing minimization step: 1334. Total energy = 898.8009 kcal/mol (898.7060 without restraints) Performing minimization step: 1335. Total energy = 897.9975 kcal/mol (897.9027 without restraints) Performing minimization step: 1336. Total energy = 897.1951 kcal/mol (897.1005 without restraints) Performing minimization step: 1337. Total energy = 896.3939 kcal/mol (896.2993 without restraints) Performing minimization step: 1338. Total energy = 895.5937 kcal/mol (895.4993 without restraints) Performing minimization step: 1339. Total energy = 894.7947 kcal/mol (894.7004 without restraints) Performing minimization step: 1340. Total energy = 893.9967 kcal/mol (893.9026 without restraints) Performing minimization step: 1341. Total energy = 893.1999 kcal/mol (893.1059 without restraints) Performing minimization step: 1342. Total energy = 892.4042 kcal/mol (892.3103 without restraints) Performing minimization step: 1343. Total energy = 891.6096 kcal/mol (891.5159 without restraints) Performing minimization step: 1344. Total energy = 890.8163 kcal/mol (890.7227 without restraints) Performing minimization step: 1345. Total energy = 890.0239 kcal/mol (889.9304 without restraints) Performing minimization step: 1346. Total energy = 889.2326 kcal/mol (889.1392 without restraints) Performing minimization step: 1347. Total energy = 888.4424 kcal/mol (888.3491 without restraints) Performing minimization step: 1348. Total energy = 887.6532 kcal/mol (887.5602 without restraints) Performing minimization step: 1349. Total energy = 886.8652 kcal/mol (886.7723 without restraints) Performing minimization step: 1350. Total energy = 886.0783 kcal/mol (885.9855 without restraints) Performing minimization step: 1351. Total energy = 885.2925 kcal/mol (885.1998 without restraints) Performing minimization step: 1352. Total energy = 884.5078 kcal/mol (884.4153 without restraints) Performing minimization step: 1353. Total energy = 883.7242 kcal/mol (883.6318 without restraints) Performing minimization step: 1354. Total energy = 882.9417 kcal/mol (882.8494 without restraints) Performing minimization step: 1355. Total energy = 882.1603 kcal/mol (882.0681 without restraints) Performing minimization step: 1356. Total energy = 881.3800 kcal/mol (881.2879 without restraints) Performing minimization step: 1357. Total energy = 880.6007 kcal/mol (880.5088 without restraints) Performing minimization step: 1358. Total energy = 879.8226 kcal/mol (879.7308 without restraints) Performing minimization step: 1359. Total energy = 879.0455 kcal/mol (878.9539 without restraints) Performing minimization step: 1360. Total energy = 878.2695 kcal/mol (878.1780 without restraints) Performing minimization step: 1361. Total energy = 877.4948 kcal/mol (877.4035 without restraints) Performing minimization step: 1362. Total energy = 876.7211 kcal/mol (876.6298 without restraints) Performing minimization step: 1363. Total energy = 875.9484 kcal/mol (875.8572 without restraints) Performing minimization step: 1364. Total energy = 875.1769 kcal/mol (875.0859 without restraints) Performing minimization step: 1365. Total energy = 874.4064 kcal/mol (874.3156 without restraints) Performing minimization step: 1366. Total energy = 873.6370 kcal/mol (873.5463 without restraints) Performing minimization step: 1367. Total energy = 872.8687 kcal/mol (872.7780 without restraints) Performing minimization step: 1368. Total energy = 872.1015 kcal/mol (872.0110 without restraints) Performing minimization step: 1369. Total energy = 871.3353 kcal/mol (871.2449 without restraints) Performing minimization step: 1370. Total energy = 870.5702 kcal/mol (870.4800 without restraints) Performing minimization step: 1371. Total energy = 869.8062 kcal/mol (869.7161 without restraints) Performing minimization step: 1372. Total energy = 869.0433 kcal/mol (868.9533 without restraints) Performing minimization step: 1373. Total energy = 868.2814 kcal/mol (868.1916 without restraints) Performing minimization step: 1374. Total energy = 867.5204 kcal/mol (867.4307 without restraints) Performing minimization step: 1375. Total energy = 866.7608 kcal/mol (866.6712 without restraints) Performing minimization step: 1376. Total energy = 866.0022 kcal/mol (865.9127 without restraints) Performing minimization step: 1377. Total energy = 865.2446 kcal/mol (865.1553 without restraints) Performing minimization step: 1378. Total energy = 864.4882 kcal/mol (864.3989 without restraints) Performing minimization step: 1379. Total energy = 863.7328 kcal/mol (863.6437 without restraints) Performing minimization step: 1380. Total energy = 862.9785 kcal/mol (862.8895 without restraints) Performing minimization step: 1381. Total energy = 862.2253 kcal/mol (862.1365 without restraints) Performing minimization step: 1382. Total energy = 861.4732 kcal/mol (861.3845 without restraints) Performing minimization step: 1383. Total energy = 860.7221 kcal/mol (860.6335 without restraints) Performing minimization step: 1384. Total energy = 859.9721 kcal/mol (859.8837 without restraints) Performing minimization step: 1385. Total energy = 859.2232 kcal/mol (859.1349 without restraints) Performing minimization step: 1386. Total energy = 858.4754 kcal/mol (858.3872 without restraints) Performing minimization step: 1387. Total energy = 857.7286 kcal/mol (857.6405 without restraints) Performing minimization step: 1388. Total energy = 856.9829 kcal/mol (856.8950 without restraints) Performing minimization step: 1389. Total energy = 856.2383 kcal/mol (856.1505 without restraints) Performing minimization step: 1390. Total energy = 855.4947 kcal/mol (855.4070 without restraints) Performing minimization step: 1391. Total energy = 854.7525 kcal/mol (854.6649 without restraints) Performing minimization step: 1392. Total energy = 854.0111 kcal/mol (853.9236 without restraints) Performing minimization step: 1393. Total energy = 853.2709 kcal/mol (853.1836 without restraints) Performing minimization step: 1394. Total energy = 852.5316 kcal/mol (852.4444 without restraints) Performing minimization step: 1395. Total energy = 851.7934 kcal/mol (851.7064 without restraints) Performing minimization step: 1396. Total energy = 851.0563 kcal/mol (850.9694 without restraints) Performing minimization step: 1397. Total energy = 850.3203 kcal/mol (850.2335 without restraints) Performing minimization step: 1398. Total energy = 849.5853 kcal/mol (849.4986 without restraints) Performing minimization step: 1399. Total energy = 848.8513 kcal/mol (848.7647 without restraints) Performing minimization step: 1400. Total energy = 848.1184 kcal/mol (848.0320 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 847.3866 kcal/mol (847.3003 without restraints) Performing minimization step: 1402. Total energy = 846.6558 kcal/mol (846.5696 without restraints) Performing minimization step: 1403. Total energy = 845.9261 kcal/mol (845.8400 without restraints) Performing minimization step: 1404. Total energy = 845.1974 kcal/mol (845.1115 without restraints) Performing minimization step: 1405. Total energy = 844.4699 kcal/mol (844.3840 without restraints) Performing minimization step: 1406. Total energy = 843.7433 kcal/mol (843.6576 without restraints) Performing minimization step: 1407. Total energy = 843.0179 kcal/mol (842.9323 without restraints) Performing minimization step: 1408. Total energy = 842.2934 kcal/mol (842.2080 without restraints) Performing minimization step: 1409. Total energy = 841.5701 kcal/mol (841.4848 without restraints) Performing minimization step: 1410. Total energy = 840.8478 kcal/mol (840.7626 without restraints) Performing minimization step: 1411. Total energy = 840.1266 kcal/mol (840.0415 without restraints) Performing minimization step: 1412. Total energy = 839.4064 kcal/mol (839.3214 without restraints) Performing minimization step: 1413. Total energy = 838.6873 kcal/mol (838.6024 without restraints) Performing minimization step: 1414. Total energy = 837.9692 kcal/mol (837.8845 without restraints) Performing minimization step: 1415. Total energy = 837.2522 kcal/mol (837.1676 without restraints) Performing minimization step: 1416. Total energy = 836.5362 kcal/mol (836.4517 without restraints) Performing minimization step: 1417. Total energy = 835.8213 kcal/mol (835.7369 without restraints) Performing minimization step: 1418. Total energy = 835.1073 kcal/mol (835.0230 without restraints) Performing minimization step: 1419. Total energy = 834.3944 kcal/mol (834.3103 without restraints) Performing minimization step: 1420. Total energy = 833.6825 kcal/mol (833.5986 without restraints) Performing minimization step: 1421. Total energy = 832.9718 kcal/mol (832.8880 without restraints) Performing minimization step: 1422. Total energy = 832.2621 kcal/mol (832.1784 without restraints) Performing minimization step: 1423. Total energy = 831.5535 kcal/mol (831.4699 without restraints) Performing minimization step: 1424. Total energy = 830.8459 kcal/mol (830.7625 without restraints) Performing minimization step: 1425. Total energy = 830.1392 kcal/mol (830.0559 without restraints) Performing minimization step: 1426. Total energy = 829.4337 kcal/mol (829.3505 without restraints) Performing minimization step: 1427. Total energy = 828.7293 kcal/mol (828.6462 without restraints) Performing minimization step: 1428. Total energy = 828.0259 kcal/mol (827.9429 without restraints) Performing minimization step: 1429. Total energy = 827.3235 kcal/mol (827.2407 without restraints) Performing minimization step: 1430. Total energy = 826.6222 kcal/mol (826.5395 without restraints) Performing minimization step: 1431. Total energy = 825.9219 kcal/mol (825.8394 without restraints) Performing minimization step: 1432. Total energy = 825.2227 kcal/mol (825.1403 without restraints) Performing minimization step: 1433. Total energy = 824.5244 kcal/mol (824.4420 without restraints) Performing minimization step: 1434. Total energy = 823.8272 kcal/mol (823.7450 without restraints) Performing minimization step: 1435. Total energy = 823.1311 kcal/mol (823.0490 without restraints) Performing minimization step: 1436. Total energy = 822.4363 kcal/mol (822.3543 without restraints) Performing minimization step: 1437. Total energy = 821.7422 kcal/mol (821.6602 without restraints) Performing minimization step: 1438. Total energy = 821.0491 kcal/mol (820.9673 without restraints) Performing minimization step: 1439. Total energy = 820.3571 kcal/mol (820.2755 without restraints) Performing minimization step: 1440. Total energy = 819.6662 kcal/mol (819.5847 without restraints) Performing minimization step: 1441. Total energy = 818.9765 kcal/mol (818.8952 without restraints) Performing minimization step: 1442. Total energy = 818.2877 kcal/mol (818.2064 without restraints) Performing minimization step: 1443. Total energy = 817.5999 kcal/mol (817.5188 without restraints) Performing minimization step: 1444. Total energy = 816.9131 kcal/mol (816.8321 without restraints) Performing minimization step: 1445. Total energy = 816.2274 kcal/mol (816.1465 without restraints) Performing minimization step: 1446. Total energy = 815.5427 kcal/mol (815.4619 without restraints) Performing minimization step: 1447. Total energy = 814.8592 kcal/mol (814.7786 without restraints) Performing minimization step: 1448. Total energy = 814.1766 kcal/mol (814.0961 without restraints) Performing minimization step: 1449. Total energy = 813.4950 kcal/mol (813.4146 without restraints) Performing minimization step: 1450. Total energy = 812.8144 kcal/mol (812.7341 without restraints) Performing minimization step: 1451. Total energy = 812.1347 kcal/mol (812.0545 without restraints) Performing minimization step: 1452. Total energy = 811.4562 kcal/mol (811.3761 without restraints) Performing minimization step: 1453. Total energy = 810.7787 kcal/mol (810.6988 without restraints) Performing minimization step: 1454. Total energy = 810.1022 kcal/mol (810.0224 without restraints) Performing minimization step: 1455. Total energy = 809.4266 kcal/mol (809.3470 without restraints) Performing minimization step: 1456. Total energy = 808.7522 kcal/mol (808.6727 without restraints) Performing minimization step: 1457. Total energy = 808.0788 kcal/mol (807.9994 without restraints) Performing minimization step: 1458. Total energy = 807.4064 kcal/mol (807.3271 without restraints) Performing minimization step: 1459. Total energy = 806.7351 kcal/mol (806.6559 without restraints) Performing minimization step: 1460. Total energy = 806.0648 kcal/mol (805.9858 without restraints) Performing minimization step: 1461. Total energy = 805.3955 kcal/mol (805.3166 without restraints) Performing minimization step: 1462. Total energy = 804.7273 kcal/mol (804.6485 without restraints) Performing minimization step: 1463. Total energy = 804.0600 kcal/mol (803.9813 without restraints) Performing minimization step: 1464. Total energy = 803.3939 kcal/mol (803.3153 without restraints) Performing minimization step: 1465. Total energy = 802.7287 kcal/mol (802.6503 without restraints) Performing minimization step: 1466. Total energy = 802.0646 kcal/mol (801.9862 without restraints) Performing minimization step: 1467. Total energy = 801.4014 kcal/mol (801.3232 without restraints) Performing minimization step: 1468. Total energy = 800.7393 kcal/mol (800.6612 without restraints) Performing minimization step: 1469. Total energy = 800.0782 kcal/mol (800.0002 without restraints) Performing minimization step: 1470. Total energy = 799.4181 kcal/mol (799.3402 without restraints) Performing minimization step: 1471. Total energy = 798.7590 kcal/mol (798.6813 without restraints) Performing minimization step: 1472. Total energy = 798.1009 kcal/mol (798.0233 without restraints) Performing minimization step: 1473. Total energy = 797.4439 kcal/mol (797.3664 without restraints) Performing minimization step: 1474. Total energy = 796.7879 kcal/mol (796.7105 without restraints) Performing minimization step: 1475. Total energy = 796.1328 kcal/mol (796.0556 without restraints) Performing minimization step: 1476. Total energy = 795.4788 kcal/mol (795.4017 without restraints) Performing minimization step: 1477. Total energy = 794.8258 kcal/mol (794.7488 without restraints) Performing minimization step: 1478. Total energy = 794.1739 kcal/mol (794.0970 without restraints) Performing minimization step: 1479. Total energy = 793.5229 kcal/mol (793.4461 without restraints) Performing minimization step: 1480. Total energy = 792.8729 kcal/mol (792.7962 without restraints) Performing minimization step: 1481. Total energy = 792.2240 kcal/mol (792.1474 without restraints) Performing minimization step: 1482. Total energy = 791.5760 kcal/mol (791.4996 without restraints) Performing minimization step: 1483. Total energy = 790.9291 kcal/mol (790.8528 without restraints) Performing minimization step: 1484. Total energy = 790.2832 kcal/mol (790.2070 without restraints) Performing minimization step: 1485. Total energy = 789.6383 kcal/mol (789.5622 without restraints) Performing minimization step: 1486. Total energy = 788.9942 kcal/mol (788.9182 without restraints) Performing minimization step: 1487. Total energy = 788.3515 kcal/mol (788.2756 without restraints) Performing minimization step: 1488. Total energy = 787.7096 kcal/mol (787.6339 without restraints) Performing minimization step: 1489. Total energy = 787.0687 kcal/mol (786.9931 without restraints) Performing minimization step: 1490. Total energy = 786.4289 kcal/mol (786.3534 without restraints) Performing minimization step: 1491. Total energy = 785.7900 kcal/mol (785.7146 without restraints) Performing minimization step: 1492. Total energy = 785.1521 kcal/mol (785.0769 without restraints) Performing minimization step: 1493. Total energy = 784.5153 kcal/mol (784.4402 without restraints) Performing minimization step: 1494. Total energy = 783.8795 kcal/mol (783.8045 without restraints) Performing minimization step: 1495. Total energy = 783.2446 kcal/mol (783.1697 without restraints) Performing minimization step: 1496. Total energy = 782.6107 kcal/mol (782.5360 without restraints) Performing minimization step: 1497. Total energy = 781.9779 kcal/mol (781.9033 without restraints) Performing minimization step: 1498. Total energy = 781.3460 kcal/mol (781.2715 without restraints) Performing minimization step: 1499. Total energy = 780.7152 kcal/mol (780.6408 without restraints) Performing minimization step: 1500. Total energy = 780.0853 kcal/mol (780.0111 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 779.4565 kcal/mol (779.3823 without restraints) Performing minimization step: 1502. Total energy = 778.8286 kcal/mol (778.7545 without restraints) Performing minimization step: 1503. Total energy = 778.2017 kcal/mol (778.1278 without restraints) Performing minimization step: 1504. Total energy = 777.5759 kcal/mol (777.5021 without restraints) Performing minimization step: 1505. Total energy = 776.9510 kcal/mol (776.8773 without restraints) Performing minimization step: 1506. Total energy = 776.3271 kcal/mol (776.2535 without restraints) Performing minimization step: 1507. Total energy = 775.7042 kcal/mol (775.6308 without restraints) Performing minimization step: 1508. Total energy = 775.0824 kcal/mol (775.0090 without restraints) Performing minimization step: 1509. Total energy = 774.4615 kcal/mol (774.3882 without restraints) Performing minimization step: 1510. Total energy = 773.8416 kcal/mol (773.7684 without restraints) Performing minimization step: 1511. Total energy = 773.2227 kcal/mol (773.1497 without restraints) Performing minimization step: 1512. Total energy = 772.6047 kcal/mol (772.5319 without restraints) Performing minimization step: 1513. Total energy = 771.9878 kcal/mol (771.9150 without restraints) Performing minimization step: 1514. Total energy = 771.3719 kcal/mol (771.2992 without restraints) Performing minimization step: 1515. Total energy = 770.7569 kcal/mol (770.6844 without restraints) Performing minimization step: 1516. Total energy = 770.1429 kcal/mol (770.0705 without restraints) Performing minimization step: 1517. Total energy = 769.5299 kcal/mol (769.4576 without restraints) Performing minimization step: 1518. Total energy = 768.9179 kcal/mol (768.8458 without restraints) Performing minimization step: 1519. Total energy = 768.3069 kcal/mol (768.2349 without restraints) Performing minimization step: 1520. Total energy = 767.6969 kcal/mol (767.6250 without restraints) Performing minimization step: 1521. Total energy = 767.0879 kcal/mol (767.0161 without restraints) Performing minimization step: 1522. Total energy = 766.4799 kcal/mol (766.4082 without restraints) Performing minimization step: 1523. Total energy = 765.8728 kcal/mol (765.8012 without restraints) Performing minimization step: 1524. Total energy = 765.2667 kcal/mol (765.1952 without restraints) Performing minimization step: 1525. Total energy = 764.6616 kcal/mol (764.5902 without restraints) Performing minimization step: 1526. Total energy = 764.0575 kcal/mol (763.9862 without restraints) Performing minimization step: 1527. Total energy = 763.4543 kcal/mol (763.3832 without restraints) Performing minimization step: 1528. Total energy = 762.8522 kcal/mol (762.7811 without restraints) Performing minimization step: 1529. Total energy = 762.2510 kcal/mol (762.1801 without restraints) Performing minimization step: 1530. Total energy = 761.6508 kcal/mol (761.5800 without restraints) Performing minimization step: 1531. Total energy = 761.0516 kcal/mol (760.9809 without restraints) Performing minimization step: 1532. Total energy = 760.4533 kcal/mol (760.3828 without restraints) Performing minimization step: 1533. Total energy = 759.8561 kcal/mol (759.7856 without restraints) Performing minimization step: 1534. Total energy = 759.2598 kcal/mol (759.1895 without restraints) Performing minimization step: 1535. Total energy = 758.6645 kcal/mol (758.5943 without restraints) Performing minimization step: 1536. Total energy = 758.0701 kcal/mol (758.0000 without restraints) Performing minimization step: 1537. Total energy = 757.4768 kcal/mol (757.4068 without restraints) Performing minimization step: 1538. Total energy = 756.8844 kcal/mol (756.8145 without restraints) Performing minimization step: 1539. Total energy = 756.2932 kcal/mol (756.2234 without restraints) Performing minimization step: 1540. Total energy = 755.7027 kcal/mol (755.6331 without restraints) Performing minimization step: 1541. Total energy = 755.1132 kcal/mol (755.0437 without restraints) Performing minimization step: 1542. Total energy = 754.5247 kcal/mol (754.4553 without restraints) Performing minimization step: 1543. Total energy = 753.9372 kcal/mol (753.8679 without restraints) Performing minimization step: 1544. Total energy = 753.3507 kcal/mol (753.2815 without restraints) Performing minimization step: 1545. Total energy = 752.7651 kcal/mol (752.6960 without restraints) Performing minimization step: 1546. Total energy = 752.1804 kcal/mol (752.1115 without restraints) Performing minimization step: 1547. Total energy = 751.5968 kcal/mol (751.5280 without restraints) Performing minimization step: 1548. Total energy = 751.0141 kcal/mol (750.9454 without restraints) Performing minimization step: 1549. Total energy = 750.4324 kcal/mol (750.3638 without restraints) Performing minimization step: 1550. Total energy = 749.8516 kcal/mol (749.7831 without restraints) Performing minimization step: 1551. Total energy = 749.2718 kcal/mol (749.2035 without restraints) Performing minimization step: 1552. Total energy = 748.6930 kcal/mol (748.6247 without restraints) Performing minimization step: 1553. Total energy = 748.1151 kcal/mol (748.0470 without restraints) Performing minimization step: 1554. Total energy = 747.5382 kcal/mol (747.4702 without restraints) Performing minimization step: 1555. Total energy = 746.9623 kcal/mol (746.8944 without restraints) Performing minimization step: 1556. Total energy = 746.3873 kcal/mol (746.3195 without restraints) Performing minimization step: 1557. Total energy = 745.8133 kcal/mol (745.7456 without restraints) Performing minimization step: 1558. Total energy = 745.2402 kcal/mol (745.1726 without restraints) Performing minimization step: 1559. Total energy = 744.6681 kcal/mol (744.6006 without restraints) Performing minimization step: 1560. Total energy = 744.0970 kcal/mol (744.0296 without restraints) Performing minimization step: 1561. Total energy = 743.5268 kcal/mol (743.4595 without restraints) Performing minimization step: 1562. Total energy = 742.9576 kcal/mol (742.8904 without restraints) Performing minimization step: 1563. Total energy = 742.3893 kcal/mol (742.3223 without restraints) Performing minimization step: 1564. Total energy = 741.8220 kcal/mol (741.7551 without restraints) Performing minimization step: 1565. Total energy = 741.2556 kcal/mol (741.1888 without restraints) Performing minimization step: 1566. Total energy = 740.6902 kcal/mol (740.6235 without restraints) Performing minimization step: 1567. Total energy = 740.1257 kcal/mol (740.0592 without restraints) Performing minimization step: 1568. Total energy = 739.5622 kcal/mol (739.4958 without restraints) Performing minimization step: 1569. Total energy = 738.9997 kcal/mol (738.9333 without restraints) Performing minimization step: 1570. Total energy = 738.4381 kcal/mol (738.3718 without restraints) Performing minimization step: 1571. Total energy = 737.8774 kcal/mol (737.8113 without restraints) Performing minimization step: 1572. Total energy = 737.3177 kcal/mol (737.2517 without restraints) Performing minimization step: 1573. Total energy = 736.7589 kcal/mol (736.6930 without restraints) Performing minimization step: 1574. Total energy = 736.2012 kcal/mol (736.1354 without restraints) Performing minimization step: 1575. Total energy = 735.6443 kcal/mol (735.5786 without restraints) Performing minimization step: 1576. Total energy = 735.0884 kcal/mol (735.0228 without restraints) Performing minimization step: 1577. Total energy = 734.5334 kcal/mol (734.4680 without restraints) Performing minimization step: 1578. Total energy = 733.9794 kcal/mol (733.9141 without restraints) Performing minimization step: 1579. Total energy = 733.4263 kcal/mol (733.3611 without restraints) Performing minimization step: 1580. Total energy = 732.8742 kcal/mol (732.8091 without restraints) Performing minimization step: 1581. Total energy = 732.3230 kcal/mol (732.2580 without restraints) Performing minimization step: 1582. Total energy = 731.7728 kcal/mol (731.7079 without restraints) Performing minimization step: 1583. Total energy = 731.2234 kcal/mol (731.1587 without restraints) Performing minimization step: 1584. Total energy = 730.6751 kcal/mol (730.6104 without restraints) Performing minimization step: 1585. Total energy = 730.1276 kcal/mol (730.0631 without restraints) Performing minimization step: 1586. Total energy = 729.5811 kcal/mol (729.5167 without restraints) Performing minimization step: 1587. Total energy = 729.0356 kcal/mol (728.9712 without restraints) Performing minimization step: 1588. Total energy = 728.4910 kcal/mol (728.4267 without restraints) Performing minimization step: 1589. Total energy = 727.9473 kcal/mol (727.8832 without restraints) Performing minimization step: 1590. Total energy = 727.4045 kcal/mol (727.3405 without restraints) Performing minimization step: 1591. Total energy = 726.8627 kcal/mol (726.7988 without restraints) Performing minimization step: 1592. Total energy = 726.3218 kcal/mol (726.2581 without restraints) Performing minimization step: 1593. Total energy = 725.7819 kcal/mol (725.7182 without restraints) Performing minimization step: 1594. Total energy = 725.2429 kcal/mol (725.1793 without restraints) Performing minimization step: 1595. Total energy = 724.7048 kcal/mol (724.6414 without restraints) Performing minimization step: 1596. Total energy = 724.1677 kcal/mol (724.1043 without restraints) Performing minimization step: 1597. Total energy = 723.6314 kcal/mol (723.5682 without restraints) Performing minimization step: 1598. Total energy = 723.0962 kcal/mol (723.0330 without restraints) Performing minimization step: 1599. Total energy = 722.5618 kcal/mol (722.4988 without restraints) Performing minimization step: 1600. Total energy = 722.0284 kcal/mol (721.9654 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 721.4958 kcal/mol (721.4330 without restraints) Performing minimization step: 1602. Total energy = 720.9643 kcal/mol (720.9016 without restraints) Performing minimization step: 1603. Total energy = 720.4337 kcal/mol (720.3711 without restraints) Performing minimization step: 1604. Total energy = 719.9039 kcal/mol (719.8414 without restraints) Performing minimization step: 1605. Total energy = 719.3752 kcal/mol (719.3128 without restraints) Performing minimization step: 1606. Total energy = 718.8473 kcal/mol (718.7850 without restraints) Performing minimization step: 1607. Total energy = 718.3203 kcal/mol (718.2582 without restraints) Performing minimization step: 1608. Total energy = 717.7943 kcal/mol (717.7323 without restraints) Performing minimization step: 1609. Total energy = 717.2691 kcal/mol (717.2072 without restraints) Performing minimization step: 1610. Total energy = 716.7449 kcal/mol (716.6831 without restraints) Performing minimization step: 1611. Total energy = 716.2217 kcal/mol (716.1599 without restraints) Performing minimization step: 1612. Total energy = 715.6993 kcal/mol (715.6377 without restraints) Performing minimization step: 1613. Total energy = 715.1777 kcal/mol (715.1161 without restraints) Performing minimization step: 1614. Total energy = 714.6571 kcal/mol (714.5957 without restraints) Performing minimization step: 1615. Total energy = 714.1375 kcal/mol (714.0762 without restraints) Performing minimization step: 1616. Total energy = 713.6188 kcal/mol (713.5576 without restraints) Performing minimization step: 1617. Total energy = 713.1010 kcal/mol (713.0399 without restraints) Performing minimization step: 1618. Total energy = 712.5841 kcal/mol (712.5232 without restraints) Performing minimization step: 1619. Total energy = 712.0681 kcal/mol (712.0073 without restraints) Performing minimization step: 1620. Total energy = 711.5531 kcal/mol (711.4924 without restraints) Performing minimization step: 1621. Total energy = 711.0390 kcal/mol (710.9783 without restraints) Performing minimization step: 1622. Total energy = 710.5258 kcal/mol (710.4652 without restraints) Performing minimization step: 1623. Total energy = 710.0134 kcal/mol (709.9530 without restraints) Performing minimization step: 1624. Total energy = 709.5020 kcal/mol (709.4417 without restraints) Performing minimization step: 1625. Total energy = 708.9915 kcal/mol (708.9313 without restraints) Performing minimization step: 1626. Total energy = 708.4818 kcal/mol (708.4218 without restraints) Performing minimization step: 1627. Total energy = 707.9731 kcal/mol (707.9132 without restraints) Performing minimization step: 1628. Total energy = 707.4654 kcal/mol (707.4055 without restraints) Performing minimization step: 1629. Total energy = 706.9584 kcal/mol (706.8986 without restraints) Performing minimization step: 1630. Total energy = 706.4524 kcal/mol (706.3927 without restraints) Performing minimization step: 1631. Total energy = 705.9473 kcal/mol (705.8877 without restraints) Performing minimization step: 1632. Total energy = 705.4431 kcal/mol (705.3837 without restraints) Performing minimization step: 1633. Total energy = 704.9398 kcal/mol (704.8804 without restraints) Performing minimization step: 1634. Total energy = 704.4374 kcal/mol (704.3782 without restraints) Performing minimization step: 1635. Total energy = 703.9358 kcal/mol (703.8767 without restraints) Performing minimization step: 1636. Total energy = 703.4352 kcal/mol (703.3762 without restraints) Performing minimization step: 1637. Total energy = 702.9356 kcal/mol (702.8766 without restraints) Performing minimization step: 1638. Total energy = 702.4367 kcal/mol (702.3779 without restraints) Performing minimization step: 1639. Total energy = 701.9388 kcal/mol (701.8801 without restraints) Performing minimization step: 1640. Total energy = 701.4417 kcal/mol (701.3831 without restraints) Performing minimization step: 1641. Total energy = 700.9456 kcal/mol (700.8871 without restraints) Performing minimization step: 1642. Total energy = 700.4503 kcal/mol (700.3919 without restraints) Performing minimization step: 1643. Total energy = 699.9560 kcal/mol (699.8977 without restraints) Performing minimization step: 1644. Total energy = 699.4626 kcal/mol (699.4044 without restraints) Performing minimization step: 1645. Total energy = 698.9700 kcal/mol (698.9119 without restraints) Performing minimization step: 1646. Total energy = 698.4783 kcal/mol (698.4204 without restraints) Performing minimization step: 1647. Total energy = 697.9878 kcal/mol (697.9299 without restraints) Performing minimization step: 1648. Total energy = 697.4979 kcal/mol (697.4401 without restraints) Performing minimization step: 1649. Total energy = 697.0088 kcal/mol (696.9512 without restraints) Performing minimization step: 1650. Total energy = 696.5207 kcal/mol (696.4632 without restraints) Performing minimization step: 1651. Total energy = 696.0335 kcal/mol (695.9760 without restraints) Performing minimization step: 1652. Total energy = 695.5473 kcal/mol (695.4900 without restraints) Performing minimization step: 1653. Total energy = 695.0618 kcal/mol (695.0046 without restraints) Performing minimization step: 1654. Total energy = 694.5770 kcal/mol (694.5199 without restraints) Performing minimization step: 1655. Total energy = 694.0933 kcal/mol (694.0363 without restraints) Performing minimization step: 1656. Total energy = 693.6103 kcal/mol (693.5533 without restraints) Performing minimization step: 1657. Total energy = 693.1283 kcal/mol (693.0715 without restraints) Performing minimization step: 1658. Total energy = 692.6472 kcal/mol (692.5904 without restraints) Performing minimization step: 1659. Total energy = 692.1670 kcal/mol (692.1103 without restraints) Performing minimization step: 1660. Total energy = 691.6876 kcal/mol (691.6311 without restraints) Performing minimization step: 1661. Total energy = 691.2092 kcal/mol (691.1528 without restraints) Performing minimization step: 1662. Total energy = 690.7316 kcal/mol (690.6753 without restraints) Performing minimization step: 1663. Total energy = 690.2549 kcal/mol (690.1987 without restraints) Performing minimization step: 1664. Total energy = 689.7790 kcal/mol (689.7229 without restraints) Performing minimization step: 1665. Total energy = 689.3041 kcal/mol (689.2481 without restraints) Performing minimization step: 1666. Total energy = 688.8300 kcal/mol (688.7741 without restraints) Performing minimization step: 1667. Total energy = 688.3568 kcal/mol (688.3009 without restraints) Performing minimization step: 1668. Total energy = 687.8844 kcal/mol (687.8287 without restraints) Performing minimization step: 1669. Total energy = 687.4129 kcal/mol (687.3573 without restraints) Performing minimization step: 1670. Total energy = 686.9421 kcal/mol (686.8866 without restraints) Performing minimization step: 1671. Total energy = 686.4723 kcal/mol (686.4169 without restraints) Performing minimization step: 1672. Total energy = 686.0034 kcal/mol (685.9481 without restraints) Performing minimization step: 1673. Total energy = 685.5354 kcal/mol (685.4802 without restraints) Performing minimization step: 1674. Total energy = 685.0682 kcal/mol (685.0131 without restraints) Performing minimization step: 1675. Total energy = 684.6019 kcal/mol (684.5469 without restraints) Performing minimization step: 1676. Total energy = 684.1364 kcal/mol (684.0816 without restraints) Performing minimization step: 1677. Total energy = 683.6718 kcal/mol (683.6171 without restraints) Performing minimization step: 1678. Total energy = 683.2081 kcal/mol (683.1534 without restraints) Performing minimization step: 1679. Total energy = 682.7452 kcal/mol (682.6906 without restraints) Performing minimization step: 1680. Total energy = 682.2832 kcal/mol (682.2287 without restraints) Performing minimization step: 1681. Total energy = 681.8220 kcal/mol (681.7676 without restraints) Performing minimization step: 1682. Total energy = 681.3617 kcal/mol (681.3074 without restraints) Performing minimization step: 1683. Total energy = 680.9022 kcal/mol (680.8480 without restraints) Performing minimization step: 1684. Total energy = 680.4436 kcal/mol (680.3895 without restraints) Performing minimization step: 1685. Total energy = 679.9858 kcal/mol (679.9318 without restraints) Performing minimization step: 1686. Total energy = 679.5289 kcal/mol (679.4750 without restraints) Performing minimization step: 1687. Total energy = 679.0728 kcal/mol (679.0191 without restraints) Performing minimization step: 1688. Total energy = 678.6178 kcal/mol (678.5642 without restraints) Performing minimization step: 1689. Total energy = 678.1635 kcal/mol (678.1099 without restraints) Performing minimization step: 1690. Total energy = 677.7099 kcal/mol (677.6565 without restraints) Performing minimization step: 1691. Total energy = 677.2573 kcal/mol (677.2039 without restraints) Performing minimization step: 1692. Total energy = 676.8054 kcal/mol (676.7521 without restraints) Performing minimization step: 1693. Total energy = 676.3544 kcal/mol (676.3013 without restraints) Performing minimization step: 1694. Total energy = 675.9043 kcal/mol (675.8512 without restraints) Performing minimization step: 1695. Total energy = 675.4547 kcal/mol (675.4017 without restraints) Performing minimization step: 1696. Total energy = 675.0062 kcal/mol (674.9532 without restraints) Performing minimization step: 1697. Total energy = 674.5584 kcal/mol (674.5057 without restraints) Performing minimization step: 1698. Total energy = 674.1116 kcal/mol (674.0590 without restraints) Performing minimization step: 1699. Total energy = 673.6657 kcal/mol (673.6131 without restraints) Performing minimization step: 1700. Total energy = 673.2206 kcal/mol (673.1681 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 672.7763 kcal/mol (672.7239 without restraints) Performing minimization step: 1702. Total energy = 672.3328 kcal/mol (672.2806 without restraints) Performing minimization step: 1703. Total energy = 671.8902 kcal/mol (671.8380 without restraints) Performing minimization step: 1704. Total energy = 671.4484 kcal/mol (671.3963 without restraints) Performing minimization step: 1705. Total energy = 671.0075 kcal/mol (670.9555 without restraints) Performing minimization step: 1706. Total energy = 670.5673 kcal/mol (670.5154 without restraints) Performing minimization step: 1707. Total energy = 670.1280 kcal/mol (670.0762 without restraints) Performing minimization step: 1708. Total energy = 669.6895 kcal/mol (669.6378 without restraints) Performing minimization step: 1709. Total energy = 669.2519 kcal/mol (669.2003 without restraints) Performing minimization step: 1710. Total energy = 668.8150 kcal/mol (668.7635 without restraints) Performing minimization step: 1711. Total energy = 668.3790 kcal/mol (668.3276 without restraints) Performing minimization step: 1712. Total energy = 667.9438 kcal/mol (667.8925 without restraints) Performing minimization step: 1713. Total energy = 667.5095 kcal/mol (667.4583 without restraints) Performing minimization step: 1714. Total energy = 667.0759 kcal/mol (667.0248 without restraints) Performing minimization step: 1715. Total energy = 666.6432 kcal/mol (666.5922 without restraints) Performing minimization step: 1716. Total energy = 666.2113 kcal/mol (666.1604 without restraints) Performing minimization step: 1717. Total energy = 665.7802 kcal/mol (665.7294 without restraints) Performing minimization step: 1718. Total energy = 665.3500 kcal/mol (665.2992 without restraints) Performing minimization step: 1719. Total energy = 664.9205 kcal/mol (664.8699 without restraints) Performing minimization step: 1720. Total energy = 664.4919 kcal/mol (664.4413 without restraints) Performing minimization step: 1721. Total energy = 664.0641 kcal/mol (664.0136 without restraints) Performing minimization step: 1722. Total energy = 663.6370 kcal/mol (663.5867 without restraints) Performing minimization step: 1723. Total energy = 663.2108 kcal/mol (663.1606 without restraints) Performing minimization step: 1724. Total energy = 662.7854 kcal/mol (662.7353 without restraints) Performing minimization step: 1725. Total energy = 662.3608 kcal/mol (662.3108 without restraints) Performing minimization step: 1726. Total energy = 661.9370 kcal/mol (661.8871 without restraints) Performing minimization step: 1727. Total energy = 661.5141 kcal/mol (661.4642 without restraints) Performing minimization step: 1728. Total energy = 661.0919 kcal/mol (661.0421 without restraints) Performing minimization step: 1729. Total energy = 660.6705 kcal/mol (660.6208 without restraints) Performing minimization step: 1730. Total energy = 660.2500 kcal/mol (660.2004 without restraints) Performing minimization step: 1731. Total energy = 659.8302 kcal/mol (659.7807 without restraints) Performing minimization step: 1732. Total energy = 659.4112 kcal/mol (659.3618 without restraints) Performing minimization step: 1733. Total energy = 658.9931 kcal/mol (658.9438 without restraints) Performing minimization step: 1734. Total energy = 658.5757 kcal/mol (658.5265 without restraints) Performing minimization step: 1735. Total energy = 658.1591 kcal/mol (658.1100 without restraints) Performing minimization step: 1736. Total energy = 657.7434 kcal/mol (657.6943 without restraints) Performing minimization step: 1737. Total energy = 657.3284 kcal/mol (657.2794 without restraints) Performing minimization step: 1738. Total energy = 656.9144 kcal/mol (656.8656 without restraints) Performing minimization step: 1739. Total energy = 656.5011 kcal/mol (656.4523 without restraints) Performing minimization step: 1740. Total energy = 656.0885 kcal/mol (656.0398 without restraints) Performing minimization step: 1741. Total energy = 655.6766 kcal/mol (655.6281 without restraints) Performing minimization step: 1742. Total energy = 655.2656 kcal/mol (655.2172 without restraints) Performing minimization step: 1743. Total energy = 654.8554 kcal/mol (654.8070 without restraints) Performing minimization step: 1744. Total energy = 654.4459 kcal/mol (654.3977 without restraints) Performing minimization step: 1745. Total energy = 654.0373 kcal/mol (653.9891 without restraints) Performing minimization step: 1746. Total energy = 653.6294 kcal/mol (653.5813 without restraints) Performing minimization step: 1747. Total energy = 653.2222 kcal/mol (653.1742 without restraints) Performing minimization step: 1748. Total energy = 652.8158 kcal/mol (652.7679 without restraints) Performing minimization step: 1749. Total energy = 652.4103 kcal/mol (652.3625 without restraints) Performing minimization step: 1750. Total energy = 652.0056 kcal/mol (651.9578 without restraints) Performing minimization step: 1751. Total energy = 651.6016 kcal/mol (651.5540 without restraints) Performing minimization step: 1752. Total energy = 651.1984 kcal/mol (651.1509 without restraints) Performing minimization step: 1753. Total energy = 650.7960 kcal/mol (650.7485 without restraints) Performing minimization step: 1754. Total energy = 650.3944 kcal/mol (650.3470 without restraints) Performing minimization step: 1755. Total energy = 649.9937 kcal/mol (649.9464 without restraints) Performing minimization step: 1756. Total energy = 649.5936 kcal/mol (649.5464 without restraints) Performing minimization step: 1757. Total energy = 649.1944 kcal/mol (649.1474 without restraints) Performing minimization step: 1758. Total energy = 648.7959 kcal/mol (648.7489 without restraints) Performing minimization step: 1759. Total energy = 648.3981 kcal/mol (648.3512 without restraints) Performing minimization step: 1760. Total energy = 648.0011 kcal/mol (647.9543 without restraints) Performing minimization step: 1761. Total energy = 647.6049 kcal/mol (647.5581 without restraints) Performing minimization step: 1762. Total energy = 647.2094 kcal/mol (647.1627 without restraints) Performing minimization step: 1763. Total energy = 646.8147 kcal/mol (646.7681 without restraints) Performing minimization step: 1764. Total energy = 646.4207 kcal/mol (646.3743 without restraints) Performing minimization step: 1765. Total energy = 646.0275 kcal/mol (645.9812 without restraints) Performing minimization step: 1766. Total energy = 645.6351 kcal/mol (645.5888 without restraints) Performing minimization step: 1767. Total energy = 645.2433 kcal/mol (645.1970 without restraints) Performing minimization step: 1768. Total energy = 644.8523 kcal/mol (644.8062 without restraints) Performing minimization step: 1769. Total energy = 644.4621 kcal/mol (644.4161 without restraints) Performing minimization step: 1770. Total energy = 644.0728 kcal/mol (644.0268 without restraints) Performing minimization step: 1771. Total energy = 643.6841 kcal/mol (643.6383 without restraints) Performing minimization step: 1772. Total energy = 643.2962 kcal/mol (643.2505 without restraints) Performing minimization step: 1773. Total energy = 642.9091 kcal/mol (642.8634 without restraints) Performing minimization step: 1774. Total energy = 642.5227 kcal/mol (642.4772 without restraints) Performing minimization step: 1775. Total energy = 642.1373 kcal/mol (642.0918 without restraints) Performing minimization step: 1776. Total energy = 641.7524 kcal/mol (641.7071 without restraints) Performing minimization step: 1777. Total energy = 641.3683 kcal/mol (641.3230 without restraints) Performing minimization step: 1778. Total energy = 640.9849 kcal/mol (640.9397 without restraints) Performing minimization step: 1779. Total energy = 640.6022 kcal/mol (640.5571 without restraints) Performing minimization step: 1780. Total energy = 640.2203 kcal/mol (640.1753 without restraints) Performing minimization step: 1781. Total energy = 639.8392 kcal/mol (639.7942 without restraints) Performing minimization step: 1782. Total energy = 639.4587 kcal/mol (639.4139 without restraints) Performing minimization step: 1783. Total energy = 639.0791 kcal/mol (639.0343 without restraints) Performing minimization step: 1784. Total energy = 638.7002 kcal/mol (638.6555 without restraints) Performing minimization step: 1785. Total energy = 638.3220 kcal/mol (638.2774 without restraints) Performing minimization step: 1786. Total energy = 637.9446 kcal/mol (637.9000 without restraints) Performing minimization step: 1787. Total energy = 637.5678 kcal/mol (637.5234 without restraints) Performing minimization step: 1788. Total energy = 637.1919 kcal/mol (637.1475 without restraints) Performing minimization step: 1789. Total energy = 636.8166 kcal/mol (636.7724 without restraints) Performing minimization step: 1790. Total energy = 636.4421 kcal/mol (636.3979 without restraints) Performing minimization step: 1791. Total energy = 636.0683 kcal/mol (636.0242 without restraints) Performing minimization step: 1792. Total energy = 635.6952 kcal/mol (635.6512 without restraints) Performing minimization step: 1793. Total energy = 635.3229 kcal/mol (635.2790 without restraints) Performing minimization step: 1794. Total energy = 634.9513 kcal/mol (634.9075 without restraints) Performing minimization step: 1795. Total energy = 634.5804 kcal/mol (634.5367 without restraints) Performing minimization step: 1796. Total energy = 634.2103 kcal/mol (634.1666 without restraints) Performing minimization step: 1797. Total energy = 633.8408 kcal/mol (633.7973 without restraints) Performing minimization step: 1798. Total energy = 633.4722 kcal/mol (633.4287 without restraints) Performing minimization step: 1799. Total energy = 633.1042 kcal/mol (633.0608 without restraints) Performing minimization step: 1800. Total energy = 632.7369 kcal/mol (632.6936 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 632.3704 kcal/mol (632.3272 without restraints) Performing minimization step: 1802. Total energy = 632.0046 kcal/mol (631.9614 without restraints) Performing minimization step: 1803. Total energy = 631.6395 kcal/mol (631.5964 without restraints) Performing minimization step: 1804. Total energy = 631.2751 kcal/mol (631.2321 without restraints) Performing minimization step: 1805. Total energy = 630.9114 kcal/mol (630.8685 without restraints) Performing minimization step: 1806. Total energy = 630.5484 kcal/mol (630.5056 without restraints) Performing minimization step: 1807. Total energy = 630.1862 kcal/mol (630.1434 without restraints) Performing minimization step: 1808. Total energy = 629.8247 kcal/mol (629.7820 without restraints) Performing minimization step: 1809. Total energy = 629.4642 kcal/mol (629.4217 without restraints) Performing minimization step: 1810. Total energy = 629.1041 kcal/mol (629.0616 without restraints) Performing minimization step: 1811. Total energy = 628.7447 kcal/mol (628.7023 without restraints) Performing minimization step: 1812. Total energy = 628.3860 kcal/mol (628.3437 without restraints) Performing minimization step: 1813. Total energy = 628.0280 kcal/mol (627.9858 without restraints) Performing minimization step: 1814. Total energy = 627.6707 kcal/mol (627.6286 without restraints) Performing minimization step: 1815. Total energy = 627.3141 kcal/mol (627.2721 without restraints) Performing minimization step: 1816. Total energy = 626.9582 kcal/mol (626.9162 without restraints) Performing minimization step: 1817. Total energy = 626.6030 kcal/mol (626.5611 without restraints) Performing minimization step: 1818. Total energy = 626.2485 kcal/mol (626.2067 without restraints) Performing minimization step: 1819. Total energy = 625.8947 kcal/mol (625.8529 without restraints) Performing minimization step: 1820. Total energy = 625.5415 kcal/mol (625.4999 without restraints) Performing minimization step: 1821. Total energy = 625.1891 kcal/mol (625.1476 without restraints) Performing minimization step: 1822. Total energy = 624.8376 kcal/mol (624.7962 without restraints) Performing minimization step: 1823. Total energy = 624.4866 kcal/mol (624.4452 without restraints) Performing minimization step: 1824. Total energy = 624.1362 kcal/mol (624.0949 without restraints) Performing minimization step: 1825. Total energy = 623.7866 kcal/mol (623.7454 without restraints) Performing minimization step: 1826. Total energy = 623.4376 kcal/mol (623.3965 without restraints) Performing minimization step: 1827. Total energy = 623.0893 kcal/mol (623.0482 without restraints) Performing minimization step: 1828. Total energy = 622.7417 kcal/mol (622.7007 without restraints) Performing minimization step: 1829. Total energy = 622.3948 kcal/mol (622.3539 without restraints) Performing minimization step: 1830. Total energy = 622.0486 kcal/mol (622.0077 without restraints) Performing minimization step: 1831. Total energy = 621.7030 kcal/mol (621.6623 without restraints) Performing minimization step: 1832. Total energy = 621.3582 kcal/mol (621.3175 without restraints) Performing minimization step: 1833. Total energy = 621.0140 kcal/mol (620.9734 without restraints) Performing minimization step: 1834. Total energy = 620.6705 kcal/mol (620.6300 without restraints) Performing minimization step: 1835. Total energy = 620.3276 kcal/mol (620.2872 without restraints) Performing minimization step: 1836. Total energy = 619.9855 kcal/mol (619.9451 without restraints) Performing minimization step: 1837. Total energy = 619.6440 kcal/mol (619.6037 without restraints) Performing minimization step: 1838. Total energy = 619.3032 kcal/mol (619.2630 without restraints) Performing minimization step: 1839. Total energy = 618.9630 kcal/mol (618.9229 without restraints) Performing minimization step: 1840. Total energy = 618.6236 kcal/mol (618.5835 without restraints) Performing minimization step: 1841. Total energy = 618.2847 kcal/mol (618.2448 without restraints) Performing minimization step: 1842. Total energy = 617.9466 kcal/mol (617.9067 without restraints) Performing minimization step: 1843. Total energy = 617.6091 kcal/mol (617.5693 without restraints) Performing minimization step: 1844. Total energy = 617.2723 kcal/mol (617.2326 without restraints) Performing minimization step: 1845. Total energy = 616.9361 kcal/mol (616.8965 without restraints) Performing minimization step: 1846. Total energy = 616.6007 kcal/mol (616.5611 without restraints) Performing minimization step: 1847. Total energy = 616.2658 kcal/mol (616.2264 without restraints) Performing minimization step: 1848. Total energy = 615.9317 kcal/mol (615.8923 without restraints) Performing minimization step: 1849. Total energy = 615.5982 kcal/mol (615.5588 without restraints) Performing minimization step: 1850. Total energy = 615.2653 kcal/mol (615.2261 without restraints) Performing minimization step: 1851. Total energy = 614.9331 kcal/mol (614.8939 without restraints) Performing minimization step: 1852. Total energy = 614.6016 kcal/mol (614.5625 without restraints) Performing minimization step: 1853. Total energy = 614.2707 kcal/mol (614.2317 without restraints) Performing minimization step: 1854. Total energy = 613.9404 kcal/mol (613.9015 without restraints) Performing minimization step: 1855. Total energy = 613.6109 kcal/mol (613.5720 without restraints) Performing minimization step: 1856. Total energy = 613.2819 kcal/mol (613.2431 without restraints) Performing minimization step: 1857. Total energy = 612.9536 kcal/mol (612.9149 without restraints) Performing minimization step: 1858. Total energy = 612.6260 kcal/mol (612.5873 without restraints) Performing minimization step: 1859. Total energy = 612.2990 kcal/mol (612.2604 without restraints) Performing minimization step: 1860. Total energy = 611.9726 kcal/mol (611.9341 without restraints) Performing minimization step: 1861. Total energy = 611.6469 kcal/mol (611.6085 without restraints) Performing minimization step: 1862. Total energy = 611.3218 kcal/mol (611.2835 without restraints) Performing minimization step: 1863. Total energy = 610.9974 kcal/mol (610.9591 without restraints) Performing minimization step: 1864. Total energy = 610.6736 kcal/mol (610.6354 without restraints) Performing minimization step: 1865. Total energy = 610.3505 kcal/mol (610.3124 without restraints) Performing minimization step: 1866. Total energy = 610.0279 kcal/mol (609.9899 without restraints) Performing minimization step: 1867. Total energy = 609.7061 kcal/mol (609.6681 without restraints) Performing minimization step: 1868. Total energy = 609.3848 kcal/mol (609.3470 without restraints) Performing minimization step: 1869. Total energy = 609.0642 kcal/mol (609.0264 without restraints) Performing minimization step: 1870. Total energy = 608.7443 kcal/mol (608.7065 without restraints) Performing minimization step: 1871. Total energy = 608.4249 kcal/mol (608.3873 without restraints) Performing minimization step: 1872. Total energy = 608.1062 kcal/mol (608.0686 without restraints) Performing minimization step: 1873. Total energy = 607.7884 kcal/mol (607.7508 without restraints) Performing minimization step: 1874. Total energy = 607.4709 kcal/mol (607.4335 without restraints) Performing minimization step: 1875. Total energy = 607.1541 kcal/mol (607.1167 without restraints) Performing minimization step: 1876. Total energy = 606.8379 kcal/mol (606.8006 without restraints) Performing minimization step: 1877. Total energy = 606.5224 kcal/mol (606.4852 without restraints) Performing minimization step: 1878. Total energy = 606.2075 kcal/mol (606.1703 without restraints) Performing minimization step: 1879. Total energy = 605.8931 kcal/mol (605.8561 without restraints) Performing minimization step: 1880. Total energy = 605.5794 kcal/mol (605.5424 without restraints) Performing minimization step: 1881. Total energy = 605.2663 kcal/mol (605.2294 without restraints) Performing minimization step: 1882. Total energy = 604.9538 kcal/mol (604.9170 without restraints) Performing minimization step: 1883. Total energy = 604.6420 kcal/mol (604.6052 without restraints) Performing minimization step: 1884. Total energy = 604.3307 kcal/mol (604.2940 without restraints) Performing minimization step: 1885. Total energy = 604.0201 kcal/mol (603.9834 without restraints) Performing minimization step: 1886. Total energy = 603.7101 kcal/mol (603.6735 without restraints) Performing minimization step: 1887. Total energy = 603.4006 kcal/mol (603.3641 without restraints) Performing minimization step: 1888. Total energy = 603.0918 kcal/mol (603.0554 without restraints) Performing minimization step: 1889. Total energy = 602.7833 kcal/mol (602.7470 without restraints) Performing minimization step: 1890. Total energy = 602.4757 kcal/mol (602.4395 without restraints) Performing minimization step: 1891. Total energy = 602.1688 kcal/mol (602.1326 without restraints) Performing minimization step: 1892. Total energy = 601.8623 kcal/mol (601.8262 without restraints) Performing minimization step: 1893. Total energy = 601.5565 kcal/mol (601.5205 without restraints) Performing minimization step: 1894. Total energy = 601.2513 kcal/mol (601.2154 without restraints) Performing minimization step: 1895. Total energy = 600.9468 kcal/mol (600.9108 without restraints) Performing minimization step: 1896. Total energy = 600.6428 kcal/mol (600.6069 without restraints) Performing minimization step: 1897. Total energy = 600.3394 kcal/mol (600.3036 without restraints) Performing minimization step: 1898. Total energy = 600.0366 kcal/mol (600.0009 without restraints) Performing minimization step: 1899. Total energy = 599.7344 kcal/mol (599.6988 without restraints) Performing minimization step: 1900. Total energy = 599.4328 kcal/mol (599.3972 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 599.1318 kcal/mol (599.0963 without restraints) Performing minimization step: 1902. Total energy = 598.8314 kcal/mol (598.7960 without restraints) Performing minimization step: 1903. Total energy = 598.5319 kcal/mol (598.4966 without restraints) Performing minimization step: 1904. Total energy = 598.2327 kcal/mol (598.1974 without restraints) Performing minimization step: 1905. Total energy = 597.9343 kcal/mol (597.8991 without restraints) Performing minimization step: 1906. Total energy = 597.6362 kcal/mol (597.6011 without restraints) Performing minimization step: 1907. Total energy = 597.3388 kcal/mol (597.3037 without restraints) Performing minimization step: 1908. Total energy = 597.0419 kcal/mol (597.0069 without restraints) Performing minimization step: 1909. Total energy = 596.7456 kcal/mol (596.7106 without restraints) Performing minimization step: 1910. Total energy = 596.4499 kcal/mol (596.4152 without restraints) Performing minimization step: 1911. Total energy = 596.1547 kcal/mol (596.1199 without restraints) Performing minimization step: 1912. Total energy = 595.8601 kcal/mol (595.8254 without restraints) Performing minimization step: 1913. Total energy = 595.5660 kcal/mol (595.5312 without restraints) Performing minimization step: 1914. Total energy = 595.2725 kcal/mol (595.2379 without restraints) Performing minimization step: 1915. Total energy = 594.9797 kcal/mol (594.9452 without restraints) Performing minimization step: 1916. Total energy = 594.6874 kcal/mol (594.6530 without restraints) Performing minimization step: 1917. Total energy = 594.3957 kcal/mol (594.3613 without restraints) Performing minimization step: 1918. Total energy = 594.1046 kcal/mol (594.0703 without restraints) Performing minimization step: 1919. Total energy = 593.8140 kcal/mol (593.7798 without restraints) Performing minimization step: 1920. Total energy = 593.5241 kcal/mol (593.4899 without restraints) Performing minimization step: 1921. Total energy = 593.2346 kcal/mol (593.2005 without restraints) Performing minimization step: 1922. Total energy = 592.9458 kcal/mol (592.9118 without restraints) Performing minimization step: 1923. Total energy = 592.6576 kcal/mol (592.6236 without restraints) Performing minimization step: 1924. Total energy = 592.3698 kcal/mol (592.3359 without restraints) Performing minimization step: 1925. Total energy = 592.0827 kcal/mol (592.0488 without restraints) Performing minimization step: 1926. Total energy = 591.7961 kcal/mol (591.7623 without restraints) Performing minimization step: 1927. Total energy = 591.5101 kcal/mol (591.4764 without restraints) Performing minimization step: 1928. Total energy = 591.2246 kcal/mol (591.1909 without restraints) Performing minimization step: 1929. Total energy = 590.9397 kcal/mol (590.9061 without restraints) Performing minimization step: 1930. Total energy = 590.6554 kcal/mol (590.6218 without restraints) Performing minimization step: 1931. Total energy = 590.3716 kcal/mol (590.3381 without restraints) Performing minimization step: 1932. Total energy = 590.0883 kcal/mol (590.0549 without restraints) Performing minimization step: 1933. Total energy = 589.8056 kcal/mol (589.7723 without restraints) Performing minimization step: 1934. Total energy = 589.5235 kcal/mol (589.4902 without restraints) Performing minimization step: 1935. Total energy = 589.2419 kcal/mol (589.2087 without restraints) Performing minimization step: 1936. Total energy = 588.9609 kcal/mol (588.9277 without restraints) Performing minimization step: 1937. Total energy = 588.6804 kcal/mol (588.6473 without restraints) Performing minimization step: 1938. Total energy = 588.4004 kcal/mol (588.3674 without restraints) Performing minimization step: 1939. Total energy = 588.1212 kcal/mol (588.0883 without restraints) Performing minimization step: 1940. Total energy = 587.8424 kcal/mol (587.8095 without restraints) Performing minimization step: 1941. Total energy = 587.5641 kcal/mol (587.5313 without restraints) Performing minimization step: 1942. Total energy = 587.2863 kcal/mol (587.2536 without restraints) Performing minimization step: 1943. Total energy = 587.0091 kcal/mol (586.9764 without restraints) Performing minimization step: 1944. Total energy = 586.7324 kcal/mol (586.6997 without restraints) Performing minimization step: 1945. Total energy = 586.4562 kcal/mol (586.4237 without restraints) Performing minimization step: 1946. Total energy = 586.1806 kcal/mol (586.1481 without restraints) Performing minimization step: 1947. Total energy = 585.9056 kcal/mol (585.8732 without restraints) Performing minimization step: 1948. Total energy = 585.6311 kcal/mol (585.5987 without restraints) Performing minimization step: 1949. Total energy = 585.3570 kcal/mol (585.3247 without restraints) Performing minimization step: 1950. Total energy = 585.0836 kcal/mol (585.0513 without restraints) Performing minimization step: 1951. Total energy = 584.8106 kcal/mol (584.7785 without restraints) Performing minimization step: 1952. Total energy = 584.5382 kcal/mol (584.5061 without restraints) Performing minimization step: 1953. Total energy = 584.2664 kcal/mol (584.2343 without restraints) Performing minimization step: 1954. Total energy = 583.9948 kcal/mol (583.9628 without restraints) Performing minimization step: 1955. Total energy = 583.7240 kcal/mol (583.6921 without restraints) Performing minimization step: 1956. Total energy = 583.4537 kcal/mol (583.4218 without restraints) Performing minimization step: 1957. Total energy = 583.1840 kcal/mol (583.1521 without restraints) Performing minimization step: 1958. Total energy = 582.9147 kcal/mol (582.8830 without restraints) Performing minimization step: 1959. Total energy = 582.6460 kcal/mol (582.6143 without restraints) Performing minimization step: 1960. Total energy = 582.3778 kcal/mol (582.3461 without restraints) Performing minimization step: 1961. Total energy = 582.1101 kcal/mol (582.0785 without restraints) Performing minimization step: 1962. Total energy = 581.8427 kcal/mol (581.8112 without restraints) Performing minimization step: 1963. Total energy = 581.5761 kcal/mol (581.5446 without restraints) Performing minimization step: 1964. Total energy = 581.3099 kcal/mol (581.2785 without restraints) Performing minimization step: 1965. Total energy = 581.0441 kcal/mol (581.0128 without restraints) Performing minimization step: 1966. Total energy = 580.7790 kcal/mol (580.7477 without restraints) Performing minimization step: 1967. Total energy = 580.5144 kcal/mol (580.4832 without restraints) Performing minimization step: 1968. Total energy = 580.2503 kcal/mol (580.2191 without restraints) Performing minimization step: 1969. Total energy = 579.9867 kcal/mol (579.9556 without restraints) Performing minimization step: 1970. Total energy = 579.7236 kcal/mol (579.6926 without restraints) Performing minimization step: 1971. Total energy = 579.4611 kcal/mol (579.4301 without restraints) Performing minimization step: 1972. Total energy = 579.1990 kcal/mol (579.1681 without restraints) Performing minimization step: 1973. Total energy = 578.9375 kcal/mol (578.9066 without restraints) Performing minimization step: 1974. Total energy = 578.6764 kcal/mol (578.6456 without restraints) Performing minimization step: 1975. Total energy = 578.4159 kcal/mol (578.3852 without restraints) Performing minimization step: 1976. Total energy = 578.1558 kcal/mol (578.1252 without restraints) Performing minimization step: 1977. Total energy = 577.8961 kcal/mol (577.8655 without restraints) Performing minimization step: 1978. Total energy = 577.6371 kcal/mol (577.6065 without restraints) Performing minimization step: 1979. Total energy = 577.3785 kcal/mol (577.3481 without restraints) Performing minimization step: 1980. Total energy = 577.1204 kcal/mol (577.0899 without restraints) Performing minimization step: 1981. Total energy = 576.8628 kcal/mol (576.8324 without restraints) Performing minimization step: 1982. Total energy = 576.6058 kcal/mol (576.5754 without restraints) Performing minimization step: 1983. Total energy = 576.3492 kcal/mol (576.3189 without restraints) Performing minimization step: 1984. Total energy = 576.0931 kcal/mol (576.0629 without restraints) Performing minimization step: 1985. Total energy = 575.8372 kcal/mol (575.8070 without restraints) Performing minimization step: 1986. Total energy = 575.5821 kcal/mol (575.5520 without restraints) Performing minimization step: 1987. Total energy = 575.3275 kcal/mol (575.2975 without restraints) Performing minimization step: 1988. Total energy = 575.0734 kcal/mol (575.0434 without restraints) Performing minimization step: 1989. Total energy = 574.8198 kcal/mol (574.7899 without restraints) Performing minimization step: 1990. Total energy = 574.5667 kcal/mol (574.5368 without restraints) Performing minimization step: 1991. Total energy = 574.3140 kcal/mol (574.2842 without restraints) Performing minimization step: 1992. Total energy = 574.0619 kcal/mol (574.0321 without restraints) Performing minimization step: 1993. Total energy = 573.8102 kcal/mol (573.7805 without restraints) Performing minimization step: 1994. Total energy = 573.5589 kcal/mol (573.5292 without restraints) Performing minimization step: 1995. Total energy = 573.3084 kcal/mol (573.2789 without restraints) Performing minimization step: 1996. Total energy = 573.0581 kcal/mol (573.0284 without restraints) Performing minimization step: 1997. Total energy = 572.8081 kcal/mol (572.7787 without restraints) Performing minimization step: 1998. Total energy = 572.5589 kcal/mol (572.5295 without restraints) Performing minimization step: 1999. Total energy = 572.3096 kcal/mol (572.2803 without restraints) Performing minimization step: 2000. Total energy = 572.0613 kcal/mol (572.0320 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 571.8134 kcal/mol (571.7842 without restraints) Performing minimization step: 2002. Total energy = 571.5660 kcal/mol (571.5369 without restraints) Performing minimization step: 2003. Total energy = 571.3191 kcal/mol (571.2900 without restraints) Performing minimization step: 2004. Total energy = 571.0729 kcal/mol (571.0438 without restraints) Performing minimization step: 2005. Total energy = 570.8269 kcal/mol (570.7979 without restraints) Performing minimization step: 2006. Total energy = 570.5814 kcal/mol (570.5525 without restraints) Performing minimization step: 2007. Total energy = 570.3364 kcal/mol (570.3075 without restraints) Performing minimization step: 2008. Total energy = 570.0918 kcal/mol (570.0630 without restraints) Performing minimization step: 2009. Total energy = 569.8477 kcal/mol (569.8189 without restraints) Performing minimization step: 2010. Total energy = 569.6041 kcal/mol (569.5753 without restraints) Performing minimization step: 2011. Total energy = 569.3609 kcal/mol (569.3322 without restraints) Performing minimization step: 2012. Total energy = 569.1181 kcal/mol (569.0895 without restraints) Performing minimization step: 2013. Total energy = 568.8759 kcal/mol (568.8473 without restraints) Performing minimization step: 2014. Total energy = 568.6341 kcal/mol (568.6056 without restraints) Performing minimization step: 2015. Total energy = 568.3928 kcal/mol (568.3643 without restraints) Performing minimization step: 2016. Total energy = 568.1519 kcal/mol (568.1235 without restraints) Performing minimization step: 2017. Total energy = 567.9115 kcal/mol (567.8831 without restraints) Performing minimization step: 2018. Total energy = 567.6715 kcal/mol (567.6432 without restraints) Performing minimization step: 2019. Total energy = 567.4320 kcal/mol (567.4037 without restraints) Performing minimization step: 2020. Total energy = 567.1929 kcal/mol (567.1647 without restraints) Performing minimization step: 2021. Total energy = 566.9543 kcal/mol (566.9261 without restraints) Performing minimization step: 2022. Total energy = 566.7161 kcal/mol (566.6880 without restraints) Performing minimization step: 2023. Total energy = 566.4784 kcal/mol (566.4503 without restraints) Performing minimization step: 2024. Total energy = 566.2411 kcal/mol (566.2131 without restraints) Performing minimization step: 2025. Total energy = 566.0043 kcal/mol (565.9764 without restraints) Performing minimization step: 2026. Total energy = 565.7679 kcal/mol (565.7400 without restraints) Performing minimization step: 2027. Total energy = 565.5320 kcal/mol (565.5042 without restraints) Performing minimization step: 2028. Total energy = 565.2965 kcal/mol (565.2687 without restraints) Performing minimization step: 2029. Total energy = 565.0614 kcal/mol (565.0337 without restraints) Performing minimization step: 2030. Total energy = 564.8268 kcal/mol (564.7992 without restraints) Performing minimization step: 2031. Total energy = 564.5927 kcal/mol (564.5651 without restraints) Performing minimization step: 2032. Total energy = 564.3590 kcal/mol (564.3314 without restraints) Performing minimization step: 2033. Total energy = 564.1257 kcal/mol (564.0982 without restraints) Performing minimization step: 2034. Total energy = 563.8929 kcal/mol (563.8654 without restraints) Performing minimization step: 2035. Total energy = 563.6604 kcal/mol (563.6330 without restraints) Performing minimization step: 2036. Total energy = 563.4285 kcal/mol (563.4011 without restraints) Performing minimization step: 2037. Total energy = 563.1972 kcal/mol (563.1699 without restraints) Performing minimization step: 2038. Total energy = 562.9660 kcal/mol (562.9388 without restraints) Performing minimization step: 2039. Total energy = 562.7356 kcal/mol (562.7084 without restraints) Performing minimization step: 2040. Total energy = 562.5054 kcal/mol (562.4782 without restraints) Performing minimization step: 2041. Total energy = 562.2755 kcal/mol (562.2484 without restraints) Performing minimization step: 2042. Total energy = 562.0462 kcal/mol (562.0191 without restraints) Performing minimization step: 2043. Total energy = 561.8172 kcal/mol (561.7902 without restraints) Performing minimization step: 2044. Total energy = 561.5887 kcal/mol (561.5617 without restraints) Performing minimization step: 2045. Total energy = 561.3606 kcal/mol (561.3337 without restraints) Performing minimization step: 2046. Total energy = 561.1329 kcal/mol (561.1061 without restraints) Performing minimization step: 2047. Total energy = 560.9056 kcal/mol (560.8788 without restraints) Performing minimization step: 2048. Total energy = 560.6788 kcal/mol (560.6521 without restraints) Performing minimization step: 2049. Total energy = 560.4524 kcal/mol (560.4257 without restraints) Performing minimization step: 2050. Total energy = 560.2264 kcal/mol (560.1998 without restraints) Performing minimization step: 2051. Total energy = 560.0009 kcal/mol (559.9743 without restraints) Performing minimization step: 2052. Total energy = 559.7757 kcal/mol (559.7492 without restraints) Performing minimization step: 2053. Total energy = 559.5510 kcal/mol (559.5245 without restraints) Performing minimization step: 2054. Total energy = 559.3267 kcal/mol (559.3002 without restraints) Performing minimization step: 2055. Total energy = 559.1028 kcal/mol (559.0764 without restraints) Performing minimization step: 2056. Total energy = 558.8793 kcal/mol (558.8529 without restraints) Performing minimization step: 2057. Total energy = 558.6562 kcal/mol (558.6299 without restraints) Performing minimization step: 2058. Total energy = 558.4336 kcal/mol (558.4073 without restraints) Performing minimization step: 2059. Total energy = 558.2113 kcal/mol (558.1851 without restraints) Performing minimization step: 2060. Total energy = 557.9895 kcal/mol (557.9633 without restraints) Performing minimization step: 2061. Total energy = 557.7680 kcal/mol (557.7419 without restraints) Performing minimization step: 2062. Total energy = 557.5470 kcal/mol (557.5210 without restraints) Performing minimization step: 2063. Total energy = 557.3264 kcal/mol (557.3004 without restraints) Performing minimization step: 2064. Total energy = 557.1062 kcal/mol (557.0802 without restraints) Performing minimization step: 2065. Total energy = 556.8865 kcal/mol (556.8607 without restraints) Performing minimization step: 2066. Total energy = 556.6672 kcal/mol (556.6414 without restraints) Performing minimization step: 2067. Total energy = 556.4482 kcal/mol (556.4224 without restraints) Performing minimization step: 2068. Total energy = 556.2297 kcal/mol (556.2039 without restraints) Performing minimization step: 2069. Total energy = 556.0115 kcal/mol (555.9857 without restraints) Performing minimization step: 2070. Total energy = 555.7937 kcal/mol (555.7680 without restraints) Performing minimization step: 2071. Total energy = 555.5763 kcal/mol (555.5507 without restraints) Performing minimization step: 2072. Total energy = 555.3593 kcal/mol (555.3337 without restraints) Performing minimization step: 2073. Total energy = 555.1427 kcal/mol (555.1172 without restraints) Performing minimization step: 2074. Total energy = 554.9265 kcal/mol (554.9010 without restraints) Performing minimization step: 2075. Total energy = 554.7107 kcal/mol (554.6853 without restraints) Performing minimization step: 2076. Total energy = 554.4954 kcal/mol (554.4700 without restraints) Performing minimization step: 2077. Total energy = 554.2804 kcal/mol (554.2550 without restraints) Performing minimization step: 2078. Total energy = 554.0658 kcal/mol (554.0405 without restraints) Performing minimization step: 2079. Total energy = 553.8516 kcal/mol (553.8263 without restraints) Performing minimization step: 2080. Total energy = 553.6377 kcal/mol (553.6125 without restraints) Performing minimization step: 2081. Total energy = 553.4243 kcal/mol (553.3991 without restraints) Performing minimization step: 2082. Total energy = 553.2112 kcal/mol (553.1861 without restraints) Performing minimization step: 2083. Total energy = 552.9986 kcal/mol (552.9735 without restraints) Performing minimization step: 2084. Total energy = 552.7863 kcal/mol (552.7613 without restraints) Performing minimization step: 2085. Total energy = 552.5744 kcal/mol (552.5494 without restraints) Performing minimization step: 2086. Total energy = 552.3629 kcal/mol (552.3380 without restraints) Performing minimization step: 2087. Total energy = 552.1518 kcal/mol (552.1269 without restraints) Performing minimization step: 2088. Total energy = 551.9410 kcal/mol (551.9162 without restraints) Performing minimization step: 2089. Total energy = 551.7305 kcal/mol (551.7057 without restraints) Performing minimization step: 2090. Total energy = 551.5205 kcal/mol (551.4957 without restraints) Performing minimization step: 2091. Total energy = 551.3109 kcal/mol (551.2862 without restraints) Performing minimization step: 2092. Total energy = 551.1016 kcal/mol (551.0768 without restraints) Performing minimization step: 2093. Total energy = 550.8927 kcal/mol (550.8680 without restraints) Performing minimization step: 2094. Total energy = 550.6842 kcal/mol (550.6596 without restraints) Performing minimization step: 2095. Total energy = 550.4763 kcal/mol (550.4518 without restraints) Performing minimization step: 2096. Total energy = 550.2686 kcal/mol (550.2441 without restraints) Performing minimization step: 2097. Total energy = 550.0613 kcal/mol (550.0369 without restraints) Performing minimization step: 2098. Total energy = 549.8544 kcal/mol (549.8300 without restraints) Performing minimization step: 2099. Total energy = 549.6478 kcal/mol (549.6234 without restraints) Performing minimization step: 2100. Total energy = 549.4416 kcal/mol (549.4173 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 549.2358 kcal/mol (549.2115 without restraints) Performing minimization step: 2102. Total energy = 549.0303 kcal/mol (549.0061 without restraints) Performing minimization step: 2103. Total energy = 548.8254 kcal/mol (548.8012 without restraints) Performing minimization step: 2104. Total energy = 548.6207 kcal/mol (548.5965 without restraints) Performing minimization step: 2105. Total energy = 548.4167 kcal/mol (548.3926 without restraints) Performing minimization step: 2106. Total energy = 548.2127 kcal/mol (548.1886 without restraints) Performing minimization step: 2107. Total energy = 548.0090 kcal/mol (547.9850 without restraints) Performing minimization step: 2108. Total energy = 547.8058 kcal/mol (547.7818 without restraints) Performing minimization step: 2109. Total energy = 547.6029 kcal/mol (547.5789 without restraints) Performing minimization step: 2110. Total energy = 547.4003 kcal/mol (547.3764 without restraints) Performing minimization step: 2111. Total energy = 547.1981 kcal/mol (547.1743 without restraints) Performing minimization step: 2112. Total energy = 546.9963 kcal/mol (546.9725 without restraints) Performing minimization step: 2113. Total energy = 546.7949 kcal/mol (546.7711 without restraints) Performing minimization step: 2114. Total energy = 546.5938 kcal/mol (546.5700 without restraints) Performing minimization step: 2115. Total energy = 546.3930 kcal/mol (546.3693 without restraints) Performing minimization step: 2116. Total energy = 546.1924 kcal/mol (546.1688 without restraints) Performing minimization step: 2117. Total energy = 545.9924 kcal/mol (545.9688 without restraints) Performing minimization step: 2118. Total energy = 545.7927 kcal/mol (545.7691 without restraints) Performing minimization step: 2119. Total energy = 545.5934 kcal/mol (545.5699 without restraints) Performing minimization step: 2120. Total energy = 545.3945 kcal/mol (545.3710 without restraints) Performing minimization step: 2121. Total energy = 545.1958 kcal/mol (545.1724 without restraints) Performing minimization step: 2122. Total energy = 544.9976 kcal/mol (544.9742 without restraints) Performing minimization step: 2123. Total energy = 544.7997 kcal/mol (544.7763 without restraints) Performing minimization step: 2124. Total energy = 544.6021 kcal/mol (544.5788 without restraints) Performing minimization step: 2125. Total energy = 544.4049 kcal/mol (544.3817 without restraints) Performing minimization step: 2126. Total energy = 544.2081 kcal/mol (544.1849 without restraints) Performing minimization step: 2127. Total energy = 544.0116 kcal/mol (543.9884 without restraints) Performing minimization step: 2128. Total energy = 543.8154 kcal/mol (543.7923 without restraints) Performing minimization step: 2129. Total energy = 543.6196 kcal/mol (543.5965 without restraints) Performing minimization step: 2130. Total energy = 543.4241 kcal/mol (543.4010 without restraints) Performing minimization step: 2131. Total energy = 543.2290 kcal/mol (543.2060 without restraints) Performing minimization step: 2132. Total energy = 543.0342 kcal/mol (543.0112 without restraints) Performing minimization step: 2133. Total energy = 542.8397 kcal/mol (542.8168 without restraints) Performing minimization step: 2134. Total energy = 542.6456 kcal/mol (542.6227 without restraints) Performing minimization step: 2135. Total energy = 542.4518 kcal/mol (542.4288 without restraints) Performing minimization step: 2136. Total energy = 542.2583 kcal/mol (542.2354 without restraints) Performing minimization step: 2137. Total energy = 542.0651 kcal/mol (542.0424 without restraints) Performing minimization step: 2138. Total energy = 541.8724 kcal/mol (541.8496 without restraints) Performing minimization step: 2139. Total energy = 541.6800 kcal/mol (541.6573 without restraints) Performing minimization step: 2140. Total energy = 541.4879 kcal/mol (541.4652 without restraints) Performing minimization step: 2141. Total energy = 541.2962 kcal/mol (541.2735 without restraints) Performing minimization step: 2142. Total energy = 541.1048 kcal/mol (541.0822 without restraints) Performing minimization step: 2143. Total energy = 540.9137 kcal/mol (540.8912 without restraints) Performing minimization step: 2144. Total energy = 540.7229 kcal/mol (540.7005 without restraints) Performing minimization step: 2145. Total energy = 540.5325 kcal/mol (540.5101 without restraints) Performing minimization step: 2146. Total energy = 540.3425 kcal/mol (540.3201 without restraints) Performing minimization step: 2147. Total energy = 540.1527 kcal/mol (540.1304 without restraints) Performing minimization step: 2148. Total energy = 539.9633 kcal/mol (539.9410 without restraints) Performing minimization step: 2149. Total energy = 539.7742 kcal/mol (539.7519 without restraints) Performing minimization step: 2150. Total energy = 539.5855 kcal/mol (539.5632 without restraints) Performing minimization step: 2151. Total energy = 539.3971 kcal/mol (539.3748 without restraints) Performing minimization step: 2152. Total energy = 539.2090 kcal/mol (539.1868 without restraints) Performing minimization step: 2153. Total energy = 539.0214 kcal/mol (538.9992 without restraints) Performing minimization step: 2154. Total energy = 538.8341 kcal/mol (538.8120 without restraints) Performing minimization step: 2155. Total energy = 538.6470 kcal/mol (538.6249 without restraints) Performing minimization step: 2156. Total energy = 538.4602 kcal/mol (538.4382 without restraints) Performing minimization step: 2157. Total energy = 538.2738 kcal/mol (538.2518 without restraints) Performing minimization step: 2158. Total energy = 538.0876 kcal/mol (538.0656 without restraints) Performing minimization step: 2159. Total energy = 537.9018 kcal/mol (537.8799 without restraints) Performing minimization step: 2160. Total energy = 537.7163 kcal/mol (537.6944 without restraints) Performing minimization step: 2161. Total energy = 537.5311 kcal/mol (537.5092 without restraints) Performing minimization step: 2162. Total energy = 537.3462 kcal/mol (537.3244 without restraints) Performing minimization step: 2163. Total energy = 537.1616 kcal/mol (537.1399 without restraints) Performing minimization step: 2164. Total energy = 536.9773 kcal/mol (536.9554 without restraints) Performing minimization step: 2165. Total energy = 536.7932 kcal/mol (536.7715 without restraints) Performing minimization step: 2166. Total energy = 536.6096 kcal/mol (536.5880 without restraints) Performing minimization step: 2167. Total energy = 536.4263 kcal/mol (536.4047 without restraints) Performing minimization step: 2168. Total energy = 536.2433 kcal/mol (536.2217 without restraints) Performing minimization step: 2169. Total energy = 536.0607 kcal/mol (536.0391 without restraints) Performing minimization step: 2170. Total energy = 535.8783 kcal/mol (535.8568 without restraints) Performing minimization step: 2171. Total energy = 535.6962 kcal/mol (535.6748 without restraints) Performing minimization step: 2172. Total energy = 535.5145 kcal/mol (535.4931 without restraints) Performing minimization step: 2173. Total energy = 535.3331 kcal/mol (535.3117 without restraints) Performing minimization step: 2174. Total energy = 535.1519 kcal/mol (535.1306 without restraints) Performing minimization step: 2175. Total energy = 534.9711 kcal/mol (534.9498 without restraints) Performing minimization step: 2176. Total energy = 534.7906 kcal/mol (534.7693 without restraints) Performing minimization step: 2177. Total energy = 534.6104 kcal/mol (534.5891 without restraints) Performing minimization step: 2178. Total energy = 534.4305 kcal/mol (534.4093 without restraints) Performing minimization step: 2179. Total energy = 534.2509 kcal/mol (534.2297 without restraints) Performing minimization step: 2180. Total energy = 534.0716 kcal/mol (534.0505 without restraints) Performing minimization step: 2181. Total energy = 533.8926 kcal/mol (533.8715 without restraints) Performing minimization step: 2182. Total energy = 533.7139 kcal/mol (533.6929 without restraints) Performing minimization step: 2183. Total energy = 533.5356 kcal/mol (533.5145 without restraints) Performing minimization step: 2184. Total energy = 533.3575 kcal/mol (533.3365 without restraints) Performing minimization step: 2185. Total energy = 533.1797 kcal/mol (533.1587 without restraints) Performing minimization step: 2186. Total energy = 533.0022 kcal/mol (532.9813 without restraints) Performing minimization step: 2187. Total energy = 532.8250 kcal/mol (532.8041 without restraints) Performing minimization step: 2188. Total energy = 532.6481 kcal/mol (532.6273 without restraints) Performing minimization step: 2189. Total energy = 532.4716 kcal/mol (532.4507 without restraints) Performing minimization step: 2190. Total energy = 532.2953 kcal/mol (532.2745 without restraints) Performing minimization step: 2191. Total energy = 532.1193 kcal/mol (532.0985 without restraints) Performing minimization step: 2192. Total energy = 531.9436 kcal/mol (531.9229 without restraints) Performing minimization step: 2193. Total energy = 531.7682 kcal/mol (531.7475 without restraints) Performing minimization step: 2194. Total energy = 531.5931 kcal/mol (531.5724 without restraints) Performing minimization step: 2195. Total energy = 531.4183 kcal/mol (531.3977 without restraints) Performing minimization step: 2196. Total energy = 531.2437 kcal/mol (531.2232 without restraints) Performing minimization step: 2197. Total energy = 531.0695 kcal/mol (531.0490 without restraints) Performing minimization step: 2198. Total energy = 530.8956 kcal/mol (530.8751 without restraints) Performing minimization step: 2199. Total energy = 530.7219 kcal/mol (530.7014 without restraints) Performing minimization step: 2200. Total energy = 530.5485 kcal/mol (530.5281 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 530.3755 kcal/mol (530.3551 without restraints) Performing minimization step: 2202. Total energy = 530.2027 kcal/mol (530.1823 without restraints) Performing minimization step: 2203. Total energy = 530.0302 kcal/mol (530.0098 without restraints) Performing minimization step: 2204. Total energy = 529.8577 kcal/mol (529.8374 without restraints) Performing minimization step: 2205. Total energy = 529.6858 kcal/mol (529.6655 without restraints) Performing minimization step: 2206. Total energy = 529.5142 kcal/mol (529.4939 without restraints) Performing minimization step: 2207. Total energy = 529.3428 kcal/mol (529.3226 without restraints) Performing minimization step: 2208. Total energy = 529.1717 kcal/mol (529.1515 without restraints) Performing minimization step: 2209. Total energy = 529.0011 kcal/mol (528.9809 without restraints) Performing minimization step: 2210. Total energy = 528.8306 kcal/mol (528.8105 without restraints) Performing minimization step: 2211. Total energy = 528.6603 kcal/mol (528.6403 without restraints) Performing minimization step: 2212. Total energy = 528.4904 kcal/mol (528.4703 without restraints) Performing minimization step: 2213. Total energy = 528.3207 kcal/mol (528.3007 without restraints) Performing minimization step: 2214. Total energy = 528.1513 kcal/mol (528.1313 without restraints) Performing minimization step: 2215. Total energy = 527.9822 kcal/mol (527.9623 without restraints) Performing minimization step: 2216. Total energy = 527.8134 kcal/mol (527.7935 without restraints) Performing minimization step: 2217. Total energy = 527.6449 kcal/mol (527.6250 without restraints) Performing minimization step: 2218. Total energy = 527.4761 kcal/mol (527.4563 without restraints) Performing minimization step: 2219. Total energy = 527.3081 kcal/mol (527.2883 without restraints) Performing minimization step: 2220. Total energy = 527.1404 kcal/mol (527.1206 without restraints) Performing minimization step: 2221. Total energy = 526.9729 kcal/mol (526.9532 without restraints) Performing minimization step: 2222. Total energy = 526.8058 kcal/mol (526.7860 without restraints) Performing minimization step: 2223. Total energy = 526.6388 kcal/mol (526.6192 without restraints) Performing minimization step: 2224. Total energy = 526.4722 kcal/mol (526.4526 without restraints) Performing minimization step: 2225. Total energy = 526.3058 kcal/mol (526.2862 without restraints) Performing minimization step: 2226. Total energy = 526.1397 kcal/mol (526.1201 without restraints) Performing minimization step: 2227. Total energy = 525.9739 kcal/mol (525.9544 without restraints) Performing minimization step: 2228. Total energy = 525.8086 kcal/mol (525.7890 without restraints) Performing minimization step: 2229. Total energy = 525.6433 kcal/mol (525.6238 without restraints) Performing minimization step: 2230. Total energy = 525.4783 kcal/mol (525.4588 without restraints) Performing minimization step: 2231. Total energy = 525.3135 kcal/mol (525.2941 without restraints) Performing minimization step: 2232. Total energy = 525.1492 kcal/mol (525.1298 without restraints) Performing minimization step: 2233. Total energy = 524.9850 kcal/mol (524.9656 without restraints) Performing minimization step: 2234. Total energy = 524.8210 kcal/mol (524.8017 without restraints) Performing minimization step: 2235. Total energy = 524.6573 kcal/mol (524.6380 without restraints) Performing minimization step: 2236. Total energy = 524.4939 kcal/mol (524.4746 without restraints) Performing minimization step: 2237. Total energy = 524.3307 kcal/mol (524.3115 without restraints) Performing minimization step: 2238. Total energy = 524.1678 kcal/mol (524.1486 without restraints) Performing minimization step: 2239. Total energy = 524.0052 kcal/mol (523.9860 without restraints) Performing minimization step: 2240. Total energy = 523.8428 kcal/mol (523.8237 without restraints) Performing minimization step: 2241. Total energy = 523.6807 kcal/mol (523.6616 without restraints) Performing minimization step: 2242. Total energy = 523.5189 kcal/mol (523.4998 without restraints) Performing minimization step: 2243. Total energy = 523.3574 kcal/mol (523.3384 without restraints) Performing minimization step: 2244. Total energy = 523.1961 kcal/mol (523.1771 without restraints) Performing minimization step: 2245. Total energy = 523.0350 kcal/mol (523.0160 without restraints) Performing minimization step: 2246. Total energy = 522.8742 kcal/mol (522.8552 without restraints) Performing minimization step: 2247. Total energy = 522.7137 kcal/mol (522.6947 without restraints) Performing minimization step: 2248. Total energy = 522.5534 kcal/mol (522.5344 without restraints) Performing minimization step: 2249. Total energy = 522.3933 kcal/mol (522.3744 without restraints) Performing minimization step: 2250. Total energy = 522.2335 kcal/mol (522.2147 without restraints) Performing minimization step: 2251. Total energy = 522.0742 kcal/mol (522.0554 without restraints) Performing minimization step: 2252. Total energy = 521.9149 kcal/mol (521.8961 without restraints) Performing minimization step: 2253. Total energy = 521.7559 kcal/mol (521.7371 without restraints) Performing minimization step: 2254. Total energy = 521.5971 kcal/mol (521.5784 without restraints) Performing minimization step: 2255. Total energy = 521.4386 kcal/mol (521.4199 without restraints) Performing minimization step: 2256. Total energy = 521.2800 kcal/mol (521.2613 without restraints) Performing minimization step: 2257. Total energy = 521.1219 kcal/mol (521.1033 without restraints) Performing minimization step: 2258. Total energy = 520.9641 kcal/mol (520.9455 without restraints) Performing minimization step: 2259. Total energy = 520.8066 kcal/mol (520.7880 without restraints) Performing minimization step: 2260. Total energy = 520.6491 kcal/mol (520.6306 without restraints) Performing minimization step: 2261. Total energy = 520.4921 kcal/mol (520.4736 without restraints) Performing minimization step: 2262. Total energy = 520.3353 kcal/mol (520.3168 without restraints) Performing minimization step: 2263. Total energy = 520.1788 kcal/mol (520.1603 without restraints) Performing minimization step: 2264. Total energy = 520.0225 kcal/mol (520.0041 without restraints) Performing minimization step: 2265. Total energy = 519.8665 kcal/mol (519.8481 without restraints) Performing minimization step: 2266. Total energy = 519.7107 kcal/mol (519.6923 without restraints) Performing minimization step: 2267. Total energy = 519.5551 kcal/mol (519.5368 without restraints) Performing minimization step: 2268. Total energy = 519.3998 kcal/mol (519.3815 without restraints) Performing minimization step: 2269. Total energy = 519.2448 kcal/mol (519.2265 without restraints) Performing minimization step: 2270. Total energy = 519.0899 kcal/mol (519.0717 without restraints) Performing minimization step: 2271. Total energy = 518.9354 kcal/mol (518.9171 without restraints) Performing minimization step: 2272. Total energy = 518.7810 kcal/mol (518.7628 without restraints) Performing minimization step: 2273. Total energy = 518.6269 kcal/mol (518.6088 without restraints) Performing minimization step: 2274. Total energy = 518.4731 kcal/mol (518.4549 without restraints) Performing minimization step: 2275. Total energy = 518.3195 kcal/mol (518.3013 without restraints) Performing minimization step: 2276. Total energy = 518.1661 kcal/mol (518.1480 without restraints) Performing minimization step: 2277. Total energy = 518.0130 kcal/mol (517.9949 without restraints) Performing minimization step: 2278. Total energy = 517.8601 kcal/mol (517.8420 without restraints) Performing minimization step: 2279. Total energy = 517.7074 kcal/mol (517.6894 without restraints) Performing minimization step: 2280. Total energy = 517.5549 kcal/mol (517.5369 without restraints) Performing minimization step: 2281. Total energy = 517.4025 kcal/mol (517.3845 without restraints) Performing minimization step: 2282. Total energy = 517.2505 kcal/mol (517.2326 without restraints) Performing minimization step: 2283. Total energy = 517.0986 kcal/mol (517.0807 without restraints) Performing minimization step: 2284. Total energy = 516.9472 kcal/mol (516.9293 without restraints) Performing minimization step: 2285. Total energy = 516.7959 kcal/mol (516.7781 without restraints) Performing minimization step: 2286. Total energy = 516.6449 kcal/mol (516.6271 without restraints) Performing minimization step: 2287. Total energy = 516.4941 kcal/mol (516.4763 without restraints) Performing minimization step: 2288. Total energy = 516.3436 kcal/mol (516.3258 without restraints) Performing minimization step: 2289. Total energy = 516.1933 kcal/mol (516.1756 without restraints) Performing minimization step: 2290. Total energy = 516.0432 kcal/mol (516.0255 without restraints) Performing minimization step: 2291. Total energy = 515.8934 kcal/mol (515.8757 without restraints) Performing minimization step: 2292. Total energy = 515.7437 kcal/mol (515.7261 without restraints) Performing minimization step: 2293. Total energy = 515.5944 kcal/mol (515.5767 without restraints) Performing minimization step: 2294. Total energy = 515.4452 kcal/mol (515.4276 without restraints) Performing minimization step: 2295. Total energy = 515.2963 kcal/mol (515.2787 without restraints) Performing minimization step: 2296. Total energy = 515.1473 kcal/mol (515.1298 without restraints) Performing minimization step: 2297. Total energy = 514.9989 kcal/mol (514.9813 without restraints) Performing minimization step: 2298. Total energy = 514.8506 kcal/mol (514.8331 without restraints) Performing minimization step: 2299. Total energy = 514.7026 kcal/mol (514.6851 without restraints) Performing minimization step: 2300. Total energy = 514.5548 kcal/mol (514.5374 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 514.4072 kcal/mol (514.3898 without restraints) Performing minimization step: 2302. Total energy = 514.2599 kcal/mol (514.2425 without restraints) Performing minimization step: 2303. Total energy = 514.1125 kcal/mol (514.0952 without restraints) Performing minimization step: 2304. Total energy = 513.9658 kcal/mol (513.9485 without restraints) Performing minimization step: 2305. Total energy = 513.8192 kcal/mol (513.8019 without restraints) Performing minimization step: 2306. Total energy = 513.6727 kcal/mol (513.6555 without restraints) Performing minimization step: 2307. Total energy = 513.5265 kcal/mol (513.5093 without restraints) Performing minimization step: 2308. Total energy = 513.3805 kcal/mol (513.3633 without restraints) Performing minimization step: 2309. Total energy = 513.2347 kcal/mol (513.2175 without restraints) Performing minimization step: 2310. Total energy = 513.0892 kcal/mol (513.0720 without restraints) Performing minimization step: 2311. Total energy = 512.9438 kcal/mol (512.9267 without restraints) Performing minimization step: 2312. Total energy = 512.7987 kcal/mol (512.7816 without restraints) Performing minimization step: 2313. Total energy = 512.6538 kcal/mol (512.6368 without restraints) Performing minimization step: 2314. Total energy = 512.5092 kcal/mol (512.4921 without restraints) Performing minimization step: 2315. Total energy = 512.3647 kcal/mol (512.3477 without restraints) Performing minimization step: 2316. Total energy = 512.2205 kcal/mol (512.2035 without restraints) Performing minimization step: 2317. Total energy = 512.0765 kcal/mol (512.0596 without restraints) Performing minimization step: 2318. Total energy = 511.9327 kcal/mol (511.9158 without restraints) Performing minimization step: 2319. Total energy = 511.7891 kcal/mol (511.7722 without restraints) Performing minimization step: 2320. Total energy = 511.6458 kcal/mol (511.6289 without restraints) Performing minimization step: 2321. Total energy = 511.5026 kcal/mol (511.4857 without restraints) Performing minimization step: 2322. Total energy = 511.3595 kcal/mol (511.3426 without restraints) Performing minimization step: 2323. Total energy = 511.2167 kcal/mol (511.1999 without restraints) Performing minimization step: 2324. Total energy = 511.0740 kcal/mol (511.0572 without restraints) Performing minimization step: 2325. Total energy = 510.9317 kcal/mol (510.9149 without restraints) Performing minimization step: 2326. Total energy = 510.7896 kcal/mol (510.7729 without restraints) Performing minimization step: 2327. Total energy = 510.6477 kcal/mol (510.6310 without restraints) Performing minimization step: 2328. Total energy = 510.5061 kcal/mol (510.4894 without restraints) Performing minimization step: 2329. Total energy = 510.3646 kcal/mol (510.3479 without restraints) Performing minimization step: 2330. Total energy = 510.2234 kcal/mol (510.2067 without restraints) Performing minimization step: 2331. Total energy = 510.0823 kcal/mol (510.0657 without restraints) Performing minimization step: 2332. Total energy = 509.9415 kcal/mol (509.9249 without restraints) Performing minimization step: 2333. Total energy = 509.8009 kcal/mol (509.7843 without restraints) Performing minimization step: 2334. Total energy = 509.6605 kcal/mol (509.6439 without restraints) Performing minimization step: 2335. Total energy = 509.5203 kcal/mol (509.5037 without restraints) Performing minimization step: 2336. Total energy = 509.3803 kcal/mol (509.3638 without restraints) Performing minimization step: 2337. Total energy = 509.2405 kcal/mol (509.2240 without restraints) Performing minimization step: 2338. Total energy = 509.1009 kcal/mol (509.0844 without restraints) Performing minimization step: 2339. Total energy = 508.9615 kcal/mol (508.9451 without restraints) Performing minimization step: 2340. Total energy = 508.8226 kcal/mol (508.8061 without restraints) Performing minimization step: 2341. Total energy = 508.6836 kcal/mol (508.6672 without restraints) Performing minimization step: 2342. Total energy = 508.5448 kcal/mol (508.5285 without restraints) Performing minimization step: 2343. Total energy = 508.4065 kcal/mol (508.3902 without restraints) Performing minimization step: 2344. Total energy = 508.2682 kcal/mol (508.2518 without restraints) Performing minimization step: 2345. Total energy = 508.1298 kcal/mol (508.1135 without restraints) Performing minimization step: 2346. Total energy = 507.9917 kcal/mol (507.9754 without restraints) Performing minimization step: 2347. Total energy = 507.8540 kcal/mol (507.8377 without restraints) Performing minimization step: 2348. Total energy = 507.7164 kcal/mol (507.7002 without restraints) Performing minimization step: 2349. Total energy = 507.5791 kcal/mol (507.5629 without restraints) Performing minimization step: 2350. Total energy = 507.4420 kcal/mol (507.4258 without restraints) Performing minimization step: 2351. Total energy = 507.3050 kcal/mol (507.2889 without restraints) Performing minimization step: 2352. Total energy = 507.1683 kcal/mol (507.1522 without restraints) Performing minimization step: 2353. Total energy = 507.0318 kcal/mol (507.0157 without restraints) Performing minimization step: 2354. Total energy = 506.8954 kcal/mol (506.8794 without restraints) Performing minimization step: 2355. Total energy = 506.7593 kcal/mol (506.7433 without restraints) Performing minimization step: 2356. Total energy = 506.6234 kcal/mol (506.6074 without restraints) Performing minimization step: 2357. Total energy = 506.4877 kcal/mol (506.4717 without restraints) Performing minimization step: 2358. Total energy = 506.3521 kcal/mol (506.3361 without restraints) Performing minimization step: 2359. Total energy = 506.2168 kcal/mol (506.2008 without restraints) Performing minimization step: 2360. Total energy = 506.0816 kcal/mol (506.0657 without restraints) Performing minimization step: 2361. Total energy = 505.9467 kcal/mol (505.9308 without restraints) Performing minimization step: 2362. Total energy = 505.8119 kcal/mol (505.7960 without restraints) Performing minimization step: 2363. Total energy = 505.6774 kcal/mol (505.6615 without restraints) Performing minimization step: 2364. Total energy = 505.5430 kcal/mol (505.5272 without restraints) Performing minimization step: 2365. Total energy = 505.4089 kcal/mol (505.3931 without restraints) Performing minimization step: 2366. Total energy = 505.2750 kcal/mol (505.2592 without restraints) Performing minimization step: 2367. Total energy = 505.1412 kcal/mol (505.1254 without restraints) Performing minimization step: 2368. Total energy = 505.0076 kcal/mol (504.9918 without restraints) Performing minimization step: 2369. Total energy = 504.8742 kcal/mol (504.8585 without restraints) Performing minimization step: 2370. Total energy = 504.7408 kcal/mol (504.7251 without restraints) Performing minimization step: 2371. Total energy = 504.6078 kcal/mol (504.5921 without restraints) Performing minimization step: 2372. Total energy = 504.4750 kcal/mol (504.4593 without restraints) Performing minimization step: 2373. Total energy = 504.3424 kcal/mol (504.3267 without restraints) Performing minimization step: 2374. Total energy = 504.2099 kcal/mol (504.1943 without restraints) Performing minimization step: 2375. Total energy = 504.0777 kcal/mol (504.0621 without restraints) Performing minimization step: 2376. Total energy = 503.9456 kcal/mol (503.9301 without restraints) Performing minimization step: 2377. Total energy = 503.8138 kcal/mol (503.7982 without restraints) Performing minimization step: 2378. Total energy = 503.6821 kcal/mol (503.6666 without restraints) Performing minimization step: 2379. Total energy = 503.5506 kcal/mol (503.5351 without restraints) Performing minimization step: 2380. Total energy = 503.4193 kcal/mol (503.4038 without restraints) Performing minimization step: 2381. Total energy = 503.2882 kcal/mol (503.2727 without restraints) Performing minimization step: 2382. Total energy = 503.1573 kcal/mol (503.1418 without restraints) Performing minimization step: 2383. Total energy = 503.0265 kcal/mol (503.0111 without restraints) Performing minimization step: 2384. Total energy = 502.8960 kcal/mol (502.8806 without restraints) Performing minimization step: 2385. Total energy = 502.7652 kcal/mol (502.7499 without restraints) Performing minimization step: 2386. Total energy = 502.6351 kcal/mol (502.6197 without restraints) Performing minimization step: 2387. Total energy = 502.5051 kcal/mol (502.4897 without restraints) Performing minimization step: 2388. Total energy = 502.3753 kcal/mol (502.3599 without restraints) Performing minimization step: 2389. Total energy = 502.2457 kcal/mol (502.2304 without restraints) Performing minimization step: 2390. Total energy = 502.1162 kcal/mol (502.1010 without restraints) Performing minimization step: 2391. Total energy = 501.9870 kcal/mol (501.9717 without restraints) Performing minimization step: 2392. Total energy = 501.8579 kcal/mol (501.8427 without restraints) Performing minimization step: 2393. Total energy = 501.7290 kcal/mol (501.7138 without restraints) Performing minimization step: 2394. Total energy = 501.6003 kcal/mol (501.5852 without restraints) Performing minimization step: 2395. Total energy = 501.4718 kcal/mol (501.4567 without restraints) Performing minimization step: 2396. Total energy = 501.3435 kcal/mol (501.3283 without restraints) Performing minimization step: 2397. Total energy = 501.2153 kcal/mol (501.2002 without restraints) Performing minimization step: 2398. Total energy = 501.0873 kcal/mol (501.0722 without restraints) Performing minimization step: 2399. Total energy = 500.9595 kcal/mol (500.9445 without restraints) Performing minimization step: 2400. Total energy = 500.8323 kcal/mol (500.8173 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 500.7049 kcal/mol (500.6899 without restraints) Performing minimization step: 2402. Total energy = 500.5776 kcal/mol (500.5626 without restraints) Performing minimization step: 2403. Total energy = 500.4506 kcal/mol (500.4356 without restraints) Performing minimization step: 2404. Total energy = 500.3237 kcal/mol (500.3087 without restraints) Performing minimization step: 2405. Total energy = 500.1969 kcal/mol (500.1820 without restraints) Performing minimization step: 2406. Total energy = 500.0704 kcal/mol (500.0555 without restraints) Performing minimization step: 2407. Total energy = 499.9440 kcal/mol (499.9291 without restraints) Performing minimization step: 2408. Total energy = 499.8178 kcal/mol (499.8030 without restraints) Performing minimization step: 2409. Total energy = 499.6918 kcal/mol (499.6770 without restraints) Performing minimization step: 2410. Total energy = 499.5660 kcal/mol (499.5511 without restraints) Performing minimization step: 2411. Total energy = 499.4403 kcal/mol (499.4255 without restraints) Performing minimization step: 2412. Total energy = 499.3148 kcal/mol (499.3000 without restraints) Performing minimization step: 2413. Total energy = 499.1896 kcal/mol (499.1748 without restraints) Performing minimization step: 2414. Total energy = 499.0644 kcal/mol (499.0497 without restraints) Performing minimization step: 2415. Total energy = 498.9395 kcal/mol (498.9247 without restraints) Performing minimization step: 2416. Total energy = 498.8147 kcal/mol (498.8000 without restraints) Performing minimization step: 2417. Total energy = 498.6901 kcal/mol (498.6754 without restraints) Performing minimization step: 2418. Total energy = 498.5656 kcal/mol (498.5509 without restraints) Performing minimization step: 2419. Total energy = 498.4413 kcal/mol (498.4267 without restraints) Performing minimization step: 2420. Total energy = 498.3172 kcal/mol (498.3026 without restraints) Performing minimization step: 2421. Total energy = 498.1933 kcal/mol (498.1787 without restraints) Performing minimization step: 2422. Total energy = 498.0696 kcal/mol (498.0550 without restraints) Performing minimization step: 2423. Total energy = 497.9460 kcal/mol (497.9314 without restraints) Performing minimization step: 2424. Total energy = 497.8226 kcal/mol (497.8080 without restraints) Performing minimization step: 2425. Total energy = 497.6994 kcal/mol (497.6848 without restraints) Performing minimization step: 2426. Total energy = 497.5763 kcal/mol (497.5618 without restraints) Performing minimization step: 2427. Total energy = 497.4534 kcal/mol (497.4389 without restraints) Performing minimization step: 2428. Total energy = 497.3307 kcal/mol (497.3162 without restraints) Performing minimization step: 2429. Total energy = 497.2081 kcal/mol (497.1936 without restraints) Performing minimization step: 2430. Total energy = 497.0855 kcal/mol (497.0710 without restraints) Performing minimization step: 2431. Total energy = 496.9633 kcal/mol (496.9488 without restraints) Performing minimization step: 2432. Total energy = 496.8412 kcal/mol (496.8268 without restraints) Performing minimization step: 2433. Total energy = 496.7193 kcal/mol (496.7049 without restraints) Performing minimization step: 2434. Total energy = 496.5976 kcal/mol (496.5833 without restraints) Performing minimization step: 2435. Total energy = 496.4761 kcal/mol (496.4617 without restraints) Performing minimization step: 2436. Total energy = 496.3547 kcal/mol (496.3404 without restraints) Performing minimization step: 2437. Total energy = 496.2335 kcal/mol (496.2192 without restraints) Performing minimization step: 2438. Total energy = 496.1124 kcal/mol (496.0982 without restraints) Performing minimization step: 2439. Total energy = 495.9916 kcal/mol (495.9773 without restraints) Performing minimization step: 2440. Total energy = 495.8708 kcal/mol (495.8566 without restraints) Performing minimization step: 2441. Total energy = 495.7503 kcal/mol (495.7361 without restraints) Performing minimization step: 2442. Total energy = 495.6300 kcal/mol (495.6158 without restraints) Performing minimization step: 2443. Total energy = 495.5097 kcal/mol (495.4954 without restraints) Performing minimization step: 2444. Total energy = 495.3895 kcal/mol (495.3754 without restraints) Performing minimization step: 2445. Total energy = 495.2696 kcal/mol (495.2555 without restraints) Performing minimization step: 2446. Total energy = 495.1499 kcal/mol (495.1358 without restraints) Performing minimization step: 2447. Total energy = 495.0304 kcal/mol (495.0162 without restraints) Performing minimization step: 2448. Total energy = 494.9110 kcal/mol (494.8969 without restraints) Performing minimization step: 2449. Total energy = 494.7917 kcal/mol (494.7777 without restraints) Performing minimization step: 2450. Total energy = 494.6726 kcal/mol (494.6586 without restraints) Performing minimization step: 2451. Total energy = 494.5537 kcal/mol (494.5397 without restraints) Performing minimization step: 2452. Total energy = 494.4348 kcal/mol (494.4208 without restraints) Performing minimization step: 2453. Total energy = 494.3162 kcal/mol (494.3022 without restraints) Performing minimization step: 2454. Total energy = 494.1977 kcal/mol (494.1838 without restraints) Performing minimization step: 2455. Total energy = 494.0797 kcal/mol (494.0657 without restraints) Performing minimization step: 2456. Total energy = 493.9613 kcal/mol (493.9474 without restraints) Performing minimization step: 2457. Total energy = 493.8433 kcal/mol (493.8294 without restraints) Performing minimization step: 2458. Total energy = 493.7256 kcal/mol (493.7117 without restraints) Performing minimization step: 2459. Total energy = 493.6079 kcal/mol (493.5940 without restraints) Performing minimization step: 2460. Total energy = 493.4904 kcal/mol (493.4766 without restraints) Performing minimization step: 2461. Total energy = 493.3731 kcal/mol (493.3593 without restraints) Performing minimization step: 2462. Total energy = 493.2560 kcal/mol (493.2421 without restraints) Performing minimization step: 2463. Total energy = 493.1390 kcal/mol (493.1252 without restraints) Performing minimization step: 2464. Total energy = 493.0223 kcal/mol (493.0085 without restraints) Performing minimization step: 2465. Total energy = 492.9057 kcal/mol (492.8919 without restraints) Performing minimization step: 2466. Total energy = 492.7892 kcal/mol (492.7754 without restraints) Performing minimization step: 2467. Total energy = 492.6728 kcal/mol (492.6591 without restraints) Performing minimization step: 2468. Total energy = 492.5566 kcal/mol (492.5429 without restraints) Performing minimization step: 2469. Total energy = 492.4406 kcal/mol (492.4269 without restraints) Performing minimization step: 2470. Total energy = 492.3245 kcal/mol (492.3108 without restraints) Performing minimization step: 2471. Total energy = 492.2087 kcal/mol (492.1951 without restraints) Performing minimization step: 2472. Total energy = 492.0933 kcal/mol (492.0797 without restraints) Performing minimization step: 2473. Total energy = 491.9779 kcal/mol (491.9643 without restraints) Performing minimization step: 2474. Total energy = 491.8626 kcal/mol (491.8490 without restraints) Performing minimization step: 2475. Total energy = 491.7473 kcal/mol (491.7337 without restraints) Performing minimization step: 2476. Total energy = 491.6324 kcal/mol (491.6188 without restraints) Performing minimization step: 2477. Total energy = 491.5175 kcal/mol (491.5040 without restraints) Performing minimization step: 2478. Total energy = 491.4029 kcal/mol (491.3894 without restraints) Performing minimization step: 2479. Total energy = 491.2884 kcal/mol (491.2749 without restraints) Performing minimization step: 2480. Total energy = 491.1740 kcal/mol (491.1605 without restraints) Performing minimization step: 2481. Total energy = 491.0598 kcal/mol (491.0464 without restraints) Performing minimization step: 2482. Total energy = 490.9458 kcal/mol (490.9323 without restraints) Performing minimization step: 2483. Total energy = 490.8319 kcal/mol (490.8185 without restraints) Performing minimization step: 2484. Total energy = 490.7181 kcal/mol (490.7047 without restraints) Performing minimization step: 2485. Total energy = 490.6045 kcal/mol (490.5911 without restraints) Performing minimization step: 2486. Total energy = 490.4911 kcal/mol (490.4777 without restraints) Performing minimization step: 2487. Total energy = 490.3778 kcal/mol (490.3644 without restraints) Performing minimization step: 2488. Total energy = 490.2646 kcal/mol (490.2513 without restraints) Performing minimization step: 2489. Total energy = 490.1519 kcal/mol (490.1385 without restraints) Performing minimization step: 2490. Total energy = 490.0390 kcal/mol (490.0257 without restraints) Performing minimization step: 2491. Total energy = 489.9263 kcal/mol (489.9130 without restraints) Performing minimization step: 2492. Total energy = 489.8138 kcal/mol (489.8005 without restraints) Performing minimization step: 2493. Total energy = 489.7014 kcal/mol (489.6881 without restraints) Performing minimization step: 2494. Total energy = 489.5892 kcal/mol (489.5759 without restraints) Performing minimization step: 2495. Total energy = 489.4768 kcal/mol (489.4636 without restraints) Performing minimization step: 2496. Total energy = 489.3649 kcal/mol (489.3517 without restraints) Performing minimization step: 2497. Total energy = 489.2531 kcal/mol (489.2399 without restraints) Performing minimization step: 2498. Total energy = 489.1414 kcal/mol (489.1283 without restraints) Performing minimization step: 2499. Total energy = 489.0299 kcal/mol (489.0168 without restraints) Performing minimization step: 2500. Total energy = 488.9186 kcal/mol (488.9054 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 488.8074 kcal/mol (488.7942 without restraints) Performing minimization step: 2502. Total energy = 488.6961 kcal/mol (488.6830 without restraints) Performing minimization step: 2503. Total energy = 488.5852 kcal/mol (488.5721 without restraints) Performing minimization step: 2504. Total energy = 488.4744 kcal/mol (488.4613 without restraints) Performing minimization step: 2505. Total energy = 488.3638 kcal/mol (488.3507 without restraints) Performing minimization step: 2506. Total energy = 488.2533 kcal/mol (488.2403 without restraints) Performing minimization step: 2507. Total energy = 488.1429 kcal/mol (488.1299 without restraints) Performing minimization step: 2508. Total energy = 488.0328 kcal/mol (488.0198 without restraints) Performing minimization step: 2509. Total energy = 487.9227 kcal/mol (487.9097 without restraints) Performing minimization step: 2510. Total energy = 487.8128 kcal/mol (487.7998 without restraints) Performing minimization step: 2511. Total energy = 487.7030 kcal/mol (487.6901 without restraints) Performing minimization step: 2512. Total energy = 487.5934 kcal/mol (487.5805 without restraints) Performing minimization step: 2513. Total energy = 487.4840 kcal/mol (487.4710 without restraints) Performing minimization step: 2514. Total energy = 487.3746 kcal/mol (487.3617 without restraints) Performing minimization step: 2515. Total energy = 487.2650 kcal/mol (487.2522 without restraints) Performing minimization step: 2516. Total energy = 487.1560 kcal/mol (487.1431 without restraints) Performing minimization step: 2517. Total energy = 487.0471 kcal/mol (487.0343 without restraints) Performing minimization step: 2518. Total energy = 486.9383 kcal/mol (486.9255 without restraints) Performing minimization step: 2519. Total energy = 486.8297 kcal/mol (486.8169 without restraints) Performing minimization step: 2520. Total energy = 486.7212 kcal/mol (486.7084 without restraints) Performing minimization step: 2521. Total energy = 486.6126 kcal/mol (486.5999 without restraints) Performing minimization step: 2522. Total energy = 486.5045 kcal/mol (486.4917 without restraints) Performing minimization step: 2523. Total energy = 486.3964 kcal/mol (486.3837 without restraints) Performing minimization step: 2524. Total energy = 486.2885 kcal/mol (486.2758 without restraints) Performing minimization step: 2525. Total energy = 486.1807 kcal/mol (486.1680 without restraints) Performing minimization step: 2526. Total energy = 486.0731 kcal/mol (486.0604 without restraints) Performing minimization step: 2527. Total energy = 485.9654 kcal/mol (485.9527 without restraints) Performing minimization step: 2528. Total energy = 485.8580 kcal/mol (485.8454 without restraints) Performing minimization step: 2529. Total energy = 485.7508 kcal/mol (485.7382 without restraints) Performing minimization step: 2530. Total energy = 485.6437 kcal/mol (485.6311 without restraints) Performing minimization step: 2531. Total energy = 485.5368 kcal/mol (485.5242 without restraints) Performing minimization step: 2532. Total energy = 485.4300 kcal/mol (485.4174 without restraints) Performing minimization step: 2533. Total energy = 485.3233 kcal/mol (485.3108 without restraints) Performing minimization step: 2534. Total energy = 485.2166 kcal/mol (485.2040 without restraints) Performing minimization step: 2535. Total energy = 485.1102 kcal/mol (485.0976 without restraints) Performing minimization step: 2536. Total energy = 485.0039 kcal/mol (484.9914 without restraints) Performing minimization step: 2537. Total energy = 484.8978 kcal/mol (484.8853 without restraints) Performing minimization step: 2538. Total energy = 484.7918 kcal/mol (484.7793 without restraints) Performing minimization step: 2539. Total energy = 484.6860 kcal/mol (484.6735 without restraints) Performing minimization step: 2540. Total energy = 484.5803 kcal/mol (484.5678 without restraints) Performing minimization step: 2541. Total energy = 484.4747 kcal/mol (484.4622 without restraints) Performing minimization step: 2542. Total energy = 484.3693 kcal/mol (484.3568 without restraints) Performing minimization step: 2543. Total energy = 484.2642 kcal/mol (484.2518 without restraints) Performing minimization step: 2544. Total energy = 484.1590 kcal/mol (484.1466 without restraints) Performing minimization step: 2545. Total energy = 484.0540 kcal/mol (484.0416 without restraints) Performing minimization step: 2546. Total energy = 483.9491 kcal/mol (483.9367 without restraints) Performing minimization step: 2547. Total energy = 483.8443 kcal/mol (483.8320 without restraints) Performing minimization step: 2548. Total energy = 483.7397 kcal/mol (483.7274 without restraints) Performing minimization step: 2549. Total energy = 483.6352 kcal/mol (483.6229 without restraints) Performing minimization step: 2550. Total energy = 483.5309 kcal/mol (483.5185 without restraints) Performing minimization step: 2551. Total energy = 483.4266 kcal/mol (483.4143 without restraints) Performing minimization step: 2552. Total energy = 483.3225 kcal/mol (483.3103 without restraints) Performing minimization step: 2553. Total energy = 483.2186 kcal/mol (483.2063 without restraints) Performing minimization step: 2554. Total energy = 483.1147 kcal/mol (483.1025 without restraints) Performing minimization step: 2555. Total energy = 483.0110 kcal/mol (482.9988 without restraints) Performing minimization step: 2556. Total energy = 482.9075 kcal/mol (482.8953 without restraints) Performing minimization step: 2557. Total energy = 482.8039 kcal/mol (482.7917 without restraints) Performing minimization step: 2558. Total energy = 482.7006 kcal/mol (482.6884 without restraints) Performing minimization step: 2559. Total energy = 482.5974 kcal/mol (482.5853 without restraints) Performing minimization step: 2560. Total energy = 482.4944 kcal/mol (482.4822 without restraints) Performing minimization step: 2561. Total energy = 482.3915 kcal/mol (482.3794 without restraints) Performing minimization step: 2562. Total energy = 482.2887 kcal/mol (482.2766 without restraints) Performing minimization step: 2563. Total energy = 482.1861 kcal/mol (482.1740 without restraints) Performing minimization step: 2564. Total energy = 482.0836 kcal/mol (482.0715 without restraints) Performing minimization step: 2565. Total energy = 481.9812 kcal/mol (481.9691 without restraints) Performing minimization step: 2566. Total energy = 481.8797 kcal/mol (481.8676 without restraints) Performing minimization step: 2567. Total energy = 481.7775 kcal/mol (481.7655 without restraints) Performing minimization step: 2568. Total energy = 481.6755 kcal/mol (481.6635 without restraints) Performing minimization step: 2569. Total energy = 481.5737 kcal/mol (481.5617 without restraints) Performing minimization step: 2570. Total energy = 481.4719 kcal/mol (481.4599 without restraints) Performing minimization step: 2571. Total energy = 481.3703 kcal/mol (481.3583 without restraints) Performing minimization step: 2572. Total energy = 481.2689 kcal/mol (481.2569 without restraints) Performing minimization step: 2573. Total energy = 481.1675 kcal/mol (481.1555 without restraints) Performing minimization step: 2574. Total energy = 481.0663 kcal/mol (481.0543 without restraints) Performing minimization step: 2575. Total energy = 480.9652 kcal/mol (480.9532 without restraints) Performing minimization step: 2576. Total energy = 480.8642 kcal/mol (480.8523 without restraints) Performing minimization step: 2577. Total energy = 480.7634 kcal/mol (480.7515 without restraints) Performing minimization step: 2578. Total energy = 480.6627 kcal/mol (480.6508 without restraints) Performing minimization step: 2579. Total energy = 480.5621 kcal/mol (480.5502 without restraints) Performing minimization step: 2580. Total energy = 480.4616 kcal/mol (480.4498 without restraints) Performing minimization step: 2581. Total energy = 480.3613 kcal/mol (480.3494 without restraints) Performing minimization step: 2582. Total energy = 480.2610 kcal/mol (480.2492 without restraints) Performing minimization step: 2583. Total energy = 480.1610 kcal/mol (480.1491 without restraints) Performing minimization step: 2584. Total energy = 480.0610 kcal/mol (480.0492 without restraints) Performing minimization step: 2585. Total energy = 479.9611 kcal/mol (479.9494 without restraints) Performing minimization step: 2586. Total energy = 479.8614 kcal/mol (479.8496 without restraints) Performing minimization step: 2587. Total energy = 479.7618 kcal/mol (479.7500 without restraints) Performing minimization step: 2588. Total energy = 479.6625 kcal/mol (479.6510 without restraints) Performing minimization step: 2589. Total energy = 479.5634 kcal/mol (479.5517 without restraints) Performing minimization step: 2590. Total energy = 479.4642 kcal/mol (479.4525 without restraints) Performing minimization step: 2591. Total energy = 479.3651 kcal/mol (479.3534 without restraints) Performing minimization step: 2592. Total energy = 479.2661 kcal/mol (479.2545 without restraints) Performing minimization step: 2593. Total energy = 479.1673 kcal/mol (479.1556 without restraints) Performing minimization step: 2594. Total energy = 479.0686 kcal/mol (479.0569 without restraints) Performing minimization step: 2595. Total energy = 478.9699 kcal/mol (478.9583 without restraints) Performing minimization step: 2596. Total energy = 478.8715 kcal/mol (478.8598 without restraints) Performing minimization step: 2597. Total energy = 478.7731 kcal/mol (478.7615 without restraints) Performing minimization step: 2598. Total energy = 478.6749 kcal/mol (478.6633 without restraints) Performing minimization step: 2599. Total energy = 478.5767 kcal/mol (478.5652 without restraints) Performing minimization step: 2600. Total energy = 478.4787 kcal/mol (478.4672 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 478.3809 kcal/mol (478.3693 without restraints) Performing minimization step: 2602. Total energy = 478.2833 kcal/mol (478.2718 without restraints) Performing minimization step: 2603. Total energy = 478.1857 kcal/mol (478.1741 without restraints) Performing minimization step: 2604. Total energy = 478.0881 kcal/mol (478.0766 without restraints) Performing minimization step: 2605. Total energy = 477.9907 kcal/mol (477.9792 without restraints) Performing minimization step: 2606. Total energy = 477.8935 kcal/mol (477.8820 without restraints) Performing minimization step: 2607. Total energy = 477.7965 kcal/mol (477.7850 without restraints) Performing minimization step: 2608. Total energy = 477.6994 kcal/mol (477.6880 without restraints) Performing minimization step: 2609. Total energy = 477.6025 kcal/mol (477.5911 without restraints) Performing minimization step: 2610. Total energy = 477.5057 kcal/mol (477.4943 without restraints) Performing minimization step: 2611. Total energy = 477.4091 kcal/mol (477.3977 without restraints) Performing minimization step: 2612. Total energy = 477.3125 kcal/mol (477.3011 without restraints) Performing minimization step: 2613. Total energy = 477.2159 kcal/mol (477.2045 without restraints) Performing minimization step: 2614. Total energy = 477.1196 kcal/mol (477.1082 without restraints) Performing minimization step: 2615. Total energy = 477.0234 kcal/mol (477.0120 without restraints) Performing minimization step: 2616. Total energy = 476.9273 kcal/mol (476.9159 without restraints) Performing minimization step: 2617. Total energy = 476.8313 kcal/mol (476.8200 without restraints) Performing minimization step: 2618. Total energy = 476.7355 kcal/mol (476.7242 without restraints) Performing minimization step: 2619. Total energy = 476.6397 kcal/mol (476.6284 without restraints) Performing minimization step: 2620. Total energy = 476.5441 kcal/mol (476.5328 without restraints) Performing minimization step: 2621. Total energy = 476.4486 kcal/mol (476.4374 without restraints) Performing minimization step: 2622. Total energy = 476.3533 kcal/mol (476.3420 without restraints) Performing minimization step: 2623. Total energy = 476.2581 kcal/mol (476.2469 without restraints) Performing minimization step: 2624. Total energy = 476.1631 kcal/mol (476.1518 without restraints) Performing minimization step: 2625. Total energy = 476.0680 kcal/mol (476.0568 without restraints) Performing minimization step: 2626. Total energy = 475.9731 kcal/mol (475.9619 without restraints) Performing minimization step: 2627. Total energy = 475.8783 kcal/mol (475.8671 without restraints) Performing minimization step: 2628. Total energy = 475.7837 kcal/mol (475.7725 without restraints) Performing minimization step: 2629. Total energy = 475.6891 kcal/mol (475.6779 without restraints) Performing minimization step: 2630. Total energy = 475.5946 kcal/mol (475.5835 without restraints) Performing minimization step: 2631. Total energy = 475.5003 kcal/mol (475.4892 without restraints) Performing minimization step: 2632. Total energy = 475.4061 kcal/mol (475.3950 without restraints) Performing minimization step: 2633. Total energy = 475.3120 kcal/mol (475.3009 without restraints) Performing minimization step: 2634. Total energy = 475.2180 kcal/mol (475.2069 without restraints) Performing minimization step: 2635. Total energy = 475.1241 kcal/mol (475.1130 without restraints) Performing minimization step: 2636. Total energy = 475.0303 kcal/mol (475.0193 without restraints) Performing minimization step: 2637. Total energy = 474.9367 kcal/mol (474.9256 without restraints) Performing minimization step: 2638. Total energy = 474.8432 kcal/mol (474.8323 without restraints) Performing minimization step: 2639. Total energy = 474.7499 kcal/mol (474.7389 without restraints) Performing minimization step: 2640. Total energy = 474.6566 kcal/mol (474.6456 without restraints) Performing minimization step: 2641. Total energy = 474.5634 kcal/mol (474.5524 without restraints) Performing minimization step: 2642. Total energy = 474.4703 kcal/mol (474.4593 without restraints) Performing minimization step: 2643. Total energy = 474.3773 kcal/mol (474.3663 without restraints) Performing minimization step: 2644. Total energy = 474.2844 kcal/mol (474.2735 without restraints) Performing minimization step: 2645. Total energy = 474.1917 kcal/mol (474.1808 without restraints) Performing minimization step: 2646. Total energy = 474.0991 kcal/mol (474.0881 without restraints) Performing minimization step: 2647. Total energy = 474.0065 kcal/mol (473.9956 without restraints) Performing minimization step: 2648. Total energy = 473.9141 kcal/mol (473.9032 without restraints) Performing minimization step: 2649. Total energy = 473.8218 kcal/mol (473.8109 without restraints) Performing minimization step: 2650. Total energy = 473.7296 kcal/mol (473.7187 without restraints) Performing minimization step: 2651. Total energy = 473.6375 kcal/mol (473.6266 without restraints) Performing minimization step: 2652. Total energy = 473.5455 kcal/mol (473.5347 without restraints) Performing minimization step: 2653. Total energy = 473.4537 kcal/mol (473.4428 without restraints) Performing minimization step: 2654. Total energy = 473.3619 kcal/mol (473.3511 without restraints) Performing minimization step: 2655. Total energy = 473.2704 kcal/mol (473.2596 without restraints) Performing minimization step: 2656. Total energy = 473.1789 kcal/mol (473.1681 without restraints) Performing minimization step: 2657. Total energy = 473.0875 kcal/mol (473.0767 without restraints) Performing minimization step: 2658. Total energy = 472.9962 kcal/mol (472.9854 without restraints) Performing minimization step: 2659. Total energy = 472.9050 kcal/mol (472.8942 without restraints) Performing minimization step: 2660. Total energy = 472.8139 kcal/mol (472.8031 without restraints) Performing minimization step: 2661. Total energy = 472.7229 kcal/mol (472.7121 without restraints) Performing minimization step: 2662. Total energy = 472.6320 kcal/mol (472.6213 without restraints) Performing minimization step: 2663. Total energy = 472.5412 kcal/mol (472.5305 without restraints) Performing minimization step: 2664. Total energy = 472.4505 kcal/mol (472.4398 without restraints) Performing minimization step: 2665. Total energy = 472.3600 kcal/mol (472.3493 without restraints) Performing minimization step: 2666. Total energy = 472.2693 kcal/mol (472.2587 without restraints) Performing minimization step: 2667. Total energy = 472.1790 kcal/mol (472.1683 without restraints) Performing minimization step: 2668. Total energy = 472.0887 kcal/mol (472.0781 without restraints) Performing minimization step: 2669. Total energy = 471.9986 kcal/mol (471.9880 without restraints) Performing minimization step: 2670. Total energy = 471.9086 kcal/mol (471.8979 without restraints) Performing minimization step: 2671. Total energy = 471.8186 kcal/mol (471.8080 without restraints) Performing minimization step: 2672. Total energy = 471.7288 kcal/mol (471.7182 without restraints) Performing minimization step: 2673. Total energy = 471.6391 kcal/mol (471.6285 without restraints) Performing minimization step: 2674. Total energy = 471.5495 kcal/mol (471.5389 without restraints) Performing minimization step: 2675. Total energy = 471.4600 kcal/mol (471.4495 without restraints) Performing minimization step: 2676. Total energy = 471.3706 kcal/mol (471.3601 without restraints) Performing minimization step: 2677. Total energy = 471.2814 kcal/mol (471.2708 without restraints) Performing minimization step: 2678. Total energy = 471.1922 kcal/mol (471.1817 without restraints) Performing minimization step: 2679. Total energy = 471.1031 kcal/mol (471.0926 without restraints) Performing minimization step: 2680. Total energy = 471.0141 kcal/mol (471.0037 without restraints) Performing minimization step: 2681. Total energy = 470.9252 kcal/mol (470.9148 without restraints) Performing minimization step: 2682. Total energy = 470.8365 kcal/mol (470.8260 without restraints) Performing minimization step: 2683. Total energy = 470.7478 kcal/mol (470.7374 without restraints) Performing minimization step: 2684. Total energy = 470.6593 kcal/mol (470.6488 without restraints) Performing minimization step: 2685. Total energy = 470.5711 kcal/mol (470.5606 without restraints) Performing minimization step: 2686. Total energy = 470.4825 kcal/mol (470.4721 without restraints) Performing minimization step: 2687. Total energy = 470.3943 kcal/mol (470.3839 without restraints) Performing minimization step: 2688. Total energy = 470.3062 kcal/mol (470.2958 without restraints) Performing minimization step: 2689. Total energy = 470.2181 kcal/mol (470.2077 without restraints) Performing minimization step: 2690. Total energy = 470.1302 kcal/mol (470.1198 without restraints) Performing minimization step: 2691. Total energy = 470.0424 kcal/mol (470.0320 without restraints) Performing minimization step: 2692. Total energy = 469.9547 kcal/mol (469.9445 without restraints) Performing minimization step: 2693. Total energy = 469.8672 kcal/mol (469.8569 without restraints) Performing minimization step: 2694. Total energy = 469.7793 kcal/mol (469.7690 without restraints) Performing minimization step: 2695. Total energy = 469.6919 kcal/mol (469.6816 without restraints) Performing minimization step: 2696. Total energy = 469.6045 kcal/mol (469.5942 without restraints) Performing minimization step: 2697. Total energy = 469.5173 kcal/mol (469.5070 without restraints) Performing minimization step: 2698. Total energy = 469.4302 kcal/mol (469.4199 without restraints) Performing minimization step: 2699. Total energy = 469.3432 kcal/mol (469.3329 without restraints) Performing minimization step: 2700. Total energy = 469.2563 kcal/mol (469.2461 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 469.1694 kcal/mol (469.1591 without restraints) Performing minimization step: 2702. Total energy = 469.0826 kcal/mol (469.0724 without restraints) Performing minimization step: 2703. Total energy = 468.9960 kcal/mol (468.9858 without restraints) Performing minimization step: 2704. Total energy = 468.9095 kcal/mol (468.8993 without restraints) Performing minimization step: 2705. Total energy = 468.8231 kcal/mol (468.8129 without restraints) Performing minimization step: 2706. Total energy = 468.7367 kcal/mol (468.7264 without restraints) Performing minimization step: 2707. Total energy = 468.6504 kcal/mol (468.6402 without restraints) Performing minimization step: 2708. Total energy = 468.5643 kcal/mol (468.5541 without restraints) Performing minimization step: 2709. Total energy = 468.4782 kcal/mol (468.4681 without restraints) Performing minimization step: 2710. Total energy = 468.3923 kcal/mol (468.3822 without restraints) Performing minimization step: 2711. Total energy = 468.3065 kcal/mol (468.2964 without restraints) Performing minimization step: 2712. Total energy = 468.2208 kcal/mol (468.2107 without restraints) Performing minimization step: 2713. Total energy = 468.1352 kcal/mol (468.1251 without restraints) Performing minimization step: 2714. Total energy = 468.0498 kcal/mol (468.0398 without restraints) Performing minimization step: 2715. Total energy = 467.9645 kcal/mol (467.9545 without restraints) Performing minimization step: 2716. Total energy = 467.8792 kcal/mol (467.8691 without restraints) Performing minimization step: 2717. Total energy = 467.7940 kcal/mol (467.7839 without restraints) Performing minimization step: 2718. Total energy = 467.7089 kcal/mol (467.6988 without restraints) Performing minimization step: 2719. Total energy = 467.6238 kcal/mol (467.6138 without restraints) Performing minimization step: 2720. Total energy = 467.5389 kcal/mol (467.5289 without restraints) Performing minimization step: 2721. Total energy = 467.4541 kcal/mol (467.4441 without restraints) Performing minimization step: 2722. Total energy = 467.3693 kcal/mol (467.3593 without restraints) Performing minimization step: 2723. Total energy = 467.2847 kcal/mol (467.2747 without restraints) Performing minimization step: 2724. Total energy = 467.2002 kcal/mol (467.1902 without restraints) Performing minimization step: 2725. Total energy = 467.1157 kcal/mol (467.1057 without restraints) Performing minimization step: 2726. Total energy = 467.0314 kcal/mol (467.0214 without restraints) Performing minimization step: 2727. Total energy = 466.9471 kcal/mol (466.9372 without restraints) Performing minimization step: 2728. Total energy = 466.8630 kcal/mol (466.8530 without restraints) Performing minimization step: 2729. Total energy = 466.7789 kcal/mol (466.7690 without restraints) Performing minimization step: 2730. Total energy = 466.6949 kcal/mol (466.6850 without restraints) Performing minimization step: 2731. Total energy = 466.6111 kcal/mol (466.6012 without restraints) Performing minimization step: 2732. Total energy = 466.5273 kcal/mol (466.5174 without restraints) Performing minimization step: 2733. Total energy = 466.4436 kcal/mol (466.4337 without restraints) Performing minimization step: 2734. Total energy = 466.3600 kcal/mol (466.3502 without restraints) Performing minimization step: 2735. Total energy = 466.2765 kcal/mol (466.2667 without restraints) Performing minimization step: 2736. Total energy = 466.1931 kcal/mol (466.1833 without restraints) Performing minimization step: 2737. Total energy = 466.1098 kcal/mol (466.1000 without restraints) Performing minimization step: 2738. Total energy = 466.0266 kcal/mol (466.0168 without restraints) Performing minimization step: 2739. Total energy = 465.9435 kcal/mol (465.9337 without restraints) Performing minimization step: 2740. Total energy = 465.8605 kcal/mol (465.8507 without restraints) Performing minimization step: 2741. Total energy = 465.7776 kcal/mol (465.7678 without restraints) Performing minimization step: 2742. Total energy = 465.6947 kcal/mol (465.6850 without restraints) Performing minimization step: 2743. Total energy = 465.6120 kcal/mol (465.6022 without restraints) Performing minimization step: 2744. Total energy = 465.5293 kcal/mol (465.5196 without restraints) Performing minimization step: 2745. Total energy = 465.4468 kcal/mol (465.4370 without restraints) Performing minimization step: 2746. Total energy = 465.3643 kcal/mol (465.3546 without restraints) Performing minimization step: 2747. Total energy = 465.2819 kcal/mol (465.2722 without restraints) Performing minimization step: 2748. Total energy = 465.1997 kcal/mol (465.1899 without restraints) Performing minimization step: 2749. Total energy = 465.1175 kcal/mol (465.1078 without restraints) Performing minimization step: 2750. Total energy = 465.0354 kcal/mol (465.0257 without restraints) Performing minimization step: 2751. Total energy = 464.9536 kcal/mol (464.9439 without restraints) Performing minimization step: 2752. Total energy = 464.8717 kcal/mol (464.8620 without restraints) Performing minimization step: 2753. Total energy = 464.7899 kcal/mol (464.7802 without restraints) Performing minimization step: 2754. Total energy = 464.7083 kcal/mol (464.6987 without restraints) Performing minimization step: 2755. Total energy = 464.6267 kcal/mol (464.6171 without restraints) Performing minimization step: 2756. Total energy = 464.5452 kcal/mol (464.5355 without restraints) Performing minimization step: 2757. Total energy = 464.4637 kcal/mol (464.4541 without restraints) Performing minimization step: 2758. Total energy = 464.3823 kcal/mol (464.3727 without restraints) Performing minimization step: 2759. Total energy = 464.3011 kcal/mol (464.2915 without restraints) Performing minimization step: 2760. Total energy = 464.2199 kcal/mol (464.2103 without restraints) Performing minimization step: 2761. Total energy = 464.1386 kcal/mol (464.1290 without restraints) Performing minimization step: 2762. Total energy = 464.0576 kcal/mol (464.0480 without restraints) Performing minimization step: 2763. Total energy = 463.9767 kcal/mol (463.9671 without restraints) Performing minimization step: 2764. Total energy = 463.8958 kcal/mol (463.8863 without restraints) Performing minimization step: 2765. Total energy = 463.8151 kcal/mol (463.8056 without restraints) Performing minimization step: 2766. Total energy = 463.7345 kcal/mol (463.7249 without restraints) Performing minimization step: 2767. Total energy = 463.6539 kcal/mol (463.6444 without restraints) Performing minimization step: 2768. Total energy = 463.5734 kcal/mol (463.5639 without restraints) Performing minimization step: 2769. Total energy = 463.4931 kcal/mol (463.4836 without restraints) Performing minimization step: 2770. Total energy = 463.4128 kcal/mol (463.4033 without restraints) Performing minimization step: 2771. Total energy = 463.3326 kcal/mol (463.3231 without restraints) Performing minimization step: 2772. Total energy = 463.2525 kcal/mol (463.2430 without restraints) Performing minimization step: 2773. Total energy = 463.1724 kcal/mol (463.1630 without restraints) Performing minimization step: 2774. Total energy = 463.0925 kcal/mol (463.0831 without restraints) Performing minimization step: 2775. Total energy = 463.0126 kcal/mol (463.0032 without restraints) Performing minimization step: 2776. Total energy = 462.9329 kcal/mol (462.9235 without restraints) Performing minimization step: 2777. Total energy = 462.8532 kcal/mol (462.8438 without restraints) Performing minimization step: 2778. Total energy = 462.7736 kcal/mol (462.7642 without restraints) Performing minimization step: 2779. Total energy = 462.6941 kcal/mol (462.6847 without restraints) Performing minimization step: 2780. Total energy = 462.6147 kcal/mol (462.6053 without restraints) Performing minimization step: 2781. Total energy = 462.5353 kcal/mol (462.5260 without restraints) Performing minimization step: 2782. Total energy = 462.4563 kcal/mol (462.4469 without restraints) Performing minimization step: 2783. Total energy = 462.3773 kcal/mol (462.3680 without restraints) Performing minimization step: 2784. Total energy = 462.2983 kcal/mol (462.2890 without restraints) Performing minimization step: 2785. Total energy = 462.2194 kcal/mol (462.2100 without restraints) Performing minimization step: 2786. Total energy = 462.1405 kcal/mol (462.1312 without restraints) Performing minimization step: 2787. Total energy = 462.0617 kcal/mol (462.0524 without restraints) Performing minimization step: 2788. Total energy = 461.9829 kcal/mol (461.9736 without restraints) Performing minimization step: 2789. Total energy = 461.9043 kcal/mol (461.8950 without restraints) Performing minimization step: 2790. Total energy = 461.8255 kcal/mol (461.8163 without restraints) Performing minimization step: 2791. Total energy = 461.7471 kcal/mol (461.7378 without restraints) Performing minimization step: 2792. Total energy = 461.6687 kcal/mol (461.6594 without restraints) Performing minimization step: 2793. Total energy = 461.5904 kcal/mol (461.5811 without restraints) Performing minimization step: 2794. Total energy = 461.5122 kcal/mol (461.5029 without restraints) Performing minimization step: 2795. Total energy = 461.4340 kcal/mol (461.4248 without restraints) Performing minimization step: 2796. Total energy = 461.3560 kcal/mol (461.3468 without restraints) Performing minimization step: 2797. Total energy = 461.2780 kcal/mol (461.2688 without restraints) Performing minimization step: 2798. Total energy = 461.2002 kcal/mol (461.1910 without restraints) Performing minimization step: 2799. Total energy = 461.1224 kcal/mol (461.1132 without restraints) Performing minimization step: 2800. Total energy = 461.0447 kcal/mol (461.0355 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 460.9671 kcal/mol (460.9579 without restraints) Performing minimization step: 2802. Total energy = 460.8895 kcal/mol (460.8804 without restraints) Performing minimization step: 2803. Total energy = 460.8121 kcal/mol (460.8029 without restraints) Performing minimization step: 2804. Total energy = 460.7347 kcal/mol (460.7256 without restraints) Performing minimization step: 2805. Total energy = 460.6574 kcal/mol (460.6483 without restraints) Performing minimization step: 2806. Total energy = 460.5802 kcal/mol (460.5711 without restraints) Performing minimization step: 2807. Total energy = 460.5031 kcal/mol (460.4940 without restraints) Performing minimization step: 2808. Total energy = 460.4260 kcal/mol (460.4169 without restraints) Performing minimization step: 2809. Total energy = 460.3491 kcal/mol (460.3400 without restraints) Performing minimization step: 2810. Total energy = 460.2722 kcal/mol (460.2631 without restraints) Performing minimization step: 2811. Total energy = 460.1954 kcal/mol (460.1863 without restraints) Performing minimization step: 2812. Total energy = 460.1187 kcal/mol (460.1096 without restraints) Performing minimization step: 2813. Total energy = 460.0420 kcal/mol (460.0330 without restraints) Performing minimization step: 2814. Total energy = 459.9655 kcal/mol (459.9564 without restraints) Performing minimization step: 2815. Total energy = 459.8890 kcal/mol (459.8800 without restraints) Performing minimization step: 2816. Total energy = 459.8126 kcal/mol (459.8036 without restraints) Performing minimization step: 2817. Total energy = 459.7363 kcal/mol (459.7273 without restraints) Performing minimization step: 2818. Total energy = 459.6601 kcal/mol (459.6511 without restraints) Performing minimization step: 2819. Total energy = 459.5840 kcal/mol (459.5750 without restraints) Performing minimization step: 2820. Total energy = 459.5079 kcal/mol (459.4989 without restraints) Performing minimization step: 2821. Total energy = 459.4319 kcal/mol (459.4229 without restraints) Performing minimization step: 2822. Total energy = 459.3560 kcal/mol (459.3470 without restraints) Performing minimization step: 2823. Total energy = 459.2799 kcal/mol (459.2710 without restraints) Performing minimization step: 2824. Total energy = 459.2042 kcal/mol (459.1952 without restraints) Performing minimization step: 2825. Total energy = 459.1285 kcal/mol (459.1196 without restraints) Performing minimization step: 2826. Total energy = 459.0529 kcal/mol (459.0440 without restraints) Performing minimization step: 2827. Total energy = 458.9774 kcal/mol (458.9685 without restraints) Performing minimization step: 2828. Total energy = 458.9020 kcal/mol (458.8931 without restraints) Performing minimization step: 2829. Total energy = 458.8266 kcal/mol (458.8177 without restraints) Performing minimization step: 2830. Total energy = 458.7514 kcal/mol (458.7425 without restraints) Performing minimization step: 2831. Total energy = 458.6762 kcal/mol (458.6673 without restraints) Performing minimization step: 2832. Total energy = 458.6010 kcal/mol (458.5922 without restraints) Performing minimization step: 2833. Total energy = 458.5260 kcal/mol (458.5172 without restraints) Performing minimization step: 2834. Total energy = 458.4510 kcal/mol (458.4422 without restraints) Performing minimization step: 2835. Total energy = 458.3761 kcal/mol (458.3672 without restraints) Performing minimization step: 2836. Total energy = 458.3012 kcal/mol (458.2924 without restraints) Performing minimization step: 2837. Total energy = 458.2265 kcal/mol (458.2177 without restraints) Performing minimization step: 2838. Total energy = 458.1518 kcal/mol (458.1430 without restraints) Performing minimization step: 2839. Total energy = 458.0772 kcal/mol (458.0685 without restraints) Performing minimization step: 2840. Total energy = 458.0028 kcal/mol (457.9940 without restraints) Performing minimization step: 2841. Total energy = 457.9283 kcal/mol (457.9196 without restraints) Performing minimization step: 2842. Total energy = 457.8538 kcal/mol (457.8450 without restraints) Performing minimization step: 2843. Total energy = 457.7795 kcal/mol (457.7708 without restraints) Performing minimization step: 2844. Total energy = 457.7053 kcal/mol (457.6966 without restraints) Performing minimization step: 2845. Total energy = 457.6312 kcal/mol (457.6225 without restraints) Performing minimization step: 2846. Total energy = 457.5572 kcal/mol (457.5485 without restraints) Performing minimization step: 2847. Total energy = 457.4832 kcal/mol (457.4745 without restraints) Performing minimization step: 2848. Total energy = 457.4094 kcal/mol (457.4007 without restraints) Performing minimization step: 2849. Total energy = 457.3356 kcal/mol (457.3269 without restraints) Performing minimization step: 2850. Total energy = 457.2619 kcal/mol (457.2532 without restraints) Performing minimization step: 2851. Total energy = 457.1884 kcal/mol (457.1796 without restraints) Performing minimization step: 2852. Total energy = 457.1147 kcal/mol (457.1060 without restraints) Performing minimization step: 2853. Total energy = 457.0412 kcal/mol (457.0325 without restraints) Performing minimization step: 2854. Total energy = 456.9678 kcal/mol (456.9591 without restraints) Performing minimization step: 2855. Total energy = 456.8945 kcal/mol (456.8858 without restraints) Performing minimization step: 2856. Total energy = 456.8212 kcal/mol (456.8126 without restraints) Performing minimization step: 2857. Total energy = 456.7480 kcal/mol (456.7394 without restraints) Performing minimization step: 2858. Total energy = 456.6749 kcal/mol (456.6663 without restraints) Performing minimization step: 2859. Total energy = 456.6018 kcal/mol (456.5932 without restraints) Performing minimization step: 2860. Total energy = 456.5288 kcal/mol (456.5202 without restraints) Performing minimization step: 2861. Total energy = 456.4559 kcal/mol (456.4473 without restraints) Performing minimization step: 2862. Total energy = 456.3831 kcal/mol (456.3745 without restraints) Performing minimization step: 2863. Total energy = 456.3104 kcal/mol (456.3018 without restraints) Performing minimization step: 2864. Total energy = 456.2377 kcal/mol (456.2291 without restraints) Performing minimization step: 2865. Total energy = 456.1651 kcal/mol (456.1565 without restraints) Performing minimization step: 2866. Total energy = 456.0925 kcal/mol (456.0840 without restraints) Performing minimization step: 2867. Total energy = 456.0203 kcal/mol (456.0117 without restraints) Performing minimization step: 2868. Total energy = 455.9479 kcal/mol (455.9393 without restraints) Performing minimization step: 2869. Total energy = 455.8756 kcal/mol (455.8670 without restraints) Performing minimization step: 2870. Total energy = 455.8033 kcal/mol (455.7948 without restraints) Performing minimization step: 2871. Total energy = 455.7312 kcal/mol (455.7227 without restraints) Performing minimization step: 2872. Total energy = 455.6590 kcal/mol (455.6505 without restraints) Performing minimization step: 2873. Total energy = 455.5870 kcal/mol (455.5785 without restraints) Performing minimization step: 2874. Total energy = 455.5153 kcal/mol (455.5068 without restraints) Performing minimization step: 2875. Total energy = 455.4434 kcal/mol (455.4349 without restraints) Performing minimization step: 2876. Total energy = 455.3716 kcal/mol (455.3631 without restraints) Performing minimization step: 2877. Total energy = 455.2998 kcal/mol (455.2914 without restraints) Performing minimization step: 2878. Total energy = 455.2282 kcal/mol (455.2197 without restraints) Performing minimization step: 2879. Total energy = 455.1566 kcal/mol (455.1481 without restraints) Performing minimization step: 2880. Total energy = 455.0851 kcal/mol (455.0766 without restraints) Performing minimization step: 2881. Total energy = 455.0136 kcal/mol (455.0052 without restraints) Performing minimization step: 2882. Total energy = 454.9423 kcal/mol (454.9338 without restraints) Performing minimization step: 2883. Total energy = 454.8710 kcal/mol (454.8625 without restraints) Performing minimization step: 2884. Total energy = 454.7997 kcal/mol (454.7913 without restraints) Performing minimization step: 2885. Total energy = 454.7286 kcal/mol (454.7202 without restraints) Performing minimization step: 2886. Total energy = 454.6575 kcal/mol (454.6491 without restraints) Performing minimization step: 2887. Total energy = 454.5865 kcal/mol (454.5781 without restraints) Performing minimization step: 2888. Total energy = 454.5155 kcal/mol (454.5072 without restraints) Performing minimization step: 2889. Total energy = 454.4447 kcal/mol (454.4363 without restraints) Performing minimization step: 2890. Total energy = 454.3739 kcal/mol (454.3655 without restraints) Performing minimization step: 2891. Total energy = 454.3031 kcal/mol (454.2948 without restraints) Performing minimization step: 2892. Total energy = 454.2324 kcal/mol (454.2241 without restraints) Performing minimization step: 2893. Total energy = 454.1618 kcal/mol (454.1535 without restraints) Performing minimization step: 2894. Total energy = 454.0913 kcal/mol (454.0830 without restraints) Performing minimization step: 2895. Total energy = 454.0209 kcal/mol (454.0125 without restraints) Performing minimization step: 2896. Total energy = 453.9505 kcal/mol (453.9422 without restraints) Performing minimization step: 2897. Total energy = 453.8801 kcal/mol (453.8718 without restraints) Performing minimization step: 2898. Total energy = 453.8099 kcal/mol (453.8016 without restraints) Performing minimization step: 2899. Total energy = 453.7397 kcal/mol (453.7314 without restraints) Performing minimization step: 2900. Total energy = 453.6695 kcal/mol (453.6613 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 453.5995 kcal/mol (453.5912 without restraints) Performing minimization step: 2902. Total energy = 453.5295 kcal/mol (453.5213 without restraints) Performing minimization step: 2903. Total energy = 453.4596 kcal/mol (453.4514 without restraints) Performing minimization step: 2904. Total energy = 453.3898 kcal/mol (453.3815 without restraints) Performing minimization step: 2905. Total energy = 453.3198 kcal/mol (453.3116 without restraints) Performing minimization step: 2906. Total energy = 453.2501 kcal/mol (453.2419 without restraints) Performing minimization step: 2907. Total energy = 453.1805 kcal/mol (453.1722 without restraints) Performing minimization step: 2908. Total energy = 453.1109 kcal/mol (453.1027 without restraints) Performing minimization step: 2909. Total energy = 453.0414 kcal/mol (453.0332 without restraints) Performing minimization step: 2910. Total energy = 452.9719 kcal/mol (452.9638 without restraints) Performing minimization step: 2911. Total energy = 452.9026 kcal/mol (452.8944 without restraints) Performing minimization step: 2912. Total energy = 452.8333 kcal/mol (452.8251 without restraints) Performing minimization step: 2913. Total energy = 452.7640 kcal/mol (452.7559 without restraints) Performing minimization step: 2914. Total energy = 452.6949 kcal/mol (452.6867 without restraints) Performing minimization step: 2915. Total energy = 452.6258 kcal/mol (452.6176 without restraints) Performing minimization step: 2916. Total energy = 452.5568 kcal/mol (452.5486 without restraints) Performing minimization step: 2917. Total energy = 452.4878 kcal/mol (452.4797 without restraints) Performing minimization step: 2918. Total energy = 452.4189 kcal/mol (452.4108 without restraints) Performing minimization step: 2919. Total energy = 452.3501 kcal/mol (452.3420 without restraints) Performing minimization step: 2920. Total energy = 452.2813 kcal/mol (452.2732 without restraints) Performing minimization step: 2921. Total energy = 452.2124 kcal/mol (452.2043 without restraints) Performing minimization step: 2922. Total energy = 452.1438 kcal/mol (452.1357 without restraints) Performing minimization step: 2923. Total energy = 452.0752 kcal/mol (452.0671 without restraints) Performing minimization step: 2924. Total energy = 452.0067 kcal/mol (451.9986 without restraints) Performing minimization step: 2925. Total energy = 451.9383 kcal/mol (451.9302 without restraints) Performing minimization step: 2926. Total energy = 451.8699 kcal/mol (451.8618 without restraints) Performing minimization step: 2927. Total energy = 451.8016 kcal/mol (451.7935 without restraints) Performing minimization step: 2928. Total energy = 451.7333 kcal/mol (451.7253 without restraints) Performing minimization step: 2929. Total energy = 451.6652 kcal/mol (451.6571 without restraints) Performing minimization step: 2930. Total energy = 451.5970 kcal/mol (451.5890 without restraints) Performing minimization step: 2931. Total energy = 451.5290 kcal/mol (451.5210 without restraints) Performing minimization step: 2932. Total energy = 451.4610 kcal/mol (451.4529 without restraints) Performing minimization step: 2933. Total energy = 451.3930 kcal/mol (451.3850 without restraints) Performing minimization step: 2934. Total energy = 451.3252 kcal/mol (451.3172 without restraints) Performing minimization step: 2935. Total energy = 451.2574 kcal/mol (451.2494 without restraints) Performing minimization step: 2936. Total energy = 451.1897 kcal/mol (451.1817 without restraints) Performing minimization step: 2937. Total energy = 451.1220 kcal/mol (451.1140 without restraints) Performing minimization step: 2938. Total energy = 451.0544 kcal/mol (451.0464 without restraints) Performing minimization step: 2939. Total energy = 450.9869 kcal/mol (450.9789 without restraints) Performing minimization step: 2940. Total energy = 450.9194 kcal/mol (450.9114 without restraints) Performing minimization step: 2941. Total energy = 450.8520 kcal/mol (450.8440 without restraints) Performing minimization step: 2942. Total energy = 450.7846 kcal/mol (450.7767 without restraints) Performing minimization step: 2943. Total energy = 450.7173 kcal/mol (450.7094 without restraints) Performing minimization step: 2944. Total energy = 450.6501 kcal/mol (450.6422 without restraints) Performing minimization step: 2945. Total energy = 450.5830 kcal/mol (450.5750 without restraints) Performing minimization step: 2946. Total energy = 450.5159 kcal/mol (450.5080 without restraints) Performing minimization step: 2947. Total energy = 450.4488 kcal/mol (450.4409 without restraints) Performing minimization step: 2948. Total energy = 450.3819 kcal/mol (450.3740 without restraints) Performing minimization step: 2949. Total energy = 450.3150 kcal/mol (450.3071 without restraints) Performing minimization step: 2950. Total energy = 450.2481 kcal/mol (450.2402 without restraints) Performing minimization step: 2951. Total energy = 450.1813 kcal/mol (450.1735 without restraints) Performing minimization step: 2952. Total energy = 450.1146 kcal/mol (450.1067 without restraints) Performing minimization step: 2953. Total energy = 450.0479 kcal/mol (450.0401 without restraints) Performing minimization step: 2954. Total energy = 449.9814 kcal/mol (449.9735 without restraints) Performing minimization step: 2955. Total energy = 449.9148 kcal/mol (449.9070 without restraints) Performing minimization step: 2956. Total energy = 449.8483 kcal/mol (449.8405 without restraints) Performing minimization step: 2957. Total energy = 449.7822 kcal/mol (449.7743 without restraints) Performing minimization step: 2958. Total energy = 449.7158 kcal/mol (449.7080 without restraints) Performing minimization step: 2959. Total energy = 449.6495 kcal/mol (449.6417 without restraints) Performing minimization step: 2960. Total energy = 449.5833 kcal/mol (449.5755 without restraints) Performing minimization step: 2961. Total energy = 449.5171 kcal/mol (449.5093 without restraints) Performing minimization step: 2962. Total energy = 449.4510 kcal/mol (449.4432 without restraints) Performing minimization step: 2963. Total energy = 449.3850 kcal/mol (449.3772 without restraints) Performing minimization step: 2964. Total energy = 449.3190 kcal/mol (449.3112 without restraints) Performing minimization step: 2965. Total energy = 449.2531 kcal/mol (449.2453 without restraints) Performing minimization step: 2966. Total energy = 449.1870 kcal/mol (449.1792 without restraints) Performing minimization step: 2967. Total energy = 449.1212 kcal/mol (449.1134 without restraints) Performing minimization step: 2968. Total energy = 449.0553 kcal/mol (449.0475 without restraints) Performing minimization step: 2969. Total energy = 448.9896 kcal/mol (448.9818 without restraints) Performing minimization step: 2970. Total energy = 448.9240 kcal/mol (448.9163 without restraints) Performing minimization step: 2971. Total energy = 448.8584 kcal/mol (448.8507 without restraints) Performing minimization step: 2972. Total energy = 448.7929 kcal/mol (448.7852 without restraints) Performing minimization step: 2973. Total energy = 448.7274 kcal/mol (448.7196 without restraints) Performing minimization step: 2974. Total energy = 448.6617 kcal/mol (448.6540 without restraints) Performing minimization step: 2975. Total energy = 448.5964 kcal/mol (448.5887 without restraints) Performing minimization step: 2976. Total energy = 448.5311 kcal/mol (448.5234 without restraints) Performing minimization step: 2977. Total energy = 448.4659 kcal/mol (448.4582 without restraints) Performing minimization step: 2978. Total energy = 448.4007 kcal/mol (448.3931 without restraints) Performing minimization step: 2979. Total energy = 448.3357 kcal/mol (448.3280 without restraints) Performing minimization step: 2980. Total energy = 448.2706 kcal/mol (448.2630 without restraints) Performing minimization step: 2981. Total energy = 448.2057 kcal/mol (448.1980 without restraints) Performing minimization step: 2982. Total energy = 448.1407 kcal/mol (448.1331 without restraints) Performing minimization step: 2983. Total energy = 448.0760 kcal/mol (448.0684 without restraints) Performing minimization step: 2984. Total energy = 448.0112 kcal/mol (448.0036 without restraints) Performing minimization step: 2985. Total energy = 447.9465 kcal/mol (447.9388 without restraints) Performing minimization step: 2986. Total energy = 447.8818 kcal/mol (447.8742 without restraints) Performing minimization step: 2987. Total energy = 447.8172 kcal/mol (447.8095 without restraints) Performing minimization step: 2988. Total energy = 447.7526 kcal/mol (447.7450 without restraints) Performing minimization step: 2989. Total energy = 447.6881 kcal/mol (447.6805 without restraints) Performing minimization step: 2990. Total energy = 447.6236 kcal/mol (447.6160 without restraints) Performing minimization step: 2991. Total energy = 447.5592 kcal/mol (447.5516 without restraints) Performing minimization step: 2992. Total energy = 447.4949 kcal/mol (447.4873 without restraints) Performing minimization step: 2993. Total energy = 447.4306 kcal/mol (447.4230 without restraints) Performing minimization step: 2994. Total energy = 447.3664 kcal/mol (447.3588 without restraints) Performing minimization step: 2995. Total energy = 447.3022 kcal/mol (447.2946 without restraints) Performing minimization step: 2996. Total energy = 447.2381 kcal/mol (447.2305 without restraints) Performing minimization step: 2997. Total energy = 447.1741 kcal/mol (447.1667 without restraints) Performing minimization step: 2998. Total energy = 447.1102 kcal/mol (447.1027 without restraints) Performing minimization step: 2999. Total energy = 447.0463 kcal/mol (447.0388 without restraints) Performing minimization step: 3000. Total energy = 446.9824 kcal/mol (446.9749 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 446.9186 kcal/mol (446.9111 without restraints) Performing minimization step: 3002. Total energy = 446.8548 kcal/mol (446.8473 without restraints) Performing minimization step: 3003. Total energy = 446.7911 kcal/mol (446.7836 without restraints) Performing minimization step: 3004. Total energy = 446.7274 kcal/mol (446.7199 without restraints) Performing minimization step: 3005. Total energy = 446.6638 kcal/mol (446.6563 without restraints) Performing minimization step: 3006. Total energy = 446.6003 kcal/mol (446.5928 without restraints) Performing minimization step: 3007. Total energy = 446.5368 kcal/mol (446.5293 without restraints) Performing minimization step: 3008. Total energy = 446.4733 kcal/mol (446.4658 without restraints) Performing minimization step: 3009. Total energy = 446.4099 kcal/mol (446.4025 without restraints) Performing minimization step: 3010. Total energy = 446.3466 kcal/mol (446.3391 without restraints) Performing minimization step: 3011. Total energy = 446.2833 kcal/mol (446.2759 without restraints) Performing minimization step: 3012. Total energy = 446.2201 kcal/mol (446.2126 without restraints) Performing minimization step: 3013. Total energy = 446.1569 kcal/mol (446.1495 without restraints) Performing minimization step: 3014. Total energy = 446.0940 kcal/mol (446.0866 without restraints) Performing minimization step: 3015. Total energy = 446.0310 kcal/mol (446.0235 without restraints) Performing minimization step: 3016. Total energy = 445.9680 kcal/mol (445.9606 without restraints) Performing minimization step: 3017. Total energy = 445.9051 kcal/mol (445.8977 without restraints) Performing minimization step: 3018. Total energy = 445.8422 kcal/mol (445.8348 without restraints) Performing minimization step: 3019. Total energy = 445.7794 kcal/mol (445.7719 without restraints) Performing minimization step: 3020. Total energy = 445.7166 kcal/mol (445.7092 without restraints) Performing minimization step: 3021. Total energy = 445.6538 kcal/mol (445.6464 without restraints) Performing minimization step: 3022. Total energy = 445.5912 kcal/mol (445.5838 without restraints) Performing minimization step: 3023. Total energy = 445.5285 kcal/mol (445.5211 without restraints) Performing minimization step: 3024. Total energy = 445.4660 kcal/mol (445.4586 without restraints) Performing minimization step: 3025. Total energy = 445.4036 kcal/mol (445.3963 without restraints) Performing minimization step: 3026. Total energy = 445.3412 kcal/mol (445.3338 without restraints) Performing minimization step: 3027. Total energy = 445.2788 kcal/mol (445.2714 without restraints) Performing minimization step: 3028. Total energy = 445.2164 kcal/mol (445.2091 without restraints) Performing minimization step: 3029. Total energy = 445.1541 kcal/mol (445.1467 without restraints) Performing minimization step: 3030. Total energy = 445.0918 kcal/mol (445.0845 without restraints) Performing minimization step: 3031. Total energy = 445.0296 kcal/mol (445.0223 without restraints) Performing minimization step: 3032. Total energy = 444.9675 kcal/mol (444.9601 without restraints) Performing minimization step: 3033. Total energy = 444.9054 kcal/mol (444.8981 without restraints) Performing minimization step: 3034. Total energy = 444.8433 kcal/mol (444.8360 without restraints) Performing minimization step: 3035. Total energy = 444.7813 kcal/mol (444.7740 without restraints) Performing minimization step: 3036. Total energy = 444.7194 kcal/mol (444.7121 without restraints) Performing minimization step: 3037. Total energy = 444.6575 kcal/mol (444.6502 without restraints) Performing minimization step: 3038. Total energy = 444.5957 kcal/mol (444.5884 without restraints) Performing minimization step: 3039. Total energy = 444.5339 kcal/mol (444.5266 without restraints) Performing minimization step: 3040. Total energy = 444.4722 kcal/mol (444.4649 without restraints) Performing minimization step: 3041. Total energy = 444.4105 kcal/mol (444.4032 without restraints) Performing minimization step: 3042. Total energy = 444.3489 kcal/mol (444.3416 without restraints) Performing minimization step: 3043. Total energy = 444.2873 kcal/mol (444.2801 without restraints) Performing minimization step: 3044. Total energy = 444.2258 kcal/mol (444.2186 without restraints) Performing minimization step: 3045. Total energy = 444.1643 kcal/mol (444.1571 without restraints) Performing minimization step: 3046. Total energy = 444.1029 kcal/mol (444.0957 without restraints) Performing minimization step: 3047. Total energy = 444.0415 kcal/mol (444.0343 without restraints) Performing minimization step: 3048. Total energy = 443.9802 kcal/mol (443.9730 without restraints) Performing minimization step: 3049. Total energy = 443.9190 kcal/mol (443.9117 without restraints) Performing minimization step: 3050. Total energy = 443.8577 kcal/mol (443.8505 without restraints) Performing minimization step: 3051. Total energy = 443.7965 kcal/mol (443.7893 without restraints) Performing minimization step: 3052. Total energy = 443.7354 kcal/mol (443.7282 without restraints) Performing minimization step: 3053. Total energy = 443.6744 kcal/mol (443.6672 without restraints) Performing minimization step: 3054. Total energy = 443.6133 kcal/mol (443.6061 without restraints) Performing minimization step: 3055. Total energy = 443.5524 kcal/mol (443.5452 without restraints) Performing minimization step: 3056. Total energy = 443.4915 kcal/mol (443.4843 without restraints) Performing minimization step: 3057. Total energy = 443.4304 kcal/mol (443.4232 without restraints) Performing minimization step: 3058. Total energy = 443.3697 kcal/mol (443.3626 without restraints) Performing minimization step: 3059. Total energy = 443.3089 kcal/mol (443.3018 without restraints) Performing minimization step: 3060. Total energy = 443.2482 kcal/mol (443.2411 without restraints) Performing minimization step: 3061. Total energy = 443.1876 kcal/mol (443.1804 without restraints) Performing minimization step: 3062. Total energy = 443.1269 kcal/mol (443.1198 without restraints) Performing minimization step: 3063. Total energy = 443.0664 kcal/mol (443.0592 without restraints) Performing minimization step: 3064. Total energy = 443.0058 kcal/mol (442.9987 without restraints) Performing minimization step: 3065. Total energy = 442.9454 kcal/mol (442.9382 without restraints) Performing minimization step: 3066. Total energy = 442.8849 kcal/mol (442.8778 without restraints) Performing minimization step: 3067. Total energy = 442.8246 kcal/mol (442.8174 without restraints) Performing minimization step: 3068. Total energy = 442.7642 kcal/mol (442.7571 without restraints) Performing minimization step: 3069. Total energy = 442.7040 kcal/mol (442.6969 without restraints) Performing minimization step: 3070. Total energy = 442.6438 kcal/mol (442.6367 without restraints) Performing minimization step: 3071. Total energy = 442.5836 kcal/mol (442.5765 without restraints) Performing minimization step: 3072. Total energy = 442.5235 kcal/mol (442.5164 without restraints) Performing minimization step: 3073. Total energy = 442.4634 kcal/mol (442.4563 without restraints) Performing minimization step: 3074. Total energy = 442.4031 kcal/mol (442.3960 without restraints) Performing minimization step: 3075. Total energy = 442.3431 kcal/mol (442.3361 without restraints) Performing minimization step: 3076. Total energy = 442.2832 kcal/mol (442.2761 without restraints) Performing minimization step: 3077. Total energy = 442.2233 kcal/mol (442.2163 without restraints) Performing minimization step: 3078. Total energy = 442.1635 kcal/mol (442.1564 without restraints) Performing minimization step: 3079. Total energy = 442.1037 kcal/mol (442.0967 without restraints) Performing minimization step: 3080. Total energy = 442.0440 kcal/mol (442.0369 without restraints) Performing minimization step: 3081. Total energy = 441.9843 kcal/mol (441.9772 without restraints) Performing minimization step: 3082. Total energy = 441.9246 kcal/mol (441.9176 without restraints) Performing minimization step: 3083. Total energy = 441.8650 kcal/mol (441.8580 without restraints) Performing minimization step: 3084. Total energy = 441.8057 kcal/mol (441.7987 without restraints) Performing minimization step: 3085. Total energy = 441.7460 kcal/mol (441.7390 without restraints) Performing minimization step: 3086. Total energy = 441.6865 kcal/mol (441.6795 without restraints) Performing minimization step: 3087. Total energy = 441.6272 kcal/mol (441.6201 without restraints) Performing minimization step: 3088. Total energy = 441.5678 kcal/mol (441.5608 without restraints) Performing minimization step: 3089. Total energy = 441.5085 kcal/mol (441.5015 without restraints) Performing minimization step: 3090. Total energy = 441.4492 kcal/mol (441.4422 without restraints) Performing minimization step: 3091. Total energy = 441.3898 kcal/mol (441.3828 without restraints) Performing minimization step: 3092. Total energy = 441.3306 kcal/mol (441.3237 without restraints) Performing minimization step: 3093. Total energy = 441.2715 kcal/mol (441.2645 without restraints) Performing minimization step: 3094. Total energy = 441.2126 kcal/mol (441.2056 without restraints) Performing minimization step: 3095. Total energy = 441.1534 kcal/mol (441.1465 without restraints) Performing minimization step: 3096. Total energy = 441.0944 kcal/mol (441.0875 without restraints) Performing minimization step: 3097. Total energy = 441.0357 kcal/mol (441.0287 without restraints) Performing minimization step: 3098. Total energy = 440.9768 kcal/mol (440.9699 without restraints) Performing minimization step: 3099. Total energy = 440.9180 kcal/mol (440.9110 without restraints) Performing minimization step: 3100. Total energy = 440.8592 kcal/mol (440.8522 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 440.8004 kcal/mol (440.7935 without restraints) Performing minimization step: 3102. Total energy = 440.7417 kcal/mol (440.7348 without restraints) Performing minimization step: 3103. Total energy = 440.6830 kcal/mol (440.6761 without restraints) Performing minimization step: 3104. Total energy = 440.6244 kcal/mol (440.6175 without restraints) Performing minimization step: 3105. Total energy = 440.5658 kcal/mol (440.5589 without restraints) Performing minimization step: 3106. Total energy = 440.5073 kcal/mol (440.5004 without restraints) Performing minimization step: 3107. Total energy = 440.4488 kcal/mol (440.4419 without restraints) Performing minimization step: 3108. Total energy = 440.3904 kcal/mol (440.3835 without restraints) Performing minimization step: 3109. Total energy = 440.3320 kcal/mol (440.3251 without restraints) Performing minimization step: 3110. Total energy = 440.2737 kcal/mol (440.2668 without restraints) Performing minimization step: 3111. Total energy = 440.2154 kcal/mol (440.2085 without restraints) Performing minimization step: 3112. Total energy = 440.1571 kcal/mol (440.1502 without restraints) Performing minimization step: 3113. Total energy = 440.0989 kcal/mol (440.0920 without restraints) Performing minimization step: 3114. Total energy = 440.0407 kcal/mol (440.0339 without restraints) Performing minimization step: 3115. Total energy = 439.9825 kcal/mol (439.9757 without restraints) Performing minimization step: 3116. Total energy = 439.9245 kcal/mol (439.9176 without restraints) Performing minimization step: 3117. Total energy = 439.8664 kcal/mol (439.8596 without restraints) Performing minimization step: 3118. Total energy = 439.8084 kcal/mol (439.8016 without restraints) Performing minimization step: 3119. Total energy = 439.7505 kcal/mol (439.7437 without restraints) Performing minimization step: 3120. Total energy = 439.6926 kcal/mol (439.6858 without restraints) Performing minimization step: 3121. Total energy = 439.6346 kcal/mol (439.6277 without restraints) Performing minimization step: 3122. Total energy = 439.5767 kcal/mol (439.5699 without restraints) Performing minimization step: 3123. Total energy = 439.5190 kcal/mol (439.5122 without restraints) Performing minimization step: 3124. Total energy = 439.4613 kcal/mol (439.4545 without restraints) Performing minimization step: 3125. Total energy = 439.4036 kcal/mol (439.3968 without restraints) Performing minimization step: 3126. Total energy = 439.3460 kcal/mol (439.3392 without restraints) Performing minimization step: 3127. Total energy = 439.2885 kcal/mol (439.2818 without restraints) Performing minimization step: 3128. Total energy = 439.2310 kcal/mol (439.2242 without restraints) Performing minimization step: 3129. Total energy = 439.1735 kcal/mol (439.1667 without restraints) Performing minimization step: 3130. Total energy = 439.1158 kcal/mol (439.1091 without restraints) Performing minimization step: 3131. Total energy = 439.0584 kcal/mol (439.0516 without restraints) Performing minimization step: 3132. Total energy = 439.0010 kcal/mol (438.9943 without restraints) Performing minimization step: 3133. Total energy = 438.9437 kcal/mol (438.9369 without restraints) Performing minimization step: 3134. Total energy = 438.8864 kcal/mol (438.8797 without restraints) Performing minimization step: 3135. Total energy = 438.8292 kcal/mol (438.8224 without restraints) Performing minimization step: 3136. Total energy = 438.7720 kcal/mol (438.7652 without restraints) Performing minimization step: 3137. Total energy = 438.7148 kcal/mol (438.7081 without restraints) Performing minimization step: 3138. Total energy = 438.6577 kcal/mol (438.6509 without restraints) Performing minimization step: 3139. Total energy = 438.6006 kcal/mol (438.5939 without restraints) Performing minimization step: 3140. Total energy = 438.5436 kcal/mol (438.5368 without restraints) Performing minimization step: 3141. Total energy = 438.4866 kcal/mol (438.4798 without restraints) Performing minimization step: 3142. Total energy = 438.4296 kcal/mol (438.4229 without restraints) Performing minimization step: 3143. Total energy = 438.3727 kcal/mol (438.3660 without restraints) Performing minimization step: 3144. Total energy = 438.3154 kcal/mol (438.3087 without restraints) Performing minimization step: 3145. Total energy = 438.2586 kcal/mol (438.2520 without restraints) Performing minimization step: 3146. Total energy = 438.2019 kcal/mol (438.1952 without restraints) Performing minimization step: 3147. Total energy = 438.1452 kcal/mol (438.1385 without restraints) Performing minimization step: 3148. Total energy = 438.0885 kcal/mol (438.0818 without restraints) Performing minimization step: 3149. Total energy = 438.0318 kcal/mol (438.0251 without restraints) Performing minimization step: 3150. Total energy = 437.9752 kcal/mol (437.9685 without restraints) Performing minimization step: 3151. Total energy = 437.9186 kcal/mol (437.9120 without restraints) Performing minimization step: 3152. Total energy = 437.8621 kcal/mol (437.8554 without restraints) Performing minimization step: 3153. Total energy = 437.8058 kcal/mol (437.7992 without restraints) Performing minimization step: 3154. Total energy = 437.7494 kcal/mol (437.7427 without restraints) Performing minimization step: 3155. Total energy = 437.6930 kcal/mol (437.6863 without restraints) Performing minimization step: 3156. Total energy = 437.6366 kcal/mol (437.6300 without restraints) Performing minimization step: 3157. Total energy = 437.5803 kcal/mol (437.5736 without restraints) Performing minimization step: 3158. Total energy = 437.5240 kcal/mol (437.5173 without restraints) Performing minimization step: 3159. Total energy = 437.4677 kcal/mol (437.4611 without restraints) Performing minimization step: 3160. Total energy = 437.4115 kcal/mol (437.4049 without restraints) Performing minimization step: 3161. Total energy = 437.3554 kcal/mol (437.3487 without restraints) Performing minimization step: 3162. Total energy = 437.2992 kcal/mol (437.2926 without restraints) Performing minimization step: 3163. Total energy = 437.2431 kcal/mol (437.2365 without restraints) Performing minimization step: 3164. Total energy = 437.1871 kcal/mol (437.1804 without restraints) Performing minimization step: 3165. Total energy = 437.1311 kcal/mol (437.1245 without restraints) Performing minimization step: 3166. Total energy = 437.0751 kcal/mol (437.0685 without restraints) Performing minimization step: 3167. Total energy = 437.0192 kcal/mol (437.0126 without restraints) Performing minimization step: 3168. Total energy = 436.9633 kcal/mol (436.9567 without restraints) Performing minimization step: 3169. Total energy = 436.9074 kcal/mol (436.9009 without restraints) Performing minimization step: 3170. Total energy = 436.8518 kcal/mol (436.8452 without restraints) Performing minimization step: 3171. Total energy = 436.7961 kcal/mol (436.7896 without restraints) Performing minimization step: 3172. Total energy = 436.7405 kcal/mol (436.7339 without restraints) Performing minimization step: 3173. Total energy = 436.6848 kcal/mol (436.6782 without restraints) Performing minimization step: 3174. Total energy = 436.6291 kcal/mol (436.6226 without restraints) Performing minimization step: 3175. Total energy = 436.5735 kcal/mol (436.5670 without restraints) Performing minimization step: 3176. Total energy = 436.5180 kcal/mol (436.5114 without restraints) Performing minimization step: 3177. Total energy = 436.4624 kcal/mol (436.4559 without restraints) Performing minimization step: 3178. Total energy = 436.4069 kcal/mol (436.4004 without restraints) Performing minimization step: 3179. Total energy = 436.3515 kcal/mol (436.3450 without restraints) Performing minimization step: 3180. Total energy = 436.2961 kcal/mol (436.2896 without restraints) Performing minimization step: 3181. Total energy = 436.2407 kcal/mol (436.2342 without restraints) Performing minimization step: 3182. Total energy = 436.1854 kcal/mol (436.1788 without restraints) Performing minimization step: 3183. Total energy = 436.1301 kcal/mol (436.1236 without restraints) Performing minimization step: 3184. Total energy = 436.0748 kcal/mol (436.0683 without restraints) Performing minimization step: 3185. Total energy = 436.0196 kcal/mol (436.0131 without restraints) Performing minimization step: 3186. Total energy = 435.9644 kcal/mol (435.9579 without restraints) Performing minimization step: 3187. Total energy = 435.9095 kcal/mol (435.9030 without restraints) Performing minimization step: 3188. Total energy = 435.8544 kcal/mol (435.8479 without restraints) Performing minimization step: 3189. Total energy = 435.7993 kcal/mol (435.7928 without restraints) Performing minimization step: 3190. Total energy = 435.7443 kcal/mol (435.7378 without restraints) Performing minimization step: 3191. Total energy = 435.6893 kcal/mol (435.6828 without restraints) Performing minimization step: 3192. Total energy = 435.6344 kcal/mol (435.6279 without restraints) Performing minimization step: 3193. Total energy = 435.5795 kcal/mol (435.5730 without restraints) Performing minimization step: 3194. Total energy = 435.5246 kcal/mol (435.5181 without restraints) Performing minimization step: 3195. Total energy = 435.4698 kcal/mol (435.4633 without restraints) Performing minimization step: 3196. Total energy = 435.4150 kcal/mol (435.4085 without restraints) Performing minimization step: 3197. Total energy = 435.3602 kcal/mol (435.3538 without restraints) Performing minimization step: 3198. Total energy = 435.3055 kcal/mol (435.2990 without restraints) Performing minimization step: 3199. Total energy = 435.2508 kcal/mol (435.2444 without restraints) Performing minimization step: 3200. Total energy = 435.1962 kcal/mol (435.1897 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 435.1416 kcal/mol (435.1351 without restraints) Performing minimization step: 3202. Total energy = 435.0869 kcal/mol (435.0804 without restraints) Performing minimization step: 3203. Total energy = 435.0323 kcal/mol (435.0259 without restraints) Performing minimization step: 3204. Total energy = 434.9778 kcal/mol (434.9714 without restraints) Performing minimization step: 3205. Total energy = 434.9231 kcal/mol (434.9167 without restraints) Performing minimization step: 3206. Total energy = 434.8687 kcal/mol (434.8623 without restraints) Performing minimization step: 3207. Total energy = 434.8143 kcal/mol (434.8079 without restraints) Performing minimization step: 3208. Total energy = 434.7600 kcal/mol (434.7536 without restraints) Performing minimization step: 3209. Total energy = 434.7057 kcal/mol (434.6993 without restraints) Performing minimization step: 3210. Total energy = 434.6515 kcal/mol (434.6451 without restraints) Performing minimization step: 3211. Total energy = 434.5972 kcal/mol (434.5908 without restraints) Performing minimization step: 3212. Total energy = 434.5430 kcal/mol (434.5366 without restraints) Performing minimization step: 3213. Total energy = 434.4888 kcal/mol (434.4824 without restraints) Performing minimization step: 3214. Total energy = 434.4347 kcal/mol (434.4283 without restraints) Performing minimization step: 3215. Total energy = 434.3806 kcal/mol (434.3742 without restraints) Performing minimization step: 3216. Total energy = 434.3266 kcal/mol (434.3202 without restraints) Performing minimization step: 3217. Total energy = 434.2726 kcal/mol (434.2662 without restraints) Performing minimization step: 3218. Total energy = 434.2186 kcal/mol (434.2122 without restraints) Performing minimization step: 3219. Total energy = 434.1647 kcal/mol (434.1583 without restraints) Performing minimization step: 3220. Total energy = 434.1108 kcal/mol (434.1044 without restraints) Performing minimization step: 3221. Total energy = 434.0569 kcal/mol (434.0505 without restraints) Performing minimization step: 3222. Total energy = 434.0031 kcal/mol (433.9967 without restraints) Performing minimization step: 3223. Total energy = 433.9493 kcal/mol (433.9429 without restraints) Performing minimization step: 3224. Total energy = 433.8955 kcal/mol (433.8892 without restraints) Performing minimization step: 3225. Total energy = 433.8418 kcal/mol (433.8354 without restraints) Performing minimization step: 3226. Total energy = 433.7881 kcal/mol (433.7818 without restraints) Performing minimization step: 3227. Total energy = 433.7345 kcal/mol (433.7282 without restraints) Performing minimization step: 3228. Total energy = 433.6809 kcal/mol (433.6745 without restraints) Performing minimization step: 3229. Total energy = 433.6273 kcal/mol (433.6210 without restraints) Performing minimization step: 3230. Total energy = 433.5738 kcal/mol (433.5674 without restraints) Performing minimization step: 3231. Total energy = 433.5200 kcal/mol (433.5137 without restraints) Performing minimization step: 3232. Total energy = 433.4665 kcal/mol (433.4602 without restraints) Performing minimization step: 3233. Total energy = 433.4131 kcal/mol (433.4068 without restraints) Performing minimization step: 3234. Total energy = 433.3597 kcal/mol (433.3534 without restraints) Performing minimization step: 3235. Total energy = 433.3063 kcal/mol (433.3000 without restraints) Performing minimization step: 3236. Total energy = 433.2530 kcal/mol (433.2467 without restraints) Performing minimization step: 3237. Total energy = 433.1997 kcal/mol (433.1934 without restraints) Performing minimization step: 3238. Total energy = 433.1464 kcal/mol (433.1401 without restraints) Performing minimization step: 3239. Total energy = 433.0932 kcal/mol (433.0869 without restraints) Performing minimization step: 3240. Total energy = 433.0400 kcal/mol (433.0337 without restraints) Performing minimization step: 3241. Total energy = 432.9868 kcal/mol (432.9806 without restraints) Performing minimization step: 3242. Total energy = 432.9337 kcal/mol (432.9275 without restraints) Performing minimization step: 3243. Total energy = 432.8806 kcal/mol (432.8743 without restraints) Performing minimization step: 3244. Total energy = 432.8275 kcal/mol (432.8213 without restraints) Performing minimization step: 3245. Total energy = 432.7745 kcal/mol (432.7683 without restraints) Performing minimization step: 3246. Total energy = 432.7216 kcal/mol (432.7153 without restraints) Performing minimization step: 3247. Total energy = 432.6686 kcal/mol (432.6624 without restraints) Performing minimization step: 3248. Total energy = 432.6157 kcal/mol (432.6095 without restraints) Performing minimization step: 3249. Total energy = 432.5628 kcal/mol (432.5566 without restraints) Performing minimization step: 3250. Total energy = 432.5100 kcal/mol (432.5037 without restraints) Performing minimization step: 3251. Total energy = 432.4572 kcal/mol (432.4509 without restraints) Performing minimization step: 3252. Total energy = 432.4044 kcal/mol (432.3981 without restraints) Performing minimization step: 3253. Total energy = 432.3516 kcal/mol (432.3454 without restraints) Performing minimization step: 3254. Total energy = 432.2989 kcal/mol (432.2927 without restraints) Performing minimization step: 3255. Total energy = 432.2462 kcal/mol (432.2400 without restraints) Performing minimization step: 3256. Total energy = 432.1938 kcal/mol (432.1876 without restraints) Performing minimization step: 3257. Total energy = 432.1412 kcal/mol (432.1350 without restraints) Performing minimization step: 3258. Total energy = 432.0886 kcal/mol (432.0824 without restraints) Performing minimization step: 3259. Total energy = 432.0361 kcal/mol (432.0299 without restraints) Performing minimization step: 3260. Total energy = 431.9833 kcal/mol (431.9771 without restraints) Performing minimization step: 3261. Total energy = 431.9311 kcal/mol (431.9249 without restraints) Performing minimization step: 3262. Total energy = 431.8786 kcal/mol (431.8724 without restraints) Performing minimization step: 3263. Total energy = 431.8262 kcal/mol (431.8200 without restraints) Performing minimization step: 3264. Total energy = 431.7739 kcal/mol (431.7677 without restraints) Performing minimization step: 3265. Total energy = 431.7215 kcal/mol (431.7153 without restraints) Performing minimization step: 3266. Total energy = 431.6692 kcal/mol (431.6630 without restraints) Performing minimization step: 3267. Total energy = 431.6168 kcal/mol (431.6105 without restraints) Performing minimization step: 3268. Total energy = 431.5645 kcal/mol (431.5583 without restraints) Performing minimization step: 3269. Total energy = 431.5122 kcal/mol (431.5061 without restraints) Performing minimization step: 3270. Total energy = 431.4601 kcal/mol (431.4539 without restraints) Performing minimization step: 3271. Total energy = 431.4079 kcal/mol (431.4018 without restraints) Performing minimization step: 3272. Total energy = 431.3558 kcal/mol (431.3497 without restraints) Performing minimization step: 3273. Total energy = 431.3037 kcal/mol (431.2976 without restraints) Performing minimization step: 3274. Total energy = 431.2516 kcal/mol (431.2455 without restraints) Performing minimization step: 3275. Total energy = 431.1996 kcal/mol (431.1935 without restraints) Performing minimization step: 3276. Total energy = 431.1476 kcal/mol (431.1415 without restraints) Performing minimization step: 3277. Total energy = 431.0957 kcal/mol (431.0896 without restraints) Performing minimization step: 3278. Total energy = 431.0438 kcal/mol (431.0377 without restraints) Performing minimization step: 3279. Total energy = 430.9919 kcal/mol (430.9858 without restraints) Performing minimization step: 3280. Total energy = 430.9401 kcal/mol (430.9340 without restraints) Performing minimization step: 3281. Total energy = 430.8883 kcal/mol (430.8821 without restraints) Performing minimization step: 3282. Total energy = 430.8365 kcal/mol (430.8304 without restraints) Performing minimization step: 3283. Total energy = 430.7847 kcal/mol (430.7786 without restraints) Performing minimization step: 3284. Total energy = 430.7330 kcal/mol (430.7269 without restraints) Performing minimization step: 3285. Total energy = 430.6816 kcal/mol (430.6755 without restraints) Performing minimization step: 3286. Total energy = 430.6299 kcal/mol (430.6238 without restraints) Performing minimization step: 3287. Total energy = 430.5783 kcal/mol (430.5722 without restraints) Performing minimization step: 3288. Total energy = 430.5267 kcal/mol (430.5206 without restraints) Performing minimization step: 3289. Total energy = 430.4750 kcal/mol (430.4688 without restraints) Performing minimization step: 3290. Total energy = 430.4233 kcal/mol (430.4173 without restraints) Performing minimization step: 3291. Total energy = 430.3718 kcal/mol (430.3658 without restraints) Performing minimization step: 3292. Total energy = 430.3204 kcal/mol (430.3143 without restraints) Performing minimization step: 3293. Total energy = 430.2689 kcal/mol (430.2629 without restraints) Performing minimization step: 3294. Total energy = 430.2175 kcal/mol (430.2115 without restraints) Performing minimization step: 3295. Total energy = 430.1662 kcal/mol (430.1601 without restraints) Performing minimization step: 3296. Total energy = 430.1148 kcal/mol (430.1088 without restraints) Performing minimization step: 3297. Total energy = 430.0635 kcal/mol (430.0575 without restraints) Performing minimization step: 3298. Total energy = 430.0122 kcal/mol (430.0062 without restraints) Performing minimization step: 3299. Total energy = 429.9610 kcal/mol (429.9549 without restraints) Performing minimization step: 3300. Total energy = 429.9098 kcal/mol (429.9037 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 429.8586 kcal/mol (429.8525 without restraints) Performing minimization step: 3302. Total energy = 429.8074 kcal/mol (429.8014 without restraints) Performing minimization step: 3303. Total energy = 429.7563 kcal/mol (429.7503 without restraints) Performing minimization step: 3304. Total energy = 429.7052 kcal/mol (429.6992 without restraints) Performing minimization step: 3305. Total energy = 429.6541 kcal/mol (429.6481 without restraints) Performing minimization step: 3306. Total energy = 429.6031 kcal/mol (429.5971 without restraints) Performing minimization step: 3307. Total energy = 429.5521 kcal/mol (429.5461 without restraints) Performing minimization step: 3308. Total energy = 429.5011 kcal/mol (429.4951 without restraints) Performing minimization step: 3309. Total energy = 429.4502 kcal/mol (429.4442 without restraints) Performing minimization step: 3310. Total energy = 429.3993 kcal/mol (429.3933 without restraints) Performing minimization step: 3311. Total energy = 429.3484 kcal/mol (429.3424 without restraints) Performing minimization step: 3312. Total energy = 429.2975 kcal/mol (429.2915 without restraints) Performing minimization step: 3313. Total energy = 429.2467 kcal/mol (429.2407 without restraints) Performing minimization step: 3314. Total energy = 429.1959 kcal/mol (429.1899 without restraints) Performing minimization step: 3315. Total energy = 429.1452 kcal/mol (429.1392 without restraints) Performing minimization step: 3316. Total energy = 429.0945 kcal/mol (429.0885 without restraints) Performing minimization step: 3317. Total energy = 429.0438 kcal/mol (429.0378 without restraints) Performing minimization step: 3318. Total energy = 428.9933 kcal/mol (428.9873 without restraints) Performing minimization step: 3319. Total energy = 428.9426 kcal/mol (428.9367 without restraints) Performing minimization step: 3320. Total energy = 428.8920 kcal/mol (428.8861 without restraints) Performing minimization step: 3321. Total energy = 428.8415 kcal/mol (428.8355 without restraints) Performing minimization step: 3322. Total energy = 428.7909 kcal/mol (428.7849 without restraints) Performing minimization step: 3323. Total energy = 428.7404 kcal/mol (428.7344 without restraints) Performing minimization step: 3324. Total energy = 428.6899 kcal/mol (428.6839 without restraints) Performing minimization step: 3325. Total energy = 428.6394 kcal/mol (428.6335 without restraints) Performing minimization step: 3326. Total energy = 428.5890 kcal/mol (428.5831 without restraints) Performing minimization step: 3327. Total energy = 428.5386 kcal/mol (428.5327 without restraints) Performing minimization step: 3328. Total energy = 428.4883 kcal/mol (428.4823 without restraints) Performing minimization step: 3329. Total energy = 428.4379 kcal/mol (428.4320 without restraints) Performing minimization step: 3330. Total energy = 428.3876 kcal/mol (428.3817 without restraints) Performing minimization step: 3331. Total energy = 428.3374 kcal/mol (428.3314 without restraints) Performing minimization step: 3332. Total energy = 428.2871 kcal/mol (428.2812 without restraints) Performing minimization step: 3333. Total energy = 428.2369 kcal/mol (428.2310 without restraints) Performing minimization step: 3334. Total energy = 428.1867 kcal/mol (428.1808 without restraints) Performing minimization step: 3335. Total energy = 428.1365 kcal/mol (428.1306 without restraints) Performing minimization step: 3336. Total energy = 428.0864 kcal/mol (428.0805 without restraints) Performing minimization step: 3337. Total energy = 428.0363 kcal/mol (428.0305 without restraints) Performing minimization step: 3338. Total energy = 427.9863 kcal/mol (427.9804 without restraints) Performing minimization step: 3339. Total energy = 427.9362 kcal/mol (427.9303 without restraints) Performing minimization step: 3340. Total energy = 427.8862 kcal/mol (427.8803 without restraints) Performing minimization step: 3341. Total energy = 427.8362 kcal/mol (427.8303 without restraints) Performing minimization step: 3342. Total energy = 427.7863 kcal/mol (427.7804 without restraints) Performing minimization step: 3343. Total energy = 427.7362 kcal/mol (427.7303 without restraints) Performing minimization step: 3344. Total energy = 427.6863 kcal/mol (427.6804 without restraints) Performing minimization step: 3345. Total energy = 427.6366 kcal/mol (427.6307 without restraints) Performing minimization step: 3346. Total energy = 427.5867 kcal/mol (427.5808 without restraints) Performing minimization step: 3347. Total energy = 427.5369 kcal/mol (427.5310 without restraints) Performing minimization step: 3348. Total energy = 427.4873 kcal/mol (427.4814 without restraints) Performing minimization step: 3349. Total energy = 427.4374 kcal/mol (427.4315 without restraints) Performing minimization step: 3350. Total energy = 427.3877 kcal/mol (427.3818 without restraints) Performing minimization step: 3351. Total energy = 427.3379 kcal/mol (427.3321 without restraints) Performing minimization step: 3352. Total energy = 427.2883 kcal/mol (427.2824 without restraints) Performing minimization step: 3353. Total energy = 427.2386 kcal/mol (427.2328 without restraints) Performing minimization step: 3354. Total energy = 427.1890 kcal/mol (427.1831 without restraints) Performing minimization step: 3355. Total energy = 427.1395 kcal/mol (427.1338 without restraints) Performing minimization step: 3356. Total energy = 427.0901 kcal/mol (427.0842 without restraints) Performing minimization step: 3357. Total energy = 427.0405 kcal/mol (427.0347 without restraints) Performing minimization step: 3358. Total energy = 426.9910 kcal/mol (426.9852 without restraints) Performing minimization step: 3359. Total energy = 426.9415 kcal/mol (426.9357 without restraints) Performing minimization step: 3360. Total energy = 426.8920 kcal/mol (426.8861 without restraints) Performing minimization step: 3361. Total energy = 426.8425 kcal/mol (426.8367 without restraints) Performing minimization step: 3362. Total energy = 426.7931 kcal/mol (426.7873 without restraints) Performing minimization step: 3363. Total energy = 426.7437 kcal/mol (426.7379 without restraints) Performing minimization step: 3364. Total energy = 426.6944 kcal/mol (426.6886 without restraints) Performing minimization step: 3365. Total energy = 426.6451 kcal/mol (426.6392 without restraints) Performing minimization step: 3366. Total energy = 426.5958 kcal/mol (426.5900 without restraints) Performing minimization step: 3367. Total energy = 426.5465 kcal/mol (426.5407 without restraints) Performing minimization step: 3368. Total energy = 426.4973 kcal/mol (426.4915 without restraints) Performing minimization step: 3369. Total energy = 426.4481 kcal/mol (426.4423 without restraints) Performing minimization step: 3370. Total energy = 426.3989 kcal/mol (426.3931 without restraints) Performing minimization step: 3371. Total energy = 426.3498 kcal/mol (426.3440 without restraints) Performing minimization step: 3372. Total energy = 426.3006 kcal/mol (426.2948 without restraints) Performing minimization step: 3373. Total energy = 426.2516 kcal/mol (426.2458 without restraints) Performing minimization step: 3374. Total energy = 426.2025 kcal/mol (426.1967 without restraints) Performing minimization step: 3375. Total energy = 426.1534 kcal/mol (426.1477 without restraints) Performing minimization step: 3376. Total energy = 426.1044 kcal/mol (426.0987 without restraints) Performing minimization step: 3377. Total energy = 426.0555 kcal/mol (426.0497 without restraints) Performing minimization step: 3378. Total energy = 426.0065 kcal/mol (426.0007 without restraints) Performing minimization step: 3379. Total energy = 425.9576 kcal/mol (425.9518 without restraints) Performing minimization step: 3380. Total energy = 425.9084 kcal/mol (425.9027 without restraints) Performing minimization step: 3381. Total energy = 425.8596 kcal/mol (425.8538 without restraints) Performing minimization step: 3382. Total energy = 425.8107 kcal/mol (425.8050 without restraints) Performing minimization step: 3383. Total energy = 425.7619 kcal/mol (425.7561 without restraints) Performing minimization step: 3384. Total energy = 425.7131 kcal/mol (425.7073 without restraints) Performing minimization step: 3385. Total energy = 425.6643 kcal/mol (425.6586 without restraints) Performing minimization step: 3386. Total energy = 425.6156 kcal/mol (425.6098 without restraints) Performing minimization step: 3387. Total energy = 425.5669 kcal/mol (425.5611 without restraints) Performing minimization step: 3388. Total energy = 425.5182 kcal/mol (425.5124 without restraints) Performing minimization step: 3389. Total energy = 425.4695 kcal/mol (425.4638 without restraints) Performing minimization step: 3390. Total energy = 425.4209 kcal/mol (425.4151 without restraints) Performing minimization step: 3391. Total energy = 425.3723 kcal/mol (425.3665 without restraints) Performing minimization step: 3392. Total energy = 425.3239 kcal/mol (425.3182 without restraints) Performing minimization step: 3393. Total energy = 425.2753 kcal/mol (425.2696 without restraints) Performing minimization step: 3394. Total energy = 425.2268 kcal/mol (425.2211 without restraints) Performing minimization step: 3395. Total energy = 425.1783 kcal/mol (425.1726 without restraints) Performing minimization step: 3396. Total energy = 425.1298 kcal/mol (425.1241 without restraints) Performing minimization step: 3397. Total energy = 425.0814 kcal/mol (425.0757 without restraints) Performing minimization step: 3398. Total energy = 425.0329 kcal/mol (425.0272 without restraints) Performing minimization step: 3399. Total energy = 424.9845 kcal/mol (424.9788 without restraints) Performing minimization step: 3400. Total energy = 424.9362 kcal/mol (424.9305 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 424.8878 kcal/mol (424.8821 without restraints) Performing minimization step: 3402. Total energy = 424.8395 kcal/mol (424.8338 without restraints) Performing minimization step: 3403. Total energy = 424.7912 kcal/mol (424.7855 without restraints) Performing minimization step: 3404. Total energy = 424.7429 kcal/mol (424.7372 without restraints) Performing minimization step: 3405. Total energy = 424.6947 kcal/mol (424.6890 without restraints) Performing minimization step: 3406. Total energy = 424.6465 kcal/mol (424.6408 without restraints) Performing minimization step: 3407. Total energy = 424.5983 kcal/mol (424.5926 without restraints) Performing minimization step: 3408. Total energy = 424.5504 kcal/mol (424.5447 without restraints) Performing minimization step: 3409. Total energy = 424.5020 kcal/mol (424.4964 without restraints) Performing minimization step: 3410. Total energy = 424.4539 kcal/mol (424.4483 without restraints) Performing minimization step: 3411. Total energy = 424.4058 kcal/mol (424.4002 without restraints) Performing minimization step: 3412. Total energy = 424.3578 kcal/mol (424.3521 without restraints) Performing minimization step: 3413. Total energy = 424.3097 kcal/mol (424.3041 without restraints) Performing minimization step: 3414. Total energy = 424.2617 kcal/mol (424.2561 without restraints) Performing minimization step: 3415. Total energy = 424.2137 kcal/mol (424.2081 without restraints) Performing minimization step: 3416. Total energy = 424.1658 kcal/mol (424.1601 without restraints) Performing minimization step: 3417. Total energy = 424.1179 kcal/mol (424.1122 without restraints) Performing minimization step: 3418. Total energy = 424.0699 kcal/mol (424.0643 without restraints) Performing minimization step: 3419. Total energy = 424.0218 kcal/mol (424.0162 without restraints) Performing minimization step: 3420. Total energy = 423.9740 kcal/mol (423.9683 without restraints) Performing minimization step: 3421. Total energy = 423.9261 kcal/mol (423.9205 without restraints) Performing minimization step: 3422. Total energy = 423.8783 kcal/mol (423.8727 without restraints) Performing minimization step: 3423. Total energy = 423.8305 kcal/mol (423.8249 without restraints) Performing minimization step: 3424. Total energy = 423.7828 kcal/mol (423.7771 without restraints) Performing minimization step: 3425. Total energy = 423.7350 kcal/mol (423.7294 without restraints) Performing minimization step: 3426. Total energy = 423.6874 kcal/mol (423.6817 without restraints) Performing minimization step: 3427. Total energy = 423.6397 kcal/mol (423.6341 without restraints) Performing minimization step: 3428. Total energy = 423.5920 kcal/mol (423.5864 without restraints) Performing minimization step: 3429. Total energy = 423.5444 kcal/mol (423.5388 without restraints) Performing minimization step: 3430. Total energy = 423.4968 kcal/mol (423.4912 without restraints) Performing minimization step: 3431. Total energy = 423.4492 kcal/mol (423.4436 without restraints) Performing minimization step: 3432. Total energy = 423.4016 kcal/mol (423.3960 without restraints) Performing minimization step: 3433. Total energy = 423.3541 kcal/mol (423.3485 without restraints) Performing minimization step: 3434. Total energy = 423.3066 kcal/mol (423.3010 without restraints) Performing minimization step: 3435. Total energy = 423.2591 kcal/mol (423.2535 without restraints) Performing minimization step: 3436. Total energy = 423.2116 kcal/mol (423.2060 without restraints) Performing minimization step: 3437. Total energy = 423.1643 kcal/mol (423.1588 without restraints) Performing minimization step: 3438. Total energy = 423.1170 kcal/mol (423.1114 without restraints) Performing minimization step: 3439. Total energy = 423.0697 kcal/mol (423.0642 without restraints) Performing minimization step: 3440. Total energy = 423.0224 kcal/mol (423.0168 without restraints) Performing minimization step: 3441. Total energy = 422.9748 kcal/mol (422.9693 without restraints) Performing minimization step: 3442. Total energy = 422.9275 kcal/mol (422.9219 without restraints) Performing minimization step: 3443. Total energy = 422.8802 kcal/mol (422.8746 without restraints) Performing minimization step: 3444. Total energy = 422.8330 kcal/mol (422.8274 without restraints) Performing minimization step: 3445. Total energy = 422.7857 kcal/mol (422.7801 without restraints) Performing minimization step: 3446. Total energy = 422.7385 kcal/mol (422.7329 without restraints) Performing minimization step: 3447. Total energy = 422.6913 kcal/mol (422.6857 without restraints) Performing minimization step: 3448. Total energy = 422.6441 kcal/mol (422.6385 without restraints) Performing minimization step: 3449. Total energy = 422.5970 kcal/mol (422.5914 without restraints) Performing minimization step: 3450. Total energy = 422.5499 kcal/mol (422.5443 without restraints) Performing minimization step: 3451. Total energy = 422.5028 kcal/mol (422.4972 without restraints) Performing minimization step: 3452. Total energy = 422.4557 kcal/mol (422.4501 without restraints) Performing minimization step: 3453. Total energy = 422.4086 kcal/mol (422.4031 without restraints) Performing minimization step: 3454. Total energy = 422.3616 kcal/mol (422.3561 without restraints) Performing minimization step: 3455. Total energy = 422.3146 kcal/mol (422.3091 without restraints) Performing minimization step: 3456. Total energy = 422.2674 kcal/mol (422.2619 without restraints) Performing minimization step: 3457. Total energy = 422.2203 kcal/mol (422.2147 without restraints) Performing minimization step: 3458. Total energy = 422.1733 kcal/mol (422.1678 without restraints) Performing minimization step: 3459. Total energy = 422.1264 kcal/mol (422.1209 without restraints) Performing minimization step: 3460. Total energy = 422.0796 kcal/mol (422.0740 without restraints) Performing minimization step: 3461. Total energy = 422.0327 kcal/mol (422.0272 without restraints) Performing minimization step: 3462. Total energy = 421.9857 kcal/mol (421.9802 without restraints) Performing minimization step: 3463. Total energy = 421.9389 kcal/mol (421.9333 without restraints) Performing minimization step: 3464. Total energy = 421.8921 kcal/mol (421.8865 without restraints) Performing minimization step: 3465. Total energy = 421.8453 kcal/mol (421.8398 without restraints) Performing minimization step: 3466. Total energy = 421.7985 kcal/mol (421.7930 without restraints) Performing minimization step: 3467. Total energy = 421.7521 kcal/mol (421.7466 without restraints) Performing minimization step: 3468. Total energy = 421.7054 kcal/mol (421.6999 without restraints) Performing minimization step: 3469. Total energy = 421.6587 kcal/mol (421.6532 without restraints) Performing minimization step: 3470. Total energy = 421.6119 kcal/mol (421.6063 without restraints) Performing minimization step: 3471. Total energy = 421.5652 kcal/mol (421.5597 without restraints) Performing minimization step: 3472. Total energy = 421.5185 kcal/mol (421.5130 without restraints) Performing minimization step: 3473. Total energy = 421.4720 kcal/mol (421.4665 without restraints) Performing minimization step: 3474. Total energy = 421.4254 kcal/mol (421.4199 without restraints) Performing minimization step: 3475. Total energy = 421.3789 kcal/mol (421.3734 without restraints) Performing minimization step: 3476. Total energy = 421.3323 kcal/mol (421.3269 without restraints) Performing minimization step: 3477. Total energy = 421.2857 kcal/mol (421.2802 without restraints) Performing minimization step: 3478. Total energy = 421.2392 kcal/mol (421.2337 without restraints) Performing minimization step: 3479. Total energy = 421.1927 kcal/mol (421.1872 without restraints) Performing minimization step: 3480. Total energy = 421.1463 kcal/mol (421.1408 without restraints) Performing minimization step: 3481. Total energy = 421.0999 kcal/mol (421.0944 without restraints) Performing minimization step: 3482. Total energy = 421.0535 kcal/mol (421.0480 without restraints) Performing minimization step: 3483. Total energy = 421.0072 kcal/mol (421.0017 without restraints) Performing minimization step: 3484. Total energy = 420.9608 kcal/mol (420.9554 without restraints) Performing minimization step: 3485. Total energy = 420.9145 kcal/mol (420.9090 without restraints) Performing minimization step: 3486. Total energy = 420.8683 kcal/mol (420.8630 without restraints) Performing minimization step: 3487. Total energy = 420.8222 kcal/mol (420.8167 without restraints) Performing minimization step: 3488. Total energy = 420.7759 kcal/mol (420.7705 without restraints) Performing minimization step: 3489. Total energy = 420.7297 kcal/mol (420.7243 without restraints) Performing minimization step: 3490. Total energy = 420.6835 kcal/mol (420.6781 without restraints) Performing minimization step: 3491. Total energy = 420.6374 kcal/mol (420.6319 without restraints) Performing minimization step: 3492. Total energy = 420.5912 kcal/mol (420.5858 without restraints) Performing minimization step: 3493. Total energy = 420.5451 kcal/mol (420.5396 without restraints) Performing minimization step: 3494. Total energy = 420.4990 kcal/mol (420.4935 without restraints) Performing minimization step: 3495. Total energy = 420.4529 kcal/mol (420.4474 without restraints) Performing minimization step: 3496. Total energy = 420.4068 kcal/mol (420.4014 without restraints) Performing minimization step: 3497. Total energy = 420.3608 kcal/mol (420.3553 without restraints) Performing minimization step: 3498. Total energy = 420.3148 kcal/mol (420.3093 without restraints) Performing minimization step: 3499. Total energy = 420.2692 kcal/mol (420.2640 without restraints) Performing minimization step: 3500. Total energy = 420.2234 kcal/mol (420.2180 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 420.1775 kcal/mol (420.1720 without restraints) Performing minimization step: 3502. Total energy = 420.1315 kcal/mol (420.1261 without restraints) Performing minimization step: 3503. Total energy = 420.0856 kcal/mol (420.0802 without restraints) Performing minimization step: 3504. Total energy = 420.0397 kcal/mol (420.0342 without restraints) Performing minimization step: 3505. Total energy = 419.9938 kcal/mol (419.9884 without restraints) Performing minimization step: 3506. Total energy = 419.9480 kcal/mol (419.9425 without restraints) Performing minimization step: 3507. Total energy = 419.9021 kcal/mol (419.8967 without restraints) Performing minimization step: 3508. Total energy = 419.8563 kcal/mol (419.8509 without restraints) Performing minimization step: 3509. Total energy = 419.8106 kcal/mol (419.8052 without restraints) Performing minimization step: 3510. Total energy = 419.7648 kcal/mol (419.7594 without restraints) Performing minimization step: 3511. Total energy = 419.7191 kcal/mol (419.7137 without restraints) Performing minimization step: 3512. Total energy = 419.6734 kcal/mol (419.6680 without restraints) Performing minimization step: 3513. Total energy = 419.6277 kcal/mol (419.6223 without restraints) Performing minimization step: 3514. Total energy = 419.5818 kcal/mol (419.5764 without restraints) Performing minimization step: 3515. Total energy = 419.5362 kcal/mol (419.5308 without restraints) Performing minimization step: 3516. Total energy = 419.4905 kcal/mol (419.4851 without restraints) Performing minimization step: 3517. Total energy = 419.4449 kcal/mol (419.4395 without restraints) Performing minimization step: 3518. Total energy = 419.3993 kcal/mol (419.3940 without restraints) Performing minimization step: 3519. Total energy = 419.3538 kcal/mol (419.3484 without restraints) Performing minimization step: 3520. Total energy = 419.3083 kcal/mol (419.3029 without restraints) Performing minimization step: 3521. Total energy = 419.2627 kcal/mol (419.2574 without restraints) Performing minimization step: 3522. Total energy = 419.2172 kcal/mol (419.2119 without restraints) Performing minimization step: 3523. Total energy = 419.1716 kcal/mol (419.1662 without restraints) Performing minimization step: 3524. Total energy = 419.1261 kcal/mol (419.1208 without restraints) Performing minimization step: 3525. Total energy = 419.0807 kcal/mol (419.0754 without restraints) Performing minimization step: 3526. Total energy = 419.0353 kcal/mol (419.0300 without restraints) Performing minimization step: 3527. Total energy = 418.9900 kcal/mol (418.9846 without restraints) Performing minimization step: 3528. Total energy = 418.9446 kcal/mol (418.9392 without restraints) Performing minimization step: 3529. Total energy = 418.8992 kcal/mol (418.8939 without restraints) Performing minimization step: 3530. Total energy = 418.8539 kcal/mol (418.8486 without restraints) Performing minimization step: 3531. Total energy = 418.8086 kcal/mol (418.8033 without restraints) Performing minimization step: 3532. Total energy = 418.7633 kcal/mol (418.7580 without restraints) Performing minimization step: 3533. Total energy = 418.7181 kcal/mol (418.7127 without restraints) Performing minimization step: 3534. Total energy = 418.6728 kcal/mol (418.6675 without restraints) Performing minimization step: 3535. Total energy = 418.6276 kcal/mol (418.6223 without restraints) Performing minimization step: 3536. Total energy = 418.5824 kcal/mol (418.5771 without restraints) Performing minimization step: 3537. Total energy = 418.5373 kcal/mol (418.5319 without restraints) Performing minimization step: 3538. Total energy = 418.4923 kcal/mol (418.4870 without restraints) Performing minimization step: 3539. Total energy = 418.4472 kcal/mol (418.4419 without restraints) Performing minimization step: 3540. Total energy = 418.4021 kcal/mol (418.3968 without restraints) Performing minimization step: 3541. Total energy = 418.3570 kcal/mol (418.3517 without restraints) Performing minimization step: 3542. Total energy = 418.3119 kcal/mol (418.3066 without restraints) Performing minimization step: 3543. Total energy = 418.2671 kcal/mol (418.2618 without restraints) Performing minimization step: 3544. Total energy = 418.2220 kcal/mol (418.2167 without restraints) Performing minimization step: 3545. Total energy = 418.1770 kcal/mol (418.1717 without restraints) Performing minimization step: 3546. Total energy = 418.1321 kcal/mol (418.1267 without restraints) Performing minimization step: 3547. Total energy = 418.0871 kcal/mol (418.0818 without restraints) Performing minimization step: 3548. Total energy = 418.0421 kcal/mol (418.0368 without restraints) Performing minimization step: 3549. Total energy = 417.9972 kcal/mol (417.9919 without restraints) Performing minimization step: 3550. Total energy = 417.9523 kcal/mol (417.9470 without restraints) Performing minimization step: 3551. Total energy = 417.9074 kcal/mol (417.9022 without restraints) Performing minimization step: 3552. Total energy = 417.8626 kcal/mol (417.8573 without restraints) Performing minimization step: 3553. Total energy = 417.8178 kcal/mol (417.8125 without restraints) Performing minimization step: 3554. Total energy = 417.7729 kcal/mol (417.7677 without restraints) Performing minimization step: 3555. Total energy = 417.7281 kcal/mol (417.7229 without restraints) Performing minimization step: 3556. Total energy = 417.6834 kcal/mol (417.6781 without restraints) Performing minimization step: 3557. Total energy = 417.6386 kcal/mol (417.6333 without restraints) Performing minimization step: 3558. Total energy = 417.5939 kcal/mol (417.5886 without restraints) Performing minimization step: 3559. Total energy = 417.5491 kcal/mol (417.5439 without restraints) Performing minimization step: 3560. Total energy = 417.5044 kcal/mol (417.4992 without restraints) Performing minimization step: 3561. Total energy = 417.4598 kcal/mol (417.4545 without restraints) Performing minimization step: 3562. Total energy = 417.4151 kcal/mol (417.4098 without restraints) Performing minimization step: 3563. Total energy = 417.3705 kcal/mol (417.3652 without restraints) Performing minimization step: 3564. Total energy = 417.3259 kcal/mol (417.3206 without restraints) Performing minimization step: 3565. Total energy = 417.2811 kcal/mol (417.2758 without restraints) Performing minimization step: 3566. Total energy = 417.2365 kcal/mol (417.2312 without restraints) Performing minimization step: 3567. Total energy = 417.1919 kcal/mol (417.1867 without restraints) Performing minimization step: 3568. Total energy = 417.1474 kcal/mol (417.1421 without restraints) Performing minimization step: 3569. Total energy = 417.1030 kcal/mol (417.0979 without restraints) Performing minimization step: 3570. Total energy = 417.0586 kcal/mol (417.0534 without restraints) Performing minimization step: 3571. Total energy = 417.0142 kcal/mol (417.0089 without restraints) Performing minimization step: 3572. Total energy = 416.9697 kcal/mol (416.9645 without restraints) Performing minimization step: 3573. Total energy = 416.9251 kcal/mol (416.9198 without restraints) Performing minimization step: 3574. Total energy = 416.8806 kcal/mol (416.8754 without restraints) Performing minimization step: 3575. Total energy = 416.8363 kcal/mol (416.8310 without restraints) Performing minimization step: 3576. Total energy = 416.7919 kcal/mol (416.7866 without restraints) Performing minimization step: 3577. Total energy = 416.7475 kcal/mol (416.7423 without restraints) Performing minimization step: 3578. Total energy = 416.7032 kcal/mol (416.6980 without restraints) Performing minimization step: 3579. Total energy = 416.6589 kcal/mol (416.6536 without restraints) Performing minimization step: 3580. Total energy = 416.6146 kcal/mol (416.6093 without restraints) Performing minimization step: 3581. Total energy = 416.5703 kcal/mol (416.5651 without restraints) Performing minimization step: 3582. Total energy = 416.5260 kcal/mol (416.5208 without restraints) Performing minimization step: 3583. Total energy = 416.4818 kcal/mol (416.4766 without restraints) Performing minimization step: 3584. Total energy = 416.4376 kcal/mol (416.4324 without restraints) Performing minimization step: 3585. Total energy = 416.3934 kcal/mol (416.3882 without restraints) Performing minimization step: 3586. Total energy = 416.3492 kcal/mol (416.3440 without restraints) Performing minimization step: 3587. Total energy = 416.3050 kcal/mol (416.2998 without restraints) Performing minimization step: 3588. Total energy = 416.2609 kcal/mol (416.2557 without restraints) Performing minimization step: 3589. Total energy = 416.2168 kcal/mol (416.2116 without restraints) Performing minimization step: 3590. Total energy = 416.1727 kcal/mol (416.1675 without restraints) Performing minimization step: 3591. Total energy = 416.1286 kcal/mol (416.1234 without restraints) Performing minimization step: 3592. Total energy = 416.0846 kcal/mol (416.0794 without restraints) Performing minimization step: 3593. Total energy = 416.0405 kcal/mol (416.0353 without restraints) Performing minimization step: 3594. Total energy = 415.9965 kcal/mol (415.9913 without restraints) Performing minimization step: 3595. Total energy = 415.9525 kcal/mol (415.9473 without restraints) Performing minimization step: 3596. Total energy = 415.9085 kcal/mol (415.9033 without restraints) Performing minimization step: 3597. Total energy = 415.8646 kcal/mol (415.8594 without restraints) Performing minimization step: 3598. Total energy = 415.8206 kcal/mol (415.8154 without restraints) Performing minimization step: 3599. Total energy = 415.7767 kcal/mol (415.7715 without restraints) Performing minimization step: 3600. Total energy = 415.7328 kcal/mol (415.7276 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 415.6889 kcal/mol (415.6838 without restraints) Performing minimization step: 3602. Total energy = 415.6449 kcal/mol (415.6397 without restraints) Performing minimization step: 3603. Total energy = 415.6010 kcal/mol (415.5958 without restraints) Performing minimization step: 3604. Total energy = 415.5572 kcal/mol (415.5520 without restraints) Performing minimization step: 3605. Total energy = 415.5134 kcal/mol (415.5082 without restraints) Performing minimization step: 3606. Total energy = 415.4696 kcal/mol (415.4644 without restraints) Performing minimization step: 3607. Total energy = 415.4258 kcal/mol (415.4207 without restraints) Performing minimization step: 3608. Total energy = 415.3821 kcal/mol (415.3769 without restraints) Performing minimization step: 3609. Total energy = 415.3388 kcal/mol (415.3336 without restraints) Performing minimization step: 3610. Total energy = 415.2951 kcal/mol (415.2899 without restraints) Performing minimization step: 3611. Total energy = 415.2516 kcal/mol (415.2464 without restraints) Performing minimization step: 3612. Total energy = 415.2079 kcal/mol (415.2028 without restraints) Performing minimization step: 3613. Total energy = 415.1643 kcal/mol (415.1591 without restraints) Performing minimization step: 3614. Total energy = 415.1209 kcal/mol (415.1157 without restraints) Performing minimization step: 3615. Total energy = 415.0772 kcal/mol (415.0721 without restraints) Performing minimization step: 3616. Total energy = 415.0336 kcal/mol (415.0285 without restraints) Performing minimization step: 3617. Total energy = 414.9904 kcal/mol (414.9853 without restraints) Performing minimization step: 3618. Total energy = 414.9469 kcal/mol (414.9417 without restraints) Performing minimization step: 3619. Total energy = 414.9033 kcal/mol (414.8982 without restraints) Performing minimization step: 3620. Total energy = 414.8598 kcal/mol (414.8547 without restraints) Performing minimization step: 3621. Total energy = 414.8163 kcal/mol (414.8112 without restraints) Performing minimization step: 3622. Total energy = 414.7727 kcal/mol (414.7675 without restraints) Performing minimization step: 3623. Total energy = 414.7292 kcal/mol (414.7240 without restraints) Performing minimization step: 3624. Total energy = 414.6857 kcal/mol (414.6806 without restraints) Performing minimization step: 3625. Total energy = 414.6423 kcal/mol (414.6372 without restraints) Performing minimization step: 3626. Total energy = 414.5989 kcal/mol (414.5937 without restraints) Performing minimization step: 3627. Total energy = 414.5555 kcal/mol (414.5504 without restraints) Performing minimization step: 3628. Total energy = 414.5121 kcal/mol (414.5070 without restraints) Performing minimization step: 3629. Total energy = 414.4689 kcal/mol (414.4639 without restraints) Performing minimization step: 3630. Total energy = 414.4257 kcal/mol (414.4206 without restraints) Performing minimization step: 3631. Total energy = 414.3824 kcal/mol (414.3772 without restraints) Performing minimization step: 3632. Total energy = 414.3391 kcal/mol (414.3340 without restraints) Performing minimization step: 3633. Total energy = 414.2958 kcal/mol (414.2907 without restraints) Performing minimization step: 3634. Total energy = 414.2525 kcal/mol (414.2474 without restraints) Performing minimization step: 3635. Total energy = 414.2093 kcal/mol (414.2042 without restraints) Performing minimization step: 3636. Total energy = 414.1658 kcal/mol (414.1607 without restraints) Performing minimization step: 3637. Total energy = 414.1226 kcal/mol (414.1175 without restraints) Performing minimization step: 3638. Total energy = 414.0795 kcal/mol (414.0744 without restraints) Performing minimization step: 3639. Total energy = 414.0363 kcal/mol (414.0312 without restraints) Performing minimization step: 3640. Total energy = 413.9930 kcal/mol (413.9879 without restraints) Performing minimization step: 3641. Total energy = 413.9498 kcal/mol (413.9447 without restraints) Performing minimization step: 3642. Total energy = 413.9067 kcal/mol (413.9016 without restraints) Performing minimization step: 3643. Total energy = 413.8637 kcal/mol (413.8586 without restraints) Performing minimization step: 3644. Total energy = 413.8206 kcal/mol (413.8155 without restraints) Performing minimization step: 3645. Total energy = 413.7775 kcal/mol (413.7725 without restraints) Performing minimization step: 3646. Total energy = 413.7345 kcal/mol (413.7294 without restraints) Performing minimization step: 3647. Total energy = 413.6915 kcal/mol (413.6864 without restraints) Performing minimization step: 3648. Total energy = 413.6485 kcal/mol (413.6434 without restraints) Performing minimization step: 3649. Total energy = 413.6055 kcal/mol (413.6004 without restraints) Performing minimization step: 3650. Total energy = 413.5625 kcal/mol (413.5574 without restraints) Performing minimization step: 3651. Total energy = 413.5196 kcal/mol (413.5145 without restraints) Performing minimization step: 3652. Total energy = 413.4767 kcal/mol (413.4716 without restraints) Performing minimization step: 3653. Total energy = 413.4337 kcal/mol (413.4287 without restraints) Performing minimization step: 3654. Total energy = 413.3909 kcal/mol (413.3858 without restraints) Performing minimization step: 3655. Total energy = 413.3480 kcal/mol (413.3429 without restraints) Performing minimization step: 3656. Total energy = 413.3051 kcal/mol (413.3001 without restraints) Performing minimization step: 3657. Total energy = 413.2623 kcal/mol (413.2572 without restraints) Performing minimization step: 3658. Total energy = 413.2194 kcal/mol (413.2144 without restraints) Performing minimization step: 3659. Total energy = 413.1766 kcal/mol (413.1716 without restraints) Performing minimization step: 3660. Total energy = 413.1338 kcal/mol (413.1288 without restraints) Performing minimization step: 3661. Total energy = 413.0911 kcal/mol (413.0860 without restraints) Performing minimization step: 3662. Total energy = 413.0483 kcal/mol (413.0433 without restraints) Performing minimization step: 3663. Total energy = 413.0056 kcal/mol (413.0005 without restraints) Performing minimization step: 3664. Total energy = 412.9628 kcal/mol (412.9578 without restraints) Performing minimization step: 3665. Total energy = 412.9202 kcal/mol (412.9151 without restraints) Performing minimization step: 3666. Total energy = 412.8775 kcal/mol (412.8724 without restraints) Performing minimization step: 3667. Total energy = 412.8348 kcal/mol (412.8298 without restraints) Performing minimization step: 3668. Total energy = 412.7922 kcal/mol (412.7872 without restraints) Performing minimization step: 3669. Total energy = 412.7496 kcal/mol (412.7445 without restraints) Performing minimization step: 3670. Total energy = 412.7070 kcal/mol (412.7019 without restraints) Performing minimization step: 3671. Total energy = 412.6644 kcal/mol (412.6593 without restraints) Performing minimization step: 3672. Total energy = 412.6216 kcal/mol (412.6166 without restraints) Performing minimization step: 3673. Total energy = 412.5793 kcal/mol (412.5742 without restraints) Performing minimization step: 3674. Total energy = 412.5367 kcal/mol (412.5317 without restraints) Performing minimization step: 3675. Total energy = 412.4942 kcal/mol (412.4892 without restraints) Performing minimization step: 3676. Total energy = 412.4517 kcal/mol (412.4467 without restraints) Performing minimization step: 3677. Total energy = 412.4092 kcal/mol (412.4042 without restraints) Performing minimization step: 3678. Total energy = 412.3666 kcal/mol (412.3615 without restraints) Performing minimization step: 3679. Total energy = 412.3241 kcal/mol (412.3191 without restraints) Performing minimization step: 3680. Total energy = 412.2817 kcal/mol (412.2767 without restraints) Performing minimization step: 3681. Total energy = 412.2393 kcal/mol (412.2343 without restraints) Performing minimization step: 3682. Total energy = 412.1969 kcal/mol (412.1919 without restraints) Performing minimization step: 3683. Total energy = 412.1545 kcal/mol (412.1495 without restraints) Performing minimization step: 3684. Total energy = 412.1122 kcal/mol (412.1072 without restraints) Performing minimization step: 3685. Total energy = 412.0699 kcal/mol (412.0649 without restraints) Performing minimization step: 3686. Total energy = 412.0276 kcal/mol (412.0226 without restraints) Performing minimization step: 3687. Total energy = 411.9853 kcal/mol (411.9803 without restraints) Performing minimization step: 3688. Total energy = 411.9430 kcal/mol (411.9380 without restraints) Performing minimization step: 3689. Total energy = 411.9007 kcal/mol (411.8957 without restraints) Performing minimization step: 3690. Total energy = 411.8585 kcal/mol (411.8535 without restraints) Performing minimization step: 3691. Total energy = 411.8162 kcal/mol (411.8112 without restraints) Performing minimization step: 3692. Total energy = 411.7740 kcal/mol (411.7690 without restraints) Performing minimization step: 3693. Total energy = 411.7319 kcal/mol (411.7271 without restraints) Performing minimization step: 3694. Total energy = 411.6899 kcal/mol (411.6849 without restraints) Performing minimization step: 3695. Total energy = 411.6477 kcal/mol (411.6427 without restraints) Performing minimization step: 3696. Total energy = 411.6056 kcal/mol (411.6006 without restraints) Performing minimization step: 3697. Total energy = 411.5635 kcal/mol (411.5585 without restraints) Performing minimization step: 3698. Total energy = 411.5214 kcal/mol (411.5164 without restraints) Performing minimization step: 3699. Total energy = 411.4793 kcal/mol (411.4743 without restraints) Performing minimization step: 3700. Total energy = 411.4372 kcal/mol (411.4322 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 411.3951 kcal/mol (411.3902 without restraints) Performing minimization step: 3702. Total energy = 411.3531 kcal/mol (411.3481 without restraints) Performing minimization step: 3703. Total energy = 411.3111 kcal/mol (411.3061 without restraints) Performing minimization step: 3704. Total energy = 411.2691 kcal/mol (411.2641 without restraints) Performing minimization step: 3705. Total energy = 411.2271 kcal/mol (411.2221 without restraints) Performing minimization step: 3706. Total energy = 411.1851 kcal/mol (411.1802 without restraints) Performing minimization step: 3707. Total energy = 411.1432 kcal/mol (411.1382 without restraints) Performing minimization step: 3708. Total energy = 411.1010 kcal/mol (411.0961 without restraints) Performing minimization step: 3709. Total energy = 411.0591 kcal/mol (411.0542 without restraints) Performing minimization step: 3710. Total energy = 411.0172 kcal/mol (411.0123 without restraints) Performing minimization step: 3711. Total energy = 410.9753 kcal/mol (410.9704 without restraints) Performing minimization step: 3712. Total energy = 410.9335 kcal/mol (410.9285 without restraints) Performing minimization step: 3713. Total energy = 410.8916 kcal/mol (410.8867 without restraints) Performing minimization step: 3714. Total energy = 410.8498 kcal/mol (410.8448 without restraints) Performing minimization step: 3715. Total energy = 410.8080 kcal/mol (410.8030 without restraints) Performing minimization step: 3716. Total energy = 410.7662 kcal/mol (410.7612 without restraints) Performing minimization step: 3717. Total energy = 410.7244 kcal/mol (410.7194 without restraints) Performing minimization step: 3718. Total energy = 410.6826 kcal/mol (410.6777 without restraints) Performing minimization step: 3719. Total energy = 410.6409 kcal/mol (410.6359 without restraints) Performing minimization step: 3720. Total energy = 410.5991 kcal/mol (410.5942 without restraints) Performing minimization step: 3721. Total energy = 410.5574 kcal/mol (410.5525 without restraints) Performing minimization step: 3722. Total energy = 410.5157 kcal/mol (410.5108 without restraints) Performing minimization step: 3723. Total energy = 410.4740 kcal/mol (410.4691 without restraints) Performing minimization step: 3724. Total energy = 410.4324 kcal/mol (410.4275 without restraints) Performing minimization step: 3725. Total energy = 410.3907 kcal/mol (410.3858 without restraints) Performing minimization step: 3726. Total energy = 410.3491 kcal/mol (410.3442 without restraints) Performing minimization step: 3727. Total energy = 410.3075 kcal/mol (410.3026 without restraints) Performing minimization step: 3728. Total energy = 410.2659 kcal/mol (410.2610 without restraints) Performing minimization step: 3729. Total energy = 410.2243 kcal/mol (410.2194 without restraints) Performing minimization step: 3730. Total energy = 410.1827 kcal/mol (410.1778 without restraints) Performing minimization step: 3731. Total energy = 410.1412 kcal/mol (410.1363 without restraints) Performing minimization step: 3732. Total energy = 410.0997 kcal/mol (410.0948 without restraints) Performing minimization step: 3733. Total energy = 410.0582 kcal/mol (410.0533 without restraints) Performing minimization step: 3734. Total energy = 410.0167 kcal/mol (410.0118 without restraints) Performing minimization step: 3735. Total energy = 409.9752 kcal/mol (409.9703 without restraints) Performing minimization step: 3736. Total energy = 409.9339 kcal/mol (409.9290 without restraints) Performing minimization step: 3737. Total energy = 409.8925 kcal/mol (409.8876 without restraints) Performing minimization step: 3738. Total energy = 409.8511 kcal/mol (409.8462 without restraints) Performing minimization step: 3739. Total energy = 409.8097 kcal/mol (409.8048 without restraints) Performing minimization step: 3740. Total energy = 409.7683 kcal/mol (409.7634 without restraints) Performing minimization step: 3741. Total energy = 409.7269 kcal/mol (409.7220 without restraints) Performing minimization step: 3742. Total energy = 409.6855 kcal/mol (409.6806 without restraints) Performing minimization step: 3743. Total energy = 409.6442 kcal/mol (409.6393 without restraints) Performing minimization step: 3744. Total energy = 409.6029 kcal/mol (409.5980 without restraints) Performing minimization step: 3745. Total energy = 409.5616 kcal/mol (409.5567 without restraints) Performing minimization step: 3746. Total energy = 409.5203 kcal/mol (409.5154 without restraints) Performing minimization step: 3747. Total energy = 409.4790 kcal/mol (409.4741 without restraints) Performing minimization step: 3748. Total energy = 409.4377 kcal/mol (409.4328 without restraints) Performing minimization step: 3749. Total energy = 409.3965 kcal/mol (409.3916 without restraints) Performing minimization step: 3750. Total energy = 409.3553 kcal/mol (409.3504 without restraints) Performing minimization step: 3751. Total energy = 409.3141 kcal/mol (409.3093 without restraints) Performing minimization step: 3752. Total energy = 409.2729 kcal/mol (409.2681 without restraints) Performing minimization step: 3753. Total energy = 409.2317 kcal/mol (409.2269 without restraints) Performing minimization step: 3754. Total energy = 409.1906 kcal/mol (409.1857 without restraints) Performing minimization step: 3755. Total energy = 409.1494 kcal/mol (409.1446 without restraints) Performing minimization step: 3756. Total energy = 409.1083 kcal/mol (409.1035 without restraints) Performing minimization step: 3757. Total energy = 409.0672 kcal/mol (409.0623 without restraints) Performing minimization step: 3758. Total energy = 409.0261 kcal/mol (409.0213 without restraints) Performing minimization step: 3759. Total energy = 408.9850 kcal/mol (408.9802 without restraints) Performing minimization step: 3760. Total energy = 408.9440 kcal/mol (408.9391 without restraints) Performing minimization step: 3761. Total energy = 408.9029 kcal/mol (408.8981 without restraints) Performing minimization step: 3762. Total energy = 408.8619 kcal/mol (408.8570 without restraints) Performing minimization step: 3763. Total energy = 408.8209 kcal/mol (408.8160 without restraints) Performing minimization step: 3764. Total energy = 408.7799 kcal/mol (408.7750 without restraints) Performing minimization step: 3765. Total energy = 408.7389 kcal/mol (408.7341 without restraints) Performing minimization step: 3766. Total energy = 408.6980 kcal/mol (408.6931 without restraints) Performing minimization step: 3767. Total energy = 408.6570 kcal/mol (408.6522 without restraints) Performing minimization step: 3768. Total energy = 408.6161 kcal/mol (408.6113 without restraints) Performing minimization step: 3769. Total energy = 408.5752 kcal/mol (408.5703 without restraints) Performing minimization step: 3770. Total energy = 408.5343 kcal/mol (408.5294 without restraints) Performing minimization step: 3771. Total energy = 408.4934 kcal/mol (408.4886 without restraints) Performing minimization step: 3772. Total energy = 408.4527 kcal/mol (408.4479 without restraints) Performing minimization step: 3773. Total energy = 408.4119 kcal/mol (408.4071 without restraints) Performing minimization step: 3774. Total energy = 408.3711 kcal/mol (408.3662 without restraints) Performing minimization step: 3775. Total energy = 408.3300 kcal/mol (408.3252 without restraints) Performing minimization step: 3776. Total energy = 408.2892 kcal/mol (408.2844 without restraints) Performing minimization step: 3777. Total energy = 408.2484 kcal/mol (408.2436 without restraints) Performing minimization step: 3778. Total energy = 408.2076 kcal/mol (408.2028 without restraints) Performing minimization step: 3779. Total energy = 408.1669 kcal/mol (408.1621 without restraints) Performing minimization step: 3780. Total energy = 408.1260 kcal/mol (408.1211 without restraints) Performing minimization step: 3781. Total energy = 408.0853 kcal/mol (408.0805 without restraints) Performing minimization step: 3782. Total energy = 408.0446 kcal/mol (408.0398 without restraints) Performing minimization step: 3783. Total energy = 408.0038 kcal/mol (407.9990 without restraints) Performing minimization step: 3784. Total energy = 407.9632 kcal/mol (407.9584 without restraints) Performing minimization step: 3785. Total energy = 407.9225 kcal/mol (407.9177 without restraints) Performing minimization step: 3786. Total energy = 407.8819 kcal/mol (407.8771 without restraints) Performing minimization step: 3787. Total energy = 407.8413 kcal/mol (407.8365 without restraints) Performing minimization step: 3788. Total energy = 407.8007 kcal/mol (407.7959 without restraints) Performing minimization step: 3789. Total energy = 407.7601 kcal/mol (407.7553 without restraints) Performing minimization step: 3790. Total energy = 407.7195 kcal/mol (407.7147 without restraints) Performing minimization step: 3791. Total energy = 407.6789 kcal/mol (407.6741 without restraints) Performing minimization step: 3792. Total energy = 407.6384 kcal/mol (407.6336 without restraints) Performing minimization step: 3793. Total energy = 407.5979 kcal/mol (407.5931 without restraints) Performing minimization step: 3794. Total energy = 407.5573 kcal/mol (407.5525 without restraints) Performing minimization step: 3795. Total energy = 407.5168 kcal/mol (407.5120 without restraints) Performing minimization step: 3796. Total energy = 407.4763 kcal/mol (407.4716 without restraints) Performing minimization step: 3797. Total energy = 407.4359 kcal/mol (407.4311 without restraints) Performing minimization step: 3798. Total energy = 407.3954 kcal/mol (407.3906 without restraints) Performing minimization step: 3799. Total energy = 407.3550 kcal/mol (407.3502 without restraints) Performing minimization step: 3800. Total energy = 407.3146 kcal/mol (407.3098 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 407.2742 kcal/mol (407.2694 without restraints) Performing minimization step: 3802. Total energy = 407.2338 kcal/mol (407.2290 without restraints) Performing minimization step: 3803. Total energy = 407.1934 kcal/mol (407.1886 without restraints) Performing minimization step: 3804. Total energy = 407.1531 kcal/mol (407.1483 without restraints) Performing minimization step: 3805. Total energy = 407.1127 kcal/mol (407.1080 without restraints) Performing minimization step: 3806. Total energy = 407.0724 kcal/mol (407.0676 without restraints) Performing minimization step: 3807. Total energy = 407.0321 kcal/mol (407.0273 without restraints) Performing minimization step: 3808. Total energy = 406.9918 kcal/mol (406.9870 without restraints) Performing minimization step: 3809. Total energy = 406.9515 kcal/mol (406.9468 without restraints) Performing minimization step: 3810. Total energy = 406.9113 kcal/mol (406.9066 without restraints) Performing minimization step: 3811. Total energy = 406.8711 kcal/mol (406.8664 without restraints) Performing minimization step: 3812. Total energy = 406.8309 kcal/mol (406.8261 without restraints) Performing minimization step: 3813. Total energy = 406.7907 kcal/mol (406.7859 without restraints) Performing minimization step: 3814. Total energy = 406.7505 kcal/mol (406.7457 without restraints) Performing minimization step: 3815. Total energy = 406.7103 kcal/mol (406.7056 without restraints) Performing minimization step: 3816. Total energy = 406.6699 kcal/mol (406.6652 without restraints) Performing minimization step: 3817. Total energy = 406.6298 kcal/mol (406.6250 without restraints) Performing minimization step: 3818. Total energy = 406.5897 kcal/mol (406.5849 without restraints) Performing minimization step: 3819. Total energy = 406.5495 kcal/mol (406.5448 without restraints) Performing minimization step: 3820. Total energy = 406.5094 kcal/mol (406.5047 without restraints) Performing minimization step: 3821. Total energy = 406.4693 kcal/mol (406.4646 without restraints) Performing minimization step: 3822. Total energy = 406.4293 kcal/mol (406.4245 without restraints) Performing minimization step: 3823. Total energy = 406.3890 kcal/mol (406.3843 without restraints) Performing minimization step: 3824. Total energy = 406.3490 kcal/mol (406.3443 without restraints) Performing minimization step: 3825. Total energy = 406.3090 kcal/mol (406.3042 without restraints) Performing minimization step: 3826. Total energy = 406.2690 kcal/mol (406.2642 without restraints) Performing minimization step: 3827. Total energy = 406.2290 kcal/mol (406.2242 without restraints) Performing minimization step: 3828. Total energy = 406.1890 kcal/mol (406.1843 without restraints) Performing minimization step: 3829. Total energy = 406.1490 kcal/mol (406.1443 without restraints) Performing minimization step: 3830. Total energy = 406.1091 kcal/mol (406.1044 without restraints) Performing minimization step: 3831. Total energy = 406.0692 kcal/mol (406.0645 without restraints) Performing minimization step: 3832. Total energy = 406.0293 kcal/mol (406.0246 without restraints) Performing minimization step: 3833. Total energy = 405.9894 kcal/mol (405.9847 without restraints) Performing minimization step: 3834. Total energy = 405.9495 kcal/mol (405.9448 without restraints) Performing minimization step: 3835. Total energy = 405.9094 kcal/mol (405.9047 without restraints) Performing minimization step: 3836. Total energy = 405.8696 kcal/mol (405.8649 without restraints) Performing minimization step: 3837. Total energy = 405.8297 kcal/mol (405.8250 without restraints) Performing minimization step: 3838. Total energy = 405.7899 kcal/mol (405.7852 without restraints) Performing minimization step: 3839. Total energy = 405.7501 kcal/mol (405.7454 without restraints) Performing minimization step: 3840. Total energy = 405.7105 kcal/mol (405.7058 without restraints) Performing minimization step: 3841. Total energy = 405.6707 kcal/mol (405.6660 without restraints) Performing minimization step: 3842. Total energy = 405.6312 kcal/mol (405.6265 without restraints) Performing minimization step: 3843. Total energy = 405.5914 kcal/mol (405.5867 without restraints) Performing minimization step: 3844. Total energy = 405.5517 kcal/mol (405.5470 without restraints) Performing minimization step: 3845. Total energy = 405.5120 kcal/mol (405.5073 without restraints) Performing minimization step: 3846. Total energy = 405.4723 kcal/mol (405.4675 without restraints) Performing minimization step: 3847. Total energy = 405.4326 kcal/mol (405.4279 without restraints) Performing minimization step: 3848. Total energy = 405.3929 kcal/mol (405.3882 without restraints) Performing minimization step: 3849. Total energy = 405.3532 kcal/mol (405.3486 without restraints) Performing minimization step: 3850. Total energy = 405.3136 kcal/mol (405.3089 without restraints) Performing minimization step: 3851. Total energy = 405.2742 kcal/mol (405.2695 without restraints) Performing minimization step: 3852. Total energy = 405.2346 kcal/mol (405.2299 without restraints) Performing minimization step: 3853. Total energy = 405.1950 kcal/mol (405.1903 without restraints) Performing minimization step: 3854. Total energy = 405.1554 kcal/mol (405.1508 without restraints) Performing minimization step: 3855. Total energy = 405.1159 kcal/mol (405.1112 without restraints) Performing minimization step: 3856. Total energy = 405.0763 kcal/mol (405.0716 without restraints) Performing minimization step: 3857. Total energy = 405.0369 kcal/mol (405.0323 without restraints) Performing minimization step: 3858. Total energy = 404.9974 kcal/mol (404.9928 without restraints) Performing minimization step: 3859. Total energy = 404.9579 kcal/mol (404.9533 without restraints) Performing minimization step: 3860. Total energy = 404.9185 kcal/mol (404.9138 without restraints) Performing minimization step: 3861. Total energy = 404.8789 kcal/mol (404.8743 without restraints) Performing minimization step: 3862. Total energy = 404.8395 kcal/mol (404.8348 without restraints) Performing minimization step: 3863. Total energy = 404.8000 kcal/mol (404.7954 without restraints) Performing minimization step: 3864. Total energy = 404.7606 kcal/mol (404.7560 without restraints) Performing minimization step: 3865. Total energy = 404.7212 kcal/mol (404.7166 without restraints) Performing minimization step: 3866. Total energy = 404.6818 kcal/mol (404.6772 without restraints) Performing minimization step: 3867. Total energy = 404.6424 kcal/mol (404.6378 without restraints) Performing minimization step: 3868. Total energy = 404.6031 kcal/mol (404.5984 without restraints) Performing minimization step: 3869. Total energy = 404.5637 kcal/mol (404.5591 without restraints) Performing minimization step: 3870. Total energy = 404.5244 kcal/mol (404.5198 without restraints) Performing minimization step: 3871. Total energy = 404.4849 kcal/mol (404.4802 without restraints) Performing minimization step: 3872. Total energy = 404.4456 kcal/mol (404.4410 without restraints) Performing minimization step: 3873. Total energy = 404.4059 kcal/mol (404.4013 without restraints) Performing minimization step: 3874. Total energy = 404.3668 kcal/mol (404.3623 without restraints) Performing minimization step: 3875. Total energy = 404.3277 kcal/mol (404.3230 without restraints) Performing minimization step: 3876. Total energy = 404.2884 kcal/mol (404.2838 without restraints) Performing minimization step: 3877. Total energy = 404.2492 kcal/mol (404.2446 without restraints) Performing minimization step: 3878. Total energy = 404.2100 kcal/mol (404.2054 without restraints) Performing minimization step: 3879. Total energy = 404.1708 kcal/mol (404.1662 without restraints) Performing minimization step: 3880. Total energy = 404.1317 kcal/mol (404.1270 without restraints) Performing minimization step: 3881. Total energy = 404.0925 kcal/mol (404.0879 without restraints) Performing minimization step: 3882. Total energy = 404.0534 kcal/mol (404.0487 without restraints) Performing minimization step: 3883. Total energy = 404.0142 kcal/mol (404.0096 without restraints) Performing minimization step: 3884. Total energy = 403.9749 kcal/mol (403.9703 without restraints) Performing minimization step: 3885. Total energy = 403.9358 kcal/mol (403.9312 without restraints) Performing minimization step: 3886. Total energy = 403.8966 kcal/mol (403.8918 without restraints) Performing minimization step: 3887. Total energy = 403.8574 kcal/mol (403.8528 without restraints) Performing minimization step: 3888. Total energy = 403.8183 kcal/mol (403.8137 without restraints) Performing minimization step: 3889. Total energy = 403.7793 kcal/mol (403.7747 without restraints) Performing minimization step: 3890. Total energy = 403.7403 kcal/mol (403.7356 without restraints) Performing minimization step: 3891. Total energy = 403.7012 kcal/mol (403.6966 without restraints) Performing minimization step: 3892. Total energy = 403.6622 kcal/mol (403.6576 without restraints) Performing minimization step: 3893. Total energy = 403.6233 kcal/mol (403.6187 without restraints) Performing minimization step: 3894. Total energy = 403.5843 kcal/mol (403.5797 without restraints) Performing minimization step: 3895. Total energy = 403.5453 kcal/mol (403.5407 without restraints) Performing minimization step: 3896. Total energy = 403.5064 kcal/mol (403.5018 without restraints) Performing minimization step: 3897. Total energy = 403.4675 kcal/mol (403.4629 without restraints) Performing minimization step: 3898. Total energy = 403.4286 kcal/mol (403.4240 without restraints) Performing minimization step: 3899. Total energy = 403.3897 kcal/mol (403.3851 without restraints) Performing minimization step: 3900. Total energy = 403.3508 kcal/mol (403.3462 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 403.3120 kcal/mol (403.3074 without restraints) Performing minimization step: 3902. Total energy = 403.2731 kcal/mol (403.2685 without restraints) Performing minimization step: 3903. Total energy = 403.2342 kcal/mol (403.2297 without restraints) Performing minimization step: 3904. Total energy = 403.1954 kcal/mol (403.1909 without restraints) Performing minimization step: 3905. Total energy = 403.1566 kcal/mol (403.1521 without restraints) Performing minimization step: 3906. Total energy = 403.1178 kcal/mol (403.1133 without restraints) Performing minimization step: 3907. Total energy = 403.0791 kcal/mol (403.0745 without restraints) Performing minimization step: 3908. Total energy = 403.0403 kcal/mol (403.0357 without restraints) Performing minimization step: 3909. Total energy = 403.0016 kcal/mol (402.9970 without restraints) Performing minimization step: 3910. Total energy = 402.9628 kcal/mol (402.9583 without restraints) Performing minimization step: 3911. Total energy = 402.9241 kcal/mol (402.9196 without restraints) Performing minimization step: 3912. Total energy = 402.8854 kcal/mol (402.8809 without restraints) Performing minimization step: 3913. Total energy = 402.8467 kcal/mol (402.8422 without restraints) Performing minimization step: 3914. Total energy = 402.8081 kcal/mol (402.8035 without restraints) Performing minimization step: 3915. Total energy = 402.7694 kcal/mol (402.7649 without restraints) Performing minimization step: 3916. Total energy = 402.7306 kcal/mol (402.7260 without restraints) Performing minimization step: 3917. Total energy = 402.6919 kcal/mol (402.6874 without restraints) Performing minimization step: 3918. Total energy = 402.6533 kcal/mol (402.6488 without restraints) Performing minimization step: 3919. Total energy = 402.6147 kcal/mol (402.6102 without restraints) Performing minimization step: 3920. Total energy = 402.5762 kcal/mol (402.5716 without restraints) Performing minimization step: 3921. Total energy = 402.5376 kcal/mol (402.5331 without restraints) Performing minimization step: 3922. Total energy = 402.4991 kcal/mol (402.4945 without restraints) Performing minimization step: 3923. Total energy = 402.4605 kcal/mol (402.4560 without restraints) Performing minimization step: 3924. Total energy = 402.4222 kcal/mol (402.4177 without restraints) Performing minimization step: 3925. Total energy = 402.3837 kcal/mol (402.3792 without restraints) Performing minimization step: 3926. Total energy = 402.3452 kcal/mol (402.3407 without restraints) Performing minimization step: 3927. Total energy = 402.3068 kcal/mol (402.3022 without restraints) Performing minimization step: 3928. Total energy = 402.2683 kcal/mol (402.2638 without restraints) Performing minimization step: 3929. Total energy = 402.2299 kcal/mol (402.2253 without restraints) Performing minimization step: 3930. Total energy = 402.1914 kcal/mol (402.1869 without restraints) Performing minimization step: 3931. Total energy = 402.1530 kcal/mol (402.1485 without restraints) Performing minimization step: 3932. Total energy = 402.1146 kcal/mol (402.1101 without restraints) Performing minimization step: 3933. Total energy = 402.0762 kcal/mol (402.0717 without restraints) Performing minimization step: 3934. Total energy = 402.0376 kcal/mol (402.0328 without restraints) Performing minimization step: 3935. Total energy = 401.9989 kcal/mol (401.9943 without restraints) Performing minimization step: 3936. Total energy = 401.9605 kcal/mol (401.9559 without restraints) Performing minimization step: 3937. Total energy = 401.9221 kcal/mol (401.9176 without restraints) Performing minimization step: 3938. Total energy = 401.8838 kcal/mol (401.8793 without restraints) Performing minimization step: 3939. Total energy = 401.8457 kcal/mol (401.8412 without restraints) Performing minimization step: 3940. Total energy = 401.8074 kcal/mol (401.8029 without restraints) Performing minimization step: 3941. Total energy = 401.7692 kcal/mol (401.7647 without restraints) Performing minimization step: 3942. Total energy = 401.7309 kcal/mol (401.7264 without restraints) Performing minimization step: 3943. Total energy = 401.6926 kcal/mol (401.6881 without restraints) Performing minimization step: 3944. Total energy = 401.6545 kcal/mol (401.6500 without restraints) Performing minimization step: 3945. Total energy = 401.6163 kcal/mol (401.6118 without restraints) Performing minimization step: 3946. Total energy = 401.5781 kcal/mol (401.5736 without restraints) Performing minimization step: 3947. Total energy = 401.5399 kcal/mol (401.5354 without restraints) Performing minimization step: 3948. Total energy = 401.5018 kcal/mol (401.4973 without restraints) Performing minimization step: 3949. Total energy = 401.4636 kcal/mol (401.4591 without restraints) Performing minimization step: 3950. Total energy = 401.4255 kcal/mol (401.4210 without restraints) Performing minimization step: 3951. Total energy = 401.3876 kcal/mol (401.3831 without restraints) Performing minimization step: 3952. Total energy = 401.3495 kcal/mol (401.3450 without restraints) Performing minimization step: 3953. Total energy = 401.3114 kcal/mol (401.3069 without restraints) Performing minimization step: 3954. Total energy = 401.2733 kcal/mol (401.2688 without restraints) Performing minimization step: 3955. Total energy = 401.2352 kcal/mol (401.2307 without restraints) Performing minimization step: 3956. Total energy = 401.1972 kcal/mol (401.1927 without restraints) Performing minimization step: 3957. Total energy = 401.1591 kcal/mol (401.1547 without restraints) Performing minimization step: 3958. Total energy = 401.1211 kcal/mol (401.1166 without restraints) Performing minimization step: 3959. Total energy = 401.0831 kcal/mol (401.0786 without restraints) Performing minimization step: 3960. Total energy = 401.0451 kcal/mol (401.0406 without restraints) Performing minimization step: 3961. Total energy = 401.0071 kcal/mol (401.0027 without restraints) Performing minimization step: 3962. Total energy = 400.9692 kcal/mol (400.9647 without restraints) Performing minimization step: 3963. Total energy = 400.9312 kcal/mol (400.9267 without restraints) Performing minimization step: 3964. Total energy = 400.8933 kcal/mol (400.8888 without restraints) Performing minimization step: 3965. Total energy = 400.8554 kcal/mol (400.8509 without restraints) Performing minimization step: 3966. Total energy = 400.8175 kcal/mol (400.8130 without restraints) Performing minimization step: 3967. Total energy = 400.7794 kcal/mol (400.7749 without restraints) Performing minimization step: 3968. Total energy = 400.7417 kcal/mol (400.7372 without restraints) Performing minimization step: 3969. Total energy = 400.7038 kcal/mol (400.6994 without restraints) Performing minimization step: 3970. Total energy = 400.6662 kcal/mol (400.6617 without restraints) Performing minimization step: 3971. Total energy = 400.6288 kcal/mol (400.6243 without restraints) Performing minimization step: 3972. Total energy = 400.5910 kcal/mol (400.5865 without restraints) Performing minimization step: 3973. Total energy = 400.5532 kcal/mol (400.5487 without restraints) Performing minimization step: 3974. Total energy = 400.5154 kcal/mol (400.5109 without restraints) Performing minimization step: 3975. Total energy = 400.4776 kcal/mol (400.4731 without restraints) Performing minimization step: 3976. Total energy = 400.4398 kcal/mol (400.4354 without restraints) Performing minimization step: 3977. Total energy = 400.4021 kcal/mol (400.3976 without restraints) Performing minimization step: 3978. Total energy = 400.3643 kcal/mol (400.3599 without restraints) Performing minimization step: 3979. Total energy = 400.3266 kcal/mol (400.3222 without restraints) Performing minimization step: 3980. Total energy = 400.2889 kcal/mol (400.2845 without restraints) Performing minimization step: 3981. Total energy = 400.2512 kcal/mol (400.2468 without restraints) Performing minimization step: 3982. Total energy = 400.2135 kcal/mol (400.2091 without restraints) Performing minimization step: 3983. Total energy = 400.1759 kcal/mol (400.1714 without restraints) Performing minimization step: 3984. Total energy = 400.1382 kcal/mol (400.1338 without restraints) Performing minimization step: 3985. Total energy = 400.1006 kcal/mol (400.0962 without restraints) Performing minimization step: 3986. Total energy = 400.0632 kcal/mol (400.0587 without restraints) Performing minimization step: 3987. Total energy = 400.0256 kcal/mol (400.0211 without restraints) Performing minimization step: 3988. Total energy = 399.9879 kcal/mol (399.9833 without restraints) Performing minimization step: 3989. Total energy = 399.9502 kcal/mol (399.9457 without restraints) Performing minimization step: 3990. Total energy = 399.9126 kcal/mol (399.9082 without restraints) Performing minimization step: 3991. Total energy = 399.8750 kcal/mol (399.8706 without restraints) Performing minimization step: 3992. Total energy = 399.8375 kcal/mol (399.8331 without restraints) Performing minimization step: 3993. Total energy = 399.8000 kcal/mol (399.7956 without restraints) Performing minimization step: 3994. Total energy = 399.7623 kcal/mol (399.7579 without restraints) Performing minimization step: 3995. Total energy = 399.7248 kcal/mol (399.7204 without restraints) Performing minimization step: 3996. Total energy = 399.6873 kcal/mol (399.6829 without restraints) Performing minimization step: 3997. Total energy = 399.6497 kcal/mol (399.6453 without restraints) Performing minimization step: 3998. Total energy = 399.6122 kcal/mol (399.6078 without restraints) Performing minimization step: 3999. Total energy = 399.5748 kcal/mol (399.5704 without restraints) Performing minimization step: 4000. Total energy = 399.5374 kcal/mol (399.5330 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 399.5000 kcal/mol (399.4956 without restraints) Performing minimization step: 4002. Total energy = 399.4626 kcal/mol (399.4582 without restraints) Performing minimization step: 4003. Total energy = 399.4252 kcal/mol (399.4208 without restraints) Performing minimization step: 4004. Total energy = 399.3878 kcal/mol (399.3834 without restraints) Performing minimization step: 4005. Total energy = 399.3505 kcal/mol (399.3461 without restraints) Performing minimization step: 4006. Total energy = 399.3132 kcal/mol (399.3088 without restraints) Performing minimization step: 4007. Total energy = 399.2758 kcal/mol (399.2714 without restraints) Performing minimization step: 4008. Total energy = 399.2385 kcal/mol (399.2341 without restraints) Performing minimization step: 4009. Total energy = 399.2012 kcal/mol (399.1968 without restraints) Performing minimization step: 4010. Total energy = 399.1640 kcal/mol (399.1596 without restraints) Performing minimization step: 4011. Total energy = 399.1267 kcal/mol (399.1223 without restraints) Performing minimization step: 4012. Total energy = 399.0894 kcal/mol (399.0850 without restraints) Performing minimization step: 4013. Total energy = 399.0522 kcal/mol (399.0478 without restraints) Performing minimization step: 4014. Total energy = 399.0152 kcal/mol (399.0108 without restraints) Performing minimization step: 4015. Total energy = 398.9780 kcal/mol (398.9736 without restraints) Performing minimization step: 4016. Total energy = 398.9408 kcal/mol (398.9364 without restraints) Performing minimization step: 4017. Total energy = 398.9036 kcal/mol (398.8993 without restraints) Performing minimization step: 4018. Total energy = 398.8665 kcal/mol (398.8621 without restraints) Performing minimization step: 4019. Total energy = 398.8294 kcal/mol (398.8250 without restraints) Performing minimization step: 4020. Total energy = 398.7922 kcal/mol (398.7878 without restraints) Performing minimization step: 4021. Total energy = 398.7551 kcal/mol (398.7507 without restraints) Performing minimization step: 4022. Total energy = 398.7180 kcal/mol (398.7136 without restraints) Performing minimization step: 4023. Total energy = 398.6809 kcal/mol (398.6765 without restraints) Performing minimization step: 4024. Total energy = 398.6438 kcal/mol (398.6395 without restraints) Performing minimization step: 4025. Total energy = 398.6068 kcal/mol (398.6024 without restraints) Performing minimization step: 4026. Total energy = 398.5697 kcal/mol (398.5653 without restraints) Performing minimization step: 4027. Total energy = 398.5327 kcal/mol (398.5283 without restraints) Performing minimization step: 4028. Total energy = 398.4956 kcal/mol (398.4912 without restraints) Performing minimization step: 4029. Total energy = 398.4586 kcal/mol (398.4542 without restraints) Performing minimization step: 4030. Total energy = 398.4216 kcal/mol (398.4172 without restraints) Performing minimization step: 4031. Total energy = 398.3846 kcal/mol (398.3802 without restraints) Performing minimization step: 4032. Total energy = 398.3476 kcal/mol (398.3433 without restraints) Performing minimization step: 4033. Total energy = 398.3107 kcal/mol (398.3063 without restraints) Performing minimization step: 4034. Total energy = 398.2737 kcal/mol (398.2694 without restraints) Performing minimization step: 4035. Total energy = 398.2368 kcal/mol (398.2324 without restraints) Performing minimization step: 4036. Total energy = 398.1998 kcal/mol (398.1955 without restraints) Performing minimization step: 4037. Total energy = 398.1628 kcal/mol (398.1584 without restraints) Performing minimization step: 4038. Total energy = 398.1259 kcal/mol (398.1215 without restraints) Performing minimization step: 4039. Total energy = 398.0890 kcal/mol (398.0846 without restraints) Performing minimization step: 4040. Total energy = 398.0520 kcal/mol (398.0476 without restraints) Performing minimization step: 4041. Total energy = 398.0152 kcal/mol (398.0108 without restraints) Performing minimization step: 4042. Total energy = 397.9783 kcal/mol (397.9740 without restraints) Performing minimization step: 4043. Total energy = 397.9415 kcal/mol (397.9372 without restraints) Performing minimization step: 4044. Total energy = 397.9046 kcal/mol (397.9002 without restraints) Performing minimization step: 4045. Total energy = 397.8677 kcal/mol (397.8634 without restraints) Performing minimization step: 4046. Total energy = 397.8309 kcal/mol (397.8266 without restraints) Performing minimization step: 4047. Total energy = 397.7942 kcal/mol (397.7898 without restraints) Performing minimization step: 4048. Total energy = 397.7574 kcal/mol (397.7531 without restraints) Performing minimization step: 4049. Total energy = 397.7207 kcal/mol (397.7164 without restraints) Performing minimization step: 4050. Total energy = 397.6840 kcal/mol (397.6796 without restraints) Performing minimization step: 4051. Total energy = 397.6473 kcal/mol (397.6429 without restraints) Performing minimization step: 4052. Total energy = 397.6106 kcal/mol (397.6062 without restraints) Performing minimization step: 4053. Total energy = 397.5739 kcal/mol (397.5696 without restraints) Performing minimization step: 4054. Total energy = 397.5373 kcal/mol (397.5329 without restraints) Performing minimization step: 4055. Total energy = 397.5006 kcal/mol (397.4963 without restraints) Performing minimization step: 4056. Total energy = 397.4640 kcal/mol (397.4597 without restraints) Performing minimization step: 4057. Total energy = 397.4274 kcal/mol (397.4231 without restraints) Performing minimization step: 4058. Total energy = 397.3908 kcal/mol (397.3865 without restraints) Performing minimization step: 4059. Total energy = 397.3542 kcal/mol (397.3499 without restraints) Performing minimization step: 4060. Total energy = 397.3176 kcal/mol (397.3133 without restraints) Performing minimization step: 4061. Total energy = 397.2810 kcal/mol (397.2767 without restraints) Performing minimization step: 4062. Total energy = 397.2445 kcal/mol (397.2402 without restraints) Performing minimization step: 4063. Total energy = 397.2079 kcal/mol (397.2036 without restraints) Performing minimization step: 4064. Total energy = 397.1714 kcal/mol (397.1671 without restraints) Performing minimization step: 4065. Total energy = 397.1349 kcal/mol (397.1306 without restraints) Performing minimization step: 4066. Total energy = 397.0984 kcal/mol (397.0941 without restraints) Performing minimization step: 4067. Total energy = 397.0619 kcal/mol (397.0576 without restraints) Performing minimization step: 4068. Total energy = 397.0252 kcal/mol (397.0209 without restraints) Performing minimization step: 4069. Total energy = 396.9888 kcal/mol (396.9845 without restraints) Performing minimization step: 4070. Total energy = 396.9524 kcal/mol (396.9482 without restraints) Performing minimization step: 4071. Total energy = 396.9161 kcal/mol (396.9118 without restraints) Performing minimization step: 4072. Total energy = 396.8795 kcal/mol (396.8752 without restraints) Performing minimization step: 4073. Total energy = 396.8431 kcal/mol (396.8388 without restraints) Performing minimization step: 4074. Total energy = 396.8067 kcal/mol (396.8024 without restraints) Performing minimization step: 4075. Total energy = 396.7703 kcal/mol (396.7660 without restraints) Performing minimization step: 4076. Total energy = 396.7339 kcal/mol (396.7296 without restraints) Performing minimization step: 4077. Total energy = 396.6976 kcal/mol (396.6933 without restraints) Performing minimization step: 4078. Total energy = 396.6612 kcal/mol (396.6569 without restraints) Performing minimization step: 4079. Total energy = 396.6249 kcal/mol (396.6206 without restraints) Performing minimization step: 4080. Total energy = 396.5886 kcal/mol (396.5843 without restraints) Performing minimization step: 4081. Total energy = 396.5523 kcal/mol (396.5480 without restraints) Performing minimization step: 4082. Total energy = 396.5160 kcal/mol (396.5117 without restraints) Performing minimization step: 4083. Total energy = 396.4798 kcal/mol (396.4755 without restraints) Performing minimization step: 4084. Total energy = 396.4435 kcal/mol (396.4392 without restraints) Performing minimization step: 4085. Total energy = 396.4073 kcal/mol (396.4030 without restraints) Performing minimization step: 4086. Total energy = 396.3710 kcal/mol (396.3668 without restraints) Performing minimization step: 4087. Total energy = 396.3348 kcal/mol (396.3306 without restraints) Performing minimization step: 4088. Total energy = 396.2986 kcal/mol (396.2944 without restraints) Performing minimization step: 4089. Total energy = 396.2624 kcal/mol (396.2581 without restraints) Performing minimization step: 4090. Total energy = 396.2262 kcal/mol (396.2220 without restraints) Performing minimization step: 4091. Total energy = 396.1901 kcal/mol (396.1858 without restraints) Performing minimization step: 4092. Total energy = 396.1539 kcal/mol (396.1497 without restraints) Performing minimization step: 4093. Total energy = 396.1180 kcal/mol (396.1137 without restraints) Performing minimization step: 4094. Total energy = 396.0819 kcal/mol (396.0776 without restraints) Performing minimization step: 4095. Total energy = 396.0457 kcal/mol (396.0415 without restraints) Performing minimization step: 4096. Total energy = 396.0097 kcal/mol (396.0054 without restraints) Performing minimization step: 4097. Total energy = 395.9736 kcal/mol (395.9694 without restraints) Performing minimization step: 4098. Total energy = 395.9376 kcal/mol (395.9333 without restraints) Performing minimization step: 4099. Total energy = 395.9015 kcal/mol (395.8973 without restraints) Performing minimization step: 4100. Total energy = 395.8655 kcal/mol (395.8612 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 395.8295 kcal/mol (395.8252 without restraints) Performing minimization step: 4102. Total energy = 395.7935 kcal/mol (395.7892 without restraints) Performing minimization step: 4103. Total energy = 395.7573 kcal/mol (395.7530 without restraints) Performing minimization step: 4104. Total energy = 395.7213 kcal/mol (395.7171 without restraints) Performing minimization step: 4105. Total energy = 395.6853 kcal/mol (395.6811 without restraints) Performing minimization step: 4106. Total energy = 395.6494 kcal/mol (395.6451 without restraints) Performing minimization step: 4107. Total energy = 395.6137 kcal/mol (395.6094 without restraints) Performing minimization step: 4108. Total energy = 395.5777 kcal/mol (395.5735 without restraints) Performing minimization step: 4109. Total energy = 395.5418 kcal/mol (395.5376 without restraints) Performing minimization step: 4110. Total energy = 395.5059 kcal/mol (395.5017 without restraints) Performing minimization step: 4111. Total energy = 395.4700 kcal/mol (395.4658 without restraints) Performing minimization step: 4112. Total energy = 395.4342 kcal/mol (395.4299 without restraints) Performing minimization step: 4113. Total energy = 395.3983 kcal/mol (395.3941 without restraints) Performing minimization step: 4114. Total energy = 395.3624 kcal/mol (395.3582 without restraints) Performing minimization step: 4115. Total energy = 395.3266 kcal/mol (395.3223 without restraints) Performing minimization step: 4116. Total energy = 395.2908 kcal/mol (395.2866 without restraints) Performing minimization step: 4117. Total energy = 395.2550 kcal/mol (395.2508 without restraints) Performing minimization step: 4118. Total energy = 395.2192 kcal/mol (395.2150 without restraints) Performing minimization step: 4119. Total energy = 395.1834 kcal/mol (395.1792 without restraints) Performing minimization step: 4120. Total energy = 395.1476 kcal/mol (395.1434 without restraints) Performing minimization step: 4121. Total energy = 395.1119 kcal/mol (395.1077 without restraints) Performing minimization step: 4122. Total energy = 395.0761 kcal/mol (395.0719 without restraints) Performing minimization step: 4123. Total energy = 395.0404 kcal/mol (395.0362 without restraints) Performing minimization step: 4124. Total energy = 395.0047 kcal/mol (395.0005 without restraints) Performing minimization step: 4125. Total energy = 394.9690 kcal/mol (394.9648 without restraints) Performing minimization step: 4126. Total energy = 394.9333 kcal/mol (394.9291 without restraints) Performing minimization step: 4127. Total energy = 394.8976 kcal/mol (394.8934 without restraints) Performing minimization step: 4128. Total energy = 394.8620 kcal/mol (394.8578 without restraints) Performing minimization step: 4129. Total energy = 394.8262 kcal/mol (394.8219 without restraints) Performing minimization step: 4130. Total energy = 394.7905 kcal/mol (394.7863 without restraints) Performing minimization step: 4131. Total energy = 394.7547 kcal/mol (394.7505 without restraints) Performing minimization step: 4132. Total energy = 394.7188 kcal/mol (394.7146 without restraints) Performing minimization step: 4133. Total energy = 394.6832 kcal/mol (394.6790 without restraints) Performing minimization step: 4134. Total energy = 394.6477 kcal/mol (394.6435 without restraints) Performing minimization step: 4135. Total energy = 394.6121 kcal/mol (394.6079 without restraints) Performing minimization step: 4136. Total energy = 394.5765 kcal/mol (394.5723 without restraints) Performing minimization step: 4137. Total energy = 394.5410 kcal/mol (394.5368 without restraints) Performing minimization step: 4138. Total energy = 394.5054 kcal/mol (394.5012 without restraints) Performing minimization step: 4139. Total energy = 394.4699 kcal/mol (394.4657 without restraints) Performing minimization step: 4140. Total energy = 394.4339 kcal/mol (394.4298 without restraints) Performing minimization step: 4141. Total energy = 394.3985 kcal/mol (394.3943 without restraints) Performing minimization step: 4142. Total energy = 394.3630 kcal/mol (394.3588 without restraints) Performing minimization step: 4143. Total energy = 394.3277 kcal/mol (394.3235 without restraints) Performing minimization step: 4144. Total energy = 394.2923 kcal/mol (394.2881 without restraints) Performing minimization step: 4145. Total energy = 394.2568 kcal/mol (394.2526 without restraints) Performing minimization step: 4146. Total energy = 394.2214 kcal/mol (394.2173 without restraints) Performing minimization step: 4147. Total energy = 394.1860 kcal/mol (394.1818 without restraints) Performing minimization step: 4148. Total energy = 394.1506 kcal/mol (394.1464 without restraints) Performing minimization step: 4149. Total energy = 394.1152 kcal/mol (394.1110 without restraints) Performing minimization step: 4150. Total energy = 394.0798 kcal/mol (394.0756 without restraints) Performing minimization step: 4151. Total energy = 394.0444 kcal/mol (394.0402 without restraints) Performing minimization step: 4152. Total energy = 394.0091 kcal/mol (394.0049 without restraints) Performing minimization step: 4153. Total energy = 393.9737 kcal/mol (393.9696 without restraints) Performing minimization step: 4154. Total energy = 393.9384 kcal/mol (393.9343 without restraints) Performing minimization step: 4155. Total energy = 393.9031 kcal/mol (393.8990 without restraints) Performing minimization step: 4156. Total energy = 393.8678 kcal/mol (393.8637 without restraints) Performing minimization step: 4157. Total energy = 393.8326 kcal/mol (393.8284 without restraints) Performing minimization step: 4158. Total energy = 393.7973 kcal/mol (393.7931 without restraints) Performing minimization step: 4159. Total energy = 393.7621 kcal/mol (393.7579 without restraints) Performing minimization step: 4160. Total energy = 393.7268 kcal/mol (393.7227 without restraints) Performing minimization step: 4161. Total energy = 393.6916 kcal/mol (393.6874 without restraints) Performing minimization step: 4162. Total energy = 393.6564 kcal/mol (393.6522 without restraints) Performing minimization step: 4163. Total energy = 393.6212 kcal/mol (393.6170 without restraints) Performing minimization step: 4164. Total energy = 393.5860 kcal/mol (393.5819 without restraints) Performing minimization step: 4165. Total energy = 393.5509 kcal/mol (393.5467 without restraints) Performing minimization step: 4166. Total energy = 393.5157 kcal/mol (393.5116 without restraints) Performing minimization step: 4167. Total energy = 393.4806 kcal/mol (393.4764 without restraints) Performing minimization step: 4168. Total energy = 393.4455 kcal/mol (393.4413 without restraints) Performing minimization step: 4169. Total energy = 393.4103 kcal/mol (393.4062 without restraints) Performing minimization step: 4170. Total energy = 393.3752 kcal/mol (393.3711 without restraints) Performing minimization step: 4171. Total energy = 393.3401 kcal/mol (393.3360 without restraints) Performing minimization step: 4172. Total energy = 393.3051 kcal/mol (393.3009 without restraints) Performing minimization step: 4173. Total energy = 393.2698 kcal/mol (393.2657 without restraints) Performing minimization step: 4174. Total energy = 393.2347 kcal/mol (393.2306 without restraints) Performing minimization step: 4175. Total energy = 393.1997 kcal/mol (393.1956 without restraints) Performing minimization step: 4176. Total energy = 393.1647 kcal/mol (393.1605 without restraints) Performing minimization step: 4177. Total energy = 393.1296 kcal/mol (393.1255 without restraints) Performing minimization step: 4178. Total energy = 393.0946 kcal/mol (393.0905 without restraints) Performing minimization step: 4179. Total energy = 393.0596 kcal/mol (393.0555 without restraints) Performing minimization step: 4180. Total energy = 393.0247 kcal/mol (393.0205 without restraints) Performing minimization step: 4181. Total energy = 392.9897 kcal/mol (392.9856 without restraints) Performing minimization step: 4182. Total energy = 392.9548 kcal/mol (392.9507 without restraints) Performing minimization step: 4183. Total energy = 392.9199 kcal/mol (392.9157 without restraints) Performing minimization step: 4184. Total energy = 392.8849 kcal/mol (392.8808 without restraints) Performing minimization step: 4185. Total energy = 392.8500 kcal/mol (392.8459 without restraints) Performing minimization step: 4186. Total energy = 392.8151 kcal/mol (392.8110 without restraints) Performing minimization step: 4187. Total energy = 392.7803 kcal/mol (392.7761 without restraints) Performing minimization step: 4188. Total energy = 392.7456 kcal/mol (392.7415 without restraints) Performing minimization step: 4189. Total energy = 392.7108 kcal/mol (392.7066 without restraints) Performing minimization step: 4190. Total energy = 392.6759 kcal/mol (392.6718 without restraints) Performing minimization step: 4191. Total energy = 392.6413 kcal/mol (392.6372 without restraints) Performing minimization step: 4192. Total energy = 392.6065 kcal/mol (392.6024 without restraints) Performing minimization step: 4193. Total energy = 392.5717 kcal/mol (392.5676 without restraints) Performing minimization step: 4194. Total energy = 392.5369 kcal/mol (392.5328 without restraints) Performing minimization step: 4195. Total energy = 392.5021 kcal/mol (392.4980 without restraints) Performing minimization step: 4196. Total energy = 392.4674 kcal/mol (392.4633 without restraints) Performing minimization step: 4197. Total energy = 392.4326 kcal/mol (392.4285 without restraints) Performing minimization step: 4198. Total energy = 392.3978 kcal/mol (392.3938 without restraints) Performing minimization step: 4199. Total energy = 392.3631 kcal/mol (392.3590 without restraints) Performing minimization step: 4200. Total energy = 392.3284 kcal/mol (392.3243 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 392.2937 kcal/mol (392.2896 without restraints) Performing minimization step: 4202. Total energy = 392.2590 kcal/mol (392.2549 without restraints) Performing minimization step: 4203. Total energy = 392.2244 kcal/mol (392.2203 without restraints) Performing minimization step: 4204. Total energy = 392.1897 kcal/mol (392.1856 without restraints) Performing minimization step: 4205. Total energy = 392.1550 kcal/mol (392.1510 without restraints) Performing minimization step: 4206. Total energy = 392.1204 kcal/mol (392.1163 without restraints) Performing minimization step: 4207. Total energy = 392.0858 kcal/mol (392.0817 without restraints) Performing minimization step: 4208. Total energy = 392.0512 kcal/mol (392.0471 without restraints) Performing minimization step: 4209. Total energy = 392.0166 kcal/mol (392.0125 without restraints) Performing minimization step: 4210. Total energy = 391.9820 kcal/mol (391.9779 without restraints) Performing minimization step: 4211. Total energy = 391.9472 kcal/mol (391.9430 without restraints) Performing minimization step: 4212. Total energy = 391.9125 kcal/mol (391.9084 without restraints) Performing minimization step: 4213. Total energy = 391.8779 kcal/mol (391.8738 without restraints) Performing minimization step: 4214. Total energy = 391.8434 kcal/mol (391.8393 without restraints) Performing minimization step: 4215. Total energy = 391.8089 kcal/mol (391.8048 without restraints) Performing minimization step: 4216. Total energy = 391.7744 kcal/mol (391.7703 without restraints) Performing minimization step: 4217. Total energy = 391.7399 kcal/mol (391.7358 without restraints) Performing minimization step: 4218. Total energy = 391.7053 kcal/mol (391.7011 without restraints) Performing minimization step: 4219. Total energy = 391.6707 kcal/mol (391.6666 without restraints) Performing minimization step: 4220. Total energy = 391.6363 kcal/mol (391.6322 without restraints) Performing minimization step: 4221. Total energy = 391.6018 kcal/mol (391.5977 without restraints) Performing minimization step: 4222. Total energy = 391.5674 kcal/mol (391.5633 without restraints) Performing minimization step: 4223. Total energy = 391.5330 kcal/mol (391.5289 without restraints) Performing minimization step: 4224. Total energy = 391.4985 kcal/mol (391.4945 without restraints) Performing minimization step: 4225. Total energy = 391.4642 kcal/mol (391.4601 without restraints) Performing minimization step: 4226. Total energy = 391.4298 kcal/mol (391.4257 without restraints) Performing minimization step: 4227. Total energy = 391.3954 kcal/mol (391.3914 without restraints) Performing minimization step: 4228. Total energy = 391.3611 kcal/mol (391.3570 without restraints) Performing minimization step: 4229. Total energy = 391.3267 kcal/mol (391.3227 without restraints) Performing minimization step: 4230. Total energy = 391.2924 kcal/mol (391.2883 without restraints) Performing minimization step: 4231. Total energy = 391.2581 kcal/mol (391.2541 without restraints) Performing minimization step: 4232. Total energy = 391.2238 kcal/mol (391.2198 without restraints) Performing minimization step: 4233. Total energy = 391.1895 kcal/mol (391.1855 without restraints) Performing minimization step: 4234. Total energy = 391.1552 kcal/mol (391.1512 without restraints) Performing minimization step: 4235. Total energy = 391.1210 kcal/mol (391.1169 without restraints) Performing minimization step: 4236. Total energy = 391.0867 kcal/mol (391.0827 without restraints) Performing minimization step: 4237. Total energy = 391.0525 kcal/mol (391.0484 without restraints) Performing minimization step: 4238. Total energy = 391.0182 kcal/mol (391.0142 without restraints) Performing minimization step: 4239. Total energy = 390.9840 kcal/mol (390.9800 without restraints) Performing minimization step: 4240. Total energy = 390.9498 kcal/mol (390.9458 without restraints) Performing minimization step: 4241. Total energy = 390.9156 kcal/mol (390.9116 without restraints) Performing minimization step: 4242. Total energy = 390.8815 kcal/mol (390.8774 without restraints) Performing minimization step: 4243. Total energy = 390.8473 kcal/mol (390.8433 without restraints) Performing minimization step: 4244. Total energy = 390.8132 kcal/mol (390.8091 without restraints) Performing minimization step: 4245. Total energy = 390.7790 kcal/mol (390.7750 without restraints) Performing minimization step: 4246. Total energy = 390.7449 kcal/mol (390.7409 without restraints) Performing minimization step: 4247. Total energy = 390.7108 kcal/mol (390.7068 without restraints) Performing minimization step: 4248. Total energy = 390.6767 kcal/mol (390.6727 without restraints) Performing minimization step: 4249. Total energy = 390.6426 kcal/mol (390.6386 without restraints) Performing minimization step: 4250. Total energy = 390.6086 kcal/mol (390.6045 without restraints) Performing minimization step: 4251. Total energy = 390.5745 kcal/mol (390.5705 without restraints) Performing minimization step: 4252. Total energy = 390.5405 kcal/mol (390.5364 without restraints) Performing minimization step: 4253. Total energy = 390.5064 kcal/mol (390.5024 without restraints) Performing minimization step: 4254. Total energy = 390.4724 kcal/mol (390.4684 without restraints) Performing minimization step: 4255. Total energy = 390.4384 kcal/mol (390.4344 without restraints) Performing minimization step: 4256. Total energy = 390.4043 kcal/mol (390.4002 without restraints) Performing minimization step: 4257. Total energy = 390.3702 kcal/mol (390.3661 without restraints) Performing minimization step: 4258. Total energy = 390.3362 kcal/mol (390.3322 without restraints) Performing minimization step: 4259. Total energy = 390.3022 kcal/mol (390.2982 without restraints) Performing minimization step: 4260. Total energy = 390.2683 kcal/mol (390.2642 without restraints) Performing minimization step: 4261. Total energy = 390.2343 kcal/mol (390.2303 without restraints) Performing minimization step: 4262. Total energy = 390.2004 kcal/mol (390.1964 without restraints) Performing minimization step: 4263. Total energy = 390.1664 kcal/mol (390.1624 without restraints) Performing minimization step: 4264. Total energy = 390.1325 kcal/mol (390.1285 without restraints) Performing minimization step: 4265. Total energy = 390.0987 kcal/mol (390.0946 without restraints) Performing minimization step: 4266. Total energy = 390.0648 kcal/mol (390.0608 without restraints) Performing minimization step: 4267. Total energy = 390.0309 kcal/mol (390.0269 without restraints) Performing minimization step: 4268. Total energy = 389.9971 kcal/mol (389.9931 without restraints) Performing minimization step: 4269. Total energy = 389.9632 kcal/mol (389.9592 without restraints) Performing minimization step: 4270. Total energy = 389.9294 kcal/mol (389.9254 without restraints) Performing minimization step: 4271. Total energy = 389.8953 kcal/mol (389.8913 without restraints) Performing minimization step: 4272. Total energy = 389.8615 kcal/mol (389.8575 without restraints) Performing minimization step: 4273. Total energy = 389.8277 kcal/mol (389.8238 without restraints) Performing minimization step: 4274. Total energy = 389.7940 kcal/mol (389.7900 without restraints) Performing minimization step: 4275. Total energy = 389.7602 kcal/mol (389.7563 without restraints) Performing minimization step: 4276. Total energy = 389.7265 kcal/mol (389.7225 without restraints) Performing minimization step: 4277. Total energy = 389.6928 kcal/mol (389.6888 without restraints) Performing minimization step: 4278. Total energy = 389.6590 kcal/mol (389.6550 without restraints) Performing minimization step: 4279. Total energy = 389.6253 kcal/mol (389.6213 without restraints) Performing minimization step: 4280. Total energy = 389.5916 kcal/mol (389.5876 without restraints) Performing minimization step: 4281. Total energy = 389.5579 kcal/mol (389.5539 without restraints) Performing minimization step: 4282. Total energy = 389.5242 kcal/mol (389.5203 without restraints) Performing minimization step: 4283. Total energy = 389.4906 kcal/mol (389.4866 without restraints) Performing minimization step: 4284. Total energy = 389.4572 kcal/mol (389.4532 without restraints) Performing minimization step: 4285. Total energy = 389.4236 kcal/mol (389.4196 without restraints) Performing minimization step: 4286. Total energy = 389.3900 kcal/mol (389.3860 without restraints) Performing minimization step: 4287. Total energy = 389.3564 kcal/mol (389.3524 without restraints) Performing minimization step: 4288. Total energy = 389.3228 kcal/mol (389.3188 without restraints) Performing minimization step: 4289. Total energy = 389.2892 kcal/mol (389.2852 without restraints) Performing minimization step: 4290. Total energy = 389.2554 kcal/mol (389.2514 without restraints) Performing minimization step: 4291. Total energy = 389.2218 kcal/mol (389.2179 without restraints) Performing minimization step: 4292. Total energy = 389.1883 kcal/mol (389.1843 without restraints) Performing minimization step: 4293. Total energy = 389.1547 kcal/mol (389.1508 without restraints) Performing minimization step: 4294. Total energy = 389.1212 kcal/mol (389.1172 without restraints) Performing minimization step: 4295. Total energy = 389.0877 kcal/mol (389.0837 without restraints) Performing minimization step: 4296. Total energy = 389.0542 kcal/mol (389.0502 without restraints) Performing minimization step: 4297. Total energy = 389.0207 kcal/mol (389.0167 without restraints) Performing minimization step: 4298. Total energy = 388.9872 kcal/mol (388.9833 without restraints) Performing minimization step: 4299. Total energy = 388.9538 kcal/mol (388.9498 without restraints) Performing minimization step: 4300. Total energy = 388.9203 kcal/mol (388.9164 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 388.8869 kcal/mol (388.8829 without restraints) Performing minimization step: 4302. Total energy = 388.8534 kcal/mol (388.8495 without restraints) Performing minimization step: 4303. Total energy = 388.8200 kcal/mol (388.8161 without restraints) Performing minimization step: 4304. Total energy = 388.7866 kcal/mol (388.7827 without restraints) Performing minimization step: 4305. Total energy = 388.7532 kcal/mol (388.7493 without restraints) Performing minimization step: 4306. Total energy = 388.7198 kcal/mol (388.7159 without restraints) Performing minimization step: 4307. Total energy = 388.6865 kcal/mol (388.6825 without restraints) Performing minimization step: 4308. Total energy = 388.6531 kcal/mol (388.6492 without restraints) Performing minimization step: 4309. Total energy = 388.6198 kcal/mol (388.6159 without restraints) Performing minimization step: 4310. Total energy = 388.5863 kcal/mol (388.5822 without restraints) Performing minimization step: 4311. Total energy = 388.5528 kcal/mol (388.5489 without restraints) Performing minimization step: 4312. Total energy = 388.5195 kcal/mol (388.5156 without restraints) Performing minimization step: 4313. Total energy = 388.4862 kcal/mol (388.4823 without restraints) Performing minimization step: 4314. Total energy = 388.4529 kcal/mol (388.4490 without restraints) Performing minimization step: 4315. Total energy = 388.4196 kcal/mol (388.4157 without restraints) Performing minimization step: 4316. Total energy = 388.3864 kcal/mol (388.3825 without restraints) Performing minimization step: 4317. Total energy = 388.3531 kcal/mol (388.3492 without restraints) Performing minimization step: 4318. Total energy = 388.3199 kcal/mol (388.3160 without restraints) Performing minimization step: 4319. Total energy = 388.2869 kcal/mol (388.2830 without restraints) Performing minimization step: 4320. Total energy = 388.2537 kcal/mol (388.2498 without restraints) Performing minimization step: 4321. Total energy = 388.2205 kcal/mol (388.2166 without restraints) Performing minimization step: 4322. Total energy = 388.1873 kcal/mol (388.1834 without restraints) Performing minimization step: 4323. Total energy = 388.1542 kcal/mol (388.1503 without restraints) Performing minimization step: 4324. Total energy = 388.1210 kcal/mol (388.1171 without restraints) Performing minimization step: 4325. Total energy = 388.0878 kcal/mol (388.0839 without restraints) Performing minimization step: 4326. Total energy = 388.0546 kcal/mol (388.0507 without restraints) Performing minimization step: 4327. Total energy = 388.0215 kcal/mol (388.0176 without restraints) Performing minimization step: 4328. Total energy = 387.9884 kcal/mol (387.9845 without restraints) Performing minimization step: 4329. Total energy = 387.9553 kcal/mol (387.9514 without restraints) Performing minimization step: 4330. Total energy = 387.9222 kcal/mol (387.9183 without restraints) Performing minimization step: 4331. Total energy = 387.8891 kcal/mol (387.8852 without restraints) Performing minimization step: 4332. Total energy = 387.8558 kcal/mol (387.8519 without restraints) Performing minimization step: 4333. Total energy = 387.8228 kcal/mol (387.8189 without restraints) Performing minimization step: 4334. Total energy = 387.7897 kcal/mol (387.7858 without restraints) Performing minimization step: 4335. Total energy = 387.7567 kcal/mol (387.7528 without restraints) Performing minimization step: 4336. Total energy = 387.7237 kcal/mol (387.7198 without restraints) Performing minimization step: 4337. Total energy = 387.6907 kcal/mol (387.6868 without restraints) Performing minimization step: 4338. Total energy = 387.6577 kcal/mol (387.6538 without restraints) Performing minimization step: 4339. Total energy = 387.6247 kcal/mol (387.6208 without restraints) Performing minimization step: 4340. Total energy = 387.5917 kcal/mol (387.5879 without restraints) Performing minimization step: 4341. Total energy = 387.5587 kcal/mol (387.5547 without restraints) Performing minimization step: 4342. Total energy = 387.5257 kcal/mol (387.5218 without restraints) Performing minimization step: 4343. Total energy = 387.4927 kcal/mol (387.4888 without restraints) Performing minimization step: 4344. Total energy = 387.4598 kcal/mol (387.4559 without restraints) Performing minimization step: 4345. Total energy = 387.4269 kcal/mol (387.4230 without restraints) Performing minimization step: 4346. Total energy = 387.3940 kcal/mol (387.3901 without restraints) Performing minimization step: 4347. Total energy = 387.3611 kcal/mol (387.3572 without restraints) Performing minimization step: 4348. Total energy = 387.3282 kcal/mol (387.3243 without restraints) Performing minimization step: 4349. Total energy = 387.2954 kcal/mol (387.2915 without restraints) Performing minimization step: 4350. Total energy = 387.2625 kcal/mol (387.2586 without restraints) Performing minimization step: 4351. Total energy = 387.2297 kcal/mol (387.2258 without restraints) Performing minimization step: 4352. Total energy = 387.1969 kcal/mol (387.1930 without restraints) Performing minimization step: 4353. Total energy = 387.1640 kcal/mol (387.1602 without restraints) Performing minimization step: 4354. Total energy = 387.1312 kcal/mol (387.1274 without restraints) Performing minimization step: 4355. Total energy = 387.0985 kcal/mol (387.0946 without restraints) Performing minimization step: 4356. Total energy = 387.0657 kcal/mol (387.0618 without restraints) Performing minimization step: 4357. Total energy = 387.0329 kcal/mol (387.0291 without restraints) Performing minimization step: 4358. Total energy = 387.0002 kcal/mol (386.9963 without restraints) Performing minimization step: 4359. Total energy = 386.9674 kcal/mol (386.9636 without restraints) Performing minimization step: 4360. Total energy = 386.9347 kcal/mol (386.9308 without restraints) Performing minimization step: 4361. Total energy = 386.9020 kcal/mol (386.8981 without restraints) Performing minimization step: 4362. Total energy = 386.8693 kcal/mol (386.8654 without restraints) Performing minimization step: 4363. Total energy = 386.8366 kcal/mol (386.8327 without restraints) Performing minimization step: 4364. Total energy = 386.8039 kcal/mol (386.8001 without restraints) Performing minimization step: 4365. Total energy = 386.7713 kcal/mol (386.7674 without restraints) Performing minimization step: 4366. Total energy = 386.7386 kcal/mol (386.7347 without restraints) Performing minimization step: 4367. Total energy = 386.7060 kcal/mol (386.7021 without restraints) Performing minimization step: 4368. Total energy = 386.6733 kcal/mol (386.6695 without restraints) Performing minimization step: 4369. Total energy = 386.6407 kcal/mol (386.6369 without restraints) Performing minimization step: 4370. Total energy = 386.6082 kcal/mol (386.6045 without restraints) Performing minimization step: 4371. Total energy = 386.5757 kcal/mol (386.5719 without restraints) Performing minimization step: 4372. Total energy = 386.5431 kcal/mol (386.5393 without restraints) Performing minimization step: 4373. Total energy = 386.5106 kcal/mol (386.5068 without restraints) Performing minimization step: 4374. Total energy = 386.4780 kcal/mol (386.4742 without restraints) Performing minimization step: 4375. Total energy = 386.4455 kcal/mol (386.4416 without restraints) Performing minimization step: 4376. Total energy = 386.4130 kcal/mol (386.4091 without restraints) Performing minimization step: 4377. Total energy = 386.3802 kcal/mol (386.3764 without restraints) Performing minimization step: 4378. Total energy = 386.3477 kcal/mol (386.3439 without restraints) Performing minimization step: 4379. Total energy = 386.3152 kcal/mol (386.3114 without restraints) Performing minimization step: 4380. Total energy = 386.2827 kcal/mol (386.2789 without restraints) Performing minimization step: 4381. Total energy = 386.2502 kcal/mol (386.2464 without restraints) Performing minimization step: 4382. Total energy = 386.2178 kcal/mol (386.2139 without restraints) Performing minimization step: 4383. Total energy = 386.1853 kcal/mol (386.1815 without restraints) Performing minimization step: 4384. Total energy = 386.1529 kcal/mol (386.1490 without restraints) Performing minimization step: 4385. Total energy = 386.1202 kcal/mol (386.1164 without restraints) Performing minimization step: 4386. Total energy = 386.0878 kcal/mol (386.0840 without restraints) Performing minimization step: 4387. Total energy = 386.0554 kcal/mol (386.0515 without restraints) Performing minimization step: 4388. Total energy = 386.0230 kcal/mol (386.0192 without restraints) Performing minimization step: 4389. Total energy = 385.9906 kcal/mol (385.9868 without restraints) Performing minimization step: 4390. Total energy = 385.9582 kcal/mol (385.9544 without restraints) Performing minimization step: 4391. Total energy = 385.9259 kcal/mol (385.9220 without restraints) Performing minimization step: 4392. Total energy = 385.8934 kcal/mol (385.8895 without restraints) Performing minimization step: 4393. Total energy = 385.8610 kcal/mol (385.8572 without restraints) Performing minimization step: 4394. Total energy = 385.8287 kcal/mol (385.8248 without restraints) Performing minimization step: 4395. Total energy = 385.7963 kcal/mol (385.7925 without restraints) Performing minimization step: 4396. Total energy = 385.7640 kcal/mol (385.7602 without restraints) Performing minimization step: 4397. Total energy = 385.7318 kcal/mol (385.7280 without restraints) Performing minimization step: 4398. Total energy = 385.6995 kcal/mol (385.6957 without restraints) Performing minimization step: 4399. Total energy = 385.6672 kcal/mol (385.6634 without restraints) Performing minimization step: 4400. Total energy = 385.6351 kcal/mol (385.6313 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 385.6029 kcal/mol (385.5991 without restraints) Performing minimization step: 4402. Total energy = 385.5706 kcal/mol (385.5668 without restraints) Performing minimization step: 4403. Total energy = 385.5384 kcal/mol (385.5346 without restraints) Performing minimization step: 4404. Total energy = 385.5062 kcal/mol (385.5024 without restraints) Performing minimization step: 4405. Total energy = 385.4740 kcal/mol (385.4702 without restraints) Performing minimization step: 4406. Total energy = 385.4419 kcal/mol (385.4381 without restraints) Performing minimization step: 4407. Total energy = 385.4097 kcal/mol (385.4059 without restraints) Performing minimization step: 4408. Total energy = 385.3775 kcal/mol (385.3738 without restraints) Performing minimization step: 4409. Total energy = 385.3454 kcal/mol (385.3416 without restraints) Performing minimization step: 4410. Total energy = 385.3133 kcal/mol (385.3095 without restraints) Performing minimization step: 4411. Total energy = 385.2811 kcal/mol (385.2773 without restraints) Performing minimization step: 4412. Total energy = 385.2490 kcal/mol (385.2452 without restraints) Performing minimization step: 4413. Total energy = 385.2169 kcal/mol (385.2131 without restraints) Performing minimization step: 4414. Total energy = 385.1848 kcal/mol (385.1810 without restraints) Performing minimization step: 4415. Total energy = 385.1528 kcal/mol (385.1490 without restraints) Performing minimization step: 4416. Total energy = 385.1207 kcal/mol (385.1169 without restraints) Performing minimization step: 4417. Total energy = 385.0886 kcal/mol (385.0849 without restraints) Performing minimization step: 4418. Total energy = 385.0566 kcal/mol (385.0529 without restraints) Performing minimization step: 4419. Total energy = 385.0246 kcal/mol (385.0208 without restraints) Performing minimization step: 4420. Total energy = 384.9926 kcal/mol (384.9888 without restraints) Performing minimization step: 4421. Total energy = 384.9606 kcal/mol (384.9568 without restraints) Performing minimization step: 4422. Total energy = 384.9286 kcal/mol (384.9248 without restraints) Performing minimization step: 4423. Total energy = 384.8966 kcal/mol (384.8928 without restraints) Performing minimization step: 4424. Total energy = 384.8646 kcal/mol (384.8608 without restraints) Performing minimization step: 4425. Total energy = 384.8327 kcal/mol (384.8289 without restraints) Performing minimization step: 4426. Total energy = 384.8007 kcal/mol (384.7969 without restraints) Performing minimization step: 4427. Total energy = 384.7688 kcal/mol (384.7650 without restraints) Performing minimization step: 4428. Total energy = 384.7368 kcal/mol (384.7331 without restraints) Performing minimization step: 4429. Total energy = 384.7049 kcal/mol (384.7012 without restraints) Performing minimization step: 4430. Total energy = 384.6730 kcal/mol (384.6693 without restraints) Performing minimization step: 4431. Total energy = 384.6411 kcal/mol (384.6374 without restraints) Performing minimization step: 4432. Total energy = 384.6097 kcal/mol (384.6059 without restraints) Performing minimization step: 4433. Total energy = 384.5778 kcal/mol (384.5741 without restraints) Performing minimization step: 4434. Total energy = 384.5457 kcal/mol (384.5420 without restraints) Performing minimization step: 4435. Total energy = 384.5139 kcal/mol (384.5101 without restraints) Performing minimization step: 4436. Total energy = 384.4821 kcal/mol (384.4783 without restraints) Performing minimization step: 4437. Total energy = 384.4502 kcal/mol (384.4465 without restraints) Performing minimization step: 4438. Total energy = 384.4184 kcal/mol (384.4147 without restraints) Performing minimization step: 4439. Total energy = 384.3866 kcal/mol (384.3829 without restraints) Performing minimization step: 4440. Total energy = 384.3548 kcal/mol (384.3511 without restraints) Performing minimization step: 4441. Total energy = 384.3231 kcal/mol (384.3193 without restraints) Performing minimization step: 4442. Total energy = 384.2913 kcal/mol (384.2875 without restraints) Performing minimization step: 4443. Total energy = 384.2595 kcal/mol (384.2558 without restraints) Performing minimization step: 4444. Total energy = 384.2278 kcal/mol (384.2240 without restraints) Performing minimization step: 4445. Total energy = 384.1961 kcal/mol (384.1923 without restraints) Performing minimization step: 4446. Total energy = 384.1645 kcal/mol (384.1608 without restraints) Performing minimization step: 4447. Total energy = 384.1329 kcal/mol (384.1291 without restraints) Performing minimization step: 4448. Total energy = 384.1012 kcal/mol (384.0974 without restraints) Performing minimization step: 4449. Total energy = 384.0697 kcal/mol (384.0659 without restraints) Performing minimization step: 4450. Total energy = 384.0380 kcal/mol (384.0342 without restraints) Performing minimization step: 4451. Total energy = 384.0064 kcal/mol (384.0027 without restraints) Performing minimization step: 4452. Total energy = 383.9747 kcal/mol (383.9710 without restraints) Performing minimization step: 4453. Total energy = 383.9431 kcal/mol (383.9394 without restraints) Performing minimization step: 4454. Total energy = 383.9113 kcal/mol (383.9076 without restraints) Performing minimization step: 4455. Total energy = 383.8797 kcal/mol (383.8759 without restraints) Performing minimization step: 4456. Total energy = 383.8481 kcal/mol (383.8443 without restraints) Performing minimization step: 4457. Total energy = 383.8165 kcal/mol (383.8128 without restraints) Performing minimization step: 4458. Total energy = 383.7849 kcal/mol (383.7812 without restraints) Performing minimization step: 4459. Total energy = 383.7533 kcal/mol (383.7496 without restraints) Performing minimization step: 4460. Total energy = 383.7218 kcal/mol (383.7180 without restraints) Performing minimization step: 4461. Total energy = 383.6902 kcal/mol (383.6865 without restraints) Performing minimization step: 4462. Total energy = 383.6587 kcal/mol (383.6550 without restraints) Performing minimization step: 4463. Total energy = 383.6272 kcal/mol (383.6234 without restraints) Performing minimization step: 4464. Total energy = 383.5956 kcal/mol (383.5919 without restraints) Performing minimization step: 4465. Total energy = 383.5641 kcal/mol (383.5604 without restraints) Performing minimization step: 4466. Total energy = 383.5326 kcal/mol (383.5289 without restraints) Performing minimization step: 4467. Total energy = 383.5012 kcal/mol (383.4975 without restraints) Performing minimization step: 4468. Total energy = 383.4697 kcal/mol (383.4660 without restraints) Performing minimization step: 4469. Total energy = 383.4382 kcal/mol (383.4345 without restraints) Performing minimization step: 4470. Total energy = 383.4068 kcal/mol (383.4031 without restraints) Performing minimization step: 4471. Total energy = 383.3754 kcal/mol (383.3716 without restraints) Performing minimization step: 4472. Total energy = 383.3439 kcal/mol (383.3402 without restraints) Performing minimization step: 4473. Total energy = 383.3125 kcal/mol (383.3088 without restraints) Performing minimization step: 4474. Total energy = 383.2811 kcal/mol (383.2774 without restraints) Performing minimization step: 4475. Total energy = 383.2497 kcal/mol (383.2460 without restraints) Performing minimization step: 4476. Total energy = 383.2183 kcal/mol (383.2146 without restraints) Performing minimization step: 4477. Total energy = 383.1868 kcal/mol (383.1830 without restraints) Performing minimization step: 4478. Total energy = 383.1554 kcal/mol (383.1517 without restraints) Performing minimization step: 4479. Total energy = 383.1240 kcal/mol (383.1203 without restraints) Performing minimization step: 4480. Total energy = 383.0927 kcal/mol (383.0890 without restraints) Performing minimization step: 4481. Total energy = 383.0616 kcal/mol (383.0579 without restraints) Performing minimization step: 4482. Total energy = 383.0302 kcal/mol (383.0265 without restraints) Performing minimization step: 4483. Total energy = 382.9989 kcal/mol (382.9952 without restraints) Performing minimization step: 4484. Total energy = 382.9676 kcal/mol (382.9639 without restraints) Performing minimization step: 4485. Total energy = 382.9363 kcal/mol (382.9327 without restraints) Performing minimization step: 4486. Total energy = 382.9051 kcal/mol (382.9014 without restraints) Performing minimization step: 4487. Total energy = 382.8738 kcal/mol (382.8701 without restraints) Performing minimization step: 4488. Total energy = 382.8427 kcal/mol (382.8391 without restraints) Performing minimization step: 4489. Total energy = 382.8116 kcal/mol (382.8079 without restraints) Performing minimization step: 4490. Total energy = 382.7804 kcal/mol (382.7767 without restraints) Performing minimization step: 4491. Total energy = 382.7492 kcal/mol (382.7455 without restraints) Performing minimization step: 4492. Total energy = 382.7180 kcal/mol (382.7143 without restraints) Performing minimization step: 4493. Total energy = 382.6868 kcal/mol (382.6831 without restraints) Performing minimization step: 4494. Total energy = 382.6557 kcal/mol (382.6520 without restraints) Performing minimization step: 4495. Total energy = 382.6245 kcal/mol (382.6208 without restraints) Performing minimization step: 4496. Total energy = 382.5933 kcal/mol (382.5897 without restraints) Performing minimization step: 4497. Total energy = 382.5622 kcal/mol (382.5585 without restraints) Performing minimization step: 4498. Total energy = 382.5311 kcal/mol (382.5274 without restraints) Performing minimization step: 4499. Total energy = 382.4999 kcal/mol (382.4963 without restraints) Performing minimization step: 4500. Total energy = 382.4688 kcal/mol (382.4652 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 382.4377 kcal/mol (382.4341 without restraints) Performing minimization step: 4502. Total energy = 382.4067 kcal/mol (382.4030 without restraints) Performing minimization step: 4503. Total energy = 382.3756 kcal/mol (382.3719 without restraints) Performing minimization step: 4504. Total energy = 382.3445 kcal/mol (382.3409 without restraints) Performing minimization step: 4505. Total energy = 382.3135 kcal/mol (382.3098 without restraints) Performing minimization step: 4506. Total energy = 382.2824 kcal/mol (382.2788 without restraints) Performing minimization step: 4507. Total energy = 382.2514 kcal/mol (382.2477 without restraints) Performing minimization step: 4508. Total energy = 382.2204 kcal/mol (382.2167 without restraints) Performing minimization step: 4509. Total energy = 382.1894 kcal/mol (382.1858 without restraints) Performing minimization step: 4510. Total energy = 382.1584 kcal/mol (382.1548 without restraints) Performing minimization step: 4511. Total energy = 382.1274 kcal/mol (382.1238 without restraints) Performing minimization step: 4512. Total energy = 382.0965 kcal/mol (382.0928 without restraints) Performing minimization step: 4513. Total energy = 382.0655 kcal/mol (382.0618 without restraints) Performing minimization step: 4514. Total energy = 382.0346 kcal/mol (382.0309 without restraints) Performing minimization step: 4515. Total energy = 382.0036 kcal/mol (381.9998 without restraints) Performing minimization step: 4516. Total energy = 381.9726 kcal/mol (381.9689 without restraints) Performing minimization step: 4517. Total energy = 381.9416 kcal/mol (381.9380 without restraints) Performing minimization step: 4518. Total energy = 381.9107 kcal/mol (381.9071 without restraints) Performing minimization step: 4519. Total energy = 381.8798 kcal/mol (381.8762 without restraints) Performing minimization step: 4520. Total energy = 381.8490 kcal/mol (381.8453 without restraints) Performing minimization step: 4521. Total energy = 381.8181 kcal/mol (381.8144 without restraints) Performing minimization step: 4522. Total energy = 381.7872 kcal/mol (381.7836 without restraints) Performing minimization step: 4523. Total energy = 381.7564 kcal/mol (381.7527 without restraints) Performing minimization step: 4524. Total energy = 381.7255 kcal/mol (381.7219 without restraints) Performing minimization step: 4525. Total energy = 381.6947 kcal/mol (381.6911 without restraints) Performing minimization step: 4526. Total energy = 381.6639 kcal/mol (381.6602 without restraints) Performing minimization step: 4527. Total energy = 381.6331 kcal/mol (381.6294 without restraints) Performing minimization step: 4528. Total energy = 381.6023 kcal/mol (381.5986 without restraints) Performing minimization step: 4529. Total energy = 381.5715 kcal/mol (381.5679 without restraints) Performing minimization step: 4530. Total energy = 381.5407 kcal/mol (381.5371 without restraints) Performing minimization step: 4531. Total energy = 381.5100 kcal/mol (381.5063 without restraints) Performing minimization step: 4532. Total energy = 381.4792 kcal/mol (381.4756 without restraints) Performing minimization step: 4533. Total energy = 381.4485 kcal/mol (381.4448 without restraints) Performing minimization step: 4534. Total energy = 381.4177 kcal/mol (381.4141 without restraints) Performing minimization step: 4535. Total energy = 381.3870 kcal/mol (381.3834 without restraints) Performing minimization step: 4536. Total energy = 381.3563 kcal/mol (381.3527 without restraints) Performing minimization step: 4537. Total energy = 381.3256 kcal/mol (381.3220 without restraints) Performing minimization step: 4538. Total energy = 381.2949 kcal/mol (381.2913 without restraints) Performing minimization step: 4539. Total energy = 381.2642 kcal/mol (381.2606 without restraints) Performing minimization step: 4540. Total energy = 381.2333 kcal/mol (381.2297 without restraints) Performing minimization step: 4541. Total energy = 381.2027 kcal/mol (381.1990 without restraints) Performing minimization step: 4542. Total energy = 381.1720 kcal/mol (381.1684 without restraints) Performing minimization step: 4543. Total energy = 381.1413 kcal/mol (381.1377 without restraints) Performing minimization step: 4544. Total energy = 381.1108 kcal/mol (381.1073 without restraints) Performing minimization step: 4545. Total energy = 381.0803 kcal/mol (381.0767 without restraints) Performing minimization step: 4546. Total energy = 381.0497 kcal/mol (381.0461 without restraints) Performing minimization step: 4547. Total energy = 381.0191 kcal/mol (381.0155 without restraints) Performing minimization step: 4548. Total energy = 380.9886 kcal/mol (380.9849 without restraints) Performing minimization step: 4549. Total energy = 380.9580 kcal/mol (380.9544 without restraints) Performing minimization step: 4550. Total energy = 380.9274 kcal/mol (380.9238 without restraints) Performing minimization step: 4551. Total energy = 380.8969 kcal/mol (380.8933 without restraints) Performing minimization step: 4552. Total energy = 380.8663 kcal/mol (380.8627 without restraints) Performing minimization step: 4553. Total energy = 380.8358 kcal/mol (380.8322 without restraints) Performing minimization step: 4554. Total energy = 380.8053 kcal/mol (380.8017 without restraints) Performing minimization step: 4555. Total energy = 380.7748 kcal/mol (380.7712 without restraints) Performing minimization step: 4556. Total energy = 380.7443 kcal/mol (380.7407 without restraints) Performing minimization step: 4557. Total energy = 380.7138 kcal/mol (380.7102 without restraints) Performing minimization step: 4558. Total energy = 380.6834 kcal/mol (380.6798 without restraints) Performing minimization step: 4559. Total energy = 380.6529 kcal/mol (380.6493 without restraints) Performing minimization step: 4560. Total energy = 380.6225 kcal/mol (380.6189 without restraints) Performing minimization step: 4561. Total energy = 380.5920 kcal/mol (380.5885 without restraints) Performing minimization step: 4562. Total energy = 380.5616 kcal/mol (380.5580 without restraints) Performing minimization step: 4563. Total energy = 380.5312 kcal/mol (380.5276 without restraints) Performing minimization step: 4564. Total energy = 380.5008 kcal/mol (380.4972 without restraints) Performing minimization step: 4565. Total energy = 380.4704 kcal/mol (380.4668 without restraints) Performing minimization step: 4566. Total energy = 380.4401 kcal/mol (380.4365 without restraints) Performing minimization step: 4567. Total energy = 380.4097 kcal/mol (380.4061 without restraints) Performing minimization step: 4568. Total energy = 380.3793 kcal/mol (380.3758 without restraints) Performing minimization step: 4569. Total energy = 380.3490 kcal/mol (380.3454 without restraints) Performing minimization step: 4570. Total energy = 380.3187 kcal/mol (380.3151 without restraints) Performing minimization step: 4571. Total energy = 380.2884 kcal/mol (380.2848 without restraints) Performing minimization step: 4572. Total energy = 380.2581 kcal/mol (380.2545 without restraints) Performing minimization step: 4573. Total energy = 380.2277 kcal/mol (380.2241 without restraints) Performing minimization step: 4574. Total energy = 380.1974 kcal/mol (380.1939 without restraints) Performing minimization step: 4575. Total energy = 380.1672 kcal/mol (380.1636 without restraints) Performing minimization step: 4576. Total energy = 380.1369 kcal/mol (380.1334 without restraints) Performing minimization step: 4577. Total energy = 380.1067 kcal/mol (380.1031 without restraints) Performing minimization step: 4578. Total energy = 380.0764 kcal/mol (380.0728 without restraints) Performing minimization step: 4579. Total energy = 380.0462 kcal/mol (380.0426 without restraints) Performing minimization step: 4580. Total energy = 380.0159 kcal/mol (380.0124 without restraints) Performing minimization step: 4581. Total energy = 379.9857 kcal/mol (379.9822 without restraints) Performing minimization step: 4582. Total energy = 379.9555 kcal/mol (379.9520 without restraints) Performing minimization step: 4583. Total energy = 379.9253 kcal/mol (379.9218 without restraints) Performing minimization step: 4584. Total energy = 379.8951 kcal/mol (379.8916 without restraints) Performing minimization step: 4585. Total energy = 379.8650 kcal/mol (379.8614 without restraints) Performing minimization step: 4586. Total energy = 379.8348 kcal/mol (379.8313 without restraints) Performing minimization step: 4587. Total energy = 379.8047 kcal/mol (379.8011 without restraints) Performing minimization step: 4588. Total energy = 379.7745 kcal/mol (379.7710 without restraints) Performing minimization step: 4589. Total energy = 379.7444 kcal/mol (379.7409 without restraints) Performing minimization step: 4590. Total energy = 379.7141 kcal/mol (379.7105 without restraints) Performing minimization step: 4591. Total energy = 379.6840 kcal/mol (379.6804 without restraints) Performing minimization step: 4592. Total energy = 379.6539 kcal/mol (379.6503 without restraints) Performing minimization step: 4593. Total energy = 379.6238 kcal/mol (379.6202 without restraints) Performing minimization step: 4594. Total energy = 379.5937 kcal/mol (379.5901 without restraints) Performing minimization step: 4595. Total energy = 379.5636 kcal/mol (379.5601 without restraints) Performing minimization step: 4596. Total energy = 379.5336 kcal/mol (379.5300 without restraints) Performing minimization step: 4597. Total energy = 379.5035 kcal/mol (379.5000 without restraints) Performing minimization step: 4598. Total energy = 379.4735 kcal/mol (379.4699 without restraints) Performing minimization step: 4599. Total energy = 379.4435 kcal/mol (379.4399 without restraints) Performing minimization step: 4600. Total energy = 379.4135 kcal/mol (379.4100 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 379.3835 kcal/mol (379.3800 without restraints) Performing minimization step: 4602. Total energy = 379.3535 kcal/mol (379.3500 without restraints) Performing minimization step: 4603. Total energy = 379.3236 kcal/mol (379.3200 without restraints) Performing minimization step: 4604. Total energy = 379.2936 kcal/mol (379.2900 without restraints) Performing minimization step: 4605. Total energy = 379.2636 kcal/mol (379.2601 without restraints) Performing minimization step: 4606. Total energy = 379.2337 kcal/mol (379.2302 without restraints) Performing minimization step: 4607. Total energy = 379.2036 kcal/mol (379.2000 without restraints) Performing minimization step: 4608. Total energy = 379.1736 kcal/mol (379.1701 without restraints) Performing minimization step: 4609. Total energy = 379.1437 kcal/mol (379.1402 without restraints) Performing minimization step: 4610. Total energy = 379.1138 kcal/mol (379.1103 without restraints) Performing minimization step: 4611. Total energy = 379.0840 kcal/mol (379.0804 without restraints) Performing minimization step: 4612. Total energy = 379.0541 kcal/mol (379.0506 without restraints) Performing minimization step: 4613. Total energy = 379.0242 kcal/mol (379.0207 without restraints) Performing minimization step: 4614. Total energy = 378.9944 kcal/mol (378.9908 without restraints) Performing minimization step: 4615. Total energy = 378.9645 kcal/mol (378.9610 without restraints) Performing minimization step: 4616. Total energy = 378.9347 kcal/mol (378.9312 without restraints) Performing minimization step: 4617. Total energy = 378.9049 kcal/mol (378.9013 without restraints) Performing minimization step: 4618. Total energy = 378.8750 kcal/mol (378.8715 without restraints) Performing minimization step: 4619. Total energy = 378.8452 kcal/mol (378.8417 without restraints) Performing minimization step: 4620. Total energy = 378.8155 kcal/mol (378.8120 without restraints) Performing minimization step: 4621. Total energy = 378.7858 kcal/mol (378.7822 without restraints) Performing minimization step: 4622. Total energy = 378.7560 kcal/mol (378.7525 without restraints) Performing minimization step: 4623. Total energy = 378.7262 kcal/mol (378.7227 without restraints) Performing minimization step: 4624. Total energy = 378.6965 kcal/mol (378.6930 without restraints) Performing minimization step: 4625. Total energy = 378.6667 kcal/mol (378.6632 without restraints) Performing minimization step: 4626. Total energy = 378.6370 kcal/mol (378.6335 without restraints) Performing minimization step: 4627. Total energy = 378.6073 kcal/mol (378.6038 without restraints) Performing minimization step: 4628. Total energy = 378.5776 kcal/mol (378.5741 without restraints) Performing minimization step: 4629. Total energy = 378.5481 kcal/mol (378.5446 without restraints) Performing minimization step: 4630. Total energy = 378.5184 kcal/mol (378.5149 without restraints) Performing minimization step: 4631. Total energy = 378.4887 kcal/mol (378.4852 without restraints) Performing minimization step: 4632. Total energy = 378.4591 kcal/mol (378.4556 without restraints) Performing minimization step: 4633. Total energy = 378.4294 kcal/mol (378.4259 without restraints) Performing minimization step: 4634. Total energy = 378.3998 kcal/mol (378.3963 without restraints) Performing minimization step: 4635. Total energy = 378.3701 kcal/mol (378.3666 without restraints) Performing minimization step: 4636. Total energy = 378.3405 kcal/mol (378.3370 without restraints) Performing minimization step: 4637. Total energy = 378.3111 kcal/mol (378.3076 without restraints) Performing minimization step: 4638. Total energy = 378.2815 kcal/mol (378.2780 without restraints) Performing minimization step: 4639. Total energy = 378.2519 kcal/mol (378.2484 without restraints) Performing minimization step: 4640. Total energy = 378.2223 kcal/mol (378.2188 without restraints) Performing minimization step: 4641. Total energy = 378.1927 kcal/mol (378.1893 without restraints) Performing minimization step: 4642. Total energy = 378.1632 kcal/mol (378.1597 without restraints) Performing minimization step: 4643. Total energy = 378.1336 kcal/mol (378.1302 without restraints) Performing minimization step: 4644. Total energy = 378.1041 kcal/mol (378.1006 without restraints) Performing minimization step: 4645. Total energy = 378.0746 kcal/mol (378.0711 without restraints) Performing minimization step: 4646. Total energy = 378.0451 kcal/mol (378.0416 without restraints) Performing minimization step: 4647. Total energy = 378.0156 kcal/mol (378.0121 without restraints) Performing minimization step: 4648. Total energy = 377.9861 kcal/mol (377.9826 without restraints) Performing minimization step: 4649. Total energy = 377.9564 kcal/mol (377.9529 without restraints) Performing minimization step: 4650. Total energy = 377.9269 kcal/mol (377.9234 without restraints) Performing minimization step: 4651. Total energy = 377.8974 kcal/mol (377.8940 without restraints) Performing minimization step: 4652. Total energy = 377.8680 kcal/mol (377.8645 without restraints) Performing minimization step: 4653. Total energy = 377.8385 kcal/mol (377.8351 without restraints) Performing minimization step: 4654. Total energy = 377.8091 kcal/mol (377.8056 without restraints) Performing minimization step: 4655. Total energy = 377.7797 kcal/mol (377.7762 without restraints) Performing minimization step: 4656. Total energy = 377.7503 kcal/mol (377.7468 without restraints) Performing minimization step: 4657. Total energy = 377.7209 kcal/mol (377.7174 without restraints) Performing minimization step: 4658. Total energy = 377.6915 kcal/mol (377.6881 without restraints) Performing minimization step: 4659. Total energy = 377.6622 kcal/mol (377.6587 without restraints) Performing minimization step: 4660. Total energy = 377.6328 kcal/mol (377.6293 without restraints) Performing minimization step: 4661. Total energy = 377.6034 kcal/mol (377.6000 without restraints) Performing minimization step: 4662. Total energy = 377.5741 kcal/mol (377.5706 without restraints) Performing minimization step: 4663. Total energy = 377.5448 kcal/mol (377.5413 without restraints) Performing minimization step: 4664. Total energy = 377.5153 kcal/mol (377.5118 without restraints) Performing minimization step: 4665. Total energy = 377.4858 kcal/mol (377.4823 without restraints) Performing minimization step: 4666. Total energy = 377.4565 kcal/mol (377.4530 without restraints) Performing minimization step: 4667. Total energy = 377.4272 kcal/mol (377.4237 without restraints) Performing minimization step: 4668. Total energy = 377.3979 kcal/mol (377.3944 without restraints) Performing minimization step: 4669. Total energy = 377.3686 kcal/mol (377.3652 without restraints) Performing minimization step: 4670. Total energy = 377.3394 kcal/mol (377.3360 without restraints) Performing minimization step: 4671. Total energy = 377.3102 kcal/mol (377.3067 without restraints) Performing minimization step: 4672. Total energy = 377.2809 kcal/mol (377.2775 without restraints) Performing minimization step: 4673. Total energy = 377.2517 kcal/mol (377.2483 without restraints) Performing minimization step: 4674. Total energy = 377.2225 kcal/mol (377.2191 without restraints) Performing minimization step: 4675. Total energy = 377.1933 kcal/mol (377.1899 without restraints) Performing minimization step: 4676. Total energy = 377.1641 kcal/mol (377.1607 without restraints) Performing minimization step: 4677. Total energy = 377.1349 kcal/mol (377.1315 without restraints) Performing minimization step: 4678. Total energy = 377.1058 kcal/mol (377.1023 without restraints) Performing minimization step: 4679. Total energy = 377.0768 kcal/mol (377.0734 without restraints) Performing minimization step: 4680. Total energy = 377.0477 kcal/mol (377.0442 without restraints) Performing minimization step: 4681. Total energy = 377.0185 kcal/mol (377.0151 without restraints) Performing minimization step: 4682. Total energy = 376.9894 kcal/mol (376.9860 without restraints) Performing minimization step: 4683. Total energy = 376.9603 kcal/mol (376.9568 without restraints) Performing minimization step: 4684. Total energy = 376.9312 kcal/mol (376.9277 without restraints) Performing minimization step: 4685. Total energy = 376.9021 kcal/mol (376.8986 without restraints) Performing minimization step: 4686. Total energy = 376.8730 kcal/mol (376.8696 without restraints) Performing minimization step: 4687. Total energy = 376.8437 kcal/mol (376.8403 without restraints) Performing minimization step: 4688. Total energy = 376.8146 kcal/mol (376.8112 without restraints) Performing minimization step: 4689. Total energy = 376.7856 kcal/mol (376.7822 without restraints) Performing minimization step: 4690. Total energy = 376.7566 kcal/mol (376.7531 without restraints) Performing minimization step: 4691. Total energy = 376.7275 kcal/mol (376.7241 without restraints) Performing minimization step: 4692. Total energy = 376.6985 kcal/mol (376.6951 without restraints) Performing minimization step: 4693. Total energy = 376.6695 kcal/mol (376.6661 without restraints) Performing minimization step: 4694. Total energy = 376.6405 kcal/mol (376.6371 without restraints) Performing minimization step: 4695. Total energy = 376.6115 kcal/mol (376.6081 without restraints) Performing minimization step: 4696. Total energy = 376.5825 kcal/mol (376.5791 without restraints) Performing minimization step: 4697. Total energy = 376.5536 kcal/mol (376.5501 without restraints) Performing minimization step: 4698. Total energy = 376.5246 kcal/mol (376.5212 without restraints) Performing minimization step: 4699. Total energy = 376.4956 kcal/mol (376.4922 without restraints) Performing minimization step: 4700. Total energy = 376.4668 kcal/mol (376.4635 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 376.4380 kcal/mol (376.4346 without restraints) Performing minimization step: 4702. Total energy = 376.4091 kcal/mol (376.4057 without restraints) Performing minimization step: 4703. Total energy = 376.3802 kcal/mol (376.3768 without restraints) Performing minimization step: 4704. Total energy = 376.3513 kcal/mol (376.3479 without restraints) Performing minimization step: 4705. Total energy = 376.3224 kcal/mol (376.3190 without restraints) Performing minimization step: 4706. Total energy = 376.2936 kcal/mol (376.2902 without restraints) Performing minimization step: 4707. Total energy = 376.2647 kcal/mol (376.2613 without restraints) Performing minimization step: 4708. Total energy = 376.2359 kcal/mol (376.2325 without restraints) Performing minimization step: 4709. Total energy = 376.2070 kcal/mol (376.2036 without restraints) Performing minimization step: 4710. Total energy = 376.1783 kcal/mol (376.1750 without restraints) Performing minimization step: 4711. Total energy = 376.1493 kcal/mol (376.1459 without restraints) Performing minimization step: 4712. Total energy = 376.1207 kcal/mol (376.1173 without restraints) Performing minimization step: 4713. Total energy = 376.0919 kcal/mol (376.0885 without restraints) Performing minimization step: 4714. Total energy = 376.0631 kcal/mol (376.0597 without restraints) Performing minimization step: 4715. Total energy = 376.0344 kcal/mol (376.0310 without restraints) Performing minimization step: 4716. Total energy = 376.0056 kcal/mol (376.0022 without restraints) Performing minimization step: 4717. Total energy = 375.9769 kcal/mol (375.9735 without restraints) Performing minimization step: 4718. Total energy = 375.9481 kcal/mol (375.9447 without restraints) Performing minimization step: 4719. Total energy = 375.9194 kcal/mol (375.9160 without restraints) Performing minimization step: 4720. Total energy = 375.8907 kcal/mol (375.8873 without restraints) Performing minimization step: 4721. Total energy = 375.8620 kcal/mol (375.8586 without restraints) Performing minimization step: 4722. Total energy = 375.8333 kcal/mol (375.8299 without restraints) Performing minimization step: 4723. Total energy = 375.8046 kcal/mol (375.8012 without restraints) Performing minimization step: 4724. Total energy = 375.7759 kcal/mol (375.7725 without restraints) Performing minimization step: 4725. Total energy = 375.7472 kcal/mol (375.7438 without restraints) Performing minimization step: 4726. Total energy = 375.7186 kcal/mol (375.7152 without restraints) Performing minimization step: 4727. Total energy = 375.6899 kcal/mol (375.6866 without restraints) Performing minimization step: 4728. Total energy = 375.6613 kcal/mol (375.6579 without restraints) Performing minimization step: 4729. Total energy = 375.6325 kcal/mol (375.6291 without restraints) Performing minimization step: 4730. Total energy = 375.6039 kcal/mol (375.6005 without restraints) Performing minimization step: 4731. Total energy = 375.5752 kcal/mol (375.5719 without restraints) Performing minimization step: 4732. Total energy = 375.5466 kcal/mol (375.5433 without restraints) Performing minimization step: 4733. Total energy = 375.5181 kcal/mol (375.5147 without restraints) Performing minimization step: 4734. Total energy = 375.4895 kcal/mol (375.4861 without restraints) Performing minimization step: 4735. Total energy = 375.4609 kcal/mol (375.4575 without restraints) Performing minimization step: 4736. Total energy = 375.4324 kcal/mol (375.4290 without restraints) Performing minimization step: 4737. Total energy = 375.4038 kcal/mol (375.4004 without restraints) Performing minimization step: 4738. Total energy = 375.3753 kcal/mol (375.3719 without restraints) Performing minimization step: 4739. Total energy = 375.3467 kcal/mol (375.3434 without restraints) Performing minimization step: 4740. Total energy = 375.3183 kcal/mol (375.3151 without restraints) Performing minimization step: 4741. Total energy = 375.2899 kcal/mol (375.2866 without restraints) Performing minimization step: 4742. Total energy = 375.2615 kcal/mol (375.2581 without restraints) Performing minimization step: 4743. Total energy = 375.2329 kcal/mol (375.2296 without restraints) Performing minimization step: 4744. Total energy = 375.2045 kcal/mol (375.2011 without restraints) Performing minimization step: 4745. Total energy = 375.1760 kcal/mol (375.1726 without restraints) Performing minimization step: 4746. Total energy = 375.1475 kcal/mol (375.1442 without restraints) Performing minimization step: 4747. Total energy = 375.1191 kcal/mol (375.1157 without restraints) Performing minimization step: 4748. Total energy = 375.0907 kcal/mol (375.0874 without restraints) Performing minimization step: 4749. Total energy = 375.0623 kcal/mol (375.0589 without restraints) Performing minimization step: 4750. Total energy = 375.0338 kcal/mol (375.0305 without restraints) Performing minimization step: 4751. Total energy = 375.0054 kcal/mol (375.0021 without restraints) Performing minimization step: 4752. Total energy = 374.9771 kcal/mol (374.9737 without restraints) Performing minimization step: 4753. Total energy = 374.9487 kcal/mol (374.9453 without restraints) Performing minimization step: 4754. Total energy = 374.9203 kcal/mol (374.9170 without restraints) Performing minimization step: 4755. Total energy = 374.8921 kcal/mol (374.8888 without restraints) Performing minimization step: 4756. Total energy = 374.8638 kcal/mol (374.8604 without restraints) Performing minimization step: 4757. Total energy = 374.8354 kcal/mol (374.8321 without restraints) Performing minimization step: 4758. Total energy = 374.8071 kcal/mol (374.8038 without restraints) Performing minimization step: 4759. Total energy = 374.7788 kcal/mol (374.7755 without restraints) Performing minimization step: 4760. Total energy = 374.7505 kcal/mol (374.7472 without restraints) Performing minimization step: 4761. Total energy = 374.7222 kcal/mol (374.7189 without restraints) Performing minimization step: 4762. Total energy = 374.6940 kcal/mol (374.6906 without restraints) Performing minimization step: 4763. Total energy = 374.6657 kcal/mol (374.6624 without restraints) Performing minimization step: 4764. Total energy = 374.6374 kcal/mol (374.6341 without restraints) Performing minimization step: 4765. Total energy = 374.6092 kcal/mol (374.6059 without restraints) Performing minimization step: 4766. Total energy = 374.5810 kcal/mol (374.5776 without restraints) Performing minimization step: 4767. Total energy = 374.5527 kcal/mol (374.5494 without restraints) Performing minimization step: 4768. Total energy = 374.5243 kcal/mol (374.5210 without restraints) Performing minimization step: 4769. Total energy = 374.4961 kcal/mol (374.4928 without restraints) Performing minimization step: 4770. Total energy = 374.4679 kcal/mol (374.4646 without restraints) Performing minimization step: 4771. Total energy = 374.4397 kcal/mol (374.4364 without restraints) Performing minimization step: 4772. Total energy = 374.4115 kcal/mol (374.4082 without restraints) Performing minimization step: 4773. Total energy = 374.3834 kcal/mol (374.3801 without restraints) Performing minimization step: 4774. Total energy = 374.3552 kcal/mol (374.3519 without restraints) Performing minimization step: 4775. Total energy = 374.3271 kcal/mol (374.3238 without restraints) Performing minimization step: 4776. Total energy = 374.2989 kcal/mol (374.2956 without restraints) Performing minimization step: 4777. Total energy = 374.2708 kcal/mol (374.2675 without restraints) Performing minimization step: 4778. Total energy = 374.2427 kcal/mol (374.2394 without restraints) Performing minimization step: 4779. Total energy = 374.2146 kcal/mol (374.2112 without restraints) Performing minimization step: 4780. Total energy = 374.1867 kcal/mol (374.1834 without restraints) Performing minimization step: 4781. Total energy = 374.1590 kcal/mol (374.1557 without restraints) Performing minimization step: 4782. Total energy = 374.1309 kcal/mol (374.1276 without restraints) Performing minimization step: 4783. Total energy = 374.1028 kcal/mol (374.0995 without restraints) Performing minimization step: 4784. Total energy = 374.0748 kcal/mol (374.0715 without restraints) Performing minimization step: 4785. Total energy = 374.0467 kcal/mol (374.0434 without restraints) Performing minimization step: 4786. Total energy = 374.0187 kcal/mol (374.0154 without restraints) Performing minimization step: 4787. Total energy = 373.9907 kcal/mol (373.9874 without restraints) Performing minimization step: 4788. Total energy = 373.9627 kcal/mol (373.9594 without restraints) Performing minimization step: 4789. Total energy = 373.9347 kcal/mol (373.9314 without restraints) Performing minimization step: 4790. Total energy = 373.9067 kcal/mol (373.9034 without restraints) Performing minimization step: 4791. Total energy = 373.8785 kcal/mol (373.8751 without restraints) Performing minimization step: 4792. Total energy = 373.8507 kcal/mol (373.8474 without restraints) Performing minimization step: 4793. Total energy = 373.8228 kcal/mol (373.8195 without restraints) Performing minimization step: 4794. Total energy = 373.7948 kcal/mol (373.7915 without restraints) Performing minimization step: 4795. Total energy = 373.7669 kcal/mol (373.7636 without restraints) Performing minimization step: 4796. Total energy = 373.7390 kcal/mol (373.7357 without restraints) Performing minimization step: 4797. Total energy = 373.7110 kcal/mol (373.7077 without restraints) Performing minimization step: 4798. Total energy = 373.6831 kcal/mol (373.6798 without restraints) Performing minimization step: 4799. Total energy = 373.6552 kcal/mol (373.6519 without restraints) Performing minimization step: 4800. Total energy = 373.6274 kcal/mol (373.6241 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 373.5995 kcal/mol (373.5962 without restraints) Performing minimization step: 4802. Total energy = 373.5716 kcal/mol (373.5683 without restraints) Performing minimization step: 4803. Total energy = 373.5438 kcal/mol (373.5405 without restraints) Performing minimization step: 4804. Total energy = 373.5159 kcal/mol (373.5126 without restraints) Performing minimization step: 4805. Total energy = 373.4881 kcal/mol (373.4848 without restraints) Performing minimization step: 4806. Total energy = 373.4603 kcal/mol (373.4570 without restraints) Performing minimization step: 4807. Total energy = 373.4325 kcal/mol (373.4292 without restraints) Performing minimization step: 4808. Total energy = 373.4047 kcal/mol (373.4014 without restraints) Performing minimization step: 4809. Total energy = 373.3769 kcal/mol (373.3736 without restraints) Performing minimization step: 4810. Total energy = 373.3491 kcal/mol (373.3458 without restraints) Performing minimization step: 4811. Total energy = 373.3213 kcal/mol (373.3180 without restraints) Performing minimization step: 4812. Total energy = 373.2937 kcal/mol (373.2905 without restraints) Performing minimization step: 4813. Total energy = 373.2658 kcal/mol (373.2625 without restraints) Performing minimization step: 4814. Total energy = 373.2380 kcal/mol (373.2348 without restraints) Performing minimization step: 4815. Total energy = 373.2103 kcal/mol (373.2070 without restraints) Performing minimization step: 4816. Total energy = 373.1826 kcal/mol (373.1793 without restraints) Performing minimization step: 4817. Total energy = 373.1549 kcal/mol (373.1517 without restraints) Performing minimization step: 4818. Total energy = 373.1272 kcal/mol (373.1240 without restraints) Performing minimization step: 4819. Total energy = 373.0995 kcal/mol (373.0963 without restraints) Performing minimization step: 4820. Total energy = 373.0718 kcal/mol (373.0686 without restraints) Performing minimization step: 4821. Total energy = 373.0440 kcal/mol (373.0407 without restraints) Performing minimization step: 4822. Total energy = 373.0164 kcal/mol (373.0132 without restraints) Performing minimization step: 4823. Total energy = 372.9888 kcal/mol (372.9855 without restraints) Performing minimization step: 4824. Total energy = 372.9611 kcal/mol (372.9579 without restraints) Performing minimization step: 4825. Total energy = 372.9335 kcal/mol (372.9303 without restraints) Performing minimization step: 4826. Total energy = 372.9059 kcal/mol (372.9027 without restraints) Performing minimization step: 4827. Total energy = 372.8783 kcal/mol (372.8751 without restraints) Performing minimization step: 4828. Total energy = 372.8507 kcal/mol (372.8475 without restraints) Performing minimization step: 4829. Total energy = 372.8231 kcal/mol (372.8199 without restraints) Performing minimization step: 4830. Total energy = 372.7956 kcal/mol (372.7923 without restraints) Performing minimization step: 4831. Total energy = 372.7680 kcal/mol (372.7648 without restraints) Performing minimization step: 4832. Total energy = 372.7405 kcal/mol (372.7372 without restraints) Performing minimization step: 4833. Total energy = 372.7131 kcal/mol (372.7099 without restraints) Performing minimization step: 4834. Total energy = 372.6856 kcal/mol (372.6823 without restraints) Performing minimization step: 4835. Total energy = 372.6581 kcal/mol (372.6548 without restraints) Performing minimization step: 4836. Total energy = 372.6306 kcal/mol (372.6273 without restraints) Performing minimization step: 4837. Total energy = 372.6030 kcal/mol (372.5998 without restraints) Performing minimization step: 4838. Total energy = 372.5755 kcal/mol (372.5723 without restraints) Performing minimization step: 4839. Total energy = 372.5481 kcal/mol (372.5448 without restraints) Performing minimization step: 4840. Total energy = 372.5206 kcal/mol (372.5174 without restraints) Performing minimization step: 4841. Total energy = 372.4932 kcal/mol (372.4899 without restraints) Performing minimization step: 4842. Total energy = 372.4657 kcal/mol (372.4625 without restraints) Performing minimization step: 4843. Total energy = 372.4383 kcal/mol (372.4350 without restraints) Performing minimization step: 4844. Total energy = 372.4110 kcal/mol (372.4078 without restraints) Performing minimization step: 4845. Total energy = 372.3836 kcal/mol (372.3804 without restraints) Performing minimization step: 4846. Total energy = 372.3562 kcal/mol (372.3530 without restraints) Performing minimization step: 4847. Total energy = 372.3288 kcal/mol (372.3256 without restraints) Performing minimization step: 4848. Total energy = 372.3015 kcal/mol (372.2982 without restraints) Performing minimization step: 4849. Total energy = 372.2742 kcal/mol (372.2710 without restraints) Performing minimization step: 4850. Total energy = 372.2469 kcal/mol (372.2437 without restraints) Performing minimization step: 4851. Total energy = 372.2194 kcal/mol (372.2163 without restraints) Performing minimization step: 4852. Total energy = 372.1922 kcal/mol (372.1890 without restraints) Performing minimization step: 4853. Total energy = 372.1651 kcal/mol (372.1618 without restraints) Performing minimization step: 4854. Total energy = 372.1377 kcal/mol (372.1345 without restraints) Performing minimization step: 4855. Total energy = 372.1104 kcal/mol (372.1072 without restraints) Performing minimization step: 4856. Total energy = 372.0833 kcal/mol (372.0801 without restraints) Performing minimization step: 4857. Total energy = 372.0561 kcal/mol (372.0528 without restraints) Performing minimization step: 4858. Total energy = 372.0286 kcal/mol (372.0253 without restraints) Performing minimization step: 4859. Total energy = 372.0013 kcal/mol (371.9981 without restraints) Performing minimization step: 4860. Total energy = 371.9739 kcal/mol (371.9706 without restraints) Performing minimization step: 4861. Total energy = 371.9466 kcal/mol (371.9434 without restraints) Performing minimization step: 4862. Total energy = 371.9196 kcal/mol (371.9164 without restraints) Performing minimization step: 4863. Total energy = 371.8924 kcal/mol (371.8892 without restraints) Performing minimization step: 4864. Total energy = 371.8651 kcal/mol (371.8619 without restraints) Performing minimization step: 4865. Total energy = 371.8379 kcal/mol (371.8347 without restraints) Performing minimization step: 4866. Total energy = 371.8107 kcal/mol (371.8075 without restraints) Performing minimization step: 4867. Total energy = 371.7836 kcal/mol (371.7804 without restraints) Performing minimization step: 4868. Total energy = 371.7564 kcal/mol (371.7532 without restraints) Performing minimization step: 4869. Total energy = 371.7293 kcal/mol (371.7261 without restraints) Performing minimization step: 4870. Total energy = 371.7021 kcal/mol (371.6989 without restraints) Performing minimization step: 4871. Total energy = 371.6752 kcal/mol (371.6720 without restraints) Performing minimization step: 4872. Total energy = 371.6480 kcal/mol (371.6448 without restraints) Performing minimization step: 4873. Total energy = 371.6209 kcal/mol (371.6177 without restraints) Performing minimization step: 4874. Total energy = 371.5938 kcal/mol (371.5906 without restraints) Performing minimization step: 4875. Total energy = 371.5667 kcal/mol (371.5635 without restraints) Performing minimization step: 4876. Total energy = 371.5396 kcal/mol (371.5364 without restraints) Performing minimization step: 4877. Total energy = 371.5125 kcal/mol (371.5093 without restraints) Performing minimization step: 4878. Total energy = 371.4853 kcal/mol (371.4820 without restraints) Performing minimization step: 4879. Total energy = 371.4582 kcal/mol (371.4550 without restraints) Performing minimization step: 4880. Total energy = 371.4311 kcal/mol (371.4279 without restraints) Performing minimization step: 4881. Total energy = 371.4041 kcal/mol (371.4009 without restraints) Performing minimization step: 4882. Total energy = 371.3770 kcal/mol (371.3738 without restraints) Performing minimization step: 4883. Total energy = 371.3500 kcal/mol (371.3468 without restraints) Performing minimization step: 4884. Total energy = 371.3230 kcal/mol (371.3198 without restraints) Performing minimization step: 4885. Total energy = 371.2960 kcal/mol (371.2928 without restraints) Performing minimization step: 4886. Total energy = 371.2690 kcal/mol (371.2658 without restraints) Performing minimization step: 4887. Total energy = 371.2420 kcal/mol (371.2388 without restraints) Performing minimization step: 4888. Total energy = 371.2151 kcal/mol (371.2119 without restraints) Performing minimization step: 4889. Total energy = 371.1881 kcal/mol (371.1849 without restraints) Performing minimization step: 4890. Total energy = 371.1612 kcal/mol (371.1580 without restraints) Performing minimization step: 4891. Total energy = 371.1342 kcal/mol (371.1310 without restraints) Performing minimization step: 4892. Total energy = 371.1073 kcal/mol (371.1041 without restraints) Performing minimization step: 4893. Total energy = 371.0803 kcal/mol (371.0772 without restraints) Performing minimization step: 4894. Total energy = 371.0534 kcal/mol (371.0503 without restraints) Performing minimization step: 4895. Total energy = 371.0265 kcal/mol (371.0234 without restraints) Performing minimization step: 4896. Total energy = 370.9997 kcal/mol (370.9965 without restraints) Performing minimization step: 4897. Total energy = 370.9728 kcal/mol (370.9696 without restraints) Performing minimization step: 4898. Total energy = 370.9459 kcal/mol (370.9427 without restraints) Performing minimization step: 4899. Total energy = 370.9191 kcal/mol (370.9159 without restraints) Performing minimization step: 4900. Total energy = 370.8922 kcal/mol (370.8891 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 370.8654 kcal/mol (370.8622 without restraints) Performing minimization step: 4902. Total energy = 370.8386 kcal/mol (370.8354 without restraints) Performing minimization step: 4903. Total energy = 370.8118 kcal/mol (370.8086 without restraints) Performing minimization step: 4904. Total energy = 370.7849 kcal/mol (370.7818 without restraints) Performing minimization step: 4905. Total energy = 370.7582 kcal/mol (370.7550 without restraints) Performing minimization step: 4906. Total energy = 370.7314 kcal/mol (370.7282 without restraints) Performing minimization step: 4907. Total energy = 370.7046 kcal/mol (370.7014 without restraints) Performing minimization step: 4908. Total energy = 370.6778 kcal/mol (370.6747 without restraints) Performing minimization step: 4909. Total energy = 370.6511 kcal/mol (370.6479 without restraints) Performing minimization step: 4910. Total energy = 370.6244 kcal/mol (370.6212 without restraints) Performing minimization step: 4911. Total energy = 370.5976 kcal/mol (370.5945 without restraints) Performing minimization step: 4912. Total energy = 370.5709 kcal/mol (370.5678 without restraints) Performing minimization step: 4913. Total energy = 370.5442 kcal/mol (370.5410 without restraints) Performing minimization step: 4914. Total energy = 370.5175 kcal/mol (370.5143 without restraints) Performing minimization step: 4915. Total energy = 370.4908 kcal/mol (370.4877 without restraints) Performing minimization step: 4916. Total energy = 370.4641 kcal/mol (370.4610 without restraints) Performing minimization step: 4917. Total energy = 370.4375 kcal/mol (370.4343 without restraints) Performing minimization step: 4918. Total energy = 370.4109 kcal/mol (370.4079 without restraints) Performing minimization step: 4919. Total energy = 370.3844 kcal/mol (370.3813 without restraints) Performing minimization step: 4920. Total energy = 370.3578 kcal/mol (370.3547 without restraints) Performing minimization step: 4921. Total energy = 370.3312 kcal/mol (370.3280 without restraints) Performing minimization step: 4922. Total energy = 370.3046 kcal/mol (370.3014 without restraints) Performing minimization step: 4923. Total energy = 370.2779 kcal/mol (370.2748 without restraints) Performing minimization step: 4924. Total energy = 370.2513 kcal/mol (370.2482 without restraints) Performing minimization step: 4925. Total energy = 370.2248 kcal/mol (370.2216 without restraints) Performing minimization step: 4926. Total energy = 370.1982 kcal/mol (370.1951 without restraints) Performing minimization step: 4927. Total energy = 370.1716 kcal/mol (370.1685 without restraints) Performing minimization step: 4928. Total energy = 370.1451 kcal/mol (370.1419 without restraints) Performing minimization step: 4929. Total energy = 370.1185 kcal/mol (370.1154 without restraints) Performing minimization step: 4930. Total energy = 370.0920 kcal/mol (370.0889 without restraints) Performing minimization step: 4931. Total energy = 370.0655 kcal/mol (370.0624 without restraints) Performing minimization step: 4932. Total energy = 370.0392 kcal/mol (370.0360 without restraints) Performing minimization step: 4933. Total energy = 370.0127 kcal/mol (370.0095 without restraints) Performing minimization step: 4934. Total energy = 369.9862 kcal/mol (369.9830 without restraints) Performing minimization step: 4935. Total energy = 369.9597 kcal/mol (369.9566 without restraints) Performing minimization step: 4936. Total energy = 369.9332 kcal/mol (369.9301 without restraints) Performing minimization step: 4937. Total energy = 369.9068 kcal/mol (369.9036 without restraints) Performing minimization step: 4938. Total energy = 369.8803 kcal/mol (369.8772 without restraints) Performing minimization step: 4939. Total energy = 369.8539 kcal/mol (369.8508 without restraints) Performing minimization step: 4940. Total energy = 369.8274 kcal/mol (369.8243 without restraints) Performing minimization step: 4941. Total energy = 369.8009 kcal/mol (369.7977 without restraints) Performing minimization step: 4942. Total energy = 369.7744 kcal/mol (369.7713 without restraints) Performing minimization step: 4943. Total energy = 369.7481 kcal/mol (369.7450 without restraints) Performing minimization step: 4944. Total energy = 369.7217 kcal/mol (369.7186 without restraints) Performing minimization step: 4945. Total energy = 369.6953 kcal/mol (369.6922 without restraints) Performing minimization step: 4946. Total energy = 369.6689 kcal/mol (369.6658 without restraints) Performing minimization step: 4947. Total energy = 369.6426 kcal/mol (369.6395 without restraints) Performing minimization step: 4948. Total energy = 369.6162 kcal/mol (369.6131 without restraints) Performing minimization step: 4949. Total energy = 369.5899 kcal/mol (369.5868 without restraints) Performing minimization step: 4950. Total energy = 369.5636 kcal/mol (369.5605 without restraints) Performing minimization step: 4951. Total energy = 369.5371 kcal/mol (369.5340 without restraints) Performing minimization step: 4952. Total energy = 369.5108 kcal/mol (369.5076 without restraints) Performing minimization step: 4953. Total energy = 369.4842 kcal/mol (369.4811 without restraints) Performing minimization step: 4954. Total energy = 369.4580 kcal/mol (369.4549 without restraints) Performing minimization step: 4955. Total energy = 369.4315 kcal/mol (369.4284 without restraints) Performing minimization step: 4956. Total energy = 369.4052 kcal/mol (369.4021 without restraints) Performing minimization step: 4957. Total energy = 369.3790 kcal/mol (369.3759 without restraints) Performing minimization step: 4958. Total energy = 369.3528 kcal/mol (369.3497 without restraints) Performing minimization step: 4959. Total energy = 369.3265 kcal/mol (369.3234 without restraints) Performing minimization step: 4960. Total energy = 369.3003 kcal/mol (369.2972 without restraints) Performing minimization step: 4961. Total energy = 369.2741 kcal/mol (369.2710 without restraints) Performing minimization step: 4962. Total energy = 369.2479 kcal/mol (369.2448 without restraints) Performing minimization step: 4963. Total energy = 369.2217 kcal/mol (369.2186 without restraints) Performing minimization step: 4964. Total energy = 369.1955 kcal/mol (369.1924 without restraints) Performing minimization step: 4965. Total energy = 369.1693 kcal/mol (369.1663 without restraints) Performing minimization step: 4966. Total energy = 369.1431 kcal/mol (369.1400 without restraints) Performing minimization step: 4967. Total energy = 369.1169 kcal/mol (369.1139 without restraints) Performing minimization step: 4968. Total energy = 369.0908 kcal/mol (369.0877 without restraints) Performing minimization step: 4969. Total energy = 369.0647 kcal/mol (369.0616 without restraints) Performing minimization step: 4970. Total energy = 369.0386 kcal/mol (369.0355 without restraints) Performing minimization step: 4971. Total energy = 369.0125 kcal/mol (369.0095 without restraints) Performing minimization step: 4972. Total energy = 368.9867 kcal/mol (368.9836 without restraints) Performing minimization step: 4973. Total energy = 368.9606 kcal/mol (368.9576 without restraints) Performing minimization step: 4974. Total energy = 368.9346 kcal/mol (368.9315 without restraints) Performing minimization step: 4975. Total energy = 368.9084 kcal/mol (368.9054 without restraints) Performing minimization step: 4976. Total energy = 368.8824 kcal/mol (368.8793 without restraints) Performing minimization step: 4977. Total energy = 368.8563 kcal/mol (368.8533 without restraints) Performing minimization step: 4978. Total energy = 368.8303 kcal/mol (368.8272 without restraints) Performing minimization step: 4979. Total energy = 368.8043 kcal/mol (368.8012 without restraints) Performing minimization step: 4980. Total energy = 368.7782 kcal/mol (368.7752 without restraints) Performing minimization step: 4981. Total energy = 368.7524 kcal/mol (368.7494 without restraints) Performing minimization step: 4982. Total energy = 368.7265 kcal/mol (368.7234 without restraints) Performing minimization step: 4983. Total energy = 368.7005 kcal/mol (368.6975 without restraints) Performing minimization step: 4984. Total energy = 368.6746 kcal/mol (368.6715 without restraints) Performing minimization step: 4985. Total energy = 368.6486 kcal/mol (368.6455 without restraints) Performing minimization step: 4986. Total energy = 368.6224 kcal/mol (368.6194 without restraints) Performing minimization step: 4987. Total energy = 368.5967 kcal/mol (368.5936 without restraints) Performing minimization step: 4988. Total energy = 368.5708 kcal/mol (368.5677 without restraints) Performing minimization step: 4989. Total energy = 368.5448 kcal/mol (368.5418 without restraints) Performing minimization step: 4990. Total energy = 368.5189 kcal/mol (368.5159 without restraints) Performing minimization step: 4991. Total energy = 368.4930 kcal/mol (368.4900 without restraints) Performing minimization step: 4992. Total energy = 368.4671 kcal/mol (368.4640 without restraints) Performing minimization step: 4993. Total energy = 368.4412 kcal/mol (368.4382 without restraints) Performing minimization step: 4994. Total energy = 368.4153 kcal/mol (368.4123 without restraints) Performing minimization step: 4995. Total energy = 368.3895 kcal/mol (368.3864 without restraints) Performing minimization step: 4996. Total energy = 368.3636 kcal/mol (368.3606 without restraints) Performing minimization step: 4997. Total energy = 368.3378 kcal/mol (368.3347 without restraints) Performing minimization step: 4998. Total energy = 368.3119 kcal/mol (368.3089 without restraints) Performing minimization step: 4999. Total energy = 368.2861 kcal/mol (368.2830 without restraints) Performing minimization step: 5000. Total energy = 368.2603 kcal/mol (368.2572 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/0cf156ba/tmp/C12_refx/C12_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to C12_refx.pdb DONE!