============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization.pdb ============================================================================= Atom's 1 O5' residue renamed to RA5 Atom's 2 C5' residue renamed to RA5 Atom's 3 C4' residue renamed to RA5 Atom's 4 O4' residue renamed to RA5 Atom's 5 C3' residue renamed to RA5 Atom's 6 O3' residue renamed to RA5 Atom's 7 C2' residue renamed to RA5 Atom's 8 O2' residue renamed to RA5 Atom's 9 C1' residue renamed to RA5 Atom's 10 N9 residue renamed to RA5 Atom's 11 C8 residue renamed to RA5 Atom's 12 N7 residue renamed to RA5 Atom's 13 C5 residue renamed to RA5 Atom's 14 C6 residue renamed to RA5 Atom's 15 N6 residue renamed to RA5 Atom's 16 N1 residue renamed to RA5 Atom's 17 C2 residue renamed to RA5 Atom's 18 N3 residue renamed to RA5 Atom's 19 C4 residue renamed to RA5 Atom's 1446 C4 residue renamed to RA3 Atom's 1445 N3 residue renamed to RA3 Atom's 1444 C2 residue renamed to RA3 Atom's 1443 N1 residue renamed to RA3 Atom's 1442 N6 residue renamed to RA3 Atom's 1441 C6 residue renamed to RA3 Atom's 1440 C5 residue renamed to RA3 Atom's 1439 N7 residue renamed to RA3 Atom's 1438 C8 residue renamed to RA3 Atom's 1437 N9 residue renamed to RA3 Atom's 1436 C1' residue renamed to RA3 Atom's 1435 O2' residue renamed to RA3 Atom's 1434 C2' residue renamed to RA3 Atom's 1433 O3' residue renamed to RA3 Atom's 1432 C3' residue renamed to RA3 Atom's 1431 O4' residue renamed to RA3 Atom's 1430 C4' residue renamed to RA3 Atom's 1429 C5' residue renamed to RA3 Atom's 1428 O5' residue renamed to RA3 Atom's 1427 OP2 residue renamed to RA3 Atom's 1426 OP1 residue renamed to RA3 Atom's 1425 P residue renamed to RA3 Missing atom added: ATOM 1 H5T RA5 S -20 -48.361 25.454 -44.957 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RA5 S -20 -50.791 26.908 -45.059 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RA5 S -20 -49.485 28.073 -45.668 1.00 0.00 H Missing atom added: ATOM 23 H4' RA5 S -20 -51.162 29.158 -44.536 1.00 0.00 H Missing atom added: ATOM 24 H3' RA5 S -20 -48.382 29.248 -43.602 1.00 0.00 H Missing atom added: ATOM 27 H1' RA5 S -20 -51.356 29.388 -41.031 1.00 0.00 H Missing atom added: ATOM 25 H2' RA5 S -20 -49.375 30.846 -41.911 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RA5 S -20 -51.407 30.872 -43.671 1.00 0.00 H Missing atom added: ATOM 28 H8 RA5 S -20 -48.962 26.625 -42.038 1.00 0.00 H Missing atom added: ATOM 29 H61 RA5 S -20 -46.968 25.518 -37.674 1.00 0.00 H Missing atom added: ATOM 30 H62 RA5 S -20 -47.116 26.289 -36.157 1.00 0.00 H Missing atom added: ATOM 31 H2 RA5 S -20 -50.193 29.782 -36.231 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S -19 -49.758 32.314 -48.719 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S -19 -48.158 32.468 -47.795 1.00 0.00 H Missing atom added: ATOM 25 H4' A S -19 -48.270 34.412 -48.187 1.00 0.00 H Missing atom added: ATOM 26 H3' A S -19 -48.028 33.125 -45.441 1.00 0.00 H Missing atom added: ATOM 29 H1' A S -19 -49.552 36.527 -45.720 1.00 0.00 H Missing atom added: ATOM 27 H2' A S -19 -47.481 35.572 -44.816 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S -19 -47.327 35.824 -47.583 1.00 0.00 H Missing atom added: ATOM 30 H8 A S -19 -50.948 33.085 -45.168 1.00 0.00 H Missing atom added: ATOM 31 H61 A S -19 -52.255 33.273 -40.535 1.00 0.00 H Missing atom added: ATOM 32 H62 A S -19 -52.134 34.491 -39.344 1.00 0.00 H Missing atom added: ATOM 33 H2 A S -19 -49.858 38.276 -40.974 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S -18 -45.377 35.359 -44.605 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S -18 -43.920 34.534 -43.810 1.00 0.00 H Missing atom added: ATOM 25 H4' A S -18 -44.608 36.294 -42.560 1.00 0.00 H Missing atom added: ATOM 26 H3' A S -18 -44.527 33.612 -41.406 1.00 0.00 H Missing atom added: ATOM 29 H1' A S -18 -47.153 36.188 -40.249 1.00 0.00 H Missing atom added: ATOM 27 H2' A S -18 -45.168 35.021 -39.322 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S -18 -44.530 37.103 -41.019 1.00 0.00 H Missing atom added: ATOM 30 H8 A S -18 -47.235 33.100 -42.313 1.00 0.00 H Missing atom added: ATOM 31 H61 A S -18 -49.912 30.469 -39.629 1.00 0.00 H Missing atom added: ATOM 32 H62 A S -18 -50.588 30.573 -38.064 1.00 0.00 H Missing atom added: ATOM 33 H2 A S -18 -48.949 34.411 -35.837 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S -17 -43.354 36.996 -39.681 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S -17 -41.635 37.219 -39.028 1.00 0.00 H Missing atom added: ATOM 26 H4' G S -17 -43.635 38.355 -38.050 1.00 0.00 H Missing atom added: ATOM 27 H3' G S -17 -42.311 36.757 -36.249 1.00 0.00 H Missing atom added: ATOM 30 H1' G S -17 -46.204 36.844 -36.099 1.00 0.00 H Missing atom added: ATOM 28 H2' G S -17 -44.168 37.659 -34.716 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S -17 -44.644 39.306 -36.847 1.00 0.00 H Missing atom added: ATOM 31 H8 G S -17 -44.178 34.042 -37.355 1.00 0.00 H Missing atom added: ATOM 34 H1 G S -17 -46.339 32.842 -30.978 1.00 0.00 H Missing atom added: ATOM 32 H21 G S -17 -46.874 36.418 -31.572 1.00 0.00 H Missing atom added: ATOM 33 H22 G S -17 -46.569 35.192 -30.475 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S -16 -42.628 40.445 -35.220 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S -16 -41.094 40.699 -34.212 1.00 0.00 H Missing atom added: ATOM 23 H4' C S -16 -42.420 40.705 -32.625 1.00 0.00 H Missing atom added: ATOM 24 H3' C S -16 -40.067 38.866 -33.100 1.00 0.00 H Missing atom added: ATOM 27 H1' C S -16 -43.078 37.955 -30.772 1.00 0.00 H Missing atom added: ATOM 25 H2' C S -16 -40.599 38.447 -30.542 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S -16 -41.945 40.812 -31.063 1.00 0.00 H Missing atom added: ATOM 30 H6 C S -16 -41.784 36.883 -33.860 1.00 0.00 H Missing atom added: ATOM 28 H41 C S -16 -40.720 32.316 -33.314 1.00 0.00 H Missing atom added: ATOM 29 H42 C S -16 -40.895 32.121 -31.622 1.00 0.00 H Missing atom added: ATOM 31 H5 C S -16 -41.046 34.419 -34.805 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S -15 -40.693 42.273 -30.727 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S -15 -39.361 42.817 -29.559 1.00 0.00 H Missing atom added: ATOM 23 H4' C S -15 -41.165 42.940 -28.353 1.00 0.00 H Missing atom added: ATOM 24 H3' C S -15 -38.968 40.928 -27.631 1.00 0.00 H Missing atom added: ATOM 27 H1' C S -15 -42.536 40.404 -26.456 1.00 0.00 H Missing atom added: ATOM 25 H2' C S -15 -40.375 40.894 -25.411 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S -15 -41.288 43.225 -26.615 1.00 0.00 H Missing atom added: ATOM 30 H6 C S -15 -40.085 39.012 -28.709 1.00 0.00 H Missing atom added: ATOM 28 H41 C S -15 -39.445 34.548 -27.388 1.00 0.00 H Missing atom added: ATOM 29 H42 C S -15 -40.203 34.528 -25.852 1.00 0.00 H Missing atom added: ATOM 31 H5 C S -15 -39.199 36.462 -29.115 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S -14 -38.264 44.259 -27.885 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S -14 -38.108 45.729 -26.767 1.00 0.00 H Missing atom added: ATOM 23 H4' C S -14 -38.993 46.680 -28.369 1.00 0.00 H Missing atom added: ATOM 24 H3' C S -14 -39.634 46.653 -25.492 1.00 0.00 H Missing atom added: ATOM 27 H1' C S -14 -42.267 47.418 -28.262 1.00 0.00 H Missing atom added: ATOM 25 H2' C S -14 -41.036 48.725 -26.403 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S -14 -39.197 48.401 -28.369 1.00 0.00 H Missing atom added: ATOM 30 H6 C S -14 -41.594 44.874 -25.847 1.00 0.00 H Missing atom added: ATOM 28 H41 C S -14 -45.497 44.490 -23.243 1.00 0.00 H Missing atom added: ATOM 29 H42 C S -14 -46.437 45.794 -23.832 1.00 0.00 H Missing atom added: ATOM 31 H5 C S -14 -43.146 43.667 -23.931 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S -13 -39.088 51.173 -26.708 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S -13 -38.446 51.907 -25.133 1.00 0.00 H Missing atom added: ATOM 26 H4' G S -13 -40.348 52.953 -26.096 1.00 0.00 H Missing atom added: ATOM 27 H3' G S -13 -40.930 51.810 -23.500 1.00 0.00 H Missing atom added: ATOM 30 H1' G S -13 -43.583 51.680 -26.228 1.00 0.00 H Missing atom added: ATOM 28 H2' G S -13 -43.227 52.815 -24.013 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S -13 -41.801 54.127 -25.901 1.00 0.00 H Missing atom added: ATOM 31 H8 G S -13 -41.402 48.960 -24.801 1.00 0.00 H Missing atom added: ATOM 34 H1 G S -13 -47.663 48.648 -22.113 1.00 0.00 H Missing atom added: ATOM 32 H21 G S -13 -47.398 51.970 -23.572 1.00 0.00 H Missing atom added: ATOM 33 H22 G S -13 -48.009 50.991 -22.360 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S -12 -42.521 53.400 -22.375 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S -12 -42.443 55.236 -22.145 1.00 0.00 H Missing atom added: ATOM 26 H4' G S -12 -44.165 54.049 -21.031 1.00 0.00 H Missing atom added: ATOM 27 H3' G S -12 -42.280 55.245 -19.180 1.00 0.00 H Missing atom added: ATOM 30 H1' G S -12 -43.625 51.811 -18.369 1.00 0.00 H Missing atom added: ATOM 28 H2' G S -12 -43.794 54.205 -17.464 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S -12 -45.418 53.922 -19.625 1.00 0.00 H Missing atom added: ATOM 31 H8 G S -12 -40.245 52.476 -19.689 1.00 0.00 H Missing atom added: ATOM 34 H1 G S -12 -40.107 51.614 -12.906 1.00 0.00 H Missing atom added: ATOM 32 H21 G S -12 -43.621 52.163 -13.769 1.00 0.00 H Missing atom added: ATOM 33 H22 G S -12 -42.399 52.297 -12.635 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S -11 -44.360 57.014 -15.996 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S -11 -44.667 58.796 -16.395 1.00 0.00 H Missing atom added: ATOM 26 H4' G S -11 -43.184 58.191 -14.541 1.00 0.00 H Missing atom added: ATOM 27 H3' G S -11 -41.625 59.344 -16.757 1.00 0.00 H Missing atom added: ATOM 30 H1' G S -11 -40.212 56.434 -14.710 1.00 0.00 H Missing atom added: ATOM 28 H2' G S -11 -39.735 58.897 -15.063 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S -11 -41.845 58.636 -13.367 1.00 0.00 H Missing atom added: ATOM 31 H8 G S -11 -41.589 56.406 -18.135 1.00 0.00 H Missing atom added: ATOM 34 H1 G S -11 -34.767 56.604 -18.385 1.00 0.00 H Missing atom added: ATOM 32 H21 G S -11 -35.682 57.631 -14.988 1.00 0.00 H Missing atom added: ATOM 33 H22 G S -11 -34.599 57.735 -16.259 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S -10 -44.663 60.769 -15.246 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S -10 -44.862 61.641 -16.870 1.00 0.00 H Missing atom added: ATOM 25 H4' A S -10 -46.738 61.751 -15.454 1.00 0.00 H Missing atom added: ATOM 26 H3' A S -10 -45.284 64.258 -16.088 1.00 0.00 H Missing atom added: ATOM 29 H1' A S -10 -47.124 63.791 -12.699 1.00 0.00 H Missing atom added: ATOM 27 H2' A S -10 -47.436 65.047 -14.723 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S -10 -48.276 62.553 -15.354 1.00 0.00 H Missing atom added: ATOM 30 H8 A S -10 -43.519 63.860 -13.730 1.00 0.00 H Missing atom added: ATOM 31 H61 A S -10 -41.964 68.044 -11.878 1.00 0.00 H Missing atom added: ATOM 32 H62 A S -10 -42.761 69.323 -11.076 1.00 0.00 H Missing atom added: ATOM 33 H2 A S -10 -47.411 68.652 -10.922 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S -9 -47.775 64.985 -16.251 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S -9 -48.619 66.011 -17.544 1.00 0.00 H Missing atom added: ATOM 23 H4' C S -9 -49.415 66.610 -15.808 1.00 0.00 H Missing atom added: ATOM 24 H3' C S -9 -48.786 67.571 -18.336 1.00 0.00 H Missing atom added: ATOM 27 H1' C S -9 -48.548 69.911 -15.409 1.00 0.00 H Missing atom added: ATOM 25 H2' C S -9 -50.081 69.595 -17.285 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S -9 -50.678 67.620 -15.505 1.00 0.00 H Missing atom added: ATOM 30 H6 C S -9 -46.294 68.199 -17.617 1.00 0.00 H Missing atom added: ATOM 28 H41 C S -9 -44.044 71.536 -20.095 1.00 0.00 H Missing atom added: ATOM 29 H42 C S -9 -44.880 72.942 -19.590 1.00 0.00 H Missing atom added: ATOM 31 H5 C S -9 -44.381 69.045 -19.409 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S -8 -52.590 68.251 -17.224 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S -8 -53.535 68.630 -18.773 1.00 0.00 H Missing atom added: ATOM 23 H4' C S -8 -53.895 70.390 -17.712 1.00 0.00 H Missing atom added: ATOM 24 H3' C S -8 -52.682 70.067 -20.439 1.00 0.00 H Missing atom added: ATOM 27 H1' C S -8 -52.103 73.184 -18.348 1.00 0.00 H Missing atom added: ATOM 25 H2' C S -8 -53.290 72.597 -20.538 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S -8 -54.901 71.741 -18.521 1.00 0.00 H Missing atom added: ATOM 30 H6 C S -8 -50.231 70.266 -19.578 1.00 0.00 H Missing atom added: ATOM 28 H41 C S -8 -46.674 72.158 -22.066 1.00 0.00 H Missing atom added: ATOM 29 H42 C S -8 -47.048 73.827 -21.987 1.00 0.00 H Missing atom added: ATOM 31 H5 C S -8 -47.882 70.114 -20.966 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S -7 -56.793 71.538 -23.602 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S -7 -55.046 71.606 -24.216 1.00 0.00 H Missing atom added: ATOM 23 H4' C S -7 -55.548 72.647 -25.535 1.00 0.00 H Missing atom added: ATOM 24 H3' C S -7 -53.147 71.973 -23.822 1.00 0.00 H Missing atom added: ATOM 27 H1' C S -7 -53.665 75.416 -25.427 1.00 0.00 H Missing atom added: ATOM 25 H2' C S -7 -52.044 73.521 -25.647 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S -7 -54.321 72.895 -26.980 1.00 0.00 H Missing atom added: ATOM 30 H6 C S -7 -53.903 73.752 -22.226 1.00 0.00 H Missing atom added: ATOM 28 H41 C S -7 -50.706 76.008 -19.637 1.00 0.00 H Missing atom added: ATOM 29 H42 C S -7 -49.926 76.943 -20.840 1.00 0.00 H Missing atom added: ATOM 31 H5 C S -7 -52.707 74.420 -19.775 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S -6 -52.078 71.059 -28.348 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S -6 -50.450 70.178 -28.249 1.00 0.00 H Missing atom added: ATOM 25 H4' A S -6 -50.578 71.697 -29.993 1.00 0.00 H Missing atom added: ATOM 26 H3' A S -6 -48.654 72.466 -27.817 1.00 0.00 H Missing atom added: ATOM 29 H1' A S -6 -50.492 75.090 -29.923 1.00 0.00 H Missing atom added: ATOM 27 H2' A S -6 -48.228 74.307 -29.658 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S -6 -49.579 72.512 -31.212 1.00 0.00 H Missing atom added: ATOM 30 H8 A S -6 -50.507 73.601 -26.419 1.00 0.00 H Missing atom added: ATOM 31 H61 A S -6 -50.310 77.512 -24.084 1.00 0.00 H Missing atom added: ATOM 32 H62 A S -6 -49.841 79.121 -24.411 1.00 0.00 H Missing atom added: ATOM 33 H2 A S -6 -48.138 79.512 -28.773 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S -5 -46.569 73.593 -30.566 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S -5 -44.820 73.505 -29.958 1.00 0.00 H Missing atom added: ATOM 23 H4' C S -5 -44.864 75.461 -30.270 1.00 0.00 H Missing atom added: ATOM 24 H3' C S -5 -43.714 73.703 -28.350 1.00 0.00 H Missing atom added: ATOM 27 H1' C S -5 -44.872 77.209 -27.263 1.00 0.00 H Missing atom added: ATOM 25 H2' C S -5 -42.695 75.871 -27.465 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S -5 -43.523 76.530 -29.966 1.00 0.00 H Missing atom added: ATOM 30 H6 C S -5 -46.129 73.980 -26.583 1.00 0.00 H Missing atom added: ATOM 28 H41 C S -5 -45.142 73.255 -21.995 1.00 0.00 H Missing atom added: ATOM 29 H42 C S -5 -44.086 74.564 -21.675 1.00 0.00 H Missing atom added: ATOM 31 H5 C S -5 -46.326 72.564 -24.240 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S -4 -38.932 77.007 -29.742 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S -4 -39.253 76.870 -27.922 1.00 0.00 H Missing atom added: ATOM 23 H4' U S -4 -38.898 79.077 -28.592 1.00 0.00 H Missing atom added: ATOM 24 H3' U S -4 -41.469 78.568 -27.355 1.00 0.00 H Missing atom added: ATOM 27 H1' U S -4 -41.122 81.145 -30.261 1.00 0.00 H Missing atom added: ATOM 25 H2' U S -4 -41.629 81.138 -27.715 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S -4 -38.956 80.821 -28.101 1.00 0.00 H Missing atom added: ATOM 29 H6 U S -4 -42.479 78.103 -30.698 1.00 0.00 H Missing atom added: ATOM 30 H3 U S -4 -46.093 81.743 -29.896 1.00 0.00 H Missing atom added: ATOM 28 H5 U S -4 -44.828 77.503 -31.072 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S -3 -41.080 81.104 -25.856 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S -3 -40.604 81.248 -24.072 1.00 0.00 H Missing atom added: ATOM 26 H4' G S -3 -42.200 82.782 -24.998 1.00 0.00 H Missing atom added: ATOM 27 H3' G S -3 -43.246 81.112 -22.942 1.00 0.00 H Missing atom added: ATOM 30 H1' G S -3 -45.472 82.054 -25.941 1.00 0.00 H Missing atom added: ATOM 28 H2' G S -3 -45.322 82.525 -23.397 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S -3 -43.569 84.042 -24.825 1.00 0.00 H Missing atom added: ATOM 31 H8 G S -3 -43.883 78.871 -25.296 1.00 0.00 H Missing atom added: ATOM 34 H1 G S -3 -49.898 78.731 -22.213 1.00 0.00 H Missing atom added: ATOM 32 H21 G S -3 -49.631 82.064 -23.746 1.00 0.00 H Missing atom added: ATOM 33 H22 G S -3 -50.429 81.018 -22.712 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S -2 -44.019 84.029 -21.082 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S -2 -43.091 84.096 -19.480 1.00 0.00 H Missing atom added: ATOM 26 H4' G S -2 -45.550 84.153 -19.540 1.00 0.00 H Missing atom added: ATOM 27 H3' G S -2 -44.594 81.569 -18.480 1.00 0.00 H Missing atom added: ATOM 30 H1' G S -2 -47.716 81.777 -20.707 1.00 0.00 H Missing atom added: ATOM 28 H2' G S -2 -47.165 81.266 -18.299 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S -2 -47.159 83.956 -18.659 1.00 0.00 H Missing atom added: ATOM 31 H8 G S -2 -44.326 80.478 -21.605 1.00 0.00 H Missing atom added: ATOM 34 H1 G S -2 -48.688 75.462 -20.030 1.00 0.00 H Missing atom added: ATOM 32 H21 G S -2 -49.922 78.643 -18.477 1.00 0.00 H Missing atom added: ATOM 33 H22 G S -2 -49.766 76.986 -18.299 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S -1 -46.912 83.255 -15.653 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S -1 -46.082 83.153 -14.000 1.00 0.00 H Missing atom added: ATOM 26 H4' G S -1 -48.420 82.489 -14.260 1.00 0.00 H Missing atom added: ATOM 27 H3' G S -1 -46.834 79.986 -13.944 1.00 0.00 H Missing atom added: ATOM 30 H1' G S -1 -49.687 80.054 -16.412 1.00 0.00 H Missing atom added: ATOM 28 H2' G S -1 -49.228 79.046 -14.278 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S -1 -49.868 81.648 -13.745 1.00 0.00 H Missing atom added: ATOM 31 H8 G S -1 -46.083 80.084 -17.198 1.00 0.00 H Missing atom added: ATOM 34 H1 G S -1 -48.373 73.641 -17.477 1.00 0.00 H Missing atom added: ATOM 32 H21 G S -1 -50.954 75.529 -15.686 1.00 0.00 H Missing atom added: ATOM 33 H22 G S -1 -50.225 74.058 -16.013 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 0 -49.615 79.101 -12.544 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 0 -49.917 78.899 -10.727 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 0 -51.220 77.641 -12.228 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 0 -49.348 76.177 -10.520 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 0 -50.184 74.755 -13.891 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 0 -50.605 74.173 -11.515 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 0 -52.293 76.178 -12.396 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 0 -47.183 76.652 -12.623 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 0 -43.839 73.119 -12.547 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 0 -43.930 71.450 -12.901 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 0 -48.330 70.118 -13.843 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 13 -53.235 79.984 -10.408 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 13 -53.993 80.037 -8.718 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 13 -55.349 80.897 -9.174 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 13 -53.936 80.701 -7.000 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 13 -57.227 78.764 -6.804 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 13 -55.651 80.800 -5.560 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 13 -56.945 81.827 -7.246 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 13 -57.300 76.576 -5.965 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 13 -53.504 74.408 -3.334 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 13 -51.897 74.932 -3.086 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 13 -50.861 78.975 -5.235 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 14 -56.297 84.183 -6.624 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 14 -56.035 85.357 -8.033 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 14 -57.298 85.865 -8.047 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 14 -58.228 86.446 -7.593 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 14 -57.191 85.367 -11.247 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 14 -58.596 87.375 -10.016 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 14 -55.971 87.803 -9.772 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 14 -60.303 86.400 -10.283 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 14 -60.353 79.801 -12.196 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 14 -56.997 80.383 -10.982 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 14 -58.099 79.480 -11.859 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 15 -57.482 89.214 -4.854 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 15 -59.029 90.221 -5.006 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 15 -57.789 90.884 -3.276 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 15 -57.712 92.901 -5.610 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 15 -55.093 92.394 -2.720 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 15 -56.369 94.271 -5.077 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 15 -57.382 94.949 -4.381 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 15 -54.184 94.715 -4.366 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 15 -49.837 90.195 -1.551 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 15 -53.197 88.942 -0.726 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 15 -51.599 89.131 -0.266 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 16 -58.744 96.163 -3.321 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 16 -60.542 96.480 -2.998 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 16 -60.321 98.054 -2.673 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 16 -62.054 95.869 -2.240 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 16 -63.701 98.113 -4.184 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 16 -63.681 95.863 -2.294 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 16 -63.904 96.612 -1.198 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 16 -64.204 94.684 -4.825 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 16 -65.041 94.884 -9.620 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 16 -64.431 95.934 -10.821 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 16 -62.939 99.965 -8.970 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 17 -60.797 96.261 2.492 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 17 -60.454 98.061 2.769 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 17 -59.472 95.876 3.659 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 17 -58.608 96.237 4.493 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 17 -57.889 93.451 1.569 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 17 -57.610 93.984 4.476 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 17 -59.831 93.258 4.221 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 17 -56.524 92.917 0.559 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 17 -53.395 96.176 3.135 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 17 -54.094 92.976 -0.022 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 18 -58.239 95.982 8.082 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 18 -58.069 94.464 7.031 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 18 -57.209 95.026 9.305 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 18 -56.839 93.536 9.679 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 18 -59.531 95.354 12.157 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 18 -56.688 94.264 12.144 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 18 -56.400 96.535 11.244 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 18 -60.510 92.538 11.000 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 18 -60.886 90.115 14.888 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 18 -60.469 90.352 16.527 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 18 -58.387 94.659 17.110 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 19 -52.898 97.308 11.018 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 19 -52.201 96.023 12.157 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 19 -52.170 98.458 11.553 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 19 -51.191 98.749 12.105 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 19 -54.197 100.816 10.702 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 19 -51.376 100.899 10.791 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 19 -52.010 99.420 8.799 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 19 -53.738 100.030 14.174 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 19 -53.779 104.617 15.538 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 19 -53.258 106.085 14.838 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 19 -52.564 105.302 10.087 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 20 -46.465 98.968 11.645 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 20 -47.467 99.399 13.143 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 20 -46.086 101.047 12.970 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 20 -48.877 101.490 13.415 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 20 -46.621 103.803 10.948 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 20 -48.546 103.854 13.406 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 20 -46.547 103.507 14.405 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 20 -48.748 105.269 12.091 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 20 -50.259 104.196 5.538 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 20 -47.919 101.487 6.427 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 20 -48.664 102.438 5.269 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 21 -50.685 99.622 16.209 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 21 -50.855 101.148 15.171 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 21 -52.386 99.742 16.550 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 21 -50.573 100.160 19.040 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 21 -52.799 96.920 17.420 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 21 -52.606 98.526 19.853 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 21 -53.751 100.177 18.181 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 21 -53.577 95.569 18.272 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 21 -49.200 94.963 20.994 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 21 -53.257 93.464 19.474 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 22 -54.079 101.911 18.703 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 22 -54.501 102.902 20.211 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 22 -56.411 102.519 19.152 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 22 -55.810 100.351 21.461 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 22 -57.920 99.380 18.970 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 22 -56.552 98.994 21.634 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 22 -57.508 99.304 22.390 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 22 -56.043 97.306 20.361 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 22 -56.015 96.525 13.537 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 22 -57.282 99.831 14.096 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 22 -57.471 98.382 13.282 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S 23 -60.259 100.264 24.072 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S 23 -61.320 101.722 23.642 1.00 0.00 H Missing atom added: ATOM 23 H4' C S 23 -62.421 101.362 24.115 1.00 0.00 H Missing atom added: ATOM 24 H3' C S 23 -61.635 103.709 24.685 1.00 0.00 H Missing atom added: ATOM 27 H1' C S 23 -64.524 102.295 24.868 1.00 0.00 H Missing atom added: ATOM 25 H2' C S 23 -62.568 104.281 25.627 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S 23 -63.002 105.163 24.705 1.00 0.00 H Missing atom added: ATOM 30 H6 C S 23 -63.393 103.172 27.369 1.00 0.00 H Missing atom added: ATOM 28 H41 C S 23 -64.464 100.016 30.774 1.00 0.00 H Missing atom added: ATOM 29 H42 C S 23 -64.997 98.636 29.911 1.00 0.00 H Missing atom added: ATOM 31 H5 C S 23 -63.641 102.306 29.934 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 24 -66.692 103.687 23.193 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 24 -65.532 102.479 23.988 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 24 -68.030 102.581 23.323 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 24 -68.228 101.614 24.127 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 24 -69.355 100.839 21.070 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 24 -68.919 100.324 23.976 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 24 -70.006 100.888 24.393 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 24 -66.108 99.917 20.553 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 24 -67.477 95.356 19.038 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 24 -69.040 94.669 19.092 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 24 -72.350 97.340 20.824 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 25 -72.829 104.350 22.394 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 25 -71.294 104.324 21.355 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 25 -73.113 105.688 20.625 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 25 -71.996 107.705 22.862 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 25 -75.386 107.525 20.761 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 25 -73.385 109.405 21.558 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 25 -72.408 108.134 19.552 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 25 -73.880 108.026 23.942 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 25 -78.278 110.490 22.776 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 25 -75.078 109.085 25.775 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 26 -72.668 110.267 23.369 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 26 -71.206 111.293 23.861 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 26 -72.237 111.250 25.601 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 26 -71.562 112.684 25.398 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 26 -69.924 109.908 27.894 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 26 -71.289 112.499 27.974 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 26 -73.233 111.100 27.652 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 26 -69.105 110.108 29.268 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 26 -66.459 113.812 26.676 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 26 -67.019 111.054 30.340 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 27 -72.287 113.842 27.385 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 27 -73.899 114.653 27.808 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 27 -71.650 115.012 28.843 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 27 -71.953 115.009 29.958 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 27 -70.036 117.678 28.551 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 27 -71.524 116.341 30.872 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 27 -70.492 115.866 31.415 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 27 -73.243 118.501 29.768 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 27 -71.446 123.067 30.779 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 27 -69.922 123.729 30.385 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 27 -67.170 120.906 28.002 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 28 -71.541 114.404 32.002 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 28 -70.326 114.575 33.391 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 28 -71.940 113.661 34.343 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 28 -71.930 114.658 35.172 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 28 -70.138 111.624 36.353 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 28 -72.248 112.829 36.941 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 28 -72.926 111.398 34.799 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 28 -69.575 115.041 35.473 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 28 -69.233 113.993 40.496 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 28 -68.687 116.795 36.981 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 29 -77.160 114.954 36.307 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 29 -76.352 114.409 37.882 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 29 -78.561 113.835 37.735 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 29 -78.942 114.602 38.528 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 29 -79.225 110.765 38.456 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 29 -80.790 112.939 38.784 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 29 -80.538 112.802 36.266 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 29 -76.640 111.964 40.436 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 29 -82.035 109.915 44.079 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 29 -83.479 111.027 40.821 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 29 -83.690 110.813 42.467 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 30 -78.596 117.518 37.096 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 30 -79.709 118.512 38.195 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 30 -78.654 119.998 37.262 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 30 -81.671 119.825 36.292 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 30 -78.635 121.938 35.015 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 30 -81.032 122.379 35.803 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 30 -79.657 121.848 38.017 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 30 -81.872 121.464 34.270 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 30 -78.331 121.610 30.471 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 30 -82.656 121.881 31.886 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 31 -83.841 120.236 40.093 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 31 -83.076 121.033 41.580 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 31 -84.727 119.880 42.279 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 31 -81.923 118.529 42.880 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 31 -85.344 116.918 43.212 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 31 -83.337 117.377 44.730 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 31 -84.572 119.715 44.600 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 31 -82.196 116.898 41.369 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 31 -83.369 112.634 44.001 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 31 -80.558 115.078 41.471 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 32 -82.656 119.203 47.085 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 32 -80.970 119.512 47.788 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 32 -82.496 118.321 49.084 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 32 -80.538 116.334 48.561 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 32 -84.393 115.581 48.070 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 32 -82.195 114.789 49.677 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 32 -82.943 116.801 50.867 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 32 -81.064 114.596 47.567 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 32 -85.009 111.646 46.092 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 32 -80.602 112.418 46.873 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 33 -80.468 119.230 51.866 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 33 -78.672 118.917 52.201 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 33 -79.715 120.755 53.333 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 33 -79.301 118.849 55.545 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 33 -82.494 120.617 55.487 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 33 -80.379 120.021 57.116 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 33 -80.018 122.032 55.817 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 33 -82.091 117.590 53.745 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 33 -83.116 113.960 56.622 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 33 -83.523 113.840 58.277 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 33 -83.301 118.147 60.371 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 34 -78.007 120.657 59.305 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 34 -76.267 120.146 58.925 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 34 -78.015 120.447 60.714 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 34 -77.592 119.174 61.310 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 34 -81.207 119.514 60.936 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 34 -79.320 119.216 62.688 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 34 -79.424 121.591 62.173 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 34 -79.935 118.286 58.002 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 34 -80.479 114.375 61.257 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 34 -79.853 116.016 57.083 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 35 -78.459 120.484 64.468 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 35 -77.017 120.933 65.541 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 35 -78.238 119.118 66.319 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 35 -75.464 118.479 65.320 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 35 -78.608 115.972 64.991 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 35 -75.460 116.356 65.791 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 35 -76.546 116.824 67.626 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 35 -77.369 117.214 62.146 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 35 -77.957 110.404 63.046 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 35 -77.957 111.800 66.296 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 35 -77.672 110.546 65.225 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 36 -74.024 121.220 69.652 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 36 -74.016 119.893 70.946 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 36 -74.525 121.628 72.040 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 36 -73.639 120.984 72.988 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 36 -77.439 120.588 73.799 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 36 -75.237 121.732 74.806 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 36 -76.023 123.359 72.999 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 36 -75.681 118.056 72.664 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 36 -75.941 118.204 77.805 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 36 -75.396 115.924 73.928 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 37 -73.159 123.051 76.561 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 37 -71.418 123.579 76.209 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 37 -71.450 121.929 77.811 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 37 -70.258 120.906 75.194 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 37 -71.910 118.697 77.960 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 37 -69.707 118.945 76.789 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 37 -69.905 120.863 78.615 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 37 -73.000 119.825 74.482 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 37 -71.310 113.230 75.072 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 37 -70.121 114.846 78.151 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 37 -69.932 113.558 77.100 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 38 -67.016 122.044 77.891 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 38 -65.564 122.074 76.741 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 38 -65.179 121.383 79.029 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 38 -65.274 118.854 77.272 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 38 -66.435 119.013 81.105 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 38 -64.694 117.650 79.379 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 38 -63.378 119.623 79.943 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 38 -67.926 118.131 77.872 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 38 -68.310 113.211 82.555 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 38 -66.142 115.877 84.072 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 38 -66.378 114.230 83.895 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 39 -61.600 117.670 78.978 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 39 -60.509 117.038 77.620 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 39 -61.186 116.103 79.940 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 39 -60.811 114.546 79.765 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 39 -64.657 115.342 80.750 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 39 -62.483 114.309 81.936 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 39 -61.868 116.861 81.911 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 39 -63.967 114.008 77.836 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 39 -65.275 110.377 81.363 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 39 -64.530 111.795 77.038 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 40 -57.926 112.072 80.755 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 40 -59.195 112.349 79.434 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 40 -59.330 110.680 79.020 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 40 -58.350 111.214 77.999 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 40 -62.269 111.444 77.348 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 40 -59.939 109.998 76.482 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 40 -60.644 108.823 78.639 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 40 -62.921 111.395 75.399 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 40 -58.157 116.047 73.723 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 40 -57.860 115.635 77.296 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 40 -57.726 116.633 75.959 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 41 -55.758 109.759 79.303 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 41 -55.036 109.323 77.652 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 41 -53.430 109.287 79.251 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 41 -53.659 107.520 77.277 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 41 -53.270 105.451 79.697 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 41 -53.268 106.156 76.909 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 41 -51.896 106.147 77.044 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 41 -56.220 105.995 80.802 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 41 -58.351 101.758 79.722 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 41 -57.864 100.396 78.814 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 41 -53.584 101.379 76.739 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 42 -49.379 109.199 80.975 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 42 -49.716 109.989 79.333 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 42 -47.857 110.616 80.739 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 42 -46.993 110.076 78.401 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 42 -44.910 108.272 80.250 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 42 -45.765 109.626 77.723 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 42 -45.068 110.697 77.980 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 42 -47.778 106.653 79.434 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 42 -43.197 104.265 78.952 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 42 -47.739 104.252 79.119 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 43 -43.046 111.454 81.974 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 43 -44.749 111.513 82.702 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 43 -44.181 111.173 84.173 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 43 -44.151 109.846 84.342 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 43 -47.732 111.815 84.298 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 43 -46.039 110.046 86.080 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 43 -45.093 112.298 86.390 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 43 -49.231 111.684 84.515 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 43 -48.556 106.599 83.495 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 43 -51.246 110.246 84.473 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 44 -43.367 107.125 86.439 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 44 -41.925 107.297 87.590 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 44 -41.348 105.713 87.110 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 44 -39.699 107.038 85.159 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 44 -39.832 104.160 88.052 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 44 -37.808 105.742 86.547 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 44 -38.697 107.483 88.179 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 44 -40.964 103.194 85.392 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 44 -36.289 101.304 86.520 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 44 -40.137 101.340 83.994 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 45 -37.428 105.640 85.191 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 45 -35.939 106.433 84.426 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 45 -35.603 105.092 83.564 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 45 -35.618 108.228 82.974 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 45 -35.802 106.191 80.296 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 45 -34.452 108.094 81.116 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 45 -33.397 106.018 82.111 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 45 -38.510 105.958 80.303 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 45 -39.050 112.754 80.914 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 45 -36.098 111.788 82.825 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 45 -37.584 112.556 82.819 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S 46 -30.769 106.388 83.743 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S 46 -31.564 106.298 85.415 1.00 0.00 H Missing atom added: ATOM 23 H4' C S 46 -29.993 105.600 86.114 1.00 0.00 H Missing atom added: ATOM 24 H3' C S 46 -30.349 104.408 86.179 1.00 0.00 H Missing atom added: ATOM 27 H1' C S 46 -31.373 106.207 89.096 1.00 0.00 H Missing atom added: ATOM 25 H2' C S 46 -29.874 104.097 88.395 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S 46 -28.403 106.159 88.340 1.00 0.00 H Missing atom added: ATOM 30 H6 C S 46 -32.754 105.117 86.107 1.00 0.00 H Missing atom added: ATOM 28 H41 C S 46 -36.302 102.146 87.391 1.00 0.00 H Missing atom added: ATOM 29 H42 C S 46 -35.929 101.972 89.053 1.00 0.00 H Missing atom added: ATOM 31 H5 C S 46 -34.865 103.599 85.518 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S 47 -26.181 101.518 85.732 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S 47 -24.909 102.414 86.739 1.00 0.00 H Missing atom added: ATOM 23 H4' C S 47 -23.941 101.209 85.093 1.00 0.00 H Missing atom added: ATOM 24 H3' C S 47 -23.167 100.813 86.074 1.00 0.00 H Missing atom added: ATOM 27 H1' C S 47 -21.300 103.006 84.522 1.00 0.00 H Missing atom added: ATOM 25 H2' C S 47 -21.664 100.845 86.400 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S 47 -21.145 100.004 85.595 1.00 0.00 H Missing atom added: ATOM 30 H6 C S 47 -20.965 102.719 87.572 1.00 0.00 H Missing atom added: ATOM 28 H41 C S 47 -19.475 106.709 89.258 1.00 0.00 H Missing atom added: ATOM 29 H42 C S 47 -19.825 107.848 88.029 1.00 0.00 H Missing atom added: ATOM 31 H5 C S 47 -19.741 104.306 89.449 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S 48 -22.608 95.944 83.054 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S 48 -23.482 96.046 84.686 1.00 0.00 H Missing atom added: ATOM 23 H4' C S 48 -22.036 94.318 84.680 1.00 0.00 H Missing atom added: ATOM 24 H3' C S 48 -22.907 93.507 84.728 1.00 0.00 H Missing atom added: ATOM 27 H1' C S 48 -21.358 93.907 87.661 1.00 0.00 H Missing atom added: ATOM 25 H2' C S 48 -23.272 92.593 85.890 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S 48 -22.526 91.640 85.501 1.00 0.00 H Missing atom added: ATOM 30 H6 C S 48 -23.511 96.476 87.671 1.00 0.00 H Missing atom added: ATOM 28 H41 C S 48 -25.677 95.691 91.870 1.00 0.00 H Missing atom added: ATOM 29 H42 C S 48 -24.993 94.184 92.308 1.00 0.00 H Missing atom added: ATOM 31 H5 C S 48 -25.230 97.160 89.691 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 49 -17.599 91.851 85.258 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 49 -17.698 90.058 84.799 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 49 -16.107 90.538 86.420 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 49 -18.404 89.174 87.880 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 49 -16.427 91.526 89.694 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 49 -18.617 89.424 89.562 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 49 -17.908 88.477 89.953 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 49 -19.529 92.502 88.830 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 49 -17.288 93.551 93.292 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 49 -20.695 93.918 90.364 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 50 -15.020 84.908 89.828 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 50 -14.789 86.293 91.038 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 50 -13.774 85.645 92.005 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 50 -14.530 84.763 92.554 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 50 -14.070 88.438 93.663 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 50 -14.073 85.410 94.632 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 50 -12.013 85.892 94.038 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 50 -16.744 86.446 93.718 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 50 -16.783 91.580 94.465 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 50 -18.859 87.485 94.412 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S 51 -14.241 81.826 94.264 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S 51 -12.898 80.578 93.989 1.00 0.00 H Missing atom added: ATOM 23 H4' C S 51 -14.224 79.321 93.958 1.00 0.00 H Missing atom added: ATOM 24 H3' C S 51 -11.507 79.600 93.230 1.00 0.00 H Missing atom added: ATOM 27 H1' C S 51 -13.536 77.847 90.755 1.00 0.00 H Missing atom added: ATOM 25 H2' C S 51 -10.837 78.768 91.870 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S 51 -10.681 77.650 92.697 1.00 0.00 H Missing atom added: ATOM 30 H6 C S 51 -11.887 80.739 90.070 1.00 0.00 H Missing atom added: ATOM 28 H41 C S 51 -12.559 80.448 85.322 1.00 0.00 H Missing atom added: ATOM 29 H42 C S 51 -13.614 79.103 85.223 1.00 0.00 H Missing atom added: ATOM 31 H5 C S 51 -11.408 81.521 87.437 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 52 -14.495 76.570 96.498 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 52 -14.883 78.025 95.418 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 52 -16.188 77.969 97.290 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 52 -14.097 80.212 97.450 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 52 -15.676 78.396 100.514 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 52 -15.535 81.000 99.456 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 52 -17.348 79.803 98.025 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 52 -12.617 79.173 98.784 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 52 -13.054 80.381 103.811 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 52 -10.632 80.235 99.933 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 53 -13.331 82.264 97.264 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 53 -14.157 82.870 98.808 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 53 -12.608 83.606 99.324 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 53 -14.859 82.806 100.252 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 53 -15.613 85.804 100.322 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 53 -15.973 83.112 100.921 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 53 -15.466 83.269 102.079 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 53 -15.732 85.570 96.727 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 53 -21.697 86.906 99.788 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 53 -19.820 84.489 102.028 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 53 -21.322 84.759 101.341 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U S 54 -11.527 82.870 103.599 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U S 54 -12.317 83.745 105.029 1.00 0.00 H Missing atom added: ATOM 23 H4' U S 54 -11.331 83.037 106.148 1.00 0.00 H Missing atom added: ATOM 24 H3' U S 54 -13.477 82.943 106.320 1.00 0.00 H Missing atom added: ATOM 27 H1' U S 54 -11.830 85.939 108.130 1.00 0.00 H Missing atom added: ATOM 25 H2' U S 54 -13.347 83.418 108.695 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U S 54 -10.990 82.772 108.532 1.00 0.00 H Missing atom added: ATOM 29 H6 U S 54 -14.472 85.767 105.944 1.00 0.00 H Missing atom added: ATOM 30 H3 U S 54 -14.608 88.614 110.278 1.00 0.00 H Missing atom added: ATOM 28 H5 U S 54 -16.139 87.408 106.133 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A S 55 -15.762 81.621 105.741 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A S 55 -15.062 82.858 106.931 1.00 0.00 H Missing atom added: ATOM 25 H4' A S 55 -17.405 82.491 107.003 1.00 0.00 H Missing atom added: ATOM 26 H3' A S 55 -17.963 81.094 105.570 1.00 0.00 H Missing atom added: ATOM 29 H1' A S 55 -19.235 82.839 108.948 1.00 0.00 H Missing atom added: ATOM 27 H2' A S 55 -20.060 80.888 106.931 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A S 55 -18.425 79.656 108.403 1.00 0.00 H Missing atom added: ATOM 30 H8 A S 55 -20.782 83.063 105.715 1.00 0.00 H Missing atom added: ATOM 31 H61 A S 55 -23.575 86.585 107.670 1.00 0.00 H Missing atom added: ATOM 32 H62 A S 55 -23.247 87.676 108.943 1.00 0.00 H Missing atom added: ATOM 33 H2 A S 55 -19.545 86.400 111.443 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G S 56 -16.375 76.329 103.960 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G S 56 -18.151 76.612 103.515 1.00 0.00 H Missing atom added: ATOM 26 H4' G S 56 -17.822 74.456 103.795 1.00 0.00 H Missing atom added: ATOM 27 H3' G S 56 -18.210 75.480 106.829 1.00 0.00 H Missing atom added: ATOM 30 H1' G S 56 -16.774 72.347 105.935 1.00 0.00 H Missing atom added: ATOM 28 H2' G S 56 -18.486 73.391 107.607 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G S 56 -19.707 72.889 105.472 1.00 0.00 H Missing atom added: ATOM 31 H8 G S 56 -16.617 72.437 108.534 1.00 0.00 H Missing atom added: ATOM 34 H1 G S 56 -12.843 78.125 108.240 1.00 0.00 H Missing atom added: ATOM 32 H21 G S 56 -13.718 77.237 104.679 1.00 0.00 H Missing atom added: ATOM 33 H22 G S 56 -12.489 77.849 105.635 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S 57 -21.782 76.626 109.337 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S 57 -20.487 77.589 108.424 1.00 0.00 H Missing atom added: ATOM 23 H4' C S 57 -21.283 77.594 110.844 1.00 0.00 H Missing atom added: ATOM 24 H3' C S 57 -22.606 78.180 110.535 1.00 0.00 H Missing atom added: ATOM 27 H1' C S 57 -20.227 77.197 113.494 1.00 0.00 H Missing atom added: ATOM 25 H2' C S 57 -22.887 77.902 112.983 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S 57 -22.889 75.475 112.459 1.00 0.00 H Missing atom added: ATOM 30 H6 C S 57 -20.908 79.583 110.957 1.00 0.00 H Missing atom added: ATOM 28 H41 C S 57 -20.517 83.732 113.034 1.00 0.00 H Missing atom added: ATOM 29 H42 C S 57 -20.436 83.359 114.703 1.00 0.00 H Missing atom added: ATOM 31 H5 C S 57 -20.686 82.247 110.985 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C S 58 -26.167 76.635 111.893 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C S 58 -27.308 77.349 110.619 1.00 0.00 H Missing atom added: ATOM 23 H4' C S 58 -27.970 77.824 112.846 1.00 0.00 H Missing atom added: ATOM 24 H3' C S 58 -26.965 80.123 111.161 1.00 0.00 H Missing atom added: ATOM 27 H1' C S 58 -27.074 79.552 115.317 1.00 0.00 H Missing atom added: ATOM 25 H2' C S 58 -27.350 81.713 112.869 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C S 58 -29.062 81.550 112.984 1.00 0.00 H Missing atom added: ATOM 30 H6 C S 58 -24.386 80.122 114.303 1.00 0.00 H Missing atom added: ATOM 28 H41 C S 58 -22.897 81.477 118.580 1.00 0.00 H Missing atom added: ATOM 29 H42 C S 58 -24.341 81.498 119.499 1.00 0.00 H Missing atom added: ATOM 31 H5 C S 58 -22.534 81.012 116.039 1.00 0.00 H Missing atom added: ATOM 23 H5'1 RA3 S 59 -31.212 80.516 112.865 1.00 0.00 H Missing atom added: ATOM 24 H5'2 RA3 S 59 -32.344 81.226 111.580 1.00 0.00 H Missing atom added: ATOM 25 H4' RA3 S 59 -32.905 82.069 113.626 1.00 0.00 H Missing atom added: ATOM 26 H3' RA3 S 59 -32.018 84.107 111.656 1.00 0.00 H Missing atom added: ATOM 29 H1' RA3 S 59 -30.621 84.950 114.531 1.00 0.00 H Missing atom added: ATOM 27 H2' RA3 S 59 -31.493 85.539 111.952 1.00 0.00 H Missing atom added: ATOM 28 HO'2 RA3 S 59 -32.659 86.105 112.746 1.00 0.00 H Missing atom added: ATOM 30 H8 RA3 S 59 -29.103 84.477 111.398 1.00 0.00 H Missing atom added: ATOM 31 H61 RA3 S 59 -24.790 85.956 112.856 1.00 0.00 H Missing atom added: ATOM 32 H62 RA3 S 59 -23.834 85.660 114.240 1.00 0.00 H Missing atom added: ATOM 33 H2 RA3 S 59 -26.710 83.403 117.507 1.00 0.00 H Missing atom added: ATOM 34 H3T RA3 S 59 -33.345 84.397 114.177 1.00 0.00 H Number of atoms: 2177 Number of residues: 68 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2347 Number of angles built: 4200 Number of dihedrals built: 6402 Number of impropers built: 462 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 2362029 Number of van der Waals pairs: 152450 Number of H-bonds built: 11 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 2 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 31673.0427 kcal/mol (31662.5701 without restraints) Performing minimization step: 2. Total energy = 31564.2630 kcal/mol (31549.6630 without restraints) Performing minimization step: 3. Total energy = 31452.3641 kcal/mol (31437.9159 without restraints) Performing minimization step: 4. Total energy = 31342.5270 kcal/mol (31328.4052 without restraints) Performing minimization step: 5. Total energy = 31235.2336 kcal/mol (31221.3617 without restraints) Performing minimization step: 6. Total energy = 31129.8593 kcal/mol (31116.1853 without restraints) Performing minimization step: 7. Total energy = 31026.1940 kcal/mol (31012.7176 without restraints) Performing minimization step: 8. Total energy = 30924.1983 kcal/mol (30910.9173 without restraints) Performing minimization step: 9. Total energy = 30823.8431 kcal/mol (30810.7538 without restraints) Performing minimization step: 10. Total energy = 30725.0899 kcal/mol (30712.1869 without restraints) Performing minimization step: 11. Total energy = 30627.8884 kcal/mol (30615.1654 without restraints) Performing minimization step: 12. Total energy = 30532.1841 kcal/mol (30519.6345 without restraints) Performing minimization step: 13. Total energy = 30437.9224 kcal/mol (30425.5400 without restraints) Performing minimization step: 14. Total energy = 30345.0525 kcal/mol (30332.8315 without restraints) Performing minimization step: 15. Total energy = 30253.5276 kcal/mol (30241.4627 without restraints) Performing minimization step: 16. Total energy = 30163.3051 kcal/mol (30151.3915 without restraints) Performing minimization step: 17. Total energy = 30074.3447 kcal/mol (30062.5779 without restraints) Performing minimization step: 18. Total energy = 29986.6098 kcal/mol (29974.9855 without restraints) Performing minimization step: 19. Total energy = 29900.0652 kcal/mol (29888.5795 without restraints) Performing minimization step: 20. Total energy = 29814.6779 kcal/mol (29803.3269 without restraints) Performing minimization step: 21. Total energy = 29730.4165 kcal/mol (29719.1966 without restraints) Performing minimization step: 22. Total energy = 29647.2503 kcal/mol (29636.1580 without restraints) Performing minimization step: 23. Total energy = 29565.1506 kcal/mol (29554.1826 without restraints) Performing minimization step: 24. Total energy = 29484.0897 kcal/mol (29473.2427 without restraints) Performing minimization step: 25. Total energy = 29404.0409 kcal/mol (29393.3119 without restraints) Performing minimization step: 26. Total energy = 29324.9785 kcal/mol (29314.3644 without restraints) Performing minimization step: 27. Total energy = 29246.8777 kcal/mol (29236.3757 without restraints) Performing minimization step: 28. Total energy = 29169.7149 kcal/mol (29159.3223 without restraints) Performing minimization step: 29. Total energy = 29093.4669 kcal/mol (29083.1810 without restraints) Performing minimization step: 30. Total energy = 29018.1115 kcal/mol (29007.9298 without restraints) Performing minimization step: 31. Total energy = 28943.6275 kcal/mol (28933.5474 without restraints) Performing minimization step: 32. Total energy = 28869.9943 kcal/mol (28860.0134 without restraints) Performing minimization step: 33. Total energy = 28797.1918 kcal/mol (28787.3079 without restraints) Performing minimization step: 34. Total energy = 28725.2009 kcal/mol (28715.4117 without restraints) Performing minimization step: 35. Total energy = 28654.0028 kcal/mol (28644.3062 without restraints) Performing minimization step: 36. Total energy = 28583.5796 kcal/mol (28573.9734 without restraints) Performing minimization step: 37. Total energy = 28513.9138 kcal/mol (28504.3959 without restraints) Performing minimization step: 38. Total energy = 28444.9884 kcal/mol (28435.5571 without restraints) Performing minimization step: 39. Total energy = 28376.7874 kcal/mol (28367.4407 without restraints) Performing minimization step: 40. Total energy = 28309.2948 kcal/mol (28300.0308 without restraints) Performing minimization step: 41. Total energy = 28242.4952 kcal/mol (28233.3122 without restraints) Performing minimization step: 42. Total energy = 28176.3738 kcal/mol (28167.2700 without restraints) Performing minimization step: 43. Total energy = 28110.9160 kcal/mol (28101.8896 without restraints) Performing minimization step: 44. Total energy = 28046.1079 kcal/mol (28037.1575 without restraints) Performing minimization step: 45. Total energy = 27981.9360 kcal/mol (27973.0600 without restraints) Performing minimization step: 46. Total energy = 27918.3872 kcal/mol (27909.5840 without restraints) Performing minimization step: 47. Total energy = 27855.4487 kcal/mol (27846.7168 without restraints) Performing minimization step: 48. Total energy = 27793.1077 kcal/mol (27784.4457 without restraints) Performing minimization step: 49. Total energy = 27731.3524 kcal/mol (27722.7589 without restraints) Performing minimization step: 50. Total energy = 27670.1710 kcal/mol (27661.6446 without restraints) Performing minimization step: 51. Total energy = 27609.5521 kcal/mol (27601.0915 without restraints) Performing minimization step: 52. Total energy = 27549.4847 kcal/mol (27541.0885 without restraints) Performing minimization step: 53. Total energy = 27489.9578 kcal/mol (27481.6249 without restraints) Performing minimization step: 54. Total energy = 27430.9611 kcal/mol (27422.6902 without restraints) Performing minimization step: 55. Total energy = 27372.4842 kcal/mol (27364.2741 without restraints) Performing minimization step: 56. Total energy = 27314.5173 kcal/mol (27306.3669 without restraints) Performing minimization step: 57. Total energy = 27257.0506 kcal/mol (27248.9587 without restraints) Performing minimization step: 58. Total energy = 27200.0748 kcal/mol (27192.0403 without restraints) Performing minimization step: 59. Total energy = 27143.5806 kcal/mol (27135.6025 without restraints) Performing minimization step: 60. Total energy = 27087.5591 kcal/mol (27079.6364 without restraints) Performing minimization step: 61. Total energy = 27032.0016 kcal/mol (27024.1332 without restraints) Performing minimization step: 62. Total energy = 26976.8995 kcal/mol (26969.0844 without restraints) Performing minimization step: 63. Total energy = 26922.2446 kcal/mol (26914.4819 without restraints) Performing minimization step: 64. Total energy = 26868.0289 kcal/mol (26860.3175 without restraints) Performing minimization step: 65. Total energy = 26814.2443 kcal/mol (26806.5835 without restraints) Performing minimization step: 66. Total energy = 26760.8834 kcal/mol (26753.2721 without restraints) Performing minimization step: 67. Total energy = 26707.9384 kcal/mol (26700.3759 without restraints) Performing minimization step: 68. Total energy = 26655.4023 kcal/mol (26647.8877 without restraints) Performing minimization step: 69. Total energy = 26603.2677 kcal/mol (26595.8001 without restraints) Performing minimization step: 70. Total energy = 26551.5275 kcal/mol (26544.1061 without restraints) Performing minimization step: 71. Total energy = 26500.1753 kcal/mol (26492.7993 without restraints) Performing minimization step: 72. Total energy = 26449.2043 kcal/mol (26441.8730 without restraints) Performing minimization step: 73. Total energy = 26398.6080 kcal/mol (26391.3206 without restraints) Performing minimization step: 74. Total energy = 26348.3800 kcal/mol (26341.1358 without restraints) Performing minimization step: 75. Total energy = 26298.5142 kcal/mol (26291.3125 without restraints) Performing minimization step: 76. Total energy = 26249.0046 kcal/mol (26241.8446 without restraints) Performing minimization step: 77. Total energy = 26199.8454 kcal/mol (26192.7264 without restraints) Performing minimization step: 78. Total energy = 26151.0305 kcal/mol (26143.9518 without restraints) Performing minimization step: 79. Total energy = 26102.5543 kcal/mol (26095.5154 without restraints) Performing minimization step: 80. Total energy = 26054.4115 kcal/mol (26047.4117 without restraints) Performing minimization step: 81. Total energy = 26006.5968 kcal/mol (25999.6354 without restraints) Performing minimization step: 82. Total energy = 25959.1044 kcal/mol (25952.1808 without restraints) Performing minimization step: 83. Total energy = 25911.9295 kcal/mol (25905.0432 without restraints) Performing minimization step: 84. Total energy = 25865.0672 kcal/mol (25858.2176 without restraints) Performing minimization step: 85. Total energy = 25818.5124 kcal/mol (25811.6988 without restraints) Performing minimization step: 86. Total energy = 25772.2601 kcal/mol (25765.4820 without restraints) Performing minimization step: 87. Total energy = 25726.3060 kcal/mol (25719.5628 without restraints) Performing minimization step: 88. Total energy = 25680.6452 kcal/mol (25673.9365 without restraints) Performing minimization step: 89. Total energy = 25635.2733 kcal/mol (25628.5985 without restraints) Performing minimization step: 90. Total energy = 25590.1859 kcal/mol (25583.5445 without restraints) Performing minimization step: 91. Total energy = 25545.3786 kcal/mol (25538.7701 without restraints) Performing minimization step: 92. Total energy = 25500.8470 kcal/mol (25494.2708 without restraints) Performing minimization step: 93. Total energy = 25456.5873 kcal/mol (25450.0430 without restraints) Performing minimization step: 94. Total energy = 25412.5955 kcal/mol (25406.0827 without restraints) Performing minimization step: 95. Total energy = 25368.8673 kcal/mol (25362.3854 without restraints) Performing minimization step: 96. Total energy = 25325.3989 kcal/mol (25318.9475 without restraints) Performing minimization step: 97. Total energy = 25282.1865 kcal/mol (25275.7652 without restraints) Performing minimization step: 98. Total energy = 25239.2262 kcal/mol (25232.8345 without restraints) Performing minimization step: 99. Total energy = 25196.5146 kcal/mol (25190.1520 without restraints) Performing minimization step: 100. Total energy = 25154.0482 kcal/mol (25147.7144 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 101. Total energy = 25111.8234 kcal/mol (25105.5180 without restraints) Performing minimization step: 102. Total energy = 25069.8367 kcal/mol (25063.5593 without restraints) Performing minimization step: 103. Total energy = 25028.0846 kcal/mol (25021.8348 without restraints) Performing minimization step: 104. Total energy = 24986.5641 kcal/mol (24980.3416 without restraints) Performing minimization step: 105. Total energy = 24945.2720 kcal/mol (24939.0762 without restraints) Performing minimization step: 106. Total energy = 24904.2048 kcal/mol (24898.0355 without restraints) Performing minimization step: 107. Total energy = 24863.3600 kcal/mol (24857.2168 without restraints) Performing minimization step: 108. Total energy = 24822.7337 kcal/mol (24816.6162 without restraints) Performing minimization step: 109. Total energy = 24782.3234 kcal/mol (24776.2313 without restraints) Performing minimization step: 110. Total energy = 24742.1262 kcal/mol (24736.0591 without restraints) Performing minimization step: 111. Total energy = 24702.1391 kcal/mol (24696.0967 without restraints) Performing minimization step: 112. Total energy = 24662.3593 kcal/mol (24656.3413 without restraints) Performing minimization step: 113. Total energy = 24622.7841 kcal/mol (24616.7902 without restraints) Performing minimization step: 114. Total energy = 24583.4110 kcal/mol (24577.4408 without restraints) Performing minimization step: 115. Total energy = 24544.2369 kcal/mol (24538.2901 without restraints) Performing minimization step: 116. Total energy = 24505.2595 kcal/mol (24499.3357 without restraints) Performing minimization step: 117. Total energy = 24466.4761 kcal/mol (24460.5753 without restraints) Performing minimization step: 118. Total energy = 24427.8845 kcal/mol (24422.0062 without restraints) Performing minimization step: 119. Total energy = 24389.4822 kcal/mol (24383.6262 without restraints) Performing minimization step: 120. Total energy = 24351.2667 kcal/mol (24345.4326 without restraints) Performing minimization step: 121. Total energy = 24313.2353 kcal/mol (24307.4229 without restraints) Performing minimization step: 122. Total energy = 24275.3862 kcal/mol (24269.5952 without restraints) Performing minimization step: 123. Total energy = 24237.7166 kcal/mol (24231.9468 without restraints) Performing minimization step: 124. Total energy = 24200.2247 kcal/mol (24194.4758 without restraints) Performing minimization step: 125. Total energy = 24162.9083 kcal/mol (24157.1800 without restraints) Performing minimization step: 126. Total energy = 24125.7649 kcal/mol (24120.0571 without restraints) Performing minimization step: 127. Total energy = 24088.7927 kcal/mol (24083.1050 without restraints) Performing minimization step: 128. Total energy = 24051.9895 kcal/mol (24046.3218 without restraints) Performing minimization step: 129. Total energy = 24015.3536 kcal/mol (24009.7056 without restraints) Performing minimization step: 130. Total energy = 23978.8828 kcal/mol (23973.2541 without restraints) Performing minimization step: 131. Total energy = 23942.5747 kcal/mol (23936.9652 without restraints) Performing minimization step: 132. Total energy = 23906.4280 kcal/mol (23900.8375 without restraints) Performing minimization step: 133. Total energy = 23870.4405 kcal/mol (23864.8689 without restraints) Performing minimization step: 134. Total energy = 23834.6103 kcal/mol (23829.0571 without restraints) Performing minimization step: 135. Total energy = 23798.9357 kcal/mol (23793.4008 without restraints) Performing minimization step: 136. Total energy = 23763.4146 kcal/mol (23757.8979 without restraints) Performing minimization step: 137. Total energy = 23728.0457 kcal/mol (23722.5468 without restraints) Performing minimization step: 138. Total energy = 23692.8273 kcal/mol (23687.3462 without restraints) Performing minimization step: 139. Total energy = 23657.7574 kcal/mol (23652.2938 without restraints) Performing minimization step: 140. Total energy = 23622.8345 kcal/mol (23617.3883 without restraints) Performing minimization step: 141. Total energy = 23588.0569 kcal/mol (23582.6277 without restraints) Performing minimization step: 142. Total energy = 23553.4230 kcal/mol (23548.0108 without restraints) Performing minimization step: 143. Total energy = 23518.9313 kcal/mol (23513.5358 without restraints) Performing minimization step: 144. Total energy = 23484.5804 kcal/mol (23479.2015 without restraints) Performing minimization step: 145. Total energy = 23450.3683 kcal/mol (23445.0059 without restraints) Performing minimization step: 146. Total energy = 23416.2939 kcal/mol (23410.9476 without restraints) Performing minimization step: 147. Total energy = 23382.3555 kcal/mol (23377.0253 without restraints) Performing minimization step: 148. Total energy = 23348.5518 kcal/mol (23343.2375 without restraints) Performing minimization step: 149. Total energy = 23314.8814 kcal/mol (23309.5828 without restraints) Performing minimization step: 150. Total energy = 23281.3427 kcal/mol (23276.0597 without restraints) Performing minimization step: 151. Total energy = 23247.9346 kcal/mol (23242.6670 without restraints) Performing minimization step: 152. Total energy = 23214.6556 kcal/mol (23209.4032 without restraints) Performing minimization step: 153. Total energy = 23181.5044 kcal/mol (23176.2671 without restraints) Performing minimization step: 154. Total energy = 23148.4796 kcal/mol (23143.2573 without restraints) Performing minimization step: 155. Total energy = 23115.5801 kcal/mol (23110.3725 without restraints) Performing minimization step: 156. Total energy = 23082.8045 kcal/mol (23077.6116 without restraints) Performing minimization step: 157. Total energy = 23050.1516 kcal/mol (23044.9732 without restraints) Performing minimization step: 158. Total energy = 23017.6197 kcal/mol (23012.4556 without restraints) Performing minimization step: 159. Total energy = 22985.2086 kcal/mol (22980.0587 without restraints) Performing minimization step: 160. Total energy = 22952.9166 kcal/mol (22947.7808 without restraints) Performing minimization step: 161. Total energy = 22920.7423 kcal/mol (22915.6204 without restraints) Performing minimization step: 162. Total energy = 22888.6850 kcal/mol (22883.5769 without restraints) Performing minimization step: 163. Total energy = 22856.7436 kcal/mol (22851.6493 without restraints) Performing minimization step: 164. Total energy = 22824.9167 kcal/mol (22819.8358 without restraints) Performing minimization step: 165. Total energy = 22793.2031 kcal/mol (22788.1355 without restraints) Performing minimization step: 166. Total energy = 22761.6020 kcal/mol (22756.5479 without restraints) Performing minimization step: 167. Total energy = 22730.1124 kcal/mol (22725.0713 without restraints) Performing minimization step: 168. Total energy = 22698.7330 kcal/mol (22693.7050 without restraints) Performing minimization step: 169. Total energy = 22667.4629 kcal/mol (22662.4479 without restraints) Performing minimization step: 170. Total energy = 22636.3012 kcal/mol (22631.2989 without restraints) Performing minimization step: 171. Total energy = 22605.2470 kcal/mol (22600.2575 without restraints) Performing minimization step: 172. Total energy = 22574.2990 kcal/mol (22569.3220 without restraints) Performing minimization step: 173. Total energy = 22543.4563 kcal/mol (22538.4917 without restraints) Performing minimization step: 174. Total energy = 22512.7180 kcal/mol (22507.7659 without restraints) Performing minimization step: 175. Total energy = 22482.0834 kcal/mol (22477.1435 without restraints) Performing minimization step: 176. Total energy = 22451.5517 kcal/mol (22446.6239 without restraints) Performing minimization step: 177. Total energy = 22421.1214 kcal/mol (22416.2057 without restraints) Performing minimization step: 178. Total energy = 22390.7919 kcal/mol (22385.8881 without restraints) Performing minimization step: 179. Total energy = 22360.5627 kcal/mol (22355.6708 without restraints) Performing minimization step: 180. Total energy = 22330.4324 kcal/mol (22325.5522 without restraints) Performing minimization step: 181. Total energy = 22300.4007 kcal/mol (22295.5321 without restraints) Performing minimization step: 182. Total energy = 22270.4664 kcal/mol (22265.6093 without restraints) Performing minimization step: 183. Total energy = 22240.6285 kcal/mol (22235.7829 without restraints) Performing minimization step: 184. Total energy = 22210.8865 kcal/mol (22206.0523 without restraints) Performing minimization step: 185. Total energy = 22181.2396 kcal/mol (22176.4166 without restraints) Performing minimization step: 186. Total energy = 22151.6869 kcal/mol (22146.8751 without restraints) Performing minimization step: 187. Total energy = 22122.2278 kcal/mol (22117.4270 without restraints) Performing minimization step: 188. Total energy = 22092.8613 kcal/mol (22088.0715 without restraints) Performing minimization step: 189. Total energy = 22063.5869 kcal/mol (22058.8080 without restraints) Performing minimization step: 190. Total energy = 22034.4036 kcal/mol (22029.6354 without restraints) Performing minimization step: 191. Total energy = 22005.3109 kcal/mol (22000.5535 without restraints) Performing minimization step: 192. Total energy = 21976.3085 kcal/mol (21971.5618 without restraints) Performing minimization step: 193. Total energy = 21947.3949 kcal/mol (21942.6587 without restraints) Performing minimization step: 194. Total energy = 21918.5697 kcal/mol (21913.8440 without restraints) Performing minimization step: 195. Total energy = 21889.8322 kcal/mol (21885.1169 without restraints) Performing minimization step: 196. Total energy = 21861.1816 kcal/mol (21856.4766 without restraints) Performing minimization step: 197. Total energy = 21832.6174 kcal/mol (21827.9227 without restraints) Performing minimization step: 198. Total energy = 21804.1391 kcal/mol (21799.4546 without restraints) Performing minimization step: 199. Total energy = 21775.7461 kcal/mol (21771.0716 without restraints) Performing minimization step: 200. Total energy = 21747.4375 kcal/mol (21742.7731 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 201. Total energy = 21719.2128 kcal/mol (21714.5583 without restraints) Performing minimization step: 202. Total energy = 21691.0716 kcal/mol (21686.4270 without restraints) Performing minimization step: 203. Total energy = 21663.0127 kcal/mol (21658.3780 without restraints) Performing minimization step: 204. Total energy = 21635.0362 kcal/mol (21630.4111 without restraints) Performing minimization step: 205. Total energy = 21607.1409 kcal/mol (21602.5255 without restraints) Performing minimization step: 206. Total energy = 21579.3265 kcal/mol (21574.7207 without restraints) Performing minimization step: 207. Total energy = 21551.5924 kcal/mol (21546.9961 without restraints) Performing minimization step: 208. Total energy = 21523.9377 kcal/mol (21519.3509 without restraints) Performing minimization step: 209. Total energy = 21496.3625 kcal/mol (21491.7851 without restraints) Performing minimization step: 210. Total energy = 21468.8656 kcal/mol (21464.2976 without restraints) Performing minimization step: 211. Total energy = 21441.4471 kcal/mol (21436.8883 without restraints) Performing minimization step: 212. Total energy = 21414.1061 kcal/mol (21409.5565 without restraints) Performing minimization step: 213. Total energy = 21386.8421 kcal/mol (21382.3017 without restraints) Performing minimization step: 214. Total energy = 21359.6547 kcal/mol (21355.1234 without restraints) Performing minimization step: 215. Total energy = 21332.5433 kcal/mol (21328.0209 without restraints) Performing minimization step: 216. Total energy = 21305.5073 kcal/mol (21300.9939 without restraints) Performing minimization step: 217. Total energy = 21278.5461 kcal/mol (21274.0417 without restraints) Performing minimization step: 218. Total energy = 21251.6596 kcal/mol (21247.1640 without restraints) Performing minimization step: 219. Total energy = 21224.8471 kcal/mol (21220.3603 without restraints) Performing minimization step: 220. Total energy = 21198.1081 kcal/mol (21193.6300 without restraints) Performing minimization step: 221. Total energy = 21171.4421 kcal/mol (21166.9727 without restraints) Performing minimization step: 222. Total energy = 21144.8487 kcal/mol (21140.3880 without restraints) Performing minimization step: 223. Total energy = 21118.3278 kcal/mol (21113.8756 without restraints) Performing minimization step: 224. Total energy = 21091.8782 kcal/mol (21087.4346 without restraints) Performing minimization step: 225. Total energy = 21065.4999 kcal/mol (21061.0647 without restraints) Performing minimization step: 226. Total energy = 21039.1924 kcal/mol (21034.7656 without restraints) Performing minimization step: 227. Total energy = 21012.9551 kcal/mol (21008.5367 without restraints) Performing minimization step: 228. Total energy = 20986.7878 kcal/mol (20982.3777 without restraints) Performing minimization step: 229. Total energy = 20960.6899 kcal/mol (20956.2881 without restraints) Performing minimization step: 230. Total energy = 20934.6611 kcal/mol (20930.2675 without restraints) Performing minimization step: 231. Total energy = 20908.7010 kcal/mol (20904.3155 without restraints) Performing minimization step: 232. Total energy = 20882.8090 kcal/mol (20878.4317 without restraints) Performing minimization step: 233. Total energy = 20856.9849 kcal/mol (20852.6157 without restraints) Performing minimization step: 234. Total energy = 20831.2285 kcal/mol (20826.8672 without restraints) Performing minimization step: 235. Total energy = 20805.5388 kcal/mol (20801.1856 without restraints) Performing minimization step: 236. Total energy = 20779.9158 kcal/mol (20775.5705 without restraints) Performing minimization step: 237. Total energy = 20754.3591 kcal/mol (20750.0216 without restraints) Performing minimization step: 238. Total energy = 20728.8682 kcal/mol (20724.5386 without restraints) Performing minimization step: 239. Total energy = 20703.4428 kcal/mol (20699.1210 without restraints) Performing minimization step: 240. Total energy = 20678.0826 kcal/mol (20673.7686 without restraints) Performing minimization step: 241. Total energy = 20652.7871 kcal/mol (20648.4808 without restraints) Performing minimization step: 242. Total energy = 20627.5561 kcal/mol (20623.2574 without restraints) Performing minimization step: 243. Total energy = 20602.3890 kcal/mol (20598.0980 without restraints) Performing minimization step: 244. Total energy = 20577.2857 kcal/mol (20573.0022 without restraints) Performing minimization step: 245. Total energy = 20552.2457 kcal/mol (20547.9697 without restraints) Performing minimization step: 246. Total energy = 20527.2686 kcal/mol (20523.0002 without restraints) Performing minimization step: 247. Total energy = 20502.3543 kcal/mol (20498.0933 without restraints) Performing minimization step: 248. Total energy = 20477.5022 kcal/mol (20473.2487 without restraints) Performing minimization step: 249. Total energy = 20452.7124 kcal/mol (20448.4663 without restraints) Performing minimization step: 250. Total energy = 20427.9836 kcal/mol (20423.7448 without restraints) Performing minimization step: 251. Total energy = 20403.3165 kcal/mol (20399.0850 without restraints) Performing minimization step: 252. Total energy = 20378.7105 kcal/mol (20374.4864 without restraints) Performing minimization step: 253. Total energy = 20354.1653 kcal/mol (20349.9483 without restraints) Performing minimization step: 254. Total energy = 20329.6805 kcal/mol (20325.4708 without restraints) Performing minimization step: 255. Total energy = 20305.2557 kcal/mol (20301.0530 without restraints) Performing minimization step: 256. Total energy = 20280.8905 kcal/mol (20276.6950 without restraints) Performing minimization step: 257. Total energy = 20256.5851 kcal/mol (20252.3967 without restraints) Performing minimization step: 258. Total energy = 20232.3387 kcal/mol (20228.1574 without restraints) Performing minimization step: 259. Total energy = 20208.1511 kcal/mol (20203.9768 without restraints) Performing minimization step: 260. Total energy = 20184.0223 kcal/mol (20179.8549 without restraints) Performing minimization step: 261. Total energy = 20159.9518 kcal/mol (20155.7914 without restraints) Performing minimization step: 262. Total energy = 20135.9389 kcal/mol (20131.7855 without restraints) Performing minimization step: 263. Total energy = 20111.9839 kcal/mol (20107.8373 without restraints) Performing minimization step: 264. Total energy = 20088.0862 kcal/mol (20083.9465 without restraints) Performing minimization step: 265. Total energy = 20064.2458 kcal/mol (20060.1130 without restraints) Performing minimization step: 266. Total energy = 20040.4623 kcal/mol (20036.3361 without restraints) Performing minimization step: 267. Total energy = 20016.7352 kcal/mol (20012.6159 without restraints) Performing minimization step: 268. Total energy = 19993.0646 kcal/mol (19988.9520 without restraints) Performing minimization step: 269. Total energy = 19969.4500 kcal/mol (19965.3440 without restraints) Performing minimization step: 270. Total energy = 19945.8912 kcal/mol (19941.7919 without restraints) Performing minimization step: 271. Total energy = 19922.3878 kcal/mol (19918.2950 without restraints) Performing minimization step: 272. Total energy = 19898.9398 kcal/mol (19894.8537 without restraints) Performing minimization step: 273. Total energy = 19875.5471 kcal/mol (19871.4676 without restraints) Performing minimization step: 274. Total energy = 19852.2090 kcal/mol (19848.1360 without restraints) Performing minimization step: 275. Total energy = 19828.9250 kcal/mol (19824.8586 without restraints) Performing minimization step: 276. Total energy = 19805.6959 kcal/mol (19801.6360 without restraints) Performing minimization step: 277. Total energy = 19782.5207 kcal/mol (19778.4672 without restraints) Performing minimization step: 278. Total energy = 19759.3993 kcal/mol (19755.3523 without restraints) Performing minimization step: 279. Total energy = 19736.3315 kcal/mol (19732.2909 without restraints) Performing minimization step: 280. Total energy = 19713.3166 kcal/mol (19709.2823 without restraints) Performing minimization step: 281. Total energy = 19690.3553 kcal/mol (19686.3273 without restraints) Performing minimization step: 282. Total energy = 19667.4468 kcal/mol (19663.4252 without restraints) Performing minimization step: 283. Total energy = 19644.5912 kcal/mol (19640.5759 without restraints) Performing minimization step: 284. Total energy = 19621.7879 kcal/mol (19617.7788 without restraints) Performing minimization step: 285. Total energy = 19599.0369 kcal/mol (19595.0341 without restraints) Performing minimization step: 286. Total energy = 19576.3377 kcal/mol (19572.3411 without restraints) Performing minimization step: 287. Total energy = 19553.6903 kcal/mol (19549.6999 without restraints) Performing minimization step: 288. Total energy = 19531.0944 kcal/mol (19527.1101 without restraints) Performing minimization step: 289. Total energy = 19508.5498 kcal/mol (19504.5717 without restraints) Performing minimization step: 290. Total energy = 19486.0563 kcal/mol (19482.0843 without restraints) Performing minimization step: 291. Total energy = 19463.6136 kcal/mol (19459.6476 without restraints) Performing minimization step: 292. Total energy = 19441.2216 kcal/mol (19437.2617 without restraints) Performing minimization step: 293. Total energy = 19418.8802 kcal/mol (19414.9264 without restraints) Performing minimization step: 294. Total energy = 19396.5891 kcal/mol (19392.6413 without restraints) Performing minimization step: 295. Total energy = 19374.3481 kcal/mol (19370.4064 without restraints) Performing minimization step: 296. Total energy = 19352.1571 kcal/mol (19348.2212 without restraints) Performing minimization step: 297. Total energy = 19330.0160 kcal/mol (19326.0864 without restraints) Performing minimization step: 298. Total energy = 19307.9243 kcal/mol (19304.0003 without restraints) Performing minimization step: 299. Total energy = 19285.8817 kcal/mol (19281.9637 without restraints) Performing minimization step: 300. Total energy = 19263.8882 kcal/mol (19259.9761 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 301. Total energy = 19241.9436 kcal/mol (19238.0372 without restraints) Performing minimization step: 302. Total energy = 19220.0475 kcal/mol (19216.1470 without restraints) Performing minimization step: 303. Total energy = 19198.2000 kcal/mol (19194.3053 without restraints) Performing minimization step: 304. Total energy = 19176.4008 kcal/mol (19172.5119 without restraints) Performing minimization step: 305. Total energy = 19154.6497 kcal/mol (19150.7665 without restraints) Performing minimization step: 306. Total energy = 19132.9466 kcal/mol (19129.0692 without restraints) Performing minimization step: 307. Total energy = 19111.2913 kcal/mol (19107.4196 without restraints) Performing minimization step: 308. Total energy = 19089.6832 kcal/mol (19085.8171 without restraints) Performing minimization step: 309. Total energy = 19068.1228 kcal/mol (19064.2625 without restraints) Performing minimization step: 310. Total energy = 19046.6099 kcal/mol (19042.7553 without restraints) Performing minimization step: 311. Total energy = 19025.1440 kcal/mol (19021.2949 without restraints) Performing minimization step: 312. Total energy = 19003.7252 kcal/mol (18999.8817 without restraints) Performing minimization step: 313. Total energy = 18982.3528 kcal/mol (18978.5150 without restraints) Performing minimization step: 314. Total energy = 18961.0270 kcal/mol (18957.1948 without restraints) Performing minimization step: 315. Total energy = 18939.7476 kcal/mol (18935.9209 without restraints) Performing minimization step: 316. Total energy = 18918.5144 kcal/mol (18914.6932 without restraints) Performing minimization step: 317. Total energy = 18897.3272 kcal/mol (18893.5116 without restraints) Performing minimization step: 318. Total energy = 18876.1860 kcal/mol (18872.3758 without restraints) Performing minimization step: 319. Total energy = 18855.0907 kcal/mol (18851.2860 without restraints) Performing minimization step: 320. Total energy = 18834.0409 kcal/mol (18830.2417 without restraints) Performing minimization step: 321. Total energy = 18813.0363 kcal/mol (18809.2425 without restraints) Performing minimization step: 322. Total energy = 18792.0769 kcal/mol (18788.2886 without restraints) Performing minimization step: 323. Total energy = 18771.1626 kcal/mol (18767.3797 without restraints) Performing minimization step: 324. Total energy = 18750.2933 kcal/mol (18746.5157 without restraints) Performing minimization step: 325. Total energy = 18729.4687 kcal/mol (18725.6965 without restraints) Performing minimization step: 326. Total energy = 18708.6885 kcal/mol (18704.9217 without restraints) Performing minimization step: 327. Total energy = 18687.9530 kcal/mol (18684.1915 without restraints) Performing minimization step: 328. Total energy = 18667.2617 kcal/mol (18663.5055 without restraints) Performing minimization step: 329. Total energy = 18646.6149 kcal/mol (18642.8642 without restraints) Performing minimization step: 330. Total energy = 18626.0118 kcal/mol (18622.2662 without restraints) Performing minimization step: 331. Total energy = 18605.4527 kcal/mol (18601.7123 without restraints) Performing minimization step: 332. Total energy = 18584.9372 kcal/mol (18581.2020 without restraints) Performing minimization step: 333. Total energy = 18564.4654 kcal/mol (18560.7355 without restraints) Performing minimization step: 334. Total energy = 18544.0369 kcal/mol (18540.3122 without restraints) Performing minimization step: 335. Total energy = 18523.6516 kcal/mol (18519.9322 without restraints) Performing minimization step: 336. Total energy = 18503.3096 kcal/mol (18499.5952 without restraints) Performing minimization step: 337. Total energy = 18483.0105 kcal/mol (18479.3013 without restraints) Performing minimization step: 338. Total energy = 18462.7544 kcal/mol (18459.0504 without restraints) Performing minimization step: 339. Total energy = 18442.5409 kcal/mol (18438.8420 without restraints) Performing minimization step: 340. Total energy = 18422.3700 kcal/mol (18418.6762 without restraints) Performing minimization step: 341. Total energy = 18402.2414 kcal/mol (18398.5527 without restraints) Performing minimization step: 342. Total energy = 18382.1552 kcal/mol (18378.4716 without restraints) Performing minimization step: 343. Total energy = 18362.1113 kcal/mol (18358.4330 without restraints) Performing minimization step: 344. Total energy = 18342.1095 kcal/mol (18338.4360 without restraints) Performing minimization step: 345. Total energy = 18322.1494 kcal/mol (18318.4809 without restraints) Performing minimization step: 346. Total energy = 18302.2310 kcal/mol (18298.5675 without restraints) Performing minimization step: 347. Total energy = 18282.3542 kcal/mol (18278.6957 without restraints) Performing minimization step: 348. Total energy = 18262.5191 kcal/mol (18258.8656 without restraints) Performing minimization step: 349. Total energy = 18242.7252 kcal/mol (18239.0767 without restraints) Performing minimization step: 350. Total energy = 18222.9726 kcal/mol (18219.3291 without restraints) Performing minimization step: 351. Total energy = 18203.2611 kcal/mol (18199.6225 without restraints) Performing minimization step: 352. Total energy = 18183.5905 kcal/mol (18179.9568 without restraints) Performing minimization step: 353. Total energy = 18163.9608 kcal/mol (18160.3320 without restraints) Performing minimization step: 354. Total energy = 18144.3719 kcal/mol (18140.7480 without restraints) Performing minimization step: 355. Total energy = 18124.8236 kcal/mol (18121.2045 without restraints) Performing minimization step: 356. Total energy = 18105.3157 kcal/mol (18101.7016 without restraints) Performing minimization step: 357. Total energy = 18085.8483 kcal/mol (18082.2391 without restraints) Performing minimization step: 358. Total energy = 18066.4212 kcal/mol (18062.8167 without restraints) Performing minimization step: 359. Total energy = 18047.0341 kcal/mol (18043.4344 without restraints) Performing minimization step: 360. Total energy = 18027.6870 kcal/mol (18024.0921 without restraints) Performing minimization step: 361. Total energy = 18008.3797 kcal/mol (18004.7897 without restraints) Performing minimization step: 362. Total energy = 17989.1122 kcal/mol (17985.5270 without restraints) Performing minimization step: 363. Total energy = 17969.8844 kcal/mol (17966.3039 without restraints) Performing minimization step: 364. Total energy = 17950.6961 kcal/mol (17947.1203 without restraints) Performing minimization step: 365. Total energy = 17931.5472 kcal/mol (17927.9762 without restraints) Performing minimization step: 366. Total energy = 17912.4376 kcal/mol (17908.8713 without restraints) Performing minimization step: 367. Total energy = 17893.3672 kcal/mol (17889.8056 without restraints) Performing minimization step: 368. Total energy = 17874.3359 kcal/mol (17870.7790 without restraints) Performing minimization step: 369. Total energy = 17855.3435 kcal/mol (17851.7913 without restraints) Performing minimization step: 370. Total energy = 17836.3895 kcal/mol (17832.8420 without restraints) Performing minimization step: 371. Total energy = 17817.4747 kcal/mol (17813.9318 without restraints) Performing minimization step: 372. Total energy = 17798.5987 kcal/mol (17795.0605 without restraints) Performing minimization step: 373. Total energy = 17779.7610 kcal/mol (17776.2274 without restraints) Performing minimization step: 374. Total energy = 17760.9616 kcal/mol (17757.4327 without restraints) Performing minimization step: 375. Total energy = 17742.2007 kcal/mol (17738.6763 without restraints) Performing minimization step: 376. Total energy = 17723.4778 kcal/mol (17719.9580 without restraints) Performing minimization step: 377. Total energy = 17704.7929 kcal/mol (17701.2777 without restraints) Performing minimization step: 378. Total energy = 17686.1461 kcal/mol (17682.6354 without restraints) Performing minimization step: 379. Total energy = 17667.5371 kcal/mol (17664.0310 without restraints) Performing minimization step: 380. Total energy = 17648.9658 kcal/mol (17645.4643 without restraints) Performing minimization step: 381. Total energy = 17630.4323 kcal/mol (17626.9353 without restraints) Performing minimization step: 382. Total energy = 17611.9362 kcal/mol (17608.4437 without restraints) Performing minimization step: 383. Total energy = 17593.4775 kcal/mol (17589.9895 without restraints) Performing minimization step: 384. Total energy = 17575.0563 kcal/mol (17571.5729 without restraints) Performing minimization step: 385. Total energy = 17556.6723 kcal/mol (17553.1933 without restraints) Performing minimization step: 386. Total energy = 17538.3251 kcal/mol (17534.8506 without restraints) Performing minimization step: 387. Total energy = 17520.0151 kcal/mol (17516.5450 without restraints) Performing minimization step: 388. Total energy = 17501.7421 kcal/mol (17498.2765 without restraints) Performing minimization step: 389. Total energy = 17483.5058 kcal/mol (17480.0444 without restraints) Performing minimization step: 390. Total energy = 17465.3060 kcal/mol (17461.8492 without restraints) Performing minimization step: 391. Total energy = 17447.1431 kcal/mol (17443.6907 without restraints) Performing minimization step: 392. Total energy = 17429.0166 kcal/mol (17425.5685 without restraints) Performing minimization step: 393. Total energy = 17410.9265 kcal/mol (17407.4829 without restraints) Performing minimization step: 394. Total energy = 17392.8730 kcal/mol (17389.4338 without restraints) Performing minimization step: 395. Total energy = 17374.8558 kcal/mol (17371.4209 without restraints) Performing minimization step: 396. Total energy = 17356.8748 kcal/mol (17353.4442 without restraints) Performing minimization step: 397. Total energy = 17338.9295 kcal/mol (17335.5033 without restraints) Performing minimization step: 398. Total energy = 17321.0200 kcal/mol (17317.5980 without restraints) Performing minimization step: 399. Total energy = 17303.1463 kcal/mol (17299.7288 without restraints) Performing minimization step: 400. Total energy = 17285.3088 kcal/mol (17281.8955 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 401. Total energy = 17267.5066 kcal/mol (17264.0976 without restraints) Performing minimization step: 402. Total energy = 17249.7399 kcal/mol (17246.3353 without restraints) Performing minimization step: 403. Total energy = 17232.0088 kcal/mol (17228.6084 without restraints) Performing minimization step: 404. Total energy = 17214.3127 kcal/mol (17210.9165 without restraints) Performing minimization step: 405. Total energy = 17196.6521 kcal/mol (17193.2602 without restraints) Performing minimization step: 406. Total energy = 17179.0267 kcal/mol (17175.6391 without restraints) Performing minimization step: 407. Total energy = 17161.4364 kcal/mol (17158.0530 without restraints) Performing minimization step: 408. Total energy = 17143.8810 kcal/mol (17140.5018 without restraints) Performing minimization step: 409. Total energy = 17126.3607 kcal/mol (17122.9858 without restraints) Performing minimization step: 410. Total energy = 17108.8752 kcal/mol (17105.5043 without restraints) Performing minimization step: 411. Total energy = 17091.4243 kcal/mol (17088.0576 without restraints) Performing minimization step: 412. Total energy = 17074.0079 kcal/mol (17070.6455 without restraints) Performing minimization step: 413. Total energy = 17056.6261 kcal/mol (17053.2678 without restraints) Performing minimization step: 414. Total energy = 17039.2788 kcal/mol (17035.9247 without restraints) Performing minimization step: 415. Total energy = 17021.9660 kcal/mol (17018.6160 without restraints) Performing minimization step: 416. Total energy = 17004.6873 kcal/mol (17001.3414 without restraints) Performing minimization step: 417. Total energy = 16987.4428 kcal/mol (16984.1010 without restraints) Performing minimization step: 418. Total energy = 16970.2324 kcal/mol (16966.8948 without restraints) Performing minimization step: 419. Total energy = 16953.0560 kcal/mol (16949.7225 without restraints) Performing minimization step: 420. Total energy = 16935.9135 kcal/mol (16932.5841 without restraints) Performing minimization step: 421. Total energy = 16918.8049 kcal/mol (16915.4795 without restraints) Performing minimization step: 422. Total energy = 16901.7302 kcal/mol (16898.4089 without restraints) Performing minimization step: 423. Total energy = 16884.6889 kcal/mol (16881.3717 without restraints) Performing minimization step: 424. Total energy = 16867.6815 kcal/mol (16864.3683 without restraints) Performing minimization step: 425. Total energy = 16850.7073 kcal/mol (16847.3981 without restraints) Performing minimization step: 426. Total energy = 16833.7665 kcal/mol (16830.4614 without restraints) Performing minimization step: 427. Total energy = 16816.8590 kcal/mol (16813.5579 without restraints) Performing minimization step: 428. Total energy = 16799.9848 kcal/mol (16796.6877 without restraints) Performing minimization step: 429. Total energy = 16783.1439 kcal/mol (16779.8508 without restraints) Performing minimization step: 430. Total energy = 16766.3356 kcal/mol (16763.0465 without restraints) Performing minimization step: 431. Total energy = 16749.5606 kcal/mol (16746.2755 without restraints) Performing minimization step: 432. Total energy = 16732.8184 kcal/mol (16729.5373 without restraints) Performing minimization step: 433. Total energy = 16716.1092 kcal/mol (16712.8321 without restraints) Performing minimization step: 434. Total energy = 16699.4327 kcal/mol (16696.1595 without restraints) Performing minimization step: 435. Total energy = 16682.7887 kcal/mol (16679.5194 without restraints) Performing minimization step: 436. Total energy = 16666.1774 kcal/mol (16662.9120 without restraints) Performing minimization step: 437. Total energy = 16649.5985 kcal/mol (16646.3371 without restraints) Performing minimization step: 438. Total energy = 16633.0521 kcal/mol (16629.7945 without restraints) Performing minimization step: 439. Total energy = 16616.5380 kcal/mol (16613.2843 without restraints) Performing minimization step: 440. Total energy = 16600.0564 kcal/mol (16596.8067 without restraints) Performing minimization step: 441. Total energy = 16583.6066 kcal/mol (16580.3607 without restraints) Performing minimization step: 442. Total energy = 16567.1889 kcal/mol (16563.9469 without restraints) Performing minimization step: 443. Total energy = 16550.8032 kcal/mol (16547.5651 without restraints) Performing minimization step: 444. Total energy = 16534.4496 kcal/mol (16531.2153 without restraints) Performing minimization step: 445. Total energy = 16518.1278 kcal/mol (16514.8973 without restraints) Performing minimization step: 446. Total energy = 16501.8377 kcal/mol (16498.6111 without restraints) Performing minimization step: 447. Total energy = 16485.5793 kcal/mol (16482.3565 without restraints) Performing minimization step: 448. Total energy = 16469.3525 kcal/mol (16466.1336 without restraints) Performing minimization step: 449. Total energy = 16453.1572 kcal/mol (16449.9419 without restraints) Performing minimization step: 450. Total energy = 16436.9933 kcal/mol (16433.7820 without restraints) Performing minimization step: 451. Total energy = 16420.8609 kcal/mol (16417.6534 without restraints) Performing minimization step: 452. Total energy = 16404.7598 kcal/mol (16401.5561 without restraints) Performing minimization step: 453. Total energy = 16388.6902 kcal/mol (16385.4903 without restraints) Performing minimization step: 454. Total energy = 16372.6516 kcal/mol (16369.4553 without restraints) Performing minimization step: 455. Total energy = 16356.6439 kcal/mol (16353.4515 without restraints) Performing minimization step: 456. Total energy = 16340.6674 kcal/mol (16337.4787 without restraints) Performing minimization step: 457. Total energy = 16324.7217 kcal/mol (16321.5367 without restraints) Performing minimization step: 458. Total energy = 16308.8069 kcal/mol (16305.6256 without restraints) Performing minimization step: 459. Total energy = 16292.9229 kcal/mol (16289.7453 without restraints) Performing minimization step: 460. Total energy = 16277.0695 kcal/mol (16273.8956 without restraints) Performing minimization step: 461. Total energy = 16261.2467 kcal/mol (16258.0766 without restraints) Performing minimization step: 462. Total energy = 16245.4548 kcal/mol (16242.2883 without restraints) Performing minimization step: 463. Total energy = 16229.6931 kcal/mol (16226.5303 without restraints) Performing minimization step: 464. Total energy = 16213.9618 kcal/mol (16210.8027 without restraints) Performing minimization step: 465. Total energy = 16198.2608 kcal/mol (16195.1054 without restraints) Performing minimization step: 466. Total energy = 16182.5899 kcal/mol (16179.4381 without restraints) Performing minimization step: 467. Total energy = 16166.9493 kcal/mol (16163.8012 without restraints) Performing minimization step: 468. Total energy = 16151.3389 kcal/mol (16148.1944 without restraints) Performing minimization step: 469. Total energy = 16135.7585 kcal/mol (16132.6177 without restraints) Performing minimization step: 470. Total energy = 16120.2081 kcal/mol (16117.0709 without restraints) Performing minimization step: 471. Total energy = 16104.6876 kcal/mol (16101.5540 without restraints) Performing minimization step: 472. Total energy = 16089.1969 kcal/mol (16086.0669 without restraints) Performing minimization step: 473. Total energy = 16073.7359 kcal/mol (16070.6096 without restraints) Performing minimization step: 474. Total energy = 16058.3047 kcal/mol (16055.1819 without restraints) Performing minimization step: 475. Total energy = 16042.9030 kcal/mol (16039.7837 without restraints) Performing minimization step: 476. Total energy = 16027.5308 kcal/mol (16024.4151 without restraints) Performing minimization step: 477. Total energy = 16012.1881 kcal/mol (16009.0760 without restraints) Performing minimization step: 478. Total energy = 15996.8748 kcal/mol (15993.7663 without restraints) Performing minimization step: 479. Total energy = 15981.5908 kcal/mol (15978.4858 without restraints) Performing minimization step: 480. Total energy = 15966.3361 kcal/mol (15963.2346 without restraints) Performing minimization step: 481. Total energy = 15951.1105 kcal/mol (15948.0126 without restraints) Performing minimization step: 482. Total energy = 15935.9144 kcal/mol (15932.8200 without restraints) Performing minimization step: 483. Total energy = 15920.7470 kcal/mol (15917.6562 without restraints) Performing minimization step: 484. Total energy = 15905.6086 kcal/mol (15902.5212 without restraints) Performing minimization step: 485. Total energy = 15890.4993 kcal/mol (15887.4154 without restraints) Performing minimization step: 486. Total energy = 15875.4186 kcal/mol (15872.3382 without restraints) Performing minimization step: 487. Total energy = 15860.3667 kcal/mol (15857.2898 without restraints) Performing minimization step: 488. Total energy = 15845.3432 kcal/mol (15842.2697 without restraints) Performing minimization step: 489. Total energy = 15830.3485 kcal/mol (15827.2786 without restraints) Performing minimization step: 490. Total energy = 15815.3825 kcal/mol (15812.3160 without restraints) Performing minimization step: 491. Total energy = 15800.4451 kcal/mol (15797.3820 without restraints) Performing minimization step: 492. Total energy = 15785.5359 kcal/mol (15782.4763 without restraints) Performing minimization step: 493. Total energy = 15770.6549 kcal/mol (15767.5986 without restraints) Performing minimization step: 494. Total energy = 15755.8020 kcal/mol (15752.7492 without restraints) Performing minimization step: 495. Total energy = 15740.9776 kcal/mol (15737.9283 without restraints) Performing minimization step: 496. Total energy = 15726.1814 kcal/mol (15723.1355 without restraints) Performing minimization step: 497. Total energy = 15711.4134 kcal/mol (15708.3707 without restraints) Performing minimization step: 498. Total energy = 15696.6736 kcal/mol (15693.6345 without restraints) Performing minimization step: 499. Total energy = 15681.9613 kcal/mol (15678.9255 without restraints) Performing minimization step: 500. Total energy = 15667.2770 kcal/mol (15664.2446 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 501. Total energy = 15652.6207 kcal/mol (15649.5917 without restraints) Performing minimization step: 502. Total energy = 15637.9922 kcal/mol (15634.9665 without restraints) Performing minimization step: 503. Total energy = 15623.3911 kcal/mol (15620.3688 without restraints) Performing minimization step: 504. Total energy = 15608.8176 kcal/mol (15605.7987 without restraints) Performing minimization step: 505. Total energy = 15594.2717 kcal/mol (15591.2561 without restraints) Performing minimization step: 506. Total energy = 15579.7532 kcal/mol (15576.7409 without restraints) Performing minimization step: 507. Total energy = 15565.2622 kcal/mol (15562.2532 without restraints) Performing minimization step: 508. Total energy = 15550.7986 kcal/mol (15547.7928 without restraints) Performing minimization step: 509. Total energy = 15536.3621 kcal/mol (15533.3597 without restraints) Performing minimization step: 510. Total energy = 15521.9529 kcal/mol (15518.9538 without restraints) Performing minimization step: 511. Total energy = 15507.5706 kcal/mol (15504.5749 without restraints) Performing minimization step: 512. Total energy = 15493.2156 kcal/mol (15490.2230 without restraints) Performing minimization step: 513. Total energy = 15478.8875 kcal/mol (15475.8983 without restraints) Performing minimization step: 514. Total energy = 15464.5865 kcal/mol (15461.6005 without restraints) Performing minimization step: 515. Total energy = 15450.3124 kcal/mol (15447.3297 without restraints) Performing minimization step: 516. Total energy = 15436.0651 kcal/mol (15433.0856 without restraints) Performing minimization step: 517. Total energy = 15421.8446 kcal/mol (15418.8683 without restraints) Performing minimization step: 518. Total energy = 15407.6507 kcal/mol (15404.6777 without restraints) Performing minimization step: 519. Total energy = 15393.4834 kcal/mol (15390.5137 without restraints) Performing minimization step: 520. Total energy = 15379.3428 kcal/mol (15376.3762 without restraints) Performing minimization step: 521. Total energy = 15365.2286 kcal/mol (15362.2653 without restraints) Performing minimization step: 522. Total energy = 15351.1409 kcal/mol (15348.1808 without restraints) Performing minimization step: 523. Total energy = 15337.0797 kcal/mol (15334.1229 without restraints) Performing minimization step: 524. Total energy = 15323.0447 kcal/mol (15320.0910 without restraints) Performing minimization step: 525. Total energy = 15309.0360 kcal/mol (15306.0854 without restraints) Performing minimization step: 526. Total energy = 15295.0534 kcal/mol (15292.1060 without restraints) Performing minimization step: 527. Total energy = 15281.0969 kcal/mol (15278.1527 without restraints) Performing minimization step: 528. Total energy = 15267.1665 kcal/mol (15264.2255 without restraints) Performing minimization step: 529. Total energy = 15253.2621 kcal/mol (15250.3242 without restraints) Performing minimization step: 530. Total energy = 15239.3838 kcal/mol (15236.4491 without restraints) Performing minimization step: 531. Total energy = 15225.5310 kcal/mol (15222.5994 without restraints) Performing minimization step: 532. Total energy = 15211.7042 kcal/mol (15208.7757 without restraints) Performing minimization step: 533. Total energy = 15197.9031 kcal/mol (15194.9778 without restraints) Performing minimization step: 534. Total energy = 15184.1281 kcal/mol (15181.2059 without restraints) Performing minimization step: 535. Total energy = 15170.3784 kcal/mol (15167.4593 without restraints) Performing minimization step: 536. Total energy = 15156.6542 kcal/mol (15153.7382 without restraints) Performing minimization step: 537. Total energy = 15142.9555 kcal/mol (15140.0426 without restraints) Performing minimization step: 538. Total energy = 15129.2822 kcal/mol (15126.3724 without restraints) Performing minimization step: 539. Total energy = 15115.6343 kcal/mol (15112.7276 without restraints) Performing minimization step: 540. Total energy = 15102.0117 kcal/mol (15099.1081 without restraints) Performing minimization step: 541. Total energy = 15088.4144 kcal/mol (15085.5138 without restraints) Performing minimization step: 542. Total energy = 15074.8423 kcal/mol (15071.9447 without restraints) Performing minimization step: 543. Total energy = 15061.2953 kcal/mol (15058.4008 without restraints) Performing minimization step: 544. Total energy = 15047.7731 kcal/mol (15044.8817 without restraints) Performing minimization step: 545. Total energy = 15034.2762 kcal/mol (15031.3878 without restraints) Performing minimization step: 546. Total energy = 15020.8042 kcal/mol (15017.9188 without restraints) Performing minimization step: 547. Total energy = 15007.3571 kcal/mol (15004.4747 without restraints) Performing minimization step: 548. Total energy = 14993.9350 kcal/mol (14991.0557 without restraints) Performing minimization step: 549. Total energy = 14980.5376 kcal/mol (14977.6612 without restraints) Performing minimization step: 550. Total energy = 14967.1649 kcal/mol (14964.2915 without restraints) Performing minimization step: 551. Total energy = 14953.8166 kcal/mol (14950.9462 without restraints) Performing minimization step: 552. Total energy = 14940.4929 kcal/mol (14937.6256 without restraints) Performing minimization step: 553. Total energy = 14927.1936 kcal/mol (14924.3292 without restraints) Performing minimization step: 554. Total energy = 14913.9190 kcal/mol (14911.0576 without restraints) Performing minimization step: 555. Total energy = 14900.6688 kcal/mol (14897.8103 without restraints) Performing minimization step: 556. Total energy = 14887.4429 kcal/mol (14884.5874 without restraints) Performing minimization step: 557. Total energy = 14874.2413 kcal/mol (14871.3888 without restraints) Performing minimization step: 558. Total energy = 14861.0640 kcal/mol (14858.2144 without restraints) Performing minimization step: 559. Total energy = 14847.9106 kcal/mol (14845.0639 without restraints) Performing minimization step: 560. Total energy = 14834.7815 kcal/mol (14831.9378 without restraints) Performing minimization step: 561. Total energy = 14821.6765 kcal/mol (14818.8357 without restraints) Performing minimization step: 562. Total energy = 14808.5954 kcal/mol (14805.7575 without restraints) Performing minimization step: 563. Total energy = 14795.5383 kcal/mol (14792.7034 without restraints) Performing minimization step: 564. Total energy = 14782.5051 kcal/mol (14779.6730 without restraints) Performing minimization step: 565. Total energy = 14769.4956 kcal/mol (14766.6664 without restraints) Performing minimization step: 566. Total energy = 14756.5100 kcal/mol (14753.6837 without restraints) Performing minimization step: 567. Total energy = 14743.5480 kcal/mol (14740.7246 without restraints) Performing minimization step: 568. Total energy = 14730.6097 kcal/mol (14727.7892 without restraints) Performing minimization step: 569. Total energy = 14717.6950 kcal/mol (14714.8774 without restraints) Performing minimization step: 570. Total energy = 14704.8036 kcal/mol (14701.9888 without restraints) Performing minimization step: 571. Total energy = 14691.9362 kcal/mol (14689.1245 without restraints) Performing minimization step: 572. Total energy = 14679.0918 kcal/mol (14676.2827 without restraints) Performing minimization step: 573. Total energy = 14666.2708 kcal/mol (14663.4645 without restraints) Performing minimization step: 574. Total energy = 14653.4730 kcal/mol (14650.6695 without restraints) Performing minimization step: 575. Total energy = 14640.6985 kcal/mol (14637.8978 without restraints) Performing minimization step: 576. Total energy = 14627.9471 kcal/mol (14625.1493 without restraints) Performing minimization step: 577. Total energy = 14615.2189 kcal/mol (14612.4239 without restraints) Performing minimization step: 578. Total energy = 14602.5139 kcal/mol (14599.7218 without restraints) Performing minimization step: 579. Total energy = 14589.8318 kcal/mol (14587.0424 without restraints) Performing minimization step: 580. Total energy = 14577.1725 kcal/mol (14574.3859 without restraints) Performing minimization step: 581. Total energy = 14564.5362 kcal/mol (14561.7524 without restraints) Performing minimization step: 582. Total energy = 14551.9226 kcal/mol (14549.1416 without restraints) Performing minimization step: 583. Total energy = 14539.3319 kcal/mol (14536.5536 without restraints) Performing minimization step: 584. Total energy = 14526.7638 kcal/mol (14523.9883 without restraints) Performing minimization step: 585. Total energy = 14514.2184 kcal/mol (14511.4457 without restraints) Performing minimization step: 586. Total energy = 14501.6957 kcal/mol (14498.9257 without restraints) Performing minimization step: 587. Total energy = 14489.1952 kcal/mol (14486.4280 without restraints) Performing minimization step: 588. Total energy = 14476.7175 kcal/mol (14473.9530 without restraints) Performing minimization step: 589. Total energy = 14464.2621 kcal/mol (14461.5004 without restraints) Performing minimization step: 590. Total energy = 14451.8292 kcal/mol (14449.0702 without restraints) Performing minimization step: 591. Total energy = 14439.4185 kcal/mol (14436.6622 without restraints) Performing minimization step: 592. Total energy = 14427.0302 kcal/mol (14424.2765 without restraints) Performing minimization step: 593. Total energy = 14414.6640 kcal/mol (14411.9131 without restraints) Performing minimization step: 594. Total energy = 14402.3200 kcal/mol (14399.5718 without restraints) Performing minimization step: 595. Total energy = 14389.9981 kcal/mol (14387.2526 without restraints) Performing minimization step: 596. Total energy = 14377.6980 kcal/mol (14374.9552 without restraints) Performing minimization step: 597. Total energy = 14365.4200 kcal/mol (14362.6799 without restraints) Performing minimization step: 598. Total energy = 14353.1641 kcal/mol (14350.4266 without restraints) Performing minimization step: 599. Total energy = 14340.9300 kcal/mol (14338.1952 without restraints) Performing minimization step: 600. Total energy = 14328.7178 kcal/mol (14325.9857 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 601. Total energy = 14316.5274 kcal/mol (14313.7979 without restraints) Performing minimization step: 602. Total energy = 14304.3586 kcal/mol (14301.6317 without restraints) Performing minimization step: 603. Total energy = 14292.2114 kcal/mol (14289.4872 without restraints) Performing minimization step: 604. Total energy = 14280.0859 kcal/mol (14277.3643 without restraints) Performing minimization step: 605. Total energy = 14267.9819 kcal/mol (14265.2629 without restraints) Performing minimization step: 606. Total energy = 14255.8993 kcal/mol (14253.1830 without restraints) Performing minimization step: 607. Total energy = 14243.8382 kcal/mol (14241.1245 without restraints) Performing minimization step: 608. Total energy = 14231.7985 kcal/mol (14229.0874 without restraints) Performing minimization step: 609. Total energy = 14219.7801 kcal/mol (14217.0716 without restraints) Performing minimization step: 610. Total energy = 14207.7826 kcal/mol (14205.0767 without restraints) Performing minimization step: 611. Total energy = 14195.8067 kcal/mol (14193.1033 without restraints) Performing minimization step: 612. Total energy = 14183.8519 kcal/mol (14181.1512 without restraints) Performing minimization step: 613. Total energy = 14171.9183 kcal/mol (14169.2202 without restraints) Performing minimization step: 614. Total energy = 14160.0059 kcal/mol (14157.3103 without restraints) Performing minimization step: 615. Total energy = 14148.1145 kcal/mol (14145.4215 without restraints) Performing minimization step: 616. Total energy = 14136.2440 kcal/mol (14133.5535 without restraints) Performing minimization step: 617. Total energy = 14124.3942 kcal/mol (14121.7063 without restraints) Performing minimization step: 618. Total energy = 14112.5653 kcal/mol (14109.8799 without restraints) Performing minimization step: 619. Total energy = 14100.7575 kcal/mol (14098.0746 without restraints) Performing minimization step: 620. Total energy = 14088.9701 kcal/mol (14086.2897 without restraints) Performing minimization step: 621. Total energy = 14077.2035 kcal/mol (14074.5257 without restraints) Performing minimization step: 622. Total energy = 14065.4574 kcal/mol (14062.7821 without restraints) Performing minimization step: 623. Total energy = 14053.7319 kcal/mol (14051.0591 without restraints) Performing minimization step: 624. Total energy = 14042.0269 kcal/mol (14039.3566 without restraints) Performing minimization step: 625. Total energy = 14030.3423 kcal/mol (14027.6746 without restraints) Performing minimization step: 626. Total energy = 14018.6782 kcal/mol (14016.0129 without restraints) Performing minimization step: 627. Total energy = 14007.0344 kcal/mol (14004.3716 without restraints) Performing minimization step: 628. Total energy = 13995.4110 kcal/mol (13992.7506 without restraints) Performing minimization step: 629. Total energy = 13983.8078 kcal/mol (13981.1499 without restraints) Performing minimization step: 630. Total energy = 13972.2247 kcal/mol (13969.5694 without restraints) Performing minimization step: 631. Total energy = 13960.6622 kcal/mol (13958.0093 without restraints) Performing minimization step: 632. Total energy = 13949.1196 kcal/mol (13946.4692 without restraints) Performing minimization step: 633. Total energy = 13937.5969 kcal/mol (13934.9489 without restraints) Performing minimization step: 634. Total energy = 13926.0947 kcal/mol (13923.4491 without restraints) Performing minimization step: 635. Total energy = 13914.6119 kcal/mol (13911.9687 without restraints) Performing minimization step: 636. Total energy = 13903.1491 kcal/mol (13900.5084 without restraints) Performing minimization step: 637. Total energy = 13891.7063 kcal/mol (13889.0680 without restraints) Performing minimization step: 638. Total energy = 13880.2830 kcal/mol (13877.6471 without restraints) Performing minimization step: 639. Total energy = 13868.8793 kcal/mol (13866.2458 without restraints) Performing minimization step: 640. Total energy = 13857.4953 kcal/mol (13854.8643 without restraints) Performing minimization step: 641. Total energy = 13846.1313 kcal/mol (13843.5027 without restraints) Performing minimization step: 642. Total energy = 13834.7867 kcal/mol (13832.1604 without restraints) Performing minimization step: 643. Total energy = 13823.4615 kcal/mol (13820.8377 without restraints) Performing minimization step: 644. Total energy = 13812.1556 kcal/mol (13809.5341 without restraints) Performing minimization step: 645. Total energy = 13800.8694 kcal/mol (13798.2503 without restraints) Performing minimization step: 646. Total energy = 13789.6025 kcal/mol (13786.9858 without restraints) Performing minimization step: 647. Total energy = 13778.3552 kcal/mol (13775.7408 without restraints) Performing minimization step: 648. Total energy = 13767.1269 kcal/mol (13764.5149 without restraints) Performing minimization step: 649. Total energy = 13755.9174 kcal/mol (13753.3078 without restraints) Performing minimization step: 650. Total energy = 13744.7275 kcal/mol (13742.1202 without restraints) Performing minimization step: 651. Total energy = 13733.5568 kcal/mol (13730.9518 without restraints) Performing minimization step: 652. Total energy = 13722.4051 kcal/mol (13719.8024 without restraints) Performing minimization step: 653. Total energy = 13711.2725 kcal/mol (13708.6722 without restraints) Performing minimization step: 654. Total energy = 13700.1588 kcal/mol (13697.5608 without restraints) Performing minimization step: 655. Total energy = 13689.0644 kcal/mol (13686.4687 without restraints) Performing minimization step: 656. Total energy = 13677.9884 kcal/mol (13675.3951 without restraints) Performing minimization step: 657. Total energy = 13666.9315 kcal/mol (13664.3404 without restraints) Performing minimization step: 658. Total energy = 13655.8934 kcal/mol (13653.3046 without restraints) Performing minimization step: 659. Total energy = 13644.8737 kcal/mol (13642.2873 without restraints) Performing minimization step: 660. Total energy = 13633.8730 kcal/mol (13631.2889 without restraints) Performing minimization step: 661. Total energy = 13622.8907 kcal/mol (13620.3088 without restraints) Performing minimization step: 662. Total energy = 13611.9269 kcal/mol (13609.3473 without restraints) Performing minimization step: 663. Total energy = 13600.9819 kcal/mol (13598.4045 without restraints) Performing minimization step: 664. Total energy = 13590.0551 kcal/mol (13587.4800 without restraints) Performing minimization step: 665. Total energy = 13579.1468 kcal/mol (13576.5739 without restraints) Performing minimization step: 666. Total energy = 13568.2568 kcal/mol (13565.6862 without restraints) Performing minimization step: 667. Total energy = 13557.3851 kcal/mol (13554.8168 without restraints) Performing minimization step: 668. Total energy = 13546.5318 kcal/mol (13543.9657 without restraints) Performing minimization step: 669. Total energy = 13535.6966 kcal/mol (13533.1327 without restraints) Performing minimization step: 670. Total energy = 13524.8796 kcal/mol (13522.3180 without restraints) Performing minimization step: 671. Total energy = 13514.0808 kcal/mol (13511.5214 without restraints) Performing minimization step: 672. Total energy = 13503.3000 kcal/mol (13500.7428 without restraints) Performing minimization step: 673. Total energy = 13492.5375 kcal/mol (13489.9825 without restraints) Performing minimization step: 674. Total energy = 13481.7927 kcal/mol (13479.2399 without restraints) Performing minimization step: 675. Total energy = 13471.0658 kcal/mol (13468.5152 without restraints) Performing minimization step: 676. Total energy = 13460.3569 kcal/mol (13457.8085 without restraints) Performing minimization step: 677. Total energy = 13449.6657 kcal/mol (13447.1195 without restraints) Performing minimization step: 678. Total energy = 13438.9921 kcal/mol (13436.4481 without restraints) Performing minimization step: 679. Total energy = 13428.3365 kcal/mol (13425.7947 without restraints) Performing minimization step: 680. Total energy = 13417.6986 kcal/mol (13415.1589 without restraints) Performing minimization step: 681. Total energy = 13407.0783 kcal/mol (13404.5408 without restraints) Performing minimization step: 682. Total energy = 13396.4756 kcal/mol (13393.9403 without restraints) Performing minimization step: 683. Total energy = 13385.8905 kcal/mol (13383.3572 without restraints) Performing minimization step: 684. Total energy = 13375.3228 kcal/mol (13372.7917 without restraints) Performing minimization step: 685. Total energy = 13364.7726 kcal/mol (13362.2437 without restraints) Performing minimization step: 686. Total energy = 13354.2399 kcal/mol (13351.7131 without restraints) Performing minimization step: 687. Total energy = 13343.7245 kcal/mol (13341.1999 without restraints) Performing minimization step: 688. Total energy = 13333.2264 kcal/mol (13330.7039 without restraints) Performing minimization step: 689. Total energy = 13322.7455 kcal/mol (13320.2251 without restraints) Performing minimization step: 690. Total energy = 13312.2817 kcal/mol (13309.7634 without restraints) Performing minimization step: 691. Total energy = 13301.8352 kcal/mol (13299.3191 without restraints) Performing minimization step: 692. Total energy = 13291.4059 kcal/mol (13288.8919 without restraints) Performing minimization step: 693. Total energy = 13280.9937 kcal/mol (13278.4817 without restraints) Performing minimization step: 694. Total energy = 13270.5984 kcal/mol (13268.0885 without restraints) Performing minimization step: 695. Total energy = 13260.2203 kcal/mol (13257.7125 without restraints) Performing minimization step: 696. Total energy = 13249.8590 kcal/mol (13247.3533 without restraints) Performing minimization step: 697. Total energy = 13239.5148 kcal/mol (13237.0113 without restraints) Performing minimization step: 698. Total energy = 13229.1873 kcal/mol (13226.6858 without restraints) Performing minimization step: 699. Total energy = 13218.8764 kcal/mol (13216.3769 without restraints) Performing minimization step: 700. Total energy = 13208.5825 kcal/mol (13206.0851 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 701. Total energy = 13198.3052 kcal/mol (13195.8099 without restraints) Performing minimization step: 702. Total energy = 13188.0444 kcal/mol (13185.5511 without restraints) Performing minimization step: 703. Total energy = 13177.8004 kcal/mol (13175.3092 without restraints) Performing minimization step: 704. Total energy = 13167.5729 kcal/mol (13165.0837 without restraints) Performing minimization step: 705. Total energy = 13157.3621 kcal/mol (13154.8749 without restraints) Performing minimization step: 706. Total energy = 13147.1677 kcal/mol (13144.6826 without restraints) Performing minimization step: 707. Total energy = 13136.9897 kcal/mol (13134.5064 without restraints) Performing minimization step: 708. Total energy = 13126.8280 kcal/mol (13124.3469 without restraints) Performing minimization step: 709. Total energy = 13116.6829 kcal/mol (13114.2038 without restraints) Performing minimization step: 710. Total energy = 13106.5540 kcal/mol (13104.0769 without restraints) Performing minimization step: 711. Total energy = 13096.4413 kcal/mol (13093.9663 without restraints) Performing minimization step: 712. Total energy = 13086.3449 kcal/mol (13083.8719 without restraints) Performing minimization step: 713. Total energy = 13076.2647 kcal/mol (13073.7936 without restraints) Performing minimization step: 714. Total energy = 13066.2005 kcal/mol (13063.7315 without restraints) Performing minimization step: 715. Total energy = 13056.1525 kcal/mol (13053.6854 without restraints) Performing minimization step: 716. Total energy = 13046.1210 kcal/mol (13043.6559 without restraints) Performing minimization step: 717. Total energy = 13036.1049 kcal/mol (13033.6417 without restraints) Performing minimization step: 718. Total energy = 13026.1049 kcal/mol (13023.6437 without restraints) Performing minimization step: 719. Total energy = 13016.1207 kcal/mol (13013.6614 without restraints) Performing minimization step: 720. Total energy = 13006.1523 kcal/mol (13003.6951 without restraints) Performing minimization step: 721. Total energy = 12996.1998 kcal/mol (12993.7445 without restraints) Performing minimization step: 722. Total energy = 12986.2631 kcal/mol (12983.8097 without restraints) Performing minimization step: 723. Total energy = 12976.3421 kcal/mol (12973.8907 without restraints) Performing minimization step: 724. Total energy = 12966.4372 kcal/mol (12963.9877 without restraints) Performing minimization step: 725. Total energy = 12956.5475 kcal/mol (12954.1000 without restraints) Performing minimization step: 726. Total energy = 12946.6736 kcal/mol (12944.2280 without restraints) Performing minimization step: 727. Total energy = 12936.8151 kcal/mol (12934.3714 without restraints) Performing minimization step: 728. Total energy = 12926.9721 kcal/mol (12924.5303 without restraints) Performing minimization step: 729. Total energy = 12917.1445 kcal/mol (12914.7046 without restraints) Performing minimization step: 730. Total energy = 12907.3324 kcal/mol (12904.8944 without restraints) Performing minimization step: 731. Total energy = 12897.5355 kcal/mol (12895.0994 without restraints) Performing minimization step: 732. Total energy = 12887.7539 kcal/mol (12885.3197 without restraints) Performing minimization step: 733. Total energy = 12877.9878 kcal/mol (12875.5555 without restraints) Performing minimization step: 734. Total energy = 12868.2370 kcal/mol (12865.8066 without restraints) Performing minimization step: 735. Total energy = 12858.5014 kcal/mol (12856.0728 without restraints) Performing minimization step: 736. Total energy = 12848.7809 kcal/mol (12846.3543 without restraints) Performing minimization step: 737. Total energy = 12839.0756 kcal/mol (12836.6508 without restraints) Performing minimization step: 738. Total energy = 12829.3854 kcal/mol (12826.9624 without restraints) Performing minimization step: 739. Total energy = 12819.7102 kcal/mol (12817.2891 without restraints) Performing minimization step: 740. Total energy = 12810.0500 kcal/mol (12807.6308 without restraints) Performing minimization step: 741. Total energy = 12800.4048 kcal/mol (12797.9874 without restraints) Performing minimization step: 742. Total energy = 12790.7745 kcal/mol (12788.3590 without restraints) Performing minimization step: 743. Total energy = 12781.1592 kcal/mol (12778.7456 without restraints) Performing minimization step: 744. Total energy = 12771.5586 kcal/mol (12769.1468 without restraints) Performing minimization step: 745. Total energy = 12761.9729 kcal/mol (12759.5629 without restraints) Performing minimization step: 746. Total energy = 12752.4018 kcal/mol (12749.9937 without restraints) Performing minimization step: 747. Total energy = 12742.8455 kcal/mol (12740.4392 without restraints) Performing minimization step: 748. Total energy = 12733.3041 kcal/mol (12730.8995 without restraints) Performing minimization step: 749. Total energy = 12723.7771 kcal/mol (12721.3743 without restraints) Performing minimization step: 750. Total energy = 12714.2646 kcal/mol (12711.8637 without restraints) Performing minimization step: 751. Total energy = 12704.7667 kcal/mol (12702.3676 without restraints) Performing minimization step: 752. Total energy = 12695.2836 kcal/mol (12692.8863 without restraints) Performing minimization step: 753. Total energy = 12685.8147 kcal/mol (12683.4192 without restraints) Performing minimization step: 754. Total energy = 12676.3603 kcal/mol (12673.9665 without restraints) Performing minimization step: 755. Total energy = 12666.9202 kcal/mol (12664.5283 without restraints) Performing minimization step: 756. Total energy = 12657.4943 kcal/mol (12655.1042 without restraints) Performing minimization step: 757. Total energy = 12648.0829 kcal/mol (12645.6945 without restraints) Performing minimization step: 758. Total energy = 12638.6858 kcal/mol (12636.2992 without restraints) Performing minimization step: 759. Total energy = 12629.3027 kcal/mol (12626.9178 without restraints) Performing minimization step: 760. Total energy = 12619.9340 kcal/mol (12617.5509 without restraints) Performing minimization step: 761. Total energy = 12610.5794 kcal/mol (12608.1981 without restraints) Performing minimization step: 762. Total energy = 12601.2389 kcal/mol (12598.8594 without restraints) Performing minimization step: 763. Total energy = 12591.9126 kcal/mol (12589.5347 without restraints) Performing minimization step: 764. Total energy = 12582.6003 kcal/mol (12580.2242 without restraints) Performing minimization step: 765. Total energy = 12573.3017 kcal/mol (12570.9274 without restraints) Performing minimization step: 766. Total energy = 12564.0171 kcal/mol (12561.6445 without restraints) Performing minimization step: 767. Total energy = 12554.7469 kcal/mol (12552.3760 without restraints) Performing minimization step: 768. Total energy = 12545.4903 kcal/mol (12543.1213 without restraints) Performing minimization step: 769. Total energy = 12536.2477 kcal/mol (12533.8803 without restraints) Performing minimization step: 770. Total energy = 12527.0186 kcal/mol (12524.6528 without restraints) Performing minimization step: 771. Total energy = 12517.8033 kcal/mol (12515.4393 without restraints) Performing minimization step: 772. Total energy = 12508.6020 kcal/mol (12506.2397 without restraints) Performing minimization step: 773. Total energy = 12499.4143 kcal/mol (12497.0537 without restraints) Performing minimization step: 774. Total energy = 12490.2401 kcal/mol (12487.8812 without restraints) Performing minimization step: 775. Total energy = 12481.0796 kcal/mol (12478.7224 without restraints) Performing minimization step: 776. Total energy = 12471.9326 kcal/mol (12469.5771 without restraints) Performing minimization step: 777. Total energy = 12462.7992 kcal/mol (12460.4454 without restraints) Performing minimization step: 778. Total energy = 12453.6793 kcal/mol (12451.3271 without restraints) Performing minimization step: 779. Total energy = 12444.5730 kcal/mol (12442.2226 without restraints) Performing minimization step: 780. Total energy = 12435.4801 kcal/mol (12433.1313 without restraints) Performing minimization step: 781. Total energy = 12426.4004 kcal/mol (12424.0533 without restraints) Performing minimization step: 782. Total energy = 12417.3341 kcal/mol (12414.9886 without restraints) Performing minimization step: 783. Total energy = 12408.2811 kcal/mol (12405.9373 without restraints) Performing minimization step: 784. Total energy = 12399.2414 kcal/mol (12396.8993 without restraints) Performing minimization step: 785. Total energy = 12390.2148 kcal/mol (12387.8742 without restraints) Performing minimization step: 786. Total energy = 12381.2014 kcal/mol (12378.8626 without restraints) Performing minimization step: 787. Total energy = 12372.2014 kcal/mol (12369.8641 without restraints) Performing minimization step: 788. Total energy = 12363.2144 kcal/mol (12360.8788 without restraints) Performing minimization step: 789. Total energy = 12354.2405 kcal/mol (12351.9065 without restraints) Performing minimization step: 790. Total energy = 12345.2796 kcal/mol (12342.9473 without restraints) Performing minimization step: 791. Total energy = 12336.3319 kcal/mol (12334.0013 without restraints) Performing minimization step: 792. Total energy = 12327.3971 kcal/mol (12325.0680 without restraints) Performing minimization step: 793. Total energy = 12318.4752 kcal/mol (12316.1477 without restraints) Performing minimization step: 794. Total energy = 12309.5660 kcal/mol (12307.2401 without restraints) Performing minimization step: 795. Total energy = 12300.6697 kcal/mol (12298.3454 without restraints) Performing minimization step: 796. Total energy = 12291.7864 kcal/mol (12289.4637 without restraints) Performing minimization step: 797. Total energy = 12282.9160 kcal/mol (12280.5951 without restraints) Performing minimization step: 798. Total energy = 12274.0584 kcal/mol (12271.7389 without restraints) Performing minimization step: 799. Total energy = 12265.2133 kcal/mol (12262.8955 without restraints) Performing minimization step: 800. Total energy = 12256.3810 kcal/mol (12254.0647 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 801. Total energy = 12247.5614 kcal/mol (12245.2467 without restraints) Performing minimization step: 802. Total energy = 12238.7547 kcal/mol (12236.4415 without restraints) Performing minimization step: 803. Total energy = 12229.9602 kcal/mol (12227.6486 without restraints) Performing minimization step: 804. Total energy = 12221.1783 kcal/mol (12218.8683 without restraints) Performing minimization step: 805. Total energy = 12212.4089 kcal/mol (12210.1005 without restraints) Performing minimization step: 806. Total energy = 12203.6520 kcal/mol (12201.3452 without restraints) Performing minimization step: 807. Total energy = 12194.9076 kcal/mol (12192.6023 without restraints) Performing minimization step: 808. Total energy = 12186.1754 kcal/mol (12183.8715 without restraints) Performing minimization step: 809. Total energy = 12177.4555 kcal/mol (12175.1532 without restraints) Performing minimization step: 810. Total energy = 12168.7481 kcal/mol (12166.4474 without restraints) Performing minimization step: 811. Total energy = 12160.0532 kcal/mol (12157.7540 without restraints) Performing minimization step: 812. Total energy = 12151.3704 kcal/mol (12149.0728 without restraints) Performing minimization step: 813. Total energy = 12142.6999 kcal/mol (12140.4039 without restraints) Performing minimization step: 814. Total energy = 12134.0417 kcal/mol (12131.7472 without restraints) Performing minimization step: 815. Total energy = 12125.3954 kcal/mol (12123.1024 without restraints) Performing minimization step: 816. Total energy = 12116.7614 kcal/mol (12114.4700 without restraints) Performing minimization step: 817. Total energy = 12108.1398 kcal/mol (12105.8499 without restraints) Performing minimization step: 818. Total energy = 12099.5301 kcal/mol (12097.2417 without restraints) Performing minimization step: 819. Total energy = 12090.9324 kcal/mol (12088.6455 without restraints) Performing minimization step: 820. Total energy = 12082.3468 kcal/mol (12080.0615 without restraints) Performing minimization step: 821. Total energy = 12073.7731 kcal/mol (12071.4892 without restraints) Performing minimization step: 822. Total energy = 12065.2114 kcal/mol (12062.9290 without restraints) Performing minimization step: 823. Total energy = 12056.6617 kcal/mol (12054.3808 without restraints) Performing minimization step: 824. Total energy = 12048.1237 kcal/mol (12045.8443 without restraints) Performing minimization step: 825. Total energy = 12039.5973 kcal/mol (12037.3193 without restraints) Performing minimization step: 826. Total energy = 12031.0829 kcal/mol (12028.8065 without restraints) Performing minimization step: 827. Total energy = 12022.5804 kcal/mol (12020.3055 without restraints) Performing minimization step: 828. Total energy = 12014.0897 kcal/mol (12011.8162 without restraints) Performing minimization step: 829. Total energy = 12005.6109 kcal/mol (12003.3389 without restraints) Performing minimization step: 830. Total energy = 11997.1435 kcal/mol (11994.8730 without restraints) Performing minimization step: 831. Total energy = 11988.6878 kcal/mol (11986.4188 without restraints) Performing minimization step: 832. Total energy = 11980.2437 kcal/mol (11977.9761 without restraints) Performing minimization step: 833. Total energy = 11971.8114 kcal/mol (11969.5453 without restraints) Performing minimization step: 834. Total energy = 11963.3905 kcal/mol (11961.1258 without restraints) Performing minimization step: 835. Total energy = 11954.9811 kcal/mol (11952.7179 without restraints) Performing minimization step: 836. Total energy = 11946.5832 kcal/mol (11944.3214 without restraints) Performing minimization step: 837. Total energy = 11938.1967 kcal/mol (11935.9364 without restraints) Performing minimization step: 838. Total energy = 11929.8217 kcal/mol (11927.5628 without restraints) Performing minimization step: 839. Total energy = 11921.4582 kcal/mol (11919.2009 without restraints) Performing minimization step: 840. Total energy = 11913.1063 kcal/mol (11910.8503 without restraints) Performing minimization step: 841. Total energy = 11904.7654 kcal/mol (11902.5108 without restraints) Performing minimization step: 842. Total energy = 11896.4358 kcal/mol (11894.1826 without restraints) Performing minimization step: 843. Total energy = 11888.1175 kcal/mol (11885.8657 without restraints) Performing minimization step: 844. Total energy = 11879.8100 kcal/mol (11877.5597 without restraints) Performing minimization step: 845. Total energy = 11871.5142 kcal/mol (11869.2653 without restraints) Performing minimization step: 846. Total energy = 11863.2295 kcal/mol (11860.9820 without restraints) Performing minimization step: 847. Total energy = 11854.9560 kcal/mol (11852.7099 without restraints) Performing minimization step: 848. Total energy = 11846.6936 kcal/mol (11844.4489 without restraints) Performing minimization step: 849. Total energy = 11838.4423 kcal/mol (11836.1990 without restraints) Performing minimization step: 850. Total energy = 11830.2021 kcal/mol (11827.9602 without restraints) Performing minimization step: 851. Total energy = 11821.9729 kcal/mol (11819.7324 without restraints) Performing minimization step: 852. Total energy = 11813.7547 kcal/mol (11811.5156 without restraints) Performing minimization step: 853. Total energy = 11805.5475 kcal/mol (11803.3098 without restraints) Performing minimization step: 854. Total energy = 11797.3512 kcal/mol (11795.1149 without restraints) Performing minimization step: 855. Total energy = 11789.1658 kcal/mol (11786.9309 without restraints) Performing minimization step: 856. Total energy = 11780.9912 kcal/mol (11778.7576 without restraints) Performing minimization step: 857. Total energy = 11772.8275 kcal/mol (11770.5954 without restraints) Performing minimization step: 858. Total energy = 11764.6747 kcal/mol (11762.4439 without restraints) Performing minimization step: 859. Total energy = 11756.5328 kcal/mol (11754.3033 without restraints) Performing minimization step: 860. Total energy = 11748.4015 kcal/mol (11746.1735 without restraints) Performing minimization step: 861. Total energy = 11740.2811 kcal/mol (11738.0543 without restraints) Performing minimization step: 862. Total energy = 11732.1713 kcal/mol (11729.9459 without restraints) Performing minimization step: 863. Total energy = 11724.0722 kcal/mol (11721.8482 without restraints) Performing minimization step: 864. Total energy = 11715.9838 kcal/mol (11713.7611 without restraints) Performing minimization step: 865. Total energy = 11707.9059 kcal/mol (11705.6846 without restraints) Performing minimization step: 866. Total energy = 11699.8387 kcal/mol (11697.6188 without restraints) Performing minimization step: 867. Total energy = 11691.7821 kcal/mol (11689.5635 without restraints) Performing minimization step: 868. Total energy = 11683.7358 kcal/mol (11681.5185 without restraints) Performing minimization step: 869. Total energy = 11675.7003 kcal/mol (11673.4843 without restraints) Performing minimization step: 870. Total energy = 11667.6751 kcal/mol (11665.4605 without restraints) Performing minimization step: 871. Total energy = 11659.6604 kcal/mol (11657.4472 without restraints) Performing minimization step: 872. Total energy = 11651.6565 kcal/mol (11649.4445 without restraints) Performing minimization step: 873. Total energy = 11643.6626 kcal/mol (11641.4519 without restraints) Performing minimization step: 874. Total energy = 11635.6791 kcal/mol (11633.4698 without restraints) Performing minimization step: 875. Total energy = 11627.7060 kcal/mol (11625.4980 without restraints) Performing minimization step: 876. Total energy = 11619.7431 kcal/mol (11617.5364 without restraints) Performing minimization step: 877. Total energy = 11611.7906 kcal/mol (11609.5852 without restraints) Performing minimization step: 878. Total energy = 11603.8484 kcal/mol (11601.6443 without restraints) Performing minimization step: 879. Total energy = 11595.9164 kcal/mol (11593.7137 without restraints) Performing minimization step: 880. Total energy = 11587.9948 kcal/mol (11585.7933 without restraints) Performing minimization step: 881. Total energy = 11580.0832 kcal/mol (11577.8831 without restraints) Performing minimization step: 882. Total energy = 11572.1818 kcal/mol (11569.9829 without restraints) Performing minimization step: 883. Total energy = 11564.2905 kcal/mol (11562.0929 without restraints) Performing minimization step: 884. Total energy = 11556.4093 kcal/mol (11554.2131 without restraints) Performing minimization step: 885. Total energy = 11548.5383 kcal/mol (11546.3433 without restraints) Performing minimization step: 886. Total energy = 11540.6770 kcal/mol (11538.4833 without restraints) Performing minimization step: 887. Total energy = 11532.8259 kcal/mol (11530.6335 without restraints) Performing minimization step: 888. Total energy = 11524.9849 kcal/mol (11522.7937 without restraints) Performing minimization step: 889. Total energy = 11517.1538 kcal/mol (11514.9639 without restraints) Performing minimization step: 890. Total energy = 11509.3331 kcal/mol (11507.1445 without restraints) Performing minimization step: 891. Total energy = 11501.5219 kcal/mol (11499.3346 without restraints) Performing minimization step: 892. Total energy = 11493.7206 kcal/mol (11491.5345 without restraints) Performing minimization step: 893. Total energy = 11485.9295 kcal/mol (11483.7446 without restraints) Performing minimization step: 894. Total energy = 11478.1480 kcal/mol (11475.9644 without restraints) Performing minimization step: 895. Total energy = 11470.3762 kcal/mol (11468.1939 without restraints) Performing minimization step: 896. Total energy = 11462.6145 kcal/mol (11460.4334 without restraints) Performing minimization step: 897. Total energy = 11454.8622 kcal/mol (11452.6824 without restraints) Performing minimization step: 898. Total energy = 11447.1197 kcal/mol (11444.9411 without restraints) Performing minimization step: 899. Total energy = 11439.3868 kcal/mol (11437.2095 without restraints) Performing minimization step: 900. Total energy = 11431.6637 kcal/mol (11429.4876 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 901. Total energy = 11423.9503 kcal/mol (11421.7754 without restraints) Performing minimization step: 902. Total energy = 11416.2465 kcal/mol (11414.0729 without restraints) Performing minimization step: 903. Total energy = 11408.5521 kcal/mol (11406.3797 without restraints) Performing minimization step: 904. Total energy = 11400.8676 kcal/mol (11398.6965 without restraints) Performing minimization step: 905. Total energy = 11393.1926 kcal/mol (11391.0227 without restraints) Performing minimization step: 906. Total energy = 11385.5271 kcal/mol (11383.3584 without restraints) Performing minimization step: 907. Total energy = 11377.8710 kcal/mol (11375.7035 without restraints) Performing minimization step: 908. Total energy = 11370.2247 kcal/mol (11368.0584 without restraints) Performing minimization step: 909. Total energy = 11362.5877 kcal/mol (11360.4226 without restraints) Performing minimization step: 910. Total energy = 11354.9602 kcal/mol (11352.7963 without restraints) Performing minimization step: 911. Total energy = 11347.3420 kcal/mol (11345.1794 without restraints) Performing minimization step: 912. Total energy = 11339.7333 kcal/mol (11337.5718 without restraints) Performing minimization step: 913. Total energy = 11332.1338 kcal/mol (11329.9736 without restraints) Performing minimization step: 914. Total energy = 11324.5438 kcal/mol (11322.3848 without restraints) Performing minimization step: 915. Total energy = 11316.9632 kcal/mol (11314.8053 without restraints) Performing minimization step: 916. Total energy = 11309.3917 kcal/mol (11307.2351 without restraints) Performing minimization step: 917. Total energy = 11301.8296 kcal/mol (11299.6742 without restraints) Performing minimization step: 918. Total energy = 11294.2767 kcal/mol (11292.1225 without restraints) Performing minimization step: 919. Total energy = 11286.7331 kcal/mol (11284.5800 without restraints) Performing minimization step: 920. Total energy = 11279.1986 kcal/mol (11277.0467 without restraints) Performing minimization step: 921. Total energy = 11271.6733 kcal/mol (11269.5227 without restraints) Performing minimization step: 922. Total energy = 11264.1572 kcal/mol (11262.0077 without restraints) Performing minimization step: 923. Total energy = 11256.6507 kcal/mol (11254.5024 without restraints) Performing minimization step: 924. Total energy = 11249.1533 kcal/mol (11247.0061 without restraints) Performing minimization step: 925. Total energy = 11241.6645 kcal/mol (11239.5185 without restraints) Performing minimization step: 926. Total energy = 11234.1848 kcal/mol (11232.0400 without restraints) Performing minimization step: 927. Total energy = 11226.7141 kcal/mol (11224.5705 without restraints) Performing minimization step: 928. Total energy = 11219.2525 kcal/mol (11217.1100 without restraints) Performing minimization step: 929. Total energy = 11211.7998 kcal/mol (11209.6585 without restraints) Performing minimization step: 930. Total energy = 11204.3561 kcal/mol (11202.2160 without restraints) Performing minimization step: 931. Total energy = 11196.9214 kcal/mol (11194.7824 without restraints) Performing minimization step: 932. Total energy = 11189.4956 kcal/mol (11187.3577 without restraints) Performing minimization step: 933. Total energy = 11182.0786 kcal/mol (11179.9418 without restraints) Performing minimization step: 934. Total energy = 11174.6705 kcal/mol (11172.5349 without restraints) Performing minimization step: 935. Total energy = 11167.2713 kcal/mol (11165.1369 without restraints) Performing minimization step: 936. Total energy = 11159.8810 kcal/mol (11157.7478 without restraints) Performing minimization step: 937. Total energy = 11152.4995 kcal/mol (11150.3674 without restraints) Performing minimization step: 938. Total energy = 11145.1268 kcal/mol (11142.9959 without restraints) Performing minimization step: 939. Total energy = 11137.7629 kcal/mol (11135.6331 without restraints) Performing minimization step: 940. Total energy = 11130.4078 kcal/mol (11128.2791 without restraints) Performing minimization step: 941. Total energy = 11123.0615 kcal/mol (11120.9340 without restraints) Performing minimization step: 942. Total energy = 11115.7238 kcal/mol (11113.5974 without restraints) Performing minimization step: 943. Total energy = 11108.3948 kcal/mol (11106.2695 without restraints) Performing minimization step: 944. Total energy = 11101.0745 kcal/mol (11098.9503 without restraints) Performing minimization step: 945. Total energy = 11093.7628 kcal/mol (11091.6397 without restraints) Performing minimization step: 946. Total energy = 11086.4597 kcal/mol (11084.3378 without restraints) Performing minimization step: 947. Total energy = 11079.1652 kcal/mol (11077.0444 without restraints) Performing minimization step: 948. Total energy = 11071.8793 kcal/mol (11069.7596 without restraints) Performing minimization step: 949. Total energy = 11064.6020 kcal/mol (11062.4834 without restraints) Performing minimization step: 950. Total energy = 11057.3332 kcal/mol (11055.2158 without restraints) Performing minimization step: 951. Total energy = 11050.0734 kcal/mol (11047.9570 without restraints) Performing minimization step: 952. Total energy = 11042.8220 kcal/mol (11040.7068 without restraints) Performing minimization step: 953. Total energy = 11035.5787 kcal/mol (11033.4646 without restraints) Performing minimization step: 954. Total energy = 11028.3440 kcal/mol (11026.2309 without restraints) Performing minimization step: 955. Total energy = 11021.1178 kcal/mol (11019.0058 without restraints) Performing minimization step: 956. Total energy = 11013.8999 kcal/mol (11011.7891 without restraints) Performing minimization step: 957. Total energy = 11006.6903 kcal/mol (11004.5806 without restraints) Performing minimization step: 958. Total energy = 10999.4891 kcal/mol (10997.3804 without restraints) Performing minimization step: 959. Total energy = 10992.2960 kcal/mol (10990.1884 without restraints) Performing minimization step: 960. Total energy = 10985.1115 kcal/mol (10983.0050 without restraints) Performing minimization step: 961. Total energy = 10977.9353 kcal/mol (10975.8299 without restraints) Performing minimization step: 962. Total energy = 10970.7676 kcal/mol (10968.6632 without restraints) Performing minimization step: 963. Total energy = 10963.6080 kcal/mol (10961.5047 without restraints) Performing minimization step: 964. Total energy = 10956.4566 kcal/mol (10954.3544 without restraints) Performing minimization step: 965. Total energy = 10949.3134 kcal/mol (10947.2123 without restraints) Performing minimization step: 966. Total energy = 10942.1785 kcal/mol (10940.0784 without restraints) Performing minimization step: 967. Total energy = 10935.0517 kcal/mol (10932.9528 without restraints) Performing minimization step: 968. Total energy = 10927.9331 kcal/mol (10925.8352 without restraints) Performing minimization step: 969. Total energy = 10920.8227 kcal/mol (10918.7259 without restraints) Performing minimization step: 970. Total energy = 10913.7200 kcal/mol (10911.6243 without restraints) Performing minimization step: 971. Total energy = 10906.6259 kcal/mol (10904.5312 without restraints) Performing minimization step: 972. Total energy = 10899.5398 kcal/mol (10897.4462 without restraints) Performing minimization step: 973. Total energy = 10892.4619 kcal/mol (10890.3693 without restraints) Performing minimization step: 974. Total energy = 10885.3919 kcal/mol (10883.3004 without restraints) Performing minimization step: 975. Total energy = 10878.3301 kcal/mol (10876.2396 without restraints) Performing minimization step: 976. Total energy = 10871.2764 kcal/mol (10869.1869 without restraints) Performing minimization step: 977. Total energy = 10864.2304 kcal/mol (10862.1419 without restraints) Performing minimization step: 978. Total energy = 10857.1924 kcal/mol (10855.1051 without restraints) Performing minimization step: 979. Total energy = 10850.1623 kcal/mol (10848.0760 without restraints) Performing minimization step: 980. Total energy = 10843.1403 kcal/mol (10841.0550 without restraints) Performing minimization step: 981. Total energy = 10836.1263 kcal/mol (10834.0421 without restraints) Performing minimization step: 982. Total energy = 10829.1201 kcal/mol (10827.0369 without restraints) Performing minimization step: 983. Total energy = 10822.1218 kcal/mol (10820.0397 without restraints) Performing minimization step: 984. Total energy = 10815.1314 kcal/mol (10813.0503 without restraints) Performing minimization step: 985. Total energy = 10808.1489 kcal/mol (10806.0688 without restraints) Performing minimization step: 986. Total energy = 10801.1742 kcal/mol (10799.0952 without restraints) Performing minimization step: 987. Total energy = 10794.2074 kcal/mol (10792.1294 without restraints) Performing minimization step: 988. Total energy = 10787.2483 kcal/mol (10785.1714 without restraints) Performing minimization step: 989. Total energy = 10780.2970 kcal/mol (10778.2211 without restraints) Performing minimization step: 990. Total energy = 10773.3533 kcal/mol (10771.2784 without restraints) Performing minimization step: 991. Total energy = 10766.4179 kcal/mol (10764.3440 without restraints) Performing minimization step: 992. Total energy = 10759.4898 kcal/mol (10757.4170 without restraints) Performing minimization step: 993. Total energy = 10752.5694 kcal/mol (10750.4976 without restraints) Performing minimization step: 994. Total energy = 10745.6568 kcal/mol (10743.5859 without restraints) Performing minimization step: 995. Total energy = 10738.7516 kcal/mol (10736.6817 without restraints) Performing minimization step: 996. Total energy = 10731.8542 kcal/mol (10729.7854 without restraints) Performing minimization step: 997. Total energy = 10724.9645 kcal/mol (10722.8967 without restraints) Performing minimization step: 998. Total energy = 10718.0826 kcal/mol (10716.0158 without restraints) Performing minimization step: 999. Total energy = 10711.2081 kcal/mol (10709.1423 without restraints) Performing minimization step: 1000. Total energy = 10704.3412 kcal/mol (10702.2764 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 10697.4818 kcal/mol (10695.4180 without restraints) Performing minimization step: 1002. Total energy = 10690.6300 kcal/mol (10688.5672 without restraints) Performing minimization step: 1003. Total energy = 10683.7857 kcal/mol (10681.7239 without restraints) Performing minimization step: 1004. Total energy = 10676.9490 kcal/mol (10674.8881 without restraints) Performing minimization step: 1005. Total energy = 10670.1197 kcal/mol (10668.0599 without restraints) Performing minimization step: 1006. Total energy = 10663.2979 kcal/mol (10661.2391 without restraints) Performing minimization step: 1007. Total energy = 10656.4836 kcal/mol (10654.4258 without restraints) Performing minimization step: 1008. Total energy = 10649.6767 kcal/mol (10647.6199 without restraints) Performing minimization step: 1009. Total energy = 10642.8774 kcal/mol (10640.8215 without restraints) Performing minimization step: 1010. Total energy = 10636.0853 kcal/mol (10634.0305 without restraints) Performing minimization step: 1011. Total energy = 10629.3007 kcal/mol (10627.2468 without restraints) Performing minimization step: 1012. Total energy = 10622.5235 kcal/mol (10620.4705 without restraints) Performing minimization step: 1013. Total energy = 10615.7536 kcal/mol (10613.7016 without restraints) Performing minimization step: 1014. Total energy = 10608.9910 kcal/mol (10606.9400 without restraints) Performing minimization step: 1015. Total energy = 10602.2355 kcal/mol (10600.1855 without restraints) Performing minimization step: 1016. Total energy = 10595.4876 kcal/mol (10593.4386 without restraints) Performing minimization step: 1017. Total energy = 10588.7470 kcal/mol (10586.6989 without restraints) Performing minimization step: 1018. Total energy = 10582.0136 kcal/mol (10579.9665 without restraints) Performing minimization step: 1019. Total energy = 10575.2877 kcal/mol (10573.2416 without restraints) Performing minimization step: 1020. Total energy = 10568.5689 kcal/mol (10566.5238 without restraints) Performing minimization step: 1021. Total energy = 10561.8573 kcal/mol (10559.8131 without restraints) Performing minimization step: 1022. Total energy = 10555.1529 kcal/mol (10553.1097 without restraints) Performing minimization step: 1023. Total energy = 10548.4561 kcal/mol (10546.4139 without restraints) Performing minimization step: 1024. Total energy = 10541.7662 kcal/mol (10539.7249 without restraints) Performing minimization step: 1025. Total energy = 10535.0833 kcal/mol (10533.0430 without restraints) Performing minimization step: 1026. Total energy = 10528.4076 kcal/mol (10526.3682 without restraints) Performing minimization step: 1027. Total energy = 10521.7391 kcal/mol (10519.7006 without restraints) Performing minimization step: 1028. Total energy = 10515.0776 kcal/mol (10513.0401 without restraints) Performing minimization step: 1029. Total energy = 10508.4233 kcal/mol (10506.3868 without restraints) Performing minimization step: 1030. Total energy = 10501.7763 kcal/mol (10499.7407 without restraints) Performing minimization step: 1031. Total energy = 10495.1364 kcal/mol (10493.1017 without restraints) Performing minimization step: 1032. Total energy = 10488.5034 kcal/mol (10486.4697 without restraints) Performing minimization step: 1033. Total energy = 10481.8773 kcal/mol (10479.8446 without restraints) Performing minimization step: 1034. Total energy = 10475.2583 kcal/mol (10473.2264 without restraints) Performing minimization step: 1035. Total energy = 10468.6460 kcal/mol (10466.6151 without restraints) Performing minimization step: 1036. Total energy = 10462.0411 kcal/mol (10460.0111 without restraints) Performing minimization step: 1037. Total energy = 10455.4430 kcal/mol (10453.4140 without restraints) Performing minimization step: 1038. Total energy = 10448.8519 kcal/mol (10446.8238 without restraints) Performing minimization step: 1039. Total energy = 10442.2677 kcal/mol (10440.2406 without restraints) Performing minimization step: 1040. Total energy = 10435.6905 kcal/mol (10433.6643 without restraints) Performing minimization step: 1041. Total energy = 10429.1202 kcal/mol (10427.0949 without restraints) Performing minimization step: 1042. Total energy = 10422.5570 kcal/mol (10420.5326 without restraints) Performing minimization step: 1043. Total energy = 10416.0005 kcal/mol (10413.9770 without restraints) Performing minimization step: 1044. Total energy = 10409.4506 kcal/mol (10407.4281 without restraints) Performing minimization step: 1045. Total energy = 10402.9078 kcal/mol (10400.8862 without restraints) Performing minimization step: 1046. Total energy = 10396.3718 kcal/mol (10394.3510 without restraints) Performing minimization step: 1047. Total energy = 10389.8426 kcal/mol (10387.8228 without restraints) Performing minimization step: 1048. Total energy = 10383.3202 kcal/mol (10381.3014 without restraints) Performing minimization step: 1049. Total energy = 10376.8045 kcal/mol (10374.7866 without restraints) Performing minimization step: 1050. Total energy = 10370.2956 kcal/mol (10368.2785 without restraints) Performing minimization step: 1051. Total energy = 10363.7938 kcal/mol (10361.7777 without restraints) Performing minimization step: 1052. Total energy = 10357.2986 kcal/mol (10355.2834 without restraints) Performing minimization step: 1053. Total energy = 10350.8101 kcal/mol (10348.7958 without restraints) Performing minimization step: 1054. Total energy = 10344.3283 kcal/mol (10342.3149 without restraints) Performing minimization step: 1055. Total energy = 10337.8532 kcal/mol (10335.8407 without restraints) Performing minimization step: 1056. Total energy = 10331.3849 kcal/mol (10329.3733 without restraints) Performing minimization step: 1057. Total energy = 10324.9234 kcal/mol (10322.9127 without restraints) Performing minimization step: 1058. Total energy = 10318.4683 kcal/mol (10316.4586 without restraints) Performing minimization step: 1059. Total energy = 10312.0200 kcal/mol (10310.0111 without restraints) Performing minimization step: 1060. Total energy = 10305.5782 kcal/mol (10303.5702 without restraints) Performing minimization step: 1061. Total energy = 10299.1429 kcal/mol (10297.1358 without restraints) Performing minimization step: 1062. Total energy = 10292.7144 kcal/mol (10290.7082 without restraints) Performing minimization step: 1063. Total energy = 10286.2924 kcal/mol (10284.2871 without restraints) Performing minimization step: 1064. Total energy = 10279.8771 kcal/mol (10277.8727 without restraints) Performing minimization step: 1065. Total energy = 10273.4683 kcal/mol (10271.4648 without restraints) Performing minimization step: 1066. Total energy = 10267.0661 kcal/mol (10265.0635 without restraints) Performing minimization step: 1067. Total energy = 10260.6704 kcal/mol (10258.6687 without restraints) Performing minimization step: 1068. Total energy = 10254.2813 kcal/mol (10252.2804 without restraints) Performing minimization step: 1069. Total energy = 10247.8989 kcal/mol (10245.8989 without restraints) Performing minimization step: 1070. Total energy = 10241.5227 kcal/mol (10239.5236 without restraints) Performing minimization step: 1071. Total energy = 10235.1531 kcal/mol (10233.1549 without restraints) Performing minimization step: 1072. Total energy = 10228.7899 kcal/mol (10226.7925 without restraints) Performing minimization step: 1073. Total energy = 10222.4331 kcal/mol (10220.4367 without restraints) Performing minimization step: 1074. Total energy = 10216.0827 kcal/mol (10214.0871 without restraints) Performing minimization step: 1075. Total energy = 10209.7388 kcal/mol (10207.7441 without restraints) Performing minimization step: 1076. Total energy = 10203.4014 kcal/mol (10201.4075 without restraints) Performing minimization step: 1077. Total energy = 10197.0704 kcal/mol (10195.0774 without restraints) Performing minimization step: 1078. Total energy = 10190.7457 kcal/mol (10188.7536 without restraints) Performing minimization step: 1079. Total energy = 10184.4278 kcal/mol (10182.4367 without restraints) Performing minimization step: 1080. Total energy = 10178.1160 kcal/mol (10176.1256 without restraints) Performing minimization step: 1081. Total energy = 10171.8104 kcal/mol (10169.8209 without restraints) Performing minimization step: 1082. Total energy = 10165.5112 kcal/mol (10163.5226 without restraints) Performing minimization step: 1083. Total energy = 10159.2184 kcal/mol (10157.2306 without restraints) Performing minimization step: 1084. Total energy = 10152.9317 kcal/mol (10150.9447 without restraints) Performing minimization step: 1085. Total energy = 10146.6514 kcal/mol (10144.6653 without restraints) Performing minimization step: 1086. Total energy = 10140.3773 kcal/mol (10138.3921 without restraints) Performing minimization step: 1087. Total energy = 10134.1094 kcal/mol (10132.1251 without restraints) Performing minimization step: 1088. Total energy = 10127.8478 kcal/mol (10125.8643 without restraints) Performing minimization step: 1089. Total energy = 10121.5925 kcal/mol (10119.6099 without restraints) Performing minimization step: 1090. Total energy = 10115.3436 kcal/mol (10113.3618 without restraints) Performing minimization step: 1091. Total energy = 10109.1008 kcal/mol (10107.1199 without restraints) Performing minimization step: 1092. Total energy = 10102.8642 kcal/mol (10100.8841 without restraints) Performing minimization step: 1093. Total energy = 10096.6338 kcal/mol (10094.6546 without restraints) Performing minimization step: 1094. Total energy = 10090.4096 kcal/mol (10088.4312 without restraints) Performing minimization step: 1095. Total energy = 10084.1916 kcal/mol (10082.2141 without restraints) Performing minimization step: 1096. Total energy = 10077.9797 kcal/mol (10076.0029 without restraints) Performing minimization step: 1097. Total energy = 10071.7738 kcal/mol (10069.7980 without restraints) Performing minimization step: 1098. Total energy = 10065.5742 kcal/mol (10063.5992 without restraints) Performing minimization step: 1099. Total energy = 10059.3807 kcal/mol (10057.4066 without restraints) Performing minimization step: 1100. Total energy = 10053.1935 kcal/mol (10051.2202 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 10047.0123 kcal/mol (10045.0398 without restraints) Performing minimization step: 1102. Total energy = 10040.8371 kcal/mol (10038.8654 without restraints) Performing minimization step: 1103. Total energy = 10034.6677 kcal/mol (10032.6969 without restraints) Performing minimization step: 1104. Total energy = 10028.5047 kcal/mol (10026.5347 without restraints) Performing minimization step: 1105. Total energy = 10022.3476 kcal/mol (10020.3785 without restraints) Performing minimization step: 1106. Total energy = 10016.1966 kcal/mol (10014.2283 without restraints) Performing minimization step: 1107. Total energy = 10010.0516 kcal/mol (10008.0841 without restraints) Performing minimization step: 1108. Total energy = 10003.9126 kcal/mol (10001.9459 without restraints) Performing minimization step: 1109. Total energy = 9997.7796 kcal/mol (9995.8138 without restraints) Performing minimization step: 1110. Total energy = 9991.6526 kcal/mol (9989.6876 without restraints) Performing minimization step: 1111. Total energy = 9985.5316 kcal/mol (9983.5673 without restraints) Performing minimization step: 1112. Total energy = 9979.4167 kcal/mol (9977.4533 without restraints) Performing minimization step: 1113. Total energy = 9973.3076 kcal/mol (9971.3450 without restraints) Performing minimization step: 1114. Total energy = 9967.2044 kcal/mol (9965.2426 without restraints) Performing minimization step: 1115. Total energy = 9961.1071 kcal/mol (9959.1462 without restraints) Performing minimization step: 1116. Total energy = 9955.0157 kcal/mol (9953.0556 without restraints) Performing minimization step: 1117. Total energy = 9948.9303 kcal/mol (9946.9710 without restraints) Performing minimization step: 1118. Total energy = 9942.8507 kcal/mol (9940.8922 without restraints) Performing minimization step: 1119. Total energy = 9936.7771 kcal/mol (9934.8194 without restraints) Performing minimization step: 1120. Total energy = 9930.7092 kcal/mol (9928.7523 without restraints) Performing minimization step: 1121. Total energy = 9924.6472 kcal/mol (9922.6911 without restraints) Performing minimization step: 1122. Total energy = 9918.5910 kcal/mol (9916.6358 without restraints) Performing minimization step: 1123. Total energy = 9912.5407 kcal/mol (9910.5863 without restraints) Performing minimization step: 1124. Total energy = 9906.4962 kcal/mol (9904.5426 without restraints) Performing minimization step: 1125. Total energy = 9900.4575 kcal/mol (9898.5046 without restraints) Performing minimization step: 1126. Total energy = 9894.4245 kcal/mol (9892.4725 without restraints) Performing minimization step: 1127. Total energy = 9888.3974 kcal/mol (9886.4461 without restraints) Performing minimization step: 1128. Total energy = 9882.3759 kcal/mol (9880.4253 without restraints) Performing minimization step: 1129. Total energy = 9876.3601 kcal/mol (9874.4105 without restraints) Performing minimization step: 1130. Total energy = 9870.3503 kcal/mol (9868.4014 without restraints) Performing minimization step: 1131. Total energy = 9864.3462 kcal/mol (9862.3982 without restraints) Performing minimization step: 1132. Total energy = 9858.3477 kcal/mol (9856.4003 without restraints) Performing minimization step: 1133. Total energy = 9852.3551 kcal/mol (9850.4086 without restraints) Performing minimization step: 1134. Total energy = 9846.3682 kcal/mol (9844.4225 without restraints) Performing minimization step: 1135. Total energy = 9840.3864 kcal/mol (9838.4415 without restraints) Performing minimization step: 1136. Total energy = 9834.4107 kcal/mol (9832.4667 without restraints) Performing minimization step: 1137. Total energy = 9828.4408 kcal/mol (9826.4975 without restraints) Performing minimization step: 1138. Total energy = 9822.4764 kcal/mol (9820.5339 without restraints) Performing minimization step: 1139. Total energy = 9816.5178 kcal/mol (9814.5762 without restraints) Performing minimization step: 1140. Total energy = 9810.5651 kcal/mol (9808.6241 without restraints) Performing minimization step: 1141. Total energy = 9804.6176 kcal/mol (9802.6775 without restraints) Performing minimization step: 1142. Total energy = 9798.6758 kcal/mol (9796.7365 without restraints) Performing minimization step: 1143. Total energy = 9792.7397 kcal/mol (9790.8011 without restraints) Performing minimization step: 1144. Total energy = 9786.8090 kcal/mol (9784.8712 without restraints) Performing minimization step: 1145. Total energy = 9780.8840 kcal/mol (9778.9470 without restraints) Performing minimization step: 1146. Total energy = 9774.9646 kcal/mol (9773.0283 without restraints) Performing minimization step: 1147. Total energy = 9769.0507 kcal/mol (9767.1152 without restraints) Performing minimization step: 1148. Total energy = 9763.1424 kcal/mol (9761.2077 without restraints) Performing minimization step: 1149. Total energy = 9757.2397 kcal/mol (9755.3057 without restraints) Performing minimization step: 1150. Total energy = 9751.3421 kcal/mol (9749.4089 without restraints) Performing minimization step: 1151. Total energy = 9745.4502 kcal/mol (9743.5178 without restraints) Performing minimization step: 1152. Total energy = 9739.5641 kcal/mol (9737.6325 without restraints) Performing minimization step: 1153. Total energy = 9733.6834 kcal/mol (9731.7525 without restraints) Performing minimization step: 1154. Total energy = 9727.8082 kcal/mol (9725.8781 without restraints) Performing minimization step: 1155. Total energy = 9721.9386 kcal/mol (9720.0093 without restraints) Performing minimization step: 1156. Total energy = 9716.0740 kcal/mol (9714.1452 without restraints) Performing minimization step: 1157. Total energy = 9710.2149 kcal/mol (9708.2871 without restraints) Performing minimization step: 1158. Total energy = 9704.3614 kcal/mol (9702.4344 without restraints) Performing minimization step: 1159. Total energy = 9698.5136 kcal/mol (9696.5873 without restraints) Performing minimization step: 1160. Total energy = 9692.6710 kcal/mol (9690.7456 without restraints) Performing minimization step: 1161. Total energy = 9686.8341 kcal/mol (9684.9093 without restraints) Performing minimization step: 1162. Total energy = 9681.0022 kcal/mol (9679.0783 without restraints) Performing minimization step: 1163. Total energy = 9675.1753 kcal/mol (9673.2521 without restraints) Performing minimization step: 1164. Total energy = 9669.3542 kcal/mol (9667.4318 without restraints) Performing minimization step: 1165. Total energy = 9663.5386 kcal/mol (9661.6169 without restraints) Performing minimization step: 1166. Total energy = 9657.7284 kcal/mol (9655.8074 without restraints) Performing minimization step: 1167. Total energy = 9651.9234 kcal/mol (9650.0032 without restraints) Performing minimization step: 1168. Total energy = 9646.1237 kcal/mol (9644.2043 without restraints) Performing minimization step: 1169. Total energy = 9640.3294 kcal/mol (9638.4107 without restraints) Performing minimization step: 1170. Total energy = 9634.5408 kcal/mol (9632.6228 without restraints) Performing minimization step: 1171. Total energy = 9628.7570 kcal/mol (9626.8398 without restraints) Performing minimization step: 1172. Total energy = 9622.9786 kcal/mol (9621.0622 without restraints) Performing minimization step: 1173. Total energy = 9617.2055 kcal/mol (9615.2898 without restraints) Performing minimization step: 1174. Total energy = 9611.4376 kcal/mol (9609.5226 without restraints) Performing minimization step: 1175. Total energy = 9605.6750 kcal/mol (9603.7608 without restraints) Performing minimization step: 1176. Total energy = 9599.9176 kcal/mol (9598.0042 without restraints) Performing minimization step: 1177. Total energy = 9594.1655 kcal/mol (9592.2528 without restraints) Performing minimization step: 1178. Total energy = 9588.4188 kcal/mol (9586.5068 without restraints) Performing minimization step: 1179. Total energy = 9582.6770 kcal/mol (9580.7657 without restraints) Performing minimization step: 1180. Total energy = 9576.9405 kcal/mol (9575.0300 without restraints) Performing minimization step: 1181. Total energy = 9571.2095 kcal/mol (9569.2997 without restraints) Performing minimization step: 1182. Total energy = 9565.4834 kcal/mol (9563.5743 without restraints) Performing minimization step: 1183. Total energy = 9559.7625 kcal/mol (9557.8542 without restraints) Performing minimization step: 1184. Total energy = 9554.0468 kcal/mol (9552.1393 without restraints) Performing minimization step: 1185. Total energy = 9548.3364 kcal/mol (9546.4295 without restraints) Performing minimization step: 1186. Total energy = 9542.6310 kcal/mol (9540.7249 without restraints) Performing minimization step: 1187. Total energy = 9536.9308 kcal/mol (9535.0254 without restraints) Performing minimization step: 1188. Total energy = 9531.2358 kcal/mol (9529.3313 without restraints) Performing minimization step: 1189. Total energy = 9525.5460 kcal/mol (9523.6421 without restraints) Performing minimization step: 1190. Total energy = 9519.8611 kcal/mol (9517.9579 without restraints) Performing minimization step: 1191. Total energy = 9514.1814 kcal/mol (9512.2789 without restraints) Performing minimization step: 1192. Total energy = 9508.5067 kcal/mol (9506.6050 without restraints) Performing minimization step: 1193. Total energy = 9502.8372 kcal/mol (9500.9362 without restraints) Performing minimization step: 1194. Total energy = 9497.1727 kcal/mol (9495.2724 without restraints) Performing minimization step: 1195. Total energy = 9491.5134 kcal/mol (9489.6138 without restraints) Performing minimization step: 1196. Total energy = 9485.8590 kcal/mol (9483.9601 without restraints) Performing minimization step: 1197. Total energy = 9480.2097 kcal/mol (9478.3115 without restraints) Performing minimization step: 1198. Total energy = 9474.5656 kcal/mol (9472.6682 without restraints) Performing minimization step: 1199. Total energy = 9468.9264 kcal/mol (9467.0297 without restraints) Performing minimization step: 1200. Total energy = 9463.2922 kcal/mol (9461.3962 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 9457.6629 kcal/mol (9455.7677 without restraints) Performing minimization step: 1202. Total energy = 9452.0387 kcal/mol (9450.1442 without restraints) Performing minimization step: 1203. Total energy = 9446.4195 kcal/mol (9444.5256 without restraints) Performing minimization step: 1204. Total energy = 9440.8052 kcal/mol (9438.9121 without restraints) Performing minimization step: 1205. Total energy = 9435.1960 kcal/mol (9433.3036 without restraints) Performing minimization step: 1206. Total energy = 9429.5917 kcal/mol (9427.7000 without restraints) Performing minimization step: 1207. Total energy = 9423.9924 kcal/mol (9422.1014 without restraints) Performing minimization step: 1208. Total energy = 9418.3980 kcal/mol (9416.5078 without restraints) Performing minimization step: 1209. Total energy = 9412.8088 kcal/mol (9410.9192 without restraints) Performing minimization step: 1210. Total energy = 9407.2245 kcal/mol (9405.3356 without restraints) Performing minimization step: 1211. Total energy = 9401.6448 kcal/mol (9399.7567 without restraints) Performing minimization step: 1212. Total energy = 9396.0702 kcal/mol (9394.1828 without restraints) Performing minimization step: 1213. Total energy = 9390.5004 kcal/mol (9388.6137 without restraints) Performing minimization step: 1214. Total energy = 9384.9355 kcal/mol (9383.0494 without restraints) Performing minimization step: 1215. Total energy = 9379.3755 kcal/mol (9377.4901 without restraints) Performing minimization step: 1216. Total energy = 9373.8203 kcal/mol (9371.9356 without restraints) Performing minimization step: 1217. Total energy = 9368.2700 kcal/mol (9366.3860 without restraints) Performing minimization step: 1218. Total energy = 9362.7245 kcal/mol (9360.8413 without restraints) Performing minimization step: 1219. Total energy = 9357.1840 kcal/mol (9355.3014 without restraints) Performing minimization step: 1220. Total energy = 9351.6482 kcal/mol (9349.7664 without restraints) Performing minimization step: 1221. Total energy = 9346.1173 kcal/mol (9344.2362 without restraints) Performing minimization step: 1222. Total energy = 9340.5913 kcal/mol (9338.7108 without restraints) Performing minimization step: 1223. Total energy = 9335.0702 kcal/mol (9333.1904 without restraints) Performing minimization step: 1224. Total energy = 9329.5536 kcal/mol (9327.6746 without restraints) Performing minimization step: 1225. Total energy = 9324.0419 kcal/mol (9322.1635 without restraints) Performing minimization step: 1226. Total energy = 9318.5350 kcal/mol (9316.6573 without restraints) Performing minimization step: 1227. Total energy = 9313.0329 kcal/mol (9311.1558 without restraints) Performing minimization step: 1228. Total energy = 9307.5355 kcal/mol (9305.6592 without restraints) Performing minimization step: 1229. Total energy = 9302.0428 kcal/mol (9300.1672 without restraints) Performing minimization step: 1230. Total energy = 9296.5550 kcal/mol (9294.6800 without restraints) Performing minimization step: 1231. Total energy = 9291.0716 kcal/mol (9289.1973 without restraints) Performing minimization step: 1232. Total energy = 9285.5933 kcal/mol (9283.7197 without restraints) Performing minimization step: 1233. Total energy = 9280.1197 kcal/mol (9278.2468 without restraints) Performing minimization step: 1234. Total energy = 9274.6508 kcal/mol (9272.7785 without restraints) Performing minimization step: 1235. Total energy = 9269.1864 kcal/mol (9267.3149 without restraints) Performing minimization step: 1236. Total energy = 9263.7269 kcal/mol (9261.8560 without restraints) Performing minimization step: 1237. Total energy = 9258.2719 kcal/mol (9256.4018 without restraints) Performing minimization step: 1238. Total energy = 9252.8217 kcal/mol (9250.9522 without restraints) Performing minimization step: 1239. Total energy = 9247.3762 kcal/mol (9245.5073 without restraints) Performing minimization step: 1240. Total energy = 9241.9353 kcal/mol (9240.0671 without restraints) Performing minimization step: 1241. Total energy = 9236.4991 kcal/mol (9234.6316 without restraints) Performing minimization step: 1242. Total energy = 9231.0675 kcal/mol (9229.2007 without restraints) Performing minimization step: 1243. Total energy = 9225.6406 kcal/mol (9223.7745 without restraints) Performing minimization step: 1244. Total energy = 9220.2182 kcal/mol (9218.3528 without restraints) Performing minimization step: 1245. Total energy = 9214.8005 kcal/mol (9212.9358 without restraints) Performing minimization step: 1246. Total energy = 9209.3872 kcal/mol (9207.5232 without restraints) Performing minimization step: 1247. Total energy = 9203.9788 kcal/mol (9202.1153 without restraints) Performing minimization step: 1248. Total energy = 9198.5749 kcal/mol (9196.7121 without restraints) Performing minimization step: 1249. Total energy = 9193.1756 kcal/mol (9191.3135 without restraints) Performing minimization step: 1250. Total energy = 9187.7808 kcal/mol (9185.9194 without restraints) Performing minimization step: 1251. Total energy = 9182.3907 kcal/mol (9180.5300 without restraints) Performing minimization step: 1252. Total energy = 9177.0052 kcal/mol (9175.1453 without restraints) Performing minimization step: 1253. Total energy = 9171.6241 kcal/mol (9169.7647 without restraints) Performing minimization step: 1254. Total energy = 9166.2479 kcal/mol (9164.3891 without restraints) Performing minimization step: 1255. Total energy = 9160.8759 kcal/mol (9159.0178 without restraints) Performing minimization step: 1256. Total energy = 9155.5084 kcal/mol (9153.6510 without restraints) Performing minimization step: 1257. Total energy = 9150.1456 kcal/mol (9148.2889 without restraints) Performing minimization step: 1258. Total energy = 9144.7873 kcal/mol (9142.9311 without restraints) Performing minimization step: 1259. Total energy = 9139.4334 kcal/mol (9137.5779 without restraints) Performing minimization step: 1260. Total energy = 9134.0839 kcal/mol (9132.2291 without restraints) Performing minimization step: 1261. Total energy = 9128.7390 kcal/mol (9126.8848 without restraints) Performing minimization step: 1262. Total energy = 9123.3985 kcal/mol (9121.5450 without restraints) Performing minimization step: 1263. Total energy = 9118.0626 kcal/mol (9116.2097 without restraints) Performing minimization step: 1264. Total energy = 9112.7312 kcal/mol (9110.8790 without restraints) Performing minimization step: 1265. Total energy = 9107.4041 kcal/mol (9105.5526 without restraints) Performing minimization step: 1266. Total energy = 9102.0815 kcal/mol (9100.2306 without restraints) Performing minimization step: 1267. Total energy = 9096.7633 kcal/mol (9094.9131 without restraints) Performing minimization step: 1268. Total energy = 9091.4496 kcal/mol (9089.6000 without restraints) Performing minimization step: 1269. Total energy = 9086.1403 kcal/mol (9084.2913 without restraints) Performing minimization step: 1270. Total energy = 9080.8354 kcal/mol (9078.9871 without restraints) Performing minimization step: 1271. Total energy = 9075.5349 kcal/mol (9073.6873 without restraints) Performing minimization step: 1272. Total energy = 9070.2388 kcal/mol (9068.3918 without restraints) Performing minimization step: 1273. Total energy = 9064.9472 kcal/mol (9063.1009 without restraints) Performing minimization step: 1274. Total energy = 9059.6599 kcal/mol (9057.8142 without restraints) Performing minimization step: 1275. Total energy = 9054.3770 kcal/mol (9052.5320 without restraints) Performing minimization step: 1276. Total energy = 9049.0984 kcal/mol (9047.2540 without restraints) Performing minimization step: 1277. Total energy = 9043.8242 kcal/mol (9041.9804 without restraints) Performing minimization step: 1278. Total energy = 9038.5543 kcal/mol (9036.7112 without restraints) Performing minimization step: 1279. Total energy = 9033.2888 kcal/mol (9031.4463 without restraints) Performing minimization step: 1280. Total energy = 9028.0276 kcal/mol (9026.1857 without restraints) Performing minimization step: 1281. Total energy = 9022.7707 kcal/mol (9020.9295 without restraints) Performing minimization step: 1282. Total energy = 9017.5181 kcal/mol (9015.6776 without restraints) Performing minimization step: 1283. Total energy = 9012.2699 kcal/mol (9010.4300 without restraints) Performing minimization step: 1284. Total energy = 9007.0258 kcal/mol (9005.1865 without restraints) Performing minimization step: 1285. Total energy = 9001.7861 kcal/mol (8999.9475 without restraints) Performing minimization step: 1286. Total energy = 8996.5510 kcal/mol (8994.7130 without restraints) Performing minimization step: 1287. Total energy = 8991.3200 kcal/mol (8989.4827 without restraints) Performing minimization step: 1288. Total energy = 8986.0933 kcal/mol (8984.2565 without restraints) Performing minimization step: 1289. Total energy = 8980.8705 kcal/mol (8979.0344 without restraints) Performing minimization step: 1290. Total energy = 8975.6522 kcal/mol (8973.8167 without restraints) Performing minimization step: 1291. Total energy = 8970.4382 kcal/mol (8968.6034 without restraints) Performing minimization step: 1292. Total energy = 8965.2285 kcal/mol (8963.3942 without restraints) Performing minimization step: 1293. Total energy = 8960.0229 kcal/mol (8958.1893 without restraints) Performing minimization step: 1294. Total energy = 8954.8212 kcal/mol (8952.9882 without restraints) Performing minimization step: 1295. Total energy = 8949.6241 kcal/mol (8947.7917 without restraints) Performing minimization step: 1296. Total energy = 8944.4312 kcal/mol (8942.5995 without restraints) Performing minimization step: 1297. Total energy = 8939.2426 kcal/mol (8937.4115 without restraints) Performing minimization step: 1298. Total energy = 8934.0582 kcal/mol (8932.2278 without restraints) Performing minimization step: 1299. Total energy = 8928.8781 kcal/mol (8927.0482 without restraints) Performing minimization step: 1300. Total energy = 8923.7020 kcal/mol (8921.8728 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 8918.5303 kcal/mol (8916.7017 without restraints) Performing minimization step: 1302. Total energy = 8913.3625 kcal/mol (8911.5345 without restraints) Performing minimization step: 1303. Total energy = 8908.1990 kcal/mol (8906.3716 without restraints) Performing minimization step: 1304. Total energy = 8903.0396 kcal/mol (8901.2129 without restraints) Performing minimization step: 1305. Total energy = 8897.8844 kcal/mol (8896.0582 without restraints) Performing minimization step: 1306. Total energy = 8892.7332 kcal/mol (8890.9077 without restraints) Performing minimization step: 1307. Total energy = 8887.5862 kcal/mol (8885.7613 without restraints) Performing minimization step: 1308. Total energy = 8882.4433 kcal/mol (8880.6190 without restraints) Performing minimization step: 1309. Total energy = 8877.3046 kcal/mol (8875.4809 without restraints) Performing minimization step: 1310. Total energy = 8872.1702 kcal/mol (8870.3473 without restraints) Performing minimization step: 1311. Total energy = 8867.0401 kcal/mol (8865.2176 without restraints) Performing minimization step: 1312. Total energy = 8861.9130 kcal/mol (8860.0911 without restraints) Performing minimization step: 1313. Total energy = 8856.7908 kcal/mol (8854.9696 without restraints) Performing minimization step: 1314. Total energy = 8851.6727 kcal/mol (8849.8521 without restraints) Performing minimization step: 1315. Total energy = 8846.5586 kcal/mol (8844.7386 without restraints) Performing minimization step: 1316. Total energy = 8841.4486 kcal/mol (8839.6293 without restraints) Performing minimization step: 1317. Total energy = 8836.3425 kcal/mol (8834.5238 without restraints) Performing minimization step: 1318. Total energy = 8831.2405 kcal/mol (8829.4224 without restraints) Performing minimization step: 1319. Total energy = 8826.1431 kcal/mol (8824.3255 without restraints) Performing minimization step: 1320. Total energy = 8821.0492 kcal/mol (8819.2322 without restraints) Performing minimization step: 1321. Total energy = 8815.9593 kcal/mol (8814.1429 without restraints) Performing minimization step: 1322. Total energy = 8810.8734 kcal/mol (8809.0577 without restraints) Performing minimization step: 1323. Total energy = 8805.7916 kcal/mol (8803.9765 without restraints) Performing minimization step: 1324. Total energy = 8800.7138 kcal/mol (8798.8993 without restraints) Performing minimization step: 1325. Total energy = 8795.6400 kcal/mol (8793.8261 without restraints) Performing minimization step: 1326. Total energy = 8790.5702 kcal/mol (8788.7568 without restraints) Performing minimization step: 1327. Total energy = 8785.5043 kcal/mol (8783.6916 without restraints) Performing minimization step: 1328. Total energy = 8780.4425 kcal/mol (8778.6304 without restraints) Performing minimization step: 1329. Total energy = 8775.3846 kcal/mol (8773.5731 without restraints) Performing minimization step: 1330. Total energy = 8770.3308 kcal/mol (8768.5199 without restraints) Performing minimization step: 1331. Total energy = 8765.2809 kcal/mol (8763.4706 without restraints) Performing minimization step: 1332. Total energy = 8760.2350 kcal/mol (8758.4253 without restraints) Performing minimization step: 1333. Total energy = 8755.1930 kcal/mol (8753.3838 without restraints) Performing minimization step: 1334. Total energy = 8750.1549 kcal/mol (8748.3464 without restraints) Performing minimization step: 1335. Total energy = 8745.1208 kcal/mol (8743.3129 without restraints) Performing minimization step: 1336. Total energy = 8740.0907 kcal/mol (8738.2833 without restraints) Performing minimization step: 1337. Total energy = 8735.0645 kcal/mol (8733.2579 without restraints) Performing minimization step: 1338. Total energy = 8730.0423 kcal/mol (8728.2361 without restraints) Performing minimization step: 1339. Total energy = 8725.0239 kcal/mol (8723.2183 without restraints) Performing minimization step: 1340. Total energy = 8720.0094 kcal/mol (8718.2044 without restraints) Performing minimization step: 1341. Total energy = 8714.9988 kcal/mol (8713.1944 without restraints) Performing minimization step: 1342. Total energy = 8709.9921 kcal/mol (8708.1882 without restraints) Performing minimization step: 1343. Total energy = 8704.9892 kcal/mol (8703.1860 without restraints) Performing minimization step: 1344. Total energy = 8699.9902 kcal/mol (8698.1876 without restraints) Performing minimization step: 1345. Total energy = 8694.9952 kcal/mol (8693.1931 without restraints) Performing minimization step: 1346. Total energy = 8690.0039 kcal/mol (8688.2025 without restraints) Performing minimization step: 1347. Total energy = 8685.0166 kcal/mol (8683.2157 without restraints) Performing minimization step: 1348. Total energy = 8680.0330 kcal/mol (8678.2327 without restraints) Performing minimization step: 1349. Total energy = 8675.0534 kcal/mol (8673.2537 without restraints) Performing minimization step: 1350. Total energy = 8670.0777 kcal/mol (8668.2786 without restraints) Performing minimization step: 1351. Total energy = 8665.1057 kcal/mol (8663.3072 without restraints) Performing minimization step: 1352. Total energy = 8660.1376 kcal/mol (8658.3396 without restraints) Performing minimization step: 1353. Total energy = 8655.1732 kcal/mol (8653.3758 without restraints) Performing minimization step: 1354. Total energy = 8650.2127 kcal/mol (8648.4159 without restraints) Performing minimization step: 1355. Total energy = 8645.2560 kcal/mol (8643.4597 without restraints) Performing minimization step: 1356. Total energy = 8640.3032 kcal/mol (8638.5076 without restraints) Performing minimization step: 1357. Total energy = 8635.3542 kcal/mol (8633.5591 without restraints) Performing minimization step: 1358. Total energy = 8630.4088 kcal/mol (8628.6143 without restraints) Performing minimization step: 1359. Total energy = 8625.4676 kcal/mol (8623.6738 without restraints) Performing minimization step: 1360. Total energy = 8620.5302 kcal/mol (8618.7369 without restraints) Performing minimization step: 1361. Total energy = 8615.5962 kcal/mol (8613.8034 without restraints) Performing minimization step: 1362. Total energy = 8610.6660 kcal/mol (8608.8738 without restraints) Performing minimization step: 1363. Total energy = 8605.7397 kcal/mol (8603.9481 without restraints) Performing minimization step: 1364. Total energy = 8600.8170 kcal/mol (8599.0259 without restraints) Performing minimization step: 1365. Total energy = 8595.8980 kcal/mol (8594.1075 without restraints) Performing minimization step: 1366. Total energy = 8590.9825 kcal/mol (8589.1926 without restraints) Performing minimization step: 1367. Total energy = 8586.0710 kcal/mol (8584.2817 without restraints) Performing minimization step: 1368. Total energy = 8581.1632 kcal/mol (8579.3745 without restraints) Performing minimization step: 1369. Total energy = 8576.2592 kcal/mol (8574.4710 without restraints) Performing minimization step: 1370. Total energy = 8571.3588 kcal/mol (8569.5712 without restraints) Performing minimization step: 1371. Total energy = 8566.4622 kcal/mol (8564.6752 without restraints) Performing minimization step: 1372. Total energy = 8561.5693 kcal/mol (8559.7828 without restraints) Performing minimization step: 1373. Total energy = 8556.6805 kcal/mol (8554.8945 without restraints) Performing minimization step: 1374. Total energy = 8551.7949 kcal/mol (8550.0096 without restraints) Performing minimization step: 1375. Total energy = 8546.9131 kcal/mol (8545.1283 without restraints) Performing minimization step: 1376. Total energy = 8542.0349 kcal/mol (8540.2507 without restraints) Performing minimization step: 1377. Total energy = 8537.1604 kcal/mol (8535.3768 without restraints) Performing minimization step: 1378. Total energy = 8532.2896 kcal/mol (8530.5065 without restraints) Performing minimization step: 1379. Total energy = 8527.4226 kcal/mol (8525.6401 without restraints) Performing minimization step: 1380. Total energy = 8522.5591 kcal/mol (8520.7772 without restraints) Performing minimization step: 1381. Total energy = 8517.6992 kcal/mol (8515.9179 without restraints) Performing minimization step: 1382. Total energy = 8512.8430 kcal/mol (8511.0622 without restraints) Performing minimization step: 1383. Total energy = 8507.9903 kcal/mol (8506.2100 without restraints) Performing minimization step: 1384. Total energy = 8503.1413 kcal/mol (8501.3616 without restraints) Performing minimization step: 1385. Total energy = 8498.2960 kcal/mol (8496.5168 without restraints) Performing minimization step: 1386. Total energy = 8493.4545 kcal/mol (8491.6759 without restraints) Performing minimization step: 1387. Total energy = 8488.6165 kcal/mol (8486.8385 without restraints) Performing minimization step: 1388. Total energy = 8483.7820 kcal/mol (8482.0045 without restraints) Performing minimization step: 1389. Total energy = 8478.9512 kcal/mol (8477.1743 without restraints) Performing minimization step: 1390. Total energy = 8474.1239 kcal/mol (8472.3476 without restraints) Performing minimization step: 1391. Total energy = 8469.3003 kcal/mol (8467.5245 without restraints) Performing minimization step: 1392. Total energy = 8464.4802 kcal/mol (8462.7049 without restraints) Performing minimization step: 1393. Total energy = 8459.6637 kcal/mol (8457.8890 without restraints) Performing minimization step: 1394. Total energy = 8454.8508 kcal/mol (8453.0766 without restraints) Performing minimization step: 1395. Total energy = 8450.0414 kcal/mol (8448.2678 without restraints) Performing minimization step: 1396. Total energy = 8445.2358 kcal/mol (8443.4628 without restraints) Performing minimization step: 1397. Total energy = 8440.4334 kcal/mol (8438.6609 without restraints) Performing minimization step: 1398. Total energy = 8435.6347 kcal/mol (8433.8628 without restraints) Performing minimization step: 1399. Total energy = 8430.8398 kcal/mol (8429.0684 without restraints) Performing minimization step: 1400. Total energy = 8426.0483 kcal/mol (8424.2775 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 8421.2603 kcal/mol (8419.4900 without restraints) Performing minimization step: 1402. Total energy = 8416.4759 kcal/mol (8414.7061 without restraints) Performing minimization step: 1403. Total energy = 8411.6951 kcal/mol (8409.9259 without restraints) Performing minimization step: 1404. Total energy = 8406.9176 kcal/mol (8405.1489 without restraints) Performing minimization step: 1405. Total energy = 8402.1439 kcal/mol (8400.3758 without restraints) Performing minimization step: 1406. Total energy = 8397.3736 kcal/mol (8395.6060 without restraints) Performing minimization step: 1407. Total energy = 8392.6067 kcal/mol (8390.8397 without restraints) Performing minimization step: 1408. Total energy = 8387.8433 kcal/mol (8386.0768 without restraints) Performing minimization step: 1409. Total energy = 8383.0836 kcal/mol (8381.3177 without restraints) Performing minimization step: 1410. Total energy = 8378.3273 kcal/mol (8376.5619 without restraints) Performing minimization step: 1411. Total energy = 8373.5744 kcal/mol (8371.8095 without restraints) Performing minimization step: 1412. Total energy = 8368.8250 kcal/mol (8367.0606 without restraints) Performing minimization step: 1413. Total energy = 8364.0790 kcal/mol (8362.3153 without restraints) Performing minimization step: 1414. Total energy = 8359.3366 kcal/mol (8357.5733 without restraints) Performing minimization step: 1415. Total energy = 8354.5976 kcal/mol (8352.8349 without restraints) Performing minimization step: 1416. Total energy = 8349.8621 kcal/mol (8348.0999 without restraints) Performing minimization step: 1417. Total energy = 8345.1300 kcal/mol (8343.3684 without restraints) Performing minimization step: 1418. Total energy = 8340.4015 kcal/mol (8338.6404 without restraints) Performing minimization step: 1419. Total energy = 8335.6761 kcal/mol (8333.9155 without restraints) Performing minimization step: 1420. Total energy = 8330.9544 kcal/mol (8329.1944 without restraints) Performing minimization step: 1421. Total energy = 8326.2361 kcal/mol (8324.4767 without restraints) Performing minimization step: 1422. Total energy = 8321.5213 kcal/mol (8319.7623 without restraints) Performing minimization step: 1423. Total energy = 8316.8099 kcal/mol (8315.0515 without restraints) Performing minimization step: 1424. Total energy = 8312.1020 kcal/mol (8310.3441 without restraints) Performing minimization step: 1425. Total energy = 8307.3976 kcal/mol (8305.6403 without restraints) Performing minimization step: 1426. Total energy = 8302.6964 kcal/mol (8300.9396 without restraints) Performing minimization step: 1427. Total energy = 8297.9988 kcal/mol (8296.2427 without restraints) Performing minimization step: 1428. Total energy = 8293.3046 kcal/mol (8291.5489 without restraints) Performing minimization step: 1429. Total energy = 8288.6137 kcal/mol (8286.8585 without restraints) Performing minimization step: 1430. Total energy = 8283.9262 kcal/mol (8282.1715 without restraints) Performing minimization step: 1431. Total energy = 8279.2420 kcal/mol (8277.4879 without restraints) Performing minimization step: 1432. Total energy = 8274.5611 kcal/mol (8272.8075 without restraints) Performing minimization step: 1433. Total energy = 8269.8837 kcal/mol (8268.1306 without restraints) Performing minimization step: 1434. Total energy = 8265.2099 kcal/mol (8263.4574 without restraints) Performing minimization step: 1435. Total energy = 8260.5393 kcal/mol (8258.7873 without restraints) Performing minimization step: 1436. Total energy = 8255.8721 kcal/mol (8254.1206 without restraints) Performing minimization step: 1437. Total energy = 8251.2080 kcal/mol (8249.4570 without restraints) Performing minimization step: 1438. Total energy = 8246.5475 kcal/mol (8244.7970 without restraints) Performing minimization step: 1439. Total energy = 8241.8903 kcal/mol (8240.1404 without restraints) Performing minimization step: 1440. Total energy = 8237.2361 kcal/mol (8235.4867 without restraints) Performing minimization step: 1441. Total energy = 8232.5856 kcal/mol (8230.8368 without restraints) Performing minimization step: 1442. Total energy = 8227.9385 kcal/mol (8226.1902 without restraints) Performing minimization step: 1443. Total energy = 8223.2947 kcal/mol (8221.5469 without restraints) Performing minimization step: 1444. Total energy = 8218.6542 kcal/mol (8216.9070 without restraints) Performing minimization step: 1445. Total energy = 8214.0171 kcal/mol (8212.2704 without restraints) Performing minimization step: 1446. Total energy = 8209.3833 kcal/mol (8207.6370 without restraints) Performing minimization step: 1447. Total energy = 8204.7528 kcal/mol (8203.0071 without restraints) Performing minimization step: 1448. Total energy = 8200.1257 kcal/mol (8198.3805 without restraints) Performing minimization step: 1449. Total energy = 8195.5021 kcal/mol (8193.7574 without restraints) Performing minimization step: 1450. Total energy = 8190.8815 kcal/mol (8189.1374 without restraints) Performing minimization step: 1451. Total energy = 8186.2643 kcal/mol (8184.5207 without restraints) Performing minimization step: 1452. Total energy = 8181.6504 kcal/mol (8179.9073 without restraints) Performing minimization step: 1453. Total energy = 8177.0399 kcal/mol (8175.2973 without restraints) Performing minimization step: 1454. Total energy = 8172.4326 kcal/mol (8170.6906 without restraints) Performing minimization step: 1455. Total energy = 8167.8286 kcal/mol (8166.0871 without restraints) Performing minimization step: 1456. Total energy = 8163.2278 kcal/mol (8161.4868 without restraints) Performing minimization step: 1457. Total energy = 8158.6304 kcal/mol (8156.8900 without restraints) Performing minimization step: 1458. Total energy = 8154.0364 kcal/mol (8152.2965 without restraints) Performing minimization step: 1459. Total energy = 8149.4456 kcal/mol (8147.7062 without restraints) Performing minimization step: 1460. Total energy = 8144.8580 kcal/mol (8143.1191 without restraints) Performing minimization step: 1461. Total energy = 8140.2737 kcal/mol (8138.5352 without restraints) Performing minimization step: 1462. Total energy = 8135.6925 kcal/mol (8133.9546 without restraints) Performing minimization step: 1463. Total energy = 8131.1147 kcal/mol (8129.3773 without restraints) Performing minimization step: 1464. Total energy = 8126.5402 kcal/mol (8124.8033 without restraints) Performing minimization step: 1465. Total energy = 8121.9689 kcal/mol (8120.2325 without restraints) Performing minimization step: 1466. Total energy = 8117.4006 kcal/mol (8115.6648 without restraints) Performing minimization step: 1467. Total energy = 8112.8358 kcal/mol (8111.1005 without restraints) Performing minimization step: 1468. Total energy = 8108.2743 kcal/mol (8106.5395 without restraints) Performing minimization step: 1469. Total energy = 8103.7158 kcal/mol (8101.9815 without restraints) Performing minimization step: 1470. Total energy = 8099.1607 kcal/mol (8097.4269 without restraints) Performing minimization step: 1471. Total energy = 8094.6088 kcal/mol (8092.8756 without restraints) Performing minimization step: 1472. Total energy = 8090.0602 kcal/mol (8088.3274 without restraints) Performing minimization step: 1473. Total energy = 8085.5148 kcal/mol (8083.7825 without restraints) Performing minimization step: 1474. Total energy = 8080.9726 kcal/mol (8079.2409 without restraints) Performing minimization step: 1475. Total energy = 8076.4337 kcal/mol (8074.7025 without restraints) Performing minimization step: 1476. Total energy = 8071.8980 kcal/mol (8070.1673 without restraints) Performing minimization step: 1477. Total energy = 8067.3654 kcal/mol (8065.6352 without restraints) Performing minimization step: 1478. Total energy = 8062.8361 kcal/mol (8061.1064 without restraints) Performing minimization step: 1479. Total energy = 8058.3103 kcal/mol (8056.5812 without restraints) Performing minimization step: 1480. Total energy = 8053.7875 kcal/mol (8052.0589 without restraints) Performing minimization step: 1481. Total energy = 8049.2679 kcal/mol (8047.5397 without restraints) Performing minimization step: 1482. Total energy = 8044.7514 kcal/mol (8043.0237 without restraints) Performing minimization step: 1483. Total energy = 8040.2377 kcal/mol (8038.5107 without restraints) Performing minimization step: 1484. Total energy = 8035.7277 kcal/mol (8034.0011 without restraints) Performing minimization step: 1485. Total energy = 8031.2208 kcal/mol (8029.4947 without restraints) Performing minimization step: 1486. Total energy = 8026.7171 kcal/mol (8024.9915 without restraints) Performing minimization step: 1487. Total energy = 8022.2166 kcal/mol (8020.4915 without restraints) Performing minimization step: 1488. Total energy = 8017.7196 kcal/mol (8015.9950 without restraints) Performing minimization step: 1489. Total energy = 8013.2254 kcal/mol (8011.5013 without restraints) Performing minimization step: 1490. Total energy = 8008.7344 kcal/mol (8007.0108 without restraints) Performing minimization step: 1491. Total energy = 8004.2465 kcal/mol (8002.5234 without restraints) Performing minimization step: 1492. Total energy = 7999.7619 kcal/mol (7998.0394 without restraints) Performing minimization step: 1493. Total energy = 7995.2805 kcal/mol (7993.5584 without restraints) Performing minimization step: 1494. Total energy = 7990.8022 kcal/mol (7989.0806 without restraints) Performing minimization step: 1495. Total energy = 7986.3270 kcal/mol (7984.6060 without restraints) Performing minimization step: 1496. Total energy = 7981.8550 kcal/mol (7980.1345 without restraints) Performing minimization step: 1497. Total energy = 7977.3862 kcal/mol (7975.6661 without restraints) Performing minimization step: 1498. Total energy = 7972.9204 kcal/mol (7971.2009 without restraints) Performing minimization step: 1499. Total energy = 7968.4579 kcal/mol (7966.7388 without restraints) Performing minimization step: 1500. Total energy = 7963.9987 kcal/mol (7962.2802 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 7959.5424 kcal/mol (7957.8244 without restraints) Performing minimization step: 1502. Total energy = 7955.0892 kcal/mol (7953.3715 without restraints) Performing minimization step: 1503. Total energy = 7950.6390 kcal/mol (7948.9220 without restraints) Performing minimization step: 1504. Total energy = 7946.1920 kcal/mol (7944.4754 without restraints) Performing minimization step: 1505. Total energy = 7941.7484 kcal/mol (7940.0324 without restraints) Performing minimization step: 1506. Total energy = 7937.3079 kcal/mol (7935.5924 without restraints) Performing minimization step: 1507. Total energy = 7932.8705 kcal/mol (7931.1555 without restraints) Performing minimization step: 1508. Total energy = 7928.4362 kcal/mol (7926.7217 without restraints) Performing minimization step: 1509. Total energy = 7924.0055 kcal/mol (7922.2914 without restraints) Performing minimization step: 1510. Total energy = 7919.5774 kcal/mol (7917.8639 without restraints) Performing minimization step: 1511. Total energy = 7915.1526 kcal/mol (7913.4397 without restraints) Performing minimization step: 1512. Total energy = 7910.7309 kcal/mol (7909.0184 without restraints) Performing minimization step: 1513. Total energy = 7906.3122 kcal/mol (7904.6002 without restraints) Performing minimization step: 1514. Total energy = 7901.8966 kcal/mol (7900.1851 without restraints) Performing minimization step: 1515. Total energy = 7897.4842 kcal/mol (7895.7732 without restraints) Performing minimization step: 1516. Total energy = 7893.0747 kcal/mol (7891.3641 without restraints) Performing minimization step: 1517. Total energy = 7888.6684 kcal/mol (7886.9584 without restraints) Performing minimization step: 1518. Total energy = 7884.2653 kcal/mol (7882.5558 without restraints) Performing minimization step: 1519. Total energy = 7879.8652 kcal/mol (7878.1562 without restraints) Performing minimization step: 1520. Total energy = 7875.4683 kcal/mol (7873.7598 without restraints) Performing minimization step: 1521. Total energy = 7871.0745 kcal/mol (7869.3665 without restraints) Performing minimization step: 1522. Total energy = 7866.6838 kcal/mol (7864.9762 without restraints) Performing minimization step: 1523. Total energy = 7862.2963 kcal/mol (7860.5893 without restraints) Performing minimization step: 1524. Total energy = 7857.9118 kcal/mol (7856.2053 without restraints) Performing minimization step: 1525. Total energy = 7853.5304 kcal/mol (7851.8243 without restraints) Performing minimization step: 1526. Total energy = 7849.1521 kcal/mol (7847.4465 without restraints) Performing minimization step: 1527. Total energy = 7844.7769 kcal/mol (7843.0718 without restraints) Performing minimization step: 1528. Total energy = 7840.4047 kcal/mol (7838.7001 without restraints) Performing minimization step: 1529. Total energy = 7836.0356 kcal/mol (7834.3316 without restraints) Performing minimization step: 1530. Total energy = 7831.6696 kcal/mol (7829.9661 without restraints) Performing minimization step: 1531. Total energy = 7827.3065 kcal/mol (7825.6035 without restraints) Performing minimization step: 1532. Total energy = 7822.9467 kcal/mol (7821.2441 without restraints) Performing minimization step: 1533. Total energy = 7818.5904 kcal/mol (7816.8883 without restraints) Performing minimization step: 1534. Total energy = 7814.2369 kcal/mol (7812.5353 without restraints) Performing minimization step: 1535. Total energy = 7809.8862 kcal/mol (7808.1851 without restraints) Performing minimization step: 1536. Total energy = 7805.5387 kcal/mol (7803.8381 without restraints) Performing minimization step: 1537. Total energy = 7801.1943 kcal/mol (7799.4942 without restraints) Performing minimization step: 1538. Total energy = 7796.8530 kcal/mol (7795.1534 without restraints) Performing minimization step: 1539. Total energy = 7792.5147 kcal/mol (7790.8157 without restraints) Performing minimization step: 1540. Total energy = 7788.1796 kcal/mol (7786.4810 without restraints) Performing minimization step: 1541. Total energy = 7783.8472 kcal/mol (7782.1491 without restraints) Performing minimization step: 1542. Total energy = 7779.5180 kcal/mol (7777.8204 without restraints) Performing minimization step: 1543. Total energy = 7775.1921 kcal/mol (7773.4949 without restraints) Performing minimization step: 1544. Total energy = 7770.8692 kcal/mol (7769.1725 without restraints) Performing minimization step: 1545. Total energy = 7766.5493 kcal/mol (7764.8532 without restraints) Performing minimization step: 1546. Total energy = 7762.2326 kcal/mol (7760.5369 without restraints) Performing minimization step: 1547. Total energy = 7757.9191 kcal/mol (7756.2240 without restraints) Performing minimization step: 1548. Total energy = 7753.6085 kcal/mol (7751.9139 without restraints) Performing minimization step: 1549. Total energy = 7749.3009 kcal/mol (7747.6068 without restraints) Performing minimization step: 1550. Total energy = 7744.9964 kcal/mol (7743.3028 without restraints) Performing minimization step: 1551. Total energy = 7740.6948 kcal/mol (7739.0016 without restraints) Performing minimization step: 1552. Total energy = 7736.3964 kcal/mol (7734.7038 without restraints) Performing minimization step: 1553. Total energy = 7732.1011 kcal/mol (7730.4089 without restraints) Performing minimization step: 1554. Total energy = 7727.8089 kcal/mol (7726.1172 without restraints) Performing minimization step: 1555. Total energy = 7723.5197 kcal/mol (7721.8285 without restraints) Performing minimization step: 1556. Total energy = 7719.2335 kcal/mol (7717.5428 without restraints) Performing minimization step: 1557. Total energy = 7714.9507 kcal/mol (7713.2605 without restraints) Performing minimization step: 1558. Total energy = 7710.6706 kcal/mol (7708.9809 without restraints) Performing minimization step: 1559. Total energy = 7706.3940 kcal/mol (7704.7048 without restraints) Performing minimization step: 1560. Total energy = 7702.1203 kcal/mol (7700.4316 without restraints) Performing minimization step: 1561. Total energy = 7697.8494 kcal/mol (7696.1612 without restraints) Performing minimization step: 1562. Total energy = 7693.5819 kcal/mol (7691.8941 without restraints) Performing minimization step: 1563. Total energy = 7689.3171 kcal/mol (7687.6298 without restraints) Performing minimization step: 1564. Total energy = 7685.0556 kcal/mol (7683.3690 without restraints) Performing minimization step: 1565. Total energy = 7680.7972 kcal/mol (7679.1110 without restraints) Performing minimization step: 1566. Total energy = 7676.5416 kcal/mol (7674.8558 without restraints) Performing minimization step: 1567. Total energy = 7672.2890 kcal/mol (7670.6037 without restraints) Performing minimization step: 1568. Total energy = 7668.0397 kcal/mol (7666.3549 without restraints) Performing minimization step: 1569. Total energy = 7663.7932 kcal/mol (7662.1089 without restraints) Performing minimization step: 1570. Total energy = 7659.5499 kcal/mol (7657.8661 without restraints) Performing minimization step: 1571. Total energy = 7655.3095 kcal/mol (7653.6262 without restraints) Performing minimization step: 1572. Total energy = 7651.0722 kcal/mol (7649.3893 without restraints) Performing minimization step: 1573. Total energy = 7646.8376 kcal/mol (7645.1553 without restraints) Performing minimization step: 1574. Total energy = 7642.6063 kcal/mol (7640.9245 without restraints) Performing minimization step: 1575. Total energy = 7638.3781 kcal/mol (7636.6968 without restraints) Performing minimization step: 1576. Total energy = 7634.1531 kcal/mol (7632.4723 without restraints) Performing minimization step: 1577. Total energy = 7629.9310 kcal/mol (7628.2506 without restraints) Performing minimization step: 1578. Total energy = 7625.7121 kcal/mol (7624.0322 without restraints) Performing minimization step: 1579. Total energy = 7621.4960 kcal/mol (7619.8166 without restraints) Performing minimization step: 1580. Total energy = 7617.2830 kcal/mol (7615.6041 without restraints) Performing minimization step: 1581. Total energy = 7613.0732 kcal/mol (7611.3948 without restraints) Performing minimization step: 1582. Total energy = 7608.8662 kcal/mol (7607.1884 without restraints) Performing minimization step: 1583. Total energy = 7604.6623 kcal/mol (7602.9849 without restraints) Performing minimization step: 1584. Total energy = 7600.4615 kcal/mol (7598.7846 without restraints) Performing minimization step: 1585. Total energy = 7596.2638 kcal/mol (7594.5874 without restraints) Performing minimization step: 1586. Total energy = 7592.0690 kcal/mol (7590.3931 without restraints) Performing minimization step: 1587. Total energy = 7587.8775 kcal/mol (7586.2020 without restraints) Performing minimization step: 1588. Total energy = 7583.6887 kcal/mol (7582.0138 without restraints) Performing minimization step: 1589. Total energy = 7579.5030 kcal/mol (7577.8284 without restraints) Performing minimization step: 1590. Total energy = 7575.3201 kcal/mol (7573.6461 without restraints) Performing minimization step: 1591. Total energy = 7571.1405 kcal/mol (7569.4670 without restraints) Performing minimization step: 1592. Total energy = 7566.9641 kcal/mol (7565.2912 without restraints) Performing minimization step: 1593. Total energy = 7562.7903 kcal/mol (7561.1178 without restraints) Performing minimization step: 1594. Total energy = 7558.6194 kcal/mol (7556.9474 without restraints) Performing minimization step: 1595. Total energy = 7554.4520 kcal/mol (7552.7805 without restraints) Performing minimization step: 1596. Total energy = 7550.2876 kcal/mol (7548.6166 without restraints) Performing minimization step: 1597. Total energy = 7546.1262 kcal/mol (7544.4557 without restraints) Performing minimization step: 1598. Total energy = 7541.9679 kcal/mol (7540.2979 without restraints) Performing minimization step: 1599. Total energy = 7537.8126 kcal/mol (7536.1431 without restraints) Performing minimization step: 1600. Total energy = 7533.6604 kcal/mol (7531.9914 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 7529.5112 kcal/mol (7527.8427 without restraints) Performing minimization step: 1602. Total energy = 7525.3651 kcal/mol (7523.6970 without restraints) Performing minimization step: 1603. Total energy = 7521.2219 kcal/mol (7519.5544 without restraints) Performing minimization step: 1604. Total energy = 7517.0819 kcal/mol (7515.4148 without restraints) Performing minimization step: 1605. Total energy = 7512.9449 kcal/mol (7511.2783 without restraints) Performing minimization step: 1606. Total energy = 7508.8108 kcal/mol (7507.1447 without restraints) Performing minimization step: 1607. Total energy = 7504.6799 kcal/mol (7503.0143 without restraints) Performing minimization step: 1608. Total energy = 7500.5524 kcal/mol (7498.8873 without restraints) Performing minimization step: 1609. Total energy = 7496.4275 kcal/mol (7494.7629 without restraints) Performing minimization step: 1610. Total energy = 7492.3056 kcal/mol (7490.6415 without restraints) Performing minimization step: 1611. Total energy = 7488.1869 kcal/mol (7486.5232 without restraints) Performing minimization step: 1612. Total energy = 7484.0711 kcal/mol (7482.4079 without restraints) Performing minimization step: 1613. Total energy = 7479.9583 kcal/mol (7478.2957 without restraints) Performing minimization step: 1614. Total energy = 7475.8486 kcal/mol (7474.1865 without restraints) Performing minimization step: 1615. Total energy = 7471.7420 kcal/mol (7470.0803 without restraints) Performing minimization step: 1616. Total energy = 7467.6384 kcal/mol (7465.9772 without restraints) Performing minimization step: 1617. Total energy = 7463.5380 kcal/mol (7461.8773 without restraints) Performing minimization step: 1618. Total energy = 7459.4405 kcal/mol (7457.7803 without restraints) Performing minimization step: 1619. Total energy = 7455.3460 kcal/mol (7453.6863 without restraints) Performing minimization step: 1620. Total energy = 7451.2546 kcal/mol (7449.5954 without restraints) Performing minimization step: 1621. Total energy = 7447.1662 kcal/mol (7445.5074 without restraints) Performing minimization step: 1622. Total energy = 7443.0808 kcal/mol (7441.4226 without restraints) Performing minimization step: 1623. Total energy = 7438.9984 kcal/mol (7437.3407 without restraints) Performing minimization step: 1624. Total energy = 7434.9191 kcal/mol (7433.2619 without restraints) Performing minimization step: 1625. Total energy = 7430.8429 kcal/mol (7429.1863 without restraints) Performing minimization step: 1626. Total energy = 7426.7698 kcal/mol (7425.1136 without restraints) Performing minimization step: 1627. Total energy = 7422.6996 kcal/mol (7421.0439 without restraints) Performing minimization step: 1628. Total energy = 7418.6325 kcal/mol (7416.9772 without restraints) Performing minimization step: 1629. Total energy = 7414.5684 kcal/mol (7412.9136 without restraints) Performing minimization step: 1630. Total energy = 7410.5074 kcal/mol (7408.8531 without restraints) Performing minimization step: 1631. Total energy = 7406.4494 kcal/mol (7404.7956 without restraints) Performing minimization step: 1632. Total energy = 7402.3944 kcal/mol (7400.7411 without restraints) Performing minimization step: 1633. Total energy = 7398.3425 kcal/mol (7396.6897 without restraints) Performing minimization step: 1634. Total energy = 7394.2936 kcal/mol (7392.6413 without restraints) Performing minimization step: 1635. Total energy = 7390.2478 kcal/mol (7388.5960 without restraints) Performing minimization step: 1636. Total energy = 7386.2050 kcal/mol (7384.5537 without restraints) Performing minimization step: 1637. Total energy = 7382.1653 kcal/mol (7380.5145 without restraints) Performing minimization step: 1638. Total energy = 7378.1288 kcal/mol (7376.4785 without restraints) Performing minimization step: 1639. Total energy = 7374.0950 kcal/mol (7372.4451 without restraints) Performing minimization step: 1640. Total energy = 7370.0645 kcal/mol (7368.4152 without restraints) Performing minimization step: 1641. Total energy = 7366.0369 kcal/mol (7364.3881 without restraints) Performing minimization step: 1642. Total energy = 7362.0124 kcal/mol (7360.3641 without restraints) Performing minimization step: 1643. Total energy = 7357.9909 kcal/mol (7356.3431 without restraints) Performing minimization step: 1644. Total energy = 7353.9725 kcal/mol (7352.3251 without restraints) Performing minimization step: 1645. Total energy = 7349.9571 kcal/mol (7348.3103 without restraints) Performing minimization step: 1646. Total energy = 7345.9448 kcal/mol (7344.2984 without restraints) Performing minimization step: 1647. Total energy = 7341.9357 kcal/mol (7340.2898 without restraints) Performing minimization step: 1648. Total energy = 7337.9296 kcal/mol (7336.2843 without restraints) Performing minimization step: 1649. Total energy = 7333.9267 kcal/mol (7332.2818 without restraints) Performing minimization step: 1650. Total energy = 7329.9266 kcal/mol (7328.2822 without restraints) Performing minimization step: 1651. Total energy = 7325.9295 kcal/mol (7324.2856 without restraints) Performing minimization step: 1652. Total energy = 7321.9355 kcal/mol (7320.2921 without restraints) Performing minimization step: 1653. Total energy = 7317.9447 kcal/mol (7316.3018 without restraints) Performing minimization step: 1654. Total energy = 7313.9568 kcal/mol (7312.3144 without restraints) Performing minimization step: 1655. Total energy = 7309.9721 kcal/mol (7308.3302 without restraints) Performing minimization step: 1656. Total energy = 7305.9903 kcal/mol (7304.3488 without restraints) Performing minimization step: 1657. Total energy = 7302.0115 kcal/mol (7300.3705 without restraints) Performing minimization step: 1658. Total energy = 7298.0357 kcal/mol (7296.3952 without restraints) Performing minimization step: 1659. Total energy = 7294.0630 kcal/mol (7292.4230 without restraints) Performing minimization step: 1660. Total energy = 7290.0933 kcal/mol (7288.4539 without restraints) Performing minimization step: 1661. Total energy = 7286.1267 kcal/mol (7284.4877 without restraints) Performing minimization step: 1662. Total energy = 7282.1631 kcal/mol (7280.5247 without restraints) Performing minimization step: 1663. Total energy = 7278.2026 kcal/mol (7276.5647 without restraints) Performing minimization step: 1664. Total energy = 7274.2452 kcal/mol (7272.6078 without restraints) Performing minimization step: 1665. Total energy = 7270.2909 kcal/mol (7268.6539 without restraints) Performing minimization step: 1666. Total energy = 7266.3398 kcal/mol (7264.7033 without restraints) Performing minimization step: 1667. Total energy = 7262.3915 kcal/mol (7260.7555 without restraints) Performing minimization step: 1668. Total energy = 7258.4463 kcal/mol (7256.8108 without restraints) Performing minimization step: 1669. Total energy = 7254.5040 kcal/mol (7252.8690 without restraints) Performing minimization step: 1670. Total energy = 7250.5650 kcal/mol (7248.9305 without restraints) Performing minimization step: 1671. Total energy = 7246.6287 kcal/mol (7244.9947 without restraints) Performing minimization step: 1672. Total energy = 7242.6960 kcal/mol (7241.0625 without restraints) Performing minimization step: 1673. Total energy = 7238.7662 kcal/mol (7237.1333 without restraints) Performing minimization step: 1674. Total energy = 7234.8395 kcal/mol (7233.2069 without restraints) Performing minimization step: 1675. Total energy = 7230.9156 kcal/mol (7229.2836 without restraints) Performing minimization step: 1676. Total energy = 7226.9949 kcal/mol (7225.3634 without restraints) Performing minimization step: 1677. Total energy = 7223.0772 kcal/mol (7221.4462 without restraints) Performing minimization step: 1678. Total energy = 7219.1626 kcal/mol (7217.5320 without restraints) Performing minimization step: 1679. Total energy = 7215.2510 kcal/mol (7213.6210 without restraints) Performing minimization step: 1680. Total energy = 7211.3427 kcal/mol (7209.7132 without restraints) Performing minimization step: 1681. Total energy = 7207.4373 kcal/mol (7205.8082 without restraints) Performing minimization step: 1682. Total energy = 7203.5349 kcal/mol (7201.9063 without restraints) Performing minimization step: 1683. Total energy = 7199.6357 kcal/mol (7198.0077 without restraints) Performing minimization step: 1684. Total energy = 7195.7394 kcal/mol (7194.1119 without restraints) Performing minimization step: 1685. Total energy = 7191.8457 kcal/mol (7190.2186 without restraints) Performing minimization step: 1686. Total energy = 7187.9554 kcal/mol (7186.3288 without restraints) Performing minimization step: 1687. Total energy = 7184.0682 kcal/mol (7182.4421 without restraints) Performing minimization step: 1688. Total energy = 7180.1842 kcal/mol (7178.5586 without restraints) Performing minimization step: 1689. Total energy = 7176.3030 kcal/mol (7174.6777 without restraints) Performing minimization step: 1690. Total energy = 7172.4249 kcal/mol (7170.8003 without restraints) Performing minimization step: 1691. Total energy = 7168.5500 kcal/mol (7166.9259 without restraints) Performing minimization step: 1692. Total energy = 7164.6781 kcal/mol (7163.0546 without restraints) Performing minimization step: 1693. Total energy = 7160.8094 kcal/mol (7159.1864 without restraints) Performing minimization step: 1694. Total energy = 7156.9437 kcal/mol (7155.3212 without restraints) Performing minimization step: 1695. Total energy = 7153.0811 kcal/mol (7151.4590 without restraints) Performing minimization step: 1696. Total energy = 7149.2215 kcal/mol (7147.5999 without restraints) Performing minimization step: 1697. Total energy = 7145.3650 kcal/mol (7143.7439 without restraints) Performing minimization step: 1698. Total energy = 7141.5118 kcal/mol (7139.8912 without restraints) Performing minimization step: 1699. Total energy = 7137.6614 kcal/mol (7136.0413 without restraints) Performing minimization step: 1700. Total energy = 7133.8139 kcal/mol (7132.1943 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 7129.9696 kcal/mol (7128.3506 without restraints) Performing minimization step: 1702. Total energy = 7126.1287 kcal/mol (7124.5101 without restraints) Performing minimization step: 1703. Total energy = 7122.2907 kcal/mol (7120.6726 without restraints) Performing minimization step: 1704. Total energy = 7118.4556 kcal/mol (7116.8380 without restraints) Performing minimization step: 1705. Total energy = 7114.6236 kcal/mol (7113.0065 without restraints) Performing minimization step: 1706. Total energy = 7110.7947 kcal/mol (7109.1781 without restraints) Performing minimization step: 1707. Total energy = 7106.9688 kcal/mol (7105.3527 without restraints) Performing minimization step: 1708. Total energy = 7103.1460 kcal/mol (7101.5303 without restraints) Performing minimization step: 1709. Total energy = 7099.3262 kcal/mol (7097.7111 without restraints) Performing minimization step: 1710. Total energy = 7095.5095 kcal/mol (7093.8949 without restraints) Performing minimization step: 1711. Total energy = 7091.6959 kcal/mol (7090.0818 without restraints) Performing minimization step: 1712. Total energy = 7087.8853 kcal/mol (7086.2717 without restraints) Performing minimization step: 1713. Total energy = 7084.0778 kcal/mol (7082.4647 without restraints) Performing minimization step: 1714. Total energy = 7080.2735 kcal/mol (7078.6610 without restraints) Performing minimization step: 1715. Total energy = 7076.4722 kcal/mol (7074.8601 without restraints) Performing minimization step: 1716. Total energy = 7072.6739 kcal/mol (7071.0623 without restraints) Performing minimization step: 1717. Total energy = 7068.8786 kcal/mol (7067.2675 without restraints) Performing minimization step: 1718. Total energy = 7065.0866 kcal/mol (7063.4760 without restraints) Performing minimization step: 1719. Total energy = 7061.2975 kcal/mol (7059.6873 without restraints) Performing minimization step: 1720. Total energy = 7057.5114 kcal/mol (7055.9018 without restraints) Performing minimization step: 1721. Total energy = 7053.7284 kcal/mol (7052.1192 without restraints) Performing minimization step: 1722. Total energy = 7049.9484 kcal/mol (7048.3398 without restraints) Performing minimization step: 1723. Total energy = 7046.1715 kcal/mol (7044.5634 without restraints) Performing minimization step: 1724. Total energy = 7042.3976 kcal/mol (7040.7900 without restraints) Performing minimization step: 1725. Total energy = 7038.6269 kcal/mol (7037.0197 without restraints) Performing minimization step: 1726. Total energy = 7034.8591 kcal/mol (7033.2523 without restraints) Performing minimization step: 1727. Total energy = 7031.0943 kcal/mol (7029.4882 without restraints) Performing minimization step: 1728. Total energy = 7027.3323 kcal/mol (7025.7266 without restraints) Performing minimization step: 1729. Total energy = 7023.5737 kcal/mol (7021.9686 without restraints) Performing minimization step: 1730. Total energy = 7019.8183 kcal/mol (7018.2136 without restraints) Performing minimization step: 1731. Total energy = 7016.0658 kcal/mol (7014.4617 without restraints) Performing minimization step: 1732. Total energy = 7012.3165 kcal/mol (7010.7128 without restraints) Performing minimization step: 1733. Total energy = 7008.5702 kcal/mol (7006.9671 without restraints) Performing minimization step: 1734. Total energy = 7004.8269 kcal/mol (7003.2243 without restraints) Performing minimization step: 1735. Total energy = 7001.0870 kcal/mol (6999.4848 without restraints) Performing minimization step: 1736. Total energy = 6997.3499 kcal/mol (6995.7482 without restraints) Performing minimization step: 1737. Total energy = 6993.6158 kcal/mol (6992.0147 without restraints) Performing minimization step: 1738. Total energy = 6989.8849 kcal/mol (6988.2842 without restraints) Performing minimization step: 1739. Total energy = 6986.1567 kcal/mol (6984.5565 without restraints) Performing minimization step: 1740. Total energy = 6982.4324 kcal/mol (6980.8329 without restraints) Performing minimization step: 1741. Total energy = 6978.7107 kcal/mol (6977.1115 without restraints) Performing minimization step: 1742. Total energy = 6974.9919 kcal/mol (6973.3932 without restraints) Performing minimization step: 1743. Total energy = 6971.2762 kcal/mol (6969.6781 without restraints) Performing minimization step: 1744. Total energy = 6967.5636 kcal/mol (6965.9659 without restraints) Performing minimization step: 1745. Total energy = 6963.8539 kcal/mol (6962.2568 without restraints) Performing minimization step: 1746. Total energy = 6960.1476 kcal/mol (6958.5509 without restraints) Performing minimization step: 1747. Total energy = 6956.4439 kcal/mol (6954.8478 without restraints) Performing minimization step: 1748. Total energy = 6952.7435 kcal/mol (6951.1479 without restraints) Performing minimization step: 1749. Total energy = 6949.0461 kcal/mol (6947.4510 without restraints) Performing minimization step: 1750. Total energy = 6945.3519 kcal/mol (6943.7572 without restraints) Performing minimization step: 1751. Total energy = 6941.6604 kcal/mol (6940.0662 without restraints) Performing minimization step: 1752. Total energy = 6937.9721 kcal/mol (6936.3785 without restraints) Performing minimization step: 1753. Total energy = 6934.2870 kcal/mol (6932.6938 without restraints) Performing minimization step: 1754. Total energy = 6930.6049 kcal/mol (6929.0123 without restraints) Performing minimization step: 1755. Total energy = 6926.9259 kcal/mol (6925.3337 without restraints) Performing minimization step: 1756. Total energy = 6923.2501 kcal/mol (6921.6585 without restraints) Performing minimization step: 1757. Total energy = 6919.5773 kcal/mol (6917.9863 without restraints) Performing minimization step: 1758. Total energy = 6915.9075 kcal/mol (6914.3169 without restraints) Performing minimization step: 1759. Total energy = 6912.2407 kcal/mol (6910.6505 without restraints) Performing minimization step: 1760. Total energy = 6908.5771 kcal/mol (6906.9875 without restraints) Performing minimization step: 1761. Total energy = 6904.9162 kcal/mol (6903.3270 without restraints) Performing minimization step: 1762. Total energy = 6901.2587 kcal/mol (6899.6701 without restraints) Performing minimization step: 1763. Total energy = 6897.6041 kcal/mol (6896.0159 without restraints) Performing minimization step: 1764. Total energy = 6893.9525 kcal/mol (6892.3648 without restraints) Performing minimization step: 1765. Total energy = 6890.3039 kcal/mol (6888.7168 without restraints) Performing minimization step: 1766. Total energy = 6886.6584 kcal/mol (6885.0718 without restraints) Performing minimization step: 1767. Total energy = 6883.0160 kcal/mol (6881.4298 without restraints) Performing minimization step: 1768. Total energy = 6879.3768 kcal/mol (6877.7911 without restraints) Performing minimization step: 1769. Total energy = 6875.7404 kcal/mol (6874.1552 without restraints) Performing minimization step: 1770. Total energy = 6872.1071 kcal/mol (6870.5224 without restraints) Performing minimization step: 1771. Total energy = 6868.4768 kcal/mol (6866.8926 without restraints) Performing minimization step: 1772. Total energy = 6864.8496 kcal/mol (6863.2659 without restraints) Performing minimization step: 1773. Total energy = 6861.2254 kcal/mol (6859.6422 without restraints) Performing minimization step: 1774. Total energy = 6857.6041 kcal/mol (6856.0214 without restraints) Performing minimization step: 1775. Total energy = 6853.9860 kcal/mol (6852.4038 without restraints) Performing minimization step: 1776. Total energy = 6850.3706 kcal/mol (6848.7890 without restraints) Performing minimization step: 1777. Total energy = 6846.7586 kcal/mol (6845.1774 without restraints) Performing minimization step: 1778. Total energy = 6843.1496 kcal/mol (6841.5689 without restraints) Performing minimization step: 1779. Total energy = 6839.5436 kcal/mol (6837.9634 without restraints) Performing minimization step: 1780. Total energy = 6835.9409 kcal/mol (6834.3613 without restraints) Performing minimization step: 1781. Total energy = 6832.3412 kcal/mol (6830.7620 without restraints) Performing minimization step: 1782. Total energy = 6828.7443 kcal/mol (6827.1657 without restraints) Performing minimization step: 1783. Total energy = 6825.1505 kcal/mol (6823.5723 without restraints) Performing minimization step: 1784. Total energy = 6821.5597 kcal/mol (6819.9821 without restraints) Performing minimization step: 1785. Total energy = 6817.9720 kcal/mol (6816.3948 without restraints) Performing minimization step: 1786. Total energy = 6814.3873 kcal/mol (6812.8106 without restraints) Performing minimization step: 1787. Total energy = 6810.8056 kcal/mol (6809.2294 without restraints) Performing minimization step: 1788. Total energy = 6807.2271 kcal/mol (6805.6514 without restraints) Performing minimization step: 1789. Total energy = 6803.6515 kcal/mol (6802.0763 without restraints) Performing minimization step: 1790. Total energy = 6800.0789 kcal/mol (6798.5042 without restraints) Performing minimization step: 1791. Total energy = 6796.5093 kcal/mol (6794.9351 without restraints) Performing minimization step: 1792. Total energy = 6792.9427 kcal/mol (6791.3691 without restraints) Performing minimization step: 1793. Total energy = 6789.3793 kcal/mol (6787.8061 without restraints) Performing minimization step: 1794. Total energy = 6785.8188 kcal/mol (6784.2461 without restraints) Performing minimization step: 1795. Total energy = 6782.2613 kcal/mol (6780.6891 without restraints) Performing minimization step: 1796. Total energy = 6778.7069 kcal/mol (6777.1352 without restraints) Performing minimization step: 1797. Total energy = 6775.1555 kcal/mol (6773.5843 without restraints) Performing minimization step: 1798. Total energy = 6771.6071 kcal/mol (6770.0364 without restraints) Performing minimization step: 1799. Total energy = 6768.0617 kcal/mol (6766.4915 without restraints) Performing minimization step: 1800. Total energy = 6764.5194 kcal/mol (6762.9497 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 6760.9801 kcal/mol (6759.4109 without restraints) Performing minimization step: 1802. Total energy = 6757.4438 kcal/mol (6755.8751 without restraints) Performing minimization step: 1803. Total energy = 6753.9106 kcal/mol (6752.3425 without restraints) Performing minimization step: 1804. Total energy = 6750.3802 kcal/mol (6748.8125 without restraints) Performing minimization step: 1805. Total energy = 6746.8529 kcal/mol (6745.2856 without restraints) Performing minimization step: 1806. Total energy = 6743.3285 kcal/mol (6741.7618 without restraints) Performing minimization step: 1807. Total energy = 6739.8073 kcal/mol (6738.2411 without restraints) Performing minimization step: 1808. Total energy = 6736.2890 kcal/mol (6734.7233 without restraints) Performing minimization step: 1809. Total energy = 6732.7738 kcal/mol (6731.2086 without restraints) Performing minimization step: 1810. Total energy = 6729.2616 kcal/mol (6727.6969 without restraints) Performing minimization step: 1811. Total energy = 6725.7525 kcal/mol (6724.1884 without restraints) Performing minimization step: 1812. Total energy = 6722.2464 kcal/mol (6720.6827 without restraints) Performing minimization step: 1813. Total energy = 6718.7432 kcal/mol (6717.1800 without restraints) Performing minimization step: 1814. Total energy = 6715.2430 kcal/mol (6713.6803 without restraints) Performing minimization step: 1815. Total energy = 6711.7456 kcal/mol (6710.1834 without restraints) Performing minimization step: 1816. Total energy = 6708.2517 kcal/mol (6706.6900 without restraints) Performing minimization step: 1817. Total energy = 6704.7605 kcal/mol (6703.1993 without restraints) Performing minimization step: 1818. Total energy = 6701.2723 kcal/mol (6699.7116 without restraints) Performing minimization step: 1819. Total energy = 6697.7871 kcal/mol (6696.2269 without restraints) Performing minimization step: 1820. Total energy = 6694.3049 kcal/mol (6692.7452 without restraints) Performing minimization step: 1821. Total energy = 6690.8257 kcal/mol (6689.2665 without restraints) Performing minimization step: 1822. Total energy = 6687.3495 kcal/mol (6685.7908 without restraints) Performing minimization step: 1823. Total energy = 6683.8763 kcal/mol (6682.3181 without restraints) Performing minimization step: 1824. Total energy = 6680.4061 kcal/mol (6678.8484 without restraints) Performing minimization step: 1825. Total energy = 6676.9386 kcal/mol (6675.3814 without restraints) Performing minimization step: 1826. Total energy = 6673.4744 kcal/mol (6671.9177 without restraints) Performing minimization step: 1827. Total energy = 6670.0132 kcal/mol (6668.4570 without restraints) Performing minimization step: 1828. Total energy = 6666.5549 kcal/mol (6664.9990 without restraints) Performing minimization step: 1829. Total energy = 6663.0996 kcal/mol (6661.5443 without restraints) Performing minimization step: 1830. Total energy = 6659.6473 kcal/mol (6658.0925 without restraints) Performing minimization step: 1831. Total energy = 6656.1980 kcal/mol (6654.6438 without restraints) Performing minimization step: 1832. Total energy = 6652.7516 kcal/mol (6651.1977 without restraints) Performing minimization step: 1833. Total energy = 6649.3082 kcal/mol (6647.7549 without restraints) Performing minimization step: 1834. Total energy = 6645.8682 kcal/mol (6644.3154 without restraints) Performing minimization step: 1835. Total energy = 6642.4309 kcal/mol (6640.8786 without restraints) Performing minimization step: 1836. Total energy = 6638.9966 kcal/mol (6637.4449 without restraints) Performing minimization step: 1837. Total energy = 6635.5653 kcal/mol (6634.0140 without restraints) Performing minimization step: 1838. Total energy = 6632.1364 kcal/mol (6630.5856 without restraints) Performing minimization step: 1839. Total energy = 6628.7110 kcal/mol (6627.1607 without restraints) Performing minimization step: 1840. Total energy = 6625.2885 kcal/mol (6623.7387 without restraints) Performing minimization step: 1841. Total energy = 6621.8690 kcal/mol (6620.3196 without restraints) Performing minimization step: 1842. Total energy = 6618.4524 kcal/mol (6616.9037 without restraints) Performing minimization step: 1843. Total energy = 6615.0390 kcal/mol (6613.4908 without restraints) Performing minimization step: 1844. Total energy = 6611.6286 kcal/mol (6610.0807 without restraints) Performing minimization step: 1845. Total energy = 6608.2210 kcal/mol (6606.6736 without restraints) Performing minimization step: 1846. Total energy = 6604.8163 kcal/mol (6603.2695 without restraints) Performing minimization step: 1847. Total energy = 6601.4146 kcal/mol (6599.8683 without restraints) Performing minimization step: 1848. Total energy = 6598.0159 kcal/mol (6596.4700 without restraints) Performing minimization step: 1849. Total energy = 6594.6202 kcal/mol (6593.0749 without restraints) Performing minimization step: 1850. Total energy = 6591.2274 kcal/mol (6589.6826 without restraints) Performing minimization step: 1851. Total energy = 6587.8376 kcal/mol (6586.2932 without restraints) Performing minimization step: 1852. Total energy = 6584.4506 kcal/mol (6582.9066 without restraints) Performing minimization step: 1853. Total energy = 6581.0665 kcal/mol (6579.5231 without restraints) Performing minimization step: 1854. Total energy = 6577.6855 kcal/mol (6576.1426 without restraints) Performing minimization step: 1855. Total energy = 6574.3077 kcal/mol (6572.7653 without restraints) Performing minimization step: 1856. Total energy = 6570.9325 kcal/mol (6569.3906 without restraints) Performing minimization step: 1857. Total energy = 6567.5603 kcal/mol (6566.0189 without restraints) Performing minimization step: 1858. Total energy = 6564.1912 kcal/mol (6562.6503 without restraints) Performing minimization step: 1859. Total energy = 6560.8249 kcal/mol (6559.2845 without restraints) Performing minimization step: 1860. Total energy = 6557.4616 kcal/mol (6555.9217 without restraints) Performing minimization step: 1861. Total energy = 6554.1014 kcal/mol (6552.5620 without restraints) Performing minimization step: 1862. Total energy = 6550.7440 kcal/mol (6549.2051 without restraints) Performing minimization step: 1863. Total energy = 6547.3895 kcal/mol (6545.8511 without restraints) Performing minimization step: 1864. Total energy = 6544.0379 kcal/mol (6542.5000 without restraints) Performing minimization step: 1865. Total energy = 6540.6895 kcal/mol (6539.1521 without restraints) Performing minimization step: 1866. Total energy = 6537.3438 kcal/mol (6535.8069 without restraints) Performing minimization step: 1867. Total energy = 6534.0011 kcal/mol (6532.4647 without restraints) Performing minimization step: 1868. Total energy = 6530.6613 kcal/mol (6529.1254 without restraints) Performing minimization step: 1869. Total energy = 6527.3244 kcal/mol (6525.7890 without restraints) Performing minimization step: 1870. Total energy = 6523.9903 kcal/mol (6522.4553 without restraints) Performing minimization step: 1871. Total energy = 6520.6595 kcal/mol (6519.1250 without restraints) Performing minimization step: 1872. Total energy = 6517.3314 kcal/mol (6515.7974 without restraints) Performing minimization step: 1873. Total energy = 6514.0063 kcal/mol (6512.4729 without restraints) Performing minimization step: 1874. Total energy = 6510.6841 kcal/mol (6509.1511 without restraints) Performing minimization step: 1875. Total energy = 6507.3648 kcal/mol (6505.8323 without restraints) Performing minimization step: 1876. Total energy = 6504.0484 kcal/mol (6502.5164 without restraints) Performing minimization step: 1877. Total energy = 6500.7349 kcal/mol (6499.2034 without restraints) Performing minimization step: 1878. Total energy = 6497.4243 kcal/mol (6495.8933 without restraints) Performing minimization step: 1879. Total energy = 6494.1166 kcal/mol (6492.5861 without restraints) Performing minimization step: 1880. Total energy = 6490.8117 kcal/mol (6489.2817 without restraints) Performing minimization step: 1881. Total energy = 6487.5099 kcal/mol (6485.9804 without restraints) Performing minimization step: 1882. Total energy = 6484.2110 kcal/mol (6482.6819 without restraints) Performing minimization step: 1883. Total energy = 6480.9150 kcal/mol (6479.3864 without restraints) Performing minimization step: 1884. Total energy = 6477.6219 kcal/mol (6476.0938 without restraints) Performing minimization step: 1885. Total energy = 6474.3317 kcal/mol (6472.8040 without restraints) Performing minimization step: 1886. Total energy = 6471.0445 kcal/mol (6469.5176 without restraints) Performing minimization step: 1887. Total energy = 6467.7603 kcal/mol (6466.2337 without restraints) Performing minimization step: 1888. Total energy = 6464.4792 kcal/mol (6462.9531 without restraints) Performing minimization step: 1889. Total energy = 6461.2009 kcal/mol (6459.6753 without restraints) Performing minimization step: 1890. Total energy = 6457.9252 kcal/mol (6456.4001 without restraints) Performing minimization step: 1891. Total energy = 6454.6524 kcal/mol (6453.1278 without restraints) Performing minimization step: 1892. Total energy = 6451.3825 kcal/mol (6449.8584 without restraints) Performing minimization step: 1893. Total energy = 6448.1156 kcal/mol (6446.5919 without restraints) Performing minimization step: 1894. Total energy = 6444.8515 kcal/mol (6443.3283 without restraints) Performing minimization step: 1895. Total energy = 6441.5903 kcal/mol (6440.0676 without restraints) Performing minimization step: 1896. Total energy = 6438.3318 kcal/mol (6436.8096 without restraints) Performing minimization step: 1897. Total energy = 6435.0764 kcal/mol (6433.5547 without restraints) Performing minimization step: 1898. Total energy = 6431.8238 kcal/mol (6430.3026 without restraints) Performing minimization step: 1899. Total energy = 6428.5741 kcal/mol (6427.0534 without restraints) Performing minimization step: 1900. Total energy = 6425.3273 kcal/mol (6423.8071 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 6422.0834 kcal/mol (6420.5637 without restraints) Performing minimization step: 1902. Total energy = 6418.8424 kcal/mol (6417.3231 without restraints) Performing minimization step: 1903. Total energy = 6415.6043 kcal/mol (6414.0855 without restraints) Performing minimization step: 1904. Total energy = 6412.3690 kcal/mol (6410.8507 without restraints) Performing minimization step: 1905. Total energy = 6409.1363 kcal/mol (6407.6186 without restraints) Performing minimization step: 1906. Total energy = 6405.9068 kcal/mol (6404.3895 without restraints) Performing minimization step: 1907. Total energy = 6402.6802 kcal/mol (6401.1636 without restraints) Performing minimization step: 1908. Total energy = 6399.4565 kcal/mol (6397.9402 without restraints) Performing minimization step: 1909. Total energy = 6396.2357 kcal/mol (6394.7199 without restraints) Performing minimization step: 1910. Total energy = 6393.0176 kcal/mol (6391.5023 without restraints) Performing minimization step: 1911. Total energy = 6389.8024 kcal/mol (6388.2876 without restraints) Performing minimization step: 1912. Total energy = 6386.5901 kcal/mol (6385.0758 without restraints) Performing minimization step: 1913. Total energy = 6383.3809 kcal/mol (6381.8670 without restraints) Performing minimization step: 1914. Total energy = 6380.1742 kcal/mol (6378.6609 without restraints) Performing minimization step: 1915. Total energy = 6376.9705 kcal/mol (6375.4576 without restraints) Performing minimization step: 1916. Total energy = 6373.7695 kcal/mol (6372.2572 without restraints) Performing minimization step: 1917. Total energy = 6370.5715 kcal/mol (6369.0596 without restraints) Performing minimization step: 1918. Total energy = 6367.3761 kcal/mol (6365.8647 without restraints) Performing minimization step: 1919. Total energy = 6364.1837 kcal/mol (6362.6728 without restraints) Performing minimization step: 1920. Total energy = 6360.9942 kcal/mol (6359.4838 without restraints) Performing minimization step: 1921. Total energy = 6357.8078 kcal/mol (6356.2979 without restraints) Performing minimization step: 1922. Total energy = 6354.6242 kcal/mol (6353.1148 without restraints) Performing minimization step: 1923. Total energy = 6351.4433 kcal/mol (6349.9343 without restraints) Performing minimization step: 1924. Total energy = 6348.2651 kcal/mol (6346.7567 without restraints) Performing minimization step: 1925. Total energy = 6345.0899 kcal/mol (6343.5819 without restraints) Performing minimization step: 1926. Total energy = 6341.9174 kcal/mol (6340.4099 without restraints) Performing minimization step: 1927. Total energy = 6338.7476 kcal/mol (6337.2406 without restraints) Performing minimization step: 1928. Total energy = 6335.5810 kcal/mol (6334.0745 without restraints) Performing minimization step: 1929. Total energy = 6332.4169 kcal/mol (6330.9108 without restraints) Performing minimization step: 1930. Total energy = 6329.2557 kcal/mol (6327.7502 without restraints) Performing minimization step: 1931. Total energy = 6326.0974 kcal/mol (6324.5924 without restraints) Performing minimization step: 1932. Total energy = 6322.9420 kcal/mol (6321.4374 without restraints) Performing minimization step: 1933. Total energy = 6319.7894 kcal/mol (6318.2855 without restraints) Performing minimization step: 1934. Total energy = 6316.6401 kcal/mol (6315.1366 without restraints) Performing minimization step: 1935. Total energy = 6313.4932 kcal/mol (6311.9901 without restraints) Performing minimization step: 1936. Total energy = 6310.3490 kcal/mol (6308.8464 without restraints) Performing minimization step: 1937. Total energy = 6307.2076 kcal/mol (6305.7055 without restraints) Performing minimization step: 1938. Total energy = 6304.0691 kcal/mol (6302.5674 without restraints) Performing minimization step: 1939. Total energy = 6300.9334 kcal/mol (6299.4322 without restraints) Performing minimization step: 1940. Total energy = 6297.8005 kcal/mol (6296.2998 without restraints) Performing minimization step: 1941. Total energy = 6294.6702 kcal/mol (6293.1700 without restraints) Performing minimization step: 1942. Total energy = 6291.5429 kcal/mol (6290.0432 without restraints) Performing minimization step: 1943. Total energy = 6288.4184 kcal/mol (6286.9192 without restraints) Performing minimization step: 1944. Total energy = 6285.2969 kcal/mol (6283.7982 without restraints) Performing minimization step: 1945. Total energy = 6282.1780 kcal/mol (6280.6798 without restraints) Performing minimization step: 1946. Total energy = 6279.0620 kcal/mol (6277.5643 without restraints) Performing minimization step: 1947. Total energy = 6275.9487 kcal/mol (6274.4515 without restraints) Performing minimization step: 1948. Total energy = 6272.8383 kcal/mol (6271.3415 without restraints) Performing minimization step: 1949. Total energy = 6269.7306 kcal/mol (6268.2343 without restraints) Performing minimization step: 1950. Total energy = 6266.6257 kcal/mol (6265.1299 without restraints) Performing minimization step: 1951. Total energy = 6263.5236 kcal/mol (6262.0283 without restraints) Performing minimization step: 1952. Total energy = 6260.4243 kcal/mol (6258.9295 without restraints) Performing minimization step: 1953. Total energy = 6257.3278 kcal/mol (6255.8334 without restraints) Performing minimization step: 1954. Total energy = 6254.2340 kcal/mol (6252.7401 without restraints) Performing minimization step: 1955. Total energy = 6251.1431 kcal/mol (6249.6497 without restraints) Performing minimization step: 1956. Total energy = 6248.0549 kcal/mol (6246.5620 without restraints) Performing minimization step: 1957. Total energy = 6244.9691 kcal/mol (6243.4767 without restraints) Performing minimization step: 1958. Total energy = 6241.8865 kcal/mol (6240.3946 without restraints) Performing minimization step: 1959. Total energy = 6238.8069 kcal/mol (6237.3155 without restraints) Performing minimization step: 1960. Total energy = 6235.7301 kcal/mol (6234.2391 without restraints) Performing minimization step: 1961. Total energy = 6232.6559 kcal/mol (6231.1654 without restraints) Performing minimization step: 1962. Total energy = 6229.5844 kcal/mol (6228.0944 without restraints) Performing minimization step: 1963. Total energy = 6226.5157 kcal/mol (6225.0262 without restraints) Performing minimization step: 1964. Total energy = 6223.4498 kcal/mol (6221.9608 without restraints) Performing minimization step: 1965. Total energy = 6220.3870 kcal/mol (6218.8985 without restraints) Performing minimization step: 1966. Total energy = 6217.3266 kcal/mol (6215.8385 without restraints) Performing minimization step: 1967. Total energy = 6214.2689 kcal/mol (6212.7814 without restraints) Performing minimization step: 1968. Total energy = 6211.2141 kcal/mol (6209.7270 without restraints) Performing minimization step: 1969. Total energy = 6208.1621 kcal/mol (6206.6756 without restraints) Performing minimization step: 1970. Total energy = 6205.1126 kcal/mol (6203.6265 without restraints) Performing minimization step: 1971. Total energy = 6202.0660 kcal/mol (6200.5804 without restraints) Performing minimization step: 1972. Total energy = 6199.0222 kcal/mol (6197.5371 without restraints) Performing minimization step: 1973. Total energy = 6195.9813 kcal/mol (6194.4967 without restraints) Performing minimization step: 1974. Total energy = 6192.9430 kcal/mol (6191.4588 without restraints) Performing minimization step: 1975. Total energy = 6189.9076 kcal/mol (6188.4240 without restraints) Performing minimization step: 1976. Total energy = 6186.8751 kcal/mol (6185.3919 without restraints) Performing minimization step: 1977. Total energy = 6183.8450 kcal/mol (6182.3623 without restraints) Performing minimization step: 1978. Total energy = 6180.8176 kcal/mol (6179.3352 without restraints) Performing minimization step: 1979. Total energy = 6177.7930 kcal/mol (6176.3113 without restraints) Performing minimization step: 1980. Total energy = 6174.7712 kcal/mol (6173.2899 without restraints) Performing minimization step: 1981. Total energy = 6171.7521 kcal/mol (6170.2713 without restraints) Performing minimization step: 1982. Total energy = 6168.7357 kcal/mol (6167.2554 without restraints) Performing minimization step: 1983. Total energy = 6165.7221 kcal/mol (6164.2422 without restraints) Performing minimization step: 1984. Total energy = 6162.7111 kcal/mol (6161.2317 without restraints) Performing minimization step: 1985. Total energy = 6159.7031 kcal/mol (6158.2242 without restraints) Performing minimization step: 1986. Total energy = 6156.6976 kcal/mol (6155.2192 without restraints) Performing minimization step: 1987. Total energy = 6153.6947 kcal/mol (6152.2168 without restraints) Performing minimization step: 1988. Total energy = 6150.6947 kcal/mol (6149.2173 without restraints) Performing minimization step: 1989. Total energy = 6147.6975 kcal/mol (6146.2205 without restraints) Performing minimization step: 1990. Total energy = 6144.7029 kcal/mol (6143.2265 without restraints) Performing minimization step: 1991. Total energy = 6141.7105 kcal/mol (6140.2345 without restraints) Performing minimization step: 1992. Total energy = 6138.7214 kcal/mol (6137.2459 without restraints) Performing minimization step: 1993. Total energy = 6135.7353 kcal/mol (6134.2602 without restraints) Performing minimization step: 1994. Total energy = 6132.7514 kcal/mol (6131.2769 without restraints) Performing minimization step: 1995. Total energy = 6129.7707 kcal/mol (6128.2967 without restraints) Performing minimization step: 1996. Total energy = 6126.7928 kcal/mol (6125.3192 without restraints) Performing minimization step: 1997. Total energy = 6123.8172 kcal/mol (6122.3442 without restraints) Performing minimization step: 1998. Total energy = 6120.8444 kcal/mol (6119.3718 without restraints) Performing minimization step: 1999. Total energy = 6117.8744 kcal/mol (6116.4022 without restraints) Performing minimization step: 2000. Total energy = 6114.9070 kcal/mol (6113.4353 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 6111.9423 kcal/mol (6110.4711 without restraints) Performing minimization step: 2002. Total energy = 6108.9803 kcal/mol (6107.5096 without restraints) Performing minimization step: 2003. Total energy = 6106.0210 kcal/mol (6104.5508 without restraints) Performing minimization step: 2004. Total energy = 6103.0645 kcal/mol (6101.5949 without restraints) Performing minimization step: 2005. Total energy = 6100.1108 kcal/mol (6098.6415 without restraints) Performing minimization step: 2006. Total energy = 6097.1596 kcal/mol (6095.6908 without restraints) Performing minimization step: 2007. Total energy = 6094.2111 kcal/mol (6092.7428 without restraints) Performing minimization step: 2008. Total energy = 6091.2654 kcal/mol (6089.7977 without restraints) Performing minimization step: 2009. Total energy = 6088.3226 kcal/mol (6086.8553 without restraints) Performing minimization step: 2010. Total energy = 6085.3824 kcal/mol (6083.9156 without restraints) Performing minimization step: 2011. Total energy = 6082.4447 kcal/mol (6080.9783 without restraints) Performing minimization step: 2012. Total energy = 6079.5096 kcal/mol (6078.0436 without restraints) Performing minimization step: 2013. Total energy = 6076.5772 kcal/mol (6075.1119 without restraints) Performing minimization step: 2014. Total energy = 6073.6477 kcal/mol (6072.1828 without restraints) Performing minimization step: 2015. Total energy = 6070.7207 kcal/mol (6069.2561 without restraints) Performing minimization step: 2016. Total energy = 6067.7962 kcal/mol (6066.3321 without restraints) Performing minimization step: 2017. Total energy = 6064.8744 kcal/mol (6063.4110 without restraints) Performing minimization step: 2018. Total energy = 6061.9553 kcal/mol (6060.4922 without restraints) Performing minimization step: 2019. Total energy = 6059.0389 kcal/mol (6057.5764 without restraints) Performing minimization step: 2020. Total energy = 6056.1252 kcal/mol (6054.6632 without restraints) Performing minimization step: 2021. Total energy = 6053.2143 kcal/mol (6051.7527 without restraints) Performing minimization step: 2022. Total energy = 6050.3059 kcal/mol (6048.8447 without restraints) Performing minimization step: 2023. Total energy = 6047.4001 kcal/mol (6045.9395 without restraints) Performing minimization step: 2024. Total energy = 6044.4972 kcal/mol (6043.0371 without restraints) Performing minimization step: 2025. Total energy = 6041.5969 kcal/mol (6040.1372 without restraints) Performing minimization step: 2026. Total energy = 6038.6990 kcal/mol (6037.2399 without restraints) Performing minimization step: 2027. Total energy = 6035.8041 kcal/mol (6034.3454 without restraints) Performing minimization step: 2028. Total energy = 6032.9118 kcal/mol (6031.4536 without restraints) Performing minimization step: 2029. Total energy = 6030.0221 kcal/mol (6028.5644 without restraints) Performing minimization step: 2030. Total energy = 6027.1351 kcal/mol (6025.6778 without restraints) Performing minimization step: 2031. Total energy = 6024.2505 kcal/mol (6022.7938 without restraints) Performing minimization step: 2032. Total energy = 6021.3688 kcal/mol (6019.9125 without restraints) Performing minimization step: 2033. Total energy = 6018.4897 kcal/mol (6017.0339 without restraints) Performing minimization step: 2034. Total energy = 6015.6134 kcal/mol (6014.1580 without restraints) Performing minimization step: 2035. Total energy = 6012.7395 kcal/mol (6011.2846 without restraints) Performing minimization step: 2036. Total energy = 6009.8683 kcal/mol (6008.4140 without restraints) Performing minimization step: 2037. Total energy = 6006.9999 kcal/mol (6005.5460 without restraints) Performing minimization step: 2038. Total energy = 6004.1341 kcal/mol (6002.6806 without restraints) Performing minimization step: 2039. Total energy = 6001.2709 kcal/mol (5999.8180 without restraints) Performing minimization step: 2040. Total energy = 5998.4103 kcal/mol (5996.9579 without restraints) Performing minimization step: 2041. Total energy = 5995.5522 kcal/mol (5994.1002 without restraints) Performing minimization step: 2042. Total energy = 5992.6969 kcal/mol (5991.2454 without restraints) Performing minimization step: 2043. Total energy = 5989.8443 kcal/mol (5988.3932 without restraints) Performing minimization step: 2044. Total energy = 5986.9942 kcal/mol (5985.5437 without restraints) Performing minimization step: 2045. Total energy = 5984.1468 kcal/mol (5982.6967 without restraints) Performing minimization step: 2046. Total energy = 5981.3019 kcal/mol (5979.8522 without restraints) Performing minimization step: 2047. Total energy = 5978.4596 kcal/mol (5977.0105 without restraints) Performing minimization step: 2048. Total energy = 5975.6201 kcal/mol (5974.1714 without restraints) Performing minimization step: 2049. Total energy = 5972.7833 kcal/mol (5971.3350 without restraints) Performing minimization step: 2050. Total energy = 5969.9489 kcal/mol (5968.5012 without restraints) Performing minimization step: 2051. Total energy = 5967.1172 kcal/mol (5965.6700 without restraints) Performing minimization step: 2052. Total energy = 5964.2884 kcal/mol (5962.8418 without restraints) Performing minimization step: 2053. Total energy = 5961.4621 kcal/mol (5960.0159 without restraints) Performing minimization step: 2054. Total energy = 5958.6385 kcal/mol (5957.1927 without restraints) Performing minimization step: 2055. Total energy = 5955.8172 kcal/mol (5954.3719 without restraints) Performing minimization step: 2056. Total energy = 5952.9986 kcal/mol (5951.5538 without restraints) Performing minimization step: 2057. Total energy = 5950.1826 kcal/mol (5948.7382 without restraints) Performing minimization step: 2058. Total energy = 5947.3694 kcal/mol (5945.9255 without restraints) Performing minimization step: 2059. Total energy = 5944.5586 kcal/mol (5943.1152 without restraints) Performing minimization step: 2060. Total energy = 5941.7504 kcal/mol (5940.3075 without restraints) Performing minimization step: 2061. Total energy = 5938.9447 kcal/mol (5937.5022 without restraints) Performing minimization step: 2062. Total energy = 5936.1416 kcal/mol (5934.6996 without restraints) Performing minimization step: 2063. Total energy = 5933.3412 kcal/mol (5931.8998 without restraints) Performing minimization step: 2064. Total energy = 5930.5434 kcal/mol (5929.1024 without restraints) Performing minimization step: 2065. Total energy = 5927.7482 kcal/mol (5926.3077 without restraints) Performing minimization step: 2066. Total energy = 5924.9558 kcal/mol (5923.5157 without restraints) Performing minimization step: 2067. Total energy = 5922.1657 kcal/mol (5920.7261 without restraints) Performing minimization step: 2068. Total energy = 5919.3782 kcal/mol (5917.9391 without restraints) Performing minimization step: 2069. Total energy = 5916.5933 kcal/mol (5915.1547 without restraints) Performing minimization step: 2070. Total energy = 5913.8111 kcal/mol (5912.3729 without restraints) Performing minimization step: 2071. Total energy = 5911.0314 kcal/mol (5909.5937 without restraints) Performing minimization step: 2072. Total energy = 5908.2544 kcal/mol (5906.8172 without restraints) Performing minimization step: 2073. Total energy = 5905.4797 kcal/mol (5904.0430 without restraints) Performing minimization step: 2074. Total energy = 5902.7078 kcal/mol (5901.2715 without restraints) Performing minimization step: 2075. Total energy = 5899.9384 kcal/mol (5898.5026 without restraints) Performing minimization step: 2076. Total energy = 5897.1718 kcal/mol (5895.7365 without restraints) Performing minimization step: 2077. Total energy = 5894.4075 kcal/mol (5892.9727 without restraints) Performing minimization step: 2078. Total energy = 5891.6459 kcal/mol (5890.2115 without restraints) Performing minimization step: 2079. Total energy = 5888.8865 kcal/mol (5887.4526 without restraints) Performing minimization step: 2080. Total energy = 5886.1300 kcal/mol (5884.6966 without restraints) Performing minimization step: 2081. Total energy = 5883.3760 kcal/mol (5881.9431 without restraints) Performing minimization step: 2082. Total energy = 5880.6246 kcal/mol (5879.1921 without restraints) Performing minimization step: 2083. Total energy = 5877.8757 kcal/mol (5876.4438 without restraints) Performing minimization step: 2084. Total energy = 5875.1296 kcal/mol (5873.6980 without restraints) Performing minimization step: 2085. Total energy = 5872.3858 kcal/mol (5870.9548 without restraints) Performing minimization step: 2086. Total energy = 5869.6450 kcal/mol (5868.2144 without restraints) Performing minimization step: 2087. Total energy = 5866.9063 kcal/mol (5865.4763 without restraints) Performing minimization step: 2088. Total energy = 5864.1702 kcal/mol (5862.7406 without restraints) Performing minimization step: 2089. Total energy = 5861.4367 kcal/mol (5860.0076 without restraints) Performing minimization step: 2090. Total energy = 5858.7057 kcal/mol (5857.2771 without restraints) Performing minimization step: 2091. Total energy = 5855.9773 kcal/mol (5854.5491 without restraints) Performing minimization step: 2092. Total energy = 5853.2514 kcal/mol (5851.8237 without restraints) Performing minimization step: 2093. Total energy = 5850.5282 kcal/mol (5849.1010 without restraints) Performing minimization step: 2094. Total energy = 5847.8076 kcal/mol (5846.3809 without restraints) Performing minimization step: 2095. Total energy = 5845.0894 kcal/mol (5843.6631 without restraints) Performing minimization step: 2096. Total energy = 5842.3737 kcal/mol (5840.9479 without restraints) Performing minimization step: 2097. Total energy = 5839.6608 kcal/mol (5838.2354 without restraints) Performing minimization step: 2098. Total energy = 5836.9501 kcal/mol (5835.5253 without restraints) Performing minimization step: 2099. Total energy = 5834.2420 kcal/mol (5832.8177 without restraints) Performing minimization step: 2100. Total energy = 5831.5364 kcal/mol (5830.1125 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 5828.8331 kcal/mol (5827.4095 without restraints) Performing minimization step: 2102. Total energy = 5826.1325 kcal/mol (5824.7095 without restraints) Performing minimization step: 2103. Total energy = 5823.4343 kcal/mol (5822.0118 without restraints) Performing minimization step: 2104. Total energy = 5820.7388 kcal/mol (5819.3168 without restraints) Performing minimization step: 2105. Total energy = 5818.0457 kcal/mol (5816.6242 without restraints) Performing minimization step: 2106. Total energy = 5815.3553 kcal/mol (5813.9343 without restraints) Performing minimization step: 2107. Total energy = 5812.6674 kcal/mol (5811.2468 without restraints) Performing minimization step: 2108. Total energy = 5809.9820 kcal/mol (5808.5619 without restraints) Performing minimization step: 2109. Total energy = 5807.2991 kcal/mol (5805.8795 without restraints) Performing minimization step: 2110. Total energy = 5804.6187 kcal/mol (5803.1996 without restraints) Performing minimization step: 2111. Total energy = 5801.9410 kcal/mol (5800.5223 without restraints) Performing minimization step: 2112. Total energy = 5799.2657 kcal/mol (5797.8475 without restraints) Performing minimization step: 2113. Total energy = 5796.5929 kcal/mol (5795.1752 without restraints) Performing minimization step: 2114. Total energy = 5793.9226 kcal/mol (5792.5053 without restraints) Performing minimization step: 2115. Total energy = 5791.2544 kcal/mol (5789.8376 without restraints) Performing minimization step: 2116. Total energy = 5788.5891 kcal/mol (5787.1728 without restraints) Performing minimization step: 2117. Total energy = 5785.9263 kcal/mol (5784.5105 without restraints) Performing minimization step: 2118. Total energy = 5783.2661 kcal/mol (5781.8507 without restraints) Performing minimization step: 2119. Total energy = 5780.6083 kcal/mol (5779.1934 without restraints) Performing minimization step: 2120. Total energy = 5777.9528 kcal/mol (5776.5384 without restraints) Performing minimization step: 2121. Total energy = 5775.3000 kcal/mol (5773.8861 without restraints) Performing minimization step: 2122. Total energy = 5772.6497 kcal/mol (5771.2362 without restraints) Performing minimization step: 2123. Total energy = 5770.0019 kcal/mol (5768.5889 without restraints) Performing minimization step: 2124. Total energy = 5767.3566 kcal/mol (5765.9441 without restraints) Performing minimization step: 2125. Total energy = 5764.7141 kcal/mol (5763.3021 without restraints) Performing minimization step: 2126. Total energy = 5762.0738 kcal/mol (5760.6622 without restraints) Performing minimization step: 2127. Total energy = 5759.4360 kcal/mol (5758.0249 without restraints) Performing minimization step: 2128. Total energy = 5756.8006 kcal/mol (5755.3900 without restraints) Performing minimization step: 2129. Total energy = 5754.1677 kcal/mol (5752.7576 without restraints) Performing minimization step: 2130. Total energy = 5751.5374 kcal/mol (5750.1277 without restraints) Performing minimization step: 2131. Total energy = 5748.9095 kcal/mol (5747.5002 without restraints) Performing minimization step: 2132. Total energy = 5746.2840 kcal/mol (5744.8753 without restraints) Performing minimization step: 2133. Total energy = 5743.6610 kcal/mol (5742.2526 without restraints) Performing minimization step: 2134. Total energy = 5741.0403 kcal/mol (5739.6326 without restraints) Performing minimization step: 2135. Total energy = 5738.4223 kcal/mol (5737.0150 without restraints) Performing minimization step: 2136. Total energy = 5735.8068 kcal/mol (5734.3999 without restraints) Performing minimization step: 2137. Total energy = 5733.1937 kcal/mol (5731.7874 without restraints) Performing minimization step: 2138. Total energy = 5730.5831 kcal/mol (5729.1772 without restraints) Performing minimization step: 2139. Total energy = 5727.9750 kcal/mol (5726.5696 without restraints) Performing minimization step: 2140. Total energy = 5725.3693 kcal/mol (5723.9644 without restraints) Performing minimization step: 2141. Total energy = 5722.7661 kcal/mol (5721.3617 without restraints) Performing minimization step: 2142. Total energy = 5720.1654 kcal/mol (5718.7614 without restraints) Performing minimization step: 2143. Total energy = 5717.5672 kcal/mol (5716.1636 without restraints) Performing minimization step: 2144. Total energy = 5714.9716 kcal/mol (5713.5685 without restraints) Performing minimization step: 2145. Total energy = 5712.3782 kcal/mol (5710.9756 without restraints) Performing minimization step: 2146. Total energy = 5709.7873 kcal/mol (5708.3852 without restraints) Performing minimization step: 2147. Total energy = 5707.1988 kcal/mol (5705.7972 without restraints) Performing minimization step: 2148. Total energy = 5704.6128 kcal/mol (5703.2117 without restraints) Performing minimization step: 2149. Total energy = 5702.0293 kcal/mol (5700.6286 without restraints) Performing minimization step: 2150. Total energy = 5699.4482 kcal/mol (5698.0480 without restraints) Performing minimization step: 2151. Total energy = 5696.8695 kcal/mol (5695.4698 without restraints) Performing minimization step: 2152. Total energy = 5694.2933 kcal/mol (5692.8940 without restraints) Performing minimization step: 2153. Total energy = 5691.7195 kcal/mol (5690.3207 without restraints) Performing minimization step: 2154. Total energy = 5689.1482 kcal/mol (5687.7499 without restraints) Performing minimization step: 2155. Total energy = 5686.5795 kcal/mol (5685.1817 without restraints) Performing minimization step: 2156. Total energy = 5684.0129 kcal/mol (5682.6155 without restraints) Performing minimization step: 2157. Total energy = 5681.4492 kcal/mol (5680.0523 without restraints) Performing minimization step: 2158. Total energy = 5678.8876 kcal/mol (5677.4912 without restraints) Performing minimization step: 2159. Total energy = 5676.3284 kcal/mol (5674.9325 without restraints) Performing minimization step: 2160. Total energy = 5673.7719 kcal/mol (5672.3764 without restraints) Performing minimization step: 2161. Total energy = 5671.2176 kcal/mol (5669.8226 without restraints) Performing minimization step: 2162. Total energy = 5668.6658 kcal/mol (5667.2713 without restraints) Performing minimization step: 2163. Total energy = 5666.1169 kcal/mol (5664.7229 without restraints) Performing minimization step: 2164. Total energy = 5663.5702 kcal/mol (5662.1768 without restraints) Performing minimization step: 2165. Total energy = 5661.0258 kcal/mol (5659.6327 without restraints) Performing minimization step: 2166. Total energy = 5658.4839 kcal/mol (5657.0912 without restraints) Performing minimization step: 2167. Total energy = 5655.9445 kcal/mol (5654.5523 without restraints) Performing minimization step: 2168. Total energy = 5653.4072 kcal/mol (5652.0155 without restraints) Performing minimization step: 2169. Total energy = 5650.8723 kcal/mol (5649.4810 without restraints) Performing minimization step: 2170. Total energy = 5648.3398 kcal/mol (5646.9490 without restraints) Performing minimization step: 2171. Total energy = 5645.8097 kcal/mol (5644.4194 without restraints) Performing minimization step: 2172. Total energy = 5643.2820 kcal/mol (5641.8921 without restraints) Performing minimization step: 2173. Total energy = 5640.7569 kcal/mol (5639.3675 without restraints) Performing minimization step: 2174. Total energy = 5638.2340 kcal/mol (5636.8451 without restraints) Performing minimization step: 2175. Total energy = 5635.7136 kcal/mol (5634.3252 without restraints) Performing minimization step: 2176. Total energy = 5633.1959 kcal/mol (5631.8078 without restraints) Performing minimization step: 2177. Total energy = 5630.6802 kcal/mol (5629.2927 without restraints) Performing minimization step: 2178. Total energy = 5628.1669 kcal/mol (5626.7799 without restraints) Performing minimization step: 2179. Total energy = 5625.6566 kcal/mol (5624.2702 without restraints) Performing minimization step: 2180. Total energy = 5623.1482 kcal/mol (5621.7622 without restraints) Performing minimization step: 2181. Total energy = 5620.6427 kcal/mol (5619.2571 without restraints) Performing minimization step: 2182. Total energy = 5618.1390 kcal/mol (5616.7539 without restraints) Performing minimization step: 2183. Total energy = 5615.6377 kcal/mol (5614.2531 without restraints) Performing minimization step: 2184. Total energy = 5613.1388 kcal/mol (5611.7546 without restraints) Performing minimization step: 2185. Total energy = 5610.6423 kcal/mol (5609.2586 without restraints) Performing minimization step: 2186. Total energy = 5608.1482 kcal/mol (5606.7649 without restraints) Performing minimization step: 2187. Total energy = 5605.6564 kcal/mol (5604.2736 without restraints) Performing minimization step: 2188. Total energy = 5603.1670 kcal/mol (5601.7847 without restraints) Performing minimization step: 2189. Total energy = 5600.6803 kcal/mol (5599.2985 without restraints) Performing minimization step: 2190. Total energy = 5598.1956 kcal/mol (5596.8143 without restraints) Performing minimization step: 2191. Total energy = 5595.7134 kcal/mol (5594.3325 without restraints) Performing minimization step: 2192. Total energy = 5593.2338 kcal/mol (5591.8534 without restraints) Performing minimization step: 2193. Total energy = 5590.7563 kcal/mol (5589.3764 without restraints) Performing minimization step: 2194. Total energy = 5588.2814 kcal/mol (5586.9019 without restraints) Performing minimization step: 2195. Total energy = 5585.8087 kcal/mol (5584.4297 without restraints) Performing minimization step: 2196. Total energy = 5583.3383 kcal/mol (5581.9598 without restraints) Performing minimization step: 2197. Total energy = 5580.8703 kcal/mol (5579.4922 without restraints) Performing minimization step: 2198. Total energy = 5578.4046 kcal/mol (5577.0271 without restraints) Performing minimization step: 2199. Total energy = 5575.9413 kcal/mol (5574.5642 without restraints) Performing minimization step: 2200. Total energy = 5573.4804 kcal/mol (5572.1038 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 5571.0218 kcal/mol (5569.6457 without restraints) Performing minimization step: 2202. Total energy = 5568.5657 kcal/mol (5567.1900 without restraints) Performing minimization step: 2203. Total energy = 5566.1118 kcal/mol (5564.7366 without restraints) Performing minimization step: 2204. Total energy = 5563.6603 kcal/mol (5562.2856 without restraints) Performing minimization step: 2205. Total energy = 5561.2115 kcal/mol (5559.8373 without restraints) Performing minimization step: 2206. Total energy = 5558.7647 kcal/mol (5557.3910 without restraints) Performing minimization step: 2207. Total energy = 5556.3205 kcal/mol (5554.9472 without restraints) Performing minimization step: 2208. Total energy = 5553.8784 kcal/mol (5552.5056 without restraints) Performing minimization step: 2209. Total energy = 5551.4386 kcal/mol (5550.0663 without restraints) Performing minimization step: 2210. Total energy = 5549.0012 kcal/mol (5547.6293 without restraints) Performing minimization step: 2211. Total energy = 5546.5662 kcal/mol (5545.1948 without restraints) Performing minimization step: 2212. Total energy = 5544.1331 kcal/mol (5542.7621 without restraints) Performing minimization step: 2213. Total energy = 5541.7025 kcal/mol (5540.3319 without restraints) Performing minimization step: 2214. Total energy = 5539.2744 kcal/mol (5537.9044 without restraints) Performing minimization step: 2215. Total energy = 5536.8489 kcal/mol (5535.4794 without restraints) Performing minimization step: 2216. Total energy = 5534.4258 kcal/mol (5533.0567 without restraints) Performing minimization step: 2217. Total energy = 5532.0048 kcal/mol (5530.6362 without restraints) Performing minimization step: 2218. Total energy = 5529.5863 kcal/mol (5528.2181 without restraints) Performing minimization step: 2219. Total energy = 5527.1699 kcal/mol (5525.8023 without restraints) Performing minimization step: 2220. Total energy = 5524.7558 kcal/mol (5523.3887 without restraints) Performing minimization step: 2221. Total energy = 5522.3441 kcal/mol (5520.9774 without restraints) Performing minimization step: 2222. Total energy = 5519.9349 kcal/mol (5518.5686 without restraints) Performing minimization step: 2223. Total energy = 5517.5278 kcal/mol (5516.1620 without restraints) Performing minimization step: 2224. Total energy = 5515.1232 kcal/mol (5513.7579 without restraints) Performing minimization step: 2225. Total energy = 5512.7210 kcal/mol (5511.3561 without restraints) Performing minimization step: 2226. Total energy = 5510.3208 kcal/mol (5508.9565 without restraints) Performing minimization step: 2227. Total energy = 5507.9230 kcal/mol (5506.5591 without restraints) Performing minimization step: 2228. Total energy = 5505.5276 kcal/mol (5504.1641 without restraints) Performing minimization step: 2229. Total energy = 5503.1343 kcal/mol (5501.7713 without restraints) Performing minimization step: 2230. Total energy = 5500.7434 kcal/mol (5499.3809 without restraints) Performing minimization step: 2231. Total energy = 5498.3548 kcal/mol (5496.9928 without restraints) Performing minimization step: 2232. Total energy = 5495.9686 kcal/mol (5494.6071 without restraints) Performing minimization step: 2233. Total energy = 5493.5847 kcal/mol (5492.2236 without restraints) Performing minimization step: 2234. Total energy = 5491.2030 kcal/mol (5489.8424 without restraints) Performing minimization step: 2235. Total energy = 5488.8235 kcal/mol (5487.4632 without restraints) Performing minimization step: 2236. Total energy = 5486.4465 kcal/mol (5485.0869 without restraints) Performing minimization step: 2237. Total energy = 5484.0717 kcal/mol (5482.7125 without restraints) Performing minimization step: 2238. Total energy = 5481.6994 kcal/mol (5480.3406 without restraints) Performing minimization step: 2239. Total energy = 5479.3289 kcal/mol (5477.9707 without restraints) Performing minimization step: 2240. Total energy = 5476.9610 kcal/mol (5475.6032 without restraints) Performing minimization step: 2241. Total energy = 5474.5954 kcal/mol (5473.2382 without restraints) Performing minimization step: 2242. Total energy = 5472.2322 kcal/mol (5470.8753 without restraints) Performing minimization step: 2243. Total energy = 5469.8711 kcal/mol (5468.5148 without restraints) Performing minimization step: 2244. Total energy = 5467.5124 kcal/mol (5466.1565 without restraints) Performing minimization step: 2245. Total energy = 5465.1561 kcal/mol (5463.8006 without restraints) Performing minimization step: 2246. Total energy = 5462.8019 kcal/mol (5461.4471 without restraints) Performing minimization step: 2247. Total energy = 5460.4501 kcal/mol (5459.0956 without restraints) Performing minimization step: 2248. Total energy = 5458.1004 kcal/mol (5456.7464 without restraints) Performing minimization step: 2249. Total energy = 5455.7530 kcal/mol (5454.3995 without restraints) Performing minimization step: 2250. Total energy = 5453.4079 kcal/mol (5452.0548 without restraints) Performing minimization step: 2251. Total energy = 5451.0651 kcal/mol (5449.7125 without restraints) Performing minimization step: 2252. Total energy = 5448.7245 kcal/mol (5447.3723 without restraints) Performing minimization step: 2253. Total energy = 5446.3862 kcal/mol (5445.0345 without restraints) Performing minimization step: 2254. Total energy = 5444.0503 kcal/mol (5442.6991 without restraints) Performing minimization step: 2255. Total energy = 5441.7165 kcal/mol (5440.3658 without restraints) Performing minimization step: 2256. Total energy = 5439.3849 kcal/mol (5438.0347 without restraints) Performing minimization step: 2257. Total energy = 5437.0555 kcal/mol (5435.7057 without restraints) Performing minimization step: 2258. Total energy = 5434.7284 kcal/mol (5433.3791 without restraints) Performing minimization step: 2259. Total energy = 5432.4037 kcal/mol (5431.0549 without restraints) Performing minimization step: 2260. Total energy = 5430.0813 kcal/mol (5428.7329 without restraints) Performing minimization step: 2261. Total energy = 5427.7610 kcal/mol (5426.4131 without restraints) Performing minimization step: 2262. Total energy = 5425.4432 kcal/mol (5424.0958 without restraints) Performing minimization step: 2263. Total energy = 5423.1274 kcal/mol (5421.7805 without restraints) Performing minimization step: 2264. Total energy = 5420.8139 kcal/mol (5419.4674 without restraints) Performing minimization step: 2265. Total energy = 5418.5027 kcal/mol (5417.1567 without restraints) Performing minimization step: 2266. Total energy = 5416.1937 kcal/mol (5414.8481 without restraints) Performing minimization step: 2267. Total energy = 5413.8869 kcal/mol (5412.5418 without restraints) Performing minimization step: 2268. Total energy = 5411.5824 kcal/mol (5410.2377 without restraints) Performing minimization step: 2269. Total energy = 5409.2797 kcal/mol (5407.9356 without restraints) Performing minimization step: 2270. Total energy = 5406.9798 kcal/mol (5405.6362 without restraints) Performing minimization step: 2271. Total energy = 5404.6821 kcal/mol (5403.3389 without restraints) Performing minimization step: 2272. Total energy = 5402.3865 kcal/mol (5401.0437 without restraints) Performing minimization step: 2273. Total energy = 5400.0931 kcal/mol (5398.7508 without restraints) Performing minimization step: 2274. Total energy = 5397.8021 kcal/mol (5396.4604 without restraints) Performing minimization step: 2275. Total energy = 5395.5131 kcal/mol (5394.1718 without restraints) Performing minimization step: 2276. Total energy = 5393.2264 kcal/mol (5391.8855 without restraints) Performing minimization step: 2277. Total energy = 5390.9419 kcal/mol (5389.6016 without restraints) Performing minimization step: 2278. Total energy = 5388.6595 kcal/mol (5387.3195 without restraints) Performing minimization step: 2279. Total energy = 5386.3794 kcal/mol (5385.0399 without restraints) Performing minimization step: 2280. Total energy = 5384.1016 kcal/mol (5382.7626 without restraints) Performing minimization step: 2281. Total energy = 5381.8260 kcal/mol (5380.4875 without restraints) Performing minimization step: 2282. Total energy = 5379.5526 kcal/mol (5378.2146 without restraints) Performing minimization step: 2283. Total energy = 5377.2814 kcal/mol (5375.9438 without restraints) Performing minimization step: 2284. Total energy = 5375.0124 kcal/mol (5373.6753 without restraints) Performing minimization step: 2285. Total energy = 5372.7457 kcal/mol (5371.4091 without restraints) Performing minimization step: 2286. Total energy = 5370.4811 kcal/mol (5369.1450 without restraints) Performing minimization step: 2287. Total energy = 5368.2188 kcal/mol (5366.8831 without restraints) Performing minimization step: 2288. Total energy = 5365.9587 kcal/mol (5364.6235 without restraints) Performing minimization step: 2289. Total energy = 5363.7007 kcal/mol (5362.3660 without restraints) Performing minimization step: 2290. Total energy = 5361.4450 kcal/mol (5360.1107 without restraints) Performing minimization step: 2291. Total energy = 5359.1914 kcal/mol (5357.8576 without restraints) Performing minimization step: 2292. Total energy = 5356.9400 kcal/mol (5355.6067 without restraints) Performing minimization step: 2293. Total energy = 5354.6909 kcal/mol (5353.3580 without restraints) Performing minimization step: 2294. Total energy = 5352.4439 kcal/mol (5351.1115 without restraints) Performing minimization step: 2295. Total energy = 5350.1991 kcal/mol (5348.8672 without restraints) Performing minimization step: 2296. Total energy = 5347.9564 kcal/mol (5346.6250 without restraints) Performing minimization step: 2297. Total energy = 5345.7158 kcal/mol (5344.3848 without restraints) Performing minimization step: 2298. Total energy = 5343.4774 kcal/mol (5342.1469 without restraints) Performing minimization step: 2299. Total energy = 5341.2413 kcal/mol (5339.9113 without restraints) Performing minimization step: 2300. Total energy = 5339.0074 kcal/mol (5337.6779 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 5336.7757 kcal/mol (5335.4466 without restraints) Performing minimization step: 2302. Total energy = 5334.5462 kcal/mol (5333.2176 without restraints) Performing minimization step: 2303. Total energy = 5332.3188 kcal/mol (5330.9906 without restraints) Performing minimization step: 2304. Total energy = 5330.0936 kcal/mol (5328.7659 without restraints) Performing minimization step: 2305. Total energy = 5327.8706 kcal/mol (5326.5434 without restraints) Performing minimization step: 2306. Total energy = 5325.6497 kcal/mol (5324.3230 without restraints) Performing minimization step: 2307. Total energy = 5323.4312 kcal/mol (5322.1050 without restraints) Performing minimization step: 2308. Total energy = 5321.2147 kcal/mol (5319.8889 without restraints) Performing minimization step: 2309. Total energy = 5319.0004 kcal/mol (5317.6750 without restraints) Performing minimization step: 2310. Total energy = 5316.7884 kcal/mol (5315.4635 without restraints) Performing minimization step: 2311. Total energy = 5314.5783 kcal/mol (5313.2539 without restraints) Performing minimization step: 2312. Total energy = 5312.3708 kcal/mol (5311.0471 without restraints) Performing minimization step: 2313. Total energy = 5310.1653 kcal/mol (5308.8418 without restraints) Performing minimization step: 2314. Total energy = 5307.9615 kcal/mol (5306.6385 without restraints) Performing minimization step: 2315. Total energy = 5305.7601 kcal/mol (5304.4375 without restraints) Performing minimization step: 2316. Total energy = 5303.5610 kcal/mol (5302.2390 without restraints) Performing minimization step: 2317. Total energy = 5301.3639 kcal/mol (5300.0423 without restraints) Performing minimization step: 2318. Total energy = 5299.1691 kcal/mol (5297.8480 without restraints) Performing minimization step: 2319. Total energy = 5296.9763 kcal/mol (5295.6556 without restraints) Performing minimization step: 2320. Total energy = 5294.7856 kcal/mol (5293.4654 without restraints) Performing minimization step: 2321. Total energy = 5292.5970 kcal/mol (5291.2773 without restraints) Performing minimization step: 2322. Total energy = 5290.4105 kcal/mol (5289.0913 without restraints) Performing minimization step: 2323. Total energy = 5288.2262 kcal/mol (5286.9075 without restraints) Performing minimization step: 2324. Total energy = 5286.0441 kcal/mol (5284.7257 without restraints) Performing minimization step: 2325. Total energy = 5283.8640 kcal/mol (5282.5462 without restraints) Performing minimization step: 2326. Total energy = 5281.6861 kcal/mol (5280.3687 without restraints) Performing minimization step: 2327. Total energy = 5279.5103 kcal/mol (5278.1934 without restraints) Performing minimization step: 2328. Total energy = 5277.3366 kcal/mol (5276.0202 without restraints) Performing minimization step: 2329. Total energy = 5275.1647 kcal/mol (5273.8487 without restraints) Performing minimization step: 2330. Total energy = 5272.9952 kcal/mol (5271.6797 without restraints) Performing minimization step: 2331. Total energy = 5270.8279 kcal/mol (5269.5128 without restraints) Performing minimization step: 2332. Total energy = 5268.6627 kcal/mol (5267.3481 without restraints) Performing minimization step: 2333. Total energy = 5266.4996 kcal/mol (5265.1855 without restraints) Performing minimization step: 2334. Total energy = 5264.3387 kcal/mol (5263.0251 without restraints) Performing minimization step: 2335. Total energy = 5262.1798 kcal/mol (5260.8667 without restraints) Performing minimization step: 2336. Total energy = 5260.0234 kcal/mol (5258.7107 without restraints) Performing minimization step: 2337. Total energy = 5257.8687 kcal/mol (5256.5565 without restraints) Performing minimization step: 2338. Total energy = 5255.7162 kcal/mol (5254.4044 without restraints) Performing minimization step: 2339. Total energy = 5253.5661 kcal/mol (5252.2550 without restraints) Performing minimization step: 2340. Total energy = 5251.4179 kcal/mol (5250.1071 without restraints) Performing minimization step: 2341. Total energy = 5249.2717 kcal/mol (5247.9614 without restraints) Performing minimization step: 2342. Total energy = 5247.1276 kcal/mol (5245.8177 without restraints) Performing minimization step: 2343. Total energy = 5244.9855 kcal/mol (5243.6761 without restraints) Performing minimization step: 2344. Total energy = 5242.8456 kcal/mol (5241.5367 without restraints) Performing minimization step: 2345. Total energy = 5240.7078 kcal/mol (5239.3993 without restraints) Performing minimization step: 2346. Total energy = 5238.5720 kcal/mol (5237.2640 without restraints) Performing minimization step: 2347. Total energy = 5236.4383 kcal/mol (5235.1308 without restraints) Performing minimization step: 2348. Total energy = 5234.3067 kcal/mol (5232.9997 without restraints) Performing minimization step: 2349. Total energy = 5232.1772 kcal/mol (5230.8706 without restraints) Performing minimization step: 2350. Total energy = 5230.0498 kcal/mol (5228.7437 without restraints) Performing minimization step: 2351. Total energy = 5227.9245 kcal/mol (5226.6188 without restraints) Performing minimization step: 2352. Total energy = 5225.8012 kcal/mol (5224.4960 without restraints) Performing minimization step: 2353. Total energy = 5223.6800 kcal/mol (5222.3753 without restraints) Performing minimization step: 2354. Total energy = 5221.5607 kcal/mol (5220.2564 without restraints) Performing minimization step: 2355. Total energy = 5219.4436 kcal/mol (5218.1398 without restraints) Performing minimization step: 2356. Total energy = 5217.3287 kcal/mol (5216.0254 without restraints) Performing minimization step: 2357. Total energy = 5215.2158 kcal/mol (5213.9130 without restraints) Performing minimization step: 2358. Total energy = 5213.1052 kcal/mol (5211.8028 without restraints) Performing minimization step: 2359. Total energy = 5210.9966 kcal/mol (5209.6947 without restraints) Performing minimization step: 2360. Total energy = 5208.8898 kcal/mol (5207.5884 without restraints) Performing minimization step: 2361. Total energy = 5206.7851 kcal/mol (5205.4842 without restraints) Performing minimization step: 2362. Total energy = 5204.6824 kcal/mol (5203.3819 without restraints) Performing minimization step: 2363. Total energy = 5202.5819 kcal/mol (5201.2818 without restraints) Performing minimization step: 2364. Total energy = 5200.4833 kcal/mol (5199.1838 without restraints) Performing minimization step: 2365. Total energy = 5198.3868 kcal/mol (5197.0877 without restraints) Performing minimization step: 2366. Total energy = 5196.2924 kcal/mol (5194.9938 without restraints) Performing minimization step: 2367. Total energy = 5194.2000 kcal/mol (5192.9018 without restraints) Performing minimization step: 2368. Total energy = 5192.1097 kcal/mol (5190.8120 without restraints) Performing minimization step: 2369. Total energy = 5190.0210 kcal/mol (5188.7238 without restraints) Performing minimization step: 2370. Total energy = 5187.9349 kcal/mol (5186.6381 without restraints) Performing minimization step: 2371. Total energy = 5185.8506 kcal/mol (5184.5543 without restraints) Performing minimization step: 2372. Total energy = 5183.7684 kcal/mol (5182.4726 without restraints) Performing minimization step: 2373. Total energy = 5181.6887 kcal/mol (5180.3933 without restraints) Performing minimization step: 2374. Total energy = 5179.6106 kcal/mol (5178.3157 without restraints) Performing minimization step: 2375. Total energy = 5177.5347 kcal/mol (5176.2403 without restraints) Performing minimization step: 2376. Total energy = 5175.4606 kcal/mol (5174.1667 without restraints) Performing minimization step: 2377. Total energy = 5173.3886 kcal/mol (5172.0951 without restraints) Performing minimization step: 2378. Total energy = 5171.3186 kcal/mol (5170.0256 without restraints) Performing minimization step: 2379. Total energy = 5169.2506 kcal/mol (5167.9580 without restraints) Performing minimization step: 2380. Total energy = 5167.1846 kcal/mol (5165.8925 without restraints) Performing minimization step: 2381. Total energy = 5165.1206 kcal/mol (5163.8290 without restraints) Performing minimization step: 2382. Total energy = 5163.0587 kcal/mol (5161.7675 without restraints) Performing minimization step: 2383. Total energy = 5160.9987 kcal/mol (5159.7081 without restraints) Performing minimization step: 2384. Total energy = 5158.9408 kcal/mol (5157.6506 without restraints) Performing minimization step: 2385. Total energy = 5156.8847 kcal/mol (5155.5949 without restraints) Performing minimization step: 2386. Total energy = 5154.8308 kcal/mol (5153.5415 without restraints) Performing minimization step: 2387. Total energy = 5152.7787 kcal/mol (5151.4899 without restraints) Performing minimization step: 2388. Total energy = 5150.7288 kcal/mol (5149.4404 without restraints) Performing minimization step: 2389. Total energy = 5148.6813 kcal/mol (5147.3934 without restraints) Performing minimization step: 2390. Total energy = 5146.6354 kcal/mol (5145.3479 without restraints) Performing minimization step: 2391. Total energy = 5144.5915 kcal/mol (5143.3045 without restraints) Performing minimization step: 2392. Total energy = 5142.5494 kcal/mol (5141.2629 without restraints) Performing minimization step: 2393. Total energy = 5140.5093 kcal/mol (5139.2233 without restraints) Performing minimization step: 2394. Total energy = 5138.4713 kcal/mol (5137.1857 without restraints) Performing minimization step: 2395. Total energy = 5136.4352 kcal/mol (5135.1502 without restraints) Performing minimization step: 2396. Total energy = 5134.4013 kcal/mol (5133.1167 without restraints) Performing minimization step: 2397. Total energy = 5132.3693 kcal/mol (5131.0852 without restraints) Performing minimization step: 2398. Total energy = 5130.3395 kcal/mol (5129.0559 without restraints) Performing minimization step: 2399. Total energy = 5128.3115 kcal/mol (5127.0283 without restraints) Performing minimization step: 2400. Total energy = 5126.2853 kcal/mol (5125.0026 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 5124.2613 kcal/mol (5122.9790 without restraints) Performing minimization step: 2402. Total energy = 5122.2392 kcal/mol (5120.9574 without restraints) Performing minimization step: 2403. Total energy = 5120.2190 kcal/mol (5118.9376 without restraints) Performing minimization step: 2404. Total energy = 5118.2008 kcal/mol (5116.9200 without restraints) Performing minimization step: 2405. Total energy = 5116.1846 kcal/mol (5114.9042 without restraints) Performing minimization step: 2406. Total energy = 5114.1706 kcal/mol (5112.8907 without restraints) Performing minimization step: 2407. Total energy = 5112.1582 kcal/mol (5110.8787 without restraints) Performing minimization step: 2408. Total energy = 5110.1479 kcal/mol (5108.8689 without restraints) Performing minimization step: 2409. Total energy = 5108.1396 kcal/mol (5106.8610 without restraints) Performing minimization step: 2410. Total energy = 5106.1327 kcal/mol (5104.8547 without restraints) Performing minimization step: 2411. Total energy = 5104.1283 kcal/mol (5102.8507 without restraints) Performing minimization step: 2412. Total energy = 5102.1259 kcal/mol (5100.8488 without restraints) Performing minimization step: 2413. Total energy = 5100.1254 kcal/mol (5098.8487 without restraints) Performing minimization step: 2414. Total energy = 5098.1268 kcal/mol (5096.8506 without restraints) Performing minimization step: 2415. Total energy = 5096.1300 kcal/mol (5094.8543 without restraints) Performing minimization step: 2416. Total energy = 5094.1353 kcal/mol (5092.8601 without restraints) Performing minimization step: 2417. Total energy = 5092.1426 kcal/mol (5090.8678 without restraints) Performing minimization step: 2418. Total energy = 5090.1516 kcal/mol (5088.8773 without restraints) Performing minimization step: 2419. Total energy = 5088.1627 kcal/mol (5086.8889 without restraints) Performing minimization step: 2420. Total energy = 5086.1757 kcal/mol (5084.9023 without restraints) Performing minimization step: 2421. Total energy = 5084.1907 kcal/mol (5082.9178 without restraints) Performing minimization step: 2422. Total energy = 5082.2076 kcal/mol (5080.9352 without restraints) Performing minimization step: 2423. Total energy = 5080.2267 kcal/mol (5078.9548 without restraints) Performing minimization step: 2424. Total energy = 5078.2476 kcal/mol (5076.9760 without restraints) Performing minimization step: 2425. Total energy = 5076.2700 kcal/mol (5074.9990 without restraints) Performing minimization step: 2426. Total energy = 5074.2947 kcal/mol (5073.0241 without restraints) Performing minimization step: 2427. Total energy = 5072.3210 kcal/mol (5071.0509 without restraints) Performing minimization step: 2428. Total energy = 5070.3495 kcal/mol (5069.0799 without restraints) Performing minimization step: 2429. Total energy = 5068.3800 kcal/mol (5067.1108 without restraints) Performing minimization step: 2430. Total energy = 5066.4123 kcal/mol (5065.1436 without restraints) Performing minimization step: 2431. Total energy = 5064.4467 kcal/mol (5063.1785 without restraints) Performing minimization step: 2432. Total energy = 5062.4825 kcal/mol (5061.2147 without restraints) Performing minimization step: 2433. Total energy = 5060.5206 kcal/mol (5059.2532 without restraints) Performing minimization step: 2434. Total energy = 5058.5603 kcal/mol (5057.2935 without restraints) Performing minimization step: 2435. Total energy = 5056.6023 kcal/mol (5055.3359 without restraints) Performing minimization step: 2436. Total energy = 5054.6461 kcal/mol (5053.3802 without restraints) Performing minimization step: 2437. Total energy = 5052.6916 kcal/mol (5051.4260 without restraints) Performing minimization step: 2438. Total energy = 5050.7390 kcal/mol (5049.4740 without restraints) Performing minimization step: 2439. Total energy = 5048.7885 kcal/mol (5047.5240 without restraints) Performing minimization step: 2440. Total energy = 5046.8398 kcal/mol (5045.5758 without restraints) Performing minimization step: 2441. Total energy = 5044.8930 kcal/mol (5043.6293 without restraints) Performing minimization step: 2442. Total energy = 5042.9481 kcal/mol (5041.6850 without restraints) Performing minimization step: 2443. Total energy = 5041.0052 kcal/mol (5039.7425 without restraints) Performing minimization step: 2444. Total energy = 5039.0639 kcal/mol (5037.8017 without restraints) Performing minimization step: 2445. Total energy = 5037.1247 kcal/mol (5035.8630 without restraints) Performing minimization step: 2446. Total energy = 5035.1874 kcal/mol (5033.9262 without restraints) Performing minimization step: 2447. Total energy = 5033.2522 kcal/mol (5031.9914 without restraints) Performing minimization step: 2448. Total energy = 5031.3186 kcal/mol (5030.0583 without restraints) Performing minimization step: 2449. Total energy = 5029.3870 kcal/mol (5028.1272 without restraints) Performing minimization step: 2450. Total energy = 5027.4572 kcal/mol (5026.1979 without restraints) Performing minimization step: 2451. Total energy = 5025.5293 kcal/mol (5024.2704 without restraints) Performing minimization step: 2452. Total energy = 5023.6033 kcal/mol (5022.3449 without restraints) Performing minimization step: 2453. Total energy = 5021.6789 kcal/mol (5020.4209 without restraints) Performing minimization step: 2454. Total energy = 5019.7566 kcal/mol (5018.4991 without restraints) Performing minimization step: 2455. Total energy = 5017.8358 kcal/mol (5016.5787 without restraints) Performing minimization step: 2456. Total energy = 5015.9171 kcal/mol (5014.6605 without restraints) Performing minimization step: 2457. Total energy = 5014.0004 kcal/mol (5012.7443 without restraints) Performing minimization step: 2458. Total energy = 5012.0857 kcal/mol (5010.8301 without restraints) Performing minimization step: 2459. Total energy = 5010.1729 kcal/mol (5008.9178 without restraints) Performing minimization step: 2460. Total energy = 5008.2618 kcal/mol (5007.0071 without restraints) Performing minimization step: 2461. Total energy = 5006.3526 kcal/mol (5005.0984 without restraints) Performing minimization step: 2462. Total energy = 5004.4454 kcal/mol (5003.1917 without restraints) Performing minimization step: 2463. Total energy = 5002.5400 kcal/mol (5001.2867 without restraints) Performing minimization step: 2464. Total energy = 5000.6362 kcal/mol (4999.3832 without restraints) Performing minimization step: 2465. Total energy = 4998.7342 kcal/mol (4997.4820 without restraints) Performing minimization step: 2466. Total energy = 4996.8343 kcal/mol (4995.5824 without restraints) Performing minimization step: 2467. Total energy = 4994.9360 kcal/mol (4993.6846 without restraints) Performing minimization step: 2468. Total energy = 4993.0396 kcal/mol (4991.7886 without restraints) Performing minimization step: 2469. Total energy = 4991.1450 kcal/mol (4989.8945 without restraints) Performing minimization step: 2470. Total energy = 4989.2523 kcal/mol (4988.0024 without restraints) Performing minimization step: 2471. Total energy = 4987.3614 kcal/mol (4986.1117 without restraints) Performing minimization step: 2472. Total energy = 4985.4722 kcal/mol (4984.2231 without restraints) Performing minimization step: 2473. Total energy = 4983.5851 kcal/mol (4982.3365 without restraints) Performing minimization step: 2474. Total energy = 4981.7004 kcal/mol (4980.4522 without restraints) Performing minimization step: 2475. Total energy = 4979.8166 kcal/mol (4978.5689 without restraints) Performing minimization step: 2476. Total energy = 4977.9348 kcal/mol (4976.6876 without restraints) Performing minimization step: 2477. Total energy = 4976.0548 kcal/mol (4974.8080 without restraints) Performing minimization step: 2478. Total energy = 4974.1766 kcal/mol (4972.9303 without restraints) Performing minimization step: 2479. Total energy = 4972.3003 kcal/mol (4971.0544 without restraints) Performing minimization step: 2480. Total energy = 4970.4258 kcal/mol (4969.1804 without restraints) Performing minimization step: 2481. Total energy = 4968.5531 kcal/mol (4967.3082 without restraints) Performing minimization step: 2482. Total energy = 4966.6821 kcal/mol (4965.4377 without restraints) Performing minimization step: 2483. Total energy = 4964.8132 kcal/mol (4963.5692 without restraints) Performing minimization step: 2484. Total energy = 4962.9459 kcal/mol (4961.7024 without restraints) Performing minimization step: 2485. Total energy = 4961.0804 kcal/mol (4959.8374 without restraints) Performing minimization step: 2486. Total energy = 4959.2167 kcal/mol (4957.9741 without restraints) Performing minimization step: 2487. Total energy = 4957.3547 kcal/mol (4956.1126 without restraints) Performing minimization step: 2488. Total energy = 4955.4946 kcal/mol (4954.2530 without restraints) Performing minimization step: 2489. Total energy = 4953.6363 kcal/mol (4952.3951 without restraints) Performing minimization step: 2490. Total energy = 4951.7797 kcal/mol (4950.5390 without restraints) Performing minimization step: 2491. Total energy = 4949.9249 kcal/mol (4948.6847 without restraints) Performing minimization step: 2492. Total energy = 4948.0719 kcal/mol (4946.8320 without restraints) Performing minimization step: 2493. Total energy = 4946.2206 kcal/mol (4944.9813 without restraints) Performing minimization step: 2494. Total energy = 4944.3712 kcal/mol (4943.1323 without restraints) Performing minimization step: 2495. Total energy = 4942.5235 kcal/mol (4941.2852 without restraints) Performing minimization step: 2496. Total energy = 4940.6778 kcal/mol (4939.4399 without restraints) Performing minimization step: 2497. Total energy = 4938.8338 kcal/mol (4937.5963 without restraints) Performing minimization step: 2498. Total energy = 4936.9915 kcal/mol (4935.7545 without restraints) Performing minimization step: 2499. Total energy = 4935.1509 kcal/mol (4933.9144 without restraints) Performing minimization step: 2500. Total energy = 4933.3122 kcal/mol (4932.0762 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 4931.4752 kcal/mol (4930.2397 without restraints) Performing minimization step: 2502. Total energy = 4929.6400 kcal/mol (4928.4049 without restraints) Performing minimization step: 2503. Total energy = 4927.8066 kcal/mol (4926.5720 without restraints) Performing minimization step: 2504. Total energy = 4925.9749 kcal/mol (4924.7407 without restraints) Performing minimization step: 2505. Total energy = 4924.1450 kcal/mol (4922.9113 without restraints) Performing minimization step: 2506. Total energy = 4922.3169 kcal/mol (4921.0836 without restraints) Performing minimization step: 2507. Total energy = 4920.4904 kcal/mol (4919.2576 without restraints) Performing minimization step: 2508. Total energy = 4918.6658 kcal/mol (4917.4335 without restraints) Performing minimization step: 2509. Total energy = 4916.8429 kcal/mol (4915.6112 without restraints) Performing minimization step: 2510. Total energy = 4915.0219 kcal/mol (4913.7905 without restraints) Performing minimization step: 2511. Total energy = 4913.2027 kcal/mol (4911.9718 without restraints) Performing minimization step: 2512. Total energy = 4911.3851 kcal/mol (4910.1547 without restraints) Performing minimization step: 2513. Total energy = 4909.5692 kcal/mol (4908.3392 without restraints) Performing minimization step: 2514. Total energy = 4907.7550 kcal/mol (4906.5255 without restraints) Performing minimization step: 2515. Total energy = 4905.9426 kcal/mol (4904.7135 without restraints) Performing minimization step: 2516. Total energy = 4904.1317 kcal/mol (4902.9031 without restraints) Performing minimization step: 2517. Total energy = 4902.3230 kcal/mol (4901.0949 without restraints) Performing minimization step: 2518. Total energy = 4900.5158 kcal/mol (4899.2881 without restraints) Performing minimization step: 2519. Total energy = 4898.7103 kcal/mol (4897.4831 without restraints) Performing minimization step: 2520. Total energy = 4896.9065 kcal/mol (4895.6798 without restraints) Performing minimization step: 2521. Total energy = 4895.1045 kcal/mol (4893.8782 without restraints) Performing minimization step: 2522. Total energy = 4893.3042 kcal/mol (4892.0784 without restraints) Performing minimization step: 2523. Total energy = 4891.5056 kcal/mol (4890.2803 without restraints) Performing minimization step: 2524. Total energy = 4889.7088 kcal/mol (4888.4839 without restraints) Performing minimization step: 2525. Total energy = 4887.9137 kcal/mol (4886.6893 without restraints) Performing minimization step: 2526. Total energy = 4886.1203 kcal/mol (4884.8964 without restraints) Performing minimization step: 2527. Total energy = 4884.3288 kcal/mol (4883.1054 without restraints) Performing minimization step: 2528. Total energy = 4882.5390 kcal/mol (4881.3160 without restraints) Performing minimization step: 2529. Total energy = 4880.7509 kcal/mol (4879.5284 without restraints) Performing minimization step: 2530. Total energy = 4878.9643 kcal/mol (4877.7423 without restraints) Performing minimization step: 2531. Total energy = 4877.1795 kcal/mol (4875.9578 without restraints) Performing minimization step: 2532. Total energy = 4875.3962 kcal/mol (4874.1751 without restraints) Performing minimization step: 2533. Total energy = 4873.6147 kcal/mol (4872.3941 without restraints) Performing minimization step: 2534. Total energy = 4871.8351 kcal/mol (4870.6150 without restraints) Performing minimization step: 2535. Total energy = 4870.0571 kcal/mol (4868.8374 without restraints) Performing minimization step: 2536. Total energy = 4868.2807 kcal/mol (4867.0615 without restraints) Performing minimization step: 2537. Total energy = 4866.5060 kcal/mol (4865.2872 without restraints) Performing minimization step: 2538. Total energy = 4864.7332 kcal/mol (4863.5149 without restraints) Performing minimization step: 2539. Total energy = 4862.9619 kcal/mol (4861.7441 without restraints) Performing minimization step: 2540. Total energy = 4861.1923 kcal/mol (4859.9749 without restraints) Performing minimization step: 2541. Total energy = 4859.4244 kcal/mol (4858.2075 without restraints) Performing minimization step: 2542. Total energy = 4857.6582 kcal/mol (4856.4418 without restraints) Performing minimization step: 2543. Total energy = 4855.8937 kcal/mol (4854.6777 without restraints) Performing minimization step: 2544. Total energy = 4854.1309 kcal/mol (4852.9153 without restraints) Performing minimization step: 2545. Total energy = 4852.3697 kcal/mol (4851.1546 without restraints) Performing minimization step: 2546. Total energy = 4850.6101 kcal/mol (4849.3955 without restraints) Performing minimization step: 2547. Total energy = 4848.8523 kcal/mol (4847.6382 without restraints) Performing minimization step: 2548. Total energy = 4847.0967 kcal/mol (4845.8831 without restraints) Performing minimization step: 2549. Total energy = 4845.3425 kcal/mol (4844.1293 without restraints) Performing minimization step: 2550. Total energy = 4843.5895 kcal/mol (4842.3768 without restraints) Performing minimization step: 2551. Total energy = 4841.8383 kcal/mol (4840.6261 without restraints) Performing minimization step: 2552. Total energy = 4840.0889 kcal/mol (4838.8771 without restraints) Performing minimization step: 2553. Total energy = 4838.3410 kcal/mol (4837.1295 without restraints) Performing minimization step: 2554. Total energy = 4836.5947 kcal/mol (4835.3838 without restraints) Performing minimization step: 2555. Total energy = 4834.8505 kcal/mol (4833.6401 without restraints) Performing minimization step: 2556. Total energy = 4833.1076 kcal/mol (4831.8977 without restraints) Performing minimization step: 2557. Total energy = 4831.3665 kcal/mol (4830.1570 without restraints) Performing minimization step: 2558. Total energy = 4829.6270 kcal/mol (4828.4179 without restraints) Performing minimization step: 2559. Total energy = 4827.8889 kcal/mol (4826.6803 without restraints) Performing minimization step: 2560. Total energy = 4826.1527 kcal/mol (4824.9447 without restraints) Performing minimization step: 2561. Total energy = 4824.4182 kcal/mol (4823.2106 without restraints) Performing minimization step: 2562. Total energy = 4822.6852 kcal/mol (4821.4781 without restraints) Performing minimization step: 2563. Total energy = 4820.9539 kcal/mol (4819.7472 without restraints) Performing minimization step: 2564. Total energy = 4819.2243 kcal/mol (4818.0181 without restraints) Performing minimization step: 2565. Total energy = 4817.4964 kcal/mol (4816.2907 without restraints) Performing minimization step: 2566. Total energy = 4815.7701 kcal/mol (4814.5648 without restraints) Performing minimization step: 2567. Total energy = 4814.0454 kcal/mol (4812.8406 without restraints) Performing minimization step: 2568. Total energy = 4812.3222 kcal/mol (4811.1177 without restraints) Performing minimization step: 2569. Total energy = 4810.6006 kcal/mol (4809.3967 without restraints) Performing minimization step: 2570. Total energy = 4808.8808 kcal/mol (4807.6773 without restraints) Performing minimization step: 2571. Total energy = 4807.1626 kcal/mol (4805.9596 without restraints) Performing minimization step: 2572. Total energy = 4805.4458 kcal/mol (4804.2433 without restraints) Performing minimization step: 2573. Total energy = 4803.7309 kcal/mol (4802.5289 without restraints) Performing minimization step: 2574. Total energy = 4802.0175 kcal/mol (4800.8160 without restraints) Performing minimization step: 2575. Total energy = 4800.3058 kcal/mol (4799.1047 without restraints) Performing minimization step: 2576. Total energy = 4798.5957 kcal/mol (4797.3951 without restraints) Performing minimization step: 2577. Total energy = 4796.8873 kcal/mol (4795.6871 without restraints) Performing minimization step: 2578. Total energy = 4795.1804 kcal/mol (4793.9807 without restraints) Performing minimization step: 2579. Total energy = 4793.4752 kcal/mol (4792.2761 without restraints) Performing minimization step: 2580. Total energy = 4791.7717 kcal/mol (4790.5730 without restraints) Performing minimization step: 2581. Total energy = 4790.0697 kcal/mol (4788.8714 without restraints) Performing minimization step: 2582. Total energy = 4788.3694 kcal/mol (4787.1714 without restraints) Performing minimization step: 2583. Total energy = 4786.6704 kcal/mol (4785.4731 without restraints) Performing minimization step: 2584. Total energy = 4784.9733 kcal/mol (4783.7764 without restraints) Performing minimization step: 2585. Total energy = 4783.2777 kcal/mol (4782.0812 without restraints) Performing minimization step: 2586. Total energy = 4781.5836 kcal/mol (4780.3877 without restraints) Performing minimization step: 2587. Total energy = 4779.8912 kcal/mol (4778.6957 without restraints) Performing minimization step: 2588. Total energy = 4778.2004 kcal/mol (4777.0054 without restraints) Performing minimization step: 2589. Total energy = 4776.5114 kcal/mol (4775.3168 without restraints) Performing minimization step: 2590. Total energy = 4774.8240 kcal/mol (4773.6299 without restraints) Performing minimization step: 2591. Total energy = 4773.1381 kcal/mol (4771.9444 without restraints) Performing minimization step: 2592. Total energy = 4771.4536 kcal/mol (4770.2605 without restraints) Performing minimization step: 2593. Total energy = 4769.7710 kcal/mol (4768.5782 without restraints) Performing minimization step: 2594. Total energy = 4768.0897 kcal/mol (4766.8974 without restraints) Performing minimization step: 2595. Total energy = 4766.4100 kcal/mol (4765.2182 without restraints) Performing minimization step: 2596. Total energy = 4764.7319 kcal/mol (4763.5406 without restraints) Performing minimization step: 2597. Total energy = 4763.0553 kcal/mol (4761.8645 without restraints) Performing minimization step: 2598. Total energy = 4761.3802 kcal/mol (4760.1898 without restraints) Performing minimization step: 2599. Total energy = 4759.7068 kcal/mol (4758.5169 without restraints) Performing minimization step: 2600. Total energy = 4758.0350 kcal/mol (4756.8456 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 4756.3648 kcal/mol (4755.1758 without restraints) Performing minimization step: 2602. Total energy = 4754.6959 kcal/mol (4753.5074 without restraints) Performing minimization step: 2603. Total energy = 4753.0288 kcal/mol (4751.8408 without restraints) Performing minimization step: 2604. Total energy = 4751.3631 kcal/mol (4750.1755 without restraints) Performing minimization step: 2605. Total energy = 4749.6991 kcal/mol (4748.5120 without restraints) Performing minimization step: 2606. Total energy = 4748.0368 kcal/mol (4746.8501 without restraints) Performing minimization step: 2607. Total energy = 4746.3759 kcal/mol (4745.1898 without restraints) Performing minimization step: 2608. Total energy = 4744.7167 kcal/mol (4743.5310 without restraints) Performing minimization step: 2609. Total energy = 4743.0590 kcal/mol (4741.8738 without restraints) Performing minimization step: 2610. Total energy = 4741.4028 kcal/mol (4740.2181 without restraints) Performing minimization step: 2611. Total energy = 4739.7482 kcal/mol (4738.5639 without restraints) Performing minimization step: 2612. Total energy = 4738.0952 kcal/mol (4736.9113 without restraints) Performing minimization step: 2613. Total energy = 4736.4436 kcal/mol (4735.2603 without restraints) Performing minimization step: 2614. Total energy = 4734.7937 kcal/mol (4733.6108 without restraints) Performing minimization step: 2615. Total energy = 4733.1453 kcal/mol (4731.9628 without restraints) Performing minimization step: 2616. Total energy = 4731.4984 kcal/mol (4730.3164 without restraints) Performing minimization step: 2617. Total energy = 4729.8530 kcal/mol (4728.6715 without restraints) Performing minimization step: 2618. Total energy = 4728.2092 kcal/mol (4727.0282 without restraints) Performing minimization step: 2619. Total energy = 4726.5670 kcal/mol (4725.3864 without restraints) Performing minimization step: 2620. Total energy = 4724.9263 kcal/mol (4723.7462 without restraints) Performing minimization step: 2621. Total energy = 4723.2870 kcal/mol (4722.1073 without restraints) Performing minimization step: 2622. Total energy = 4721.6494 kcal/mol (4720.4703 without restraints) Performing minimization step: 2623. Total energy = 4720.0134 kcal/mol (4718.8347 without restraints) Performing minimization step: 2624. Total energy = 4718.3788 kcal/mol (4717.2006 without restraints) Performing minimization step: 2625. Total energy = 4716.7458 kcal/mol (4715.5680 without restraints) Performing minimization step: 2626. Total energy = 4715.1147 kcal/mol (4713.9373 without restraints) Performing minimization step: 2627. Total energy = 4713.4846 kcal/mol (4712.3078 without restraints) Performing minimization step: 2628. Total energy = 4711.8562 kcal/mol (4710.6798 without restraints) Performing minimization step: 2629. Total energy = 4710.2292 kcal/mol (4709.0533 without restraints) Performing minimization step: 2630. Total energy = 4708.6037 kcal/mol (4707.4283 without restraints) Performing minimization step: 2631. Total energy = 4706.9800 kcal/mol (4705.8050 without restraints) Performing minimization step: 2632. Total energy = 4705.3576 kcal/mol (4704.1831 without restraints) Performing minimization step: 2633. Total energy = 4703.7368 kcal/mol (4702.5629 without restraints) Performing minimization step: 2634. Total energy = 4702.1176 kcal/mol (4700.9440 without restraints) Performing minimization step: 2635. Total energy = 4700.4995 kcal/mol (4699.3264 without restraints) Performing minimization step: 2636. Total energy = 4698.8830 kcal/mol (4697.7104 without restraints) Performing minimization step: 2637. Total energy = 4697.2682 kcal/mol (4696.0960 without restraints) Performing minimization step: 2638. Total energy = 4695.6548 kcal/mol (4694.4831 without restraints) Performing minimization step: 2639. Total energy = 4694.0431 kcal/mol (4692.8719 without restraints) Performing minimization step: 2640. Total energy = 4692.4328 kcal/mol (4691.2621 without restraints) Performing minimization step: 2641. Total energy = 4690.8240 kcal/mol (4689.6537 without restraints) Performing minimization step: 2642. Total energy = 4689.2166 kcal/mol (4688.0468 without restraints) Performing minimization step: 2643. Total energy = 4687.6108 kcal/mol (4686.4414 without restraints) Performing minimization step: 2644. Total energy = 4686.0064 kcal/mol (4684.8375 without restraints) Performing minimization step: 2645. Total energy = 4684.4035 kcal/mol (4683.2351 without restraints) Performing minimization step: 2646. Total energy = 4682.8021 kcal/mol (4681.6341 without restraints) Performing minimization step: 2647. Total energy = 4681.2024 kcal/mol (4680.0349 without restraints) Performing minimization step: 2648. Total energy = 4679.6043 kcal/mol (4678.4372 without restraints) Performing minimization step: 2649. Total energy = 4678.0073 kcal/mol (4676.8408 without restraints) Performing minimization step: 2650. Total energy = 4676.4119 kcal/mol (4675.2458 without restraints) Performing minimization step: 2651. Total energy = 4674.8180 kcal/mol (4673.6523 without restraints) Performing minimization step: 2652. Total energy = 4673.2255 kcal/mol (4672.0603 without restraints) Performing minimization step: 2653. Total energy = 4671.6345 kcal/mol (4670.4698 without restraints) Performing minimization step: 2654. Total energy = 4670.0450 kcal/mol (4668.8807 without restraints) Performing minimization step: 2655. Total energy = 4668.4569 kcal/mol (4667.2931 without restraints) Performing minimization step: 2656. Total energy = 4666.8701 kcal/mol (4665.7068 without restraints) Performing minimization step: 2657. Total energy = 4665.2850 kcal/mol (4664.1221 without restraints) Performing minimization step: 2658. Total energy = 4663.7012 kcal/mol (4662.5388 without restraints) Performing minimization step: 2659. Total energy = 4662.1188 kcal/mol (4660.9569 without restraints) Performing minimization step: 2660. Total energy = 4660.5381 kcal/mol (4659.3767 without restraints) Performing minimization step: 2661. Total energy = 4658.9589 kcal/mol (4657.7979 without restraints) Performing minimization step: 2662. Total energy = 4657.3814 kcal/mol (4656.2208 without restraints) Performing minimization step: 2663. Total energy = 4655.8050 kcal/mol (4654.6450 without restraints) Performing minimization step: 2664. Total energy = 4654.2302 kcal/mol (4653.0706 without restraints) Performing minimization step: 2665. Total energy = 4652.6570 kcal/mol (4651.4980 without restraints) Performing minimization step: 2666. Total energy = 4651.0853 kcal/mol (4649.9267 without restraints) Performing minimization step: 2667. Total energy = 4649.5149 kcal/mol (4648.3567 without restraints) Performing minimization step: 2668. Total energy = 4647.9453 kcal/mol (4646.7876 without restraints) Performing minimization step: 2669. Total energy = 4646.3778 kcal/mol (4645.2205 without restraints) Performing minimization step: 2670. Total energy = 4644.8116 kcal/mol (4643.6549 without restraints) Performing minimization step: 2671. Total energy = 4643.2469 kcal/mol (4642.0906 without restraints) Performing minimization step: 2672. Total energy = 4641.6837 kcal/mol (4640.5279 without restraints) Performing minimization step: 2673. Total energy = 4640.1219 kcal/mol (4638.9666 without restraints) Performing minimization step: 2674. Total energy = 4638.5617 kcal/mol (4637.4069 without restraints) Performing minimization step: 2675. Total energy = 4637.0028 kcal/mol (4635.8484 without restraints) Performing minimization step: 2676. Total energy = 4635.4452 kcal/mol (4634.2912 without restraints) Performing minimization step: 2677. Total energy = 4633.8892 kcal/mol (4632.7357 without restraints) Performing minimization step: 2678. Total energy = 4632.3346 kcal/mol (4631.1816 without restraints) Performing minimization step: 2679. Total energy = 4630.7815 kcal/mol (4629.6289 without restraints) Performing minimization step: 2680. Total energy = 4629.2297 kcal/mol (4628.0776 without restraints) Performing minimization step: 2681. Total energy = 4627.6794 kcal/mol (4626.5278 without restraints) Performing minimization step: 2682. Total energy = 4626.1306 kcal/mol (4624.9795 without restraints) Performing minimization step: 2683. Total energy = 4624.5832 kcal/mol (4623.4325 without restraints) Performing minimization step: 2684. Total energy = 4623.0372 kcal/mol (4621.8869 without restraints) Performing minimization step: 2685. Total energy = 4621.4926 kcal/mol (4620.3429 without restraints) Performing minimization step: 2686. Total energy = 4619.9494 kcal/mol (4618.8002 without restraints) Performing minimization step: 2687. Total energy = 4618.4077 kcal/mol (4617.2589 without restraints) Performing minimization step: 2688. Total energy = 4616.8673 kcal/mol (4615.7190 without restraints) Performing minimization step: 2689. Total energy = 4615.3282 kcal/mol (4614.1804 without restraints) Performing minimization step: 2690. Total energy = 4613.7908 kcal/mol (4612.6433 without restraints) Performing minimization step: 2691. Total energy = 4612.2551 kcal/mol (4611.1083 without restraints) Performing minimization step: 2692. Total energy = 4610.7206 kcal/mol (4609.5741 without restraints) Performing minimization step: 2693. Total energy = 4609.1873 kcal/mol (4608.0413 without restraints) Performing minimization step: 2694. Total energy = 4607.6557 kcal/mol (4606.5102 without restraints) Performing minimization step: 2695. Total energy = 4606.1253 kcal/mol (4604.9802 without restraints) Performing minimization step: 2696. Total energy = 4604.5962 kcal/mol (4603.4516 without restraints) Performing minimization step: 2697. Total energy = 4603.0686 kcal/mol (4601.9245 without restraints) Performing minimization step: 2698. Total energy = 4601.5421 kcal/mol (4600.3985 without restraints) Performing minimization step: 2699. Total energy = 4600.0173 kcal/mol (4598.8741 without restraints) Performing minimization step: 2700. Total energy = 4598.4937 kcal/mol (4597.3510 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 4596.9717 kcal/mol (4595.8295 without restraints) Performing minimization step: 2702. Total energy = 4595.4511 kcal/mol (4594.3093 without restraints) Performing minimization step: 2703. Total energy = 4593.9318 kcal/mol (4592.7905 without restraints) Performing minimization step: 2704. Total energy = 4592.4140 kcal/mol (4591.2731 without restraints) Performing minimization step: 2705. Total energy = 4590.8976 kcal/mol (4589.7572 without restraints) Performing minimization step: 2706. Total energy = 4589.3825 kcal/mol (4588.2426 without restraints) Performing minimization step: 2707. Total energy = 4587.8690 kcal/mol (4586.7296 without restraints) Performing minimization step: 2708. Total energy = 4586.3566 kcal/mol (4585.2176 without restraints) Performing minimization step: 2709. Total energy = 4584.8457 kcal/mol (4583.7072 without restraints) Performing minimization step: 2710. Total energy = 4583.3362 kcal/mol (4582.1981 without restraints) Performing minimization step: 2711. Total energy = 4581.8281 kcal/mol (4580.6905 without restraints) Performing minimization step: 2712. Total energy = 4580.3213 kcal/mol (4579.1842 without restraints) Performing minimization step: 2713. Total energy = 4578.8160 kcal/mol (4577.6793 without restraints) Performing minimization step: 2714. Total energy = 4577.3122 kcal/mol (4576.1760 without restraints) Performing minimization step: 2715. Total energy = 4575.8095 kcal/mol (4574.6738 without restraints) Performing minimization step: 2716. Total energy = 4574.3083 kcal/mol (4573.1731 without restraints) Performing minimization step: 2717. Total energy = 4572.8086 kcal/mol (4571.6739 without restraints) Performing minimization step: 2718. Total energy = 4571.3105 kcal/mol (4570.1762 without restraints) Performing minimization step: 2719. Total energy = 4569.8133 kcal/mol (4568.6795 without restraints) Performing minimization step: 2720. Total energy = 4568.3175 kcal/mol (4567.1842 without restraints) Performing minimization step: 2721. Total energy = 4566.8231 kcal/mol (4565.6902 without restraints) Performing minimization step: 2722. Total energy = 4565.3301 kcal/mol (4564.1977 without restraints) Performing minimization step: 2723. Total energy = 4563.8384 kcal/mol (4562.7064 without restraints) Performing minimization step: 2724. Total energy = 4562.3481 kcal/mol (4561.2166 without restraints) Performing minimization step: 2725. Total energy = 4560.8591 kcal/mol (4559.7281 without restraints) Performing minimization step: 2726. Total energy = 4559.3715 kcal/mol (4558.2410 without restraints) Performing minimization step: 2727. Total energy = 4557.8853 kcal/mol (4556.7552 without restraints) Performing minimization step: 2728. Total energy = 4556.4004 kcal/mol (4555.2708 without restraints) Performing minimization step: 2729. Total energy = 4554.9169 kcal/mol (4553.7877 without restraints) Performing minimization step: 2730. Total energy = 4553.4347 kcal/mol (4552.3060 without restraints) Performing minimization step: 2731. Total energy = 4551.9538 kcal/mol (4550.8256 without restraints) Performing minimization step: 2732. Total energy = 4550.4743 kcal/mol (4549.3466 without restraints) Performing minimization step: 2733. Total energy = 4548.9964 kcal/mol (4547.8692 without restraints) Performing minimization step: 2734. Total energy = 4547.5196 kcal/mol (4546.3928 without restraints) Performing minimization step: 2735. Total energy = 4546.0444 kcal/mol (4544.9181 without restraints) Performing minimization step: 2736. Total energy = 4544.5704 kcal/mol (4543.4446 without restraints) Performing minimization step: 2737. Total energy = 4543.0977 kcal/mol (4541.9723 without restraints) Performing minimization step: 2738. Total energy = 4541.6264 kcal/mol (4540.5015 without restraints) Performing minimization step: 2739. Total energy = 4540.1564 kcal/mol (4539.0319 without restraints) Performing minimization step: 2740. Total energy = 4538.6876 kcal/mol (4537.5636 without restraints) Performing minimization step: 2741. Total energy = 4537.2202 kcal/mol (4536.0967 without restraints) Performing minimization step: 2742. Total energy = 4535.7541 kcal/mol (4534.6311 without restraints) Performing minimization step: 2743. Total energy = 4534.2894 kcal/mol (4533.1668 without restraints) Performing minimization step: 2744. Total energy = 4532.8262 kcal/mol (4531.7041 without restraints) Performing minimization step: 2745. Total energy = 4531.3641 kcal/mol (4530.2425 without restraints) Performing minimization step: 2746. Total energy = 4529.9034 kcal/mol (4528.7822 without restraints) Performing minimization step: 2747. Total energy = 4528.4441 kcal/mol (4527.3234 without restraints) Performing minimization step: 2748. Total energy = 4526.9859 kcal/mol (4525.8655 without restraints) Performing minimization step: 2749. Total energy = 4525.5288 kcal/mol (4524.4090 without restraints) Performing minimization step: 2750. Total energy = 4524.0732 kcal/mol (4522.9540 without restraints) Performing minimization step: 2751. Total energy = 4522.6191 kcal/mol (4521.5003 without restraints) Performing minimization step: 2752. Total energy = 4521.1662 kcal/mol (4520.0479 without restraints) Performing minimization step: 2753. Total energy = 4519.7147 kcal/mol (4518.5968 without restraints) Performing minimization step: 2754. Total energy = 4518.2645 kcal/mol (4517.1470 without restraints) Performing minimization step: 2755. Total energy = 4516.8158 kcal/mol (4515.6989 without restraints) Performing minimization step: 2756. Total energy = 4515.3682 kcal/mol (4514.2517 without restraints) Performing minimization step: 2757. Total energy = 4513.9219 kcal/mol (4512.8059 without restraints) Performing minimization step: 2758. Total energy = 4512.4769 kcal/mol (4511.3614 without restraints) Performing minimization step: 2759. Total energy = 4511.0333 kcal/mol (4509.9182 without restraints) Performing minimization step: 2760. Total energy = 4509.5911 kcal/mol (4508.4765 without restraints) Performing minimization step: 2761. Total energy = 4508.1500 kcal/mol (4507.0359 without restraints) Performing minimization step: 2762. Total energy = 4506.7102 kcal/mol (4505.5966 without restraints) Performing minimization step: 2763. Total energy = 4505.2718 kcal/mol (4504.1586 without restraints) Performing minimization step: 2764. Total energy = 4503.8346 kcal/mol (4502.7218 without restraints) Performing minimization step: 2765. Total energy = 4502.3987 kcal/mol (4501.2864 without restraints) Performing minimization step: 2766. Total energy = 4500.9643 kcal/mol (4499.8525 without restraints) Performing minimization step: 2767. Total energy = 4499.5308 kcal/mol (4498.4195 without restraints) Performing minimization step: 2768. Total energy = 4498.0988 kcal/mol (4496.9880 without restraints) Performing minimization step: 2769. Total energy = 4496.6681 kcal/mol (4495.5577 without restraints) Performing minimization step: 2770. Total energy = 4495.2388 kcal/mol (4494.1289 without restraints) Performing minimization step: 2771. Total energy = 4493.8107 kcal/mol (4492.7012 without restraints) Performing minimization step: 2772. Total energy = 4492.3838 kcal/mol (4491.2749 without restraints) Performing minimization step: 2773. Total energy = 4490.9583 kcal/mol (4489.8498 without restraints) Performing minimization step: 2774. Total energy = 4489.5340 kcal/mol (4488.4260 without restraints) Performing minimization step: 2775. Total energy = 4488.1111 kcal/mol (4487.0037 without restraints) Performing minimization step: 2776. Total energy = 4486.6899 kcal/mol (4485.5829 without restraints) Performing minimization step: 2777. Total energy = 4485.2697 kcal/mol (4484.1631 without restraints) Performing minimization step: 2778. Total energy = 4483.8506 kcal/mol (4482.7445 without restraints) Performing minimization step: 2779. Total energy = 4482.4327 kcal/mol (4481.3271 without restraints) Performing minimization step: 2780. Total energy = 4481.0163 kcal/mol (4479.9111 without restraints) Performing minimization step: 2781. Total energy = 4479.6010 kcal/mol (4478.4963 without restraints) Performing minimization step: 2782. Total energy = 4478.1870 kcal/mol (4477.0828 without restraints) Performing minimization step: 2783. Total energy = 4476.7743 kcal/mol (4475.6705 without restraints) Performing minimization step: 2784. Total energy = 4475.3628 kcal/mol (4474.2595 without restraints) Performing minimization step: 2785. Total energy = 4473.9527 kcal/mol (4472.8499 without restraints) Performing minimization step: 2786. Total energy = 4472.5438 kcal/mol (4471.4414 without restraints) Performing minimization step: 2787. Total energy = 4471.1361 kcal/mol (4470.0342 without restraints) Performing minimization step: 2788. Total energy = 4469.7299 kcal/mol (4468.6284 without restraints) Performing minimization step: 2789. Total energy = 4468.3247 kcal/mol (4467.2237 without restraints) Performing minimization step: 2790. Total energy = 4466.9207 kcal/mol (4465.8202 without restraints) Performing minimization step: 2791. Total energy = 4465.5181 kcal/mol (4464.4181 without restraints) Performing minimization step: 2792. Total energy = 4464.1167 kcal/mol (4463.0171 without restraints) Performing minimization step: 2793. Total energy = 4462.7165 kcal/mol (4461.6174 without restraints) Performing minimization step: 2794. Total energy = 4461.3177 kcal/mol (4460.2191 without restraints) Performing minimization step: 2795. Total energy = 4459.9202 kcal/mol (4458.8221 without restraints) Performing minimization step: 2796. Total energy = 4458.5238 kcal/mol (4457.4261 without restraints) Performing minimization step: 2797. Total energy = 4457.1286 kcal/mol (4456.0314 without restraints) Performing minimization step: 2798. Total energy = 4455.7347 kcal/mol (4454.6380 without restraints) Performing minimization step: 2799. Total energy = 4454.3420 kcal/mol (4453.2457 without restraints) Performing minimization step: 2800. Total energy = 4452.9506 kcal/mol (4451.8548 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 4451.5604 kcal/mol (4450.4651 without restraints) Performing minimization step: 2802. Total energy = 4450.1715 kcal/mol (4449.0766 without restraints) Performing minimization step: 2803. Total energy = 4448.7836 kcal/mol (4447.6892 without restraints) Performing minimization step: 2804. Total energy = 4447.3971 kcal/mol (4446.3032 without restraints) Performing minimization step: 2805. Total energy = 4446.0119 kcal/mol (4444.9185 without restraints) Performing minimization step: 2806. Total energy = 4444.6279 kcal/mol (4443.5350 without restraints) Performing minimization step: 2807. Total energy = 4443.2452 kcal/mol (4442.1527 without restraints) Performing minimization step: 2808. Total energy = 4441.8636 kcal/mol (4440.7716 without restraints) Performing minimization step: 2809. Total energy = 4440.4834 kcal/mol (4439.3918 without restraints) Performing minimization step: 2810. Total energy = 4439.1043 kcal/mol (4438.0133 without restraints) Performing minimization step: 2811. Total energy = 4437.7267 kcal/mol (4436.6361 without restraints) Performing minimization step: 2812. Total energy = 4436.3501 kcal/mol (4435.2600 without restraints) Performing minimization step: 2813. Total energy = 4434.9748 kcal/mol (4433.8851 without restraints) Performing minimization step: 2814. Total energy = 4433.6006 kcal/mol (4432.5114 without restraints) Performing minimization step: 2815. Total energy = 4432.2277 kcal/mol (4431.1390 without restraints) Performing minimization step: 2816. Total energy = 4430.8560 kcal/mol (4429.7677 without restraints) Performing minimization step: 2817. Total energy = 4429.4855 kcal/mol (4428.3977 without restraints) Performing minimization step: 2818. Total energy = 4428.1162 kcal/mol (4427.0289 without restraints) Performing minimization step: 2819. Total energy = 4426.7482 kcal/mol (4425.6613 without restraints) Performing minimization step: 2820. Total energy = 4425.3813 kcal/mol (4424.2950 without restraints) Performing minimization step: 2821. Total energy = 4424.0157 kcal/mol (4422.9298 without restraints) Performing minimization step: 2822. Total energy = 4422.6513 kcal/mol (4421.5658 without restraints) Performing minimization step: 2823. Total energy = 4421.2881 kcal/mol (4420.2031 without restraints) Performing minimization step: 2824. Total energy = 4419.9261 kcal/mol (4418.8416 without restraints) Performing minimization step: 2825. Total energy = 4418.5653 kcal/mol (4417.4813 without restraints) Performing minimization step: 2826. Total energy = 4417.2058 kcal/mol (4416.1222 without restraints) Performing minimization step: 2827. Total energy = 4415.8474 kcal/mol (4414.7642 without restraints) Performing minimization step: 2828. Total energy = 4414.4900 kcal/mol (4413.4074 without restraints) Performing minimization step: 2829. Total energy = 4413.1340 kcal/mol (4412.0519 without restraints) Performing minimization step: 2830. Total energy = 4411.7793 kcal/mol (4410.6976 without restraints) Performing minimization step: 2831. Total energy = 4410.4257 kcal/mol (4409.3445 without restraints) Performing minimization step: 2832. Total energy = 4409.0733 kcal/mol (4407.9926 without restraints) Performing minimization step: 2833. Total energy = 4407.7222 kcal/mol (4406.6420 without restraints) Performing minimization step: 2834. Total energy = 4406.3723 kcal/mol (4405.2925 without restraints) Performing minimization step: 2835. Total energy = 4405.0235 kcal/mol (4403.9442 without restraints) Performing minimization step: 2836. Total energy = 4403.6759 kcal/mol (4402.5971 without restraints) Performing minimization step: 2837. Total energy = 4402.3295 kcal/mol (4401.2511 without restraints) Performing minimization step: 2838. Total energy = 4400.9843 kcal/mol (4399.9064 without restraints) Performing minimization step: 2839. Total energy = 4399.6403 kcal/mol (4398.5628 without restraints) Performing minimization step: 2840. Total energy = 4398.2974 kcal/mol (4397.2205 without restraints) Performing minimization step: 2841. Total energy = 4396.9556 kcal/mol (4395.8792 without restraints) Performing minimization step: 2842. Total energy = 4395.6154 kcal/mol (4394.5395 without restraints) Performing minimization step: 2843. Total energy = 4394.2762 kcal/mol (4393.2007 without restraints) Performing minimization step: 2844. Total energy = 4392.9380 kcal/mol (4391.8628 without restraints) Performing minimization step: 2845. Total energy = 4391.6009 kcal/mol (4390.5264 without restraints) Performing minimization step: 2846. Total energy = 4390.2652 kcal/mol (4389.1911 without restraints) Performing minimization step: 2847. Total energy = 4388.9306 kcal/mol (4387.8570 without restraints) Performing minimization step: 2848. Total energy = 4387.5972 kcal/mol (4386.5240 without restraints) Performing minimization step: 2849. Total energy = 4386.2649 kcal/mol (4385.1922 without restraints) Performing minimization step: 2850. Total energy = 4384.9339 kcal/mol (4383.8616 without restraints) Performing minimization step: 2851. Total energy = 4383.6040 kcal/mol (4382.5322 without restraints) Performing minimization step: 2852. Total energy = 4382.2755 kcal/mol (4381.2042 without restraints) Performing minimization step: 2853. Total energy = 4380.9481 kcal/mol (4379.8773 without restraints) Performing minimization step: 2854. Total energy = 4379.6217 kcal/mol (4378.5514 without restraints) Performing minimization step: 2855. Total energy = 4378.2965 kcal/mol (4377.2266 without restraints) Performing minimization step: 2856. Total energy = 4376.9724 kcal/mol (4375.9030 without restraints) Performing minimization step: 2857. Total energy = 4375.6495 kcal/mol (4374.5806 without restraints) Performing minimization step: 2858. Total energy = 4374.3278 kcal/mol (4373.2595 without restraints) Performing minimization step: 2859. Total energy = 4373.0073 kcal/mol (4371.9393 without restraints) Performing minimization step: 2860. Total energy = 4371.6879 kcal/mol (4370.6204 without restraints) Performing minimization step: 2861. Total energy = 4370.3696 kcal/mol (4369.3026 without restraints) Performing minimization step: 2862. Total energy = 4369.0525 kcal/mol (4367.9859 without restraints) Performing minimization step: 2863. Total energy = 4367.7367 kcal/mol (4366.6706 without restraints) Performing minimization step: 2864. Total energy = 4366.4219 kcal/mol (4365.3562 without restraints) Performing minimization step: 2865. Total energy = 4365.1082 kcal/mol (4364.0430 without restraints) Performing minimization step: 2866. Total energy = 4363.7957 kcal/mol (4362.7310 without restraints) Performing minimization step: 2867. Total energy = 4362.4841 kcal/mol (4361.4199 without restraints) Performing minimization step: 2868. Total energy = 4361.1744 kcal/mol (4360.1106 without restraints) Performing minimization step: 2869. Total energy = 4359.8655 kcal/mol (4358.8022 without restraints) Performing minimization step: 2870. Total energy = 4358.5575 kcal/mol (4357.4947 without restraints) Performing minimization step: 2871. Total energy = 4357.2507 kcal/mol (4356.1883 without restraints) Performing minimization step: 2872. Total energy = 4355.9450 kcal/mol (4354.8831 without restraints) Performing minimization step: 2873. Total energy = 4354.6404 kcal/mol (4353.5790 without restraints) Performing minimization step: 2874. Total energy = 4353.3372 kcal/mol (4352.2763 without restraints) Performing minimization step: 2875. Total energy = 4352.0350 kcal/mol (4350.9745 without restraints) Performing minimization step: 2876. Total energy = 4350.7338 kcal/mol (4349.6739 without restraints) Performing minimization step: 2877. Total energy = 4349.4339 kcal/mol (4348.3744 without restraints) Performing minimization step: 2878. Total energy = 4348.1350 kcal/mol (4347.0759 without restraints) Performing minimization step: 2879. Total energy = 4346.8372 kcal/mol (4345.7787 without restraints) Performing minimization step: 2880. Total energy = 4345.5406 kcal/mol (4344.4826 without restraints) Performing minimization step: 2881. Total energy = 4344.2450 kcal/mol (4343.1874 without restraints) Performing minimization step: 2882. Total energy = 4342.9508 kcal/mol (4341.8936 without restraints) Performing minimization step: 2883. Total energy = 4341.6573 kcal/mol (4340.6007 without restraints) Performing minimization step: 2884. Total energy = 4340.3654 kcal/mol (4339.3092 without restraints) Performing minimization step: 2885. Total energy = 4339.0744 kcal/mol (4338.0187 without restraints) Performing minimization step: 2886. Total energy = 4337.7845 kcal/mol (4336.7293 without restraints) Performing minimization step: 2887. Total energy = 4336.4958 kcal/mol (4335.4410 without restraints) Performing minimization step: 2888. Total energy = 4335.2081 kcal/mol (4334.1538 without restraints) Performing minimization step: 2889. Total energy = 4333.9216 kcal/mol (4332.8678 without restraints) Performing minimization step: 2890. Total energy = 4332.6362 kcal/mol (4331.5828 without restraints) Performing minimization step: 2891. Total energy = 4331.3519 kcal/mol (4330.2990 without restraints) Performing minimization step: 2892. Total energy = 4330.0687 kcal/mol (4329.0163 without restraints) Performing minimization step: 2893. Total energy = 4328.7867 kcal/mol (4327.7348 without restraints) Performing minimization step: 2894. Total energy = 4327.5056 kcal/mol (4326.4541 without restraints) Performing minimization step: 2895. Total energy = 4326.2257 kcal/mol (4325.1747 without restraints) Performing minimization step: 2896. Total energy = 4324.9472 kcal/mol (4323.8966 without restraints) Performing minimization step: 2897. Total energy = 4323.6695 kcal/mol (4322.6194 without restraints) Performing minimization step: 2898. Total energy = 4322.3929 kcal/mol (4321.3433 without restraints) Performing minimization step: 2899. Total energy = 4321.1174 kcal/mol (4320.0683 without restraints) Performing minimization step: 2900. Total energy = 4319.8433 kcal/mol (4318.7947 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 4318.5701 kcal/mol (4317.5219 without restraints) Performing minimization step: 2902. Total energy = 4317.2979 kcal/mol (4316.2501 without restraints) Performing minimization step: 2903. Total energy = 4316.0272 kcal/mol (4314.9799 without restraints) Performing minimization step: 2904. Total energy = 4314.7573 kcal/mol (4313.7106 without restraints) Performing minimization step: 2905. Total energy = 4313.4885 kcal/mol (4312.4422 without restraints) Performing minimization step: 2906. Total energy = 4312.2207 kcal/mol (4311.1749 without restraints) Performing minimization step: 2907. Total energy = 4310.9543 kcal/mol (4309.9090 without restraints) Performing minimization step: 2908. Total energy = 4309.6883 kcal/mol (4308.6434 without restraints) Performing minimization step: 2909. Total energy = 4308.4237 kcal/mol (4307.3793 without restraints) Performing minimization step: 2910. Total energy = 4307.1601 kcal/mol (4306.1161 without restraints) Performing minimization step: 2911. Total energy = 4305.8977 kcal/mol (4304.8542 without restraints) Performing minimization step: 2912. Total energy = 4304.6364 kcal/mol (4303.5934 without restraints) Performing minimization step: 2913. Total energy = 4303.3764 kcal/mol (4302.3339 without restraints) Performing minimization step: 2914. Total energy = 4302.1172 kcal/mol (4301.0750 without restraints) Performing minimization step: 2915. Total energy = 4300.8589 kcal/mol (4299.8173 without restraints) Performing minimization step: 2916. Total energy = 4299.6018 kcal/mol (4298.5608 without restraints) Performing minimization step: 2917. Total energy = 4298.3460 kcal/mol (4297.3053 without restraints) Performing minimization step: 2918. Total energy = 4297.0911 kcal/mol (4296.0509 without restraints) Performing minimization step: 2919. Total energy = 4295.8373 kcal/mol (4294.7976 without restraints) Performing minimization step: 2920. Total energy = 4294.5846 kcal/mol (4293.5454 without restraints) Performing minimization step: 2921. Total energy = 4293.3330 kcal/mol (4292.2942 without restraints) Performing minimization step: 2922. Total energy = 4292.0824 kcal/mol (4291.0441 without restraints) Performing minimization step: 2923. Total energy = 4290.8329 kcal/mol (4289.7951 without restraints) Performing minimization step: 2924. Total energy = 4289.5845 kcal/mol (4288.5471 without restraints) Performing minimization step: 2925. Total energy = 4288.3371 kcal/mol (4287.3002 without restraints) Performing minimization step: 2926. Total energy = 4287.0908 kcal/mol (4286.0544 without restraints) Performing minimization step: 2927. Total energy = 4285.8455 kcal/mol (4284.8096 without restraints) Performing minimization step: 2928. Total energy = 4284.6015 kcal/mol (4283.5660 without restraints) Performing minimization step: 2929. Total energy = 4283.3583 kcal/mol (4282.3234 without restraints) Performing minimization step: 2930. Total energy = 4282.1163 kcal/mol (4281.0818 without restraints) Performing minimization step: 2931. Total energy = 4280.8753 kcal/mol (4279.8413 without restraints) Performing minimization step: 2932. Total energy = 4279.6353 kcal/mol (4278.6017 without restraints) Performing minimization step: 2933. Total energy = 4278.3964 kcal/mol (4277.3633 without restraints) Performing minimization step: 2934. Total energy = 4277.1586 kcal/mol (4276.1261 without restraints) Performing minimization step: 2935. Total energy = 4275.9220 kcal/mol (4274.8898 without restraints) Performing minimization step: 2936. Total energy = 4274.6862 kcal/mol (4273.6545 without restraints) Performing minimization step: 2937. Total energy = 4273.4514 kcal/mol (4272.4202 without restraints) Performing minimization step: 2938. Total energy = 4272.2177 kcal/mol (4271.1870 without restraints) Performing minimization step: 2939. Total energy = 4270.9851 kcal/mol (4269.9548 without restraints) Performing minimization step: 2940. Total energy = 4269.7535 kcal/mol (4268.7237 without restraints) Performing minimization step: 2941. Total energy = 4268.5229 kcal/mol (4267.4936 without restraints) Performing minimization step: 2942. Total energy = 4267.2934 kcal/mol (4266.2647 without restraints) Performing minimization step: 2943. Total energy = 4266.0650 kcal/mol (4265.0366 without restraints) Performing minimization step: 2944. Total energy = 4264.8376 kcal/mol (4263.8097 without restraints) Performing minimization step: 2945. Total energy = 4263.6111 kcal/mol (4262.5835 without restraints) Performing minimization step: 2946. Total energy = 4262.3856 kcal/mol (4261.3586 without restraints) Performing minimization step: 2947. Total energy = 4261.1614 kcal/mol (4260.1349 without restraints) Performing minimization step: 2948. Total energy = 4259.9381 kcal/mol (4258.9120 without restraints) Performing minimization step: 2949. Total energy = 4258.7163 kcal/mol (4257.6908 without restraints) Performing minimization step: 2950. Total energy = 4257.4951 kcal/mol (4256.4700 without restraints) Performing minimization step: 2951. Total energy = 4256.2747 kcal/mol (4255.2500 without restraints) Performing minimization step: 2952. Total energy = 4255.0554 kcal/mol (4254.0313 without restraints) Performing minimization step: 2953. Total energy = 4253.8372 kcal/mol (4252.8135 without restraints) Performing minimization step: 2954. Total energy = 4252.6200 kcal/mol (4251.5968 without restraints) Performing minimization step: 2955. Total energy = 4251.4039 kcal/mol (4250.3811 without restraints) Performing minimization step: 2956. Total energy = 4250.1887 kcal/mol (4249.1664 without restraints) Performing minimization step: 2957. Total energy = 4248.9748 kcal/mol (4247.9530 without restraints) Performing minimization step: 2958. Total energy = 4247.7615 kcal/mol (4246.7401 without restraints) Performing minimization step: 2959. Total energy = 4246.5494 kcal/mol (4245.5285 without restraints) Performing minimization step: 2960. Total energy = 4245.3383 kcal/mol (4244.3179 without restraints) Performing minimization step: 2961. Total energy = 4244.1282 kcal/mol (4243.1083 without restraints) Performing minimization step: 2962. Total energy = 4242.9192 kcal/mol (4241.8997 without restraints) Performing minimization step: 2963. Total energy = 4241.7111 kcal/mol (4240.6921 without restraints) Performing minimization step: 2964. Total energy = 4240.5040 kcal/mol (4239.4855 without restraints) Performing minimization step: 2965. Total energy = 4239.2978 kcal/mol (4238.2798 without restraints) Performing minimization step: 2966. Total energy = 4238.0928 kcal/mol (4237.0752 without restraints) Performing minimization step: 2967. Total energy = 4236.8886 kcal/mol (4235.8715 without restraints) Performing minimization step: 2968. Total energy = 4235.6856 kcal/mol (4234.6689 without restraints) Performing minimization step: 2969. Total energy = 4234.4838 kcal/mol (4233.4676 without restraints) Performing minimization step: 2970. Total energy = 4233.2827 kcal/mol (4232.2670 without restraints) Performing minimization step: 2971. Total energy = 4232.0829 kcal/mol (4231.0676 without restraints) Performing minimization step: 2972. Total energy = 4230.8841 kcal/mol (4229.8693 without restraints) Performing minimization step: 2973. Total energy = 4229.6860 kcal/mol (4228.6717 without restraints) Performing minimization step: 2974. Total energy = 4228.4891 kcal/mol (4227.4754 without restraints) Performing minimization step: 2975. Total energy = 4227.2931 kcal/mol (4226.2798 without restraints) Performing minimization step: 2976. Total energy = 4226.0985 kcal/mol (4225.0856 without restraints) Performing minimization step: 2977. Total energy = 4224.9044 kcal/mol (4223.8920 without restraints) Performing minimization step: 2978. Total energy = 4223.7113 kcal/mol (4222.6993 without restraints) Performing minimization step: 2979. Total energy = 4222.5192 kcal/mol (4221.5077 without restraints) Performing minimization step: 2980. Total energy = 4221.3280 kcal/mol (4220.3170 without restraints) Performing minimization step: 2981. Total energy = 4220.1379 kcal/mol (4219.1274 without restraints) Performing minimization step: 2982. Total energy = 4218.9487 kcal/mol (4217.9387 without restraints) Performing minimization step: 2983. Total energy = 4217.7605 kcal/mol (4216.7509 without restraints) Performing minimization step: 2984. Total energy = 4216.5736 kcal/mol (4215.5645 without restraints) Performing minimization step: 2985. Total energy = 4215.3874 kcal/mol (4214.3787 without restraints) Performing minimization step: 2986. Total energy = 4214.2022 kcal/mol (4213.1940 without restraints) Performing minimization step: 2987. Total energy = 4213.0175 kcal/mol (4212.0097 without restraints) Performing minimization step: 2988. Total energy = 4211.8342 kcal/mol (4210.8269 without restraints) Performing minimization step: 2989. Total energy = 4210.6518 kcal/mol (4209.6451 without restraints) Performing minimization step: 2990. Total energy = 4209.4703 kcal/mol (4208.4640 without restraints) Performing minimization step: 2991. Total energy = 4208.2901 kcal/mol (4207.2843 without restraints) Performing minimization step: 2992. Total energy = 4207.1107 kcal/mol (4206.1054 without restraints) Performing minimization step: 2993. Total energy = 4205.9323 kcal/mol (4204.9274 without restraints) Performing minimization step: 2994. Total energy = 4204.7548 kcal/mol (4203.7504 without restraints) Performing minimization step: 2995. Total energy = 4203.5784 kcal/mol (4202.5745 without restraints) Performing minimization step: 2996. Total energy = 4202.4030 kcal/mol (4201.3995 without restraints) Performing minimization step: 2997. Total energy = 4201.2284 kcal/mol (4200.2254 without restraints) Performing minimization step: 2998. Total energy = 4200.0547 kcal/mol (4199.0522 without restraints) Performing minimization step: 2999. Total energy = 4198.8822 kcal/mol (4197.8801 without restraints) Performing minimization step: 3000. Total energy = 4197.7105 kcal/mol (4196.7088 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 4196.5398 kcal/mol (4195.5388 without restraints) Performing minimization step: 3002. Total energy = 4195.3701 kcal/mol (4194.3695 without restraints) Performing minimization step: 3003. Total energy = 4194.2013 kcal/mol (4193.2011 without restraints) Performing minimization step: 3004. Total energy = 4193.0334 kcal/mol (4192.0337 without restraints) Performing minimization step: 3005. Total energy = 4191.8664 kcal/mol (4190.8671 without restraints) Performing minimization step: 3006. Total energy = 4190.7004 kcal/mol (4189.7016 without restraints) Performing minimization step: 3007. Total energy = 4189.5353 kcal/mol (4188.5370 without restraints) Performing minimization step: 3008. Total energy = 4188.3716 kcal/mol (4187.3738 without restraints) Performing minimization step: 3009. Total energy = 4187.2085 kcal/mol (4186.2111 without restraints) Performing minimization step: 3010. Total energy = 4186.0465 kcal/mol (4185.0495 without restraints) Performing minimization step: 3011. Total energy = 4184.8852 kcal/mol (4183.8887 without restraints) Performing minimization step: 3012. Total energy = 4183.7249 kcal/mol (4182.7289 without restraints) Performing minimization step: 3013. Total energy = 4182.5654 kcal/mol (4181.5699 without restraints) Performing minimization step: 3014. Total energy = 4181.4070 kcal/mol (4180.4119 without restraints) Performing minimization step: 3015. Total energy = 4180.2496 kcal/mol (4179.2550 without restraints) Performing minimization step: 3016. Total energy = 4179.0930 kcal/mol (4178.0989 without restraints) Performing minimization step: 3017. Total energy = 4177.9373 kcal/mol (4176.9437 without restraints) Performing minimization step: 3018. Total energy = 4176.7826 kcal/mol (4175.7894 without restraints) Performing minimization step: 3019. Total energy = 4175.6288 kcal/mol (4174.6361 without restraints) Performing minimization step: 3020. Total energy = 4174.4759 kcal/mol (4173.4837 without restraints) Performing minimization step: 3021. Total energy = 4173.3240 kcal/mol (4172.3322 without restraints) Performing minimization step: 3022. Total energy = 4172.1729 kcal/mol (4171.1816 without restraints) Performing minimization step: 3023. Total energy = 4171.0229 kcal/mol (4170.0320 without restraints) Performing minimization step: 3024. Total energy = 4169.8739 kcal/mol (4168.8835 without restraints) Performing minimization step: 3025. Total energy = 4168.7257 kcal/mol (4167.7359 without restraints) Performing minimization step: 3026. Total energy = 4167.5785 kcal/mol (4166.5891 without restraints) Performing minimization step: 3027. Total energy = 4166.4322 kcal/mol (4165.4432 without restraints) Performing minimization step: 3028. Total energy = 4165.2867 kcal/mol (4164.2981 without restraints) Performing minimization step: 3029. Total energy = 4164.1423 kcal/mol (4163.1542 without restraints) Performing minimization step: 3030. Total energy = 4162.9986 kcal/mol (4162.0110 without restraints) Performing minimization step: 3031. Total energy = 4161.8561 kcal/mol (4160.8689 without restraints) Performing minimization step: 3032. Total energy = 4160.7145 kcal/mol (4159.7278 without restraints) Performing minimization step: 3033. Total energy = 4159.5735 kcal/mol (4158.5874 without restraints) Performing minimization step: 3034. Total energy = 4158.4334 kcal/mol (4157.4475 without restraints) Performing minimization step: 3035. Total energy = 4157.2941 kcal/mol (4156.3089 without restraints) Performing minimization step: 3036. Total energy = 4156.1561 kcal/mol (4155.1714 without restraints) Performing minimization step: 3037. Total energy = 4155.0189 kcal/mol (4154.0345 without restraints) Performing minimization step: 3038. Total energy = 4153.8825 kcal/mol (4152.8986 without restraints) Performing minimization step: 3039. Total energy = 4152.7470 kcal/mol (4151.7636 without restraints) Performing minimization step: 3040. Total energy = 4151.6124 kcal/mol (4150.6295 without restraints) Performing minimization step: 3041. Total energy = 4150.4788 kcal/mol (4149.4963 without restraints) Performing minimization step: 3042. Total energy = 4149.3459 kcal/mol (4148.3639 without restraints) Performing minimization step: 3043. Total energy = 4148.2138 kcal/mol (4147.2323 without restraints) Performing minimization step: 3044. Total energy = 4147.0828 kcal/mol (4146.1018 without restraints) Performing minimization step: 3045. Total energy = 4145.9529 kcal/mol (4144.9724 without restraints) Performing minimization step: 3046. Total energy = 4144.8240 kcal/mol (4143.8438 without restraints) Performing minimization step: 3047. Total energy = 4143.6957 kcal/mol (4142.7160 without restraints) Performing minimization step: 3048. Total energy = 4142.5682 kcal/mol (4141.5891 without restraints) Performing minimization step: 3049. Total energy = 4141.4417 kcal/mol (4140.4630 without restraints) Performing minimization step: 3050. Total energy = 4140.3162 kcal/mol (4139.3380 without restraints) Performing minimization step: 3051. Total energy = 4139.1916 kcal/mol (4138.2139 without restraints) Performing minimization step: 3052. Total energy = 4138.0679 kcal/mol (4137.0905 without restraints) Performing minimization step: 3053. Total energy = 4136.9449 kcal/mol (4135.9680 without restraints) Performing minimization step: 3054. Total energy = 4135.8229 kcal/mol (4134.8466 without restraints) Performing minimization step: 3055. Total energy = 4134.7018 kcal/mol (4133.7259 without restraints) Performing minimization step: 3056. Total energy = 4133.5814 kcal/mol (4132.6059 without restraints) Performing minimization step: 3057. Total energy = 4132.4619 kcal/mol (4131.4869 without restraints) Performing minimization step: 3058. Total energy = 4131.3434 kcal/mol (4130.3688 without restraints) Performing minimization step: 3059. Total energy = 4130.2257 kcal/mol (4129.2516 without restraints) Performing minimization step: 3060. Total energy = 4129.1088 kcal/mol (4128.1351 without restraints) Performing minimization step: 3061. Total energy = 4127.9927 kcal/mol (4127.0196 without restraints) Performing minimization step: 3062. Total energy = 4126.8772 kcal/mol (4125.9046 without restraints) Performing minimization step: 3063. Total energy = 4125.7630 kcal/mol (4124.7908 without restraints) Performing minimization step: 3064. Total energy = 4124.6496 kcal/mol (4123.6777 without restraints) Performing minimization step: 3065. Total energy = 4123.5368 kcal/mol (4122.5655 without restraints) Performing minimization step: 3066. Total energy = 4122.4253 kcal/mol (4121.4544 without restraints) Performing minimization step: 3067. Total energy = 4121.3145 kcal/mol (4120.3442 without restraints) Performing minimization step: 3068. Total energy = 4120.2049 kcal/mol (4119.2350 without restraints) Performing minimization step: 3069. Total energy = 4119.0961 kcal/mol (4118.1267 without restraints) Performing minimization step: 3070. Total energy = 4117.9879 kcal/mol (4117.0190 without restraints) Performing minimization step: 3071. Total energy = 4116.8806 kcal/mol (4115.9120 without restraints) Performing minimization step: 3072. Total energy = 4115.7741 kcal/mol (4114.8061 without restraints) Performing minimization step: 3073. Total energy = 4114.6686 kcal/mol (4113.7010 without restraints) Performing minimization step: 3074. Total energy = 4113.5639 kcal/mol (4112.5968 without restraints) Performing minimization step: 3075. Total energy = 4112.4601 kcal/mol (4111.4936 without restraints) Performing minimization step: 3076. Total energy = 4111.3571 kcal/mol (4110.3909 without restraints) Performing minimization step: 3077. Total energy = 4110.2554 kcal/mol (4109.2897 without restraints) Performing minimization step: 3078. Total energy = 4109.1541 kcal/mol (4108.1889 without restraints) Performing minimization step: 3079. Total energy = 4108.0537 kcal/mol (4107.0889 without restraints) Performing minimization step: 3080. Total energy = 4106.9548 kcal/mol (4105.9904 without restraints) Performing minimization step: 3081. Total energy = 4105.8560 kcal/mol (4104.8922 without restraints) Performing minimization step: 3082. Total energy = 4104.7581 kcal/mol (4103.7947 without restraints) Performing minimization step: 3083. Total energy = 4103.6612 kcal/mol (4102.6982 without restraints) Performing minimization step: 3084. Total energy = 4102.5650 kcal/mol (4101.6025 without restraints) Performing minimization step: 3085. Total energy = 4101.4696 kcal/mol (4100.5076 without restraints) Performing minimization step: 3086. Total energy = 4100.3751 kcal/mol (4099.4135 without restraints) Performing minimization step: 3087. Total energy = 4099.2814 kcal/mol (4098.3203 without restraints) Performing minimization step: 3088. Total energy = 4098.1885 kcal/mol (4097.2279 without restraints) Performing minimization step: 3089. Total energy = 4097.0965 kcal/mol (4096.1364 without restraints) Performing minimization step: 3090. Total energy = 4096.0051 kcal/mol (4095.0455 without restraints) Performing minimization step: 3091. Total energy = 4094.9148 kcal/mol (4093.9556 without restraints) Performing minimization step: 3092. Total energy = 4093.8255 kcal/mol (4092.8667 without restraints) Performing minimization step: 3093. Total energy = 4092.7368 kcal/mol (4091.7785 without restraints) Performing minimization step: 3094. Total energy = 4091.6490 kcal/mol (4090.6912 without restraints) Performing minimization step: 3095. Total energy = 4090.5620 kcal/mol (4089.6046 without restraints) Performing minimization step: 3096. Total energy = 4089.4760 kcal/mol (4088.5191 without restraints) Performing minimization step: 3097. Total energy = 4088.3909 kcal/mol (4087.4344 without restraints) Performing minimization step: 3098. Total energy = 4087.3063 kcal/mol (4086.3504 without restraints) Performing minimization step: 3099. Total energy = 4086.2227 kcal/mol (4085.2671 without restraints) Performing minimization step: 3100. Total energy = 4085.1398 kcal/mol (4084.1847 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 4084.0579 kcal/mol (4083.1033 without restraints) Performing minimization step: 3102. Total energy = 4082.9765 kcal/mol (4082.0223 without restraints) Performing minimization step: 3103. Total energy = 4081.8960 kcal/mol (4080.9423 without restraints) Performing minimization step: 3104. Total energy = 4080.8164 kcal/mol (4079.8631 without restraints) Performing minimization step: 3105. Total energy = 4079.7375 kcal/mol (4078.7848 without restraints) Performing minimization step: 3106. Total energy = 4078.6598 kcal/mol (4077.7075 without restraints) Performing minimization step: 3107. Total energy = 4077.5825 kcal/mol (4076.6307 without restraints) Performing minimization step: 3108. Total energy = 4076.5062 kcal/mol (4075.5548 without restraints) Performing minimization step: 3109. Total energy = 4075.4308 kcal/mol (4074.4799 without restraints) Performing minimization step: 3110. Total energy = 4074.3561 kcal/mol (4073.4057 without restraints) Performing minimization step: 3111. Total energy = 4073.2822 kcal/mol (4072.3322 without restraints) Performing minimization step: 3112. Total energy = 4072.2091 kcal/mol (4071.2596 without restraints) Performing minimization step: 3113. Total energy = 4071.1370 kcal/mol (4070.1880 without restraints) Performing minimization step: 3114. Total energy = 4070.0656 kcal/mol (4069.1171 without restraints) Performing minimization step: 3115. Total energy = 4068.9952 kcal/mol (4068.0470 without restraints) Performing minimization step: 3116. Total energy = 4067.9253 kcal/mol (4066.9776 without restraints) Performing minimization step: 3117. Total energy = 4066.8562 kcal/mol (4065.9090 without restraints) Performing minimization step: 3118. Total energy = 4065.7879 kcal/mol (4064.8411 without restraints) Performing minimization step: 3119. Total energy = 4064.7204 kcal/mol (4063.7741 without restraints) Performing minimization step: 3120. Total energy = 4063.6536 kcal/mol (4062.7076 without restraints) Performing minimization step: 3121. Total energy = 4062.5876 kcal/mol (4061.6422 without restraints) Performing minimization step: 3122. Total energy = 4061.5227 kcal/mol (4060.5778 without restraints) Performing minimization step: 3123. Total energy = 4060.4584 kcal/mol (4059.5139 without restraints) Performing minimization step: 3124. Total energy = 4059.3948 kcal/mol (4058.4508 without restraints) Performing minimization step: 3125. Total energy = 4058.3320 kcal/mol (4057.3885 without restraints) Performing minimization step: 3126. Total energy = 4057.2701 kcal/mol (4056.3270 without restraints) Performing minimization step: 3127. Total energy = 4056.2091 kcal/mol (4055.2665 without restraints) Performing minimization step: 3128. Total energy = 4055.1489 kcal/mol (4054.2068 without restraints) Performing minimization step: 3129. Total energy = 4054.0893 kcal/mol (4053.1476 without restraints) Performing minimization step: 3130. Total energy = 4053.0307 kcal/mol (4052.0894 without restraints) Performing minimization step: 3131. Total energy = 4051.9733 kcal/mol (4051.0325 without restraints) Performing minimization step: 3132. Total energy = 4050.9162 kcal/mol (4049.9759 without restraints) Performing minimization step: 3133. Total energy = 4049.8598 kcal/mol (4048.9201 without restraints) Performing minimization step: 3134. Total energy = 4048.8047 kcal/mol (4047.8652 without restraints) Performing minimization step: 3135. Total energy = 4047.7499 kcal/mol (4046.8110 without restraints) Performing minimization step: 3136. Total energy = 4046.6958 kcal/mol (4045.7573 without restraints) Performing minimization step: 3137. Total energy = 4045.6426 kcal/mol (4044.7046 without restraints) Performing minimization step: 3138. Total energy = 4044.5901 kcal/mol (4043.6525 without restraints) Performing minimization step: 3139. Total energy = 4043.5382 kcal/mol (4042.6011 without restraints) Performing minimization step: 3140. Total energy = 4042.4871 kcal/mol (4041.5505 without restraints) Performing minimization step: 3141. Total energy = 4041.4369 kcal/mol (4040.5007 without restraints) Performing minimization step: 3142. Total energy = 4040.3876 kcal/mol (4039.4518 without restraints) Performing minimization step: 3143. Total energy = 4039.3388 kcal/mol (4038.4035 without restraints) Performing minimization step: 3144. Total energy = 4038.2911 kcal/mol (4037.3564 without restraints) Performing minimization step: 3145. Total energy = 4037.2438 kcal/mol (4036.3095 without restraints) Performing minimization step: 3146. Total energy = 4036.1974 kcal/mol (4035.2635 without restraints) Performing minimization step: 3147. Total energy = 4035.1517 kcal/mol (4034.2183 without restraints) Performing minimization step: 3148. Total energy = 4034.1068 kcal/mol (4033.1736 without restraints) Performing minimization step: 3149. Total energy = 4033.0623 kcal/mol (4032.1297 without restraints) Performing minimization step: 3150. Total energy = 4032.0188 kcal/mol (4031.0868 without restraints) Performing minimization step: 3151. Total energy = 4030.9764 kcal/mol (4030.0448 without restraints) Performing minimization step: 3152. Total energy = 4029.9349 kcal/mol (4029.0037 without restraints) Performing minimization step: 3153. Total energy = 4028.8938 kcal/mol (4027.9632 without restraints) Performing minimization step: 3154. Total energy = 4027.8535 kcal/mol (4026.9233 without restraints) Performing minimization step: 3155. Total energy = 4026.8139 kcal/mol (4025.8841 without restraints) Performing minimization step: 3156. Total energy = 4025.7750 kcal/mol (4024.8457 without restraints) Performing minimization step: 3157. Total energy = 4024.7369 kcal/mol (4023.8080 without restraints) Performing minimization step: 3158. Total energy = 4023.6993 kcal/mol (4022.7709 without restraints) Performing minimization step: 3159. Total energy = 4022.6627 kcal/mol (4021.7347 without restraints) Performing minimization step: 3160. Total energy = 4021.6266 kcal/mol (4020.6991 without restraints) Performing minimization step: 3161. Total energy = 4020.5915 kcal/mol (4019.6644 without restraints) Performing minimization step: 3162. Total energy = 4019.5571 kcal/mol (4018.6304 without restraints) Performing minimization step: 3163. Total energy = 4018.5236 kcal/mol (4017.5974 without restraints) Performing minimization step: 3164. Total energy = 4017.4906 kcal/mol (4016.5649 without restraints) Performing minimization step: 3165. Total energy = 4016.4588 kcal/mol (4015.5337 without restraints) Performing minimization step: 3166. Total energy = 4015.4273 kcal/mol (4014.5025 without restraints) Performing minimization step: 3167. Total energy = 4014.3964 kcal/mol (4013.4721 without restraints) Performing minimization step: 3168. Total energy = 4013.3662 kcal/mol (4012.4423 without restraints) Performing minimization step: 3169. Total energy = 4012.3371 kcal/mol (4011.4136 without restraints) Performing minimization step: 3170. Total energy = 4011.3085 kcal/mol (4010.3855 without restraints) Performing minimization step: 3171. Total energy = 4010.2807 kcal/mol (4009.3582 without restraints) Performing minimization step: 3172. Total energy = 4009.2537 kcal/mol (4008.3318 without restraints) Performing minimization step: 3173. Total energy = 4008.2278 kcal/mol (4007.3061 without restraints) Performing minimization step: 3174. Total energy = 4007.2022 kcal/mol (4006.2810 without restraints) Performing minimization step: 3175. Total energy = 4006.1773 kcal/mol (4005.2566 without restraints) Performing minimization step: 3176. Total energy = 4005.1531 kcal/mol (4004.2329 without restraints) Performing minimization step: 3177. Total energy = 4004.1297 kcal/mol (4003.2099 without restraints) Performing minimization step: 3178. Total energy = 4003.1070 kcal/mol (4002.1876 without restraints) Performing minimization step: 3179. Total energy = 4002.0850 kcal/mol (4001.1661 without restraints) Performing minimization step: 3180. Total energy = 4001.0638 kcal/mol (4000.1454 without restraints) Performing minimization step: 3181. Total energy = 4000.0433 kcal/mol (3999.1253 without restraints) Performing minimization step: 3182. Total energy = 3999.0234 kcal/mol (3998.1059 without restraints) Performing minimization step: 3183. Total energy = 3998.0041 kcal/mol (3997.0870 without restraints) Performing minimization step: 3184. Total energy = 3996.9858 kcal/mol (3996.0691 without restraints) Performing minimization step: 3185. Total energy = 3995.9681 kcal/mol (3995.0519 without restraints) Performing minimization step: 3186. Total energy = 3994.9509 kcal/mol (3994.0352 without restraints) Performing minimization step: 3187. Total energy = 3993.9347 kcal/mol (3993.0194 without restraints) Performing minimization step: 3188. Total energy = 3992.9191 kcal/mol (3992.0043 without restraints) Performing minimization step: 3189. Total energy = 3991.9043 kcal/mol (3990.9899 without restraints) Performing minimization step: 3190. Total energy = 3990.8902 kcal/mol (3989.9763 without restraints) Performing minimization step: 3191. Total energy = 3989.8768 kcal/mol (3988.9633 without restraints) Performing minimization step: 3192. Total energy = 3988.8641 kcal/mol (3987.9511 without restraints) Performing minimization step: 3193. Total energy = 3987.8519 kcal/mol (3986.9393 without restraints) Performing minimization step: 3194. Total energy = 3986.8408 kcal/mol (3985.9288 without restraints) Performing minimization step: 3195. Total energy = 3985.8304 kcal/mol (3984.9187 without restraints) Performing minimization step: 3196. Total energy = 3984.8204 kcal/mol (3983.9092 without restraints) Performing minimization step: 3197. Total energy = 3983.8112 kcal/mol (3982.9005 without restraints) Performing minimization step: 3198. Total energy = 3982.8027 kcal/mol (3981.8924 without restraints) Performing minimization step: 3199. Total energy = 3981.7949 kcal/mol (3980.8850 without restraints) Performing minimization step: 3200. Total energy = 3980.7877 kcal/mol (3979.8783 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 3979.7811 kcal/mol (3978.8721 without restraints) Performing minimization step: 3202. Total energy = 3978.7754 kcal/mol (3977.8669 without restraints) Performing minimization step: 3203. Total energy = 3977.7703 kcal/mol (3976.8623 without restraints) Performing minimization step: 3204. Total energy = 3976.7660 kcal/mol (3975.8584 without restraints) Performing minimization step: 3205. Total energy = 3975.7623 kcal/mol (3974.8551 without restraints) Performing minimization step: 3206. Total energy = 3974.7593 kcal/mol (3973.8525 without restraints) Performing minimization step: 3207. Total energy = 3973.7570 kcal/mol (3972.8507 without restraints) Performing minimization step: 3208. Total energy = 3972.7554 kcal/mol (3971.8496 without restraints) Performing minimization step: 3209. Total energy = 3971.7545 kcal/mol (3970.8491 without restraints) Performing minimization step: 3210. Total energy = 3970.7542 kcal/mol (3969.8493 without restraints) Performing minimization step: 3211. Total energy = 3969.7547 kcal/mol (3968.8502 without restraints) Performing minimization step: 3212. Total energy = 3968.7558 kcal/mol (3967.8518 without restraints) Performing minimization step: 3213. Total energy = 3967.7576 kcal/mol (3966.8540 without restraints) Performing minimization step: 3214. Total energy = 3966.7601 kcal/mol (3965.8570 without restraints) Performing minimization step: 3215. Total energy = 3965.7633 kcal/mol (3964.8607 without restraints) Performing minimization step: 3216. Total energy = 3964.7673 kcal/mol (3963.8651 without restraints) Performing minimization step: 3217. Total energy = 3963.7718 kcal/mol (3962.8700 without restraints) Performing minimization step: 3218. Total energy = 3962.7767 kcal/mol (3961.8754 without restraints) Performing minimization step: 3219. Total energy = 3961.7826 kcal/mol (3960.8817 without restraints) Performing minimization step: 3220. Total energy = 3960.7891 kcal/mol (3959.8886 without restraints) Performing minimization step: 3221. Total energy = 3959.7962 kcal/mol (3958.8962 without restraints) Performing minimization step: 3222. Total energy = 3958.8041 kcal/mol (3957.9045 without restraints) Performing minimization step: 3223. Total energy = 3957.8129 kcal/mol (3956.9138 without restraints) Performing minimization step: 3224. Total energy = 3956.8221 kcal/mol (3955.9234 without restraints) Performing minimization step: 3225. Total energy = 3955.8319 kcal/mol (3954.9337 without restraints) Performing minimization step: 3226. Total energy = 3954.8426 kcal/mol (3953.9448 without restraints) Performing minimization step: 3227. Total energy = 3953.8538 kcal/mol (3952.9564 without restraints) Performing minimization step: 3228. Total energy = 3952.8654 kcal/mol (3951.9685 without restraints) Performing minimization step: 3229. Total energy = 3951.8778 kcal/mol (3950.9814 without restraints) Performing minimization step: 3230. Total energy = 3950.8910 kcal/mol (3949.9950 without restraints) Performing minimization step: 3231. Total energy = 3949.9048 kcal/mol (3949.0092 without restraints) Performing minimization step: 3232. Total energy = 3948.9192 kcal/mol (3948.0241 without restraints) Performing minimization step: 3233. Total energy = 3947.9343 kcal/mol (3947.0397 without restraints) Performing minimization step: 3234. Total energy = 3946.9503 kcal/mol (3946.0561 without restraints) Performing minimization step: 3235. Total energy = 3945.9666 kcal/mol (3945.0727 without restraints) Performing minimization step: 3236. Total energy = 3944.9836 kcal/mol (3944.0903 without restraints) Performing minimization step: 3237. Total energy = 3944.0013 kcal/mol (3943.1084 without restraints) Performing minimization step: 3238. Total energy = 3943.0198 kcal/mol (3942.1273 without restraints) Performing minimization step: 3239. Total energy = 3942.0387 kcal/mol (3941.1467 without restraints) Performing minimization step: 3240. Total energy = 3941.0586 kcal/mol (3940.1671 without restraints) Performing minimization step: 3241. Total energy = 3940.0790 kcal/mol (3939.1881 without restraints) Performing minimization step: 3242. Total energy = 3939.1001 kcal/mol (3938.2094 without restraints) Performing minimization step: 3243. Total energy = 3938.1217 kcal/mol (3937.2314 without restraints) Performing minimization step: 3244. Total energy = 3937.1436 kcal/mol (3936.2539 without restraints) Performing minimization step: 3245. Total energy = 3936.1664 kcal/mol (3935.2771 without restraints) Performing minimization step: 3246. Total energy = 3935.1899 kcal/mol (3934.3010 without restraints) Performing minimization step: 3247. Total energy = 3934.2139 kcal/mol (3933.3255 without restraints) Performing minimization step: 3248. Total energy = 3933.2386 kcal/mol (3932.3506 without restraints) Performing minimization step: 3249. Total energy = 3932.2638 kcal/mol (3931.3762 without restraints) Performing minimization step: 3250. Total energy = 3931.2899 kcal/mol (3930.4027 without restraints) Performing minimization step: 3251. Total energy = 3930.3164 kcal/mol (3929.4297 without restraints) Performing minimization step: 3252. Total energy = 3929.3437 kcal/mol (3928.4574 without restraints) Performing minimization step: 3253. Total energy = 3928.3715 kcal/mol (3927.4858 without restraints) Performing minimization step: 3254. Total energy = 3927.4001 kcal/mol (3926.5147 without restraints) Performing minimization step: 3255. Total energy = 3926.4294 kcal/mol (3925.5447 without restraints) Performing minimization step: 3256. Total energy = 3925.4596 kcal/mol (3924.5751 without restraints) Performing minimization step: 3257. Total energy = 3924.4900 kcal/mol (3923.6060 without restraints) Performing minimization step: 3258. Total energy = 3923.5212 kcal/mol (3922.6376 without restraints) Performing minimization step: 3259. Total energy = 3922.5528 kcal/mol (3921.6696 without restraints) Performing minimization step: 3260. Total energy = 3921.5848 kcal/mol (3920.7021 without restraints) Performing minimization step: 3261. Total energy = 3920.6177 kcal/mol (3919.7355 without restraints) Performing minimization step: 3262. Total energy = 3919.6512 kcal/mol (3918.7694 without restraints) Performing minimization step: 3263. Total energy = 3918.6853 kcal/mol (3917.8039 without restraints) Performing minimization step: 3264. Total energy = 3917.7197 kcal/mol (3916.8388 without restraints) Performing minimization step: 3265. Total energy = 3916.7551 kcal/mol (3915.8746 without restraints) Performing minimization step: 3266. Total energy = 3915.7910 kcal/mol (3914.9109 without restraints) Performing minimization step: 3267. Total energy = 3914.8277 kcal/mol (3913.9481 without restraints) Performing minimization step: 3268. Total energy = 3913.8651 kcal/mol (3912.9859 without restraints) Performing minimization step: 3269. Total energy = 3912.9029 kcal/mol (3912.0241 without restraints) Performing minimization step: 3270. Total energy = 3911.9414 kcal/mol (3911.0631 without restraints) Performing minimization step: 3271. Total energy = 3910.9806 kcal/mol (3910.1028 without restraints) Performing minimization step: 3272. Total energy = 3910.0202 kcal/mol (3909.1428 without restraints) Performing minimization step: 3273. Total energy = 3909.0604 kcal/mol (3908.1834 without restraints) Performing minimization step: 3274. Total energy = 3908.1011 kcal/mol (3907.2246 without restraints) Performing minimization step: 3275. Total energy = 3907.1425 kcal/mol (3906.2664 without restraints) Performing minimization step: 3276. Total energy = 3906.1844 kcal/mol (3905.3088 without restraints) Performing minimization step: 3277. Total energy = 3905.2270 kcal/mol (3904.3518 without restraints) Performing minimization step: 3278. Total energy = 3904.2702 kcal/mol (3903.3954 without restraints) Performing minimization step: 3279. Total energy = 3903.3139 kcal/mol (3902.4396 without restraints) Performing minimization step: 3280. Total energy = 3902.3581 kcal/mol (3901.4842 without restraints) Performing minimization step: 3281. Total energy = 3901.4030 kcal/mol (3900.5295 without restraints) Performing minimization step: 3282. Total energy = 3900.4485 kcal/mol (3899.5754 without restraints) Performing minimization step: 3283. Total energy = 3899.4946 kcal/mol (3898.6220 without restraints) Performing minimization step: 3284. Total energy = 3898.5413 kcal/mol (3897.6692 without restraints) Performing minimization step: 3285. Total energy = 3897.5886 kcal/mol (3896.7169 without restraints) Performing minimization step: 3286. Total energy = 3896.6365 kcal/mol (3895.7652 without restraints) Performing minimization step: 3287. Total energy = 3895.6852 kcal/mol (3894.8143 without restraints) Performing minimization step: 3288. Total energy = 3894.7343 kcal/mol (3893.8638 without restraints) Performing minimization step: 3289. Total energy = 3893.7839 kcal/mol (3892.9139 without restraints) Performing minimization step: 3290. Total energy = 3892.8341 kcal/mol (3891.9645 without restraints) Performing minimization step: 3291. Total energy = 3891.8849 kcal/mol (3891.0158 without restraints) Performing minimization step: 3292. Total energy = 3890.9364 kcal/mol (3890.0678 without restraints) Performing minimization step: 3293. Total energy = 3889.9884 kcal/mol (3889.1201 without restraints) Performing minimization step: 3294. Total energy = 3889.0409 kcal/mol (3888.1731 without restraints) Performing minimization step: 3295. Total energy = 3888.0938 kcal/mol (3887.2263 without restraints) Performing minimization step: 3296. Total energy = 3887.1476 kcal/mol (3886.2806 without restraints) Performing minimization step: 3297. Total energy = 3886.2019 kcal/mol (3885.3353 without restraints) Performing minimization step: 3298. Total energy = 3885.2567 kcal/mol (3884.3905 without restraints) Performing minimization step: 3299. Total energy = 3884.3122 kcal/mol (3883.4465 without restraints) Performing minimization step: 3300. Total energy = 3883.3686 kcal/mol (3882.5033 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 3882.4251 kcal/mol (3881.5603 without restraints) Performing minimization step: 3302. Total energy = 3881.4822 kcal/mol (3880.6178 without restraints) Performing minimization step: 3303. Total energy = 3880.5399 kcal/mol (3879.6759 without restraints) Performing minimization step: 3304. Total energy = 3879.5983 kcal/mol (3878.7348 without restraints) Performing minimization step: 3305. Total energy = 3878.6571 kcal/mol (3877.7940 without restraints) Performing minimization step: 3306. Total energy = 3877.7164 kcal/mol (3876.8538 without restraints) Performing minimization step: 3307. Total energy = 3876.7765 kcal/mol (3875.9142 without restraints) Performing minimization step: 3308. Total energy = 3875.8369 kcal/mol (3874.9751 without restraints) Performing minimization step: 3309. Total energy = 3874.8977 kcal/mol (3874.0364 without restraints) Performing minimization step: 3310. Total energy = 3873.9595 kcal/mol (3873.0985 without restraints) Performing minimization step: 3311. Total energy = 3873.0218 kcal/mol (3872.1613 without restraints) Performing minimization step: 3312. Total energy = 3872.0844 kcal/mol (3871.2244 without restraints) Performing minimization step: 3313. Total energy = 3871.1477 kcal/mol (3870.2880 without restraints) Performing minimization step: 3314. Total energy = 3870.2114 kcal/mol (3869.3522 without restraints) Performing minimization step: 3315. Total energy = 3869.2758 kcal/mol (3868.4170 without restraints) Performing minimization step: 3316. Total energy = 3868.3407 kcal/mol (3867.4823 without restraints) Performing minimization step: 3317. Total energy = 3867.4059 kcal/mol (3866.5480 without restraints) Performing minimization step: 3318. Total energy = 3866.4718 kcal/mol (3865.6143 without restraints) Performing minimization step: 3319. Total energy = 3865.5382 kcal/mol (3864.6811 without restraints) Performing minimization step: 3320. Total energy = 3864.6050 kcal/mol (3863.7484 without restraints) Performing minimization step: 3321. Total energy = 3863.6726 kcal/mol (3862.8164 without restraints) Performing minimization step: 3322. Total energy = 3862.7405 kcal/mol (3861.8847 without restraints) Performing minimization step: 3323. Total energy = 3861.8092 kcal/mol (3860.9538 without restraints) Performing minimization step: 3324. Total energy = 3860.8783 kcal/mol (3860.0234 without restraints) Performing minimization step: 3325. Total energy = 3859.9481 kcal/mol (3859.0936 without restraints) Performing minimization step: 3326. Total energy = 3859.0184 kcal/mol (3858.1643 without restraints) Performing minimization step: 3327. Total energy = 3858.0889 kcal/mol (3857.2353 without restraints) Performing minimization step: 3328. Total energy = 3857.1603 kcal/mol (3856.3070 without restraints) Performing minimization step: 3329. Total energy = 3856.2321 kcal/mol (3855.3793 without restraints) Performing minimization step: 3330. Total energy = 3855.3045 kcal/mol (3854.4522 without restraints) Performing minimization step: 3331. Total energy = 3854.3775 kcal/mol (3853.5255 without restraints) Performing minimization step: 3332. Total energy = 3853.4507 kcal/mol (3852.5992 without restraints) Performing minimization step: 3333. Total energy = 3852.5247 kcal/mol (3851.6736 without restraints) Performing minimization step: 3334. Total energy = 3851.5992 kcal/mol (3850.7485 without restraints) Performing minimization step: 3335. Total energy = 3850.6743 kcal/mol (3849.8242 without restraints) Performing minimization step: 3336. Total energy = 3849.7500 kcal/mol (3848.9002 without restraints) Performing minimization step: 3337. Total energy = 3848.8261 kcal/mol (3847.9767 without restraints) Performing minimization step: 3338. Total energy = 3847.9027 kcal/mol (3847.0538 without restraints) Performing minimization step: 3339. Total energy = 3846.9798 kcal/mol (3846.1313 without restraints) Performing minimization step: 3340. Total energy = 3846.0575 kcal/mol (3845.2093 without restraints) Performing minimization step: 3341. Total energy = 3845.1356 kcal/mol (3844.2879 without restraints) Performing minimization step: 3342. Total energy = 3844.2143 kcal/mol (3843.3670 without restraints) Performing minimization step: 3343. Total energy = 3843.2937 kcal/mol (3842.4471 without restraints) Performing minimization step: 3344. Total energy = 3842.3736 kcal/mol (3841.5272 without restraints) Performing minimization step: 3345. Total energy = 3841.4540 kcal/mol (3840.6081 without restraints) Performing minimization step: 3346. Total energy = 3840.5348 kcal/mol (3839.6892 without restraints) Performing minimization step: 3347. Total energy = 3839.6161 kcal/mol (3838.7709 without restraints) Performing minimization step: 3348. Total energy = 3838.6978 kcal/mol (3837.8530 without restraints) Performing minimization step: 3349. Total energy = 3837.7801 kcal/mol (3836.9357 without restraints) Performing minimization step: 3350. Total energy = 3836.8627 kcal/mol (3836.0187 without restraints) Performing minimization step: 3351. Total energy = 3835.9459 kcal/mol (3835.1024 without restraints) Performing minimization step: 3352. Total energy = 3835.0297 kcal/mol (3834.1866 without restraints) Performing minimization step: 3353. Total energy = 3834.1144 kcal/mol (3833.2717 without restraints) Performing minimization step: 3354. Total energy = 3833.1992 kcal/mol (3832.3569 without restraints) Performing minimization step: 3355. Total energy = 3832.2843 kcal/mol (3831.4425 without restraints) Performing minimization step: 3356. Total energy = 3831.3701 kcal/mol (3830.5287 without restraints) Performing minimization step: 3357. Total energy = 3830.4564 kcal/mol (3829.6154 without restraints) Performing minimization step: 3358. Total energy = 3829.5431 kcal/mol (3828.7026 without restraints) Performing minimization step: 3359. Total energy = 3828.6304 kcal/mol (3827.7903 without restraints) Performing minimization step: 3360. Total energy = 3827.7179 kcal/mol (3826.8782 without restraints) Performing minimization step: 3361. Total energy = 3826.8062 kcal/mol (3825.9669 without restraints) Performing minimization step: 3362. Total energy = 3825.8950 kcal/mol (3825.0561 without restraints) Performing minimization step: 3363. Total energy = 3824.9842 kcal/mol (3824.1457 without restraints) Performing minimization step: 3364. Total energy = 3824.0739 kcal/mol (3823.2359 without restraints) Performing minimization step: 3365. Total energy = 3823.1641 kcal/mol (3822.3265 without restraints) Performing minimization step: 3366. Total energy = 3822.2550 kcal/mol (3821.4179 without restraints) Performing minimization step: 3367. Total energy = 3821.3463 kcal/mol (3820.5095 without restraints) Performing minimization step: 3368. Total energy = 3820.4380 kcal/mol (3819.6016 without restraints) Performing minimization step: 3369. Total energy = 3819.5301 kcal/mol (3818.6942 without restraints) Performing minimization step: 3370. Total energy = 3818.6228 kcal/mol (3817.7873 without restraints) Performing minimization step: 3371. Total energy = 3817.7162 kcal/mol (3816.8810 without restraints) Performing minimization step: 3372. Total energy = 3816.8099 kcal/mol (3815.9753 without restraints) Performing minimization step: 3373. Total energy = 3815.9041 kcal/mol (3815.0698 without restraints) Performing minimization step: 3374. Total energy = 3814.9987 kcal/mol (3814.1648 without restraints) Performing minimization step: 3375. Total energy = 3814.0937 kcal/mol (3813.2602 without restraints) Performing minimization step: 3376. Total energy = 3813.1895 kcal/mol (3812.3566 without restraints) Performing minimization step: 3377. Total energy = 3812.2858 kcal/mol (3811.4532 without restraints) Performing minimization step: 3378. Total energy = 3811.3821 kcal/mol (3810.5499 without restraints) Performing minimization step: 3379. Total energy = 3810.4793 kcal/mol (3809.6475 without restraints) Performing minimization step: 3380. Total energy = 3809.5768 kcal/mol (3808.7454 without restraints) Performing minimization step: 3381. Total energy = 3808.6747 kcal/mol (3807.8437 without restraints) Performing minimization step: 3382. Total energy = 3807.7731 kcal/mol (3806.9427 without restraints) Performing minimization step: 3383. Total energy = 3806.8722 kcal/mol (3806.0421 without restraints) Performing minimization step: 3384. Total energy = 3805.9716 kcal/mol (3805.1418 without restraints) Performing minimization step: 3385. Total energy = 3805.0713 kcal/mol (3804.2419 without restraints) Performing minimization step: 3386. Total energy = 3804.1715 kcal/mol (3803.3426 without restraints) Performing minimization step: 3387. Total energy = 3803.2722 kcal/mol (3802.4437 without restraints) Performing minimization step: 3388. Total energy = 3802.3738 kcal/mol (3801.5457 without restraints) Performing minimization step: 3389. Total energy = 3801.4755 kcal/mol (3800.6478 without restraints) Performing minimization step: 3390. Total energy = 3800.5776 kcal/mol (3799.7503 without restraints) Performing minimization step: 3391. Total energy = 3799.6806 kcal/mol (3798.8539 without restraints) Performing minimization step: 3392. Total energy = 3798.7836 kcal/mol (3797.9571 without restraints) Performing minimization step: 3393. Total energy = 3797.8871 kcal/mol (3797.0610 without restraints) Performing minimization step: 3394. Total energy = 3796.9911 kcal/mol (3796.1655 without restraints) Performing minimization step: 3395. Total energy = 3796.0955 kcal/mol (3795.2703 without restraints) Performing minimization step: 3396. Total energy = 3795.2008 kcal/mol (3794.3760 without restraints) Performing minimization step: 3397. Total energy = 3794.3063 kcal/mol (3793.4820 without restraints) Performing minimization step: 3398. Total energy = 3793.4121 kcal/mol (3792.5882 without restraints) Performing minimization step: 3399. Total energy = 3792.5184 kcal/mol (3791.6948 without restraints) Performing minimization step: 3400. Total energy = 3791.6251 kcal/mol (3790.8019 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 3790.7323 kcal/mol (3789.9095 without restraints) Performing minimization step: 3402. Total energy = 3789.8397 kcal/mol (3789.0175 without restraints) Performing minimization step: 3403. Total energy = 3788.9479 kcal/mol (3788.1260 without restraints) Performing minimization step: 3404. Total energy = 3788.0562 kcal/mol (3787.2347 without restraints) Performing minimization step: 3405. Total energy = 3787.1653 kcal/mol (3786.3443 without restraints) Performing minimization step: 3406. Total energy = 3786.2747 kcal/mol (3785.4541 without restraints) Performing minimization step: 3407. Total energy = 3785.3848 kcal/mol (3784.5645 without restraints) Performing minimization step: 3408. Total energy = 3784.4951 kcal/mol (3783.6753 without restraints) Performing minimization step: 3409. Total energy = 3783.6059 kcal/mol (3782.7864 without restraints) Performing minimization step: 3410. Total energy = 3782.7171 kcal/mol (3781.8981 without restraints) Performing minimization step: 3411. Total energy = 3781.8288 kcal/mol (3781.0101 without restraints) Performing minimization step: 3412. Total energy = 3780.9409 kcal/mol (3780.1226 without restraints) Performing minimization step: 3413. Total energy = 3780.0534 kcal/mol (3779.2356 without restraints) Performing minimization step: 3414. Total energy = 3779.1670 kcal/mol (3778.3498 without restraints) Performing minimization step: 3415. Total energy = 3778.2807 kcal/mol (3777.4636 without restraints) Performing minimization step: 3416. Total energy = 3777.3945 kcal/mol (3776.5779 without restraints) Performing minimization step: 3417. Total energy = 3776.5089 kcal/mol (3775.6927 without restraints) Performing minimization step: 3418. Total energy = 3775.6237 kcal/mol (3774.8079 without restraints) Performing minimization step: 3419. Total energy = 3774.7389 kcal/mol (3773.9236 without restraints) Performing minimization step: 3420. Total energy = 3773.8549 kcal/mol (3773.0399 without restraints) Performing minimization step: 3421. Total energy = 3772.9710 kcal/mol (3772.1564 without restraints) Performing minimization step: 3422. Total energy = 3772.0875 kcal/mol (3771.2733 without restraints) Performing minimization step: 3423. Total energy = 3771.2045 kcal/mol (3770.3907 without restraints) Performing minimization step: 3424. Total energy = 3770.3219 kcal/mol (3769.5085 without restraints) Performing minimization step: 3425. Total energy = 3769.4397 kcal/mol (3768.6267 without restraints) Performing minimization step: 3426. Total energy = 3768.5579 kcal/mol (3767.7454 without restraints) Performing minimization step: 3427. Total energy = 3767.6768 kcal/mol (3766.8647 without restraints) Performing minimization step: 3428. Total energy = 3766.7962 kcal/mol (3765.9845 without restraints) Performing minimization step: 3429. Total energy = 3765.9158 kcal/mol (3765.1044 without restraints) Performing minimization step: 3430. Total energy = 3765.0358 kcal/mol (3764.2248 without restraints) Performing minimization step: 3431. Total energy = 3764.1565 kcal/mol (3763.3460 without restraints) Performing minimization step: 3432. Total energy = 3763.2774 kcal/mol (3762.4672 without restraints) Performing minimization step: 3433. Total energy = 3762.3987 kcal/mol (3761.5889 without restraints) Performing minimization step: 3434. Total energy = 3761.5204 kcal/mol (3760.7111 without restraints) Performing minimization step: 3435. Total energy = 3760.6426 kcal/mol (3759.8336 without restraints) Performing minimization step: 3436. Total energy = 3759.7652 kcal/mol (3758.9566 without restraints) Performing minimization step: 3437. Total energy = 3758.8882 kcal/mol (3758.0800 without restraints) Performing minimization step: 3438. Total energy = 3758.0116 kcal/mol (3757.2039 without restraints) Performing minimization step: 3439. Total energy = 3757.1356 kcal/mol (3756.3283 without restraints) Performing minimization step: 3440. Total energy = 3756.2600 kcal/mol (3755.4530 without restraints) Performing minimization step: 3441. Total energy = 3755.3845 kcal/mol (3754.5780 without restraints) Performing minimization step: 3442. Total energy = 3754.5096 kcal/mol (3753.7035 without restraints) Performing minimization step: 3443. Total energy = 3753.6354 kcal/mol (3752.8297 without restraints) Performing minimization step: 3444. Total energy = 3752.7614 kcal/mol (3751.9561 without restraints) Performing minimization step: 3445. Total energy = 3751.8879 kcal/mol (3751.0831 without restraints) Performing minimization step: 3446. Total energy = 3751.0150 kcal/mol (3750.2105 without restraints) Performing minimization step: 3447. Total energy = 3750.1424 kcal/mol (3749.3382 without restraints) Performing minimization step: 3448. Total energy = 3749.2701 kcal/mol (3748.4664 without restraints) Performing minimization step: 3449. Total energy = 3748.3982 kcal/mol (3747.5949 without restraints) Performing minimization step: 3450. Total energy = 3747.5270 kcal/mol (3746.7240 without restraints) Performing minimization step: 3451. Total energy = 3746.6561 kcal/mol (3745.8536 without restraints) Performing minimization step: 3452. Total energy = 3745.7856 kcal/mol (3744.9834 without restraints) Performing minimization step: 3453. Total energy = 3744.9154 kcal/mol (3744.1137 without restraints) Performing minimization step: 3454. Total energy = 3744.0456 kcal/mol (3743.2443 without restraints) Performing minimization step: 3455. Total energy = 3743.1763 kcal/mol (3742.3754 without restraints) Performing minimization step: 3456. Total energy = 3742.3074 kcal/mol (3741.5069 without restraints) Performing minimization step: 3457. Total energy = 3741.4392 kcal/mol (3740.6390 without restraints) Performing minimization step: 3458. Total energy = 3740.5711 kcal/mol (3739.7714 without restraints) Performing minimization step: 3459. Total energy = 3739.7035 kcal/mol (3738.9042 without restraints) Performing minimization step: 3460. Total energy = 3738.8363 kcal/mol (3738.0374 without restraints) Performing minimization step: 3461. Total energy = 3737.9696 kcal/mol (3737.1710 without restraints) Performing minimization step: 3462. Total energy = 3737.1034 kcal/mol (3736.3053 without restraints) Performing minimization step: 3463. Total energy = 3736.2375 kcal/mol (3735.4397 without restraints) Performing minimization step: 3464. Total energy = 3735.3720 kcal/mol (3734.5746 without restraints) Performing minimization step: 3465. Total energy = 3734.5069 kcal/mol (3733.7100 without restraints) Performing minimization step: 3466. Total energy = 3733.6423 kcal/mol (3732.8457 without restraints) Performing minimization step: 3467. Total energy = 3732.7782 kcal/mol (3731.9821 without restraints) Performing minimization step: 3468. Total energy = 3731.9146 kcal/mol (3731.1189 without restraints) Performing minimization step: 3469. Total energy = 3731.0512 kcal/mol (3730.2558 without restraints) Performing minimization step: 3470. Total energy = 3730.1882 kcal/mol (3729.3933 without restraints) Performing minimization step: 3471. Total energy = 3729.3257 kcal/mol (3728.5311 without restraints) Performing minimization step: 3472. Total energy = 3728.4638 kcal/mol (3727.6696 without restraints) Performing minimization step: 3473. Total energy = 3727.6021 kcal/mol (3726.8083 without restraints) Performing minimization step: 3474. Total energy = 3726.7408 kcal/mol (3725.9474 without restraints) Performing minimization step: 3475. Total energy = 3725.8799 kcal/mol (3725.0869 without restraints) Performing minimization step: 3476. Total energy = 3725.0194 kcal/mol (3724.2269 without restraints) Performing minimization step: 3477. Total energy = 3724.1595 kcal/mol (3723.3673 without restraints) Performing minimization step: 3478. Total energy = 3723.2999 kcal/mol (3722.5081 without restraints) Performing minimization step: 3479. Total energy = 3722.4414 kcal/mol (3721.6501 without restraints) Performing minimization step: 3480. Total energy = 3721.5829 kcal/mol (3720.7919 without restraints) Performing minimization step: 3481. Total energy = 3720.7246 kcal/mol (3719.9340 without restraints) Performing minimization step: 3482. Total energy = 3719.8667 kcal/mol (3719.0765 without restraints) Performing minimization step: 3483. Total energy = 3719.0090 kcal/mol (3718.2190 without restraints) Performing minimization step: 3484. Total energy = 3718.1518 kcal/mol (3717.3624 without restraints) Performing minimization step: 3485. Total energy = 3717.2952 kcal/mol (3716.5061 without restraints) Performing minimization step: 3486. Total energy = 3716.4389 kcal/mol (3715.6503 without restraints) Performing minimization step: 3487. Total energy = 3715.5831 kcal/mol (3714.7949 without restraints) Performing minimization step: 3488. Total energy = 3714.7276 kcal/mol (3713.9396 without restraints) Performing minimization step: 3489. Total energy = 3713.8725 kcal/mol (3713.0850 without restraints) Performing minimization step: 3490. Total energy = 3713.0181 kcal/mol (3712.2311 without restraints) Performing minimization step: 3491. Total energy = 3712.1642 kcal/mol (3711.3776 without restraints) Performing minimization step: 3492. Total energy = 3711.3105 kcal/mol (3710.5242 without restraints) Performing minimization step: 3493. Total energy = 3710.4573 kcal/mol (3709.6714 without restraints) Performing minimization step: 3494. Total energy = 3709.6045 kcal/mol (3708.8192 without restraints) Performing minimization step: 3495. Total energy = 3708.7523 kcal/mol (3707.9672 without restraints) Performing minimization step: 3496. Total energy = 3707.9003 kcal/mol (3707.1156 without restraints) Performing minimization step: 3497. Total energy = 3707.0488 kcal/mol (3706.2645 without restraints) Performing minimization step: 3498. Total energy = 3706.1977 kcal/mol (3705.4138 without restraints) Performing minimization step: 3499. Total energy = 3705.3472 kcal/mol (3704.5638 without restraints) Performing minimization step: 3500. Total energy = 3704.4970 kcal/mol (3703.7139 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 3703.6470 kcal/mol (3702.8643 without restraints) Performing minimization step: 3502. Total energy = 3702.7976 kcal/mol (3702.0153 without restraints) Performing minimization step: 3503. Total energy = 3701.9486 kcal/mol (3701.1667 without restraints) Performing minimization step: 3504. Total energy = 3701.1002 kcal/mol (3700.3187 without restraints) Performing minimization step: 3505. Total energy = 3700.2522 kcal/mol (3699.4710 without restraints) Performing minimization step: 3506. Total energy = 3699.4046 kcal/mol (3698.6238 without restraints) Performing minimization step: 3507. Total energy = 3698.5573 kcal/mol (3697.7769 without restraints) Performing minimization step: 3508. Total energy = 3697.7105 kcal/mol (3696.9306 without restraints) Performing minimization step: 3509. Total energy = 3696.8641 kcal/mol (3696.0845 without restraints) Performing minimization step: 3510. Total energy = 3696.0181 kcal/mol (3695.2389 without restraints) Performing minimization step: 3511. Total energy = 3695.1726 kcal/mol (3694.3938 without restraints) Performing minimization step: 3512. Total energy = 3694.3275 kcal/mol (3693.5491 without restraints) Performing minimization step: 3513. Total energy = 3693.4829 kcal/mol (3692.7049 without restraints) Performing minimization step: 3514. Total energy = 3692.6387 kcal/mol (3691.8611 without restraints) Performing minimization step: 3515. Total energy = 3691.7949 kcal/mol (3691.0177 without restraints) Performing minimization step: 3516. Total energy = 3690.9516 kcal/mol (3690.1748 without restraints) Performing minimization step: 3517. Total energy = 3690.1087 kcal/mol (3689.3322 without restraints) Performing minimization step: 3518. Total energy = 3689.2660 kcal/mol (3688.4899 without restraints) Performing minimization step: 3519. Total energy = 3688.4239 kcal/mol (3687.6482 without restraints) Performing minimization step: 3520. Total energy = 3687.5823 kcal/mol (3686.8070 without restraints) Performing minimization step: 3521. Total energy = 3686.7411 kcal/mol (3685.9663 without restraints) Performing minimization step: 3522. Total energy = 3685.9006 kcal/mol (3685.1261 without restraints) Performing minimization step: 3523. Total energy = 3685.0606 kcal/mol (3684.2865 without restraints) Performing minimization step: 3524. Total energy = 3684.2207 kcal/mol (3683.4470 without restraints) Performing minimization step: 3525. Total energy = 3683.3814 kcal/mol (3682.6080 without restraints) Performing minimization step: 3526. Total energy = 3682.5424 kcal/mol (3681.7695 without restraints) Performing minimization step: 3527. Total energy = 3681.7043 kcal/mol (3680.9319 without restraints) Performing minimization step: 3528. Total energy = 3680.8664 kcal/mol (3680.0942 without restraints) Performing minimization step: 3529. Total energy = 3680.0286 kcal/mol (3679.2568 without restraints) Performing minimization step: 3530. Total energy = 3679.1917 kcal/mol (3678.4205 without restraints) Performing minimization step: 3531. Total energy = 3678.3552 kcal/mol (3677.5844 without restraints) Performing minimization step: 3532. Total energy = 3677.5191 kcal/mol (3676.7485 without restraints) Performing minimization step: 3533. Total energy = 3676.6833 kcal/mol (3675.9131 without restraints) Performing minimization step: 3534. Total energy = 3675.8479 kcal/mol (3675.0781 without restraints) Performing minimization step: 3535. Total energy = 3675.0130 kcal/mol (3674.2436 without restraints) Performing minimization step: 3536. Total energy = 3674.1785 kcal/mol (3673.4095 without restraints) Performing minimization step: 3537. Total energy = 3673.3443 kcal/mol (3672.5757 without restraints) Performing minimization step: 3538. Total energy = 3672.5108 kcal/mol (3671.7426 without restraints) Performing minimization step: 3539. Total energy = 3671.6778 kcal/mol (3670.9099 without restraints) Performing minimization step: 3540. Total energy = 3670.8451 kcal/mol (3670.0777 without restraints) Performing minimization step: 3541. Total energy = 3670.0129 kcal/mol (3669.2459 without restraints) Performing minimization step: 3542. Total energy = 3669.1812 kcal/mol (3668.4146 without restraints) Performing minimization step: 3543. Total energy = 3668.3500 kcal/mol (3667.5837 without restraints) Performing minimization step: 3544. Total energy = 3667.5193 kcal/mol (3666.7535 without restraints) Performing minimization step: 3545. Total energy = 3666.6892 kcal/mol (3665.9237 without restraints) Performing minimization step: 3546. Total energy = 3665.8594 kcal/mol (3665.0943 without restraints) Performing minimization step: 3547. Total energy = 3665.0299 kcal/mol (3664.2652 without restraints) Performing minimization step: 3548. Total energy = 3664.2009 kcal/mol (3663.4366 without restraints) Performing minimization step: 3549. Total energy = 3663.3725 kcal/mol (3662.6085 without restraints) Performing minimization step: 3550. Total energy = 3662.5444 kcal/mol (3661.7809 without restraints) Performing minimization step: 3551. Total energy = 3661.7169 kcal/mol (3660.9537 without restraints) Performing minimization step: 3552. Total energy = 3660.8898 kcal/mol (3660.1270 without restraints) Performing minimization step: 3553. Total energy = 3660.0633 kcal/mol (3659.3009 without restraints) Performing minimization step: 3554. Total energy = 3659.2372 kcal/mol (3658.4754 without restraints) Performing minimization step: 3555. Total energy = 3658.4117 kcal/mol (3657.6501 without restraints) Performing minimization step: 3556. Total energy = 3657.5865 kcal/mol (3656.8253 without restraints) Performing minimization step: 3557. Total energy = 3656.7614 kcal/mol (3656.0006 without restraints) Performing minimization step: 3558. Total energy = 3655.9372 kcal/mol (3655.1768 without restraints) Performing minimization step: 3559. Total energy = 3655.1135 kcal/mol (3654.3535 without restraints) Performing minimization step: 3560. Total energy = 3654.2902 kcal/mol (3653.5306 without restraints) Performing minimization step: 3561. Total energy = 3653.4674 kcal/mol (3652.7081 without restraints) Performing minimization step: 3562. Total energy = 3652.6451 kcal/mol (3651.8863 without restraints) Performing minimization step: 3563. Total energy = 3651.8233 kcal/mol (3651.0648 without restraints) Performing minimization step: 3564. Total energy = 3651.0021 kcal/mol (3650.2440 without restraints) Performing minimization step: 3565. Total energy = 3650.1812 kcal/mol (3649.4235 without restraints) Performing minimization step: 3566. Total energy = 3649.3608 kcal/mol (3648.6035 without restraints) Performing minimization step: 3567. Total energy = 3648.5408 kcal/mol (3647.7839 without restraints) Performing minimization step: 3568. Total energy = 3647.7214 kcal/mol (3646.9650 without restraints) Performing minimization step: 3569. Total energy = 3646.9025 kcal/mol (3646.1465 without restraints) Performing minimization step: 3570. Total energy = 3646.0841 kcal/mol (3645.3284 without restraints) Performing minimization step: 3571. Total energy = 3645.2664 kcal/mol (3644.5110 without restraints) Performing minimization step: 3572. Total energy = 3644.4489 kcal/mol (3643.6940 without restraints) Performing minimization step: 3573. Total energy = 3643.6319 kcal/mol (3642.8773 without restraints) Performing minimization step: 3574. Total energy = 3642.8153 kcal/mol (3642.0612 without restraints) Performing minimization step: 3575. Total energy = 3641.9994 kcal/mol (3641.2456 without restraints) Performing minimization step: 3576. Total energy = 3641.1840 kcal/mol (3640.4307 without restraints) Performing minimization step: 3577. Total energy = 3640.3690 kcal/mol (3639.6159 without restraints) Performing minimization step: 3578. Total energy = 3639.5542 kcal/mol (3638.8017 without restraints) Performing minimization step: 3579. Total energy = 3638.7402 kcal/mol (3637.9880 without restraints) Performing minimization step: 3580. Total energy = 3637.9267 kcal/mol (3637.1749 without restraints) Performing minimization step: 3581. Total energy = 3637.1137 kcal/mol (3636.3623 without restraints) Performing minimization step: 3582. Total energy = 3636.3012 kcal/mol (3635.5502 without restraints) Performing minimization step: 3583. Total energy = 3635.4890 kcal/mol (3634.7384 without restraints) Performing minimization step: 3584. Total energy = 3634.6777 kcal/mol (3633.9274 without restraints) Performing minimization step: 3585. Total energy = 3633.8667 kcal/mol (3633.1169 without restraints) Performing minimization step: 3586. Total energy = 3633.0560 kcal/mol (3632.3066 without restraints) Performing minimization step: 3587. Total energy = 3632.2461 kcal/mol (3631.4970 without restraints) Performing minimization step: 3588. Total energy = 3631.4366 kcal/mol (3630.6879 without restraints) Performing minimization step: 3589. Total energy = 3630.6276 kcal/mol (3629.8793 without restraints) Performing minimization step: 3590. Total energy = 3629.8192 kcal/mol (3629.0713 without restraints) Performing minimization step: 3591. Total energy = 3629.0112 kcal/mol (3628.2637 without restraints) Performing minimization step: 3592. Total energy = 3628.2038 kcal/mol (3627.4567 without restraints) Performing minimization step: 3593. Total energy = 3627.3969 kcal/mol (3626.6502 without restraints) Performing minimization step: 3594. Total energy = 3626.5907 kcal/mol (3625.8445 without restraints) Performing minimization step: 3595. Total energy = 3625.7851 kcal/mol (3625.0392 without restraints) Performing minimization step: 3596. Total energy = 3624.9798 kcal/mol (3624.2343 without restraints) Performing minimization step: 3597. Total energy = 3624.1750 kcal/mol (3623.4299 without restraints) Performing minimization step: 3598. Total energy = 3623.3707 kcal/mol (3622.6260 without restraints) Performing minimization step: 3599. Total energy = 3622.5669 kcal/mol (3621.8226 without restraints) Performing minimization step: 3600. Total energy = 3621.7635 kcal/mol (3621.0195 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 3620.9608 kcal/mol (3620.2172 without restraints) Performing minimization step: 3602. Total energy = 3620.1586 kcal/mol (3619.4154 without restraints) Performing minimization step: 3603. Total energy = 3619.3567 kcal/mol (3618.6139 without restraints) Performing minimization step: 3604. Total energy = 3618.5557 kcal/mol (3617.8133 without restraints) Performing minimization step: 3605. Total energy = 3617.7551 kcal/mol (3617.0131 without restraints) Performing minimization step: 3606. Total energy = 3616.9550 kcal/mol (3616.2134 without restraints) Performing minimization step: 3607. Total energy = 3616.1556 kcal/mol (3615.4143 without restraints) Performing minimization step: 3608. Total energy = 3615.3566 kcal/mol (3614.6158 without restraints) Performing minimization step: 3609. Total energy = 3614.5581 kcal/mol (3613.8177 without restraints) Performing minimization step: 3610. Total energy = 3613.7607 kcal/mol (3613.0206 without restraints) Performing minimization step: 3611. Total energy = 3612.9636 kcal/mol (3612.2239 without restraints) Performing minimization step: 3612. Total energy = 3612.1668 kcal/mol (3611.4275 without restraints) Performing minimization step: 3613. Total energy = 3611.3705 kcal/mol (3610.6316 without restraints) Performing minimization step: 3614. Total energy = 3610.5748 kcal/mol (3609.8363 without restraints) Performing minimization step: 3615. Total energy = 3609.7800 kcal/mol (3609.0420 without restraints) Performing minimization step: 3616. Total energy = 3608.9855 kcal/mol (3608.2478 without restraints) Performing minimization step: 3617. Total energy = 3608.1914 kcal/mol (3607.4541 without restraints) Performing minimization step: 3618. Total energy = 3607.3979 kcal/mol (3606.6610 without restraints) Performing minimization step: 3619. Total energy = 3606.6049 kcal/mol (3605.8685 without restraints) Performing minimization step: 3620. Total energy = 3605.8126 kcal/mol (3605.0765 without restraints) Performing minimization step: 3621. Total energy = 3605.0207 kcal/mol (3604.2850 without restraints) Performing minimization step: 3622. Total energy = 3604.2294 kcal/mol (3603.4941 without restraints) Performing minimization step: 3623. Total energy = 3603.4386 kcal/mol (3602.7037 without restraints) Performing minimization step: 3624. Total energy = 3602.6486 kcal/mol (3601.9141 without restraints) Performing minimization step: 3625. Total energy = 3601.8589 kcal/mol (3601.1248 without restraints) Performing minimization step: 3626. Total energy = 3601.0699 kcal/mol (3600.3361 without restraints) Performing minimization step: 3627. Total energy = 3600.2816 kcal/mol (3599.5483 without restraints) Performing minimization step: 3628. Total energy = 3599.4936 kcal/mol (3598.7607 without restraints) Performing minimization step: 3629. Total energy = 3598.7062 kcal/mol (3597.9736 without restraints) Performing minimization step: 3630. Total energy = 3597.9197 kcal/mol (3597.1876 without restraints) Performing minimization step: 3631. Total energy = 3597.1335 kcal/mol (3596.4017 without restraints) Performing minimization step: 3632. Total energy = 3596.3477 kcal/mol (3595.6163 without restraints) Performing minimization step: 3633. Total energy = 3595.5626 kcal/mol (3594.8316 without restraints) Performing minimization step: 3634. Total energy = 3594.7780 kcal/mol (3594.0474 without restraints) Performing minimization step: 3635. Total energy = 3593.9943 kcal/mol (3593.2640 without restraints) Performing minimization step: 3636. Total energy = 3593.2108 kcal/mol (3592.4810 without restraints) Performing minimization step: 3637. Total energy = 3592.4279 kcal/mol (3591.6985 without restraints) Performing minimization step: 3638. Total energy = 3591.6457 kcal/mol (3590.9166 without restraints) Performing minimization step: 3639. Total energy = 3590.8639 kcal/mol (3590.1353 without restraints) Performing minimization step: 3640. Total energy = 3590.0828 kcal/mol (3589.3545 without restraints) Performing minimization step: 3641. Total energy = 3589.3023 kcal/mol (3588.5744 without restraints) Performing minimization step: 3642. Total energy = 3588.5221 kcal/mol (3587.7947 without restraints) Performing minimization step: 3643. Total energy = 3587.7427 kcal/mol (3587.0157 without restraints) Performing minimization step: 3644. Total energy = 3586.9641 kcal/mol (3586.2374 without restraints) Performing minimization step: 3645. Total energy = 3586.1862 kcal/mol (3585.4600 without restraints) Performing minimization step: 3646. Total energy = 3585.4086 kcal/mol (3584.6827 without restraints) Performing minimization step: 3647. Total energy = 3584.6315 kcal/mol (3583.9060 without restraints) Performing minimization step: 3648. Total energy = 3583.8550 kcal/mol (3583.1299 without restraints) Performing minimization step: 3649. Total energy = 3583.0792 kcal/mol (3582.3546 without restraints) Performing minimization step: 3650. Total energy = 3582.3040 kcal/mol (3581.5797 without restraints) Performing minimization step: 3651. Total energy = 3581.5293 kcal/mol (3580.8054 without restraints) Performing minimization step: 3652. Total energy = 3580.7551 kcal/mol (3580.0316 without restraints) Performing minimization step: 3653. Total energy = 3579.9816 kcal/mol (3579.2585 without restraints) Performing minimization step: 3654. Total energy = 3579.2086 kcal/mol (3578.4859 without restraints) Performing minimization step: 3655. Total energy = 3578.4363 kcal/mol (3577.7139 without restraints) Performing minimization step: 3656. Total energy = 3577.6645 kcal/mol (3576.9426 without restraints) Performing minimization step: 3657. Total energy = 3576.8936 kcal/mol (3576.1720 without restraints) Performing minimization step: 3658. Total energy = 3576.1231 kcal/mol (3575.4018 without restraints) Performing minimization step: 3659. Total energy = 3575.3532 kcal/mol (3574.6324 without restraints) Performing minimization step: 3660. Total energy = 3574.5838 kcal/mol (3573.8635 without restraints) Performing minimization step: 3661. Total energy = 3573.8150 kcal/mol (3573.0951 without restraints) Performing minimization step: 3662. Total energy = 3573.0471 kcal/mol (3572.3275 without restraints) Performing minimization step: 3663. Total energy = 3572.2795 kcal/mol (3571.5603 without restraints) Performing minimization step: 3664. Total energy = 3571.5127 kcal/mol (3570.7939 without restraints) Performing minimization step: 3665. Total energy = 3570.7463 kcal/mol (3570.0279 without restraints) Performing minimization step: 3666. Total energy = 3569.9805 kcal/mol (3569.2625 without restraints) Performing minimization step: 3667. Total energy = 3569.2156 kcal/mol (3568.4980 without restraints) Performing minimization step: 3668. Total energy = 3568.4510 kcal/mol (3567.7338 without restraints) Performing minimization step: 3669. Total energy = 3567.6868 kcal/mol (3566.9700 without restraints) Performing minimization step: 3670. Total energy = 3566.9235 kcal/mol (3566.2071 without restraints) Performing minimization step: 3671. Total energy = 3566.1608 kcal/mol (3565.4447 without restraints) Performing minimization step: 3672. Total energy = 3565.3986 kcal/mol (3564.6830 without restraints) Performing minimization step: 3673. Total energy = 3564.6372 kcal/mol (3563.9220 without restraints) Performing minimization step: 3674. Total energy = 3563.8765 kcal/mol (3563.1617 without restraints) Performing minimization step: 3675. Total energy = 3563.1163 kcal/mol (3562.4018 without restraints) Performing minimization step: 3676. Total energy = 3562.3566 kcal/mol (3561.6425 without restraints) Performing minimization step: 3677. Total energy = 3561.5973 kcal/mol (3560.8835 without restraints) Performing minimization step: 3678. Total energy = 3560.8387 kcal/mol (3560.1255 without restraints) Performing minimization step: 3679. Total energy = 3560.0812 kcal/mol (3559.3684 without restraints) Performing minimization step: 3680. Total energy = 3559.3238 kcal/mol (3558.6113 without restraints) Performing minimization step: 3681. Total energy = 3558.5672 kcal/mol (3557.8551 without restraints) Performing minimization step: 3682. Total energy = 3557.8109 kcal/mol (3557.0993 without restraints) Performing minimization step: 3683. Total energy = 3557.0555 kcal/mol (3556.3443 without restraints) Performing minimization step: 3684. Total energy = 3556.3007 kcal/mol (3555.5899 without restraints) Performing minimization step: 3685. Total energy = 3555.5468 kcal/mol (3554.8363 without restraints) Performing minimization step: 3686. Total energy = 3554.7930 kcal/mol (3554.0829 without restraints) Performing minimization step: 3687. Total energy = 3554.0401 kcal/mol (3553.3304 without restraints) Performing minimization step: 3688. Total energy = 3553.2878 kcal/mol (3552.5785 without restraints) Performing minimization step: 3689. Total energy = 3552.5361 kcal/mol (3551.8272 without restraints) Performing minimization step: 3690. Total energy = 3551.7852 kcal/mol (3551.0767 without restraints) Performing minimization step: 3691. Total energy = 3551.0348 kcal/mol (3550.3267 without restraints) Performing minimization step: 3692. Total energy = 3550.2850 kcal/mol (3549.5773 without restraints) Performing minimization step: 3693. Total energy = 3549.5358 kcal/mol (3548.8285 without restraints) Performing minimization step: 3694. Total energy = 3548.7872 kcal/mol (3548.0803 without restraints) Performing minimization step: 3695. Total energy = 3548.0393 kcal/mol (3547.3328 without restraints) Performing minimization step: 3696. Total energy = 3547.2920 kcal/mol (3546.5859 without restraints) Performing minimization step: 3697. Total energy = 3546.5453 kcal/mol (3545.8396 without restraints) Performing minimization step: 3698. Total energy = 3545.7993 kcal/mol (3545.0939 without restraints) Performing minimization step: 3699. Total energy = 3545.0538 kcal/mol (3544.3489 without restraints) Performing minimization step: 3700. Total energy = 3544.3090 kcal/mol (3543.6045 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 3543.5649 kcal/mol (3542.8607 without restraints) Performing minimization step: 3702. Total energy = 3542.8213 kcal/mol (3542.1176 without restraints) Performing minimization step: 3703. Total energy = 3542.0786 kcal/mol (3541.3752 without restraints) Performing minimization step: 3704. Total energy = 3541.3363 kcal/mol (3540.6333 without restraints) Performing minimization step: 3705. Total energy = 3540.5948 kcal/mol (3539.8923 without restraints) Performing minimization step: 3706. Total energy = 3539.8538 kcal/mol (3539.1516 without restraints) Performing minimization step: 3707. Total energy = 3539.1136 kcal/mol (3538.4118 without restraints) Performing minimization step: 3708. Total energy = 3538.3742 kcal/mol (3537.6728 without restraints) Performing minimization step: 3709. Total energy = 3537.6351 kcal/mol (3536.9341 without restraints) Performing minimization step: 3710. Total energy = 3536.8966 kcal/mol (3536.1960 without restraints) Performing minimization step: 3711. Total energy = 3536.1587 kcal/mol (3535.4585 without restraints) Performing minimization step: 3712. Total energy = 3535.4214 kcal/mol (3534.7214 without restraints) Performing minimization step: 3713. Total energy = 3534.6845 kcal/mol (3533.9851 without restraints) Performing minimization step: 3714. Total energy = 3533.9487 kcal/mol (3533.2497 without restraints) Performing minimization step: 3715. Total energy = 3533.2134 kcal/mol (3532.5148 without restraints) Performing minimization step: 3716. Total energy = 3532.4787 kcal/mol (3531.7805 without restraints) Performing minimization step: 3717. Total energy = 3531.7447 kcal/mol (3531.0468 without restraints) Performing minimization step: 3718. Total energy = 3531.0112 kcal/mol (3530.3138 without restraints) Performing minimization step: 3719. Total energy = 3530.2787 kcal/mol (3529.5817 without restraints) Performing minimization step: 3720. Total energy = 3529.5466 kcal/mol (3528.8499 without restraints) Performing minimization step: 3721. Total energy = 3528.8152 kcal/mol (3528.1191 without restraints) Performing minimization step: 3722. Total energy = 3528.0845 kcal/mol (3527.3886 without restraints) Performing minimization step: 3723. Total energy = 3527.3542 kcal/mol (3526.6588 without restraints) Performing minimization step: 3724. Total energy = 3526.6247 kcal/mol (3525.9296 without restraints) Performing minimization step: 3725. Total energy = 3525.8957 kcal/mol (3525.2010 without restraints) Performing minimization step: 3726. Total energy = 3525.1674 kcal/mol (3524.4731 without restraints) Performing minimization step: 3727. Total energy = 3524.4398 kcal/mol (3523.7458 without restraints) Performing minimization step: 3728. Total energy = 3523.7127 kcal/mol (3523.0192 without restraints) Performing minimization step: 3729. Total energy = 3522.9862 kcal/mol (3522.2931 without restraints) Performing minimization step: 3730. Total energy = 3522.2606 kcal/mol (3521.5680 without restraints) Performing minimization step: 3731. Total energy = 3521.5356 kcal/mol (3520.8432 without restraints) Performing minimization step: 3732. Total energy = 3520.8110 kcal/mol (3520.1191 without restraints) Performing minimization step: 3733. Total energy = 3520.0871 kcal/mol (3519.3955 without restraints) Performing minimization step: 3734. Total energy = 3519.3638 kcal/mol (3518.6726 without restraints) Performing minimization step: 3735. Total energy = 3518.6412 kcal/mol (3517.9504 without restraints) Performing minimization step: 3736. Total energy = 3517.9193 kcal/mol (3517.2289 without restraints) Performing minimization step: 3737. Total energy = 3517.1978 kcal/mol (3516.5078 without restraints) Performing minimization step: 3738. Total energy = 3516.4771 kcal/mol (3515.7875 without restraints) Performing minimization step: 3739. Total energy = 3515.7570 kcal/mol (3515.0678 without restraints) Performing minimization step: 3740. Total energy = 3515.0376 kcal/mol (3514.3488 without restraints) Performing minimization step: 3741. Total energy = 3514.3189 kcal/mol (3513.6305 without restraints) Performing minimization step: 3742. Total energy = 3513.6008 kcal/mol (3512.9128 without restraints) Performing minimization step: 3743. Total energy = 3512.8833 kcal/mol (3512.1957 without restraints) Performing minimization step: 3744. Total energy = 3512.1664 kcal/mol (3511.4792 without restraints) Performing minimization step: 3745. Total energy = 3511.4502 kcal/mol (3510.7634 without restraints) Performing minimization step: 3746. Total energy = 3510.7346 kcal/mol (3510.0482 without restraints) Performing minimization step: 3747. Total energy = 3510.0201 kcal/mol (3509.3340 without restraints) Performing minimization step: 3748. Total energy = 3509.3057 kcal/mol (3508.6201 without restraints) Performing minimization step: 3749. Total energy = 3508.5923 kcal/mol (3507.9072 without restraints) Performing minimization step: 3750. Total energy = 3507.8794 kcal/mol (3507.1945 without restraints) Performing minimization step: 3751. Total energy = 3507.1668 kcal/mol (3506.4824 without restraints) Performing minimization step: 3752. Total energy = 3506.4552 kcal/mol (3505.7712 without restraints) Performing minimization step: 3753. Total energy = 3505.7446 kcal/mol (3505.0609 without restraints) Performing minimization step: 3754. Total energy = 3505.0341 kcal/mol (3504.3508 without restraints) Performing minimization step: 3755. Total energy = 3504.3242 kcal/mol (3503.6413 without restraints) Performing minimization step: 3756. Total energy = 3503.6150 kcal/mol (3502.9326 without restraints) Performing minimization step: 3757. Total energy = 3502.9063 kcal/mol (3502.2242 without restraints) Performing minimization step: 3758. Total energy = 3502.1983 kcal/mol (3501.5166 without restraints) Performing minimization step: 3759. Total energy = 3501.4911 kcal/mol (3500.8097 without restraints) Performing minimization step: 3760. Total energy = 3500.7844 kcal/mol (3500.1034 without restraints) Performing minimization step: 3761. Total energy = 3500.0785 kcal/mol (3499.3980 without restraints) Performing minimization step: 3762. Total energy = 3499.3732 kcal/mol (3498.6930 without restraints) Performing minimization step: 3763. Total energy = 3498.6682 kcal/mol (3497.9884 without restraints) Performing minimization step: 3764. Total energy = 3497.9641 kcal/mol (3497.2847 without restraints) Performing minimization step: 3765. Total energy = 3497.2601 kcal/mol (3496.5812 without restraints) Performing minimization step: 3766. Total energy = 3496.5573 kcal/mol (3495.8787 without restraints) Performing minimization step: 3767. Total energy = 3495.8550 kcal/mol (3495.1768 without restraints) Performing minimization step: 3768. Total energy = 3495.1532 kcal/mol (3494.4754 without restraints) Performing minimization step: 3769. Total energy = 3494.4524 kcal/mol (3493.7750 without restraints) Performing minimization step: 3770. Total energy = 3493.7526 kcal/mol (3493.0757 without restraints) Performing minimization step: 3771. Total energy = 3493.0530 kcal/mol (3492.3764 without restraints) Performing minimization step: 3772. Total energy = 3492.3543 kcal/mol (3491.6781 without restraints) Performing minimization step: 3773. Total energy = 3491.6562 kcal/mol (3490.9804 without restraints) Performing minimization step: 3774. Total energy = 3490.9584 kcal/mol (3490.2830 without restraints) Performing minimization step: 3775. Total energy = 3490.2612 kcal/mol (3489.5862 without restraints) Performing minimization step: 3776. Total energy = 3489.5647 kcal/mol (3488.8900 without restraints) Performing minimization step: 3777. Total energy = 3488.8687 kcal/mol (3488.1944 without restraints) Performing minimization step: 3778. Total energy = 3488.1734 kcal/mol (3487.4995 without restraints) Performing minimization step: 3779. Total energy = 3487.4787 kcal/mol (3486.8052 without restraints) Performing minimization step: 3780. Total energy = 3486.7847 kcal/mol (3486.1116 without restraints) Performing minimization step: 3781. Total energy = 3486.0914 kcal/mol (3485.4186 without restraints) Performing minimization step: 3782. Total energy = 3485.3986 kcal/mol (3484.7262 without restraints) Performing minimization step: 3783. Total energy = 3484.7063 kcal/mol (3484.0343 without restraints) Performing minimization step: 3784. Total energy = 3484.0148 kcal/mol (3483.3434 without restraints) Performing minimization step: 3785. Total energy = 3483.3238 kcal/mol (3482.6526 without restraints) Performing minimization step: 3786. Total energy = 3482.6335 kcal/mol (3481.9627 without restraints) Performing minimization step: 3787. Total energy = 3481.9438 kcal/mol (3481.2734 without restraints) Performing minimization step: 3788. Total energy = 3481.2546 kcal/mol (3480.5845 without restraints) Performing minimization step: 3789. Total energy = 3480.5661 kcal/mol (3479.8964 without restraints) Performing minimization step: 3790. Total energy = 3479.8782 kcal/mol (3479.2090 without restraints) Performing minimization step: 3791. Total energy = 3479.1910 kcal/mol (3478.5221 without restraints) Performing minimization step: 3792. Total energy = 3478.5044 kcal/mol (3477.8359 without restraints) Performing minimization step: 3793. Total energy = 3477.8183 kcal/mol (3477.1502 without restraints) Performing minimization step: 3794. Total energy = 3477.1331 kcal/mol (3476.4654 without restraints) Performing minimization step: 3795. Total energy = 3476.4484 kcal/mol (3475.7810 without restraints) Performing minimization step: 3796. Total energy = 3475.7640 kcal/mol (3475.0971 without restraints) Performing minimization step: 3797. Total energy = 3475.0808 kcal/mol (3474.4143 without restraints) Performing minimization step: 3798. Total energy = 3474.3980 kcal/mol (3473.7319 without restraints) Performing minimization step: 3799. Total energy = 3473.7160 kcal/mol (3473.0502 without restraints) Performing minimization step: 3800. Total energy = 3473.0342 kcal/mol (3472.3687 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 3472.3531 kcal/mol (3471.6881 without restraints) Performing minimization step: 3802. Total energy = 3471.6727 kcal/mol (3471.0080 without restraints) Performing minimization step: 3803. Total energy = 3470.9928 kcal/mol (3470.3286 without restraints) Performing minimization step: 3804. Total energy = 3470.3136 kcal/mol (3469.6498 without restraints) Performing minimization step: 3805. Total energy = 3469.6353 kcal/mol (3468.9718 without restraints) Performing minimization step: 3806. Total energy = 3468.9574 kcal/mol (3468.2944 without restraints) Performing minimization step: 3807. Total energy = 3468.2800 kcal/mol (3467.6173 without restraints) Performing minimization step: 3808. Total energy = 3467.6033 kcal/mol (3466.9411 without restraints) Performing minimization step: 3809. Total energy = 3466.9270 kcal/mol (3466.2651 without restraints) Performing minimization step: 3810. Total energy = 3466.2515 kcal/mol (3465.5899 without restraints) Performing minimization step: 3811. Total energy = 3465.5765 kcal/mol (3464.9153 without restraints) Performing minimization step: 3812. Total energy = 3464.9022 kcal/mol (3464.2415 without restraints) Performing minimization step: 3813. Total energy = 3464.2283 kcal/mol (3463.5679 without restraints) Performing minimization step: 3814. Total energy = 3463.5550 kcal/mol (3462.8951 without restraints) Performing minimization step: 3815. Total energy = 3462.8822 kcal/mol (3462.2226 without restraints) Performing minimization step: 3816. Total energy = 3462.2103 kcal/mol (3461.5510 without restraints) Performing minimization step: 3817. Total energy = 3461.5389 kcal/mol (3460.8800 without restraints) Performing minimization step: 3818. Total energy = 3460.8681 kcal/mol (3460.2096 without restraints) Performing minimization step: 3819. Total energy = 3460.1979 kcal/mol (3459.5398 without restraints) Performing minimization step: 3820. Total energy = 3459.5284 kcal/mol (3458.8706 without restraints) Performing minimization step: 3821. Total energy = 3458.8594 kcal/mol (3458.2020 without restraints) Performing minimization step: 3822. Total energy = 3458.1910 kcal/mol (3457.5340 without restraints) Performing minimization step: 3823. Total energy = 3457.5232 kcal/mol (3456.8666 without restraints) Performing minimization step: 3824. Total energy = 3456.8559 kcal/mol (3456.1997 without restraints) Performing minimization step: 3825. Total energy = 3456.1894 kcal/mol (3455.5335 without restraints) Performing minimization step: 3826. Total energy = 3455.5235 kcal/mol (3454.8681 without restraints) Performing minimization step: 3827. Total energy = 3454.8583 kcal/mol (3454.2032 without restraints) Performing minimization step: 3828. Total energy = 3454.1934 kcal/mol (3453.5387 without restraints) Performing minimization step: 3829. Total energy = 3453.5294 kcal/mol (3452.8751 without restraints) Performing minimization step: 3830. Total energy = 3452.8657 kcal/mol (3452.2118 without restraints) Performing minimization step: 3831. Total energy = 3452.2026 kcal/mol (3451.5491 without restraints) Performing minimization step: 3832. Total energy = 3451.5401 kcal/mol (3450.8869 without restraints) Performing minimization step: 3833. Total energy = 3450.8782 kcal/mol (3450.2254 without restraints) Performing minimization step: 3834. Total energy = 3450.2170 kcal/mol (3449.5647 without restraints) Performing minimization step: 3835. Total energy = 3449.5563 kcal/mol (3448.9043 without restraints) Performing minimization step: 3836. Total energy = 3448.8961 kcal/mol (3448.2445 without restraints) Performing minimization step: 3837. Total energy = 3448.2365 kcal/mol (3447.5853 without restraints) Performing minimization step: 3838. Total energy = 3447.5777 kcal/mol (3446.9268 without restraints) Performing minimization step: 3839. Total energy = 3446.9192 kcal/mol (3446.2687 without restraints) Performing minimization step: 3840. Total energy = 3446.2614 kcal/mol (3445.6111 without restraints) Performing minimization step: 3841. Total energy = 3445.6041 kcal/mol (3444.9543 without restraints) Performing minimization step: 3842. Total energy = 3444.9473 kcal/mol (3444.2980 without restraints) Performing minimization step: 3843. Total energy = 3444.2914 kcal/mol (3443.6426 without restraints) Performing minimization step: 3844. Total energy = 3443.6360 kcal/mol (3442.9874 without restraints) Performing minimization step: 3845. Total energy = 3442.9811 kcal/mol (3442.3329 without restraints) Performing minimization step: 3846. Total energy = 3442.3269 kcal/mol (3441.6790 without restraints) Performing minimization step: 3847. Total energy = 3441.6730 kcal/mol (3441.0255 without restraints) Performing minimization step: 3848. Total energy = 3441.0194 kcal/mol (3440.3723 without restraints) Performing minimization step: 3849. Total energy = 3440.3667 kcal/mol (3439.7199 without restraints) Performing minimization step: 3850. Total energy = 3439.7145 kcal/mol (3439.0681 without restraints) Performing minimization step: 3851. Total energy = 3439.0628 kcal/mol (3438.4168 without restraints) Performing minimization step: 3852. Total energy = 3438.4118 kcal/mol (3437.7662 without restraints) Performing minimization step: 3853. Total energy = 3437.7615 kcal/mol (3437.1163 without restraints) Performing minimization step: 3854. Total energy = 3437.1113 kcal/mol (3436.4664 without restraints) Performing minimization step: 3855. Total energy = 3436.4620 kcal/mol (3435.8174 without restraints) Performing minimization step: 3856. Total energy = 3435.8131 kcal/mol (3435.1690 without restraints) Performing minimization step: 3857. Total energy = 3435.1649 kcal/mol (3434.5212 without restraints) Performing minimization step: 3858. Total energy = 3434.5172 kcal/mol (3433.8738 without restraints) Performing minimization step: 3859. Total energy = 3433.8700 kcal/mol (3433.2270 without restraints) Performing minimization step: 3860. Total energy = 3433.2234 kcal/mol (3432.5807 without restraints) Performing minimization step: 3861. Total energy = 3432.5773 kcal/mol (3431.9350 without restraints) Performing minimization step: 3862. Total energy = 3431.9318 kcal/mol (3431.2899 without restraints) Performing minimization step: 3863. Total energy = 3431.2868 kcal/mol (3430.6453 without restraints) Performing minimization step: 3864. Total energy = 3430.6423 kcal/mol (3430.0012 without restraints) Performing minimization step: 3865. Total energy = 3429.9984 kcal/mol (3429.3577 without restraints) Performing minimization step: 3866. Total energy = 3429.3551 kcal/mol (3428.7147 without restraints) Performing minimization step: 3867. Total energy = 3428.7123 kcal/mol (3428.0723 without restraints) Performing minimization step: 3868. Total energy = 3428.0700 kcal/mol (3427.4304 without restraints) Performing minimization step: 3869. Total energy = 3427.4281 kcal/mol (3426.7888 without restraints) Performing minimization step: 3870. Total energy = 3426.7870 kcal/mol (3426.1481 without restraints) Performing minimization step: 3871. Total energy = 3426.1464 kcal/mol (3425.5078 without restraints) Performing minimization step: 3872. Total energy = 3425.5063 kcal/mol (3424.8681 without restraints) Performing minimization step: 3873. Total energy = 3424.8666 kcal/mol (3424.2287 without restraints) Performing minimization step: 3874. Total energy = 3424.2273 kcal/mol (3423.5899 without restraints) Performing minimization step: 3875. Total energy = 3423.5888 kcal/mol (3422.9517 without restraints) Performing minimization step: 3876. Total energy = 3422.9512 kcal/mol (3422.3145 without restraints) Performing minimization step: 3877. Total energy = 3422.3138 kcal/mol (3421.6775 without restraints) Performing minimization step: 3878. Total energy = 3421.6769 kcal/mol (3421.0409 without restraints) Performing minimization step: 3879. Total energy = 3421.0403 kcal/mol (3420.4047 without restraints) Performing minimization step: 3880. Total energy = 3420.4045 kcal/mol (3419.7692 without restraints) Performing minimization step: 3881. Total energy = 3419.7691 kcal/mol (3419.1342 without restraints) Performing minimization step: 3882. Total energy = 3419.1343 kcal/mol (3418.4998 without restraints) Performing minimization step: 3883. Total energy = 3418.5001 kcal/mol (3417.8660 without restraints) Performing minimization step: 3884. Total energy = 3417.8664 kcal/mol (3417.2326 without restraints) Performing minimization step: 3885. Total energy = 3417.2331 kcal/mol (3416.5997 without restraints) Performing minimization step: 3886. Total energy = 3416.6004 kcal/mol (3415.9674 without restraints) Performing minimization step: 3887. Total energy = 3415.9683 kcal/mol (3415.3356 without restraints) Performing minimization step: 3888. Total energy = 3415.3366 kcal/mol (3414.7043 without restraints) Performing minimization step: 3889. Total energy = 3414.7055 kcal/mol (3414.0735 without restraints) Performing minimization step: 3890. Total energy = 3414.0749 kcal/mol (3413.4433 without restraints) Performing minimization step: 3891. Total energy = 3413.4445 kcal/mol (3412.8133 without restraints) Performing minimization step: 3892. Total energy = 3412.8145 kcal/mol (3412.1837 without restraints) Performing minimization step: 3893. Total energy = 3412.1855 kcal/mol (3411.5550 without restraints) Performing minimization step: 3894. Total energy = 3411.5569 kcal/mol (3410.9267 without restraints) Performing minimization step: 3895. Total energy = 3410.9288 kcal/mol (3410.2991 without restraints) Performing minimization step: 3896. Total energy = 3410.3013 kcal/mol (3409.6718 without restraints) Performing minimization step: 3897. Total energy = 3409.6744 kcal/mol (3409.0453 without restraints) Performing minimization step: 3898. Total energy = 3409.0480 kcal/mol (3408.4193 without restraints) Performing minimization step: 3899. Total energy = 3408.4221 kcal/mol (3407.7938 without restraints) Performing minimization step: 3900. Total energy = 3407.7965 kcal/mol (3407.1686 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 3407.1717 kcal/mol (3406.5440 without restraints) Performing minimization step: 3902. Total energy = 3406.5471 kcal/mol (3405.9198 without restraints) Performing minimization step: 3903. Total energy = 3405.9230 kcal/mol (3405.2961 without restraints) Performing minimization step: 3904. Total energy = 3405.2994 kcal/mol (3404.6729 without restraints) Performing minimization step: 3905. Total energy = 3404.6764 kcal/mol (3404.0502 without restraints) Performing minimization step: 3906. Total energy = 3404.0538 kcal/mol (3403.4280 without restraints) Performing minimization step: 3907. Total energy = 3403.4313 kcal/mol (3402.8059 without restraints) Performing minimization step: 3908. Total energy = 3402.8097 kcal/mol (3402.1846 without restraints) Performing minimization step: 3909. Total energy = 3402.1884 kcal/mol (3401.5637 without restraints) Performing minimization step: 3910. Total energy = 3401.5678 kcal/mol (3400.9434 without restraints) Performing minimization step: 3911. Total energy = 3400.9477 kcal/mol (3400.3237 without restraints) Performing minimization step: 3912. Total energy = 3400.3280 kcal/mol (3399.7043 without restraints) Performing minimization step: 3913. Total energy = 3399.7088 kcal/mol (3399.0855 without restraints) Performing minimization step: 3914. Total energy = 3399.0902 kcal/mol (3398.4672 without restraints) Performing minimization step: 3915. Total energy = 3398.4720 kcal/mol (3397.8494 without restraints) Performing minimization step: 3916. Total energy = 3397.8541 kcal/mol (3397.2319 without restraints) Performing minimization step: 3917. Total energy = 3397.2369 kcal/mol (3396.6150 without restraints) Performing minimization step: 3918. Total energy = 3396.6202 kcal/mol (3395.9987 without restraints) Performing minimization step: 3919. Total energy = 3396.0040 kcal/mol (3395.3829 without restraints) Performing minimization step: 3920. Total energy = 3395.3882 kcal/mol (3394.7674 without restraints) Performing minimization step: 3921. Total energy = 3394.7730 kcal/mol (3394.1525 without restraints) Performing minimization step: 3922. Total energy = 3394.1581 kcal/mol (3393.5380 without restraints) Performing minimization step: 3923. Total energy = 3393.5438 kcal/mol (3392.9240 without restraints) Performing minimization step: 3924. Total energy = 3392.9301 kcal/mol (3392.3107 without restraints) Performing minimization step: 3925. Total energy = 3392.3169 kcal/mol (3391.6979 without restraints) Performing minimization step: 3926. Total energy = 3391.7040 kcal/mol (3391.0853 without restraints) Performing minimization step: 3927. Total energy = 3391.0915 kcal/mol (3390.4732 without restraints) Performing minimization step: 3928. Total energy = 3390.4795 kcal/mol (3389.8615 without restraints) Performing minimization step: 3929. Total energy = 3389.8680 kcal/mol (3389.2503 without restraints) Performing minimization step: 3930. Total energy = 3389.2569 kcal/mol (3388.6396 without restraints) Performing minimization step: 3931. Total energy = 3388.6463 kcal/mol (3388.0294 without restraints) Performing minimization step: 3932. Total energy = 3388.0359 kcal/mol (3387.4193 without restraints) Performing minimization step: 3933. Total energy = 3387.4262 kcal/mol (3386.8099 without restraints) Performing minimization step: 3934. Total energy = 3386.8169 kcal/mol (3386.2010 without restraints) Performing minimization step: 3935. Total energy = 3386.2081 kcal/mol (3385.5926 without restraints) Performing minimization step: 3936. Total energy = 3385.5999 kcal/mol (3384.9848 without restraints) Performing minimization step: 3937. Total energy = 3384.9921 kcal/mol (3384.3773 without restraints) Performing minimization step: 3938. Total energy = 3384.3849 kcal/mol (3383.7705 without restraints) Performing minimization step: 3939. Total energy = 3383.7781 kcal/mol (3383.1640 without restraints) Performing minimization step: 3940. Total energy = 3383.1716 kcal/mol (3382.5579 without restraints) Performing minimization step: 3941. Total energy = 3382.5656 kcal/mol (3381.9522 without restraints) Performing minimization step: 3942. Total energy = 3381.9600 kcal/mol (3381.3469 without restraints) Performing minimization step: 3943. Total energy = 3381.3547 kcal/mol (3380.7418 without restraints) Performing minimization step: 3944. Total energy = 3380.7501 kcal/mol (3380.1377 without restraints) Performing minimization step: 3945. Total energy = 3380.1460 kcal/mol (3379.5339 without restraints) Performing minimization step: 3946. Total energy = 3379.5421 kcal/mol (3378.9304 without restraints) Performing minimization step: 3947. Total energy = 3378.9387 kcal/mol (3378.3274 without restraints) Performing minimization step: 3948. Total energy = 3378.3357 kcal/mol (3377.7246 without restraints) Performing minimization step: 3949. Total energy = 3377.7330 kcal/mol (3377.1224 without restraints) Performing minimization step: 3950. Total energy = 3377.1312 kcal/mol (3376.5208 without restraints) Performing minimization step: 3951. Total energy = 3376.5295 kcal/mol (3375.9195 without restraints) Performing minimization step: 3952. Total energy = 3375.9283 kcal/mol (3375.3187 without restraints) Performing minimization step: 3953. Total energy = 3375.3276 kcal/mol (3374.7183 without restraints) Performing minimization step: 3954. Total energy = 3374.7272 kcal/mol (3374.1183 without restraints) Performing minimization step: 3955. Total energy = 3374.1274 kcal/mol (3373.5188 without restraints) Performing minimization step: 3956. Total energy = 3373.5280 kcal/mol (3372.9197 without restraints) Performing minimization step: 3957. Total energy = 3372.9288 kcal/mol (3372.3208 without restraints) Performing minimization step: 3958. Total energy = 3372.3301 kcal/mol (3371.7226 without restraints) Performing minimization step: 3959. Total energy = 3371.7319 kcal/mol (3371.1247 without restraints) Performing minimization step: 3960. Total energy = 3371.1342 kcal/mol (3370.5273 without restraints) Performing minimization step: 3961. Total energy = 3370.5370 kcal/mol (3369.9305 without restraints) Performing minimization step: 3962. Total energy = 3369.9402 kcal/mol (3369.3340 without restraints) Performing minimization step: 3963. Total energy = 3369.3438 kcal/mol (3368.7380 without restraints) Performing minimization step: 3964. Total energy = 3368.7478 kcal/mol (3368.1422 without restraints) Performing minimization step: 3965. Total energy = 3368.1523 kcal/mol (3367.5471 without restraints) Performing minimization step: 3966. Total energy = 3367.5571 kcal/mol (3366.9523 without restraints) Performing minimization step: 3967. Total energy = 3366.9624 kcal/mol (3366.3579 without restraints) Performing minimization step: 3968. Total energy = 3366.3682 kcal/mol (3365.7641 without restraints) Performing minimization step: 3969. Total energy = 3365.7741 kcal/mol (3365.1703 without restraints) Performing minimization step: 3970. Total energy = 3365.1806 kcal/mol (3364.5771 without restraints) Performing minimization step: 3971. Total energy = 3364.5875 kcal/mol (3363.9843 without restraints) Performing minimization step: 3972. Total energy = 3363.9948 kcal/mol (3363.3920 without restraints) Performing minimization step: 3973. Total energy = 3363.4025 kcal/mol (3362.8000 without restraints) Performing minimization step: 3974. Total energy = 3362.8107 kcal/mol (3362.2087 without restraints) Performing minimization step: 3975. Total energy = 3362.2193 kcal/mol (3361.6176 without restraints) Performing minimization step: 3976. Total energy = 3361.6281 kcal/mol (3361.0266 without restraints) Performing minimization step: 3977. Total energy = 3361.0374 kcal/mol (3360.4363 without restraints) Performing minimization step: 3978. Total energy = 3360.4469 kcal/mol (3359.8461 without restraints) Performing minimization step: 3979. Total energy = 3359.8571 kcal/mol (3359.2566 without restraints) Performing minimization step: 3980. Total energy = 3359.2676 kcal/mol (3358.6675 without restraints) Performing minimization step: 3981. Total energy = 3358.6786 kcal/mol (3358.0788 without restraints) Performing minimization step: 3982. Total energy = 3358.0899 kcal/mol (3357.4905 without restraints) Performing minimization step: 3983. Total energy = 3357.5019 kcal/mol (3356.9028 without restraints) Performing minimization step: 3984. Total energy = 3356.9141 kcal/mol (3356.3153 without restraints) Performing minimization step: 3985. Total energy = 3356.3266 kcal/mol (3355.7282 without restraints) Performing minimization step: 3986. Total energy = 3355.7393 kcal/mol (3355.1413 without restraints) Performing minimization step: 3987. Total energy = 3355.1524 kcal/mol (3354.5547 without restraints) Performing minimization step: 3988. Total energy = 3354.5662 kcal/mol (3353.9687 without restraints) Performing minimization step: 3989. Total energy = 3353.9801 kcal/mol (3353.3830 without restraints) Performing minimization step: 3990. Total energy = 3353.3948 kcal/mol (3352.7980 without restraints) Performing minimization step: 3991. Total energy = 3352.8097 kcal/mol (3352.2133 without restraints) Performing minimization step: 3992. Total energy = 3352.2252 kcal/mol (3351.6291 without restraints) Performing minimization step: 3993. Total energy = 3351.6409 kcal/mol (3351.0451 without restraints) Performing minimization step: 3994. Total energy = 3351.0570 kcal/mol (3350.4615 without restraints) Performing minimization step: 3995. Total energy = 3350.4734 kcal/mol (3349.8783 without restraints) Performing minimization step: 3996. Total energy = 3349.8901 kcal/mol (3349.2953 without restraints) Performing minimization step: 3997. Total energy = 3349.3073 kcal/mol (3348.7129 without restraints) Performing minimization step: 3998. Total energy = 3348.7247 kcal/mol (3348.1306 without restraints) Performing minimization step: 3999. Total energy = 3348.1428 kcal/mol (3347.5491 without restraints) Performing minimization step: 4000. Total energy = 3347.5613 kcal/mol (3346.9679 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 3346.9799 kcal/mol (3346.3868 without restraints) Performing minimization step: 4002. Total energy = 3346.3990 kcal/mol (3345.8062 without restraints) Performing minimization step: 4003. Total energy = 3345.8186 kcal/mol (3345.2262 without restraints) Performing minimization step: 4004. Total energy = 3345.2386 kcal/mol (3344.6465 without restraints) Performing minimization step: 4005. Total energy = 3344.6589 kcal/mol (3344.0671 without restraints) Performing minimization step: 4006. Total energy = 3344.0799 kcal/mol (3343.4885 without restraints) Performing minimization step: 4007. Total energy = 3343.5010 kcal/mol (3342.9098 without restraints) Performing minimization step: 4008. Total energy = 3342.9224 kcal/mol (3342.3315 without restraints) Performing minimization step: 4009. Total energy = 3342.3441 kcal/mol (3341.7536 without restraints) Performing minimization step: 4010. Total energy = 3341.7664 kcal/mol (3341.1763 without restraints) Performing minimization step: 4011. Total energy = 3341.1889 kcal/mol (3340.5991 without restraints) Performing minimization step: 4012. Total energy = 3340.6118 kcal/mol (3340.0223 without restraints) Performing minimization step: 4013. Total energy = 3340.0350 kcal/mol (3339.4458 without restraints) Performing minimization step: 4014. Total energy = 3339.4585 kcal/mol (3338.8696 without restraints) Performing minimization step: 4015. Total energy = 3338.8824 kcal/mol (3338.2938 without restraints) Performing minimization step: 4016. Total energy = 3338.3065 kcal/mol (3337.7182 without restraints) Performing minimization step: 4017. Total energy = 3337.7314 kcal/mol (3337.1435 without restraints) Performing minimization step: 4018. Total energy = 3337.1564 kcal/mol (3336.5689 without restraints) Performing minimization step: 4019. Total energy = 3336.5818 kcal/mol (3335.9946 without restraints) Performing minimization step: 4020. Total energy = 3336.0076 kcal/mol (3335.4207 without restraints) Performing minimization step: 4021. Total energy = 3335.4338 kcal/mol (3334.8472 without restraints) Performing minimization step: 4022. Total energy = 3334.8603 kcal/mol (3334.2740 without restraints) Performing minimization step: 4023. Total energy = 3334.2871 kcal/mol (3333.7012 without restraints) Performing minimization step: 4024. Total energy = 3333.7143 kcal/mol (3333.1286 without restraints) Performing minimization step: 4025. Total energy = 3333.1418 kcal/mol (3332.5565 without restraints) Performing minimization step: 4026. Total energy = 3332.5697 kcal/mol (3331.9847 without restraints) Performing minimization step: 4027. Total energy = 3331.9980 kcal/mol (3331.4133 without restraints) Performing minimization step: 4028. Total energy = 3331.4268 kcal/mol (3330.8424 without restraints) Performing minimization step: 4029. Total energy = 3330.8558 kcal/mol (3330.2719 without restraints) Performing minimization step: 4030. Total energy = 3330.2853 kcal/mol (3329.7016 without restraints) Performing minimization step: 4031. Total energy = 3329.7149 kcal/mol (3329.1315 without restraints) Performing minimization step: 4032. Total energy = 3329.1453 kcal/mol (3328.5622 without restraints) Performing minimization step: 4033. Total energy = 3328.5756 kcal/mol (3327.9928 without restraints) Performing minimization step: 4034. Total energy = 3328.0063 kcal/mol (3327.4238 without restraints) Performing minimization step: 4035. Total energy = 3327.4371 kcal/mol (3326.8550 without restraints) Performing minimization step: 4036. Total energy = 3326.8682 kcal/mol (3326.2861 without restraints) Performing minimization step: 4037. Total energy = 3326.2996 kcal/mol (3325.7181 without restraints) Performing minimization step: 4038. Total energy = 3325.7316 kcal/mol (3325.1504 without restraints) Performing minimization step: 4039. Total energy = 3325.1640 kcal/mol (3324.5831 without restraints) Performing minimization step: 4040. Total energy = 3324.5967 kcal/mol (3324.0161 without restraints) Performing minimization step: 4041. Total energy = 3324.0297 kcal/mol (3323.4495 without restraints) Performing minimization step: 4042. Total energy = 3323.4633 kcal/mol (3322.8833 without restraints) Performing minimization step: 4043. Total energy = 3322.8970 kcal/mol (3322.3173 without restraints) Performing minimization step: 4044. Total energy = 3322.3314 kcal/mol (3321.7522 without restraints) Performing minimization step: 4045. Total energy = 3321.7656 kcal/mol (3321.1866 without restraints) Performing minimization step: 4046. Total energy = 3321.2003 kcal/mol (3320.6216 without restraints) Performing minimization step: 4047. Total energy = 3320.6353 kcal/mol (3320.0569 without restraints) Performing minimization step: 4048. Total energy = 3320.0706 kcal/mol (3319.4926 without restraints) Performing minimization step: 4049. Total energy = 3319.5063 kcal/mol (3318.9285 without restraints) Performing minimization step: 4050. Total energy = 3318.9423 kcal/mol (3318.3648 without restraints) Performing minimization step: 4051. Total energy = 3318.3786 kcal/mol (3317.8014 without restraints) Performing minimization step: 4052. Total energy = 3317.8152 kcal/mol (3317.2383 without restraints) Performing minimization step: 4053. Total energy = 3317.2521 kcal/mol (3316.6756 without restraints) Performing minimization step: 4054. Total energy = 3316.6895 kcal/mol (3316.1133 without restraints) Performing minimization step: 4055. Total energy = 3316.1273 kcal/mol (3315.5514 without restraints) Performing minimization step: 4056. Total energy = 3315.5656 kcal/mol (3314.9900 without restraints) Performing minimization step: 4057. Total energy = 3315.0037 kcal/mol (3314.4285 without restraints) Performing minimization step: 4058. Total energy = 3314.4424 kcal/mol (3313.8676 without restraints) Performing minimization step: 4059. Total energy = 3313.8816 kcal/mol (3313.3070 without restraints) Performing minimization step: 4060. Total energy = 3313.3207 kcal/mol (3312.7464 without restraints) Performing minimization step: 4061. Total energy = 3312.7602 kcal/mol (3312.1863 without restraints) Performing minimization step: 4062. Total energy = 3312.2002 kcal/mol (3311.6265 without restraints) Performing minimization step: 4063. Total energy = 3311.6405 kcal/mol (3311.0671 without restraints) Performing minimization step: 4064. Total energy = 3311.0807 kcal/mol (3310.5076 without restraints) Performing minimization step: 4065. Total energy = 3310.5215 kcal/mol (3309.9487 without restraints) Performing minimization step: 4066. Total energy = 3309.9627 kcal/mol (3309.3902 without restraints) Performing minimization step: 4067. Total energy = 3309.4038 kcal/mol (3308.8315 without restraints) Performing minimization step: 4068. Total energy = 3308.8455 kcal/mol (3308.2736 without restraints) Performing minimization step: 4069. Total energy = 3308.2871 kcal/mol (3307.7155 without restraints) Performing minimization step: 4070. Total energy = 3307.7292 kcal/mol (3307.1579 without restraints) Performing minimization step: 4071. Total energy = 3307.1716 kcal/mol (3306.6006 without restraints) Performing minimization step: 4072. Total energy = 3306.6143 kcal/mol (3306.0436 without restraints) Performing minimization step: 4073. Total energy = 3306.0573 kcal/mol (3305.4869 without restraints) Performing minimization step: 4074. Total energy = 3305.5007 kcal/mol (3304.9306 without restraints) Performing minimization step: 4075. Total energy = 3304.9443 kcal/mol (3304.3745 without restraints) Performing minimization step: 4076. Total energy = 3304.3881 kcal/mol (3303.8187 without restraints) Performing minimization step: 4077. Total energy = 3303.8323 kcal/mol (3303.2631 without restraints) Performing minimization step: 4078. Total energy = 3303.2769 kcal/mol (3302.7080 without restraints) Performing minimization step: 4079. Total energy = 3302.7216 kcal/mol (3302.1530 without restraints) Performing minimization step: 4080. Total energy = 3302.1666 kcal/mol (3301.5981 without restraints) Performing minimization step: 4081. Total energy = 3301.6116 kcal/mol (3301.0436 without restraints) Performing minimization step: 4082. Total energy = 3301.0574 kcal/mol (3300.4897 without restraints) Performing minimization step: 4083. Total energy = 3300.5034 kcal/mol (3299.9360 without restraints) Performing minimization step: 4084. Total energy = 3299.9496 kcal/mol (3299.3826 without restraints) Performing minimization step: 4085. Total energy = 3299.3960 kcal/mol (3298.8292 without restraints) Performing minimization step: 4086. Total energy = 3298.8426 kcal/mol (3298.2761 without restraints) Performing minimization step: 4087. Total energy = 3298.2896 kcal/mol (3297.7234 without restraints) Performing minimization step: 4088. Total energy = 3297.7370 kcal/mol (3297.1711 without restraints) Performing minimization step: 4089. Total energy = 3297.1844 kcal/mol (3296.6188 without restraints) Performing minimization step: 4090. Total energy = 3296.6320 kcal/mol (3296.0667 without restraints) Performing minimization step: 4091. Total energy = 3296.0802 kcal/mol (3295.5151 without restraints) Performing minimization step: 4092. Total energy = 3295.5285 kcal/mol (3294.9638 without restraints) Performing minimization step: 4093. Total energy = 3294.9770 kcal/mol (3294.4127 without restraints) Performing minimization step: 4094. Total energy = 3294.4257 kcal/mol (3293.8616 without restraints) Performing minimization step: 4095. Total energy = 3293.8748 kcal/mol (3293.3109 without restraints) Performing minimization step: 4096. Total energy = 3293.3239 kcal/mol (3292.7604 without restraints) Performing minimization step: 4097. Total energy = 3292.7734 kcal/mol (3292.2102 without restraints) Performing minimization step: 4098. Total energy = 3292.2231 kcal/mol (3291.6601 without restraints) Performing minimization step: 4099. Total energy = 3291.6729 kcal/mol (3291.1102 without restraints) Performing minimization step: 4100. Total energy = 3291.1229 kcal/mol (3290.5605 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 3290.5732 kcal/mol (3290.0111 without restraints) Performing minimization step: 4102. Total energy = 3290.0238 kcal/mol (3289.4619 without restraints) Performing minimization step: 4103. Total energy = 3289.4746 kcal/mol (3288.9130 without restraints) Performing minimization step: 4104. Total energy = 3288.9258 kcal/mol (3288.3645 without restraints) Performing minimization step: 4105. Total energy = 3288.3768 kcal/mol (3287.8158 without restraints) Performing minimization step: 4106. Total energy = 3287.8283 kcal/mol (3287.2676 without restraints) Performing minimization step: 4107. Total energy = 3287.2800 kcal/mol (3286.7198 without restraints) Performing minimization step: 4108. Total energy = 3286.7320 kcal/mol (3286.1719 without restraints) Performing minimization step: 4109. Total energy = 3286.1840 kcal/mol (3285.6242 without restraints) Performing minimization step: 4110. Total energy = 3285.6362 kcal/mol (3285.0766 without restraints) Performing minimization step: 4111. Total energy = 3285.0886 kcal/mol (3284.5293 without restraints) Performing minimization step: 4112. Total energy = 3284.5412 kcal/mol (3283.9822 without restraints) Performing minimization step: 4113. Total energy = 3283.9940 kcal/mol (3283.4353 without restraints) Performing minimization step: 4114. Total energy = 3283.4470 kcal/mol (3282.8886 without restraints) Performing minimization step: 4115. Total energy = 3282.9003 kcal/mol (3282.3422 without restraints) Performing minimization step: 4116. Total energy = 3282.3537 kcal/mol (3281.7958 without restraints) Performing minimization step: 4117. Total energy = 3281.8073 kcal/mol (3281.2497 without restraints) Performing minimization step: 4118. Total energy = 3281.2610 kcal/mol (3280.7037 without restraints) Performing minimization step: 4119. Total energy = 3280.7149 kcal/mol (3280.1579 without restraints) Performing minimization step: 4120. Total energy = 3280.1689 kcal/mol (3279.6121 without restraints) Performing minimization step: 4121. Total energy = 3279.6232 kcal/mol (3279.0667 without restraints) Performing minimization step: 4122. Total energy = 3279.0776 kcal/mol (3278.5214 without restraints) Performing minimization step: 4123. Total energy = 3278.5318 kcal/mol (3277.9759 without restraints) Performing minimization step: 4124. Total energy = 3277.9867 kcal/mol (3277.4310 without restraints) Performing minimization step: 4125. Total energy = 3277.4416 kcal/mol (3276.8864 without restraints) Performing minimization step: 4126. Total energy = 3276.8967 kcal/mol (3276.3416 without restraints) Performing minimization step: 4127. Total energy = 3276.3518 kcal/mol (3275.7969 without restraints) Performing minimization step: 4128. Total energy = 3275.8070 kcal/mol (3275.2524 without restraints) Performing minimization step: 4129. Total energy = 3275.2623 kcal/mol (3274.7079 without restraints) Performing minimization step: 4130. Total energy = 3274.7179 kcal/mol (3274.1638 without restraints) Performing minimization step: 4131. Total energy = 3274.1736 kcal/mol (3273.6198 without restraints) Performing minimization step: 4132. Total energy = 3273.6292 kcal/mol (3273.0757 without restraints) Performing minimization step: 4133. Total energy = 3273.0850 kcal/mol (3272.5317 without restraints) Performing minimization step: 4134. Total energy = 3272.5407 kcal/mol (3271.9876 without restraints) Performing minimization step: 4135. Total energy = 3271.9967 kcal/mol (3271.4439 without restraints) Performing minimization step: 4136. Total energy = 3271.4526 kcal/mol (3270.9001 without restraints) Performing minimization step: 4137. Total energy = 3270.9085 kcal/mol (3270.3560 without restraints) Performing minimization step: 4138. Total energy = 3270.3644 kcal/mol (3269.8124 without restraints) Performing minimization step: 4139. Total energy = 3269.8205 kcal/mol (3269.2687 without restraints) Performing minimization step: 4140. Total energy = 3269.2767 kcal/mol (3268.7252 without restraints) Performing minimization step: 4141. Total energy = 3268.7329 kcal/mol (3268.1816 without restraints) Performing minimization step: 4142. Total energy = 3268.1891 kcal/mol (3267.6381 without restraints) Performing minimization step: 4143. Total energy = 3267.6455 kcal/mol (3267.0948 without restraints) Performing minimization step: 4144. Total energy = 3267.1018 kcal/mol (3266.5513 without restraints) Performing minimization step: 4145. Total energy = 3266.5580 kcal/mol (3266.0078 without restraints) Performing minimization step: 4146. Total energy = 3266.0143 kcal/mol (3265.4643 without restraints) Performing minimization step: 4147. Total energy = 3265.4704 kcal/mol (3264.9205 without restraints) Performing minimization step: 4148. Total energy = 3264.9265 kcal/mol (3264.3770 without restraints) Performing minimization step: 4149. Total energy = 3264.3826 kcal/mol (3263.8334 without restraints) Performing minimization step: 4150. Total energy = 3263.8387 kcal/mol (3263.2897 without restraints) Performing minimization step: 4151. Total energy = 3263.2948 kcal/mol (3262.7460 without restraints) Performing minimization step: 4152. Total energy = 3262.7507 kcal/mol (3262.2022 without restraints) Performing minimization step: 4153. Total energy = 3262.2066 kcal/mol (3261.6583 without restraints) Performing minimization step: 4154. Total energy = 3261.6626 kcal/mol (3261.1145 without restraints) Performing minimization step: 4155. Total energy = 3261.1183 kcal/mol (3260.5704 without restraints) Performing minimization step: 4156. Total energy = 3260.5738 kcal/mol (3260.0262 without restraints) Performing minimization step: 4157. Total energy = 3260.0292 kcal/mol (3259.4818 without restraints) Performing minimization step: 4158. Total energy = 3259.4846 kcal/mol (3258.9374 without restraints) Performing minimization step: 4159. Total energy = 3258.9397 kcal/mol (3258.3928 without restraints) Performing minimization step: 4160. Total energy = 3258.3945 kcal/mol (3257.8476 without restraints) Performing minimization step: 4161. Total energy = 3257.8490 kcal/mol (3257.3025 without restraints) Performing minimization step: 4162. Total energy = 3257.3034 kcal/mol (3256.7571 without restraints) Performing minimization step: 4163. Total energy = 3256.7575 kcal/mol (3256.2114 without restraints) Performing minimization step: 4164. Total energy = 3256.2112 kcal/mol (3255.6653 without restraints) Performing minimization step: 4165. Total energy = 3255.6649 kcal/mol (3255.1192 without restraints) Performing minimization step: 4166. Total energy = 3255.1183 kcal/mol (3254.5728 without restraints) Performing minimization step: 4167. Total energy = 3254.5714 kcal/mol (3254.0261 without restraints) Performing minimization step: 4168. Total energy = 3254.0242 kcal/mol (3253.4792 without restraints) Performing minimization step: 4169. Total energy = 3253.4767 kcal/mol (3252.9318 without restraints) Performing minimization step: 4170. Total energy = 3252.9287 kcal/mol (3252.3841 without restraints) Performing minimization step: 4171. Total energy = 3252.3805 kcal/mol (3251.8360 without restraints) Performing minimization step: 4172. Total energy = 3251.8318 kcal/mol (3251.2874 without restraints) Performing minimization step: 4173. Total energy = 3251.2826 kcal/mol (3250.7385 without restraints) Performing minimization step: 4174. Total energy = 3250.7330 kcal/mol (3250.1890 without restraints) Performing minimization step: 4175. Total energy = 3250.1829 kcal/mol (3249.6391 without restraints) Performing minimization step: 4176. Total energy = 3249.6320 kcal/mol (3249.0884 without restraints) Performing minimization step: 4177. Total energy = 3249.0808 kcal/mol (3248.5374 without restraints) Performing minimization step: 4178. Total energy = 3248.5291 kcal/mol (3247.9858 without restraints) Performing minimization step: 4179. Total energy = 3247.9767 kcal/mol (3247.4336 without restraints) Performing minimization step: 4180. Total energy = 3247.4237 kcal/mol (3246.8808 without restraints) Performing minimization step: 4181. Total energy = 3246.8702 kcal/mol (3246.3274 without restraints) Performing minimization step: 4182. Total energy = 3246.3158 kcal/mol (3245.7732 without restraints) Performing minimization step: 4183. Total energy = 3245.7608 kcal/mol (3245.2183 without restraints) Performing minimization step: 4184. Total energy = 3245.2050 kcal/mol (3244.6626 without restraints) Performing minimization step: 4185. Total energy = 3244.6484 kcal/mol (3244.1062 without restraints) Performing minimization step: 4186. Total energy = 3244.0912 kcal/mol (3243.5493 without restraints) Performing minimization step: 4187. Total energy = 3243.5331 kcal/mol (3242.9912 without restraints) Performing minimization step: 4188. Total energy = 3242.9740 kcal/mol (3242.4321 without restraints) Performing minimization step: 4189. Total energy = 3242.4139 kcal/mol (3241.8721 without restraints) Performing minimization step: 4190. Total energy = 3241.8528 kcal/mol (3241.3112 without restraints) Performing minimization step: 4191. Total energy = 3241.2907 kcal/mol (3240.7492 without restraints) Performing minimization step: 4192. Total energy = 3240.7277 kcal/mol (3240.1864 without restraints) Performing minimization step: 4193. Total energy = 3240.1635 kcal/mol (3239.6222 without restraints) Performing minimization step: 4194. Total energy = 3239.5981 kcal/mol (3239.0569 without restraints) Performing minimization step: 4195. Total energy = 3239.0314 kcal/mol (3238.4902 without restraints) Performing minimization step: 4196. Total energy = 3238.4636 kcal/mol (3237.9225 without restraints) Performing minimization step: 4197. Total energy = 3237.8945 kcal/mol (3237.3534 without restraints) Performing minimization step: 4198. Total energy = 3237.3239 kcal/mol (3236.7829 without restraints) Performing minimization step: 4199. Total energy = 3236.7521 kcal/mol (3236.2111 without restraints) Performing minimization step: 4200. Total energy = 3236.1788 kcal/mol (3235.6380 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 3235.6042 kcal/mol (3235.0633 without restraints) Performing minimization step: 4202. Total energy = 3235.0279 kcal/mol (3234.4871 without restraints) Performing minimization step: 4203. Total energy = 3234.4502 kcal/mol (3233.9094 without restraints) Performing minimization step: 4204. Total energy = 3233.8707 kcal/mol (3233.3299 without restraints) Performing minimization step: 4205. Total energy = 3233.2896 kcal/mol (3232.7489 without restraints) Performing minimization step: 4206. Total energy = 3232.7068 kcal/mol (3232.1661 without restraints) Performing minimization step: 4207. Total energy = 3232.1222 kcal/mol (3231.5815 without restraints) Performing minimization step: 4208. Total energy = 3231.5359 kcal/mol (3230.9951 without restraints) Performing minimization step: 4209. Total energy = 3230.9476 kcal/mol (3230.4068 without restraints) Performing minimization step: 4210. Total energy = 3230.3574 kcal/mol (3229.8166 without restraints) Performing minimization step: 4211. Total energy = 3229.7652 kcal/mol (3229.2244 without restraints) Performing minimization step: 4212. Total energy = 3229.1710 kcal/mol (3228.6302 without restraints) Performing minimization step: 4213. Total energy = 3228.5747 kcal/mol (3228.0338 without restraints) Performing minimization step: 4214. Total energy = 3227.9762 kcal/mol (3227.4353 without restraints) Performing minimization step: 4215. Total energy = 3227.3756 kcal/mol (3226.8346 without restraints) Performing minimization step: 4216. Total energy = 3226.7727 kcal/mol (3226.2316 without restraints) Performing minimization step: 4217. Total energy = 3226.1678 kcal/mol (3225.6266 without restraints) Performing minimization step: 4218. Total energy = 3225.5603 kcal/mol (3225.0191 without restraints) Performing minimization step: 4219. Total energy = 3224.9504 kcal/mol (3224.4091 without restraints) Performing minimization step: 4220. Total energy = 3224.3382 kcal/mol (3223.7968 without restraints) Performing minimization step: 4221. Total energy = 3223.7237 kcal/mol (3223.1822 without restraints) Performing minimization step: 4222. Total energy = 3223.1065 kcal/mol (3222.5649 without restraints) Performing minimization step: 4223. Total energy = 3222.4867 kcal/mol (3221.9450 without restraints) Performing minimization step: 4224. Total energy = 3221.8644 kcal/mol (3221.3225 without restraints) Performing minimization step: 4225. Total energy = 3221.2395 kcal/mol (3220.6977 without restraints) Performing minimization step: 4226. Total energy = 3220.6121 kcal/mol (3220.0700 without restraints) Performing minimization step: 4227. Total energy = 3219.9819 kcal/mol (3219.4397 without restraints) Performing minimization step: 4228. Total energy = 3219.3490 kcal/mol (3218.8067 without restraints) Performing minimization step: 4229. Total energy = 3218.7132 kcal/mol (3218.1708 without restraints) Performing minimization step: 4230. Total energy = 3218.0751 kcal/mol (3217.5326 without restraints) Performing minimization step: 4231. Total energy = 3217.4339 kcal/mol (3216.8912 without restraints) Performing minimization step: 4232. Total energy = 3216.7903 kcal/mol (3216.2475 without restraints) Performing minimization step: 4233. Total energy = 3216.1437 kcal/mol (3215.6008 without restraints) Performing minimization step: 4234. Total energy = 3215.4944 kcal/mol (3214.9513 without restraints) Performing minimization step: 4235. Total energy = 3214.8423 kcal/mol (3214.2990 without restraints) Performing minimization step: 4236. Total energy = 3214.1874 kcal/mol (3213.6440 without restraints) Performing minimization step: 4237. Total energy = 3213.5298 kcal/mol (3212.9862 without restraints) Performing minimization step: 4238. Total energy = 3212.8694 kcal/mol (3212.3257 without restraints) Performing minimization step: 4239. Total energy = 3212.2062 kcal/mol (3211.6624 without restraints) Performing minimization step: 4240. Total energy = 3211.5404 kcal/mol (3210.9964 without restraints) Performing minimization step: 4241. Total energy = 3210.8718 kcal/mol (3210.3276 without restraints) Performing minimization step: 4242. Total energy = 3210.2006 kcal/mol (3209.6564 without restraints) Performing minimization step: 4243. Total energy = 3209.5270 kcal/mol (3208.9827 without restraints) Performing minimization step: 4244. Total energy = 3208.8507 kcal/mol (3208.3062 without restraints) Performing minimization step: 4245. Total energy = 3208.1713 kcal/mol (3207.6267 without restraints) Performing minimization step: 4246. Total energy = 3207.4896 kcal/mol (3206.9448 without restraints) Performing minimization step: 4247. Total energy = 3206.8053 kcal/mol (3206.2604 without restraints) Performing minimization step: 4248. Total energy = 3206.1186 kcal/mol (3205.5736 without restraints) Performing minimization step: 4249. Total energy = 3205.4294 kcal/mol (3204.8842 without restraints) Performing minimization step: 4250. Total energy = 3204.7378 kcal/mol (3204.1925 without restraints) Performing minimization step: 4251. Total energy = 3204.0437 kcal/mol (3203.4983 without restraints) Performing minimization step: 4252. Total energy = 3203.3473 kcal/mol (3202.8018 without restraints) Performing minimization step: 4253. Total energy = 3202.6486 kcal/mol (3202.1030 without restraints) Performing minimization step: 4254. Total energy = 3201.9477 kcal/mol (3201.4020 without restraints) Performing minimization step: 4255. Total energy = 3201.2447 kcal/mol (3200.6989 without restraints) Performing minimization step: 4256. Total energy = 3200.5395 kcal/mol (3199.9937 without restraints) Performing minimization step: 4257. Total energy = 3199.8323 kcal/mol (3199.2864 without restraints) Performing minimization step: 4258. Total energy = 3199.1231 kcal/mol (3198.5771 without restraints) Performing minimization step: 4259. Total energy = 3198.4119 kcal/mol (3197.8659 without restraints) Performing minimization step: 4260. Total energy = 3197.6989 kcal/mol (3197.1528 without restraints) Performing minimization step: 4261. Total energy = 3196.9840 kcal/mol (3196.4378 without restraints) Performing minimization step: 4262. Total energy = 3196.2674 kcal/mol (3195.7212 without restraints) Performing minimization step: 4263. Total energy = 3195.5490 kcal/mol (3195.0028 without restraints) Performing minimization step: 4264. Total energy = 3194.8291 kcal/mol (3194.2828 without restraints) Performing minimization step: 4265. Total energy = 3194.1075 kcal/mol (3193.5612 without restraints) Performing minimization step: 4266. Total energy = 3193.3845 kcal/mol (3192.8382 without restraints) Performing minimization step: 4267. Total energy = 3192.6600 kcal/mol (3192.1137 without restraints) Performing minimization step: 4268. Total energy = 3191.9341 kcal/mol (3191.3878 without restraints) Performing minimization step: 4269. Total energy = 3191.2070 kcal/mol (3190.6608 without restraints) Performing minimization step: 4270. Total energy = 3190.4786 kcal/mol (3189.9323 without restraints) Performing minimization step: 4271. Total energy = 3189.7489 kcal/mol (3189.2026 without restraints) Performing minimization step: 4272. Total energy = 3189.0181 kcal/mol (3188.4718 without restraints) Performing minimization step: 4273. Total energy = 3188.2862 kcal/mol (3187.7400 without restraints) Performing minimization step: 4274. Total energy = 3187.5533 kcal/mol (3187.0071 without restraints) Performing minimization step: 4275. Total energy = 3186.8194 kcal/mol (3186.2733 without restraints) Performing minimization step: 4276. Total energy = 3186.0846 kcal/mol (3185.5386 without restraints) Performing minimization step: 4277. Total energy = 3185.3491 kcal/mol (3184.8032 without restraints) Performing minimization step: 4278. Total energy = 3184.6128 kcal/mol (3184.0669 without restraints) Performing minimization step: 4279. Total energy = 3183.8757 kcal/mol (3183.3298 without restraints) Performing minimization step: 4280. Total energy = 3183.1379 kcal/mol (3182.5921 without restraints) Performing minimization step: 4281. Total energy = 3182.3995 kcal/mol (3181.8538 without restraints) Performing minimization step: 4282. Total energy = 3181.6605 kcal/mol (3181.1149 without restraints) Performing minimization step: 4283. Total energy = 3180.9210 kcal/mol (3180.3755 without restraints) Performing minimization step: 4284. Total energy = 3180.1811 kcal/mol (3179.6357 without restraints) Performing minimization step: 4285. Total energy = 3179.4407 kcal/mol (3178.8952 without restraints) Performing minimization step: 4286. Total energy = 3178.6998 kcal/mol (3178.1546 without restraints) Performing minimization step: 4287. Total energy = 3177.9589 kcal/mol (3177.4138 without restraints) Performing minimization step: 4288. Total energy = 3177.2176 kcal/mol (3176.6727 without restraints) Performing minimization step: 4289. Total energy = 3176.4764 kcal/mol (3175.9316 without restraints) Performing minimization step: 4290. Total energy = 3175.7348 kcal/mol (3175.1901 without restraints) Performing minimization step: 4291. Total energy = 3174.9930 kcal/mol (3174.4485 without restraints) Performing minimization step: 4292. Total energy = 3174.2513 kcal/mol (3173.7068 without restraints) Performing minimization step: 4293. Total energy = 3173.5095 kcal/mol (3172.9652 without restraints) Performing minimization step: 4294. Total energy = 3172.7677 kcal/mol (3172.2235 without restraints) Performing minimization step: 4295. Total energy = 3172.0259 kcal/mol (3171.4820 without restraints) Performing minimization step: 4296. Total energy = 3171.2843 kcal/mol (3170.7405 without restraints) Performing minimization step: 4297. Total energy = 3170.5428 kcal/mol (3169.9992 without restraints) Performing minimization step: 4298. Total energy = 3169.8015 kcal/mol (3169.2580 without restraints) Performing minimization step: 4299. Total energy = 3169.0604 kcal/mol (3168.5171 without restraints) Performing minimization step: 4300. Total energy = 3168.3198 kcal/mol (3167.7767 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 3167.5793 kcal/mol (3167.0364 without restraints) Performing minimization step: 4302. Total energy = 3166.8391 kcal/mol (3166.2964 without restraints) Performing minimization step: 4303. Total energy = 3166.0992 kcal/mol (3165.5567 without restraints) Performing minimization step: 4304. Total energy = 3165.3598 kcal/mol (3164.8175 without restraints) Performing minimization step: 4305. Total energy = 3164.6208 kcal/mol (3164.0787 without restraints) Performing minimization step: 4306. Total energy = 3163.8822 kcal/mol (3163.3403 without restraints) Performing minimization step: 4307. Total energy = 3163.1445 kcal/mol (3162.6028 without restraints) Performing minimization step: 4308. Total energy = 3162.4070 kcal/mol (3161.8655 without restraints) Performing minimization step: 4309. Total energy = 3161.6697 kcal/mol (3161.1285 without restraints) Performing minimization step: 4310. Total energy = 3160.9333 kcal/mol (3160.3922 without restraints) Performing minimization step: 4311. Total energy = 3160.1974 kcal/mol (3159.6566 without restraints) Performing minimization step: 4312. Total energy = 3159.4622 kcal/mol (3158.9216 without restraints) Performing minimization step: 4313. Total energy = 3158.7276 kcal/mol (3158.1873 without restraints) Performing minimization step: 4314. Total energy = 3157.9937 kcal/mol (3157.4536 without restraints) Performing minimization step: 4315. Total energy = 3157.2605 kcal/mol (3156.7206 without restraints) Performing minimization step: 4316. Total energy = 3156.5280 kcal/mol (3155.9884 without restraints) Performing minimization step: 4317. Total energy = 3155.7963 kcal/mol (3155.2568 without restraints) Performing minimization step: 4318. Total energy = 3155.0651 kcal/mol (3154.5259 without restraints) Performing minimization step: 4319. Total energy = 3154.3348 kcal/mol (3153.7959 without restraints) Performing minimization step: 4320. Total energy = 3153.6054 kcal/mol (3153.0667 without restraints) Performing minimization step: 4321. Total energy = 3152.8768 kcal/mol (3152.3383 without restraints) Performing minimization step: 4322. Total energy = 3152.1492 kcal/mol (3151.6110 without restraints) Performing minimization step: 4323. Total energy = 3151.4225 kcal/mol (3150.8845 without restraints) Performing minimization step: 4324. Total energy = 3150.6964 kcal/mol (3150.1587 without restraints) Performing minimization step: 4325. Total energy = 3149.9711 kcal/mol (3149.4337 without restraints) Performing minimization step: 4326. Total energy = 3149.2468 kcal/mol (3148.7096 without restraints) Performing minimization step: 4327. Total energy = 3148.5233 kcal/mol (3147.9864 without restraints) Performing minimization step: 4328. Total energy = 3147.8007 kcal/mol (3147.2640 without restraints) Performing minimization step: 4329. Total energy = 3147.0789 kcal/mol (3146.5424 without restraints) Performing minimization step: 4330. Total energy = 3146.3581 kcal/mol (3145.8219 without restraints) Performing minimization step: 4331. Total energy = 3145.6382 kcal/mol (3145.1023 without restraints) Performing minimization step: 4332. Total energy = 3144.9194 kcal/mol (3144.3837 without restraints) Performing minimization step: 4333. Total energy = 3144.2014 kcal/mol (3143.6660 without restraints) Performing minimization step: 4334. Total energy = 3143.4843 kcal/mol (3142.9492 without restraints) Performing minimization step: 4335. Total energy = 3142.7683 kcal/mol (3142.2334 without restraints) Performing minimization step: 4336. Total energy = 3142.0532 kcal/mol (3141.5186 without restraints) Performing minimization step: 4337. Total energy = 3141.3390 kcal/mol (3140.8046 without restraints) Performing minimization step: 4338. Total energy = 3140.6258 kcal/mol (3140.0917 without restraints) Performing minimization step: 4339. Total energy = 3139.9136 kcal/mol (3139.3798 without restraints) Performing minimization step: 4340. Total energy = 3139.2023 kcal/mol (3138.6687 without restraints) Performing minimization step: 4341. Total energy = 3138.4919 kcal/mol (3137.9586 without restraints) Performing minimization step: 4342. Total energy = 3137.7825 kcal/mol (3137.2495 without restraints) Performing minimization step: 4343. Total energy = 3137.0740 kcal/mol (3136.5413 without restraints) Performing minimization step: 4344. Total energy = 3136.3664 kcal/mol (3135.8338 without restraints) Performing minimization step: 4345. Total energy = 3135.6597 kcal/mol (3135.1275 without restraints) Performing minimization step: 4346. Total energy = 3134.9543 kcal/mol (3134.4223 without restraints) Performing minimization step: 4347. Total energy = 3134.2496 kcal/mol (3133.7179 without restraints) Performing minimization step: 4348. Total energy = 3133.5458 kcal/mol (3133.0143 without restraints) Performing minimization step: 4349. Total energy = 3132.8429 kcal/mol (3132.3117 without restraints) Performing minimization step: 4350. Total energy = 3132.1412 kcal/mol (3131.6102 without restraints) Performing minimization step: 4351. Total energy = 3131.4401 kcal/mol (3130.9094 without restraints) Performing minimization step: 4352. Total energy = 3130.7399 kcal/mol (3130.2095 without restraints) Performing minimization step: 4353. Total energy = 3130.0407 kcal/mol (3129.5105 without restraints) Performing minimization step: 4354. Total energy = 3129.3423 kcal/mol (3128.8124 without restraints) Performing minimization step: 4355. Total energy = 3128.6451 kcal/mol (3128.1154 without restraints) Performing minimization step: 4356. Total energy = 3127.9484 kcal/mol (3127.4190 without restraints) Performing minimization step: 4357. Total energy = 3127.2527 kcal/mol (3126.7235 without restraints) Performing minimization step: 4358. Total energy = 3126.5576 kcal/mol (3126.0287 without restraints) Performing minimization step: 4359. Total energy = 3125.8635 kcal/mol (3125.3348 without restraints) Performing minimization step: 4360. Total energy = 3125.1701 kcal/mol (3124.6417 without restraints) Performing minimization step: 4361. Total energy = 3124.4776 kcal/mol (3123.9494 without restraints) Performing minimization step: 4362. Total energy = 3123.7858 kcal/mol (3123.2579 without restraints) Performing minimization step: 4363. Total energy = 3123.0948 kcal/mol (3122.5671 without restraints) Performing minimization step: 4364. Total energy = 3122.4046 kcal/mol (3121.8771 without restraints) Performing minimization step: 4365. Total energy = 3121.7151 kcal/mol (3121.1878 without restraints) Performing minimization step: 4366. Total energy = 3121.0260 kcal/mol (3120.4990 without restraints) Performing minimization step: 4367. Total energy = 3120.3379 kcal/mol (3119.8111 without restraints) Performing minimization step: 4368. Total energy = 3119.6503 kcal/mol (3119.1238 without restraints) Performing minimization step: 4369. Total energy = 3118.9636 kcal/mol (3118.4373 without restraints) Performing minimization step: 4370. Total energy = 3118.2777 kcal/mol (3117.7517 without restraints) Performing minimization step: 4371. Total energy = 3117.5924 kcal/mol (3117.0665 without restraints) Performing minimization step: 4372. Total energy = 3116.9075 kcal/mol (3116.3819 without restraints) Performing minimization step: 4373. Total energy = 3116.2233 kcal/mol (3115.6979 without restraints) Performing minimization step: 4374. Total energy = 3115.5398 kcal/mol (3115.0145 without restraints) Performing minimization step: 4375. Total energy = 3114.8567 kcal/mol (3114.3317 without restraints) Performing minimization step: 4376. Total energy = 3114.1745 kcal/mol (3113.6497 without restraints) Performing minimization step: 4377. Total energy = 3113.4926 kcal/mol (3112.9680 without restraints) Performing minimization step: 4378. Total energy = 3112.8114 kcal/mol (3112.2870 without restraints) Performing minimization step: 4379. Total energy = 3112.1304 kcal/mol (3111.6063 without restraints) Performing minimization step: 4380. Total energy = 3111.4501 kcal/mol (3110.9263 without restraints) Performing minimization step: 4381. Total energy = 3110.7702 kcal/mol (3110.2465 without restraints) Performing minimization step: 4382. Total energy = 3110.0907 kcal/mol (3109.5672 without restraints) Performing minimization step: 4383. Total energy = 3109.4116 kcal/mol (3108.8882 without restraints) Performing minimization step: 4384. Total energy = 3108.7329 kcal/mol (3108.2097 without restraints) Performing minimization step: 4385. Total energy = 3108.0546 kcal/mol (3107.5316 without restraints) Performing minimization step: 4386. Total energy = 3107.3766 kcal/mol (3106.8539 without restraints) Performing minimization step: 4387. Total energy = 3106.6990 kcal/mol (3106.1764 without restraints) Performing minimization step: 4388. Total energy = 3106.0217 kcal/mol (3105.4993 without restraints) Performing minimization step: 4389. Total energy = 3105.3447 kcal/mol (3104.8225 without restraints) Performing minimization step: 4390. Total energy = 3104.6678 kcal/mol (3104.1458 without restraints) Performing minimization step: 4391. Total energy = 3103.9914 kcal/mol (3103.4696 without restraints) Performing minimization step: 4392. Total energy = 3103.3153 kcal/mol (3102.7936 without restraints) Performing minimization step: 4393. Total energy = 3102.6394 kcal/mol (3102.1179 without restraints) Performing minimization step: 4394. Total energy = 3101.9637 kcal/mol (3101.4424 without restraints) Performing minimization step: 4395. Total energy = 3101.2881 kcal/mol (3100.7670 without restraints) Performing minimization step: 4396. Total energy = 3100.6128 kcal/mol (3100.0918 without restraints) Performing minimization step: 4397. Total energy = 3099.9375 kcal/mol (3099.4167 without restraints) Performing minimization step: 4398. Total energy = 3099.2625 kcal/mol (3098.7418 without restraints) Performing minimization step: 4399. Total energy = 3098.5875 kcal/mol (3098.0670 without restraints) Performing minimization step: 4400. Total energy = 3097.9126 kcal/mol (3097.3923 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 3097.2381 kcal/mol (3096.7179 without restraints) Performing minimization step: 4402. Total energy = 3096.5634 kcal/mol (3096.0434 without restraints) Performing minimization step: 4403. Total energy = 3095.8887 kcal/mol (3095.3688 without restraints) Performing minimization step: 4404. Total energy = 3095.2138 kcal/mol (3094.6941 without restraints) Performing minimization step: 4405. Total energy = 3094.5391 kcal/mol (3094.0196 without restraints) Performing minimization step: 4406. Total energy = 3093.8641 kcal/mol (3093.3447 without restraints) Performing minimization step: 4407. Total energy = 3093.1894 kcal/mol (3092.6701 without restraints) Performing minimization step: 4408. Total energy = 3092.5147 kcal/mol (3091.9955 without restraints) Performing minimization step: 4409. Total energy = 3091.8398 kcal/mol (3091.3208 without restraints) Performing minimization step: 4410. Total energy = 3091.1650 kcal/mol (3090.6461 without restraints) Performing minimization step: 4411. Total energy = 3090.4905 kcal/mol (3089.9717 without restraints) Performing minimization step: 4412. Total energy = 3089.8154 kcal/mol (3089.2968 without restraints) Performing minimization step: 4413. Total energy = 3089.1402 kcal/mol (3088.6217 without restraints) Performing minimization step: 4414. Total energy = 3088.4651 kcal/mol (3087.9468 without restraints) Performing minimization step: 4415. Total energy = 3087.7892 kcal/mol (3087.2710 without restraints) Performing minimization step: 4416. Total energy = 3087.1136 kcal/mol (3086.5955 without restraints) Performing minimization step: 4417. Total energy = 3086.4378 kcal/mol (3085.9198 without restraints) Performing minimization step: 4418. Total energy = 3085.7616 kcal/mol (3085.2437 without restraints) Performing minimization step: 4419. Total energy = 3085.0853 kcal/mol (3084.5676 without restraints) Performing minimization step: 4420. Total energy = 3084.4088 kcal/mol (3083.8912 without restraints) Performing minimization step: 4421. Total energy = 3083.7321 kcal/mol (3083.2146 without restraints) Performing minimization step: 4422. Total energy = 3083.0553 kcal/mol (3082.5381 without restraints) Performing minimization step: 4423. Total energy = 3082.3787 kcal/mol (3081.8614 without restraints) Performing minimization step: 4424. Total energy = 3081.7012 kcal/mol (3081.1840 without restraints) Performing minimization step: 4425. Total energy = 3081.0234 kcal/mol (3080.5064 without restraints) Performing minimization step: 4426. Total energy = 3080.3456 kcal/mol (3079.8286 without restraints) Performing minimization step: 4427. Total energy = 3079.6675 kcal/mol (3079.1506 without restraints) Performing minimization step: 4428. Total energy = 3078.9888 kcal/mol (3078.4720 without restraints) Performing minimization step: 4429. Total energy = 3078.3098 kcal/mol (3077.7932 without restraints) Performing minimization step: 4430. Total energy = 3077.6304 kcal/mol (3077.1139 without restraints) Performing minimization step: 4431. Total energy = 3076.9510 kcal/mol (3076.4346 without restraints) Performing minimization step: 4432. Total energy = 3076.2710 kcal/mol (3075.7547 without restraints) Performing minimization step: 4433. Total energy = 3075.5907 kcal/mol (3075.0745 without restraints) Performing minimization step: 4434. Total energy = 3074.9098 kcal/mol (3074.3937 without restraints) Performing minimization step: 4435. Total energy = 3074.2288 kcal/mol (3073.7128 without restraints) Performing minimization step: 4436. Total energy = 3073.5474 kcal/mol (3073.0314 without restraints) Performing minimization step: 4437. Total energy = 3072.8657 kcal/mol (3072.3500 without restraints) Performing minimization step: 4438. Total energy = 3072.1836 kcal/mol (3071.6679 without restraints) Performing minimization step: 4439. Total energy = 3071.5011 kcal/mol (3070.9855 without restraints) Performing minimization step: 4440. Total energy = 3070.8182 kcal/mol (3070.3027 without restraints) Performing minimization step: 4441. Total energy = 3070.1349 kcal/mol (3069.6195 without restraints) Performing minimization step: 4442. Total energy = 3069.4513 kcal/mol (3068.9359 without restraints) Performing minimization step: 4443. Total energy = 3068.7672 kcal/mol (3068.2520 without restraints) Performing minimization step: 4444. Total energy = 3068.0828 kcal/mol (3067.5676 without restraints) Performing minimization step: 4445. Total energy = 3067.3981 kcal/mol (3066.8831 without restraints) Performing minimization step: 4446. Total energy = 3066.7130 kcal/mol (3066.1980 without restraints) Performing minimization step: 4447. Total energy = 3066.0276 kcal/mol (3065.5129 without restraints) Performing minimization step: 4448. Total energy = 3065.3418 kcal/mol (3064.8271 without restraints) Performing minimization step: 4449. Total energy = 3064.6555 kcal/mol (3064.1408 without restraints) Performing minimization step: 4450. Total energy = 3063.9688 kcal/mol (3063.4542 without restraints) Performing minimization step: 4451. Total energy = 3063.2818 kcal/mol (3062.7673 without restraints) Performing minimization step: 4452. Total energy = 3062.5944 kcal/mol (3062.0800 without restraints) Performing minimization step: 4453. Total energy = 3061.9066 kcal/mol (3061.3923 without restraints) Performing minimization step: 4454. Total energy = 3061.2185 kcal/mol (3060.7043 without restraints) Performing minimization step: 4455. Total energy = 3060.5300 kcal/mol (3060.0159 without restraints) Performing minimization step: 4456. Total energy = 3059.8411 kcal/mol (3059.3270 without restraints) Performing minimization step: 4457. Total energy = 3059.1517 kcal/mol (3058.6377 without restraints) Performing minimization step: 4458. Total energy = 3058.4622 kcal/mol (3057.9484 without restraints) Performing minimization step: 4459. Total energy = 3057.7725 kcal/mol (3057.2589 without restraints) Performing minimization step: 4460. Total energy = 3057.0825 kcal/mol (3056.5689 without restraints) Performing minimization step: 4461. Total energy = 3056.3922 kcal/mol (3055.8787 without restraints) Performing minimization step: 4462. Total energy = 3055.7016 kcal/mol (3055.1882 without restraints) Performing minimization step: 4463. Total energy = 3055.0107 kcal/mol (3054.4973 without restraints) Performing minimization step: 4464. Total energy = 3054.3195 kcal/mol (3053.8063 without restraints) Performing minimization step: 4465. Total energy = 3053.6281 kcal/mol (3053.1150 without restraints) Performing minimization step: 4466. Total energy = 3052.9364 kcal/mol (3052.4235 without restraints) Performing minimization step: 4467. Total energy = 3052.2448 kcal/mol (3051.7320 without restraints) Performing minimization step: 4468. Total energy = 3051.5528 kcal/mol (3051.0400 without restraints) Performing minimization step: 4469. Total energy = 3050.8607 kcal/mol (3050.3481 without restraints) Performing minimization step: 4470. Total energy = 3050.1683 kcal/mol (3049.6558 without restraints) Performing minimization step: 4471. Total energy = 3049.4757 kcal/mol (3048.9633 without restraints) Performing minimization step: 4472. Total energy = 3048.7829 kcal/mol (3048.2705 without restraints) Performing minimization step: 4473. Total energy = 3048.0899 kcal/mol (3047.5777 without restraints) Performing minimization step: 4474. Total energy = 3047.3968 kcal/mol (3046.8847 without restraints) Performing minimization step: 4475. Total energy = 3046.7037 kcal/mol (3046.1918 without restraints) Performing minimization step: 4476. Total energy = 3046.0108 kcal/mol (3045.4990 without restraints) Performing minimization step: 4477. Total energy = 3045.3176 kcal/mol (3044.8059 without restraints) Performing minimization step: 4478. Total energy = 3044.6244 kcal/mol (3044.1128 without restraints) Performing minimization step: 4479. Total energy = 3043.9307 kcal/mol (3043.4193 without restraints) Performing minimization step: 4480. Total energy = 3043.2375 kcal/mol (3042.7262 without restraints) Performing minimization step: 4481. Total energy = 3042.5444 kcal/mol (3042.0333 without restraints) Performing minimization step: 4482. Total energy = 3041.8512 kcal/mol (3041.3402 without restraints) Performing minimization step: 4483. Total energy = 3041.1581 kcal/mol (3040.6472 without restraints) Performing minimization step: 4484. Total energy = 3040.4652 kcal/mol (3039.9545 without restraints) Performing minimization step: 4485. Total energy = 3039.7722 kcal/mol (3039.2616 without restraints) Performing minimization step: 4486. Total energy = 3039.0792 kcal/mol (3038.5688 without restraints) Performing minimization step: 4487. Total energy = 3038.3865 kcal/mol (3037.8762 without restraints) Performing minimization step: 4488. Total energy = 3037.6940 kcal/mol (3037.1839 without restraints) Performing minimization step: 4489. Total energy = 3037.0017 kcal/mol (3036.4917 without restraints) Performing minimization step: 4490. Total energy = 3036.3095 kcal/mol (3035.7997 without restraints) Performing minimization step: 4491. Total energy = 3035.6176 kcal/mol (3035.1080 without restraints) Performing minimization step: 4492. Total energy = 3034.9260 kcal/mol (3034.4165 without restraints) Performing minimization step: 4493. Total energy = 3034.2347 kcal/mol (3033.7253 without restraints) Performing minimization step: 4494. Total energy = 3033.5437 kcal/mol (3033.0345 without restraints) Performing minimization step: 4495. Total energy = 3032.8530 kcal/mol (3032.3439 without restraints) Performing minimization step: 4496. Total energy = 3032.1626 kcal/mol (3031.6537 without restraints) Performing minimization step: 4497. Total energy = 3031.4726 kcal/mol (3030.9639 without restraints) Performing minimization step: 4498. Total energy = 3030.7830 kcal/mol (3030.2745 without restraints) Performing minimization step: 4499. Total energy = 3030.0938 kcal/mol (3029.5855 without restraints) Performing minimization step: 4500. Total energy = 3029.4051 kcal/mol (3028.8970 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 3028.7168 kcal/mol (3028.2089 without restraints) Performing minimization step: 4502. Total energy = 3028.0290 kcal/mol (3027.5213 without restraints) Performing minimization step: 4503. Total energy = 3027.3420 kcal/mol (3026.8346 without restraints) Performing minimization step: 4504. Total energy = 3026.6554 kcal/mol (3026.1480 without restraints) Performing minimization step: 4505. Total energy = 3025.9692 kcal/mol (3025.4621 without restraints) Performing minimization step: 4506. Total energy = 3025.2837 kcal/mol (3024.7767 without restraints) Performing minimization step: 4507. Total energy = 3024.5987 kcal/mol (3024.0919 without restraints) Performing minimization step: 4508. Total energy = 3023.9142 kcal/mol (3023.4076 without restraints) Performing minimization step: 4509. Total energy = 3023.2305 kcal/mol (3022.7241 without restraints) Performing minimization step: 4510. Total energy = 3022.5475 kcal/mol (3022.0413 without restraints) Performing minimization step: 4511. Total energy = 3021.8652 kcal/mol (3021.3593 without restraints) Performing minimization step: 4512. Total energy = 3021.1837 kcal/mol (3020.6780 without restraints) Performing minimization step: 4513. Total energy = 3020.5031 kcal/mol (3019.9976 without restraints) Performing minimization step: 4514. Total energy = 3019.8230 kcal/mol (3019.3177 without restraints) Performing minimization step: 4515. Total energy = 3019.1438 kcal/mol (3018.6388 without restraints) Performing minimization step: 4516. Total energy = 3018.4654 kcal/mol (3017.9606 without restraints) Performing minimization step: 4517. Total energy = 3017.7878 kcal/mol (3017.2832 without restraints) Performing minimization step: 4518. Total energy = 3017.1111 kcal/mol (3016.6068 without restraints) Performing minimization step: 4519. Total energy = 3016.4355 kcal/mol (3015.9314 without restraints) Performing minimization step: 4520. Total energy = 3015.7604 kcal/mol (3015.2565 without restraints) Performing minimization step: 4521. Total energy = 3015.0864 kcal/mol (3014.5827 without restraints) Performing minimization step: 4522. Total energy = 3014.4133 kcal/mol (3013.9099 without restraints) Performing minimization step: 4523. Total energy = 3013.7411 kcal/mol (3013.2380 without restraints) Performing minimization step: 4524. Total energy = 3013.0700 kcal/mol (3012.5671 without restraints) Performing minimization step: 4525. Total energy = 3012.4003 kcal/mol (3011.8977 without restraints) Performing minimization step: 4526. Total energy = 3011.7312 kcal/mol (3011.2288 without restraints) Performing minimization step: 4527. Total energy = 3011.0631 kcal/mol (3010.5609 without restraints) Performing minimization step: 4528. Total energy = 3010.3961 kcal/mol (3009.8942 without restraints) Performing minimization step: 4529. Total energy = 3009.7302 kcal/mol (3009.2287 without restraints) Performing minimization step: 4530. Total energy = 3009.0655 kcal/mol (3008.5641 without restraints) Performing minimization step: 4531. Total energy = 3008.4020 kcal/mol (3007.9009 without restraints) Performing minimization step: 4532. Total energy = 3007.7394 kcal/mol (3007.2385 without restraints) Performing minimization step: 4533. Total energy = 3007.0779 kcal/mol (3006.5774 without restraints) Performing minimization step: 4534. Total energy = 3006.4178 kcal/mol (3005.9175 without restraints) Performing minimization step: 4535. Total energy = 3005.7586 kcal/mol (3005.2585 without restraints) Performing minimization step: 4536. Total energy = 3005.1009 kcal/mol (3004.6011 without restraints) Performing minimization step: 4537. Total energy = 3004.4442 kcal/mol (3003.9447 without restraints) Performing minimization step: 4538. Total energy = 3003.7887 kcal/mol (3003.2895 without restraints) Performing minimization step: 4539. Total energy = 3003.1345 kcal/mol (3002.6355 without restraints) Performing minimization step: 4540. Total energy = 3002.4815 kcal/mol (3001.9828 without restraints) Performing minimization step: 4541. Total energy = 3001.8298 kcal/mol (3001.3314 without restraints) Performing minimization step: 4542. Total energy = 3001.1794 kcal/mol (3000.6813 without restraints) Performing minimization step: 4543. Total energy = 3000.5302 kcal/mol (3000.0324 without restraints) Performing minimization step: 4544. Total energy = 2999.8826 kcal/mol (2999.3851 without restraints) Performing minimization step: 4545. Total energy = 2999.2363 kcal/mol (2998.7391 without restraints) Performing minimization step: 4546. Total energy = 2998.5911 kcal/mol (2998.0942 without restraints) Performing minimization step: 4547. Total energy = 2997.9473 kcal/mol (2997.4506 without restraints) Performing minimization step: 4548. Total energy = 2997.3048 kcal/mol (2996.8084 without restraints) Performing minimization step: 4549. Total energy = 2996.6637 kcal/mol (2996.1676 without restraints) Performing minimization step: 4550. Total energy = 2996.0240 kcal/mol (2995.5283 without restraints) Performing minimization step: 4551. Total energy = 2995.3859 kcal/mol (2994.8905 without restraints) Performing minimization step: 4552. Total energy = 2994.7489 kcal/mol (2994.2538 without restraints) Performing minimization step: 4553. Total energy = 2994.1134 kcal/mol (2993.6185 without restraints) Performing minimization step: 4554. Total energy = 2993.4791 kcal/mol (2992.9845 without restraints) Performing minimization step: 4555. Total energy = 2992.8463 kcal/mol (2992.3520 without restraints) Performing minimization step: 4556. Total energy = 2992.2150 kcal/mol (2991.7212 without restraints) Performing minimization step: 4557. Total energy = 2991.5850 kcal/mol (2991.0913 without restraints) Performing minimization step: 4558. Total energy = 2990.9565 kcal/mol (2990.4632 without restraints) Performing minimization step: 4559. Total energy = 2990.3295 kcal/mol (2989.8365 without restraints) Performing minimization step: 4560. Total energy = 2989.7039 kcal/mol (2989.2112 without restraints) Performing minimization step: 4561. Total energy = 2989.0799 kcal/mol (2988.5876 without restraints) Performing minimization step: 4562. Total energy = 2988.4573 kcal/mol (2987.9652 without restraints) Performing minimization step: 4563. Total energy = 2987.8362 kcal/mol (2987.3443 without restraints) Performing minimization step: 4564. Total energy = 2987.2169 kcal/mol (2986.7255 without restraints) Performing minimization step: 4565. Total energy = 2986.5988 kcal/mol (2986.1075 without restraints) Performing minimization step: 4566. Total energy = 2985.9820 kcal/mol (2985.4911 without restraints) Performing minimization step: 4567. Total energy = 2985.3665 kcal/mol (2984.8759 without restraints) Performing minimization step: 4568. Total energy = 2984.7527 kcal/mol (2984.2625 without restraints) Performing minimization step: 4569. Total energy = 2984.1404 kcal/mol (2983.6505 without restraints) Performing minimization step: 4570. Total energy = 2983.5296 kcal/mol (2983.0400 without restraints) Performing minimization step: 4571. Total energy = 2982.9202 kcal/mol (2982.4308 without restraints) Performing minimization step: 4572. Total energy = 2982.3125 kcal/mol (2981.8235 without restraints) Performing minimization step: 4573. Total energy = 2981.7060 kcal/mol (2981.2173 without restraints) Performing minimization step: 4574. Total energy = 2981.1012 kcal/mol (2980.6128 without restraints) Performing minimization step: 4575. Total energy = 2980.4979 kcal/mol (2980.0098 without restraints) Performing minimization step: 4576. Total energy = 2979.8962 kcal/mol (2979.4085 without restraints) Performing minimization step: 4577. Total energy = 2979.2959 kcal/mol (2978.8084 without restraints) Performing minimization step: 4578. Total energy = 2978.6969 kcal/mol (2978.2097 without restraints) Performing minimization step: 4579. Total energy = 2978.0995 kcal/mol (2977.6127 without restraints) Performing minimization step: 4580. Total energy = 2977.5037 kcal/mol (2977.0172 without restraints) Performing minimization step: 4581. Total energy = 2976.9096 kcal/mol (2976.4234 without restraints) Performing minimization step: 4582. Total energy = 2976.3168 kcal/mol (2975.8310 without restraints) Performing minimization step: 4583. Total energy = 2975.7255 kcal/mol (2975.2400 without restraints) Performing minimization step: 4584. Total energy = 2975.1359 kcal/mol (2974.6507 without restraints) Performing minimization step: 4585. Total energy = 2974.5476 kcal/mol (2974.0627 without restraints) Performing minimization step: 4586. Total energy = 2973.9608 kcal/mol (2973.4761 without restraints) Performing minimization step: 4587. Total energy = 2973.3754 kcal/mol (2972.8911 without restraints) Performing minimization step: 4588. Total energy = 2972.7916 kcal/mol (2972.3076 without restraints) Performing minimization step: 4589. Total energy = 2972.2092 kcal/mol (2971.7255 without restraints) Performing minimization step: 4590. Total energy = 2971.6284 kcal/mol (2971.1450 without restraints) Performing minimization step: 4591. Total energy = 2971.0490 kcal/mol (2970.5659 without restraints) Performing minimization step: 4592. Total energy = 2970.4714 kcal/mol (2969.9888 without restraints) Performing minimization step: 4593. Total energy = 2969.8949 kcal/mol (2969.4124 without restraints) Performing minimization step: 4594. Total energy = 2969.3199 kcal/mol (2968.8378 without restraints) Performing minimization step: 4595. Total energy = 2968.7464 kcal/mol (2968.2646 without restraints) Performing minimization step: 4596. Total energy = 2968.1744 kcal/mol (2967.6929 without restraints) Performing minimization step: 4597. Total energy = 2967.6038 kcal/mol (2967.1227 without restraints) Performing minimization step: 4598. Total energy = 2967.0348 kcal/mol (2966.5539 without restraints) Performing minimization step: 4599. Total energy = 2966.4671 kcal/mol (2965.9866 without restraints) Performing minimization step: 4600. Total energy = 2965.9009 kcal/mol (2965.4207 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 2965.3357 kcal/mol (2964.8558 without restraints) Performing minimization step: 4602. Total energy = 2964.7725 kcal/mol (2964.2929 without restraints) Performing minimization step: 4603. Total energy = 2964.2104 kcal/mol (2963.7311 without restraints) Performing minimization step: 4604. Total energy = 2963.6500 kcal/mol (2963.1710 without restraints) Performing minimization step: 4605. Total energy = 2963.0909 kcal/mol (2962.6122 without restraints) Performing minimization step: 4606. Total energy = 2962.5335 kcal/mol (2962.0552 without restraints) Performing minimization step: 4607. Total energy = 2961.9776 kcal/mol (2961.4995 without restraints) Performing minimization step: 4608. Total energy = 2961.4228 kcal/mol (2960.9451 without restraints) Performing minimization step: 4609. Total energy = 2960.8695 kcal/mol (2960.3920 without restraints) Performing minimization step: 4610. Total energy = 2960.3175 kcal/mol (2959.8404 without restraints) Performing minimization step: 4611. Total energy = 2959.7670 kcal/mol (2959.2901 without restraints) Performing minimization step: 4612. Total energy = 2959.2178 kcal/mol (2958.7413 without restraints) Performing minimization step: 4613. Total energy = 2958.6701 kcal/mol (2958.1939 without restraints) Performing minimization step: 4614. Total energy = 2958.1237 kcal/mol (2957.6478 without restraints) Performing minimization step: 4615. Total energy = 2957.5788 kcal/mol (2957.1032 without restraints) Performing minimization step: 4616. Total energy = 2957.0352 kcal/mol (2956.5599 without restraints) Performing minimization step: 4617. Total energy = 2956.4928 kcal/mol (2956.0178 without restraints) Performing minimization step: 4618. Total energy = 2955.9519 kcal/mol (2955.4772 without restraints) Performing minimization step: 4619. Total energy = 2955.4124 kcal/mol (2954.9380 without restraints) Performing minimization step: 4620. Total energy = 2954.8742 kcal/mol (2954.4001 without restraints) Performing minimization step: 4621. Total energy = 2954.3373 kcal/mol (2953.8635 without restraints) Performing minimization step: 4622. Total energy = 2953.8018 kcal/mol (2953.3283 without restraints) Performing minimization step: 4623. Total energy = 2953.2676 kcal/mol (2952.7944 without restraints) Performing minimization step: 4624. Total energy = 2952.7347 kcal/mol (2952.2618 without restraints) Performing minimization step: 4625. Total energy = 2952.2031 kcal/mol (2951.7305 without restraints) Performing minimization step: 4626. Total energy = 2951.6728 kcal/mol (2951.2005 without restraints) Performing minimization step: 4627. Total energy = 2951.1439 kcal/mol (2950.6719 without restraints) Performing minimization step: 4628. Total energy = 2950.6162 kcal/mol (2950.1446 without restraints) Performing minimization step: 4629. Total energy = 2950.0901 kcal/mol (2949.6188 without restraints) Performing minimization step: 4630. Total energy = 2949.5651 kcal/mol (2949.0940 without restraints) Performing minimization step: 4631. Total energy = 2949.0412 kcal/mol (2948.5705 without restraints) Performing minimization step: 4632. Total energy = 2948.5190 kcal/mol (2948.0485 without restraints) Performing minimization step: 4633. Total energy = 2947.9977 kcal/mol (2947.5275 without restraints) Performing minimization step: 4634. Total energy = 2947.4776 kcal/mol (2947.0077 without restraints) Performing minimization step: 4635. Total energy = 2946.9589 kcal/mol (2946.4894 without restraints) Performing minimization step: 4636. Total energy = 2946.4415 kcal/mol (2945.9722 without restraints) Performing minimization step: 4637. Total energy = 2945.9252 kcal/mol (2945.4562 without restraints) Performing minimization step: 4638. Total energy = 2945.4102 kcal/mol (2944.9415 without restraints) Performing minimization step: 4639. Total energy = 2944.8964 kcal/mol (2944.4280 without restraints) Performing minimization step: 4640. Total energy = 2944.3839 kcal/mol (2943.9157 without restraints) Performing minimization step: 4641. Total energy = 2943.8725 kcal/mol (2943.4046 without restraints) Performing minimization step: 4642. Total energy = 2943.3624 kcal/mol (2942.8948 without restraints) Performing minimization step: 4643. Total energy = 2942.8535 kcal/mol (2942.3864 without restraints) Performing minimization step: 4644. Total energy = 2942.3458 kcal/mol (2941.8789 without restraints) Performing minimization step: 4645. Total energy = 2941.8393 kcal/mol (2941.3726 without restraints) Performing minimization step: 4646. Total energy = 2941.3338 kcal/mol (2940.8674 without restraints) Performing minimization step: 4647. Total energy = 2940.8297 kcal/mol (2940.3637 without restraints) Performing minimization step: 4648. Total energy = 2940.3267 kcal/mol (2939.8609 without restraints) Performing minimization step: 4649. Total energy = 2939.8248 kcal/mol (2939.3592 without restraints) Performing minimization step: 4650. Total energy = 2939.3237 kcal/mol (2938.8584 without restraints) Performing minimization step: 4651. Total energy = 2938.8240 kcal/mol (2938.3591 without restraints) Performing minimization step: 4652. Total energy = 2938.3256 kcal/mol (2937.8609 without restraints) Performing minimization step: 4653. Total energy = 2937.8283 kcal/mol (2937.3639 without restraints) Performing minimization step: 4654. Total energy = 2937.3320 kcal/mol (2936.8679 without restraints) Performing minimization step: 4655. Total energy = 2936.8371 kcal/mol (2936.3733 without restraints) Performing minimization step: 4656. Total energy = 2936.3431 kcal/mol (2935.8796 without restraints) Performing minimization step: 4657. Total energy = 2935.8503 kcal/mol (2935.3870 without restraints) Performing minimization step: 4658. Total energy = 2935.3585 kcal/mol (2934.8955 without restraints) Performing minimization step: 4659. Total energy = 2934.8676 kcal/mol (2934.4049 without restraints) Performing minimization step: 4660. Total energy = 2934.3780 kcal/mol (2933.9155 without restraints) Performing minimization step: 4661. Total energy = 2933.8894 kcal/mol (2933.4272 without restraints) Performing minimization step: 4662. Total energy = 2933.4019 kcal/mol (2932.9400 without restraints) Performing minimization step: 4663. Total energy = 2932.9155 kcal/mol (2932.4539 without restraints) Performing minimization step: 4664. Total energy = 2932.4304 kcal/mol (2931.9691 without restraints) Performing minimization step: 4665. Total energy = 2931.9461 kcal/mol (2931.4851 without restraints) Performing minimization step: 4666. Total energy = 2931.4630 kcal/mol (2931.0023 without restraints) Performing minimization step: 4667. Total energy = 2930.9809 kcal/mol (2930.5204 without restraints) Performing minimization step: 4668. Total energy = 2930.4998 kcal/mol (2930.0395 without restraints) Performing minimization step: 4669. Total energy = 2930.0196 kcal/mol (2929.5596 without restraints) Performing minimization step: 4670. Total energy = 2929.5405 kcal/mol (2929.0808 without restraints) Performing minimization step: 4671. Total energy = 2929.0624 kcal/mol (2928.6029 without restraints) Performing minimization step: 4672. Total energy = 2928.5852 kcal/mol (2928.1261 without restraints) Performing minimization step: 4673. Total energy = 2928.1091 kcal/mol (2927.6502 without restraints) Performing minimization step: 4674. Total energy = 2927.6342 kcal/mol (2927.1755 without restraints) Performing minimization step: 4675. Total energy = 2927.1598 kcal/mol (2926.7014 without restraints) Performing minimization step: 4676. Total energy = 2926.6868 kcal/mol (2926.2287 without restraints) Performing minimization step: 4677. Total energy = 2926.2146 kcal/mol (2925.7568 without restraints) Performing minimization step: 4678. Total energy = 2925.7434 kcal/mol (2925.2858 without restraints) Performing minimization step: 4679. Total energy = 2925.2732 kcal/mol (2924.8159 without restraints) Performing minimization step: 4680. Total energy = 2924.8039 kcal/mol (2924.3469 without restraints) Performing minimization step: 4681. Total energy = 2924.3355 kcal/mol (2923.8788 without restraints) Performing minimization step: 4682. Total energy = 2923.8681 kcal/mol (2923.4116 without restraints) Performing minimization step: 4683. Total energy = 2923.4017 kcal/mol (2922.9454 without restraints) Performing minimization step: 4684. Total energy = 2922.9364 kcal/mol (2922.4804 without restraints) Performing minimization step: 4685. Total energy = 2922.4718 kcal/mol (2922.0161 without restraints) Performing minimization step: 4686. Total energy = 2922.0084 kcal/mol (2921.5529 without restraints) Performing minimization step: 4687. Total energy = 2921.5456 kcal/mol (2921.0904 without restraints) Performing minimization step: 4688. Total energy = 2921.0838 kcal/mol (2920.6289 without restraints) Performing minimization step: 4689. Total energy = 2920.6228 kcal/mol (2920.1681 without restraints) Performing minimization step: 4690. Total energy = 2920.1628 kcal/mol (2919.7084 without restraints) Performing minimization step: 4691. Total energy = 2919.7039 kcal/mol (2919.2497 without restraints) Performing minimization step: 4692. Total energy = 2919.2456 kcal/mol (2918.7917 without restraints) Performing minimization step: 4693. Total energy = 2918.7882 kcal/mol (2918.3346 without restraints) Performing minimization step: 4694. Total energy = 2918.3318 kcal/mol (2917.8784 without restraints) Performing minimization step: 4695. Total energy = 2917.8759 kcal/mol (2917.4228 without restraints) Performing minimization step: 4696. Total energy = 2917.4211 kcal/mol (2916.9683 without restraints) Performing minimization step: 4697. Total energy = 2916.9672 kcal/mol (2916.5146 without restraints) Performing minimization step: 4698. Total energy = 2916.5143 kcal/mol (2916.0620 without restraints) Performing minimization step: 4699. Total energy = 2916.0621 kcal/mol (2915.6101 without restraints) Performing minimization step: 4700. Total energy = 2915.6108 kcal/mol (2915.1590 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 2915.1604 kcal/mol (2914.7088 without restraints) Performing minimization step: 4702. Total energy = 2914.7107 kcal/mol (2914.2593 without restraints) Performing minimization step: 4703. Total energy = 2914.2622 kcal/mol (2913.8111 without restraints) Performing minimization step: 4704. Total energy = 2913.8142 kcal/mol (2913.3633 without restraints) Performing minimization step: 4705. Total energy = 2913.3671 kcal/mol (2912.9165 without restraints) Performing minimization step: 4706. Total energy = 2912.9209 kcal/mol (2912.4705 without restraints) Performing minimization step: 4707. Total energy = 2912.4752 kcal/mol (2912.0251 without restraints) Performing minimization step: 4708. Total energy = 2912.0300 kcal/mol (2911.5801 without restraints) Performing minimization step: 4709. Total energy = 2911.5859 kcal/mol (2911.1363 without restraints) Performing minimization step: 4710. Total energy = 2911.1426 kcal/mol (2910.6933 without restraints) Performing minimization step: 4711. Total energy = 2910.7001 kcal/mol (2910.2508 without restraints) Performing minimization step: 4712. Total energy = 2910.2585 kcal/mol (2909.8096 without restraints) Performing minimization step: 4713. Total energy = 2909.8175 kcal/mol (2909.3689 without restraints) Performing minimization step: 4714. Total energy = 2909.3773 kcal/mol (2908.9289 without restraints) Performing minimization step: 4715. Total energy = 2908.9379 kcal/mol (2908.4898 without restraints) Performing minimization step: 4716. Total energy = 2908.4992 kcal/mol (2908.0513 without restraints) Performing minimization step: 4717. Total energy = 2908.0616 kcal/mol (2907.6140 without restraints) Performing minimization step: 4718. Total energy = 2907.6249 kcal/mol (2907.1775 without restraints) Performing minimization step: 4719. Total energy = 2907.1886 kcal/mol (2906.7415 without restraints) Performing minimization step: 4720. Total energy = 2906.7528 kcal/mol (2906.3059 without restraints) Performing minimization step: 4721. Total energy = 2906.3179 kcal/mol (2905.8712 without restraints) Performing minimization step: 4722. Total energy = 2905.8841 kcal/mol (2905.4377 without restraints) Performing minimization step: 4723. Total energy = 2905.4506 kcal/mol (2905.0044 without restraints) Performing minimization step: 4724. Total energy = 2905.0178 kcal/mol (2904.5718 without restraints) Performing minimization step: 4725. Total energy = 2904.5858 kcal/mol (2904.1401 without restraints) Performing minimization step: 4726. Total energy = 2904.1544 kcal/mol (2903.7089 without restraints) Performing minimization step: 4727. Total energy = 2903.7238 kcal/mol (2903.2785 without restraints) Performing minimization step: 4728. Total energy = 2903.2937 kcal/mol (2902.8488 without restraints) Performing minimization step: 4729. Total energy = 2902.8646 kcal/mol (2902.4198 without restraints) Performing minimization step: 4730. Total energy = 2902.4360 kcal/mol (2901.9915 without restraints) Performing minimization step: 4731. Total energy = 2902.0084 kcal/mol (2901.5641 without restraints) Performing minimization step: 4732. Total energy = 2901.5812 kcal/mol (2901.1371 without restraints) Performing minimization step: 4733. Total energy = 2901.1547 kcal/mol (2900.7108 without restraints) Performing minimization step: 4734. Total energy = 2900.7289 kcal/mol (2900.2852 without restraints) Performing minimization step: 4735. Total energy = 2900.3041 kcal/mol (2899.8607 without restraints) Performing minimization step: 4736. Total energy = 2899.8798 kcal/mol (2899.4367 without restraints) Performing minimization step: 4737. Total energy = 2899.4560 kcal/mol (2899.0131 without restraints) Performing minimization step: 4738. Total energy = 2899.0328 kcal/mol (2898.5901 without restraints) Performing minimization step: 4739. Total energy = 2898.6104 kcal/mol (2898.1680 without restraints) Performing minimization step: 4740. Total energy = 2898.1885 kcal/mol (2897.7463 without restraints) Performing minimization step: 4741. Total energy = 2897.7673 kcal/mol (2897.3253 without restraints) Performing minimization step: 4742. Total energy = 2897.3467 kcal/mol (2896.9049 without restraints) Performing minimization step: 4743. Total energy = 2896.9267 kcal/mol (2896.4852 without restraints) Performing minimization step: 4744. Total energy = 2896.5074 kcal/mol (2896.0661 without restraints) Performing minimization step: 4745. Total energy = 2896.0887 kcal/mol (2895.6476 without restraints) Performing minimization step: 4746. Total energy = 2895.6704 kcal/mol (2895.2295 without restraints) Performing minimization step: 4747. Total energy = 2895.2529 kcal/mol (2894.8123 without restraints) Performing minimization step: 4748. Total energy = 2894.8360 kcal/mol (2894.3956 without restraints) Performing minimization step: 4749. Total energy = 2894.4198 kcal/mol (2893.9796 without restraints) Performing minimization step: 4750. Total energy = 2894.0043 kcal/mol (2893.5645 without restraints) Performing minimization step: 4751. Total energy = 2893.5894 kcal/mol (2893.1497 without restraints) Performing minimization step: 4752. Total energy = 2893.1750 kcal/mol (2892.7355 without restraints) Performing minimization step: 4753. Total energy = 2892.7612 kcal/mol (2892.3219 without restraints) Performing minimization step: 4754. Total energy = 2892.3480 kcal/mol (2891.9090 without restraints) Performing minimization step: 4755. Total energy = 2891.9353 kcal/mol (2891.4965 without restraints) Performing minimization step: 4756. Total energy = 2891.5231 kcal/mol (2891.0845 without restraints) Performing minimization step: 4757. Total energy = 2891.1117 kcal/mol (2890.6733 without restraints) Performing minimization step: 4758. Total energy = 2890.7008 kcal/mol (2890.2627 without restraints) Performing minimization step: 4759. Total energy = 2890.2905 kcal/mol (2889.8526 without restraints) Performing minimization step: 4760. Total energy = 2889.8810 kcal/mol (2889.4432 without restraints) Performing minimization step: 4761. Total energy = 2889.4719 kcal/mol (2889.0345 without restraints) Performing minimization step: 4762. Total energy = 2889.0635 kcal/mol (2888.6263 without restraints) Performing minimization step: 4763. Total energy = 2888.6556 kcal/mol (2888.2185 without restraints) Performing minimization step: 4764. Total energy = 2888.2481 kcal/mol (2887.8113 without restraints) Performing minimization step: 4765. Total energy = 2887.8412 kcal/mol (2887.4046 without restraints) Performing minimization step: 4766. Total energy = 2887.4349 kcal/mol (2886.9985 without restraints) Performing minimization step: 4767. Total energy = 2887.0291 kcal/mol (2886.5929 without restraints) Performing minimization step: 4768. Total energy = 2886.6238 kcal/mol (2886.1878 without restraints) Performing minimization step: 4769. Total energy = 2886.2191 kcal/mol (2885.7834 without restraints) Performing minimization step: 4770. Total energy = 2885.8149 kcal/mol (2885.3794 without restraints) Performing minimization step: 4771. Total energy = 2885.4113 kcal/mol (2884.9760 without restraints) Performing minimization step: 4772. Total energy = 2885.0082 kcal/mol (2884.5731 without restraints) Performing minimization step: 4773. Total energy = 2884.6057 kcal/mol (2884.1708 without restraints) Performing minimization step: 4774. Total energy = 2884.2041 kcal/mol (2883.7694 without restraints) Performing minimization step: 4775. Total energy = 2883.8026 kcal/mol (2883.3681 without restraints) Performing minimization step: 4776. Total energy = 2883.4016 kcal/mol (2882.9674 without restraints) Performing minimization step: 4777. Total energy = 2883.0011 kcal/mol (2882.5671 without restraints) Performing minimization step: 4778. Total energy = 2882.6013 kcal/mol (2882.1674 without restraints) Performing minimization step: 4779. Total energy = 2882.2018 kcal/mol (2881.7682 without restraints) Performing minimization step: 4780. Total energy = 2881.8029 kcal/mol (2881.3695 without restraints) Performing minimization step: 4781. Total energy = 2881.4045 kcal/mol (2880.9713 without restraints) Performing minimization step: 4782. Total energy = 2881.0065 kcal/mol (2880.5736 without restraints) Performing minimization step: 4783. Total energy = 2880.6094 kcal/mol (2880.1766 without restraints) Performing minimization step: 4784. Total energy = 2880.2127 kcal/mol (2879.7802 without restraints) Performing minimization step: 4785. Total energy = 2879.8163 kcal/mol (2879.3840 without restraints) Performing minimization step: 4786. Total energy = 2879.4204 kcal/mol (2878.9883 without restraints) Performing minimization step: 4787. Total energy = 2879.0249 kcal/mol (2878.5930 without restraints) Performing minimization step: 4788. Total energy = 2878.6300 kcal/mol (2878.1983 without restraints) Performing minimization step: 4789. Total energy = 2878.2359 kcal/mol (2877.8044 without restraints) Performing minimization step: 4790. Total energy = 2877.8420 kcal/mol (2877.4107 without restraints) Performing minimization step: 4791. Total energy = 2877.4483 kcal/mol (2877.0172 without restraints) Performing minimization step: 4792. Total energy = 2877.0553 kcal/mol (2876.6244 without restraints) Performing minimization step: 4793. Total energy = 2876.6627 kcal/mol (2876.2321 without restraints) Performing minimization step: 4794. Total energy = 2876.2704 kcal/mol (2875.8399 without restraints) Performing minimization step: 4795. Total energy = 2875.8788 kcal/mol (2875.4486 without restraints) Performing minimization step: 4796. Total energy = 2875.4877 kcal/mol (2875.0578 without restraints) Performing minimization step: 4797. Total energy = 2875.0973 kcal/mol (2874.6676 without restraints) Performing minimization step: 4798. Total energy = 2874.7072 kcal/mol (2874.2776 without restraints) Performing minimization step: 4799. Total energy = 2874.3173 kcal/mol (2873.8879 without restraints) Performing minimization step: 4800. Total energy = 2873.9280 kcal/mol (2873.4988 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 2873.5392 kcal/mol (2873.1102 without restraints) Performing minimization step: 4802. Total energy = 2873.1508 kcal/mol (2872.7220 without restraints) Performing minimization step: 4803. Total energy = 2872.7631 kcal/mol (2872.3345 without restraints) Performing minimization step: 4804. Total energy = 2872.3754 kcal/mol (2871.9470 without restraints) Performing minimization step: 4805. Total energy = 2871.9878 kcal/mol (2871.5596 without restraints) Performing minimization step: 4806. Total energy = 2871.6012 kcal/mol (2871.1732 without restraints) Performing minimization step: 4807. Total energy = 2871.2153 kcal/mol (2870.7875 without restraints) Performing minimization step: 4808. Total energy = 2870.8296 kcal/mol (2870.4020 without restraints) Performing minimization step: 4809. Total energy = 2870.4446 kcal/mol (2870.0172 without restraints) Performing minimization step: 4810. Total energy = 2870.0597 kcal/mol (2869.6325 without restraints) Performing minimization step: 4811. Total energy = 2869.6753 kcal/mol (2869.2484 without restraints) Performing minimization step: 4812. Total energy = 2869.2914 kcal/mol (2868.8646 without restraints) Performing minimization step: 4813. Total energy = 2868.9077 kcal/mol (2868.4811 without restraints) Performing minimization step: 4814. Total energy = 2868.5246 kcal/mol (2868.0982 without restraints) Performing minimization step: 4815. Total energy = 2868.1419 kcal/mol (2867.7157 without restraints) Performing minimization step: 4816. Total energy = 2867.7599 kcal/mol (2867.3339 without restraints) Performing minimization step: 4817. Total energy = 2867.3780 kcal/mol (2866.9523 without restraints) Performing minimization step: 4818. Total energy = 2866.9966 kcal/mol (2866.5710 without restraints) Performing minimization step: 4819. Total energy = 2866.6160 kcal/mol (2866.1907 without restraints) Performing minimization step: 4820. Total energy = 2866.2355 kcal/mol (2865.8103 without restraints) Performing minimization step: 4821. Total energy = 2865.8553 kcal/mol (2865.4303 without restraints) Performing minimization step: 4822. Total energy = 2865.4755 kcal/mol (2865.0507 without restraints) Performing minimization step: 4823. Total energy = 2865.0962 kcal/mol (2864.6716 without restraints) Performing minimization step: 4824. Total energy = 2864.7176 kcal/mol (2864.2932 without restraints) Performing minimization step: 4825. Total energy = 2864.3391 kcal/mol (2863.9149 without restraints) Performing minimization step: 4826. Total energy = 2863.9609 kcal/mol (2863.5369 without restraints) Performing minimization step: 4827. Total energy = 2863.5831 kcal/mol (2863.1591 without restraints) Performing minimization step: 4828. Total energy = 2863.2058 kcal/mol (2862.7822 without restraints) Performing minimization step: 4829. Total energy = 2862.8291 kcal/mol (2862.4056 without restraints) Performing minimization step: 4830. Total energy = 2862.4525 kcal/mol (2862.0293 without restraints) Performing minimization step: 4831. Total energy = 2862.0764 kcal/mol (2861.6533 without restraints) Performing minimization step: 4832. Total energy = 2861.7006 kcal/mol (2861.2778 without restraints) Performing minimization step: 4833. Total energy = 2861.3254 kcal/mol (2860.9028 without restraints) Performing minimization step: 4834. Total energy = 2860.9505 kcal/mol (2860.5282 without restraints) Performing minimization step: 4835. Total energy = 2860.5760 kcal/mol (2860.1538 without restraints) Performing minimization step: 4836. Total energy = 2860.2019 kcal/mol (2859.7800 without restraints) Performing minimization step: 4837. Total energy = 2859.8285 kcal/mol (2859.4066 without restraints) Performing minimization step: 4838. Total energy = 2859.4552 kcal/mol (2859.0335 without restraints) Performing minimization step: 4839. Total energy = 2859.0825 kcal/mol (2858.6612 without restraints) Performing minimization step: 4840. Total energy = 2858.7099 kcal/mol (2858.2886 without restraints) Performing minimization step: 4841. Total energy = 2858.3376 kcal/mol (2857.9165 without restraints) Performing minimization step: 4842. Total energy = 2857.9657 kcal/mol (2857.5448 without restraints) Performing minimization step: 4843. Total energy = 2857.5941 kcal/mol (2857.1734 without restraints) Performing minimization step: 4844. Total energy = 2857.2230 kcal/mol (2856.8025 without restraints) Performing minimization step: 4845. Total energy = 2856.8522 kcal/mol (2856.4318 without restraints) Performing minimization step: 4846. Total energy = 2856.4817 kcal/mol (2856.0616 without restraints) Performing minimization step: 4847. Total energy = 2856.1118 kcal/mol (2855.6919 without restraints) Performing minimization step: 4848. Total energy = 2855.7421 kcal/mol (2855.3224 without restraints) Performing minimization step: 4849. Total energy = 2855.3728 kcal/mol (2854.9532 without restraints) Performing minimization step: 4850. Total energy = 2855.0038 kcal/mol (2854.5844 without restraints) Performing minimization step: 4851. Total energy = 2854.6351 kcal/mol (2854.2159 without restraints) Performing minimization step: 4852. Total energy = 2854.2665 kcal/mol (2853.8475 without restraints) Performing minimization step: 4853. Total energy = 2853.8986 kcal/mol (2853.4798 without restraints) Performing minimization step: 4854. Total energy = 2853.5311 kcal/mol (2853.1125 without restraints) Performing minimization step: 4855. Total energy = 2853.1639 kcal/mol (2852.7454 without restraints) Performing minimization step: 4856. Total energy = 2852.7973 kcal/mol (2852.3790 without restraints) Performing minimization step: 4857. Total energy = 2852.4308 kcal/mol (2852.0127 without restraints) Performing minimization step: 4858. Total energy = 2852.0646 kcal/mol (2851.6467 without restraints) Performing minimization step: 4859. Total energy = 2851.6990 kcal/mol (2851.2813 without restraints) Performing minimization step: 4860. Total energy = 2851.3335 kcal/mol (2850.9160 without restraints) Performing minimization step: 4861. Total energy = 2850.9684 kcal/mol (2850.5511 without restraints) Performing minimization step: 4862. Total energy = 2850.6038 kcal/mol (2850.1867 without restraints) Performing minimization step: 4863. Total energy = 2850.2394 kcal/mol (2849.8224 without restraints) Performing minimization step: 4864. Total energy = 2849.8753 kcal/mol (2849.4585 without restraints) Performing minimization step: 4865. Total energy = 2849.5113 kcal/mol (2849.0947 without restraints) Performing minimization step: 4866. Total energy = 2849.1479 kcal/mol (2848.7315 without restraints) Performing minimization step: 4867. Total energy = 2848.7849 kcal/mol (2848.3687 without restraints) Performing minimization step: 4868. Total energy = 2848.4225 kcal/mol (2848.0064 without restraints) Performing minimization step: 4869. Total energy = 2848.0601 kcal/mol (2847.6442 without restraints) Performing minimization step: 4870. Total energy = 2847.6983 kcal/mol (2847.2828 without restraints) Performing minimization step: 4871. Total energy = 2847.3367 kcal/mol (2846.9212 without restraints) Performing minimization step: 4872. Total energy = 2846.9753 kcal/mol (2846.5600 without restraints) Performing minimization step: 4873. Total energy = 2846.6142 kcal/mol (2846.1991 without restraints) Performing minimization step: 4874. Total energy = 2846.2534 kcal/mol (2845.8385 without restraints) Performing minimization step: 4875. Total energy = 2845.8933 kcal/mol (2845.4785 without restraints) Performing minimization step: 4876. Total energy = 2845.5332 kcal/mol (2845.1186 without restraints) Performing minimization step: 4877. Total energy = 2845.1734 kcal/mol (2844.7590 without restraints) Performing minimization step: 4878. Total energy = 2844.8140 kcal/mol (2844.3998 without restraints) Performing minimization step: 4879. Total energy = 2844.4551 kcal/mol (2844.0410 without restraints) Performing minimization step: 4880. Total energy = 2844.0963 kcal/mol (2843.6824 without restraints) Performing minimization step: 4881. Total energy = 2843.7379 kcal/mol (2843.3244 without restraints) Performing minimization step: 4882. Total energy = 2843.3801 kcal/mol (2842.9666 without restraints) Performing minimization step: 4883. Total energy = 2843.0225 kcal/mol (2842.6092 without restraints) Performing minimization step: 4884. Total energy = 2842.6650 kcal/mol (2842.2519 without restraints) Performing minimization step: 4885. Total energy = 2842.3078 kcal/mol (2841.8948 without restraints) Performing minimization step: 4886. Total energy = 2841.9509 kcal/mol (2841.5381 without restraints) Performing minimization step: 4887. Total energy = 2841.5946 kcal/mol (2841.1820 without restraints) Performing minimization step: 4888. Total energy = 2841.2384 kcal/mol (2840.8259 without restraints) Performing minimization step: 4889. Total energy = 2840.8824 kcal/mol (2840.4702 without restraints) Performing minimization step: 4890. Total energy = 2840.5268 kcal/mol (2840.1147 without restraints) Performing minimization step: 4891. Total energy = 2840.1715 kcal/mol (2839.7596 without restraints) Performing minimization step: 4892. Total energy = 2839.8165 kcal/mol (2839.4048 without restraints) Performing minimization step: 4893. Total energy = 2839.4617 kcal/mol (2839.0502 without restraints) Performing minimization step: 4894. Total energy = 2839.1071 kcal/mol (2838.6957 without restraints) Performing minimization step: 4895. Total energy = 2838.7529 kcal/mol (2838.3417 without restraints) Performing minimization step: 4896. Total energy = 2838.3991 kcal/mol (2837.9881 without restraints) Performing minimization step: 4897. Total energy = 2838.0459 kcal/mol (2837.6352 without restraints) Performing minimization step: 4898. Total energy = 2837.6928 kcal/mol (2837.2820 without restraints) Performing minimization step: 4899. Total energy = 2837.3398 kcal/mol (2836.9293 without restraints) Performing minimization step: 4900. Total energy = 2836.9873 kcal/mol (2836.5771 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 2836.6351 kcal/mol (2836.2249 without restraints) Performing minimization step: 4902. Total energy = 2836.2831 kcal/mol (2835.8731 without restraints) Performing minimization step: 4903. Total energy = 2835.9314 kcal/mol (2835.5216 without restraints) Performing minimization step: 4904. Total energy = 2835.5800 kcal/mol (2835.1704 without restraints) Performing minimization step: 4905. Total energy = 2835.2290 kcal/mol (2834.8197 without restraints) Performing minimization step: 4906. Total energy = 2834.8783 kcal/mol (2834.4691 without restraints) Performing minimization step: 4907. Total energy = 2834.5278 kcal/mol (2834.1187 without restraints) Performing minimization step: 4908. Total energy = 2834.1776 kcal/mol (2833.7687 without restraints) Performing minimization step: 4909. Total energy = 2833.8276 kcal/mol (2833.4190 without restraints) Performing minimization step: 4910. Total energy = 2833.4783 kcal/mol (2833.0697 without restraints) Performing minimization step: 4911. Total energy = 2833.1290 kcal/mol (2832.7206 without restraints) Performing minimization step: 4912. Total energy = 2832.7799 kcal/mol (2832.3717 without restraints) Performing minimization step: 4913. Total energy = 2832.4312 kcal/mol (2832.0231 without restraints) Performing minimization step: 4914. Total energy = 2832.0828 kcal/mol (2831.6750 without restraints) Performing minimization step: 4915. Total energy = 2831.7344 kcal/mol (2831.3267 without restraints) Performing minimization step: 4916. Total energy = 2831.3865 kcal/mol (2830.9790 without restraints) Performing minimization step: 4917. Total energy = 2831.0389 kcal/mol (2830.6315 without restraints) Performing minimization step: 4918. Total energy = 2830.6915 kcal/mol (2830.2843 without restraints) Performing minimization step: 4919. Total energy = 2830.3445 kcal/mol (2829.9374 without restraints) Performing minimization step: 4920. Total energy = 2829.9976 kcal/mol (2829.5908 without restraints) Performing minimization step: 4921. Total energy = 2829.6511 kcal/mol (2829.2444 without restraints) Performing minimization step: 4922. Total energy = 2829.3050 kcal/mol (2828.8985 without restraints) Performing minimization step: 4923. Total energy = 2828.9591 kcal/mol (2828.5528 without restraints) Performing minimization step: 4924. Total energy = 2828.6134 kcal/mol (2828.2073 without restraints) Performing minimization step: 4925. Total energy = 2828.2679 kcal/mol (2827.8619 without restraints) Performing minimization step: 4926. Total energy = 2827.9228 kcal/mol (2827.5170 without restraints) Performing minimization step: 4927. Total energy = 2827.5780 kcal/mol (2827.1723 without restraints) Performing minimization step: 4928. Total energy = 2827.2334 kcal/mol (2826.8279 without restraints) Performing minimization step: 4929. Total energy = 2826.8889 kcal/mol (2826.4836 without restraints) Performing minimization step: 4930. Total energy = 2826.5453 kcal/mol (2826.1401 without restraints) Performing minimization step: 4931. Total energy = 2826.2017 kcal/mol (2825.7968 without restraints) Performing minimization step: 4932. Total energy = 2825.8583 kcal/mol (2825.4535 without restraints) Performing minimization step: 4933. Total energy = 2825.5152 kcal/mol (2825.1105 without restraints) Performing minimization step: 4934. Total energy = 2825.1721 kcal/mol (2824.7676 without restraints) Performing minimization step: 4935. Total energy = 2824.8294 kcal/mol (2824.4251 without restraints) Performing minimization step: 4936. Total energy = 2824.4867 kcal/mol (2824.0825 without restraints) Performing minimization step: 4937. Total energy = 2824.1442 kcal/mol (2823.7401 without restraints) Performing minimization step: 4938. Total energy = 2823.8022 kcal/mol (2823.3984 without restraints) Performing minimization step: 4939. Total energy = 2823.4606 kcal/mol (2823.0570 without restraints) Performing minimization step: 4940. Total energy = 2823.1193 kcal/mol (2822.7159 without restraints) Performing minimization step: 4941. Total energy = 2822.7782 kcal/mol (2822.3749 without restraints) Performing minimization step: 4942. Total energy = 2822.4377 kcal/mol (2822.0345 without restraints) Performing minimization step: 4943. Total energy = 2822.0971 kcal/mol (2821.6941 without restraints) Performing minimization step: 4944. Total energy = 2821.7568 kcal/mol (2821.3540 without restraints) Performing minimization step: 4945. Total energy = 2821.4170 kcal/mol (2821.0144 without restraints) Performing minimization step: 4946. Total energy = 2821.0773 kcal/mol (2820.6748 without restraints) Performing minimization step: 4947. Total energy = 2820.7376 kcal/mol (2820.3352 without restraints) Performing minimization step: 4948. Total energy = 2820.3983 kcal/mol (2819.9962 without restraints) Performing minimization step: 4949. Total energy = 2820.0593 kcal/mol (2819.6573 without restraints) Performing minimization step: 4950. Total energy = 2819.7206 kcal/mol (2819.3188 without restraints) Performing minimization step: 4951. Total energy = 2819.3821 kcal/mol (2818.9804 without restraints) Performing minimization step: 4952. Total energy = 2819.0439 kcal/mol (2818.6424 without restraints) Performing minimization step: 4953. Total energy = 2818.7060 kcal/mol (2818.3046 without restraints) Performing minimization step: 4954. Total energy = 2818.3683 kcal/mol (2817.9671 without restraints) Performing minimization step: 4955. Total energy = 2818.0307 kcal/mol (2817.6296 without restraints) Performing minimization step: 4956. Total energy = 2817.6935 kcal/mol (2817.2926 without restraints) Performing minimization step: 4957. Total energy = 2817.3566 kcal/mol (2816.9559 without restraints) Performing minimization step: 4958. Total energy = 2817.0199 kcal/mol (2816.6193 without restraints) Performing minimization step: 4959. Total energy = 2816.6835 kcal/mol (2816.2831 without restraints) Performing minimization step: 4960. Total energy = 2816.3473 kcal/mol (2815.9471 without restraints) Performing minimization step: 4961. Total energy = 2816.0113 kcal/mol (2815.6113 without restraints) Performing minimization step: 4962. Total energy = 2815.6757 kcal/mol (2815.2758 without restraints) Performing minimization step: 4963. Total energy = 2815.3403 kcal/mol (2814.9407 without restraints) Performing minimization step: 4964. Total energy = 2815.0053 kcal/mol (2814.6057 without restraints) Performing minimization step: 4965. Total energy = 2814.6705 kcal/mol (2814.2711 without restraints) Performing minimization step: 4966. Total energy = 2814.3357 kcal/mol (2813.9365 without restraints) Performing minimization step: 4967. Total energy = 2814.0014 kcal/mol (2813.6023 without restraints) Performing minimization step: 4968. Total energy = 2813.6672 kcal/mol (2813.2682 without restraints) Performing minimization step: 4969. Total energy = 2813.3333 kcal/mol (2812.9345 without restraints) Performing minimization step: 4970. Total energy = 2812.9998 kcal/mol (2812.6011 without restraints) Performing minimization step: 4971. Total energy = 2812.6663 kcal/mol (2812.2678 without restraints) Performing minimization step: 4972. Total energy = 2812.3330 kcal/mol (2811.9347 without restraints) Performing minimization step: 4973. Total energy = 2812.0001 kcal/mol (2811.6019 without restraints) Performing minimization step: 4974. Total energy = 2811.6672 kcal/mol (2811.2692 without restraints) Performing minimization step: 4975. Total energy = 2811.3347 kcal/mol (2810.9369 without restraints) Performing minimization step: 4976. Total energy = 2811.0025 kcal/mol (2810.6048 without restraints) Performing minimization step: 4977. Total energy = 2810.6706 kcal/mol (2810.2731 without restraints) Performing minimization step: 4978. Total energy = 2810.3388 kcal/mol (2809.9415 without restraints) Performing minimization step: 4979. Total energy = 2810.0072 kcal/mol (2809.6100 without restraints) Performing minimization step: 4980. Total energy = 2809.6761 kcal/mol (2809.2791 without restraints) Performing minimization step: 4981. Total energy = 2809.3450 kcal/mol (2808.9481 without restraints) Performing minimization step: 4982. Total energy = 2809.0145 kcal/mol (2808.6177 without restraints) Performing minimization step: 4983. Total energy = 2808.6838 kcal/mol (2808.2873 without restraints) Performing minimization step: 4984. Total energy = 2808.3535 kcal/mol (2807.9570 without restraints) Performing minimization step: 4985. Total energy = 2808.0234 kcal/mol (2807.6271 without restraints) Performing minimization step: 4986. Total energy = 2807.6935 kcal/mol (2807.2973 without restraints) Performing minimization step: 4987. Total energy = 2807.3638 kcal/mol (2806.9679 without restraints) Performing minimization step: 4988. Total energy = 2807.0344 kcal/mol (2806.6386 without restraints) Performing minimization step: 4989. Total energy = 2806.7052 kcal/mol (2806.3095 without restraints) Performing minimization step: 4990. Total energy = 2806.3762 kcal/mol (2805.9807 without restraints) Performing minimization step: 4991. Total energy = 2806.0475 kcal/mol (2805.6523 without restraints) Performing minimization step: 4992. Total energy = 2805.7192 kcal/mol (2805.3240 without restraints) Performing minimization step: 4993. Total energy = 2805.3909 kcal/mol (2804.9959 without restraints) Performing minimization step: 4994. Total energy = 2805.0629 kcal/mol (2804.6680 without restraints) Performing minimization step: 4995. Total energy = 2804.7351 kcal/mol (2804.3403 without restraints) Performing minimization step: 4996. Total energy = 2804.4076 kcal/mol (2804.0130 without restraints) Performing minimization step: 4997. Total energy = 2804.0805 kcal/mol (2803.6861 without restraints) Performing minimization step: 4998. Total energy = 2803.7529 kcal/mol (2803.3586 without restraints) Performing minimization step: 4999. Total energy = 2803.4260 kcal/mol (2803.0319 without restraints) Performing minimization step: 5000. Total energy = 2803.0993 kcal/mol (2802.7053 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/110e9df0/tmp/temp_for_minimization_refx/temp_for_minimization_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to temp_for_minimization_refx.pdb DONE!