============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr.pdb ============================================================================= Atom's 1 O5' residue renamed to RA5 Atom's 2 C5' residue renamed to RA5 Atom's 3 C4' residue renamed to RA5 Atom's 4 O4' residue renamed to RA5 Atom's 5 C3' residue renamed to RA5 Atom's 6 O3' residue renamed to RA5 Atom's 7 C2' residue renamed to RA5 Atom's 8 O2' residue renamed to RA5 Atom's 9 C1' residue renamed to RA5 Atom's 10 N9 residue renamed to RA5 Atom's 11 C8 residue renamed to RA5 Atom's 12 N7 residue renamed to RA5 Atom's 13 C5 residue renamed to RA5 Atom's 14 C6 residue renamed to RA5 Atom's 15 N6 residue renamed to RA5 Atom's 16 N1 residue renamed to RA5 Atom's 17 C2 residue renamed to RA5 Atom's 18 N3 residue renamed to RA5 Atom's 19 C4 residue renamed to RA5 Atom's 450 C4 residue renamed to RA3 Atom's 449 N3 residue renamed to RA3 Atom's 448 C2 residue renamed to RA3 Atom's 447 N1 residue renamed to RA3 Atom's 446 N6 residue renamed to RA3 Atom's 445 C6 residue renamed to RA3 Atom's 444 C5 residue renamed to RA3 Atom's 443 N7 residue renamed to RA3 Atom's 442 C8 residue renamed to RA3 Atom's 441 N9 residue renamed to RA3 Atom's 440 C1' residue renamed to RA3 Atom's 439 O2' residue renamed to RA3 Atom's 438 C2' residue renamed to RA3 Atom's 437 O3' residue renamed to RA3 Atom's 436 C3' residue renamed to RA3 Atom's 435 O4' residue renamed to RA3 Atom's 434 C4' residue renamed to RA3 Atom's 433 C5' residue renamed to RA3 Atom's 432 O5' residue renamed to RA3 Atom's 431 OP2 residue renamed to RA3 Atom's 430 OP1 residue renamed to RA3 Atom's 429 P residue renamed to RA3 Missing atom added: ATOM 1 H5T RA5 A 1 260.253 240.862 211.916 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RA5 A 1 260.809 243.630 212.162 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RA5 A 1 261.778 242.804 213.509 1.00 0.00 H Missing atom added: ATOM 23 H4' RA5 A 1 260.987 244.872 214.146 1.00 0.00 H Missing atom added: ATOM 24 H3' RA5 A 1 259.486 242.496 215.431 1.00 0.00 H Missing atom added: ATOM 27 H1' RA5 A 1 257.699 245.715 214.793 1.00 0.00 H Missing atom added: ATOM 25 H2' RA5 A 1 258.380 244.153 216.826 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RA5 A 1 260.455 245.677 216.195 1.00 0.00 H Missing atom added: ATOM 28 H8 RA5 A 1 257.889 242.292 213.228 1.00 0.00 H Missing atom added: ATOM 29 H61 RA5 A 1 253.413 240.655 214.444 1.00 0.00 H Missing atom added: ATOM 30 H62 RA5 A 1 252.165 241.331 215.395 1.00 0.00 H Missing atom added: ATOM 31 H2 RA5 A 1 253.483 245.468 217.306 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 2 265.939 244.975 216.473 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 2 265.297 243.312 216.983 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 2 265.970 244.295 218.819 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 2 262.936 243.838 218.452 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 2 264.162 246.667 220.563 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 2 262.721 244.454 220.796 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 2 265.289 243.811 220.924 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 2 262.728 246.207 217.110 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 2 258.317 248.260 217.844 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 2 257.564 248.885 219.243 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 2 260.273 248.284 223.092 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 3 262.771 242.763 221.673 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 3 261.900 241.190 222.122 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 3 261.162 242.713 223.508 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 3 259.195 241.601 221.400 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 3 258.730 245.051 222.757 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 3 257.449 242.730 222.663 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 3 259.205 242.651 224.647 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 3 260.044 243.470 219.600 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 3 256.405 244.746 216.547 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 3 254.918 245.545 216.806 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 3 254.222 246.465 221.409 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 4 258.584 242.210 225.078 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 4 258.078 241.075 226.452 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 4 257.456 243.393 226.607 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 4 255.133 241.620 226.250 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 4 255.167 245.058 224.563 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 4 253.769 243.645 226.494 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 4 255.852 244.616 227.674 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 4 255.483 241.825 223.041 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 4 249.051 244.155 222.651 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 4 250.616 246.142 225.292 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 4 249.232 245.451 224.655 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 5 255.400 243.624 229.855 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 5 253.892 242.703 230.415 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 5 252.906 243.905 230.650 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 5 252.758 240.927 229.939 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 5 250.192 243.462 228.656 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 5 250.339 241.157 230.213 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 5 250.933 243.094 231.785 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 5 252.898 241.513 227.538 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 5 251.069 238.652 224.248 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 5 249.390 238.943 224.413 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 5 253.088 239.695 225.541 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 6 251.769 243.210 233.377 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 6 250.036 242.925 233.972 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 6 249.516 244.409 234.022 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 6 248.370 241.589 233.656 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 6 246.815 244.657 231.974 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 6 246.170 242.650 233.794 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 6 247.381 244.455 235.154 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 6 248.705 241.790 231.211 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 6 246.025 239.322 228.198 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 6 244.543 240.177 228.253 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 6 248.275 239.780 229.449 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 7 248.992 242.266 236.669 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 7 248.798 243.534 238.007 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 7 250.292 243.994 238.171 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 7 247.482 245.147 238.589 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 7 250.452 247.332 237.559 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 7 248.606 247.056 239.626 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 7 250.477 245.381 240.142 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 7 247.491 245.961 236.252 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 7 244.869 249.688 234.990 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 7 245.763 250.994 235.643 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 7 245.363 247.123 235.043 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 8 250.085 246.456 242.717 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 8 248.790 246.389 244.040 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 8 249.988 248.451 243.726 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 8 247.146 248.672 242.990 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 8 249.781 250.559 240.950 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 8 247.611 251.050 242.602 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 8 249.634 250.661 244.162 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 8 247.858 247.688 239.992 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 8 245.074 253.476 237.606 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 8 247.311 254.544 240.293 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 8 245.919 254.809 239.403 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 9 246.693 251.014 243.979 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 9 246.980 251.811 245.626 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 9 245.455 252.874 244.101 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 9 244.104 251.803 246.488 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 9 242.349 251.640 243.090 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 9 242.065 252.823 245.580 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 9 243.696 254.321 244.249 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 9 243.758 248.952 245.001 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 9 236.995 249.444 245.984 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 9 237.985 252.681 244.602 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 9 236.948 251.801 245.578 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 10 241.483 255.332 247.869 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 10 242.369 256.149 249.275 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 10 240.446 254.797 249.778 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 10 242.948 253.625 250.797 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 10 240.205 251.331 249.424 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 10 241.526 251.892 251.795 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 10 239.645 253.651 251.580 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 10 243.385 252.125 247.964 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 10 243.598 246.166 251.340 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 10 240.635 247.876 252.631 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 10 241.893 246.804 252.893 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 11 240.804 253.384 253.147 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 11 240.815 254.154 254.833 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 11 240.311 252.046 255.129 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 11 243.054 253.034 256.153 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 11 242.598 249.457 255.173 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 11 243.213 250.901 257.312 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 11 240.577 250.863 257.044 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 11 244.156 252.556 253.703 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 11 248.892 251.292 254.122 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 11 249.659 249.939 254.830 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 11 246.516 247.049 256.900 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 12 242.082 251.613 257.520 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 12 242.247 251.223 259.324 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 12 242.761 249.740 259.239 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 12 242.945 252.120 261.162 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 12 245.773 249.565 260.803 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 12 244.014 250.564 262.717 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 12 242.705 248.759 261.450 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 12 244.980 252.891 259.982 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 12 248.219 255.510 262.219 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 12 249.003 254.348 263.202 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 12 246.255 255.218 260.517 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 13 241.563 248.636 263.107 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 13 241.809 249.108 264.883 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 13 242.610 247.854 265.392 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 13 242.320 250.826 266.090 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 13 245.600 248.918 266.600 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 13 243.684 250.321 268.056 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 13 242.758 247.943 267.804 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 13 244.155 251.355 264.515 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 13 246.813 255.217 265.118 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 13 247.820 254.760 266.426 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 13 244.941 253.868 263.890 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 14 240.338 250.070 271.509 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 14 241.150 251.675 271.060 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 14 241.431 252.251 272.496 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 14 242.597 252.472 269.669 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 14 244.778 252.754 272.804 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 14 244.016 254.246 270.578 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 14 242.135 254.555 272.294 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 14 244.081 250.553 270.152 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 14 248.191 250.049 267.869 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 14 249.169 251.234 268.626 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 14 245.701 249.390 268.321 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 15 241.170 256.813 271.209 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 15 241.629 258.050 269.907 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 15 242.182 258.948 271.824 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 15 244.458 258.119 269.904 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 15 245.059 258.211 273.591 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 15 245.939 259.369 271.375 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 15 243.714 260.588 272.140 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 15 244.440 255.599 270.948 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 15 248.934 253.601 270.795 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 15 250.396 254.010 271.576 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 15 249.926 257.937 274.199 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 16 245.395 261.138 271.265 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 16 246.846 261.685 270.250 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 16 247.975 261.653 271.344 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 16 247.726 261.367 268.302 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 16 250.397 259.503 270.315 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 16 250.172 261.383 268.272 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 16 249.962 262.707 270.458 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 16 247.394 258.930 268.578 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 16 248.541 255.931 265.107 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 16 250.250 255.898 265.213 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 16 246.795 257.240 266.550 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 17 252.913 264.974 268.519 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 17 253.117 263.554 267.347 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 17 254.814 263.830 268.986 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 17 253.157 261.389 269.339 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 17 254.521 263.297 272.398 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 17 254.764 260.833 271.142 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 17 256.291 262.504 269.810 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 17 251.351 263.120 271.185 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 17 252.443 259.974 275.185 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 17 249.450 262.067 272.422 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 18 255.798 260.161 269.681 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 18 256.784 259.111 268.516 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 18 256.682 258.455 270.828 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 18 255.297 256.558 269.052 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 18 253.859 257.296 272.524 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 18 254.940 255.203 271.067 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 18 256.942 256.527 272.021 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 18 252.585 258.301 269.324 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 18 249.405 252.690 271.634 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 18 252.497 252.887 273.574 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 18 251.299 251.940 272.890 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 19 258.000 254.038 270.145 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 19 258.749 253.277 268.631 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 19 257.465 251.866 270.094 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 19 256.175 252.256 267.477 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 19 254.021 252.043 270.636 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 19 254.478 250.672 268.272 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 19 256.313 249.905 269.920 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 19 254.719 254.915 268.603 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 19 248.686 252.104 266.975 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 19 250.483 249.493 268.795 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 19 249.358 249.903 267.627 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 20 257.235 248.236 268.119 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 20 257.802 247.499 266.517 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 20 255.955 246.461 267.653 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 20 255.160 247.716 265.112 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 20 252.776 247.832 268.106 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 20 252.933 246.781 265.547 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 20 254.191 245.130 267.085 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 20 254.668 250.515 266.657 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 20 248.218 250.470 264.348 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 20 248.752 247.122 265.714 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 20 247.975 248.105 264.605 1.00 0.00 H Missing atom added: ATOM 23 H5'1 RA3 A 21 253.360 245.200 265.475 1.00 0.00 H Missing atom added: ATOM 24 H5'2 RA3 A 21 253.127 243.634 264.512 1.00 0.00 H Missing atom added: ATOM 25 H4' RA3 A 21 251.147 244.188 265.260 1.00 0.00 H Missing atom added: ATOM 26 H3' RA3 A 21 251.649 244.377 262.217 1.00 0.00 H Missing atom added: ATOM 29 H1' RA3 A 21 249.097 246.577 263.833 1.00 0.00 H Missing atom added: ATOM 27 H2' RA3 A 21 249.244 244.669 261.998 1.00 0.00 H Missing atom added: ATOM 28 HO'2 RA3 A 21 249.158 243.536 264.392 1.00 0.00 H Missing atom added: ATOM 30 H8 RA3 A 21 252.611 246.913 262.517 1.00 0.00 H Missing atom added: ATOM 31 H61 RA3 A 21 251.668 249.638 258.532 1.00 0.00 H Missing atom added: ATOM 32 H62 RA3 A 21 250.206 250.179 257.834 1.00 0.00 H Missing atom added: ATOM 33 H2 RA3 A 21 246.436 248.511 260.184 1.00 0.00 H Missing atom added: ATOM 34 H3T RA3 A 21 250.302 242.565 263.886 1.00 0.00 H Number of atoms: 682 Number of residues: 21 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 736 Number of angles built: 1311 Number of dihedrals built: 1995 Number of impropers built: 146 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 230174 Number of van der Waals pairs: 58642 Number of H-bonds built: 6 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 2 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 2040914543.7965 kcal/mol (2007284452.0243 without restraints) Performing minimization step: 2. Total energy = 1776399201.8197 kcal/mol (1747465984.4150 without restraints) Performing minimization step: 3. Total energy = 1548635618.4365 kcal/mol (1523700415.5485 without restraints) Performing minimization step: 4. Total energy = 1352183342.8897 kcal/mol (1330657523.5212 without restraints) Performing minimization step: 5. Total energy = 1182455700.2605 kcal/mol (1163842512.1077 without restraints) Performing minimization step: 6. Total energy = 1035578368.6262 kcal/mol (1019457799.9095 without restraints) Performing minimization step: 7. Total energy = 908272588.8098 kcal/mol (894288852.9028 without restraints) Performing minimization step: 8. Total energy = 797758510.4045 kcal/mol (785609677.0317 without restraints) Performing minimization step: 9. Total energy = 701675035.3131 kcal/mol (691104422.4133 without restraints) Performing minimization step: 10. Total energy = 618013207.1618 kcal/mol (608802220.0280 without restraints) Performing minimization step: 11. Total energy = 545060746.8306 kcal/mol (537022909.4316 without restraints) Performing minimization step: 12. Total energy = 481355778.7192 kcal/mol (474331749.0992 without restraints) Performing minimization step: 13. Total energy = 425648150.8869 kcal/mol (419501550.5214 without restraints) Performing minimization step: 14. Total energy = 376867042.2883 kcal/mol (371480960.0132 without restraints) Performing minimization step: 15. Total energy = 334093785.4060 kcal/mol (329367841.4911 without restraints) Performing minimization step: 16. Total energy = 296539023.5893 kcal/mol (292386899.8281 without restraints) Performing minimization step: 17. Total energy = 263523477.9187 kcal/mol (259870836.1431 without restraints) Performing minimization step: 18. Total energy = 234461725.2919 kcal/mol (231244450.2312 without restraints) Performing minimization step: 19. Total energy = 208848493.1345 kcal/mol (206011206.5979 without restraints) Performing minimization step: 20. Total energy = 186247061.1212 kcal/mol (183741863.5434 without restraints) Performing minimization step: 21. Total energy = 166279430.0229 kcal/mol (164064832.8689 without restraints) Performing minimization step: 22. Total energy = 148617975.1540 kcal/mol (146657993.8069 without restraints) Performing minimization step: 23. Total energy = 132978349.1499 kcal/mol (131241730.9632 without restraints) Performing minimization step: 24. Total energy = 119113437.8134 kcal/mol (117573004.1916 without restraints) Performing minimization step: 25. Total energy = 106808205.0281 kcal/mol (105440289.8550 without restraints) Performing minimization step: 26. Total energy = 95875289.4694 kcal/mol (94659259.0729 without restraints) Performing minimization step: 27. Total energy = 86151238.0136 kcal/mol (85069080.2400 without restraints) Performing minimization step: 28. Total energy = 77493279.1983 kcal/mol (76529251.1505 without restraints) Performing minimization step: 29. Total energy = 69776555.4365 kcal/mol (68916881.0818 without restraints) Performing minimization step: 30. Total energy = 62891745.4971 kcal/mol (62124355.7332 without restraints) Performing minimization step: 31. Total energy = 56743019.4710 kcal/mol (56057328.3890 without restraints) Performing minimization step: 32. Total energy = 51246277.3939 kcal/mol (50632989.4451 without restraints) Performing minimization step: 33. Total energy = 46327630.2071 kcal/mol (45778573.7914 without restraints) Performing minimization step: 34. Total energy = 41922088.0384 kcal/mol (41430071.7105 without restraints) Performing minimization step: 35. Total energy = 37972426.0836 kcal/mol (37531114.1497 without restraints) Performing minimization step: 36. Total energy = 34428202.8300 kcal/mol (34032007.5873 without restraints) Performing minimization step: 37. Total energy = 31244909.1263 kcal/mol (30888897.4066 without restraints) Performing minimization step: 38. Total energy = 28383229.7789 kcal/mol (28063041.8020 without restraints) Performing minimization step: 39. Total energy = 25808402.0408 kcal/mol (25520180.8734 without restraints) Performing minimization step: 40. Total energy = 23489657.6354 kcal/mol (23229987.7999 without restraints) Performing minimization step: 41. Total energy = 21399736.8856 kcal/mol (21165590.8716 without restraints) Performing minimization step: 42. Total energy = 19514465.1578 kcal/mol (19303156.7670 without restraints) Performing minimization step: 43. Total energy = 17812383.2206 kcal/mol (17621526.8276 without restraints) Performing minimization step: 44. Total energy = 16274424.3079 kcal/mol (16101899.2495 without restraints) Performing minimization step: 45. Total energy = 14883631.6840 kcal/mol (14727551.0974 without restraints) Performing minimization step: 46. Total energy = 13624911.3714 kcal/mol (13483594.8972 without restraints) Performing minimization step: 47. Total energy = 12484815.4400 kcal/mol (12356765.2876 without restraints) Performing minimization step: 48. Total energy = 11451351.8892 kcal/mol (11335231.8268 without restraints) Performing minimization step: 49. Total energy = 10513817.6896 kcal/mol (10408434.5857 without restraints) Performing minimization step: 50. Total energy = 9662652.0218 kcal/mol (9566939.6107 without restraints) Performing minimization step: 51. Total energy = 8889307.1417 kcal/mol (8802311.7321 without restraints) Performing minimization step: 52. Total energy = 8186134.6478 kcal/mol (8107002.5296 without restraints) Performing minimization step: 53. Total energy = 7546285.2191 kcal/mol (7474251.5569 without restraints) Performing minimization step: 54. Total energy = 6963620.1458 kcal/mol (6897999.1738 without restraints) Performing minimization step: 55. Total energy = 6432633.1959 kcal/mol (6372809.5544 without restraints) Performing minimization step: 56. Total energy = 5948381.5464 kcal/mol (5893802.6200 without restraints) Performing minimization step: 57. Total energy = 5506424.6750 kcal/mol (5456593.8108 without restraints) Performing minimization step: 58. Total energy = 5102770.2480 kcal/mol (5057240.7475 without restraints) Performing minimization step: 59. Total energy = 4733826.1606 kcal/mol (4692195.9527 without restraints) Performing minimization step: 60. Total energy = 4396357.9974 kcal/mol (4358264.9110 without restraints) Performing minimization step: 61. Total energy = 4087451.2659 kcal/mol (4052568.8316 without restraints) Performing minimization step: 62. Total energy = 3804477.8441 kcal/mol (3772511.5623 without restraints) Performing minimization step: 63. Total energy = 3545066.1444 kcal/mol (3515750.1662 without restraints) Performing minimization step: 64. Total energy = 3307074.5647 kcal/mol (3280168.7365 without restraints) Performing minimization step: 65. Total energy = 3088567.8444 kcal/mol (3063855.0755 without restraints) Performing minimization step: 66. Total energy = 2887795.9925 kcal/mol (2865079.9076 without restraints) Performing minimization step: 67. Total energy = 2703175.4939 kcal/mol (2682278.3392 without restraints) Performing minimization step: 68. Total energy = 2533272.5356 kcal/mol (2514033.3088 without restraints) Performing minimization step: 69. Total energy = 2376788.0253 kcal/mol (2359060.8051 without restraints) Performing minimization step: 70. Total energy = 2232544.2001 kcal/mol (2216196.6524 without restraints) Performing minimization step: 71. Total energy = 2099472.6506 kcal/mol (2084384.6919 without restraints) Performing minimization step: 72. Total energy = 1976603.6014 kcal/mol (1962666.2026 without restraints) Performing minimization step: 73. Total energy = 1863056.3106 kcal/mol (1850170.4245 without restraints) Performing minimization step: 74. Total energy = 1758030.4654 kcal/mol (1746106.0658 without restraints) Performing minimization step: 75. Total energy = 1660798.4648 kcal/mol (1649753.6839 without restraints) Performing minimization step: 76. Total energy = 1570698.4930 kcal/mol (1560458.8474 without restraints) Performing minimization step: 77. Total energy = 1487128.2984 kcal/mol (1477625.9931 without restraints) Performing minimization step: 78. Total energy = 1409539.6009 kcal/mol (1400712.9037 without restraints) Performing minimization step: 79. Total energy = 1337433.0611 kcal/mol (1329225.7395 without restraints) Performing minimization step: 80. Total energy = 1270353.7496 kcal/mol (1262714.5633 without restraints) Performing minimization step: 81. Total energy = 1207887.0639 kcal/mol (1200769.3079 without restraints) Performing minimization step: 82. Total energy = 1149655.0448 kcal/mol (1143016.1358 without restraints) Performing minimization step: 83. Total energy = 1095313.0490 kcal/mol (1089114.1527 without restraints) Performing minimization step: 84. Total energy = 1044546.7407 kcal/mol (1038752.4339 without restraints) Performing minimization step: 85. Total energy = 997069.3680 kcal/mol (991647.3329 without restraints) Performing minimization step: 86. Total energy = 952619.2941 kcal/mol (947540.0409 without restraints) Performing minimization step: 87. Total energy = 910957.7575 kcal/mol (906194.3723 without restraints) Performing minimization step: 88. Total energy = 871866.8358 kcal/mol (867394.7521 without restraints) Performing minimization step: 89. Total energy = 835147.5942 kcal/mol (830944.3839 without restraints) Performing minimization step: 90. Total energy = 800618.3992 kcal/mol (796663.5828 without restraints) Performing minimization step: 91. Total energy = 768113.3808 kcal/mol (764388.2545 without restraints) Performing minimization step: 92. Total energy = 737481.0309 kcal/mol (733968.5079 without restraints) Performing minimization step: 93. Total energy = 708582.9220 kcal/mol (705267.3889 without restraints) Performing minimization step: 94. Total energy = 681292.5388 kcal/mol (678159.7232 without restraints) Performing minimization step: 95. Total energy = 655494.2100 kcal/mol (652531.0600 without restraints) Performing minimization step: 96. Total energy = 631082.1320 kcal/mol (628276.7065 without restraints) Performing minimization step: 97. Total energy = 607959.4788 kcal/mol (605300.8469 without restraints) Performing minimization step: 98. Total energy = 586037.5881 kcal/mol (583515.7374 without restraints) Performing minimization step: 99. Total energy = 565235.2194 kcal/mol (562840.9723 without restraints) Performing minimization step: 100. Total energy = 545477.8773 kcal/mol (543202.8150 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 101. Total energy = 526697.1955 kcal/mol (524533.5882 without restraints) Performing minimization step: 102. Total energy = 508830.3756 kcal/mol (506771.1199 without restraints) Performing minimization step: 103. Total energy = 491819.6781 kcal/mol (489858.2395 without restraints) Performing minimization step: 104. Total energy = 475611.9584 kcal/mol (473742.3188 without restraints) Performing minimization step: 105. Total energy = 460158.2468 kcal/mol (458374.8581 without restraints) Performing minimization step: 106. Total energy = 445413.3685 kcal/mol (443711.1091 without restraints) Performing minimization step: 107. Total energy = 431335.5973 kcal/mol (429709.7337 without restraints) Performing minimization step: 108. Total energy = 417886.3450 kcal/mol (416332.4969 without restraints) Performing minimization step: 109. Total energy = 405029.8784 kcal/mol (403543.9866 without restraints) Performing minimization step: 110. Total energy = 392733.0635 kcal/mol (391311.3619 without restraints) Performing minimization step: 111. Total energy = 380965.1366 kcal/mol (379604.1260 without restraints) Performing minimization step: 112. Total energy = 369697.4955 kcal/mol (368393.9201 without restraints) Performing minimization step: 113. Total energy = 358903.5112 kcal/mol (357654.3379 without restraints) Performing minimization step: 114. Total energy = 348558.3589 kcal/mol (347360.7583 without restraints) Performing minimization step: 115. Total energy = 338638.8647 kcal/mol (337490.1935 without restraints) Performing minimization step: 116. Total energy = 329123.3671 kcal/mol (328021.1531 without restraints) Performing minimization step: 117. Total energy = 319991.5925 kcal/mol (318933.5202 without restraints) Performing minimization step: 118. Total energy = 311224.5416 kcal/mol (310208.4399 without restraints) Performing minimization step: 119. Total energy = 302804.3879 kcal/mol (301828.2183 without restraints) Performing minimization step: 120. Total energy = 294714.3852 kcal/mol (293776.2316 without restraints) Performing minimization step: 121. Total energy = 286938.7836 kcal/mol (286036.8429 without restraints) Performing minimization step: 122. Total energy = 279462.7533 kcal/mol (278595.3268 without restraints) Performing minimization step: 123. Total energy = 272272.3169 kcal/mol (271437.8026 without restraints) Performing minimization step: 124. Total energy = 265354.2857 kcal/mol (264551.1712 without restraints) Performing minimization step: 125. Total energy = 258696.2033 kcal/mol (257923.0597 without restraints) Performing minimization step: 126. Total energy = 252286.2939 kcal/mol (251541.7696 without restraints) Performing minimization step: 127. Total energy = 246113.4147 kcal/mol (245396.2300 without restraints) Performing minimization step: 128. Total energy = 240167.0130 kcal/mol (239475.9557 without restraints) Performing minimization step: 129. Total energy = 234437.0867 kcal/mol (233771.0074 without restraints) Performing minimization step: 130. Total energy = 228914.1484 kcal/mol (228271.9563 without restraints) Performing minimization step: 131. Total energy = 223589.1922 kcal/mol (222969.8515 without restraints) Performing minimization step: 132. Total energy = 218453.6633 kcal/mol (217856.1898 without restraints) Performing minimization step: 133. Total energy = 213499.4302 kcal/mol (212922.8880 without restraints) Performing minimization step: 134. Total energy = 208718.7587 kcal/mol (208162.2576 without restraints) Performing minimization step: 135. Total energy = 204104.2888 kcal/mol (203566.9812 without restraints) Performing minimization step: 136. Total energy = 199649.0124 kcal/mol (199130.0911 without restraints) Performing minimization step: 137. Total energy = 195346.2529 kcal/mol (194844.9487 without restraints) Performing minimization step: 138. Total energy = 191189.6473 kcal/mol (190705.2268 without restraints) Performing minimization step: 139. Total energy = 187173.1277 kcal/mol (186704.8917 without restraints) Performing minimization step: 140. Total energy = 183290.9064 kcal/mol (182838.1875 without restraints) Performing minimization step: 141. Total energy = 179537.4598 kcal/mol (179099.6212 without restraints) Performing minimization step: 142. Total energy = 175907.5153 kcal/mol (175483.9489 without restraints) Performing minimization step: 143. Total energy = 172396.0378 kcal/mol (171986.1628 without restraints) Performing minimization step: 144. Total energy = 168998.2179 kcal/mol (168601.4795 without restraints) Performing minimization step: 145. Total energy = 165709.4601 kcal/mol (165325.3281 without restraints) Performing minimization step: 146. Total energy = 162525.3727 kcal/mol (162153.3403 without restraints) Performing minimization step: 147. Total energy = 159441.7574 kcal/mol (159081.3402 without restraints) Performing minimization step: 148. Total energy = 156454.6004 kcal/mol (156105.3351 without restraints) Performing minimization step: 149. Total energy = 153560.0632 kcal/mol (153221.5067 without restraints) Performing minimization step: 150. Total energy = 150754.4743 kcal/mol (150426.2030 without restraints) Performing minimization step: 151. Total energy = 148034.3221 kcal/mol (147715.9304 without restraints) Performing minimization step: 152. Total energy = 145396.2466 kcal/mol (145087.3467 without restraints) Performing minimization step: 153. Total energy = 142837.0332 kcal/mol (142537.2539 without restraints) Performing minimization step: 154. Total energy = 140353.6057 kcal/mol (140062.5919 without restraints) Performing minimization step: 155. Total energy = 137943.0204 kcal/mol (137660.4323 without restraints) Performing minimization step: 156. Total energy = 135602.4600 kcal/mol (135327.9722 without restraints) Performing minimization step: 157. Total energy = 133329.2281 kcal/mol (133062.5292 without restraints) Performing minimization step: 158. Total energy = 131120.7438 kcal/mol (130861.5359 without restraints) Performing minimization step: 159. Total energy = 128974.5367 kcal/mol (128722.5345 without restraints) Performing minimization step: 160. Total energy = 126888.2422 kcal/mol (126643.1727 without restraints) Performing minimization step: 161. Total energy = 124859.5968 kcal/mol (124621.1985 without restraints) Performing minimization step: 162. Total energy = 122886.4337 kcal/mol (122654.4566 without restraints) Performing minimization step: 163. Total energy = 120966.6788 kcal/mol (120740.8832 without restraints) Performing minimization step: 164. Total energy = 119098.3465 kcal/mol (118878.5031 without restraints) Performing minimization step: 165. Total energy = 117279.5358 kcal/mol (117065.4253 without restraints) Performing minimization step: 166. Total energy = 115508.4273 kcal/mol (115299.8395 without restraints) Performing minimization step: 167. Total energy = 113783.2789 kcal/mol (113580.0126 without restraints) Performing minimization step: 168. Total energy = 112102.4229 kcal/mol (111904.2854 without restraints) Performing minimization step: 169. Total energy = 110464.2626 kcal/mol (110271.0697 without restraints) Performing minimization step: 170. Total energy = 108867.2694 kcal/mol (108678.8446 without restraints) Performing minimization step: 171. Total energy = 107309.9799 kcal/mol (107126.1541 without restraints) Performing minimization step: 172. Total energy = 105790.9927 kcal/mol (105611.6042 without restraints) Performing minimization step: 173. Total energy = 104308.9662 kcal/mol (104133.8599 without restraints) Performing minimization step: 174. Total energy = 102862.6156 kcal/mol (102691.6432 without restraints) Performing minimization step: 175. Total energy = 101450.7104 kcal/mol (101283.7298 without restraints) Performing minimization step: 176. Total energy = 100072.0725 kcal/mol (99908.9476 without restraints) Performing minimization step: 177. Total energy = 98725.5732 kcal/mol (98566.1736 without restraints) Performing minimization step: 178. Total energy = 97410.1315 kcal/mol (97254.3325 without restraints) Performing minimization step: 179. Total energy = 96124.7119 kcal/mol (95972.3938 without restraints) Performing minimization step: 180. Total energy = 94868.3222 kcal/mol (94719.3703 without restraints) Performing minimization step: 181. Total energy = 93640.0116 kcal/mol (93494.3162 without restraints) Performing minimization step: 182. Total energy = 92438.8690 kcal/mol (92296.3248 without restraints) Performing minimization step: 183. Total energy = 91264.0214 kcal/mol (91124.5274 without restraints) Performing minimization step: 184. Total energy = 90114.6310 kcal/mol (89978.0906 without restraints) Performing minimization step: 185. Total energy = 88989.8953 kcal/mol (88856.2157 without restraints) Performing minimization step: 186. Total energy = 87889.0445 kcal/mol (87758.1366 without restraints) Performing minimization step: 187. Total energy = 86811.3400 kcal/mol (86683.1186 without restraints) Performing minimization step: 188. Total energy = 85756.0734 kcal/mol (85630.4566 without restraints) Performing minimization step: 189. Total energy = 84722.5648 kcal/mol (84599.4739 without restraints) Performing minimization step: 190. Total energy = 83710.1614 kcal/mol (83589.5211 without restraints) Performing minimization step: 191. Total energy = 82718.2368 kcal/mol (82599.9745 without restraints) Performing minimization step: 192. Total energy = 81746.1891 kcal/mol (81630.2352 without restraints) Performing minimization step: 193. Total energy = 80793.4403 kcal/mol (80679.7280 without restraints) Performing minimization step: 194. Total energy = 79859.4348 kcal/mol (79747.8999 without restraints) Performing minimization step: 195. Total energy = 78943.6389 kcal/mol (78834.2196 without restraints) Performing minimization step: 196. Total energy = 78045.5391 kcal/mol (77938.1760 without restraints) Performing minimization step: 197. Total energy = 77164.6419 kcal/mol (77059.2777 without restraints) Performing minimization step: 198. Total energy = 76300.4722 kcal/mol (76197.0521 without restraints) Performing minimization step: 199. Total energy = 75452.5729 kcal/mol (75351.0440 without restraints) Performing minimization step: 200. Total energy = 74620.5042 kcal/mol (74520.8155 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 201. Total energy = 73803.8422 kcal/mol (73705.9447 without restraints) Performing minimization step: 202. Total energy = 73002.1790 kcal/mol (72906.0255 without restraints) Performing minimization step: 203. Total energy = 72215.1211 kcal/mol (72120.6658 without restraints) Performing minimization step: 204. Total energy = 71442.2893 kcal/mol (71349.4884 without restraints) Performing minimization step: 205. Total energy = 70683.3181 kcal/mol (70592.1293 without restraints) Performing minimization step: 206. Total energy = 69937.8549 kcal/mol (69848.2373 without restraints) Performing minimization step: 207. Total energy = 69205.5594 kcal/mol (69117.4735 without restraints) Performing minimization step: 208. Total energy = 68486.1031 kcal/mol (68399.5108 without restraints) Performing minimization step: 209. Total energy = 67779.1687 kcal/mol (67694.0334 without restraints) Performing minimization step: 210. Total energy = 67084.4501 kcal/mol (67000.7361 without restraints) Performing minimization step: 211. Total energy = 66401.6510 kcal/mol (66319.3240 without restraints) Performing minimization step: 212. Total energy = 65730.4853 kcal/mol (65649.5121 without restraints) Performing minimization step: 213. Total energy = 65070.6763 kcal/mol (64991.0248 without restraints) Performing minimization step: 214. Total energy = 64421.9563 kcal/mol (64343.5955 without restraints) Performing minimization step: 215. Total energy = 63784.0663 kcal/mol (63706.9661 without restraints) Performing minimization step: 216. Total energy = 63156.7556 kcal/mol (63080.8869 without restraints) Performing minimization step: 217. Total energy = 62539.7815 kcal/mol (62465.1161 without restraints) Performing minimization step: 218. Total energy = 61932.9088 kcal/mol (61859.4194 without restraints) Performing minimization step: 219. Total energy = 61335.9096 kcal/mol (61263.5698 without restraints) Performing minimization step: 220. Total energy = 60748.5632 kcal/mol (60677.3473 without restraints) Performing minimization step: 221. Total energy = 60170.6555 kcal/mol (60100.5386 without restraints) Performing minimization step: 222. Total energy = 59601.9787 kcal/mol (59532.9367 without restraints) Performing minimization step: 223. Total energy = 59042.3316 kcal/mol (58974.3411 without restraints) Performing minimization step: 224. Total energy = 58491.5185 kcal/mol (58424.5568 without restraints) Performing minimization step: 225. Total energy = 57949.3496 kcal/mol (57883.3946 without restraints) Performing minimization step: 226. Total energy = 57415.6408 kcal/mol (57350.6711 without restraints) Performing minimization step: 227. Total energy = 56890.2129 kcal/mol (56826.2077 without restraints) Performing minimization step: 228. Total energy = 56372.8920 kcal/mol (56309.8311 without restraints) Performing minimization step: 229. Total energy = 55863.5093 kcal/mol (55801.3730 without restraints) Performing minimization step: 230. Total energy = 55361.9001 kcal/mol (55300.6692 without restraints) Performing minimization step: 231. Total energy = 54867.9047 kcal/mol (54807.5607 without restraints) Performing minimization step: 232. Total energy = 54381.3676 kcal/mol (54321.8924 without restraints) Performing minimization step: 233. Total energy = 53902.1375 kcal/mol (53843.5136 without restraints) Performing minimization step: 234. Total energy = 53430.0673 kcal/mol (53372.2774 without restraints) Performing minimization step: 235. Total energy = 52965.0139 kcal/mol (52908.0414 without restraints) Performing minimization step: 236. Total energy = 52506.8377 kcal/mol (52450.6663 without restraints) Performing minimization step: 237. Total energy = 52055.4026 kcal/mol (52000.0167 without restraints) Performing minimization step: 238. Total energy = 51610.5765 kcal/mol (51555.9604 without restraints) Performing minimization step: 239. Total energy = 51172.2301 kcal/mol (51118.3690 without restraints) Performing minimization step: 240. Total energy = 50740.2380 kcal/mol (50687.1172 without restraints) Performing minimization step: 241. Total energy = 50314.4774 kcal/mol (50262.0826 without restraints) Performing minimization step: 242. Total energy = 49894.8290 kcal/mol (49843.1463 without restraints) Performing minimization step: 243. Total energy = 49481.1761 kcal/mol (49430.1919 without restraints) Performing minimization step: 244. Total energy = 49073.4052 kcal/mol (49023.1063 without restraints) Performing minimization step: 245. Total energy = 48671.4052 kcal/mol (48621.7787 without restraints) Performing minimization step: 246. Total energy = 48275.0681 kcal/mol (48226.1013 without restraints) Performing minimization step: 247. Total energy = 47884.2881 kcal/mol (47835.9688 without restraints) Performing minimization step: 248. Total energy = 47498.9621 kcal/mol (47451.2783 without restraints) Performing minimization step: 249. Total energy = 47118.9896 kcal/mol (47071.9294 without restraints) Performing minimization step: 250. Total energy = 46744.2720 kcal/mol (46697.8241 without restraints) Performing minimization step: 251. Total energy = 46374.7134 kcal/mol (46328.8666 without restraints) Performing minimization step: 252. Total energy = 46010.2203 kcal/mol (45964.9635 without restraints) Performing minimization step: 253. Total energy = 45650.7004 kcal/mol (45606.0231 without restraints) Performing minimization step: 254. Total energy = 45296.0646 kcal/mol (45251.9562 without restraints) Performing minimization step: 255. Total energy = 44946.2251 kcal/mol (44902.6755 without restraints) Performing minimization step: 256. Total energy = 44601.0964 kcal/mol (44558.0957 without restraints) Performing minimization step: 257. Total energy = 44260.5949 kcal/mol (44218.1332 without restraints) Performing minimization step: 258. Total energy = 43924.6388 kcal/mol (43882.7066 without restraints) Performing minimization step: 259. Total energy = 43593.1480 kcal/mol (43551.7360 without restraints) Performing minimization step: 260. Total energy = 43266.0440 kcal/mol (43225.1431 without restraints) Performing minimization step: 261. Total energy = 42943.2508 kcal/mol (42902.8520 without restraints) Performing minimization step: 262. Total energy = 42624.6932 kcal/mol (42584.7878 without restraints) Performing minimization step: 263. Total energy = 42310.2979 kcal/mol (42270.8774 without restraints) Performing minimization step: 264. Total energy = 41999.9933 kcal/mol (41961.0493 without restraints) Performing minimization step: 265. Total energy = 41693.7092 kcal/mol (41655.2334 without restraints) Performing minimization step: 266. Total energy = 41391.3768 kcal/mol (41353.3613 without restraints) Performing minimization step: 267. Total energy = 41092.9288 kcal/mol (41055.3658 without restraints) Performing minimization step: 268. Total energy = 40798.2996 kcal/mol (40761.1813 without restraints) Performing minimization step: 269. Total energy = 40507.4245 kcal/mol (40470.7435 without restraints) Performing minimization step: 270. Total energy = 40220.2404 kcal/mol (40183.9893 without restraints) Performing minimization step: 271. Total energy = 39936.6855 kcal/mol (39900.8570 without restraints) Performing minimization step: 272. Total energy = 39656.6993 kcal/mol (39621.2864 without restraints) Performing minimization step: 273. Total energy = 39380.2223 kcal/mol (39345.2181 without restraints) Performing minimization step: 274. Total energy = 39107.1965 kcal/mol (39072.5942 without restraints) Performing minimization step: 275. Total energy = 38837.5650 kcal/mol (38803.3579 without restraints) Performing minimization step: 276. Total energy = 38571.2719 kcal/mol (38537.4535 without restraints) Performing minimization step: 277. Total energy = 38308.2625 kcal/mol (38274.8265 without restraints) Performing minimization step: 278. Total energy = 38048.4832 kcal/mol (38015.4233 without restraints) Performing minimization step: 279. Total energy = 37791.8816 kcal/mol (37759.1917 without restraints) Performing minimization step: 280. Total energy = 37538.4061 kcal/mol (37506.0801 without restraints) Performing minimization step: 281. Total energy = 37288.0062 kcal/mol (37256.0384 without restraints) Performing minimization step: 282. Total energy = 37040.6325 kcal/mol (37009.0170 without restraints) Performing minimization step: 283. Total energy = 36796.2365 kcal/mol (36764.9676 without restraints) Performing minimization step: 284. Total energy = 36554.7705 kcal/mol (36523.8427 without restraints) Performing minimization step: 285. Total energy = 36316.1880 kcal/mol (36285.5959 without restraints) Performing minimization step: 286. Total energy = 36080.4432 kcal/mol (36050.1813 without restraints) Performing minimization step: 287. Total energy = 35847.4912 kcal/mol (35817.5544 without restraints) Performing minimization step: 288. Total energy = 35617.2880 kcal/mol (35587.6711 without restraints) Performing minimization step: 289. Total energy = 35389.7904 kcal/mol (35360.4884 without restraints) Performing minimization step: 290. Total energy = 35164.9561 kcal/mol (35135.9641 without restraints) Performing minimization step: 291. Total energy = 34942.7436 kcal/mol (34914.0567 without restraints) Performing minimization step: 292. Total energy = 34723.1121 kcal/mol (34694.7255 without restraints) Performing minimization step: 293. Total energy = 34506.0215 kcal/mol (34477.9307 without restraints) Performing minimization step: 294. Total energy = 34291.4328 kcal/mol (34263.6330 without restraints) Performing minimization step: 295. Total energy = 34079.3073 kcal/mol (34051.7942 without restraints) Performing minimization step: 296. Total energy = 33869.6074 kcal/mol (33842.3764 without restraints) Performing minimization step: 297. Total energy = 33662.2958 kcal/mol (33635.3426 without restraints) Performing minimization step: 298. Total energy = 33457.3362 kcal/mol (33430.6567 without restraints) Performing minimization step: 299. Total energy = 33254.6929 kcal/mol (33228.2828 without restraints) Performing minimization step: 300. Total energy = 33054.3308 kcal/mol (33028.1861 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 301. Total energy = 32856.2155 kcal/mol (32830.3321 without restraints) Performing minimization step: 302. Total energy = 32660.3132 kcal/mol (32634.6872 without restraints) Performing minimization step: 303. Total energy = 32466.5907 kcal/mol (32441.2182 without restraints) Performing minimization step: 304. Total energy = 32275.0154 kcal/mol (32249.8927 without restraints) Performing minimization step: 305. Total energy = 32085.5555 kcal/mol (32060.6787 without restraints) Performing minimization step: 306. Total energy = 31898.1793 kcal/mol (31873.5449 without restraints) Performing minimization step: 307. Total energy = 31712.8562 kcal/mol (31688.4605 without restraints) Performing minimization step: 308. Total energy = 31529.5558 kcal/mol (31505.3953 without restraints) Performing minimization step: 309. Total energy = 31348.2484 kcal/mol (31324.3197 without restraints) Performing minimization step: 310. Total energy = 31168.9048 kcal/mol (31145.2043 without restraints) Performing minimization step: 311. Total energy = 30991.4963 kcal/mol (30968.0208 without restraints) Performing minimization step: 312. Total energy = 30815.9947 kcal/mol (30792.7408 without restraints) Performing minimization step: 313. Total energy = 30642.3723 kcal/mol (30619.3369 without restraints) Performing minimization step: 314. Total energy = 30470.6020 kcal/mol (30447.7818 without restraints) Performing minimization step: 315. Total energy = 30300.6570 kcal/mol (30278.0490 without restraints) Performing minimization step: 316. Total energy = 30132.5110 kcal/mol (30110.1121 without restraints) Performing minimization step: 317. Total energy = 29966.1384 kcal/mol (29943.9456 without restraints) Performing minimization step: 318. Total energy = 29801.5140 kcal/mol (29779.5243 without restraints) Performing minimization step: 319. Total energy = 29638.6123 kcal/mol (29616.8228 without restraints) Performing minimization step: 320. Total energy = 29477.4094 kcal/mol (29455.8172 without restraints) Performing minimization step: 321. Total energy = 29317.8810 kcal/mol (29296.4835 without restraints) Performing minimization step: 322. Total energy = 29160.0037 kcal/mol (29138.7979 without restraints) Performing minimization step: 323. Total energy = 29003.7542 kcal/mol (28982.7375 without restraints) Performing minimization step: 324. Total energy = 28849.1097 kcal/mol (28828.2796 without restraints) Performing minimization step: 325. Total energy = 28696.0478 kcal/mol (28675.4013 without restraints) Performing minimization step: 326. Total energy = 28544.5463 kcal/mol (28524.0811 without restraints) Performing minimization step: 327. Total energy = 28394.5836 kcal/mol (28374.2972 without restraints) Performing minimization step: 328. Total energy = 28246.1386 kcal/mol (28226.0283 without restraints) Performing minimization step: 329. Total energy = 28099.1902 kcal/mol (28079.2537 without restraints) Performing minimization step: 330. Total energy = 27953.7178 kcal/mol (27933.9528 without restraints) Performing minimization step: 331. Total energy = 27809.7014 kcal/mol (27790.1053 without restraints) Performing minimization step: 332. Total energy = 27667.1209 kcal/mol (27647.6915 without restraints) Performing minimization step: 333. Total energy = 27525.9568 kcal/mol (27506.6919 without restraints) Performing minimization step: 334. Total energy = 27386.1899 kcal/mol (27367.0872 without restraints) Performing minimization step: 335. Total energy = 27247.8013 kcal/mol (27228.8586 without restraints) Performing minimization step: 336. Total energy = 27110.7725 kcal/mol (27091.9876 without restraints) Performing minimization step: 337. Total energy = 26975.0851 kcal/mol (26956.4559 without restraints) Performing minimization step: 338. Total energy = 26840.7213 kcal/mol (26822.2456 without restraints) Performing minimization step: 339. Total energy = 26707.6636 kcal/mol (26689.3395 without restraints) Performing minimization step: 340. Total energy = 26575.8940 kcal/mol (26557.7194 without restraints) Performing minimization step: 341. Total energy = 26445.3957 kcal/mol (26427.3686 without restraints) Performing minimization step: 342. Total energy = 26316.1520 kcal/mol (26298.2704 without restraints) Performing minimization step: 343. Total energy = 26188.1462 kcal/mol (26170.4083 without restraints) Performing minimization step: 344. Total energy = 26061.3622 kcal/mol (26043.7660 without restraints) Performing minimization step: 345. Total energy = 25935.7840 kcal/mol (25918.3276 without restraints) Performing minimization step: 346. Total energy = 25811.3957 kcal/mol (25794.0773 without restraints) Performing minimization step: 347. Total energy = 25688.1817 kcal/mol (25670.9996 without restraints) Performing minimization step: 348. Total energy = 25566.1270 kcal/mol (25549.0793 without restraints) Performing minimization step: 349. Total energy = 25445.2168 kcal/mol (25428.3017 without restraints) Performing minimization step: 350. Total energy = 25325.4362 kcal/mol (25308.6521 without restraints) Performing minimization step: 351. Total energy = 25206.7707 kcal/mol (25190.1158 without restraints) Performing minimization step: 352. Total energy = 25089.2059 kcal/mol (25072.6787 without restraints) Performing minimization step: 353. Total energy = 24972.7279 kcal/mol (24956.3266 without restraints) Performing minimization step: 354. Total energy = 24857.3227 kcal/mol (24841.0458 without restraints) Performing minimization step: 355. Total energy = 24742.9769 kcal/mol (24726.8227 without restraints) Performing minimization step: 356. Total energy = 24629.6770 kcal/mol (24613.6440 without restraints) Performing minimization step: 357. Total energy = 24517.4098 kcal/mol (24501.4966 without restraints) Performing minimization step: 358. Total energy = 24406.1625 kcal/mol (24390.3674 without restraints) Performing minimization step: 359. Total energy = 24295.9221 kcal/mol (24280.2437 without restraints) Performing minimization step: 360. Total energy = 24186.6763 kcal/mol (24171.1130 without restraints) Performing minimization step: 361. Total energy = 24078.4125 kcal/mol (24062.9630 without restraints) Performing minimization step: 362. Total energy = 23971.1186 kcal/mol (23955.7815 without restraints) Performing minimization step: 363. Total energy = 23864.7827 kcal/mol (23849.5566 without restraints) Performing minimization step: 364. Total energy = 23759.3930 kcal/mol (23744.2764 without restraints) Performing minimization step: 365. Total energy = 23654.9377 kcal/mol (23639.9292 without restraints) Performing minimization step: 366. Total energy = 23551.4054 kcal/mol (23536.5040 without restraints) Performing minimization step: 367. Total energy = 23448.7852 kcal/mol (23433.9893 without restraints) Performing minimization step: 368. Total energy = 23347.0657 kcal/mol (23332.3741 without restraints) Performing minimization step: 369. Total energy = 23246.2361 kcal/mol (23231.6475 without restraints) Performing minimization step: 370. Total energy = 23146.2856 kcal/mol (23131.7987 without restraints) Performing minimization step: 371. Total energy = 23047.2036 kcal/mol (23032.8173 without restraints) Performing minimization step: 372. Total energy = 22948.9798 kcal/mol (22934.6927 without restraints) Performing minimization step: 373. Total energy = 22851.6038 kcal/mol (22837.4149 without restraints) Performing minimization step: 374. Total energy = 22755.0655 kcal/mol (22740.9735 without restraints) Performing minimization step: 375. Total energy = 22659.3550 kcal/mol (22645.3588 without restraints) Performing minimization step: 376. Total energy = 22564.4625 kcal/mol (22550.5609 without restraints) Performing minimization step: 377. Total energy = 22470.3783 kcal/mol (22456.5702 without restraints) Performing minimization step: 378. Total energy = 22377.0929 kcal/mol (22363.3772 without restraints) Performing minimization step: 379. Total energy = 22284.5970 kcal/mol (22270.9726 without restraints) Performing minimization step: 380. Total energy = 22192.8813 kcal/mol (22179.3471 without restraints) Performing minimization step: 381. Total energy = 22101.9366 kcal/mol (22088.4917 without restraints) Performing minimization step: 382. Total energy = 22011.7542 kcal/mol (21998.3973 without restraints) Performing minimization step: 383. Total energy = 21922.3250 kcal/mol (21909.0553 without restraints) Performing minimization step: 384. Total energy = 21833.6405 kcal/mol (21820.4568 without restraints) Performing minimization step: 385. Total energy = 21745.6920 kcal/mol (21732.5934 without restraints) Performing minimization step: 386. Total energy = 21658.4712 kcal/mol (21645.4567 without restraints) Performing minimization step: 387. Total energy = 21571.9696 kcal/mol (21559.0382 without restraints) Performing minimization step: 388. Total energy = 21486.1791 kcal/mol (21473.3300 without restraints) Performing minimization step: 389. Total energy = 21401.0917 kcal/mol (21388.3237 without restraints) Performing minimization step: 390. Total energy = 21316.6993 kcal/mol (21304.0116 without restraints) Performing minimization step: 391. Total energy = 21232.9940 kcal/mol (21220.3858 without restraints) Performing minimization step: 392. Total energy = 21149.9683 kcal/mol (21137.4385 without restraints) Performing minimization step: 393. Total energy = 21067.6144 kcal/mol (21055.1622 without restraints) Performing minimization step: 394. Total energy = 20985.9248 kcal/mol (20973.5493 without restraints) Performing minimization step: 395. Total energy = 20904.8920 kcal/mol (20892.5925 without restraints) Performing minimization step: 396. Total energy = 20824.5089 kcal/mol (20812.2844 without restraints) Performing minimization step: 397. Total energy = 20744.7682 kcal/mol (20732.6178 without restraints) Performing minimization step: 398. Total energy = 20665.6627 kcal/mol (20653.5857 without restraints) Performing minimization step: 399. Total energy = 20587.1856 kcal/mol (20575.1811 without restraints) Performing minimization step: 400. Total energy = 20509.3298 kcal/mol (20497.3971 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 401. Total energy = 20432.0887 kcal/mol (20420.2269 without restraints) Performing minimization step: 402. Total energy = 20355.4554 kcal/mol (20343.6637 without restraints) Performing minimization step: 403. Total energy = 20279.4234 kcal/mol (20267.7011 without restraints) Performing minimization step: 404. Total energy = 20203.9861 kcal/mol (20192.3324 without restraints) Performing minimization step: 405. Total energy = 20129.1371 kcal/mol (20117.5513 without restraints) Performing minimization step: 406. Total energy = 20054.8701 kcal/mol (20043.3514 without restraints) Performing minimization step: 407. Total energy = 19981.1787 kcal/mol (19969.7265 without restraints) Performing minimization step: 408. Total energy = 19908.0569 kcal/mol (19896.6704 without restraints) Performing minimization step: 409. Total energy = 19835.4988 kcal/mol (19824.1772 without restraints) Performing minimization step: 410. Total energy = 19763.4978 kcal/mol (19752.2405 without restraints) Performing minimization step: 411. Total energy = 19692.0483 kcal/mol (19680.8547 without restraints) Performing minimization step: 412. Total energy = 19621.1445 kcal/mol (19610.0138 without restraints) Performing minimization step: 413. Total energy = 19550.7806 kcal/mol (19539.7121 without restraints) Performing minimization step: 414. Total energy = 19480.9509 kcal/mol (19469.9440 without restraints) Performing minimization step: 415. Total energy = 19411.6498 kcal/mol (19400.7038 without restraints) Performing minimization step: 416. Total energy = 19342.8716 kcal/mol (19331.9858 without restraints) Performing minimization step: 417. Total energy = 19274.6110 kcal/mol (19263.7850 without restraints) Performing minimization step: 418. Total energy = 19206.8627 kcal/mol (19196.0957 without restraints) Performing minimization step: 419. Total energy = 19139.6213 kcal/mol (19128.9127 without restraints) Performing minimization step: 420. Total energy = 19072.8816 kcal/mol (19062.2308 without restraints) Performing minimization step: 421. Total energy = 19006.6382 kcal/mol (18996.0446 without restraints) Performing minimization step: 422. Total energy = 18940.8862 kcal/mol (18930.3492 without restraints) Performing minimization step: 423. Total energy = 18875.6205 kcal/mol (18865.1395 without restraints) Performing minimization step: 424. Total energy = 18810.8361 kcal/mol (18800.4105 without restraints) Performing minimization step: 425. Total energy = 18746.5280 kcal/mol (18736.1573 without restraints) Performing minimization step: 426. Total energy = 18682.6915 kcal/mol (18672.3751 without restraints) Performing minimization step: 427. Total energy = 18619.3218 kcal/mol (18609.0591 without restraints) Performing minimization step: 428. Total energy = 18556.4141 kcal/mol (18546.2046 without restraints) Performing minimization step: 429. Total energy = 18493.9637 kcal/mol (18483.8068 without restraints) Performing minimization step: 430. Total energy = 18431.9660 kcal/mol (18421.8613 without restraints) Performing minimization step: 431. Total energy = 18370.4166 kcal/mol (18360.3634 without restraints) Performing minimization step: 432. Total energy = 18309.3108 kcal/mol (18299.3087 without restraints) Performing minimization step: 433. Total energy = 18248.6443 kcal/mol (18238.6928 without restraints) Performing minimization step: 434. Total energy = 18188.4127 kcal/mol (18178.5112 without restraints) Performing minimization step: 435. Total energy = 18128.6116 kcal/mol (18118.7596 without restraints) Performing minimization step: 436. Total energy = 18069.2369 kcal/mol (18059.4339 without restraints) Performing minimization step: 437. Total energy = 18010.2842 kcal/mol (18000.5298 without restraints) Performing minimization step: 438. Total energy = 17951.7494 kcal/mol (17942.0430 without restraints) Performing minimization step: 439. Total energy = 17893.6284 kcal/mol (17883.9696 without restraints) Performing minimization step: 440. Total energy = 17835.9171 kcal/mol (17826.3054 without restraints) Performing minimization step: 441. Total energy = 17778.6115 kcal/mol (17769.0465 without restraints) Performing minimization step: 442. Total energy = 17721.7077 kcal/mol (17712.1889 without restraints) Performing minimization step: 443. Total energy = 17665.2018 kcal/mol (17655.7287 without restraints) Performing minimization step: 444. Total energy = 17609.0898 kcal/mol (17599.6620 without restraints) Performing minimization step: 445. Total energy = 17553.3679 kcal/mol (17543.9850 without restraints) Performing minimization step: 446. Total energy = 17498.0325 kcal/mol (17488.6939 without restraints) Performing minimization step: 447. Total energy = 17443.0796 kcal/mol (17433.7851 without restraints) Performing minimization step: 448. Total energy = 17388.5058 kcal/mol (17379.2548 without restraints) Performing minimization step: 449. Total energy = 17334.3073 kcal/mol (17325.0994 without restraints) Performing minimization step: 450. Total energy = 17280.4805 kcal/mol (17271.3153 without restraints) Performing minimization step: 451. Total energy = 17227.0219 kcal/mol (17217.8990 without restraints) Performing minimization step: 452. Total energy = 17173.9280 kcal/mol (17164.8469 without restraints) Performing minimization step: 453. Total energy = 17121.1952 kcal/mol (17112.1557 without restraints) Performing minimization step: 454. Total energy = 17068.8203 kcal/mol (17059.8218 without restraints) Performing minimization step: 455. Total energy = 17016.7997 kcal/mol (17007.8419 without restraints) Performing minimization step: 456. Total energy = 16965.1302 kcal/mol (16956.2127 without restraints) Performing minimization step: 457. Total energy = 16913.8084 kcal/mol (16904.9308 without restraints) Performing minimization step: 458. Total energy = 16862.8310 kcal/mol (16853.9930 without restraints) Performing minimization step: 459. Total energy = 16812.1949 kcal/mol (16803.3960 without restraints) Performing minimization step: 460. Total energy = 16761.8968 kcal/mol (16753.1367 without restraints) Performing minimization step: 461. Total energy = 16711.9336 kcal/mol (16703.2119 without restraints) Performing minimization step: 462. Total energy = 16662.3021 kcal/mol (16653.6185 without restraints) Performing minimization step: 463. Total energy = 16612.9993 kcal/mol (16604.3534 without restraints) Performing minimization step: 464. Total energy = 16564.0221 kcal/mol (16555.4136 without restraints) Performing minimization step: 465. Total energy = 16515.3675 kcal/mol (16506.7960 without restraints) Performing minimization step: 466. Total energy = 16467.0325 kcal/mol (16458.4977 without restraints) Performing minimization step: 467. Total energy = 16419.0142 kcal/mol (16410.5157 without restraints) Performing minimization step: 468. Total energy = 16371.3099 kcal/mol (16362.8473 without restraints) Performing minimization step: 469. Total energy = 16323.9161 kcal/mol (16315.4893 without restraints) Performing minimization step: 470. Total energy = 16276.8305 kcal/mol (16268.4389 without restraints) Performing minimization step: 471. Total energy = 16230.0501 kcal/mol (16221.6935 without restraints) Performing minimization step: 472. Total energy = 16183.5720 kcal/mol (16175.2501 without restraints) Performing minimization step: 473. Total energy = 16137.3937 kcal/mol (16129.1061 without restraints) Performing minimization step: 474. Total energy = 16091.5123 kcal/mol (16083.2588 without restraints) Performing minimization step: 475. Total energy = 16045.9251 kcal/mol (16037.7053 without restraints) Performing minimization step: 476. Total energy = 16000.6298 kcal/mol (15992.4434 without restraints) Performing minimization step: 477. Total energy = 15955.6231 kcal/mol (15947.4699 without restraints) Performing minimization step: 478. Total energy = 15910.9029 kcal/mol (15902.7825 without restraints) Performing minimization step: 479. Total energy = 15866.4662 kcal/mol (15858.3782 without restraints) Performing minimization step: 480. Total energy = 15822.3109 kcal/mol (15814.2551 without restraints) Performing minimization step: 481. Total energy = 15778.4343 kcal/mol (15770.4105 without restraints) Performing minimization step: 482. Total energy = 15734.8339 kcal/mol (15726.8417 without restraints) Performing minimization step: 483. Total energy = 15691.5072 kcal/mol (15683.5464 without restraints) Performing minimization step: 484. Total energy = 15648.4518 kcal/mol (15640.5221 without restraints) Performing minimization step: 485. Total energy = 15605.6653 kcal/mol (15597.7663 without restraints) Performing minimization step: 486. Total energy = 15563.1453 kcal/mol (15555.2768 without restraints) Performing minimization step: 487. Total energy = 15520.8894 kcal/mol (15513.0512 without restraints) Performing minimization step: 488. Total energy = 15478.8953 kcal/mol (15471.0870 without restraints) Performing minimization step: 489. Total energy = 15437.1607 kcal/mol (15429.3821 without restraints) Performing minimization step: 490. Total energy = 15395.6830 kcal/mol (15387.9339 without restraints) Performing minimization step: 491. Total energy = 15354.4605 kcal/mol (15346.7405 without restraints) Performing minimization step: 492. Total energy = 15313.4906 kcal/mol (15305.7996 without restraints) Performing minimization step: 493. Total energy = 15272.7712 kcal/mol (15265.1088 without restraints) Performing minimization step: 494. Total energy = 15232.3001 kcal/mol (15224.6661 without restraints) Performing minimization step: 495. Total energy = 15192.0750 kcal/mol (15184.4692 without restraints) Performing minimization step: 496. Total energy = 15152.0939 kcal/mol (15144.5160 without restraints) Performing minimization step: 497. Total energy = 15112.3547 kcal/mol (15104.8044 without restraints) Performing minimization step: 498. Total energy = 15072.8551 kcal/mol (15065.3322 without restraints) Performing minimization step: 499. Total energy = 15033.5932 kcal/mol (15026.0975 without restraints) Performing minimization step: 500. Total energy = 14994.5668 kcal/mol (14987.0981 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 501. Total energy = 14955.7740 kcal/mol (14948.3319 without restraints) Performing minimization step: 502. Total energy = 14917.2126 kcal/mol (14909.7971 without restraints) Performing minimization step: 503. Total energy = 14878.8808 kcal/mol (14871.4915 without restraints) Performing minimization step: 504. Total energy = 14840.7766 kcal/mol (14833.4133 without restraints) Performing minimization step: 505. Total energy = 14802.8979 kcal/mol (14795.5604 without restraints) Performing minimization step: 506. Total energy = 14765.2428 kcal/mol (14757.9309 without restraints) Performing minimization step: 507. Total energy = 14727.8095 kcal/mol (14720.5229 without restraints) Performing minimization step: 508. Total energy = 14690.5960 kcal/mol (14683.3345 without restraints) Performing minimization step: 509. Total energy = 14653.6004 kcal/mol (14646.3639 without restraints) Performing minimization step: 510. Total energy = 14616.8209 kcal/mol (14609.6091 without restraints) Performing minimization step: 511. Total energy = 14580.2557 kcal/mol (14573.0683 without restraints) Performing minimization step: 512. Total energy = 14543.9029 kcal/mol (14536.7398 without restraints) Performing minimization step: 513. Total energy = 14507.7607 kcal/mol (14500.6216 without restraints) Performing minimization step: 514. Total energy = 14471.8273 kcal/mol (14464.7121 without restraints) Performing minimization step: 515. Total energy = 14436.1012 kcal/mol (14429.0098 without restraints) Performing minimization step: 516. Total energy = 14400.5805 kcal/mol (14393.5125 without restraints) Performing minimization step: 517. Total energy = 14365.2631 kcal/mol (14358.2183 without restraints) Performing minimization step: 518. Total energy = 14330.1475 kcal/mol (14323.1258 without restraints) Performing minimization step: 519. Total energy = 14295.2318 kcal/mol (14288.2329 without restraints) Performing minimization step: 520. Total energy = 14260.5150 kcal/mol (14253.5388 without restraints) Performing minimization step: 521. Total energy = 14225.9948 kcal/mol (14219.0411 without restraints) Performing minimization step: 522. Total energy = 14191.6698 kcal/mol (14184.7383 without restraints) Performing minimization step: 523. Total energy = 14157.5383 kcal/mol (14150.6289 without restraints) Performing minimization step: 524. Total energy = 14123.5986 kcal/mol (14116.7111 without restraints) Performing minimization step: 525. Total energy = 14089.8493 kcal/mol (14082.9835 without restraints) Performing minimization step: 526. Total energy = 14056.2886 kcal/mol (14049.4444 without restraints) Performing minimization step: 527. Total energy = 14022.9151 kcal/mol (14016.0923 without restraints) Performing minimization step: 528. Total energy = 13989.7272 kcal/mol (13982.9255 without restraints) Performing minimization step: 529. Total energy = 13956.7233 kcal/mol (13949.9426 without restraints) Performing minimization step: 530. Total energy = 13923.9017 kcal/mol (13917.1418 without restraints) Performing minimization step: 531. Total energy = 13891.2612 kcal/mol (13884.5221 without restraints) Performing minimization step: 532. Total energy = 13858.8003 kcal/mol (13852.0817 without restraints) Performing minimization step: 533. Total energy = 13826.5179 kcal/mol (13819.8195 without restraints) Performing minimization step: 534. Total energy = 13794.4115 kcal/mol (13787.7333 without restraints) Performing minimization step: 535. Total energy = 13762.4802 kcal/mol (13755.8220 without restraints) Performing minimization step: 536. Total energy = 13730.7226 kcal/mol (13724.0842 without restraints) Performing minimization step: 537. Total energy = 13699.1371 kcal/mol (13692.5184 without restraints) Performing minimization step: 538. Total energy = 13667.7225 kcal/mol (13661.1232 without restraints) Performing minimization step: 539. Total energy = 13636.4770 kcal/mol (13629.8971 without restraints) Performing minimization step: 540. Total energy = 13605.3998 kcal/mol (13598.8390 without restraints) Performing minimization step: 541. Total energy = 13574.4892 kcal/mol (13567.9475 without restraints) Performing minimization step: 542. Total energy = 13543.7439 kcal/mol (13537.2210 without restraints) Performing minimization step: 543. Total energy = 13513.1627 kcal/mol (13506.6585 without restraints) Performing minimization step: 544. Total energy = 13482.7437 kcal/mol (13476.2580 without restraints) Performing minimization step: 545. Total energy = 13452.4862 kcal/mol (13446.0189 without restraints) Performing minimization step: 546. Total energy = 13422.3886 kcal/mol (13415.9396 without restraints) Performing minimization step: 547. Total energy = 13392.4496 kcal/mol (13386.0187 without restraints) Performing minimization step: 548. Total energy = 13362.6681 kcal/mol (13356.2551 without restraints) Performing minimization step: 549. Total energy = 13333.0426 kcal/mol (13326.6474 without restraints) Performing minimization step: 550. Total energy = 13303.5720 kcal/mol (13297.1945 without restraints) Performing minimization step: 551. Total energy = 13274.2549 kcal/mol (13267.8950 without restraints) Performing minimization step: 552. Total energy = 13245.0904 kcal/mol (13238.7480 without restraints) Performing minimization step: 553. Total energy = 13216.0770 kcal/mol (13209.7516 without restraints) Performing minimization step: 554. Total energy = 13187.2133 kcal/mol (13180.9050 without restraints) Performing minimization step: 555. Total energy = 13158.4982 kcal/mol (13152.2069 without restraints) Performing minimization step: 556. Total energy = 13129.9307 kcal/mol (13123.6562 without restraints) Performing minimization step: 557. Total energy = 13101.5093 kcal/mol (13095.2514 without restraints) Performing minimization step: 558. Total energy = 13073.2331 kcal/mol (13066.9919 without restraints) Performing minimization step: 559. Total energy = 13045.1010 kcal/mol (13038.8762 without restraints) Performing minimization step: 560. Total energy = 13017.1117 kcal/mol (13010.9031 without restraints) Performing minimization step: 561. Total energy = 12989.2640 kcal/mol (12983.0716 without restraints) Performing minimization step: 562. Total energy = 12961.5569 kcal/mol (12955.3806 without restraints) Performing minimization step: 563. Total energy = 12933.9890 kcal/mol (12927.8286 without restraints) Performing minimization step: 564. Total energy = 12906.5597 kcal/mol (12900.4150 without restraints) Performing minimization step: 565. Total energy = 12879.2675 kcal/mol (12873.1385 without restraints) Performing minimization step: 566. Total energy = 12852.1115 kcal/mol (12845.9980 without restraints) Performing minimization step: 567. Total energy = 12825.0906 kcal/mol (12818.9925 without restraints) Performing minimization step: 568. Total energy = 12798.2035 kcal/mol (12792.1207 without restraints) Performing minimization step: 569. Total energy = 12771.4495 kcal/mol (12765.3818 without restraints) Performing minimization step: 570. Total energy = 12744.8273 kcal/mol (12738.7747 without restraints) Performing minimization step: 571. Total energy = 12718.3359 kcal/mol (12712.2982 without restraints) Performing minimization step: 572. Total energy = 12691.9743 kcal/mol (12685.9515 without restraints) Performing minimization step: 573. Total energy = 12665.7415 kcal/mol (12659.7333 without restraints) Performing minimization step: 574. Total energy = 12639.6366 kcal/mol (12633.6430 without restraints) Performing minimization step: 575. Total energy = 12613.6583 kcal/mol (12607.6792 without restraints) Performing minimization step: 576. Total energy = 12587.8058 kcal/mol (12581.8410 without restraints) Performing minimization step: 577. Total energy = 12562.0780 kcal/mol (12556.1274 without restraints) Performing minimization step: 578. Total energy = 12536.4740 kcal/mol (12530.5376 without restraints) Performing minimization step: 579. Total energy = 12510.9928 kcal/mol (12505.0704 without restraints) Performing minimization step: 580. Total energy = 12485.6335 kcal/mol (12479.7250 without restraints) Performing minimization step: 581. Total energy = 12460.3951 kcal/mol (12454.5004 without restraints) Performing minimization step: 582. Total energy = 12435.2767 kcal/mol (12429.3957 without restraints) Performing minimization step: 583. Total energy = 12410.2773 kcal/mol (12404.4098 without restraints) Performing minimization step: 584. Total energy = 12385.3959 kcal/mol (12379.5418 without restraints) Performing minimization step: 585. Total energy = 12360.6317 kcal/mol (12354.7911 without restraints) Performing minimization step: 586. Total energy = 12335.9838 kcal/mol (12330.1565 without restraints) Performing minimization step: 587. Total energy = 12311.4514 kcal/mol (12305.6372 without restraints) Performing minimization step: 588. Total energy = 12287.0334 kcal/mol (12281.2323 without restraints) Performing minimization step: 589. Total energy = 12262.7290 kcal/mol (12256.9409 without restraints) Performing minimization step: 590. Total energy = 12238.5373 kcal/mol (12232.7621 without restraints) Performing minimization step: 591. Total energy = 12214.4575 kcal/mol (12208.6950 without restraints) Performing minimization step: 592. Total energy = 12190.4887 kcal/mol (12184.7388 without restraints) Performing minimization step: 593. Total energy = 12166.6299 kcal/mol (12160.8927 without restraints) Performing minimization step: 594. Total energy = 12142.8805 kcal/mol (12137.1557 without restraints) Performing minimization step: 595. Total energy = 12119.2395 kcal/mol (12113.5271 without restraints) Performing minimization step: 596. Total energy = 12095.7061 kcal/mol (12090.0060 without restraints) Performing minimization step: 597. Total energy = 12072.2797 kcal/mol (12066.5918 without restraints) Performing minimization step: 598. Total energy = 12048.9590 kcal/mol (12043.2832 without restraints) Performing minimization step: 599. Total energy = 12025.7435 kcal/mol (12020.0797 without restraints) Performing minimization step: 600. Total energy = 12002.6323 kcal/mol (11996.9804 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 601. Total energy = 11979.6247 kcal/mol (11973.9846 without restraints) Performing minimization step: 602. Total energy = 11956.7195 kcal/mol (11951.0912 without restraints) Performing minimization step: 603. Total energy = 11933.9166 kcal/mol (11928.3000 without restraints) Performing minimization step: 604. Total energy = 11911.2150 kcal/mol (11905.6099 without restraints) Performing minimization step: 605. Total energy = 11888.6137 kcal/mol (11883.0201 without restraints) Performing minimization step: 606. Total energy = 11866.1121 kcal/mol (11860.5299 without restraints) Performing minimization step: 607. Total energy = 11843.7095 kcal/mol (11838.1386 without restraints) Performing minimization step: 608. Total energy = 11821.4050 kcal/mol (11815.8454 without restraints) Performing minimization step: 609. Total energy = 11799.1982 kcal/mol (11793.6496 without restraints) Performing minimization step: 610. Total energy = 11777.0878 kcal/mol (11771.5503 without restraints) Performing minimization step: 611. Total energy = 11755.0733 kcal/mol (11749.5469 without restraints) Performing minimization step: 612. Total energy = 11733.1541 kcal/mol (11727.6386 without restraints) Performing minimization step: 613. Total energy = 11711.3299 kcal/mol (11705.8251 without restraints) Performing minimization step: 614. Total energy = 11689.5990 kcal/mol (11684.1050 without restraints) Performing minimization step: 615. Total energy = 11667.9612 kcal/mol (11662.4778 without restraints) Performing minimization step: 616. Total energy = 11646.4158 kcal/mol (11640.9430 without restraints) Performing minimization step: 617. Total energy = 11624.9622 kcal/mol (11619.4998 without restraints) Performing minimization step: 618. Total energy = 11603.5995 kcal/mol (11598.1476 without restraints) Performing minimization step: 619. Total energy = 11582.3272 kcal/mol (11576.8856 without restraints) Performing minimization step: 620. Total energy = 11561.1445 kcal/mol (11555.7132 without restraints) Performing minimization step: 621. Total energy = 11540.0509 kcal/mol (11534.6297 without restraints) Performing minimization step: 622. Total energy = 11519.0455 kcal/mol (11513.6345 without restraints) Performing minimization step: 623. Total energy = 11498.1279 kcal/mol (11492.7269 without restraints) Performing minimization step: 624. Total energy = 11477.2972 kcal/mol (11471.9063 without restraints) Performing minimization step: 625. Total energy = 11456.5530 kcal/mol (11451.1719 without restraints) Performing minimization step: 626. Total energy = 11435.8945 kcal/mol (11430.5233 without restraints) Performing minimization step: 627. Total energy = 11415.3211 kcal/mol (11409.9596 without restraints) Performing minimization step: 628. Total energy = 11394.8321 kcal/mol (11389.4804 without restraints) Performing minimization step: 629. Total energy = 11374.4271 kcal/mol (11369.0849 without restraints) Performing minimization step: 630. Total energy = 11354.1054 kcal/mol (11348.7728 without restraints) Performing minimization step: 631. Total energy = 11333.8662 kcal/mol (11328.5430 without restraints) Performing minimization step: 632. Total energy = 11313.7089 kcal/mol (11308.3952 without restraints) Performing minimization step: 633. Total energy = 11293.6331 kcal/mol (11288.3288 without restraints) Performing minimization step: 634. Total energy = 11273.6381 kcal/mol (11268.3430 without restraints) Performing minimization step: 635. Total energy = 11253.7233 kcal/mol (11248.4375 without restraints) Performing minimization step: 636. Total energy = 11233.8883 kcal/mol (11228.6117 without restraints) Performing minimization step: 637. Total energy = 11214.1323 kcal/mol (11208.8647 without restraints) Performing minimization step: 638. Total energy = 11194.4547 kcal/mol (11189.1961 without restraints) Performing minimization step: 639. Total energy = 11174.8550 kcal/mol (11169.6053 without restraints) Performing minimization step: 640. Total energy = 11155.3325 kcal/mol (11150.0916 without restraints) Performing minimization step: 641. Total energy = 11135.8867 kcal/mol (11130.6547 without restraints) Performing minimization step: 642. Total energy = 11116.5172 kcal/mol (11111.2941 without restraints) Performing minimization step: 643. Total energy = 11097.2235 kcal/mol (11092.0090 without restraints) Performing minimization step: 644. Total energy = 11078.0048 kcal/mol (11072.7990 without restraints) Performing minimization step: 645. Total energy = 11058.8607 kcal/mol (11053.6635 without restraints) Performing minimization step: 646. Total energy = 11039.7905 kcal/mol (11034.6018 without restraints) Performing minimization step: 647. Total energy = 11020.7939 kcal/mol (11015.6137 without restraints) Performing minimization step: 648. Total energy = 11001.8703 kcal/mol (10996.6985 without restraints) Performing minimization step: 649. Total energy = 10983.0192 kcal/mol (10977.8557 without restraints) Performing minimization step: 650. Total energy = 10964.2400 kcal/mol (10959.0848 without restraints) Performing minimization step: 651. Total energy = 10945.5321 kcal/mol (10940.3852 without restraints) Performing minimization step: 652. Total energy = 10926.8952 kcal/mol (10921.7564 without restraints) Performing minimization step: 653. Total energy = 10908.3287 kcal/mol (10903.1980 without restraints) Performing minimization step: 654. Total energy = 10889.8320 kcal/mol (10884.7094 without restraints) Performing minimization step: 655. Total energy = 10871.4048 kcal/mol (10866.2901 without restraints) Performing minimization step: 656. Total energy = 10853.0464 kcal/mol (10847.9397 without restraints) Performing minimization step: 657. Total energy = 10834.7564 kcal/mol (10829.6576 without restraints) Performing minimization step: 658. Total energy = 10816.5343 kcal/mol (10811.4434 without restraints) Performing minimization step: 659. Total energy = 10798.3797 kcal/mol (10793.2966 without restraints) Performing minimization step: 660. Total energy = 10780.2920 kcal/mol (10775.2166 without restraints) Performing minimization step: 661. Total energy = 10762.2712 kcal/mol (10757.2035 without restraints) Performing minimization step: 662. Total energy = 10744.3160 kcal/mol (10739.2560 without restraints) Performing minimization step: 663. Total energy = 10726.4266 kcal/mol (10721.3742 without restraints) Performing minimization step: 664. Total energy = 10708.6021 kcal/mol (10703.5572 without restraints) Performing minimization step: 665. Total energy = 10690.8423 kcal/mol (10685.8048 without restraints) Performing minimization step: 666. Total energy = 10673.1465 kcal/mol (10668.1165 without restraints) Performing minimization step: 667. Total energy = 10655.5145 kcal/mol (10650.4919 without restraints) Performing minimization step: 668. Total energy = 10637.9458 kcal/mol (10632.9305 without restraints) Performing minimization step: 669. Total energy = 10620.4400 kcal/mol (10615.4320 without restraints) Performing minimization step: 670. Total energy = 10602.9965 kcal/mol (10597.9957 without restraints) Performing minimization step: 671. Total energy = 10585.6149 kcal/mol (10580.6214 without restraints) Performing minimization step: 672. Total energy = 10568.2950 kcal/mol (10563.3085 without restraints) Performing minimization step: 673. Total energy = 10551.0362 kcal/mol (10546.0568 without restraints) Performing minimization step: 674. Total energy = 10533.8380 kcal/mol (10528.8657 without restraints) Performing minimization step: 675. Total energy = 10516.7002 kcal/mol (10511.7351 without restraints) Performing minimization step: 676. Total energy = 10499.6223 kcal/mol (10494.6640 without restraints) Performing minimization step: 677. Total energy = 10482.6037 kcal/mol (10477.6523 without restraints) Performing minimization step: 678. Total energy = 10465.6442 kcal/mol (10460.6996 without restraints) Performing minimization step: 679. Total energy = 10448.7432 kcal/mol (10443.8055 without restraints) Performing minimization step: 680. Total energy = 10431.9005 kcal/mol (10426.9696 without restraints) Performing minimization step: 681. Total energy = 10415.1157 kcal/mol (10410.1914 without restraints) Performing minimization step: 682. Total energy = 10398.3882 kcal/mol (10393.4707 without restraints) Performing minimization step: 683. Total energy = 10381.7178 kcal/mol (10376.8069 without restraints) Performing minimization step: 684. Total energy = 10365.1040 kcal/mol (10360.1997 without restraints) Performing minimization step: 685. Total energy = 10348.5465 kcal/mol (10343.6488 without restraints) Performing minimization step: 686. Total energy = 10332.0449 kcal/mol (10327.1537 without restraints) Performing minimization step: 687. Total energy = 10315.5988 kcal/mol (10310.7141 without restraints) Performing minimization step: 688. Total energy = 10299.2078 kcal/mol (10294.3295 without restraints) Performing minimization step: 689. Total energy = 10282.8715 kcal/mol (10277.9997 without restraints) Performing minimization step: 690. Total energy = 10266.5899 kcal/mol (10261.7244 without restraints) Performing minimization step: 691. Total energy = 10250.3621 kcal/mol (10245.5029 without restraints) Performing minimization step: 692. Total energy = 10234.1880 kcal/mol (10229.3352 without restraints) Performing minimization step: 693. Total energy = 10218.0672 kcal/mol (10213.2206 without restraints) Performing minimization step: 694. Total energy = 10201.9993 kcal/mol (10197.1589 without restraints) Performing minimization step: 695. Total energy = 10185.9840 kcal/mol (10181.1497 without restraints) Performing minimization step: 696. Total energy = 10170.0209 kcal/mol (10165.1927 without restraints) Performing minimization step: 697. Total energy = 10154.1097 kcal/mol (10149.2876 without restraints) Performing minimization step: 698. Total energy = 10138.2500 kcal/mol (10133.4340 without restraints) Performing minimization step: 699. Total energy = 10122.4415 kcal/mol (10117.6315 without restraints) Performing minimization step: 700. Total energy = 10106.6839 kcal/mol (10101.8798 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 701. Total energy = 10090.9768 kcal/mol (10086.1787 without restraints) Performing minimization step: 702. Total energy = 10075.3200 kcal/mol (10070.5278 without restraints) Performing minimization step: 703. Total energy = 10059.7130 kcal/mol (10054.9267 without restraints) Performing minimization step: 704. Total energy = 10044.1556 kcal/mol (10039.3751 without restraints) Performing minimization step: 705. Total energy = 10028.6473 kcal/mol (10023.8726 without restraints) Performing minimization step: 706. Total energy = 10013.1880 kcal/mol (10008.4190 without restraints) Performing minimization step: 707. Total energy = 9997.7772 kcal/mol (9993.0140 without restraints) Performing minimization step: 708. Total energy = 9982.4147 kcal/mol (9977.6572 without restraints) Performing minimization step: 709. Total energy = 9967.1001 kcal/mol (9962.3483 without restraints) Performing minimization step: 710. Total energy = 9951.8332 kcal/mol (9947.0870 without restraints) Performing minimization step: 711. Total energy = 9936.6136 kcal/mol (9931.8730 without restraints) Performing minimization step: 712. Total energy = 9921.4412 kcal/mol (9916.7061 without restraints) Performing minimization step: 713. Total energy = 9906.3154 kcal/mol (9901.5858 without restraints) Performing minimization step: 714. Total energy = 9891.2359 kcal/mol (9886.5118 without restraints) Performing minimization step: 715. Total energy = 9876.2027 kcal/mol (9871.4842 without restraints) Performing minimization step: 716. Total energy = 9861.2153 kcal/mol (9856.5021 without restraints) Performing minimization step: 717. Total energy = 9846.2732 kcal/mol (9841.5653 without restraints) Performing minimization step: 718. Total energy = 9831.3764 kcal/mol (9826.6740 without restraints) Performing minimization step: 719. Total energy = 9816.5246 kcal/mol (9811.8275 without restraints) Performing minimization step: 720. Total energy = 9801.7175 kcal/mol (9797.0257 without restraints) Performing minimization step: 721. Total energy = 9786.9547 kcal/mol (9782.2682 without restraints) Performing minimization step: 722. Total energy = 9772.2361 kcal/mol (9767.5548 without restraints) Performing minimization step: 723. Total energy = 9757.5612 kcal/mol (9752.8852 without restraints) Performing minimization step: 724. Total energy = 9742.9300 kcal/mol (9738.2591 without restraints) Performing minimization step: 725. Total energy = 9728.3419 kcal/mol (9723.6763 without restraints) Performing minimization step: 726. Total energy = 9713.7969 kcal/mol (9709.1364 without restraints) Performing minimization step: 727. Total energy = 9699.2947 kcal/mol (9694.6392 without restraints) Performing minimization step: 728. Total energy = 9684.8349 kcal/mol (9680.1845 without restraints) Performing minimization step: 729. Total energy = 9670.4173 kcal/mol (9665.7719 without restraints) Performing minimization step: 730. Total energy = 9656.0416 kcal/mol (9651.4013 without restraints) Performing minimization step: 731. Total energy = 9641.7076 kcal/mol (9637.0723 without restraints) Performing minimization step: 732. Total energy = 9627.4151 kcal/mol (9622.7847 without restraints) Performing minimization step: 733. Total energy = 9613.1637 kcal/mol (9608.5382 without restraints) Performing minimization step: 734. Total energy = 9598.9532 kcal/mol (9594.3326 without restraints) Performing minimization step: 735. Total energy = 9584.7830 kcal/mol (9580.1673 without restraints) Performing minimization step: 736. Total energy = 9570.6536 kcal/mol (9566.0428 without restraints) Performing minimization step: 737. Total energy = 9556.5644 kcal/mol (9551.9583 without restraints) Performing minimization step: 738. Total energy = 9542.5150 kcal/mol (9537.9138 without restraints) Performing minimization step: 739. Total energy = 9528.5054 kcal/mol (9523.9089 without restraints) Performing minimization step: 740. Total energy = 9514.5353 kcal/mol (9509.9437 without restraints) Performing minimization step: 741. Total energy = 9500.6044 kcal/mol (9496.0174 without restraints) Performing minimization step: 742. Total energy = 9486.7124 kcal/mol (9482.1301 without restraints) Performing minimization step: 743. Total energy = 9472.8590 kcal/mol (9468.2814 without restraints) Performing minimization step: 744. Total energy = 9459.0442 kcal/mol (9454.4712 without restraints) Performing minimization step: 745. Total energy = 9445.2676 kcal/mol (9440.6993 without restraints) Performing minimization step: 746. Total energy = 9431.5290 kcal/mol (9426.9653 without restraints) Performing minimization step: 747. Total energy = 9417.8283 kcal/mol (9413.2691 without restraints) Performing minimization step: 748. Total energy = 9404.1652 kcal/mol (9399.6105 without restraints) Performing minimization step: 749. Total energy = 9390.5394 kcal/mol (9385.9892 without restraints) Performing minimization step: 750. Total energy = 9376.9507 kcal/mol (9372.4051 without restraints) Performing minimization step: 751. Total energy = 9363.3990 kcal/mol (9358.8578 without restraints) Performing minimization step: 752. Total energy = 9349.8837 kcal/mol (9345.3470 without restraints) Performing minimization step: 753. Total energy = 9336.4051 kcal/mol (9331.8729 without restraints) Performing minimization step: 754. Total energy = 9322.9629 kcal/mol (9318.4350 without restraints) Performing minimization step: 755. Total energy = 9309.5566 kcal/mol (9305.0332 without restraints) Performing minimization step: 756. Total energy = 9296.1862 kcal/mol (9291.6671 without restraints) Performing minimization step: 757. Total energy = 9282.8515 kcal/mol (9278.3367 without restraints) Performing minimization step: 758. Total energy = 9269.5520 kcal/mol (9265.0415 without restraints) Performing minimization step: 759. Total energy = 9256.2878 kcal/mol (9251.7817 without restraints) Performing minimization step: 760. Total energy = 9243.0588 kcal/mol (9238.5569 without restraints) Performing minimization step: 761. Total energy = 9229.8645 kcal/mol (9225.3669 without restraints) Performing minimization step: 762. Total energy = 9216.7049 kcal/mol (9212.2115 without restraints) Performing minimization step: 763. Total energy = 9203.5797 kcal/mol (9199.0905 without restraints) Performing minimization step: 764. Total energy = 9190.4887 kcal/mol (9186.0037 without restraints) Performing minimization step: 765. Total energy = 9177.4317 kcal/mol (9172.9510 without restraints) Performing minimization step: 766. Total energy = 9164.4084 kcal/mol (9159.9318 without restraints) Performing minimization step: 767. Total energy = 9151.4190 kcal/mol (9146.9465 without restraints) Performing minimization step: 768. Total energy = 9138.4630 kcal/mol (9133.9946 without restraints) Performing minimization step: 769. Total energy = 9125.5402 kcal/mol (9121.0759 without restraints) Performing minimization step: 770. Total energy = 9112.6508 kcal/mol (9108.1906 without restraints) Performing minimization step: 771. Total energy = 9099.7940 kcal/mol (9095.3378 without restraints) Performing minimization step: 772. Total energy = 9086.9700 kcal/mol (9082.5178 without restraints) Performing minimization step: 773. Total energy = 9074.1784 kcal/mol (9069.7303 without restraints) Performing minimization step: 774. Total energy = 9061.4192 kcal/mol (9056.9751 without restraints) Performing minimization step: 775. Total energy = 9048.6920 kcal/mol (9044.2519 without restraints) Performing minimization step: 776. Total energy = 9035.9970 kcal/mol (9031.5608 without restraints) Performing minimization step: 777. Total energy = 9023.3338 kcal/mol (9018.9017 without restraints) Performing minimization step: 778. Total energy = 9010.7023 kcal/mol (9006.2740 without restraints) Performing minimization step: 779. Total energy = 8998.1022 kcal/mol (8993.6778 without restraints) Performing minimization step: 780. Total energy = 8985.5334 kcal/mol (8981.1129 without restraints) Performing minimization step: 781. Total energy = 8972.9958 kcal/mol (8968.5791 without restraints) Performing minimization step: 782. Total energy = 8960.4890 kcal/mol (8956.0762 without restraints) Performing minimization step: 783. Total energy = 8948.0131 kcal/mol (8943.6041 without restraints) Performing minimization step: 784. Total energy = 8935.5678 kcal/mol (8931.1626 without restraints) Performing minimization step: 785. Total energy = 8923.1527 kcal/mol (8918.7513 without restraints) Performing minimization step: 786. Total energy = 8910.7681 kcal/mol (8906.3705 without restraints) Performing minimization step: 787. Total energy = 8898.4137 kcal/mol (8894.0198 without restraints) Performing minimization step: 788. Total energy = 8886.0892 kcal/mol (8881.6991 without restraints) Performing minimization step: 789. Total energy = 8873.7947 kcal/mol (8869.4084 without restraints) Performing minimization step: 790. Total energy = 8861.5297 kcal/mol (8857.1471 without restraints) Performing minimization step: 791. Total energy = 8849.2942 kcal/mol (8844.9153 without restraints) Performing minimization step: 792. Total energy = 8837.0881 kcal/mol (8832.7128 without restraints) Performing minimization step: 793. Total energy = 8824.9110 kcal/mol (8820.5394 without restraints) Performing minimization step: 794. Total energy = 8812.7631 kcal/mol (8808.3951 without restraints) Performing minimization step: 795. Total energy = 8800.6440 kcal/mol (8796.2797 without restraints) Performing minimization step: 796. Total energy = 8788.5536 kcal/mol (8784.1929 without restraints) Performing minimization step: 797. Total energy = 8776.4917 kcal/mol (8772.1345 without restraints) Performing minimization step: 798. Total energy = 8764.4583 kcal/mol (8760.1048 without restraints) Performing minimization step: 799. Total energy = 8752.4532 kcal/mol (8748.1033 without restraints) Performing minimization step: 800. Total energy = 8740.4763 kcal/mol (8736.1299 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 801. Total energy = 8728.5275 kcal/mol (8724.1847 without restraints) Performing minimization step: 802. Total energy = 8716.6067 kcal/mol (8712.2674 without restraints) Performing minimization step: 803. Total energy = 8704.7133 kcal/mol (8700.3775 without restraints) Performing minimization step: 804. Total energy = 8692.8475 kcal/mol (8688.5152 without restraints) Performing minimization step: 805. Total energy = 8681.0091 kcal/mol (8676.6803 without restraints) Performing minimization step: 806. Total energy = 8669.1980 kcal/mol (8664.8726 without restraints) Performing minimization step: 807. Total energy = 8657.4140 kcal/mol (8653.0921 without restraints) Performing minimization step: 808. Total energy = 8645.6571 kcal/mol (8641.3386 without restraints) Performing minimization step: 809. Total energy = 8633.9271 kcal/mol (8629.6120 without restraints) Performing minimization step: 810. Total energy = 8622.2237 kcal/mol (8617.9121 without restraints) Performing minimization step: 811. Total energy = 8610.5471 kcal/mol (8606.2390 without restraints) Performing minimization step: 812. Total energy = 8598.8970 kcal/mol (8594.5922 without restraints) Performing minimization step: 813. Total energy = 8587.2732 kcal/mol (8582.9717 without restraints) Performing minimization step: 814. Total energy = 8575.6755 kcal/mol (8571.3774 without restraints) Performing minimization step: 815. Total energy = 8564.1043 kcal/mol (8559.8096 without restraints) Performing minimization step: 816. Total energy = 8552.5588 kcal/mol (8548.2673 without restraints) Performing minimization step: 817. Total energy = 8541.0390 kcal/mol (8536.7509 without restraints) Performing minimization step: 818. Total energy = 8529.5450 kcal/mol (8525.2602 without restraints) Performing minimization step: 819. Total energy = 8518.0765 kcal/mol (8513.7950 without restraints) Performing minimization step: 820. Total energy = 8506.6335 kcal/mol (8502.3553 without restraints) Performing minimization step: 821. Total energy = 8495.2159 kcal/mol (8490.9409 without restraints) Performing minimization step: 822. Total energy = 8483.8233 kcal/mol (8479.5515 without restraints) Performing minimization step: 823. Total energy = 8472.4559 kcal/mol (8468.1874 without restraints) Performing minimization step: 824. Total energy = 8461.1135 kcal/mol (8456.8483 without restraints) Performing minimization step: 825. Total energy = 8449.7960 kcal/mol (8445.5339 without restraints) Performing minimization step: 826. Total energy = 8438.5034 kcal/mol (8434.2446 without restraints) Performing minimization step: 827. Total energy = 8427.2353 kcal/mol (8422.9797 without restraints) Performing minimization step: 828. Total energy = 8415.9917 kcal/mol (8411.7392 without restraints) Performing minimization step: 829. Total energy = 8404.7725 kcal/mol (8400.5232 without restraints) Performing minimization step: 830. Total energy = 8393.5775 kcal/mol (8389.3314 without restraints) Performing minimization step: 831. Total energy = 8382.4069 kcal/mol (8378.1640 without restraints) Performing minimization step: 832. Total energy = 8371.2602 kcal/mol (8367.0204 without restraints) Performing minimization step: 833. Total energy = 8360.1375 kcal/mol (8355.9009 without restraints) Performing minimization step: 834. Total energy = 8349.0388 kcal/mol (8344.8052 without restraints) Performing minimization step: 835. Total energy = 8337.9636 kcal/mol (8333.7331 without restraints) Performing minimization step: 836. Total energy = 8326.9120 kcal/mol (8322.6846 without restraints) Performing minimization step: 837. Total energy = 8315.8838 kcal/mol (8311.6595 without restraints) Performing minimization step: 838. Total energy = 8304.8791 kcal/mol (8300.6579 without restraints) Performing minimization step: 839. Total energy = 8293.8977 kcal/mol (8289.6795 without restraints) Performing minimization step: 840. Total energy = 8282.9394 kcal/mol (8278.7243 without restraints) Performing minimization step: 841. Total energy = 8272.0043 kcal/mol (8267.7922 without restraints) Performing minimization step: 842. Total energy = 8261.0922 kcal/mol (8256.8831 without restraints) Performing minimization step: 843. Total energy = 8250.2029 kcal/mol (8245.9968 without restraints) Performing minimization step: 844. Total energy = 8239.3363 kcal/mol (8235.1333 without restraints) Performing minimization step: 845. Total energy = 8228.4925 kcal/mol (8224.2925 without restraints) Performing minimization step: 846. Total energy = 8217.6712 kcal/mol (8213.4742 without restraints) Performing minimization step: 847. Total energy = 8206.8724 kcal/mol (8202.6783 without restraints) Performing minimization step: 848. Total energy = 8196.0960 kcal/mol (8191.9049 without restraints) Performing minimization step: 849. Total energy = 8185.3419 kcal/mol (8181.1537 without restraints) Performing minimization step: 850. Total energy = 8174.6099 kcal/mol (8170.4247 without restraints) Performing minimization step: 851. Total energy = 8163.9001 kcal/mol (8159.7179 without restraints) Performing minimization step: 852. Total energy = 8153.2122 kcal/mol (8149.0327 without restraints) Performing minimization step: 853. Total energy = 8142.5461 kcal/mol (8138.3696 without restraints) Performing minimization step: 854. Total energy = 8131.9019 kcal/mol (8127.7283 without restraints) Performing minimization step: 855. Total energy = 8121.2794 kcal/mol (8117.1087 without restraints) Performing minimization step: 856. Total energy = 8110.6785 kcal/mol (8106.5107 without restraints) Performing minimization step: 857. Total energy = 8100.0991 kcal/mol (8095.9342 without restraints) Performing minimization step: 858. Total energy = 8089.5411 kcal/mol (8085.3791 without restraints) Performing minimization step: 859. Total energy = 8079.0045 kcal/mol (8074.8454 without restraints) Performing minimization step: 860. Total energy = 8068.4890 kcal/mol (8064.3327 without restraints) Performing minimization step: 861. Total energy = 8057.9948 kcal/mol (8053.8413 without restraints) Performing minimization step: 862. Total energy = 8047.5217 kcal/mol (8043.3710 without restraints) Performing minimization step: 863. Total energy = 8037.0695 kcal/mol (8032.9217 without restraints) Performing minimization step: 864. Total energy = 8026.6383 kcal/mol (8022.4933 without restraints) Performing minimization step: 865. Total energy = 8016.2278 kcal/mol (8012.0856 without restraints) Performing minimization step: 866. Total energy = 8005.8381 kcal/mol (8001.6987 without restraints) Performing minimization step: 867. Total energy = 7995.4690 kcal/mol (7991.3324 without restraints) Performing minimization step: 868. Total energy = 7985.1205 kcal/mol (7980.9867 without restraints) Performing minimization step: 869. Total energy = 7974.7924 kcal/mol (7970.6614 without restraints) Performing minimization step: 870. Total energy = 7964.4848 kcal/mol (7960.3565 without restraints) Performing minimization step: 871. Total energy = 7954.1974 kcal/mol (7950.0719 without restraints) Performing minimization step: 872. Total energy = 7943.9303 kcal/mol (7939.8075 without restraints) Performing minimization step: 873. Total energy = 7933.6833 kcal/mol (7929.5632 without restraints) Performing minimization step: 874. Total energy = 7923.4563 kcal/mol (7919.3390 without restraints) Performing minimization step: 875. Total energy = 7913.2494 kcal/mol (7909.1348 without restraints) Performing minimization step: 876. Total energy = 7903.0623 kcal/mol (7898.9504 without restraints) Performing minimization step: 877. Total energy = 7892.8950 kcal/mol (7888.7859 without restraints) Performing minimization step: 878. Total energy = 7882.7475 kcal/mol (7878.6411 without restraints) Performing minimization step: 879. Total energy = 7872.6197 kcal/mol (7868.5159 without restraints) Performing minimization step: 880. Total energy = 7862.5115 kcal/mol (7858.4103 without restraints) Performing minimization step: 881. Total energy = 7852.4227 kcal/mol (7848.3243 without restraints) Performing minimization step: 882. Total energy = 7842.3534 kcal/mol (7838.2576 without restraints) Performing minimization step: 883. Total energy = 7832.3035 kcal/mol (7828.2104 without restraints) Performing minimization step: 884. Total energy = 7822.2729 kcal/mol (7818.1824 without restraints) Performing minimization step: 885. Total energy = 7812.2614 kcal/mol (7808.1736 without restraints) Performing minimization step: 886. Total energy = 7802.2691 kcal/mol (7798.1839 without restraints) Performing minimization step: 887. Total energy = 7792.2959 kcal/mol (7788.2133 without restraints) Performing minimization step: 888. Total energy = 7782.3416 kcal/mol (7778.2617 without restraints) Performing minimization step: 889. Total energy = 7772.4063 kcal/mol (7768.3290 without restraints) Performing minimization step: 890. Total energy = 7762.4898 kcal/mol (7758.4151 without restraints) Performing minimization step: 891. Total energy = 7752.5921 kcal/mol (7748.5200 without restraints) Performing minimization step: 892. Total energy = 7742.7131 kcal/mol (7738.6436 without restraints) Performing minimization step: 893. Total energy = 7732.8527 kcal/mol (7728.7858 without restraints) Performing minimization step: 894. Total energy = 7723.0109 kcal/mol (7718.9466 without restraints) Performing minimization step: 895. Total energy = 7713.1875 kcal/mol (7709.1257 without restraints) Performing minimization step: 896. Total energy = 7703.3825 kcal/mol (7699.3233 without restraints) Performing minimization step: 897. Total energy = 7693.5960 kcal/mol (7689.5394 without restraints) Performing minimization step: 898. Total energy = 7683.8278 kcal/mol (7679.7737 without restraints) Performing minimization step: 899. Total energy = 7674.0778 kcal/mol (7670.0263 without restraints) Performing minimization step: 900. Total energy = 7664.3460 kcal/mol (7660.2970 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 901. Total energy = 7654.6323 kcal/mol (7650.5858 without restraints) Performing minimization step: 902. Total energy = 7644.9366 kcal/mol (7640.8926 without restraints) Performing minimization step: 903. Total energy = 7635.2588 kcal/mol (7631.2174 without restraints) Performing minimization step: 904. Total energy = 7625.5990 kcal/mol (7621.5601 without restraints) Performing minimization step: 905. Total energy = 7615.9570 kcal/mol (7611.9206 without restraints) Performing minimization step: 906. Total energy = 7606.3328 kcal/mol (7602.2989 without restraints) Performing minimization step: 907. Total energy = 7596.7263 kcal/mol (7592.6949 without restraints) Performing minimization step: 908. Total energy = 7587.1375 kcal/mol (7583.1086 without restraints) Performing minimization step: 909. Total energy = 7577.5662 kcal/mol (7573.5398 without restraints) Performing minimization step: 910. Total energy = 7568.0125 kcal/mol (7563.9886 without restraints) Performing minimization step: 911. Total energy = 7558.4762 kcal/mol (7554.4547 without restraints) Performing minimization step: 912. Total energy = 7548.9573 kcal/mol (7544.9383 without restraints) Performing minimization step: 913. Total energy = 7539.4558 kcal/mol (7535.4392 without restraints) Performing minimization step: 914. Total energy = 7529.9715 kcal/mol (7525.9574 without restraints) Performing minimization step: 915. Total energy = 7520.5045 kcal/mol (7516.4928 without restraints) Performing minimization step: 916. Total energy = 7511.0544 kcal/mol (7507.0451 without restraints) Performing minimization step: 917. Total energy = 7501.6216 kcal/mol (7497.6148 without restraints) Performing minimization step: 918. Total energy = 7492.2060 kcal/mol (7488.2017 without restraints) Performing minimization step: 919. Total energy = 7482.8074 kcal/mol (7478.8054 without restraints) Performing minimization step: 920. Total energy = 7473.4257 kcal/mol (7469.4263 without restraints) Performing minimization step: 921. Total energy = 7464.0609 kcal/mol (7460.0637 without restraints) Performing minimization step: 922. Total energy = 7454.7127 kcal/mol (7450.7180 without restraints) Performing minimization step: 923. Total energy = 7445.3814 kcal/mol (7441.3891 without restraints) Performing minimization step: 924. Total energy = 7436.0667 kcal/mol (7432.0768 without restraints) Performing minimization step: 925. Total energy = 7426.7687 kcal/mol (7422.7812 without restraints) Performing minimization step: 926. Total energy = 7417.4873 kcal/mol (7413.5021 without restraints) Performing minimization step: 927. Total energy = 7408.2221 kcal/mol (7404.2393 without restraints) Performing minimization step: 928. Total energy = 7398.9738 kcal/mol (7394.9934 without restraints) Performing minimization step: 929. Total energy = 7389.7418 kcal/mol (7385.7638 without restraints) Performing minimization step: 930. Total energy = 7380.5262 kcal/mol (7376.5506 without restraints) Performing minimization step: 931. Total energy = 7371.3269 kcal/mol (7367.3534 without restraints) Performing minimization step: 932. Total energy = 7362.1437 kcal/mol (7358.1728 without restraints) Performing minimization step: 933. Total energy = 7352.9770 kcal/mol (7349.0083 without restraints) Performing minimization step: 934. Total energy = 7343.8264 kcal/mol (7339.8601 without restraints) Performing minimization step: 935. Total energy = 7334.6917 kcal/mol (7330.7277 without restraints) Performing minimization step: 936. Total energy = 7325.5732 kcal/mol (7321.6116 without restraints) Performing minimization step: 937. Total energy = 7316.4708 kcal/mol (7312.5115 without restraints) Performing minimization step: 938. Total energy = 7307.3844 kcal/mol (7303.4274 without restraints) Performing minimization step: 939. Total energy = 7298.3138 kcal/mol (7294.3591 without restraints) Performing minimization step: 940. Total energy = 7289.2591 kcal/mol (7285.3067 without restraints) Performing minimization step: 941. Total energy = 7280.2202 kcal/mol (7276.2702 without restraints) Performing minimization step: 942. Total energy = 7271.1972 kcal/mol (7267.2494 without restraints) Performing minimization step: 943. Total energy = 7262.1898 kcal/mol (7258.2443 without restraints) Performing minimization step: 944. Total energy = 7253.1981 kcal/mol (7249.2549 without restraints) Performing minimization step: 945. Total energy = 7244.2217 kcal/mol (7240.2808 without restraints) Performing minimization step: 946. Total energy = 7235.2616 kcal/mol (7231.3229 without restraints) Performing minimization step: 947. Total energy = 7226.3165 kcal/mol (7222.3802 without restraints) Performing minimization step: 948. Total energy = 7217.3870 kcal/mol (7213.4529 without restraints) Performing minimization step: 949. Total energy = 7208.4729 kcal/mol (7204.5411 without restraints) Performing minimization step: 950. Total energy = 7199.5742 kcal/mol (7195.6446 without restraints) Performing minimization step: 951. Total energy = 7190.6908 kcal/mol (7186.7635 without restraints) Performing minimization step: 952. Total energy = 7181.8227 kcal/mol (7177.8976 without restraints) Performing minimization step: 953. Total energy = 7172.9694 kcal/mol (7169.0466 without restraints) Performing minimization step: 954. Total energy = 7164.1317 kcal/mol (7160.2112 without restraints) Performing minimization step: 955. Total energy = 7155.3092 kcal/mol (7151.3909 without restraints) Performing minimization step: 956. Total energy = 7146.5018 kcal/mol (7142.5857 without restraints) Performing minimization step: 957. Total energy = 7137.7095 kcal/mol (7133.7956 without restraints) Performing minimization step: 958. Total energy = 7128.9321 kcal/mol (7125.0205 without restraints) Performing minimization step: 959. Total energy = 7120.1697 kcal/mol (7116.2603 without restraints) Performing minimization step: 960. Total energy = 7111.4223 kcal/mol (7107.5151 without restraints) Performing minimization step: 961. Total energy = 7102.6898 kcal/mol (7098.7848 without restraints) Performing minimization step: 962. Total energy = 7093.9721 kcal/mol (7090.0693 without restraints) Performing minimization step: 963. Total energy = 7085.2691 kcal/mol (7081.3686 without restraints) Performing minimization step: 964. Total energy = 7076.5810 kcal/mol (7072.6826 without restraints) Performing minimization step: 965. Total energy = 7067.9074 kcal/mol (7064.0111 without restraints) Performing minimization step: 966. Total energy = 7059.2485 kcal/mol (7055.3545 without restraints) Performing minimization step: 967. Total energy = 7050.6042 kcal/mol (7046.7124 without restraints) Performing minimization step: 968. Total energy = 7041.9747 kcal/mol (7038.0851 without restraints) Performing minimization step: 969. Total energy = 7033.3597 kcal/mol (7029.4722 without restraints) Performing minimization step: 970. Total energy = 7024.7592 kcal/mol (7020.8739 without restraints) Performing minimization step: 971. Total energy = 7016.1732 kcal/mol (7012.2901 without restraints) Performing minimization step: 972. Total energy = 7007.6016 kcal/mol (7003.7206 without restraints) Performing minimization step: 973. Total energy = 6999.0444 kcal/mol (6995.1656 without restraints) Performing minimization step: 974. Total energy = 6990.5015 kcal/mol (6986.6249 without restraints) Performing minimization step: 975. Total energy = 6981.9729 kcal/mol (6978.0985 without restraints) Performing minimization step: 976. Total energy = 6973.4587 kcal/mol (6969.5863 without restraints) Performing minimization step: 977. Total energy = 6964.9586 kcal/mol (6961.0884 without restraints) Performing minimization step: 978. Total energy = 6956.4727 kcal/mol (6952.6047 without restraints) Performing minimization step: 979. Total energy = 6948.0010 kcal/mol (6944.1351 without restraints) Performing minimization step: 980. Total energy = 6939.5434 kcal/mol (6935.6796 without restraints) Performing minimization step: 981. Total energy = 6931.0998 kcal/mol (6927.2382 without restraints) Performing minimization step: 982. Total energy = 6922.6703 kcal/mol (6918.8108 without restraints) Performing minimization step: 983. Total energy = 6914.2548 kcal/mol (6910.3974 without restraints) Performing minimization step: 984. Total energy = 6905.8532 kcal/mol (6901.9979 without restraints) Performing minimization step: 985. Total energy = 6897.4656 kcal/mol (6893.6124 without restraints) Performing minimization step: 986. Total energy = 6889.0916 kcal/mol (6885.2406 without restraints) Performing minimization step: 987. Total energy = 6880.7317 kcal/mol (6876.8828 without restraints) Performing minimization step: 988. Total energy = 6872.3856 kcal/mol (6868.5388 without restraints) Performing minimization step: 989. Total energy = 6864.0533 kcal/mol (6860.2085 without restraints) Performing minimization step: 990. Total energy = 6855.7343 kcal/mol (6851.8916 without restraints) Performing minimization step: 991. Total energy = 6847.4294 kcal/mol (6843.5888 without restraints) Performing minimization step: 992. Total energy = 6839.1382 kcal/mol (6835.2997 without restraints) Performing minimization step: 993. Total energy = 6830.8605 kcal/mol (6827.0240 without restraints) Performing minimization step: 994. Total energy = 6822.5966 kcal/mol (6818.7623 without restraints) Performing minimization step: 995. Total energy = 6814.3462 kcal/mol (6810.5139 without restraints) Performing minimization step: 996. Total energy = 6806.1093 kcal/mol (6802.2791 without restraints) Performing minimization step: 997. Total energy = 6797.8859 kcal/mol (6794.0577 without restraints) Performing minimization step: 998. Total energy = 6789.6759 kcal/mol (6785.8499 without restraints) Performing minimization step: 999. Total energy = 6781.4794 kcal/mol (6777.6554 without restraints) Performing minimization step: 1000. Total energy = 6773.2963 kcal/mol (6769.4743 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 6765.1265 kcal/mol (6761.3066 without restraints) Performing minimization step: 1002. Total energy = 6756.9700 kcal/mol (6753.1521 without restraints) Performing minimization step: 1003. Total energy = 6748.8268 kcal/mol (6745.0110 without restraints) Performing minimization step: 1004. Total energy = 6740.6968 kcal/mol (6736.8831 without restraints) Performing minimization step: 1005. Total energy = 6732.5801 kcal/mol (6728.7684 without restraints) Performing minimization step: 1006. Total energy = 6724.4766 kcal/mol (6720.6669 without restraints) Performing minimization step: 1007. Total energy = 6716.3862 kcal/mol (6712.5785 without restraints) Performing minimization step: 1008. Total energy = 6708.3089 kcal/mol (6704.5033 without restraints) Performing minimization step: 1009. Total energy = 6700.2450 kcal/mol (6696.4414 without restraints) Performing minimization step: 1010. Total energy = 6692.1939 kcal/mol (6688.3923 without restraints) Performing minimization step: 1011. Total energy = 6684.1558 kcal/mol (6680.3562 without restraints) Performing minimization step: 1012. Total energy = 6676.1306 kcal/mol (6672.3331 without restraints) Performing minimization step: 1013. Total energy = 6668.1185 kcal/mol (6664.3230 without restraints) Performing minimization step: 1014. Total energy = 6660.1193 kcal/mol (6656.3258 without restraints) Performing minimization step: 1015. Total energy = 6652.1330 kcal/mol (6648.3415 without restraints) Performing minimization step: 1016. Total energy = 6644.1594 kcal/mol (6640.3698 without restraints) Performing minimization step: 1017. Total energy = 6636.1985 kcal/mol (6632.4110 without restraints) Performing minimization step: 1018. Total energy = 6628.2507 kcal/mol (6624.4652 without restraints) Performing minimization step: 1019. Total energy = 6620.3156 kcal/mol (6616.5322 without restraints) Performing minimization step: 1020. Total energy = 6612.3933 kcal/mol (6608.6119 without restraints) Performing minimization step: 1021. Total energy = 6604.4838 kcal/mol (6600.7043 without restraints) Performing minimization step: 1022. Total energy = 6596.5869 kcal/mol (6592.8094 without restraints) Performing minimization step: 1023. Total energy = 6588.7028 kcal/mol (6584.9273 without restraints) Performing minimization step: 1024. Total energy = 6580.8312 kcal/mol (6577.0576 without restraints) Performing minimization step: 1025. Total energy = 6572.9721 kcal/mol (6569.2006 without restraints) Performing minimization step: 1026. Total energy = 6565.1257 kcal/mol (6561.3561 without restraints) Performing minimization step: 1027. Total energy = 6557.2917 kcal/mol (6553.5241 without restraints) Performing minimization step: 1028. Total energy = 6549.4703 kcal/mol (6545.7046 without restraints) Performing minimization step: 1029. Total energy = 6541.6613 kcal/mol (6537.8976 without restraints) Performing minimization step: 1030. Total energy = 6533.8648 kcal/mol (6530.1031 without restraints) Performing minimization step: 1031. Total energy = 6526.0807 kcal/mol (6522.3210 without restraints) Performing minimization step: 1032. Total energy = 6518.3090 kcal/mol (6514.5512 without restraints) Performing minimization step: 1033. Total energy = 6510.5497 kcal/mol (6506.7938 without restraints) Performing minimization step: 1034. Total energy = 6502.8027 kcal/mol (6499.0488 without restraints) Performing minimization step: 1035. Total energy = 6495.0680 kcal/mol (6491.3160 without restraints) Performing minimization step: 1036. Total energy = 6487.3460 kcal/mol (6483.5960 without restraints) Performing minimization step: 1037. Total energy = 6479.6358 kcal/mol (6475.8878 without restraints) Performing minimization step: 1038. Total energy = 6471.9379 kcal/mol (6468.1917 without restraints) Performing minimization step: 1039. Total energy = 6464.2521 kcal/mol (6460.5079 without restraints) Performing minimization step: 1040. Total energy = 6456.5786 kcal/mol (6452.8363 without restraints) Performing minimization step: 1041. Total energy = 6448.9169 kcal/mol (6445.1765 without restraints) Performing minimization step: 1042. Total energy = 6441.2675 kcal/mol (6437.5291 without restraints) Performing minimization step: 1043. Total energy = 6433.6305 kcal/mol (6429.8940 without restraints) Performing minimization step: 1044. Total energy = 6426.0053 kcal/mol (6422.2707 without restraints) Performing minimization step: 1045. Total energy = 6418.3921 kcal/mol (6414.6595 without restraints) Performing minimization step: 1046. Total energy = 6410.7910 kcal/mol (6407.0602 without restraints) Performing minimization step: 1047. Total energy = 6403.2018 kcal/mol (6399.4730 without restraints) Performing minimization step: 1048. Total energy = 6395.6246 kcal/mol (6391.8977 without restraints) Performing minimization step: 1049. Total energy = 6388.0593 kcal/mol (6384.3343 without restraints) Performing minimization step: 1050. Total energy = 6380.5059 kcal/mol (6376.7828 without restraints) Performing minimization step: 1051. Total energy = 6372.9644 kcal/mol (6369.2432 without restraints) Performing minimization step: 1052. Total energy = 6365.4347 kcal/mol (6361.7154 without restraints) Performing minimization step: 1053. Total energy = 6357.9169 kcal/mol (6354.1995 without restraints) Performing minimization step: 1054. Total energy = 6350.4106 kcal/mol (6346.6951 without restraints) Performing minimization step: 1055. Total energy = 6342.9163 kcal/mol (6339.2027 without restraints) Performing minimization step: 1056. Total energy = 6335.4342 kcal/mol (6331.7225 without restraints) Performing minimization step: 1057. Total energy = 6327.9636 kcal/mol (6324.2538 without restraints) Performing minimization step: 1058. Total energy = 6320.5046 kcal/mol (6316.7966 without restraints) Performing minimization step: 1059. Total energy = 6313.0571 kcal/mol (6309.3510 without restraints) Performing minimization step: 1060. Total energy = 6305.6214 kcal/mol (6301.9173 without restraints) Performing minimization step: 1061. Total energy = 6298.1974 kcal/mol (6294.4950 without restraints) Performing minimization step: 1062. Total energy = 6290.7848 kcal/mol (6287.0843 without restraints) Performing minimization step: 1063. Total energy = 6283.3838 kcal/mol (6279.6852 without restraints) Performing minimization step: 1064. Total energy = 6275.9944 kcal/mol (6272.2976 without restraints) Performing minimization step: 1065. Total energy = 6268.6164 kcal/mol (6264.9216 without restraints) Performing minimization step: 1066. Total energy = 6261.2500 kcal/mol (6257.5570 without restraints) Performing minimization step: 1067. Total energy = 6253.8949 kcal/mol (6250.2037 without restraints) Performing minimization step: 1068. Total energy = 6246.5514 kcal/mol (6242.8621 without restraints) Performing minimization step: 1069. Total energy = 6239.2193 kcal/mol (6235.5319 without restraints) Performing minimization step: 1070. Total energy = 6231.8987 kcal/mol (6228.2131 without restraints) Performing minimization step: 1071. Total energy = 6224.5890 kcal/mol (6220.9053 without restraints) Performing minimization step: 1072. Total energy = 6217.2911 kcal/mol (6213.6092 without restraints) Performing minimization step: 1073. Total energy = 6210.0045 kcal/mol (6206.3245 without restraints) Performing minimization step: 1074. Total energy = 6202.7293 kcal/mol (6199.0510 without restraints) Performing minimization step: 1075. Total energy = 6195.4655 kcal/mol (6191.7891 without restraints) Performing minimization step: 1076. Total energy = 6188.2128 kcal/mol (6184.5382 without restraints) Performing minimization step: 1077. Total energy = 6180.9713 kcal/mol (6177.2986 without restraints) Performing minimization step: 1078. Total energy = 6173.7410 kcal/mol (6170.0702 without restraints) Performing minimization step: 1079. Total energy = 6166.5220 kcal/mol (6162.8529 without restraints) Performing minimization step: 1080. Total energy = 6159.3141 kcal/mol (6155.6469 without restraints) Performing minimization step: 1081. Total energy = 6152.1174 kcal/mol (6148.4520 without restraints) Performing minimization step: 1082. Total energy = 6144.9318 kcal/mol (6141.2682 without restraints) Performing minimization step: 1083. Total energy = 6137.7573 kcal/mol (6134.0955 without restraints) Performing minimization step: 1084. Total energy = 6130.5939 kcal/mol (6126.9339 without restraints) Performing minimization step: 1085. Total energy = 6123.4415 kcal/mol (6119.7834 without restraints) Performing minimization step: 1086. Total energy = 6116.3002 kcal/mol (6112.6439 without restraints) Performing minimization step: 1087. Total energy = 6109.1699 kcal/mol (6105.5154 without restraints) Performing minimization step: 1088. Total energy = 6102.0508 kcal/mol (6098.3981 without restraints) Performing minimization step: 1089. Total energy = 6094.9425 kcal/mol (6091.2916 without restraints) Performing minimization step: 1090. Total energy = 6087.8452 kcal/mol (6084.1961 without restraints) Performing minimization step: 1091. Total energy = 6080.7589 kcal/mol (6077.1116 without restraints) Performing minimization step: 1092. Total energy = 6073.6834 kcal/mol (6070.0379 without restraints) Performing minimization step: 1093. Total energy = 6066.6189 kcal/mol (6062.9753 without restraints) Performing minimization step: 1094. Total energy = 6059.5653 kcal/mol (6055.9234 without restraints) Performing minimization step: 1095. Total energy = 6052.5224 kcal/mol (6048.8823 without restraints) Performing minimization step: 1096. Total energy = 6045.4903 kcal/mol (6041.8520 without restraints) Performing minimization step: 1097. Total energy = 6038.4690 kcal/mol (6034.8325 without restraints) Performing minimization step: 1098. Total energy = 6031.4585 kcal/mol (6027.8237 without restraints) Performing minimization step: 1099. Total energy = 6024.4588 kcal/mol (6020.8258 without restraints) Performing minimization step: 1100. Total energy = 6017.4698 kcal/mol (6013.8386 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 6010.4915 kcal/mol (6006.8621 without restraints) Performing minimization step: 1102. Total energy = 6003.5239 kcal/mol (5999.8963 without restraints) Performing minimization step: 1103. Total energy = 5996.5670 kcal/mol (5992.9411 without restraints) Performing minimization step: 1104. Total energy = 5989.6208 kcal/mol (5985.9967 without restraints) Performing minimization step: 1105. Total energy = 5982.6852 kcal/mol (5979.0629 without restraints) Performing minimization step: 1106. Total energy = 5975.7602 kcal/mol (5972.1397 without restraints) Performing minimization step: 1107. Total energy = 5968.8460 kcal/mol (5965.2272 without restraints) Performing minimization step: 1108. Total energy = 5961.9423 kcal/mol (5958.3252 without restraints) Performing minimization step: 1109. Total energy = 5955.0490 kcal/mol (5951.4337 without restraints) Performing minimization step: 1110. Total energy = 5948.1663 kcal/mol (5944.5528 without restraints) Performing minimization step: 1111. Total energy = 5941.2941 kcal/mol (5937.6824 without restraints) Performing minimization step: 1112. Total energy = 5934.4325 kcal/mol (5930.8224 without restraints) Performing minimization step: 1113. Total energy = 5927.5813 kcal/mol (5923.9730 without restraints) Performing minimization step: 1114. Total energy = 5920.7406 kcal/mol (5917.1340 without restraints) Performing minimization step: 1115. Total energy = 5913.9105 kcal/mol (5910.3057 without restraints) Performing minimization step: 1116. Total energy = 5907.0906 kcal/mol (5903.4876 without restraints) Performing minimization step: 1117. Total energy = 5900.2811 kcal/mol (5896.6798 without restraints) Performing minimization step: 1118. Total energy = 5893.4820 kcal/mol (5889.8825 without restraints) Performing minimization step: 1119. Total energy = 5886.6933 kcal/mol (5883.0955 without restraints) Performing minimization step: 1120. Total energy = 5879.9149 kcal/mol (5876.3188 without restraints) Performing minimization step: 1121. Total energy = 5873.1469 kcal/mol (5869.5525 without restraints) Performing minimization step: 1122. Total energy = 5866.3891 kcal/mol (5862.7965 without restraints) Performing minimization step: 1123. Total energy = 5859.6416 kcal/mol (5856.0507 without restraints) Performing minimization step: 1124. Total energy = 5852.9043 kcal/mol (5849.3150 without restraints) Performing minimization step: 1125. Total energy = 5846.1772 kcal/mol (5842.5898 without restraints) Performing minimization step: 1126. Total energy = 5839.4607 kcal/mol (5835.8749 without restraints) Performing minimization step: 1127. Total energy = 5832.7542 kcal/mol (5829.1702 without restraints) Performing minimization step: 1128. Total energy = 5826.0578 kcal/mol (5822.4756 without restraints) Performing minimization step: 1129. Total energy = 5819.3717 kcal/mol (5815.7911 without restraints) Performing minimization step: 1130. Total energy = 5812.6957 kcal/mol (5809.1168 without restraints) Performing minimization step: 1131. Total energy = 5806.0296 kcal/mol (5802.4525 without restraints) Performing minimization step: 1132. Total energy = 5799.3739 kcal/mol (5795.7984 without restraints) Performing minimization step: 1133. Total energy = 5792.7282 kcal/mol (5789.1545 without restraints) Performing minimization step: 1134. Total energy = 5786.0927 kcal/mol (5782.5207 without restraints) Performing minimization step: 1135. Total energy = 5779.4672 kcal/mol (5775.8969 without restraints) Performing minimization step: 1136. Total energy = 5772.8517 kcal/mol (5769.2831 without restraints) Performing minimization step: 1137. Total energy = 5766.2459 kcal/mol (5762.6789 without restraints) Performing minimization step: 1138. Total energy = 5759.6505 kcal/mol (5756.0852 without restraints) Performing minimization step: 1139. Total energy = 5753.0650 kcal/mol (5749.5015 without restraints) Performing minimization step: 1140. Total energy = 5746.4896 kcal/mol (5742.9278 without restraints) Performing minimization step: 1141. Total energy = 5739.9241 kcal/mol (5736.3640 without restraints) Performing minimization step: 1142. Total energy = 5733.3686 kcal/mol (5729.8101 without restraints) Performing minimization step: 1143. Total energy = 5726.8225 kcal/mol (5723.2658 without restraints) Performing minimization step: 1144. Total energy = 5720.2868 kcal/mol (5716.7317 without restraints) Performing minimization step: 1145. Total energy = 5713.7610 kcal/mol (5710.2076 without restraints) Performing minimization step: 1146. Total energy = 5707.2450 kcal/mol (5703.6933 without restraints) Performing minimization step: 1147. Total energy = 5700.7389 kcal/mol (5697.1889 without restraints) Performing minimization step: 1148. Total energy = 5694.2426 kcal/mol (5690.6943 without restraints) Performing minimization step: 1149. Total energy = 5687.7562 kcal/mol (5684.2095 without restraints) Performing minimization step: 1150. Total energy = 5681.2795 kcal/mol (5677.7345 without restraints) Performing minimization step: 1151. Total energy = 5674.8126 kcal/mol (5671.2693 without restraints) Performing minimization step: 1152. Total energy = 5668.3555 kcal/mol (5664.8138 without restraints) Performing minimization step: 1153. Total energy = 5661.9081 kcal/mol (5658.3681 without restraints) Performing minimization step: 1154. Total energy = 5655.4705 kcal/mol (5651.9321 without restraints) Performing minimization step: 1155. Total energy = 5649.0426 kcal/mol (5645.5059 without restraints) Performing minimization step: 1156. Total energy = 5642.6244 kcal/mol (5639.0895 without restraints) Performing minimization step: 1157. Total energy = 5636.2162 kcal/mol (5632.6829 without restraints) Performing minimization step: 1158. Total energy = 5629.8173 kcal/mol (5626.2856 without restraints) Performing minimization step: 1159. Total energy = 5623.4281 kcal/mol (5619.8981 without restraints) Performing minimization step: 1160. Total energy = 5617.0485 kcal/mol (5613.5201 without restraints) Performing minimization step: 1161. Total energy = 5610.6785 kcal/mol (5607.1518 without restraints) Performing minimization step: 1162. Total energy = 5604.3181 kcal/mol (5600.7930 without restraints) Performing minimization step: 1163. Total energy = 5597.9673 kcal/mol (5594.4438 without restraints) Performing minimization step: 1164. Total energy = 5591.6261 kcal/mol (5588.1042 without restraints) Performing minimization step: 1165. Total energy = 5585.2944 kcal/mol (5581.7742 without restraints) Performing minimization step: 1166. Total energy = 5578.9722 kcal/mol (5575.4536 without restraints) Performing minimization step: 1167. Total energy = 5572.6595 kcal/mol (5569.1426 without restraints) Performing minimization step: 1168. Total energy = 5566.3564 kcal/mol (5562.8411 without restraints) Performing minimization step: 1169. Total energy = 5560.0627 kcal/mol (5556.5491 without restraints) Performing minimization step: 1170. Total energy = 5553.7785 kcal/mol (5550.2665 without restraints) Performing minimization step: 1171. Total energy = 5547.5037 kcal/mol (5543.9933 without restraints) Performing minimization step: 1172. Total energy = 5541.2384 kcal/mol (5537.7296 without restraints) Performing minimization step: 1173. Total energy = 5534.9827 kcal/mol (5531.4756 without restraints) Performing minimization step: 1174. Total energy = 5528.7362 kcal/mol (5525.2307 without restraints) Performing minimization step: 1175. Total energy = 5522.4991 kcal/mol (5518.9952 without restraints) Performing minimization step: 1176. Total energy = 5516.2713 kcal/mol (5512.7691 without restraints) Performing minimization step: 1177. Total energy = 5510.0527 kcal/mol (5506.5520 without restraints) Performing minimization step: 1178. Total energy = 5503.8436 kcal/mol (5500.3446 without restraints) Performing minimization step: 1179. Total energy = 5497.6438 kcal/mol (5494.1464 without restraints) Performing minimization step: 1180. Total energy = 5491.4534 kcal/mol (5487.9576 without restraints) Performing minimization step: 1181. Total energy = 5485.2722 kcal/mol (5481.7781 without restraints) Performing minimization step: 1182. Total energy = 5479.1004 kcal/mol (5475.6078 without restraints) Performing minimization step: 1183. Total energy = 5472.9377 kcal/mol (5469.4468 without restraints) Performing minimization step: 1184. Total energy = 5466.7844 kcal/mol (5463.2950 without restraints) Performing minimization step: 1185. Total energy = 5460.6402 kcal/mol (5457.1525 without restraints) Performing minimization step: 1186. Total energy = 5454.5053 kcal/mol (5451.0192 without restraints) Performing minimization step: 1187. Total energy = 5448.3795 kcal/mol (5444.8950 without restraints) Performing minimization step: 1188. Total energy = 5442.2630 kcal/mol (5438.7801 without restraints) Performing minimization step: 1189. Total energy = 5436.1556 kcal/mol (5432.6743 without restraints) Performing minimization step: 1190. Total energy = 5430.0573 kcal/mol (5426.5776 without restraints) Performing minimization step: 1191. Total energy = 5423.9682 kcal/mol (5420.4901 without restraints) Performing minimization step: 1192. Total energy = 5417.8883 kcal/mol (5414.4117 without restraints) Performing minimization step: 1193. Total energy = 5411.8174 kcal/mol (5408.3424 without restraints) Performing minimization step: 1194. Total energy = 5405.7556 kcal/mol (5402.2822 without restraints) Performing minimization step: 1195. Total energy = 5399.7029 kcal/mol (5396.2311 without restraints) Performing minimization step: 1196. Total energy = 5393.6592 kcal/mol (5390.1890 without restraints) Performing minimization step: 1197. Total energy = 5387.6246 kcal/mol (5384.1560 without restraints) Performing minimization step: 1198. Total energy = 5381.5990 kcal/mol (5378.1320 without restraints) Performing minimization step: 1199. Total energy = 5375.5825 kcal/mol (5372.1170 without restraints) Performing minimization step: 1200. Total energy = 5369.5749 kcal/mol (5366.1110 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 5363.5763 kcal/mol (5360.1140 without restraints) Performing minimization step: 1202. Total energy = 5357.5867 kcal/mol (5354.1260 without restraints) Performing minimization step: 1203. Total energy = 5351.6063 kcal/mol (5348.1472 without restraints) Performing minimization step: 1204. Total energy = 5345.6346 kcal/mol (5342.1770 without restraints) Performing minimization step: 1205. Total energy = 5339.6718 kcal/mol (5336.2158 without restraints) Performing minimization step: 1206. Total energy = 5333.7179 kcal/mol (5330.2635 without restraints) Performing minimization step: 1207. Total energy = 5327.7729 kcal/mol (5324.3201 without restraints) Performing minimization step: 1208. Total energy = 5321.8368 kcal/mol (5318.3855 without restraints) Performing minimization step: 1209. Total energy = 5315.9096 kcal/mol (5312.4599 without restraints) Performing minimization step: 1210. Total energy = 5309.9913 kcal/mol (5306.5431 without restraints) Performing minimization step: 1211. Total energy = 5304.0819 kcal/mol (5300.6353 without restraints) Performing minimization step: 1212. Total energy = 5298.1812 kcal/mol (5294.7362 without restraints) Performing minimization step: 1213. Total energy = 5292.2893 kcal/mol (5288.8458 without restraints) Performing minimization step: 1214. Total energy = 5286.4062 kcal/mol (5282.9643 without restraints) Performing minimization step: 1215. Total energy = 5280.5318 kcal/mol (5277.0915 without restraints) Performing minimization step: 1216. Total energy = 5274.6663 kcal/mol (5271.2275 without restraints) Performing minimization step: 1217. Total energy = 5268.8095 kcal/mol (5265.3722 without restraints) Performing minimization step: 1218. Total energy = 5262.9615 kcal/mol (5259.5257 without restraints) Performing minimization step: 1219. Total energy = 5257.1222 kcal/mol (5253.6879 without restraints) Performing minimization step: 1220. Total energy = 5251.2915 kcal/mol (5247.8589 without restraints) Performing minimization step: 1221. Total energy = 5245.4694 kcal/mol (5242.0382 without restraints) Performing minimization step: 1222. Total energy = 5239.6561 kcal/mol (5236.2265 without restraints) Performing minimization step: 1223. Total energy = 5233.8518 kcal/mol (5230.4237 without restraints) Performing minimization step: 1224. Total energy = 5228.0558 kcal/mol (5224.6293 without restraints) Performing minimization step: 1225. Total energy = 5222.2686 kcal/mol (5218.8436 without restraints) Performing minimization step: 1226. Total energy = 5216.4897 kcal/mol (5213.0663 without restraints) Performing minimization step: 1227. Total energy = 5210.7197 kcal/mol (5207.2977 without restraints) Performing minimization step: 1228. Total energy = 5204.9582 kcal/mol (5201.5378 without restraints) Performing minimization step: 1229. Total energy = 5199.2055 kcal/mol (5195.7867 without restraints) Performing minimization step: 1230. Total energy = 5193.4613 kcal/mol (5190.0439 without restraints) Performing minimization step: 1231. Total energy = 5187.7256 kcal/mol (5184.3097 without restraints) Performing minimization step: 1232. Total energy = 5181.9984 kcal/mol (5178.5841 without restraints) Performing minimization step: 1233. Total energy = 5176.2797 kcal/mol (5172.8669 without restraints) Performing minimization step: 1234. Total energy = 5170.5696 kcal/mol (5167.1583 without restraints) Performing minimization step: 1235. Total energy = 5164.8679 kcal/mol (5161.4581 without restraints) Performing minimization step: 1236. Total energy = 5159.1747 kcal/mol (5155.7665 without restraints) Performing minimization step: 1237. Total energy = 5153.4901 kcal/mol (5150.0833 without restraints) Performing minimization step: 1238. Total energy = 5147.8139 kcal/mol (5144.4087 without restraints) Performing minimization step: 1239. Total energy = 5142.1461 kcal/mol (5138.7424 without restraints) Performing minimization step: 1240. Total energy = 5136.4868 kcal/mol (5133.0846 without restraints) Performing minimization step: 1241. Total energy = 5130.8359 kcal/mol (5127.4352 without restraints) Performing minimization step: 1242. Total energy = 5125.1934 kcal/mol (5121.7942 without restraints) Performing minimization step: 1243. Total energy = 5119.5592 kcal/mol (5116.1616 without restraints) Performing minimization step: 1244. Total energy = 5113.9335 kcal/mol (5110.5373 without restraints) Performing minimization step: 1245. Total energy = 5108.3161 kcal/mol (5104.9215 without restraints) Performing minimization step: 1246. Total energy = 5102.7071 kcal/mol (5099.3140 without restraints) Performing minimization step: 1247. Total energy = 5097.1065 kcal/mol (5093.7148 without restraints) Performing minimization step: 1248. Total energy = 5091.5141 kcal/mol (5088.1239 without restraints) Performing minimization step: 1249. Total energy = 5085.9301 kcal/mol (5082.5414 without restraints) Performing minimization step: 1250. Total energy = 5080.3544 kcal/mol (5076.9672 without restraints) Performing minimization step: 1251. Total energy = 5074.7870 kcal/mol (5071.4012 without restraints) Performing minimization step: 1252. Total energy = 5069.2278 kcal/mol (5065.8436 without restraints) Performing minimization step: 1253. Total energy = 5063.6769 kcal/mol (5060.2942 without restraints) Performing minimization step: 1254. Total energy = 5058.1343 kcal/mol (5054.7530 without restraints) Performing minimization step: 1255. Total energy = 5052.5998 kcal/mol (5049.2201 without restraints) Performing minimization step: 1256. Total energy = 5047.0734 kcal/mol (5043.6952 without restraints) Performing minimization step: 1257. Total energy = 5041.5555 kcal/mol (5038.1787 without restraints) Performing minimization step: 1258. Total energy = 5036.0457 kcal/mol (5032.6703 without restraints) Performing minimization step: 1259. Total energy = 5030.5441 kcal/mol (5027.1702 without restraints) Performing minimization step: 1260. Total energy = 5025.0507 kcal/mol (5021.6783 without restraints) Performing minimization step: 1261. Total energy = 5019.5654 kcal/mol (5016.1945 without restraints) Performing minimization step: 1262. Total energy = 5014.0882 kcal/mol (5010.7188 without restraints) Performing minimization step: 1263. Total energy = 5008.6193 kcal/mol (5005.2513 without restraints) Performing minimization step: 1264. Total energy = 5003.1584 kcal/mol (4999.7919 without restraints) Performing minimization step: 1265. Total energy = 4997.7056 kcal/mol (4994.3406 without restraints) Performing minimization step: 1266. Total energy = 4992.2609 kcal/mol (4988.8974 without restraints) Performing minimization step: 1267. Total energy = 4986.8243 kcal/mol (4983.4622 without restraints) Performing minimization step: 1268. Total energy = 4981.3960 kcal/mol (4978.0354 without restraints) Performing minimization step: 1269. Total energy = 4975.9755 kcal/mol (4972.6164 without restraints) Performing minimization step: 1270. Total energy = 4970.5631 kcal/mol (4967.2054 without restraints) Performing minimization step: 1271. Total energy = 4965.1587 kcal/mol (4961.8024 without restraints) Performing minimization step: 1272. Total energy = 4959.7623 kcal/mol (4956.4075 without restraints) Performing minimization step: 1273. Total energy = 4954.3740 kcal/mol (4951.0206 without restraints) Performing minimization step: 1274. Total energy = 4948.9936 kcal/mol (4945.6417 without restraints) Performing minimization step: 1275. Total energy = 4943.6216 kcal/mol (4940.2711 without restraints) Performing minimization step: 1276. Total energy = 4938.2571 kcal/mol (4934.9081 without restraints) Performing minimization step: 1277. Total energy = 4932.9007 kcal/mol (4929.5531 without restraints) Performing minimization step: 1278. Total energy = 4927.5521 kcal/mol (4924.2060 without restraints) Performing minimization step: 1279. Total energy = 4922.2115 kcal/mol (4918.8668 without restraints) Performing minimization step: 1280. Total energy = 4916.8781 kcal/mol (4913.5349 without restraints) Performing minimization step: 1281. Total energy = 4911.5533 kcal/mol (4908.2116 without restraints) Performing minimization step: 1282. Total energy = 4906.2367 kcal/mol (4902.8963 without restraints) Performing minimization step: 1283. Total energy = 4900.9276 kcal/mol (4897.5887 without restraints) Performing minimization step: 1284. Total energy = 4895.6265 kcal/mol (4892.2890 without restraints) Performing minimization step: 1285. Total energy = 4890.3332 kcal/mol (4886.9972 without restraints) Performing minimization step: 1286. Total energy = 4885.0478 kcal/mol (4881.7131 without restraints) Performing minimization step: 1287. Total energy = 4879.7701 kcal/mol (4876.4370 without restraints) Performing minimization step: 1288. Total energy = 4874.5003 kcal/mol (4871.1686 without restraints) Performing minimization step: 1289. Total energy = 4869.2384 kcal/mol (4865.9081 without restraints) Performing minimization step: 1290. Total energy = 4863.9842 kcal/mol (4860.6553 without restraints) Performing minimization step: 1291. Total energy = 4858.7378 kcal/mol (4855.4103 without restraints) Performing minimization step: 1292. Total energy = 4853.4991 kcal/mol (4850.1731 without restraints) Performing minimization step: 1293. Total energy = 4848.2683 kcal/mol (4844.9436 without restraints) Performing minimization step: 1294. Total energy = 4843.0451 kcal/mol (4839.7219 without restraints) Performing minimization step: 1295. Total energy = 4837.8297 kcal/mol (4834.5079 without restraints) Performing minimization step: 1296. Total energy = 4832.6220 kcal/mol (4829.3016 without restraints) Performing minimization step: 1297. Total energy = 4827.4221 kcal/mol (4824.1031 without restraints) Performing minimization step: 1298. Total energy = 4822.2298 kcal/mol (4818.9122 without restraints) Performing minimization step: 1299. Total energy = 4817.0452 kcal/mol (4813.7290 without restraints) Performing minimization step: 1300. Total energy = 4811.8683 kcal/mol (4808.5535 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 4806.6990 kcal/mol (4803.3857 without restraints) Performing minimization step: 1302. Total energy = 4801.5373 kcal/mol (4798.2253 without restraints) Performing minimization step: 1303. Total energy = 4796.3832 kcal/mol (4793.0727 without restraints) Performing minimization step: 1304. Total energy = 4791.2369 kcal/mol (4787.9278 without restraints) Performing minimization step: 1305. Total energy = 4786.0982 kcal/mol (4782.7905 without restraints) Performing minimization step: 1306. Total energy = 4780.9671 kcal/mol (4777.6608 without restraints) Performing minimization step: 1307. Total energy = 4775.8435 kcal/mol (4772.5386 without restraints) Performing minimization step: 1308. Total energy = 4770.7276 kcal/mol (4767.4241 without restraints) Performing minimization step: 1309. Total energy = 4765.6192 kcal/mol (4762.3171 without restraints) Performing minimization step: 1310. Total energy = 4760.5184 kcal/mol (4757.2177 without restraints) Performing minimization step: 1311. Total energy = 4755.4251 kcal/mol (4752.1258 without restraints) Performing minimization step: 1312. Total energy = 4750.3394 kcal/mol (4747.0414 without restraints) Performing minimization step: 1313. Total energy = 4745.2612 kcal/mol (4741.9646 without restraints) Performing minimization step: 1314. Total energy = 4740.1905 kcal/mol (4736.8953 without restraints) Performing minimization step: 1315. Total energy = 4735.1273 kcal/mol (4731.8335 without restraints) Performing minimization step: 1316. Total energy = 4730.0715 kcal/mol (4726.7792 without restraints) Performing minimization step: 1317. Total energy = 4725.0233 kcal/mol (4721.7323 without restraints) Performing minimization step: 1318. Total energy = 4719.9827 kcal/mol (4716.6931 without restraints) Performing minimization step: 1319. Total energy = 4714.9493 kcal/mol (4711.6611 without restraints) Performing minimization step: 1320. Total energy = 4709.9234 kcal/mol (4706.6366 without restraints) Performing minimization step: 1321. Total energy = 4704.9048 kcal/mol (4701.6193 without restraints) Performing minimization step: 1322. Total energy = 4699.8937 kcal/mol (4696.6096 without restraints) Performing minimization step: 1323. Total energy = 4694.8900 kcal/mol (4691.6073 without restraints) Performing minimization step: 1324. Total energy = 4689.8938 kcal/mol (4686.6124 without restraints) Performing minimization step: 1325. Total energy = 4684.9049 kcal/mol (4681.6249 without restraints) Performing minimization step: 1326. Total energy = 4679.9234 kcal/mol (4676.6447 without restraints) Performing minimization step: 1327. Total energy = 4674.9492 kcal/mol (4671.6720 without restraints) Performing minimization step: 1328. Total energy = 4669.9824 kcal/mol (4666.7065 without restraints) Performing minimization step: 1329. Total energy = 4665.0229 kcal/mol (4661.7484 without restraints) Performing minimization step: 1330. Total energy = 4660.0708 kcal/mol (4656.7976 without restraints) Performing minimization step: 1331. Total energy = 4655.1259 kcal/mol (4651.8541 without restraints) Performing minimization step: 1332. Total energy = 4650.1884 kcal/mol (4646.9179 without restraints) Performing minimization step: 1333. Total energy = 4645.2581 kcal/mol (4641.9891 without restraints) Performing minimization step: 1334. Total energy = 4640.3352 kcal/mol (4637.0675 without restraints) Performing minimization step: 1335. Total energy = 4635.4197 kcal/mol (4632.1533 without restraints) Performing minimization step: 1336. Total energy = 4630.5113 kcal/mol (4627.2463 without restraints) Performing minimization step: 1337. Total energy = 4625.6101 kcal/mol (4622.3464 without restraints) Performing minimization step: 1338. Total energy = 4620.7161 kcal/mol (4617.4538 without restraints) Performing minimization step: 1339. Total energy = 4615.8294 kcal/mol (4612.5685 without restraints) Performing minimization step: 1340. Total energy = 4610.9499 kcal/mol (4607.6903 without restraints) Performing minimization step: 1341. Total energy = 4606.0776 kcal/mol (4602.8193 without restraints) Performing minimization step: 1342. Total energy = 4601.2124 kcal/mol (4597.9555 without restraints) Performing minimization step: 1343. Total energy = 4596.3545 kcal/mol (4593.0989 without restraints) Performing minimization step: 1344. Total energy = 4591.5037 kcal/mol (4588.2495 without restraints) Performing minimization step: 1345. Total energy = 4586.6602 kcal/mol (4583.4074 without restraints) Performing minimization step: 1346. Total energy = 4581.8238 kcal/mol (4578.5723 without restraints) Performing minimization step: 1347. Total energy = 4576.9945 kcal/mol (4573.7443 without restraints) Performing minimization step: 1348. Total energy = 4572.1723 kcal/mol (4568.9234 without restraints) Performing minimization step: 1349. Total energy = 4567.3572 kcal/mol (4564.1097 without restraints) Performing minimization step: 1350. Total energy = 4562.5492 kcal/mol (4559.3030 without restraints) Performing minimization step: 1351. Total energy = 4557.7483 kcal/mol (4554.5034 without restraints) Performing minimization step: 1352. Total energy = 4552.9545 kcal/mol (4549.7110 without restraints) Performing minimization step: 1353. Total energy = 4548.1677 kcal/mol (4544.9255 without restraints) Performing minimization step: 1354. Total energy = 4543.3880 kcal/mol (4540.1472 without restraints) Performing minimization step: 1355. Total energy = 4538.6152 kcal/mol (4535.3757 without restraints) Performing minimization step: 1356. Total energy = 4533.8496 kcal/mol (4530.6114 without restraints) Performing minimization step: 1357. Total energy = 4529.0910 kcal/mol (4525.8541 without restraints) Performing minimization step: 1358. Total energy = 4524.3394 kcal/mol (4521.1039 without restraints) Performing minimization step: 1359. Total energy = 4519.5949 kcal/mol (4516.3606 without restraints) Performing minimization step: 1360. Total energy = 4514.8573 kcal/mol (4511.6244 without restraints) Performing minimization step: 1361. Total energy = 4510.1267 kcal/mol (4506.8951 without restraints) Performing minimization step: 1362. Total energy = 4505.4031 kcal/mol (4502.1728 without restraints) Performing minimization step: 1363. Total energy = 4500.6865 kcal/mol (4497.4575 without restraints) Performing minimization step: 1364. Total energy = 4495.9771 kcal/mol (4492.7494 without restraints) Performing minimization step: 1365. Total energy = 4491.2744 kcal/mol (4488.0480 without restraints) Performing minimization step: 1366. Total energy = 4486.5785 kcal/mol (4483.3535 without restraints) Performing minimization step: 1367. Total energy = 4481.8896 kcal/mol (4478.6659 without restraints) Performing minimization step: 1368. Total energy = 4477.2076 kcal/mol (4473.9852 without restraints) Performing minimization step: 1369. Total energy = 4472.5325 kcal/mol (4469.3114 without restraints) Performing minimization step: 1370. Total energy = 4467.8643 kcal/mol (4464.6445 without restraints) Performing minimization step: 1371. Total energy = 4463.2030 kcal/mol (4459.9844 without restraints) Performing minimization step: 1372. Total energy = 4458.5485 kcal/mol (4455.3313 without restraints) Performing minimization step: 1373. Total energy = 4453.9009 kcal/mol (4450.6850 without restraints) Performing minimization step: 1374. Total energy = 4449.2601 kcal/mol (4446.0454 without restraints) Performing minimization step: 1375. Total energy = 4444.6261 kcal/mol (4441.4128 without restraints) Performing minimization step: 1376. Total energy = 4439.9990 kcal/mol (4436.7870 without restraints) Performing minimization step: 1377. Total energy = 4435.3787 kcal/mol (4432.1680 without restraints) Performing minimization step: 1378. Total energy = 4430.7652 kcal/mol (4427.5557 without restraints) Performing minimization step: 1379. Total energy = 4426.1585 kcal/mol (4422.9503 without restraints) Performing minimization step: 1380. Total energy = 4421.5586 kcal/mol (4418.3517 without restraints) Performing minimization step: 1381. Total energy = 4416.9654 kcal/mol (4413.7598 without restraints) Performing minimization step: 1382. Total energy = 4412.3790 kcal/mol (4409.1747 without restraints) Performing minimization step: 1383. Total energy = 4407.7991 kcal/mol (4404.5961 without restraints) Performing minimization step: 1384. Total energy = 4403.2262 kcal/mol (4400.0245 without restraints) Performing minimization step: 1385. Total energy = 4398.6601 kcal/mol (4395.4596 without restraints) Performing minimization step: 1386. Total energy = 4394.1006 kcal/mol (4390.9014 without restraints) Performing minimization step: 1387. Total energy = 4389.5479 kcal/mol (4386.3500 without restraints) Performing minimization step: 1388. Total energy = 4385.0021 kcal/mol (4381.8055 without restraints) Performing minimization step: 1389. Total energy = 4380.4629 kcal/mol (4377.2676 without restraints) Performing minimization step: 1390. Total energy = 4375.9303 kcal/mol (4372.7362 without restraints) Performing minimization step: 1391. Total energy = 4371.4042 kcal/mol (4368.2115 without restraints) Performing minimization step: 1392. Total energy = 4366.8849 kcal/mol (4363.6934 without restraints) Performing minimization step: 1393. Total energy = 4362.3722 kcal/mol (4359.1820 without restraints) Performing minimization step: 1394. Total energy = 4357.8661 kcal/mol (4354.6772 without restraints) Performing minimization step: 1395. Total energy = 4353.3667 kcal/mol (4350.1790 without restraints) Performing minimization step: 1396. Total energy = 4348.8739 kcal/mol (4345.6874 without restraints) Performing minimization step: 1397. Total energy = 4344.3877 kcal/mol (4341.2025 without restraints) Performing minimization step: 1398. Total energy = 4339.9080 kcal/mol (4336.7241 without restraints) Performing minimization step: 1399. Total energy = 4335.4350 kcal/mol (4332.2524 without restraints) Performing minimization step: 1400. Total energy = 4330.9684 kcal/mol (4327.7870 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 4326.5085 kcal/mol (4323.3284 without restraints) Performing minimization step: 1402. Total energy = 4322.0552 kcal/mol (4318.8763 without restraints) Performing minimization step: 1403. Total energy = 4317.6084 kcal/mol (4314.4308 without restraints) Performing minimization step: 1404. Total energy = 4313.1682 kcal/mol (4309.9918 without restraints) Performing minimization step: 1405. Total energy = 4308.7345 kcal/mol (4305.5594 without restraints) Performing minimization step: 1406. Total energy = 4304.3073 kcal/mol (4301.1334 without restraints) Performing minimization step: 1407. Total energy = 4299.8865 kcal/mol (4296.7139 without restraints) Performing minimization step: 1408. Total energy = 4295.4723 kcal/mol (4292.3010 without restraints) Performing minimization step: 1409. Total energy = 4291.0646 kcal/mol (4287.8945 without restraints) Performing minimization step: 1410. Total energy = 4286.6634 kcal/mol (4283.4946 without restraints) Performing minimization step: 1411. Total energy = 4282.2686 kcal/mol (4279.1010 without restraints) Performing minimization step: 1412. Total energy = 4277.8803 kcal/mol (4274.7140 without restraints) Performing minimization step: 1413. Total energy = 4273.4987 kcal/mol (4270.3336 without restraints) Performing minimization step: 1414. Total energy = 4269.1234 kcal/mol (4265.9596 without restraints) Performing minimization step: 1415. Total energy = 4264.7545 kcal/mol (4261.5918 without restraints) Performing minimization step: 1416. Total energy = 4260.3919 kcal/mol (4257.2305 without restraints) Performing minimization step: 1417. Total energy = 4256.0357 kcal/mol (4252.8755 without restraints) Performing minimization step: 1418. Total energy = 4251.6859 kcal/mol (4248.5270 without restraints) Performing minimization step: 1419. Total energy = 4247.3425 kcal/mol (4244.1849 without restraints) Performing minimization step: 1420. Total energy = 4243.0055 kcal/mol (4239.8491 without restraints) Performing minimization step: 1421. Total energy = 4238.6749 kcal/mol (4235.5197 without restraints) Performing minimization step: 1422. Total energy = 4234.3504 kcal/mol (4231.1964 without restraints) Performing minimization step: 1423. Total energy = 4230.0325 kcal/mol (4226.8797 without restraints) Performing minimization step: 1424. Total energy = 4225.7209 kcal/mol (4222.5693 without restraints) Performing minimization step: 1425. Total energy = 4221.4156 kcal/mol (4218.2653 without restraints) Performing minimization step: 1426. Total energy = 4217.1167 kcal/mol (4213.9676 without restraints) Performing minimization step: 1427. Total energy = 4212.8240 kcal/mol (4209.6761 without restraints) Performing minimization step: 1428. Total energy = 4208.5377 kcal/mol (4205.3910 without restraints) Performing minimization step: 1429. Total energy = 4204.2577 kcal/mol (4201.1122 without restraints) Performing minimization step: 1430. Total energy = 4199.9839 kcal/mol (4196.8397 without restraints) Performing minimization step: 1431. Total energy = 4195.7165 kcal/mol (4192.5735 without restraints) Performing minimization step: 1432. Total energy = 4191.4552 kcal/mol (4188.3135 without restraints) Performing minimization step: 1433. Total energy = 4187.2003 kcal/mol (4184.0597 without restraints) Performing minimization step: 1434. Total energy = 4182.9515 kcal/mol (4179.8122 without restraints) Performing minimization step: 1435. Total energy = 4178.7090 kcal/mol (4175.5709 without restraints) Performing minimization step: 1436. Total energy = 4174.4728 kcal/mol (4171.3358 without restraints) Performing minimization step: 1437. Total energy = 4170.2427 kcal/mol (4167.1070 without restraints) Performing minimization step: 1438. Total energy = 4166.0189 kcal/mol (4162.8844 without restraints) Performing minimization step: 1439. Total energy = 4161.8012 kcal/mol (4158.6679 without restraints) Performing minimization step: 1440. Total energy = 4157.5897 kcal/mol (4154.4576 without restraints) Performing minimization step: 1441. Total energy = 4153.3845 kcal/mol (4150.2536 without restraints) Performing minimization step: 1442. Total energy = 4149.1853 kcal/mol (4146.0556 without restraints) Performing minimization step: 1443. Total energy = 4144.9924 kcal/mol (4141.8639 without restraints) Performing minimization step: 1444. Total energy = 4140.8056 kcal/mol (4137.6783 without restraints) Performing minimization step: 1445. Total energy = 4136.6249 kcal/mol (4133.4988 without restraints) Performing minimization step: 1446. Total energy = 4132.4503 kcal/mol (4129.3254 without restraints) Performing minimization step: 1447. Total energy = 4128.2819 kcal/mol (4125.1582 without restraints) Performing minimization step: 1448. Total energy = 4124.1195 kcal/mol (4120.9969 without restraints) Performing minimization step: 1449. Total energy = 4119.9632 kcal/mol (4116.8419 without restraints) Performing minimization step: 1450. Total energy = 4115.8131 kcal/mol (4112.6929 without restraints) Performing minimization step: 1451. Total energy = 4111.6690 kcal/mol (4108.5500 without restraints) Performing minimization step: 1452. Total energy = 4107.5310 kcal/mol (4104.4133 without restraints) Performing minimization step: 1453. Total energy = 4103.3991 kcal/mol (4100.2825 without restraints) Performing minimization step: 1454. Total energy = 4099.2733 kcal/mol (4096.1579 without restraints) Performing minimization step: 1455. Total energy = 4095.1535 kcal/mol (4092.0393 without restraints) Performing minimization step: 1456. Total energy = 4091.0397 kcal/mol (4087.9267 without restraints) Performing minimization step: 1457. Total energy = 4086.9318 kcal/mol (4083.8199 without restraints) Performing minimization step: 1458. Total energy = 4082.8300 kcal/mol (4079.7192 without restraints) Performing minimization step: 1459. Total energy = 4078.7342 kcal/mol (4075.6247 without restraints) Performing minimization step: 1460. Total energy = 4074.6444 kcal/mol (4071.5362 without restraints) Performing minimization step: 1461. Total energy = 4070.5607 kcal/mol (4067.4536 without restraints) Performing minimization step: 1462. Total energy = 4066.4830 kcal/mol (4063.3770 without restraints) Performing minimization step: 1463. Total energy = 4062.4112 kcal/mol (4059.3065 without restraints) Performing minimization step: 1464. Total energy = 4058.3454 kcal/mol (4055.2418 without restraints) Performing minimization step: 1465. Total energy = 4054.2856 kcal/mol (4051.1831 without restraints) Performing minimization step: 1466. Total energy = 4050.2317 kcal/mol (4047.1304 without restraints) Performing minimization step: 1467. Total energy = 4046.1837 kcal/mol (4043.0836 without restraints) Performing minimization step: 1468. Total energy = 4042.1417 kcal/mol (4039.0427 without restraints) Performing minimization step: 1469. Total energy = 4038.1055 kcal/mol (4035.0078 without restraints) Performing minimization step: 1470. Total energy = 4034.0753 kcal/mol (4030.9787 without restraints) Performing minimization step: 1471. Total energy = 4030.0510 kcal/mol (4026.9556 without restraints) Performing minimization step: 1472. Total energy = 4026.0326 kcal/mol (4022.9383 without restraints) Performing minimization step: 1473. Total energy = 4022.0200 kcal/mol (4018.9269 without restraints) Performing minimization step: 1474. Total energy = 4018.0138 kcal/mol (4014.9218 without restraints) Performing minimization step: 1475. Total energy = 4014.0129 kcal/mol (4010.9222 without restraints) Performing minimization step: 1476. Total energy = 4010.0184 kcal/mol (4006.9288 without restraints) Performing minimization step: 1477. Total energy = 4006.0293 kcal/mol (4002.9408 without restraints) Performing minimization step: 1478. Total energy = 4002.0460 kcal/mol (3998.9587 without restraints) Performing minimization step: 1479. Total energy = 3998.0686 kcal/mol (3994.9824 without restraints) Performing minimization step: 1480. Total energy = 3994.0970 kcal/mol (3991.0120 without restraints) Performing minimization step: 1481. Total energy = 3990.1312 kcal/mol (3987.0474 without restraints) Performing minimization step: 1482. Total energy = 3986.1712 kcal/mol (3983.0885 without restraints) Performing minimization step: 1483. Total energy = 3982.2170 kcal/mol (3979.1354 without restraints) Performing minimization step: 1484. Total energy = 3978.2685 kcal/mol (3975.1881 without restraints) Performing minimization step: 1485. Total energy = 3974.3259 kcal/mol (3971.2466 without restraints) Performing minimization step: 1486. Total energy = 3970.3885 kcal/mol (3967.3104 without restraints) Performing minimization step: 1487. Total energy = 3966.4574 kcal/mol (3963.3804 without restraints) Performing minimization step: 1488. Total energy = 3962.5320 kcal/mol (3959.4562 without restraints) Performing minimization step: 1489. Total energy = 3958.6124 kcal/mol (3955.5377 without restraints) Performing minimization step: 1490. Total energy = 3954.6985 kcal/mol (3951.6250 without restraints) Performing minimization step: 1491. Total energy = 3950.7903 kcal/mol (3947.7179 without restraints) Performing minimization step: 1492. Total energy = 3946.8879 kcal/mol (3943.8166 without restraints) Performing minimization step: 1493. Total energy = 3942.9911 kcal/mol (3939.9209 without restraints) Performing minimization step: 1494. Total energy = 3939.1000 kcal/mol (3936.0310 without restraints) Performing minimization step: 1495. Total energy = 3935.2147 kcal/mol (3932.1468 without restraints) Performing minimization step: 1496. Total energy = 3931.3350 kcal/mol (3928.2682 without restraints) Performing minimization step: 1497. Total energy = 3927.4609 kcal/mol (3924.3953 without restraints) Performing minimization step: 1498. Total energy = 3923.5926 kcal/mol (3920.5281 without restraints) Performing minimization step: 1499. Total energy = 3919.7299 kcal/mol (3916.6665 without restraints) Performing minimization step: 1500. Total energy = 3915.8728 kcal/mol (3912.8105 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 3912.0214 kcal/mol (3908.9602 without restraints) Performing minimization step: 1502. Total energy = 3908.1756 kcal/mol (3905.1155 without restraints) Performing minimization step: 1503. Total energy = 3904.3356 kcal/mol (3901.2767 without restraints) Performing minimization step: 1504. Total energy = 3900.5010 kcal/mol (3897.4432 without restraints) Performing minimization step: 1505. Total energy = 3896.6721 kcal/mol (3893.6154 without restraints) Performing minimization step: 1506. Total energy = 3892.8490 kcal/mol (3889.7935 without restraints) Performing minimization step: 1507. Total energy = 3889.0310 kcal/mol (3885.9765 without restraints) Performing minimization step: 1508. Total energy = 3885.2187 kcal/mol (3882.1654 without restraints) Performing minimization step: 1509. Total energy = 3881.4122 kcal/mol (3878.3600 without restraints) Performing minimization step: 1510. Total energy = 3877.6112 kcal/mol (3874.5601 without restraints) Performing minimization step: 1511. Total energy = 3873.8156 kcal/mol (3870.7656 without restraints) Performing minimization step: 1512. Total energy = 3870.0256 kcal/mol (3866.9768 without restraints) Performing minimization step: 1513. Total energy = 3866.2412 kcal/mol (3863.1934 without restraints) Performing minimization step: 1514. Total energy = 3862.4623 kcal/mol (3859.4156 without restraints) Performing minimization step: 1515. Total energy = 3858.6889 kcal/mol (3855.6433 without restraints) Performing minimization step: 1516. Total energy = 3854.9210 kcal/mol (3851.8765 without restraints) Performing minimization step: 1517. Total energy = 3851.1585 kcal/mol (3848.1152 without restraints) Performing minimization step: 1518. Total energy = 3847.4016 kcal/mol (3844.3594 without restraints) Performing minimization step: 1519. Total energy = 3843.6502 kcal/mol (3840.6091 without restraints) Performing minimization step: 1520. Total energy = 3839.9043 kcal/mol (3836.8642 without restraints) Performing minimization step: 1521. Total energy = 3836.1638 kcal/mol (3833.1248 without restraints) Performing minimization step: 1522. Total energy = 3832.4288 kcal/mol (3829.3909 without restraints) Performing minimization step: 1523. Total energy = 3828.6992 kcal/mol (3825.6625 without restraints) Performing minimization step: 1524. Total energy = 3824.9751 kcal/mol (3821.9394 without restraints) Performing minimization step: 1525. Total energy = 3821.2564 kcal/mol (3818.2218 without restraints) Performing minimization step: 1526. Total energy = 3817.5431 kcal/mol (3814.5097 without restraints) Performing minimization step: 1527. Total energy = 3813.8353 kcal/mol (3810.8029 without restraints) Performing minimization step: 1528. Total energy = 3810.1328 kcal/mol (3807.1016 without restraints) Performing minimization step: 1529. Total energy = 3806.4358 kcal/mol (3803.4056 without restraints) Performing minimization step: 1530. Total energy = 3802.7442 kcal/mol (3799.7151 without restraints) Performing minimization step: 1531. Total energy = 3799.0579 kcal/mol (3796.0299 without restraints) Performing minimization step: 1532. Total energy = 3795.3770 kcal/mol (3792.3501 without restraints) Performing minimization step: 1533. Total energy = 3791.7017 kcal/mol (3788.6759 without restraints) Performing minimization step: 1534. Total energy = 3788.0316 kcal/mol (3785.0068 without restraints) Performing minimization step: 1535. Total energy = 3784.3668 kcal/mol (3781.3431 without restraints) Performing minimization step: 1536. Total energy = 3780.7072 kcal/mol (3777.6845 without restraints) Performing minimization step: 1537. Total energy = 3777.0531 kcal/mol (3774.0315 without restraints) Performing minimization step: 1538. Total energy = 3773.4043 kcal/mol (3770.3838 without restraints) Performing minimization step: 1539. Total energy = 3769.7610 kcal/mol (3766.7416 without restraints) Performing minimization step: 1540. Total energy = 3766.1227 kcal/mol (3763.1043 without restraints) Performing minimization step: 1541. Total energy = 3762.4898 kcal/mol (3759.4725 without restraints) Performing minimization step: 1542. Total energy = 3758.8622 kcal/mol (3755.8460 without restraints) Performing minimization step: 1543. Total energy = 3755.2399 kcal/mol (3752.2248 without restraints) Performing minimization step: 1544. Total energy = 3751.6229 kcal/mol (3748.6089 without restraints) Performing minimization step: 1545. Total energy = 3748.0115 kcal/mol (3744.9985 without restraints) Performing minimization step: 1546. Total energy = 3744.4050 kcal/mol (3741.3931 without restraints) Performing minimization step: 1547. Total energy = 3740.8038 kcal/mol (3737.7930 without restraints) Performing minimization step: 1548. Total energy = 3737.2079 kcal/mol (3734.1981 without restraints) Performing minimization step: 1549. Total energy = 3733.6172 kcal/mol (3730.6085 without restraints) Performing minimization step: 1550. Total energy = 3730.0318 kcal/mol (3727.0241 without restraints) Performing minimization step: 1551. Total energy = 3726.4515 kcal/mol (3723.4450 without restraints) Performing minimization step: 1552. Total energy = 3722.8765 kcal/mol (3719.8710 without restraints) Performing minimization step: 1553. Total energy = 3719.3065 kcal/mol (3716.3021 without restraints) Performing minimization step: 1554. Total energy = 3715.7420 kcal/mol (3712.7387 without restraints) Performing minimization step: 1555. Total energy = 3712.1827 kcal/mol (3709.1803 without restraints) Performing minimization step: 1556. Total energy = 3708.6285 kcal/mol (3705.6272 without restraints) Performing minimization step: 1557. Total energy = 3705.0794 kcal/mol (3702.0792 without restraints) Performing minimization step: 1558. Total energy = 3701.5356 kcal/mol (3698.5364 without restraints) Performing minimization step: 1559. Total energy = 3697.9968 kcal/mol (3694.9987 without restraints) Performing minimization step: 1560. Total energy = 3694.4633 kcal/mol (3691.4662 without restraints) Performing minimization step: 1561. Total energy = 3690.9349 kcal/mol (3687.9388 without restraints) Performing minimization step: 1562. Total energy = 3687.4116 kcal/mol (3684.4166 without restraints) Performing minimization step: 1563. Total energy = 3683.8935 kcal/mol (3680.8995 without restraints) Performing minimization step: 1564. Total energy = 3680.3805 kcal/mol (3677.3876 without restraints) Performing minimization step: 1565. Total energy = 3676.8726 kcal/mol (3673.8807 without restraints) Performing minimization step: 1566. Total energy = 3673.3698 kcal/mol (3670.3790 without restraints) Performing minimization step: 1567. Total energy = 3669.8721 kcal/mol (3666.8823 without restraints) Performing minimization step: 1568. Total energy = 3666.3795 kcal/mol (3663.3908 without restraints) Performing minimization step: 1569. Total energy = 3662.8920 kcal/mol (3659.9043 without restraints) Performing minimization step: 1570. Total energy = 3659.4098 kcal/mol (3656.4232 without restraints) Performing minimization step: 1571. Total energy = 3655.9325 kcal/mol (3652.9468 without restraints) Performing minimization step: 1572. Total energy = 3652.4600 kcal/mol (3649.4754 without restraints) Performing minimization step: 1573. Total energy = 3648.9927 kcal/mol (3646.0092 without restraints) Performing minimization step: 1574. Total energy = 3645.5306 kcal/mol (3642.5480 without restraints) Performing minimization step: 1575. Total energy = 3642.0732 kcal/mol (3639.0917 without restraints) Performing minimization step: 1576. Total energy = 3638.6210 kcal/mol (3635.6404 without restraints) Performing minimization step: 1577. Total energy = 3635.1738 kcal/mol (3632.1943 without restraints) Performing minimization step: 1578. Total energy = 3631.7317 kcal/mol (3628.7533 without restraints) Performing minimization step: 1579. Total energy = 3628.2946 kcal/mol (3625.3172 without restraints) Performing minimization step: 1580. Total energy = 3624.8626 kcal/mol (3621.8862 without restraints) Performing minimization step: 1581. Total energy = 3621.4355 kcal/mol (3618.4602 without restraints) Performing minimization step: 1582. Total energy = 3618.0136 kcal/mol (3615.0393 without restraints) Performing minimization step: 1583. Total energy = 3614.5965 kcal/mol (3611.6232 without restraints) Performing minimization step: 1584. Total energy = 3611.1844 kcal/mol (3608.2121 without restraints) Performing minimization step: 1585. Total energy = 3607.7772 kcal/mol (3604.8060 without restraints) Performing minimization step: 1586. Total energy = 3604.3750 kcal/mol (3601.4048 without restraints) Performing minimization step: 1587. Total energy = 3600.9777 kcal/mol (3598.0085 without restraints) Performing minimization step: 1588. Total energy = 3597.5854 kcal/mol (3594.6172 without restraints) Performing minimization step: 1589. Total energy = 3594.1980 kcal/mol (3591.2309 without restraints) Performing minimization step: 1590. Total energy = 3590.8156 kcal/mol (3587.8494 without restraints) Performing minimization step: 1591. Total energy = 3587.4380 kcal/mol (3584.4729 without restraints) Performing minimization step: 1592. Total energy = 3584.0654 kcal/mol (3581.1013 without restraints) Performing minimization step: 1593. Total energy = 3580.6977 kcal/mol (3577.7346 without restraints) Performing minimization step: 1594. Total energy = 3577.3349 kcal/mol (3574.3728 without restraints) Performing minimization step: 1595. Total energy = 3573.9770 kcal/mol (3571.0159 without restraints) Performing minimization step: 1596. Total energy = 3570.6239 kcal/mol (3567.6638 without restraints) Performing minimization step: 1597. Total energy = 3567.2758 kcal/mol (3564.3167 without restraints) Performing minimization step: 1598. Total energy = 3563.9325 kcal/mol (3560.9744 without restraints) Performing minimization step: 1599. Total energy = 3560.5941 kcal/mol (3557.6370 without restraints) Performing minimization step: 1600. Total energy = 3557.2605 kcal/mol (3554.3045 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 3553.9318 kcal/mol (3550.9767 without restraints) Performing minimization step: 1602. Total energy = 3550.6079 kcal/mol (3547.6538 without restraints) Performing minimization step: 1603. Total energy = 3547.2889 kcal/mol (3544.3358 without restraints) Performing minimization step: 1604. Total energy = 3543.9746 kcal/mol (3541.0225 without restraints) Performing minimization step: 1605. Total energy = 3540.6652 kcal/mol (3537.7141 without restraints) Performing minimization step: 1606. Total energy = 3537.3606 kcal/mol (3534.4105 without restraints) Performing minimization step: 1607. Total energy = 3534.0609 kcal/mol (3531.1119 without restraints) Performing minimization step: 1608. Total energy = 3530.7660 kcal/mol (3527.8179 without restraints) Performing minimization step: 1609. Total energy = 3527.4758 kcal/mol (3524.5286 without restraints) Performing minimization step: 1610. Total energy = 3524.1904 kcal/mol (3521.2442 without restraints) Performing minimization step: 1611. Total energy = 3520.9097 kcal/mol (3517.9646 without restraints) Performing minimization step: 1612. Total energy = 3517.6338 kcal/mol (3514.6897 without restraints) Performing minimization step: 1613. Total energy = 3514.3627 kcal/mol (3511.4195 without restraints) Performing minimization step: 1614. Total energy = 3511.0963 kcal/mol (3508.1542 without restraints) Performing minimization step: 1615. Total energy = 3507.8347 kcal/mol (3504.8935 without restraints) Performing minimization step: 1616. Total energy = 3504.5778 kcal/mol (3501.6376 without restraints) Performing minimization step: 1617. Total energy = 3501.3258 kcal/mol (3498.3865 without restraints) Performing minimization step: 1618. Total energy = 3498.0783 kcal/mol (3495.1400 without restraints) Performing minimization step: 1619. Total energy = 3494.8356 kcal/mol (3491.8983 without restraints) Performing minimization step: 1620. Total energy = 3491.5976 kcal/mol (3488.6613 without restraints) Performing minimization step: 1621. Total energy = 3488.3643 kcal/mol (3485.4290 without restraints) Performing minimization step: 1622. Total energy = 3485.1358 kcal/mol (3482.2016 without restraints) Performing minimization step: 1623. Total energy = 3481.9120 kcal/mol (3478.9787 without restraints) Performing minimization step: 1624. Total energy = 3478.6930 kcal/mol (3475.7606 without restraints) Performing minimization step: 1625. Total energy = 3475.4785 kcal/mol (3472.5473 without restraints) Performing minimization step: 1626. Total energy = 3472.2688 kcal/mol (3469.3384 without restraints) Performing minimization step: 1627. Total energy = 3469.0636 kcal/mol (3466.1341 without restraints) Performing minimization step: 1628. Total energy = 3465.8630 kcal/mol (3462.9345 without restraints) Performing minimization step: 1629. Total energy = 3462.6671 kcal/mol (3459.7396 without restraints) Performing minimization step: 1630. Total energy = 3459.4758 kcal/mol (3456.5493 without restraints) Performing minimization step: 1631. Total energy = 3456.2892 kcal/mol (3453.3636 without restraints) Performing minimization step: 1632. Total energy = 3453.1074 kcal/mol (3450.1828 without restraints) Performing minimization step: 1633. Total energy = 3449.9300 kcal/mol (3447.0064 without restraints) Performing minimization step: 1634. Total energy = 3446.7573 kcal/mol (3443.8346 without restraints) Performing minimization step: 1635. Total energy = 3443.5891 kcal/mol (3440.6674 without restraints) Performing minimization step: 1636. Total energy = 3440.4256 kcal/mol (3437.5048 without restraints) Performing minimization step: 1637. Total energy = 3437.2666 kcal/mol (3434.3468 without restraints) Performing minimization step: 1638. Total energy = 3434.1122 kcal/mol (3431.1934 without restraints) Performing minimization step: 1639. Total energy = 3430.9626 kcal/mol (3428.0448 without restraints) Performing minimization step: 1640. Total energy = 3427.8174 kcal/mol (3424.9005 without restraints) Performing minimization step: 1641. Total energy = 3424.6768 kcal/mol (3421.7608 without restraints) Performing minimization step: 1642. Total energy = 3421.5407 kcal/mol (3418.6257 without restraints) Performing minimization step: 1643. Total energy = 3418.4092 kcal/mol (3415.4951 without restraints) Performing minimization step: 1644. Total energy = 3415.2818 kcal/mol (3412.3687 without restraints) Performing minimization step: 1645. Total energy = 3412.1595 kcal/mol (3409.2474 without restraints) Performing minimization step: 1646. Total energy = 3409.0416 kcal/mol (3406.1304 without restraints) Performing minimization step: 1647. Total energy = 3405.9282 kcal/mol (3403.0179 without restraints) Performing minimization step: 1648. Total energy = 3402.8193 kcal/mol (3399.9100 without restraints) Performing minimization step: 1649. Total energy = 3399.7150 kcal/mol (3396.8068 without restraints) Performing minimization step: 1650. Total energy = 3396.6153 kcal/mol (3393.7079 without restraints) Performing minimization step: 1651. Total energy = 3393.5199 kcal/mol (3390.6135 without restraints) Performing minimization step: 1652. Total energy = 3390.4291 kcal/mol (3387.5236 without restraints) Performing minimization step: 1653. Total energy = 3387.3427 kcal/mol (3384.4381 without restraints) Performing minimization step: 1654. Total energy = 3384.2608 kcal/mol (3381.3572 without restraints) Performing minimization step: 1655. Total energy = 3381.1834 kcal/mol (3378.2807 without restraints) Performing minimization step: 1656. Total energy = 3378.1104 kcal/mol (3375.2086 without restraints) Performing minimization step: 1657. Total energy = 3375.0419 kcal/mol (3372.1411 without restraints) Performing minimization step: 1658. Total energy = 3371.9778 kcal/mol (3369.0780 without restraints) Performing minimization step: 1659. Total energy = 3368.9182 kcal/mol (3366.0193 without restraints) Performing minimization step: 1660. Total energy = 3365.8633 kcal/mol (3362.9653 without restraints) Performing minimization step: 1661. Total energy = 3362.8125 kcal/mol (3359.9155 without restraints) Performing minimization step: 1662. Total energy = 3359.7662 kcal/mol (3356.8701 without restraints) Performing minimization step: 1663. Total energy = 3356.7243 kcal/mol (3353.8291 without restraints) Performing minimization step: 1664. Total energy = 3353.6868 kcal/mol (3350.7926 without restraints) Performing minimization step: 1665. Total energy = 3350.6536 kcal/mol (3347.7603 without restraints) Performing minimization step: 1666. Total energy = 3347.6249 kcal/mol (3344.7325 without restraints) Performing minimization step: 1667. Total energy = 3344.6006 kcal/mol (3341.7092 without restraints) Performing minimization step: 1668. Total energy = 3341.5807 kcal/mol (3338.6902 without restraints) Performing minimization step: 1669. Total energy = 3338.5655 kcal/mol (3335.6759 without restraints) Performing minimization step: 1670. Total energy = 3335.5543 kcal/mol (3332.6656 without restraints) Performing minimization step: 1671. Total energy = 3332.5476 kcal/mol (3329.6598 without restraints) Performing minimization step: 1672. Total energy = 3329.5451 kcal/mol (3326.6583 without restraints) Performing minimization step: 1673. Total energy = 3326.5473 kcal/mol (3323.6614 without restraints) Performing minimization step: 1674. Total energy = 3323.5536 kcal/mol (3320.6686 without restraints) Performing minimization step: 1675. Total energy = 3320.5642 kcal/mol (3317.6801 without restraints) Performing minimization step: 1676. Total energy = 3317.5792 kcal/mol (3314.6960 without restraints) Performing minimization step: 1677. Total energy = 3314.5985 kcal/mol (3311.7162 without restraints) Performing minimization step: 1678. Total energy = 3311.6221 kcal/mol (3308.7408 without restraints) Performing minimization step: 1679. Total energy = 3308.6500 kcal/mol (3305.7696 without restraints) Performing minimization step: 1680. Total energy = 3305.6823 kcal/mol (3302.8028 without restraints) Performing minimization step: 1681. Total energy = 3302.7188 kcal/mol (3299.8403 without restraints) Performing minimization step: 1682. Total energy = 3299.7597 kcal/mol (3296.8820 without restraints) Performing minimization step: 1683. Total energy = 3296.8048 kcal/mol (3293.9281 without restraints) Performing minimization step: 1684. Total energy = 3293.8544 kcal/mol (3290.9786 without restraints) Performing minimization step: 1685. Total energy = 3290.9081 kcal/mol (3288.0332 without restraints) Performing minimization step: 1686. Total energy = 3287.9661 kcal/mol (3285.0921 without restraints) Performing minimization step: 1687. Total energy = 3285.0283 kcal/mol (3282.1552 without restraints) Performing minimization step: 1688. Total energy = 3282.0948 kcal/mol (3279.2226 without restraints) Performing minimization step: 1689. Total energy = 3279.1656 kcal/mol (3276.2945 without restraints) Performing minimization step: 1690. Total energy = 3276.2407 kcal/mol (3273.3704 without restraints) Performing minimization step: 1691. Total energy = 3273.3200 kcal/mol (3270.4505 without restraints) Performing minimization step: 1692. Total energy = 3270.4034 kcal/mol (3267.5349 without restraints) Performing minimization step: 1693. Total energy = 3267.4911 kcal/mol (3264.6235 without restraints) Performing minimization step: 1694. Total energy = 3264.5832 kcal/mol (3261.7165 without restraints) Performing minimization step: 1695. Total energy = 3261.6794 kcal/mol (3258.8135 without restraints) Performing minimization step: 1696. Total energy = 3258.7797 kcal/mol (3255.9147 without restraints) Performing minimization step: 1697. Total energy = 3255.8842 kcal/mol (3253.0202 without restraints) Performing minimization step: 1698. Total energy = 3252.9930 kcal/mol (3250.1298 without restraints) Performing minimization step: 1699. Total energy = 3250.1061 kcal/mol (3247.2438 without restraints) Performing minimization step: 1700. Total energy = 3247.2232 kcal/mol (3244.3619 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 3244.3445 kcal/mol (3241.4840 without restraints) Performing minimization step: 1702. Total energy = 3241.4700 kcal/mol (3238.6104 without restraints) Performing minimization step: 1703. Total energy = 3238.5996 kcal/mol (3235.7409 without restraints) Performing minimization step: 1704. Total energy = 3235.7334 kcal/mol (3232.8756 without restraints) Performing minimization step: 1705. Total energy = 3232.8713 kcal/mol (3230.0144 without restraints) Performing minimization step: 1706. Total energy = 3230.0131 kcal/mol (3227.1571 without restraints) Performing minimization step: 1707. Total energy = 3227.1593 kcal/mol (3224.3042 without restraints) Performing minimization step: 1708. Total energy = 3224.3097 kcal/mol (3221.4554 without restraints) Performing minimization step: 1709. Total energy = 3221.4641 kcal/mol (3218.6108 without restraints) Performing minimization step: 1710. Total energy = 3218.6227 kcal/mol (3215.7702 without restraints) Performing minimization step: 1711. Total energy = 3215.7854 kcal/mol (3212.9338 without restraints) Performing minimization step: 1712. Total energy = 3212.9523 kcal/mol (3210.1016 without restraints) Performing minimization step: 1713. Total energy = 3210.1232 kcal/mol (3207.2734 without restraints) Performing minimization step: 1714. Total energy = 3207.2982 kcal/mol (3204.4493 without restraints) Performing minimization step: 1715. Total energy = 3204.4773 kcal/mol (3201.6293 without restraints) Performing minimization step: 1716. Total energy = 3201.6605 kcal/mol (3198.8134 without restraints) Performing minimization step: 1717. Total energy = 3198.8478 kcal/mol (3196.0015 without restraints) Performing minimization step: 1718. Total energy = 3196.0392 kcal/mol (3193.1938 without restraints) Performing minimization step: 1719. Total energy = 3193.2346 kcal/mol (3190.3901 without restraints) Performing minimization step: 1720. Total energy = 3190.4341 kcal/mol (3187.5904 without restraints) Performing minimization step: 1721. Total energy = 3187.6376 kcal/mol (3184.7948 without restraints) Performing minimization step: 1722. Total energy = 3184.8452 kcal/mol (3182.0033 without restraints) Performing minimization step: 1723. Total energy = 3182.0568 kcal/mol (3179.2157 without restraints) Performing minimization step: 1724. Total energy = 3179.2724 kcal/mol (3176.4323 without restraints) Performing minimization step: 1725. Total energy = 3176.4924 kcal/mol (3173.6531 without restraints) Performing minimization step: 1726. Total energy = 3173.7161 kcal/mol (3170.8777 without restraints) Performing minimization step: 1727. Total energy = 3170.9438 kcal/mol (3168.1063 without restraints) Performing minimization step: 1728. Total energy = 3168.1756 kcal/mol (3165.3389 without restraints) Performing minimization step: 1729. Total energy = 3165.4113 kcal/mol (3162.5755 without restraints) Performing minimization step: 1730. Total energy = 3162.6511 kcal/mol (3159.8162 without restraints) Performing minimization step: 1731. Total energy = 3159.8948 kcal/mol (3157.0608 without restraints) Performing minimization step: 1732. Total energy = 3157.1426 kcal/mol (3154.3094 without restraints) Performing minimization step: 1733. Total energy = 3154.3944 kcal/mol (3151.5620 without restraints) Performing minimization step: 1734. Total energy = 3151.6501 kcal/mol (3148.8186 without restraints) Performing minimization step: 1735. Total energy = 3148.9097 kcal/mol (3146.0791 without restraints) Performing minimization step: 1736. Total energy = 3146.1734 kcal/mol (3143.3436 without restraints) Performing minimization step: 1737. Total energy = 3143.4410 kcal/mol (3140.6121 without restraints) Performing minimization step: 1738. Total energy = 3140.7125 kcal/mol (3137.8845 without restraints) Performing minimization step: 1739. Total energy = 3137.9881 kcal/mol (3135.1609 without restraints) Performing minimization step: 1740. Total energy = 3135.2675 kcal/mol (3132.4412 without restraints) Performing minimization step: 1741. Total energy = 3132.5509 kcal/mol (3129.7255 without restraints) Performing minimization step: 1742. Total energy = 3129.8384 kcal/mol (3127.0138 without restraints) Performing minimization step: 1743. Total energy = 3127.1297 kcal/mol (3124.3059 without restraints) Performing minimization step: 1744. Total energy = 3124.4248 kcal/mol (3121.6019 without restraints) Performing minimization step: 1745. Total energy = 3121.7239 kcal/mol (3118.9019 without restraints) Performing minimization step: 1746. Total energy = 3119.0270 kcal/mol (3116.2061 without restraints) Performing minimization step: 1747. Total energy = 3116.3341 kcal/mol (3113.5138 without restraints) Performing minimization step: 1748. Total energy = 3113.6449 kcal/mol (3110.8254 without restraints) Performing minimization step: 1749. Total energy = 3110.9595 kcal/mol (3108.1409 without restraints) Performing minimization step: 1750. Total energy = 3108.2781 kcal/mol (3105.4603 without restraints) Performing minimization step: 1751. Total energy = 3105.6004 kcal/mol (3102.7835 without restraints) Performing minimization step: 1752. Total energy = 3102.9267 kcal/mol (3100.1107 without restraints) Performing minimization step: 1753. Total energy = 3100.2569 kcal/mol (3097.4417 without restraints) Performing minimization step: 1754. Total energy = 3097.5909 kcal/mol (3094.7765 without restraints) Performing minimization step: 1755. Total energy = 3094.9288 kcal/mol (3092.1153 without restraints) Performing minimization step: 1756. Total energy = 3092.2705 kcal/mol (3089.4578 without restraints) Performing minimization step: 1757. Total energy = 3089.6161 kcal/mol (3086.8042 without restraints) Performing minimization step: 1758. Total energy = 3086.9653 kcal/mol (3084.1543 without restraints) Performing minimization step: 1759. Total energy = 3084.3185 kcal/mol (3081.5084 without restraints) Performing minimization step: 1760. Total energy = 3081.6755 kcal/mol (3078.8663 without restraints) Performing minimization step: 1761. Total energy = 3079.0364 kcal/mol (3076.2280 without restraints) Performing minimization step: 1762. Total energy = 3076.4011 kcal/mol (3073.5935 without restraints) Performing minimization step: 1763. Total energy = 3073.7696 kcal/mol (3070.9629 without restraints) Performing minimization step: 1764. Total energy = 3071.1419 kcal/mol (3068.3360 without restraints) Performing minimization step: 1765. Total energy = 3068.5180 kcal/mol (3065.7129 without restraints) Performing minimization step: 1766. Total energy = 3065.8979 kcal/mol (3063.0937 without restraints) Performing minimization step: 1767. Total energy = 3063.2816 kcal/mol (3060.4782 without restraints) Performing minimization step: 1768. Total energy = 3060.6691 kcal/mol (3057.8665 without restraints) Performing minimization step: 1769. Total energy = 3058.0603 kcal/mol (3055.2585 without restraints) Performing minimization step: 1770. Total energy = 3055.4553 kcal/mol (3052.6544 without restraints) Performing minimization step: 1771. Total energy = 3052.8541 kcal/mol (3050.0540 without restraints) Performing minimization step: 1772. Total energy = 3050.2564 kcal/mol (3047.4571 without restraints) Performing minimization step: 1773. Total energy = 3047.6627 kcal/mol (3044.8642 without restraints) Performing minimization step: 1774. Total energy = 3045.0729 kcal/mol (3042.2753 without restraints) Performing minimization step: 1775. Total energy = 3042.4866 kcal/mol (3039.6899 without restraints) Performing minimization step: 1776. Total energy = 3039.9042 kcal/mol (3037.1084 without restraints) Performing minimization step: 1777. Total energy = 3037.3256 kcal/mol (3034.5305 without restraints) Performing minimization step: 1778. Total energy = 3034.7505 kcal/mol (3031.9563 without restraints) Performing minimization step: 1779. Total energy = 3032.1794 kcal/mol (3029.3859 without restraints) Performing minimization step: 1780. Total energy = 3029.6117 kcal/mol (3026.8191 without restraints) Performing minimization step: 1781. Total energy = 3027.0478 kcal/mol (3024.2560 without restraints) Performing minimization step: 1782. Total energy = 3024.4879 kcal/mol (3021.6969 without restraints) Performing minimization step: 1783. Total energy = 3021.9313 kcal/mol (3019.1412 without restraints) Performing minimization step: 1784. Total energy = 3019.3783 kcal/mol (3016.5890 without restraints) Performing minimization step: 1785. Total energy = 3016.8292 kcal/mol (3014.0407 without restraints) Performing minimization step: 1786. Total energy = 3014.2837 kcal/mol (3011.4961 without restraints) Performing minimization step: 1787. Total energy = 3011.7419 kcal/mol (3008.9551 without restraints) Performing minimization step: 1788. Total energy = 3009.2038 kcal/mol (3006.4178 without restraints) Performing minimization step: 1789. Total energy = 3006.6696 kcal/mol (3003.8844 without restraints) Performing minimization step: 1790. Total energy = 3004.1388 kcal/mol (3001.3544 without restraints) Performing minimization step: 1791. Total energy = 3001.6116 kcal/mol (2998.8281 without restraints) Performing minimization step: 1792. Total energy = 2999.0885 kcal/mol (2996.3058 without restraints) Performing minimization step: 1793. Total energy = 2996.5687 kcal/mol (2993.7868 without restraints) Performing minimization step: 1794. Total energy = 2994.0523 kcal/mol (2991.2711 without restraints) Performing minimization step: 1795. Total energy = 2991.5396 kcal/mol (2988.7593 without restraints) Performing minimization step: 1796. Total energy = 2989.0306 kcal/mol (2986.2512 without restraints) Performing minimization step: 1797. Total energy = 2986.5253 kcal/mol (2983.7466 without restraints) Performing minimization step: 1798. Total energy = 2984.0235 kcal/mol (2981.2457 without restraints) Performing minimization step: 1799. Total energy = 2981.5254 kcal/mol (2978.7484 without restraints) Performing minimization step: 1800. Total energy = 2979.0309 kcal/mol (2976.2546 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 2976.5399 kcal/mol (2973.7645 without restraints) Performing minimization step: 1802. Total energy = 2974.0526 kcal/mol (2971.2780 without restraints) Performing minimization step: 1803. Total energy = 2971.5688 kcal/mol (2968.7950 without restraints) Performing minimization step: 1804. Total energy = 2969.0886 kcal/mol (2966.3156 without restraints) Performing minimization step: 1805. Total energy = 2966.6120 kcal/mol (2963.8398 without restraints) Performing minimization step: 1806. Total energy = 2964.1390 kcal/mol (2961.3676 without restraints) Performing minimization step: 1807. Total energy = 2961.6697 kcal/mol (2958.8991 without restraints) Performing minimization step: 1808. Total energy = 2959.2038 kcal/mol (2956.4340 without restraints) Performing minimization step: 1809. Total energy = 2956.7415 kcal/mol (2953.9725 without restraints) Performing minimization step: 1810. Total energy = 2954.2827 kcal/mol (2951.5145 without restraints) Performing minimization step: 1811. Total energy = 2951.8274 kcal/mol (2949.0600 without restraints) Performing minimization step: 1812. Total energy = 2949.3756 kcal/mol (2946.6091 without restraints) Performing minimization step: 1813. Total energy = 2946.9274 kcal/mol (2944.1617 without restraints) Performing minimization step: 1814. Total energy = 2944.4827 kcal/mol (2941.7178 without restraints) Performing minimization step: 1815. Total energy = 2942.0416 kcal/mol (2939.2774 without restraints) Performing minimization step: 1816. Total energy = 2939.6039 kcal/mol (2936.8406 without restraints) Performing minimization step: 1817. Total energy = 2937.1698 kcal/mol (2934.4073 without restraints) Performing minimization step: 1818. Total energy = 2934.7392 kcal/mol (2931.9774 without restraints) Performing minimization step: 1819. Total energy = 2932.3120 kcal/mol (2929.5511 without restraints) Performing minimization step: 1820. Total energy = 2929.8884 kcal/mol (2927.1282 without restraints) Performing minimization step: 1821. Total energy = 2927.4682 kcal/mol (2924.7089 without restraints) Performing minimization step: 1822. Total energy = 2925.0516 kcal/mol (2922.2931 without restraints) Performing minimization step: 1823. Total energy = 2922.6384 kcal/mol (2919.8806 without restraints) Performing minimization step: 1824. Total energy = 2920.2287 kcal/mol (2917.4717 without restraints) Performing minimization step: 1825. Total energy = 2917.8224 kcal/mol (2915.0662 without restraints) Performing minimization step: 1826. Total energy = 2915.4195 kcal/mol (2912.6642 without restraints) Performing minimization step: 1827. Total energy = 2913.0202 kcal/mol (2910.2656 without restraints) Performing minimization step: 1828. Total energy = 2910.6243 kcal/mol (2907.8705 without restraints) Performing minimization step: 1829. Total energy = 2908.2320 kcal/mol (2905.4790 without restraints) Performing minimization step: 1830. Total energy = 2905.8430 kcal/mol (2903.0908 without restraints) Performing minimization step: 1831. Total energy = 2903.4575 kcal/mol (2900.7061 without restraints) Performing minimization step: 1832. Total energy = 2901.0757 kcal/mol (2898.3251 without restraints) Performing minimization step: 1833. Total energy = 2898.6970 kcal/mol (2895.9472 without restraints) Performing minimization step: 1834. Total energy = 2896.3217 kcal/mol (2893.5727 without restraints) Performing minimization step: 1835. Total energy = 2893.9498 kcal/mol (2891.2016 without restraints) Performing minimization step: 1836. Total energy = 2891.5813 kcal/mol (2888.8339 without restraints) Performing minimization step: 1837. Total energy = 2889.2163 kcal/mol (2886.4696 without restraints) Performing minimization step: 1838. Total energy = 2886.8546 kcal/mol (2884.1087 without restraints) Performing minimization step: 1839. Total energy = 2884.4963 kcal/mol (2881.7512 without restraints) Performing minimization step: 1840. Total energy = 2882.1414 kcal/mol (2879.3971 without restraints) Performing minimization step: 1841. Total energy = 2879.7899 kcal/mol (2877.0464 without restraints) Performing minimization step: 1842. Total energy = 2877.4417 kcal/mol (2874.6990 without restraints) Performing minimization step: 1843. Total energy = 2875.0970 kcal/mol (2872.3550 without restraints) Performing minimization step: 1844. Total energy = 2872.7556 kcal/mol (2870.0144 without restraints) Performing minimization step: 1845. Total energy = 2870.4175 kcal/mol (2867.6772 without restraints) Performing minimization step: 1846. Total energy = 2868.0828 kcal/mol (2865.3433 without restraints) Performing minimization step: 1847. Total energy = 2865.7515 kcal/mol (2863.0127 without restraints) Performing minimization step: 1848. Total energy = 2863.4237 kcal/mol (2860.6857 without restraints) Performing minimization step: 1849. Total energy = 2861.0988 kcal/mol (2858.3616 without restraints) Performing minimization step: 1850. Total energy = 2858.7775 kcal/mol (2856.0411 without restraints) Performing minimization step: 1851. Total energy = 2856.4597 kcal/mol (2853.7241 without restraints) Performing minimization step: 1852. Total energy = 2854.1451 kcal/mol (2851.4102 without restraints) Performing minimization step: 1853. Total energy = 2851.8337 kcal/mol (2849.0996 without restraints) Performing minimization step: 1854. Total energy = 2849.5257 kcal/mol (2846.7923 without restraints) Performing minimization step: 1855. Total energy = 2847.2210 kcal/mol (2844.4884 without restraints) Performing minimization step: 1856. Total energy = 2844.9195 kcal/mol (2842.1877 without restraints) Performing minimization step: 1857. Total energy = 2842.6214 kcal/mol (2839.8904 without restraints) Performing minimization step: 1858. Total energy = 2840.3266 kcal/mol (2837.5963 without restraints) Performing minimization step: 1859. Total energy = 2838.0350 kcal/mol (2835.3056 without restraints) Performing minimization step: 1860. Total energy = 2835.7470 kcal/mol (2833.0183 without restraints) Performing minimization step: 1861. Total energy = 2833.4620 kcal/mol (2830.7341 without restraints) Performing minimization step: 1862. Total energy = 2831.1803 kcal/mol (2828.4532 without restraints) Performing minimization step: 1863. Total energy = 2828.9019 kcal/mol (2826.1756 without restraints) Performing minimization step: 1864. Total energy = 2826.6267 kcal/mol (2823.9011 without restraints) Performing minimization step: 1865. Total energy = 2824.3548 kcal/mol (2821.6300 without restraints) Performing minimization step: 1866. Total energy = 2822.0861 kcal/mol (2819.3620 without restraints) Performing minimization step: 1867. Total energy = 2819.8207 kcal/mol (2817.0974 without restraints) Performing minimization step: 1868. Total energy = 2817.5585 kcal/mol (2814.8360 without restraints) Performing minimization step: 1869. Total energy = 2815.2996 kcal/mol (2812.5778 without restraints) Performing minimization step: 1870. Total energy = 2813.0438 kcal/mol (2810.3229 without restraints) Performing minimization step: 1871. Total energy = 2810.7913 kcal/mol (2808.0712 without restraints) Performing minimization step: 1872. Total energy = 2808.5421 kcal/mol (2805.8227 without restraints) Performing minimization step: 1873. Total energy = 2806.2960 kcal/mol (2803.5774 without restraints) Performing minimization step: 1874. Total energy = 2804.0532 kcal/mol (2801.3353 without restraints) Performing minimization step: 1875. Total energy = 2801.8135 kcal/mol (2799.0964 without restraints) Performing minimization step: 1876. Total energy = 2799.5771 kcal/mol (2796.8607 without restraints) Performing minimization step: 1877. Total energy = 2797.3438 kcal/mol (2794.6282 without restraints) Performing minimization step: 1878. Total energy = 2795.1138 kcal/mol (2792.3989 without restraints) Performing minimization step: 1879. Total energy = 2792.8869 kcal/mol (2790.1728 without restraints) Performing minimization step: 1880. Total energy = 2790.6632 kcal/mol (2787.9499 without restraints) Performing minimization step: 1881. Total energy = 2788.4429 kcal/mol (2785.7304 without restraints) Performing minimization step: 1882. Total energy = 2786.2256 kcal/mol (2783.5138 without restraints) Performing minimization step: 1883. Total energy = 2784.0116 kcal/mol (2781.3006 without restraints) Performing minimization step: 1884. Total energy = 2781.8006 kcal/mol (2779.0904 without restraints) Performing minimization step: 1885. Total energy = 2779.5927 kcal/mol (2776.8832 without restraints) Performing minimization step: 1886. Total energy = 2777.3880 kcal/mol (2774.6793 without restraints) Performing minimization step: 1887. Total energy = 2775.1864 kcal/mol (2772.4784 without restraints) Performing minimization step: 1888. Total energy = 2772.9879 kcal/mol (2770.2808 without restraints) Performing minimization step: 1889. Total energy = 2770.7928 kcal/mol (2768.0864 without restraints) Performing minimization step: 1890. Total energy = 2768.6007 kcal/mol (2765.8950 without restraints) Performing minimization step: 1891. Total energy = 2766.4116 kcal/mol (2763.7067 without restraints) Performing minimization step: 1892. Total energy = 2764.2257 kcal/mol (2761.5215 without restraints) Performing minimization step: 1893. Total energy = 2762.0429 kcal/mol (2759.3395 without restraints) Performing minimization step: 1894. Total energy = 2759.8631 kcal/mol (2757.1605 without restraints) Performing minimization step: 1895. Total energy = 2757.6866 kcal/mol (2754.9847 without restraints) Performing minimization step: 1896. Total energy = 2755.5131 kcal/mol (2752.8120 without restraints) Performing minimization step: 1897. Total energy = 2753.3427 kcal/mol (2750.6423 without restraints) Performing minimization step: 1898. Total energy = 2751.1753 kcal/mol (2748.4757 without restraints) Performing minimization step: 1899. Total energy = 2749.0111 kcal/mol (2746.3122 without restraints) Performing minimization step: 1900. Total energy = 2746.8499 kcal/mol (2744.1518 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 2744.6918 kcal/mol (2741.9945 without restraints) Performing minimization step: 1902. Total energy = 2742.5368 kcal/mol (2739.8402 without restraints) Performing minimization step: 1903. Total energy = 2740.3849 kcal/mol (2737.6891 without restraints) Performing minimization step: 1904. Total energy = 2738.2360 kcal/mol (2735.5409 without restraints) Performing minimization step: 1905. Total energy = 2736.0901 kcal/mol (2733.3958 without restraints) Performing minimization step: 1906. Total energy = 2733.9474 kcal/mol (2731.2538 without restraints) Performing minimization step: 1907. Total energy = 2731.8076 kcal/mol (2729.1148 without restraints) Performing minimization step: 1908. Total energy = 2729.6710 kcal/mol (2726.9790 without restraints) Performing minimization step: 1909. Total energy = 2727.5375 kcal/mol (2724.8463 without restraints) Performing minimization step: 1910. Total energy = 2725.4069 kcal/mol (2722.7164 without restraints) Performing minimization step: 1911. Total energy = 2723.2793 kcal/mol (2720.5895 without restraints) Performing minimization step: 1912. Total energy = 2721.1547 kcal/mol (2718.4656 without restraints) Performing minimization step: 1913. Total energy = 2719.0331 kcal/mol (2716.3448 without restraints) Performing minimization step: 1914. Total energy = 2716.9144 kcal/mol (2714.2268 without restraints) Performing minimization step: 1915. Total energy = 2714.7987 kcal/mol (2712.1119 without restraints) Performing minimization step: 1916. Total energy = 2712.6864 kcal/mol (2710.0003 without restraints) Performing minimization step: 1917. Total energy = 2710.5771 kcal/mol (2707.8918 without restraints) Performing minimization step: 1918. Total energy = 2708.4706 kcal/mol (2705.7862 without restraints) Performing minimization step: 1919. Total energy = 2706.3671 kcal/mol (2703.6833 without restraints) Performing minimization step: 1920. Total energy = 2704.2665 kcal/mol (2701.5834 without restraints) Performing minimization step: 1921. Total energy = 2702.1688 kcal/mol (2699.4865 without restraints) Performing minimization step: 1922. Total energy = 2700.0742 kcal/mol (2697.3926 without restraints) Performing minimization step: 1923. Total energy = 2697.9825 kcal/mol (2695.3018 without restraints) Performing minimization step: 1924. Total energy = 2695.8938 kcal/mol (2693.2138 without restraints) Performing minimization step: 1925. Total energy = 2693.8080 kcal/mol (2691.1287 without restraints) Performing minimization step: 1926. Total energy = 2691.7254 kcal/mol (2689.0468 without restraints) Performing minimization step: 1927. Total energy = 2689.6454 kcal/mol (2686.9676 without restraints) Performing minimization step: 1928. Total energy = 2687.5685 kcal/mol (2684.8914 without restraints) Performing minimization step: 1929. Total energy = 2685.4944 kcal/mol (2682.8181 without restraints) Performing minimization step: 1930. Total energy = 2683.4233 kcal/mol (2680.7477 without restraints) Performing minimization step: 1931. Total energy = 2681.3556 kcal/mol (2678.6807 without restraints) Performing minimization step: 1932. Total energy = 2679.2903 kcal/mol (2676.6162 without restraints) Performing minimization step: 1933. Total energy = 2677.2280 kcal/mol (2674.5546 without restraints) Performing minimization step: 1934. Total energy = 2675.1685 kcal/mol (2672.4959 without restraints) Performing minimization step: 1935. Total energy = 2673.1120 kcal/mol (2670.4401 without restraints) Performing minimization step: 1936. Total energy = 2671.0583 kcal/mol (2668.3872 without restraints) Performing minimization step: 1937. Total energy = 2669.0076 kcal/mol (2666.3372 without restraints) Performing minimization step: 1938. Total energy = 2666.9598 kcal/mol (2664.2901 without restraints) Performing minimization step: 1939. Total energy = 2664.9148 kcal/mol (2662.2459 without restraints) Performing minimization step: 1940. Total energy = 2662.8727 kcal/mol (2660.2046 without restraints) Performing minimization step: 1941. Total energy = 2660.8335 kcal/mol (2658.1661 without restraints) Performing minimization step: 1942. Total energy = 2658.7972 kcal/mol (2656.1305 without restraints) Performing minimization step: 1943. Total energy = 2656.7637 kcal/mol (2654.0978 without restraints) Performing minimization step: 1944. Total energy = 2654.7331 kcal/mol (2652.0680 without restraints) Performing minimization step: 1945. Total energy = 2652.7054 kcal/mol (2650.0409 without restraints) Performing minimization step: 1946. Total energy = 2650.6805 kcal/mol (2648.0168 without restraints) Performing minimization step: 1947. Total energy = 2648.6585 kcal/mol (2645.9955 without restraints) Performing minimization step: 1948. Total energy = 2646.6392 kcal/mol (2643.9770 without restraints) Performing minimization step: 1949. Total energy = 2644.6229 kcal/mol (2641.9614 without restraints) Performing minimization step: 1950. Total energy = 2642.6093 kcal/mol (2639.9486 without restraints) Performing minimization step: 1951. Total energy = 2640.5986 kcal/mol (2637.9386 without restraints) Performing minimization step: 1952. Total energy = 2638.5908 kcal/mol (2635.9315 without restraints) Performing minimization step: 1953. Total energy = 2636.5857 kcal/mol (2633.9272 without restraints) Performing minimization step: 1954. Total energy = 2634.5835 kcal/mol (2631.9257 without restraints) Performing minimization step: 1955. Total energy = 2632.5844 kcal/mol (2629.9274 without restraints) Performing minimization step: 1956. Total energy = 2630.5878 kcal/mol (2627.9315 without restraints) Performing minimization step: 1957. Total energy = 2628.5940 kcal/mol (2625.9384 without restraints) Performing minimization step: 1958. Total energy = 2626.6029 kcal/mol (2623.9481 without restraints) Performing minimization step: 1959. Total energy = 2624.6147 kcal/mol (2621.9606 without restraints) Performing minimization step: 1960. Total energy = 2622.6292 kcal/mol (2619.9758 without restraints) Performing minimization step: 1961. Total energy = 2620.6465 kcal/mol (2617.9939 without restraints) Performing minimization step: 1962. Total energy = 2618.6666 kcal/mol (2616.0147 without restraints) Performing minimization step: 1963. Total energy = 2616.6894 kcal/mol (2614.0383 without restraints) Performing minimization step: 1964. Total energy = 2614.7150 kcal/mol (2612.0646 without restraints) Performing minimization step: 1965. Total energy = 2612.7434 kcal/mol (2610.0937 without restraints) Performing minimization step: 1966. Total energy = 2610.7746 kcal/mol (2608.1256 without restraints) Performing minimization step: 1967. Total energy = 2608.8085 kcal/mol (2606.1603 without restraints) Performing minimization step: 1968. Total energy = 2606.8451 kcal/mol (2604.1976 without restraints) Performing minimization step: 1969. Total energy = 2604.8845 kcal/mol (2602.2377 without restraints) Performing minimization step: 1970. Total energy = 2602.9266 kcal/mol (2600.2806 without restraints) Performing minimization step: 1971. Total energy = 2600.9715 kcal/mol (2598.3262 without restraints) Performing minimization step: 1972. Total energy = 2599.0191 kcal/mol (2596.3745 without restraints) Performing minimization step: 1973. Total energy = 2597.0693 kcal/mol (2594.4255 without restraints) Performing minimization step: 1974. Total energy = 2595.1224 kcal/mol (2592.4793 without restraints) Performing minimization step: 1975. Total energy = 2593.1782 kcal/mol (2590.5358 without restraints) Performing minimization step: 1976. Total energy = 2591.2366 kcal/mol (2588.5950 without restraints) Performing minimization step: 1977. Total energy = 2589.2977 kcal/mol (2586.6568 without restraints) Performing minimization step: 1978. Total energy = 2587.3616 kcal/mol (2584.7214 without restraints) Performing minimization step: 1979. Total energy = 2585.4281 kcal/mol (2582.7887 without restraints) Performing minimization step: 1980. Total energy = 2583.4973 kcal/mol (2580.8586 without restraints) Performing minimization step: 1981. Total energy = 2581.5692 kcal/mol (2578.9312 without restraints) Performing minimization step: 1982. Total energy = 2579.6438 kcal/mol (2577.0066 without restraints) Performing minimization step: 1983. Total energy = 2577.7210 kcal/mol (2575.0845 without restraints) Performing minimization step: 1984. Total energy = 2575.8010 kcal/mol (2573.1652 without restraints) Performing minimization step: 1985. Total energy = 2573.8834 kcal/mol (2571.2484 without restraints) Performing minimization step: 1986. Total energy = 2571.9687 kcal/mol (2569.3344 without restraints) Performing minimization step: 1987. Total energy = 2570.0566 kcal/mol (2567.4230 without restraints) Performing minimization step: 1988. Total energy = 2568.1472 kcal/mol (2565.5143 without restraints) Performing minimization step: 1989. Total energy = 2566.2404 kcal/mol (2563.6083 without restraints) Performing minimization step: 1990. Total energy = 2564.3362 kcal/mol (2561.7048 without restraints) Performing minimization step: 1991. Total energy = 2562.4347 kcal/mol (2559.8041 without restraints) Performing minimization step: 1992. Total energy = 2560.5358 kcal/mol (2557.9059 without restraints) Performing minimization step: 1993. Total energy = 2558.6396 kcal/mol (2556.0104 without restraints) Performing minimization step: 1994. Total energy = 2556.7460 kcal/mol (2554.1175 without restraints) Performing minimization step: 1995. Total energy = 2554.8550 kcal/mol (2552.2272 without restraints) Performing minimization step: 1996. Total energy = 2552.9666 kcal/mol (2550.3396 without restraints) Performing minimization step: 1997. Total energy = 2551.0808 kcal/mol (2548.4545 without restraints) Performing minimization step: 1998. Total energy = 2549.1976 kcal/mol (2546.5721 without restraints) Performing minimization step: 1999. Total energy = 2547.3171 kcal/mol (2544.6922 without restraints) Performing minimization step: 2000. Total energy = 2545.4391 kcal/mol (2542.8150 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 2543.5638 kcal/mol (2540.9403 without restraints) Performing minimization step: 2002. Total energy = 2541.6908 kcal/mol (2539.0682 without restraints) Performing minimization step: 2003. Total energy = 2539.8206 kcal/mol (2537.1987 without restraints) Performing minimization step: 2004. Total energy = 2537.9532 kcal/mol (2535.3320 without restraints) Performing minimization step: 2005. Total energy = 2536.0881 kcal/mol (2533.4677 without restraints) Performing minimization step: 2006. Total energy = 2534.2259 kcal/mol (2531.6061 without restraints) Performing minimization step: 2007. Total energy = 2532.3659 kcal/mol (2529.7469 without restraints) Performing minimization step: 2008. Total energy = 2530.5087 kcal/mol (2527.8904 without restraints) Performing minimization step: 2009. Total energy = 2528.6539 kcal/mol (2526.0363 without restraints) Performing minimization step: 2010. Total energy = 2526.8016 kcal/mol (2524.1848 without restraints) Performing minimization step: 2011. Total energy = 2524.9519 kcal/mol (2522.3358 without restraints) Performing minimization step: 2012. Total energy = 2523.1047 kcal/mol (2520.4893 without restraints) Performing minimization step: 2013. Total energy = 2521.2600 kcal/mol (2518.6454 without restraints) Performing minimization step: 2014. Total energy = 2519.4179 kcal/mol (2516.8040 without restraints) Performing minimization step: 2015. Total energy = 2517.5783 kcal/mol (2514.9651 without restraints) Performing minimization step: 2016. Total energy = 2515.7412 kcal/mol (2513.1288 without restraints) Performing minimization step: 2017. Total energy = 2513.9067 kcal/mol (2511.2950 without restraints) Performing minimization step: 2018. Total energy = 2512.0747 kcal/mol (2509.4637 without restraints) Performing minimization step: 2019. Total energy = 2510.2452 kcal/mol (2507.6349 without restraints) Performing minimization step: 2020. Total energy = 2508.4182 kcal/mol (2505.8086 without restraints) Performing minimization step: 2021. Total energy = 2506.5936 kcal/mol (2503.9848 without restraints) Performing minimization step: 2022. Total energy = 2504.7716 kcal/mol (2502.1635 without restraints) Performing minimization step: 2023. Total energy = 2502.9520 kcal/mol (2500.3446 without restraints) Performing minimization step: 2024. Total energy = 2501.1350 kcal/mol (2498.5283 without restraints) Performing minimization step: 2025. Total energy = 2499.3202 kcal/mol (2496.7143 without restraints) Performing minimization step: 2026. Total energy = 2497.5081 kcal/mol (2494.9029 without restraints) Performing minimization step: 2027. Total energy = 2495.6985 kcal/mol (2493.0940 without restraints) Performing minimization step: 2028. Total energy = 2493.8913 kcal/mol (2491.2876 without restraints) Performing minimization step: 2029. Total energy = 2492.0866 kcal/mol (2489.4836 without restraints) Performing minimization step: 2030. Total energy = 2490.2844 kcal/mol (2487.6821 without restraints) Performing minimization step: 2031. Total energy = 2488.4846 kcal/mol (2485.8830 without restraints) Performing minimization step: 2032. Total energy = 2486.6873 kcal/mol (2484.0864 without restraints) Performing minimization step: 2033. Total energy = 2484.8924 kcal/mol (2482.2922 without restraints) Performing minimization step: 2034. Total energy = 2483.0999 kcal/mol (2480.5005 without restraints) Performing minimization step: 2035. Total energy = 2481.3099 kcal/mol (2478.7112 without restraints) Performing minimization step: 2036. Total energy = 2479.5223 kcal/mol (2476.9243 without restraints) Performing minimization step: 2037. Total energy = 2477.7372 kcal/mol (2475.1399 without restraints) Performing minimization step: 2038. Total energy = 2475.9544 kcal/mol (2473.3579 without restraints) Performing minimization step: 2039. Total energy = 2474.1740 kcal/mol (2471.5782 without restraints) Performing minimization step: 2040. Total energy = 2472.3961 kcal/mol (2469.8010 without restraints) Performing minimization step: 2041. Total energy = 2470.6206 kcal/mol (2468.0262 without restraints) Performing minimization step: 2042. Total energy = 2468.8476 kcal/mol (2466.2539 without restraints) Performing minimization step: 2043. Total energy = 2467.0769 kcal/mol (2464.4839 without restraints) Performing minimization step: 2044. Total energy = 2465.3086 kcal/mol (2462.7163 without restraints) Performing minimization step: 2045. Total energy = 2463.5427 kcal/mol (2460.9512 without restraints) Performing minimization step: 2046. Total energy = 2461.7795 kcal/mol (2459.1887 without restraints) Performing minimization step: 2047. Total energy = 2460.0183 kcal/mol (2457.4283 without restraints) Performing minimization step: 2048. Total energy = 2458.2596 kcal/mol (2455.6702 without restraints) Performing minimization step: 2049. Total energy = 2456.5032 kcal/mol (2453.9146 without restraints) Performing minimization step: 2050. Total energy = 2454.7492 kcal/mol (2452.1613 without restraints) Performing minimization step: 2051. Total energy = 2452.9973 kcal/mol (2450.4101 without restraints) Performing minimization step: 2052. Total energy = 2451.2480 kcal/mol (2448.6616 without restraints) Performing minimization step: 2053. Total energy = 2449.5011 kcal/mol (2446.9153 without restraints) Performing minimization step: 2054. Total energy = 2447.7565 kcal/mol (2445.1715 without restraints) Performing minimization step: 2055. Total energy = 2446.0142 kcal/mol (2443.4299 without restraints) Performing minimization step: 2056. Total energy = 2444.2743 kcal/mol (2441.6908 without restraints) Performing minimization step: 2057. Total energy = 2442.5368 kcal/mol (2439.9539 without restraints) Performing minimization step: 2058. Total energy = 2440.8015 kcal/mol (2438.2194 without restraints) Performing minimization step: 2059. Total energy = 2439.0686 kcal/mol (2436.4872 without restraints) Performing minimization step: 2060. Total energy = 2437.3379 kcal/mol (2434.7572 without restraints) Performing minimization step: 2061. Total energy = 2435.6096 kcal/mol (2433.0296 without restraints) Performing minimization step: 2062. Total energy = 2433.8836 kcal/mol (2431.3044 without restraints) Performing minimization step: 2063. Total energy = 2432.1600 kcal/mol (2429.5815 without restraints) Performing minimization step: 2064. Total energy = 2430.4387 kcal/mol (2427.8609 without restraints) Performing minimization step: 2065. Total energy = 2428.7197 kcal/mol (2426.1426 without restraints) Performing minimization step: 2066. Total energy = 2427.0027 kcal/mol (2424.4264 without restraints) Performing minimization step: 2067. Total energy = 2425.2883 kcal/mol (2422.7127 without restraints) Performing minimization step: 2068. Total energy = 2423.5762 kcal/mol (2421.0012 without restraints) Performing minimization step: 2069. Total energy = 2421.8663 kcal/mol (2419.2921 without restraints) Performing minimization step: 2070. Total energy = 2420.1587 kcal/mol (2417.5852 without restraints) Performing minimization step: 2071. Total energy = 2418.4537 kcal/mol (2415.8809 without restraints) Performing minimization step: 2072. Total energy = 2416.7507 kcal/mol (2414.1786 without restraints) Performing minimization step: 2073. Total energy = 2415.0499 kcal/mol (2412.4786 without restraints) Performing minimization step: 2074. Total energy = 2413.3518 kcal/mol (2410.7812 without restraints) Performing minimization step: 2075. Total energy = 2411.6555 kcal/mol (2409.0857 without restraints) Performing minimization step: 2076. Total energy = 2409.9616 kcal/mol (2407.3924 without restraints) Performing minimization step: 2077. Total energy = 2408.2698 kcal/mol (2405.7014 without restraints) Performing minimization step: 2078. Total energy = 2406.5803 kcal/mol (2404.0126 without restraints) Performing minimization step: 2079. Total energy = 2404.8930 kcal/mol (2402.3260 without restraints) Performing minimization step: 2080. Total energy = 2403.2080 kcal/mol (2400.6417 without restraints) Performing minimization step: 2081. Total energy = 2401.5251 kcal/mol (2398.9595 without restraints) Performing minimization step: 2082. Total energy = 2399.8445 kcal/mol (2397.2797 without restraints) Performing minimization step: 2083. Total energy = 2398.1662 kcal/mol (2395.6021 without restraints) Performing minimization step: 2084. Total energy = 2396.4901 kcal/mol (2393.9267 without restraints) Performing minimization step: 2085. Total energy = 2394.8162 kcal/mol (2392.2535 without restraints) Performing minimization step: 2086. Total energy = 2393.1446 kcal/mol (2390.5826 without restraints) Performing minimization step: 2087. Total energy = 2391.4751 kcal/mol (2388.9138 without restraints) Performing minimization step: 2088. Total energy = 2389.8079 kcal/mol (2387.2473 without restraints) Performing minimization step: 2089. Total energy = 2388.1428 kcal/mol (2385.5830 without restraints) Performing minimization step: 2090. Total energy = 2386.4799 kcal/mol (2383.9208 without restraints) Performing minimization step: 2091. Total energy = 2384.8193 kcal/mol (2382.2609 without restraints) Performing minimization step: 2092. Total energy = 2383.1610 kcal/mol (2380.6033 without restraints) Performing minimization step: 2093. Total energy = 2381.5047 kcal/mol (2378.9477 without restraints) Performing minimization step: 2094. Total energy = 2379.8505 kcal/mol (2377.2943 without restraints) Performing minimization step: 2095. Total energy = 2378.1986 kcal/mol (2375.6430 without restraints) Performing minimization step: 2096. Total energy = 2376.5489 kcal/mol (2373.9942 without restraints) Performing minimization step: 2097. Total energy = 2374.9014 kcal/mol (2372.3473 without restraints) Performing minimization step: 2098. Total energy = 2373.2559 kcal/mol (2370.7026 without restraints) Performing minimization step: 2099. Total energy = 2371.6126 kcal/mol (2369.0600 without restraints) Performing minimization step: 2100. Total energy = 2369.9715 kcal/mol (2367.4195 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 2368.3325 kcal/mol (2365.7812 without restraints) Performing minimization step: 2102. Total energy = 2366.6956 kcal/mol (2364.1451 without restraints) Performing minimization step: 2103. Total energy = 2365.0612 kcal/mol (2362.5115 without restraints) Performing minimization step: 2104. Total energy = 2363.4287 kcal/mol (2360.8796 without restraints) Performing minimization step: 2105. Total energy = 2361.7982 kcal/mol (2359.2499 without restraints) Performing minimization step: 2106. Total energy = 2360.1699 kcal/mol (2357.6223 without restraints) Performing minimization step: 2107. Total energy = 2358.5437 kcal/mol (2355.9968 without restraints) Performing minimization step: 2108. Total energy = 2356.9196 kcal/mol (2354.3734 without restraints) Performing minimization step: 2109. Total energy = 2355.2977 kcal/mol (2352.7523 without restraints) Performing minimization step: 2110. Total energy = 2353.6780 kcal/mol (2351.1332 without restraints) Performing minimization step: 2111. Total energy = 2352.0602 kcal/mol (2349.5161 without restraints) Performing minimization step: 2112. Total energy = 2350.4446 kcal/mol (2347.9012 without restraints) Performing minimization step: 2113. Total energy = 2348.8310 kcal/mol (2346.2884 without restraints) Performing minimization step: 2114. Total energy = 2347.2195 kcal/mol (2344.6776 without restraints) Performing minimization step: 2115. Total energy = 2345.6102 kcal/mol (2343.0690 without restraints) Performing minimization step: 2116. Total energy = 2344.0029 kcal/mol (2341.4624 without restraints) Performing minimization step: 2117. Total energy = 2342.3977 kcal/mol (2339.8579 without restraints) Performing minimization step: 2118. Total energy = 2340.7946 kcal/mol (2338.2555 without restraints) Performing minimization step: 2119. Total energy = 2339.1935 kcal/mol (2336.6552 without restraints) Performing minimization step: 2120. Total energy = 2337.5945 kcal/mol (2335.0569 without restraints) Performing minimization step: 2121. Total energy = 2335.9976 kcal/mol (2333.4607 without restraints) Performing minimization step: 2122. Total energy = 2334.4028 kcal/mol (2331.8666 without restraints) Performing minimization step: 2123. Total energy = 2332.8099 kcal/mol (2330.2744 without restraints) Performing minimization step: 2124. Total energy = 2331.2192 kcal/mol (2328.6844 without restraints) Performing minimization step: 2125. Total energy = 2329.6305 kcal/mol (2327.0964 without restraints) Performing minimization step: 2126. Total energy = 2328.0438 kcal/mol (2325.5105 without restraints) Performing minimization step: 2127. Total energy = 2326.4592 kcal/mol (2323.9266 without restraints) Performing minimization step: 2128. Total energy = 2324.8767 kcal/mol (2322.3447 without restraints) Performing minimization step: 2129. Total energy = 2323.2965 kcal/mol (2320.7654 without restraints) Performing minimization step: 2130. Total energy = 2321.7180 kcal/mol (2319.1876 without restraints) Performing minimization step: 2131. Total energy = 2320.1416 kcal/mol (2317.6118 without restraints) Performing minimization step: 2132. Total energy = 2318.5671 kcal/mol (2316.0381 without restraints) Performing minimization step: 2133. Total energy = 2316.9947 kcal/mol (2314.4663 without restraints) Performing minimization step: 2134. Total energy = 2315.4245 kcal/mol (2312.8968 without restraints) Performing minimization step: 2135. Total energy = 2313.8560 kcal/mol (2311.3291 without restraints) Performing minimization step: 2136. Total energy = 2312.2896 kcal/mol (2309.7634 without restraints) Performing minimization step: 2137. Total energy = 2310.7253 kcal/mol (2308.1999 without restraints) Performing minimization step: 2138. Total energy = 2309.1630 kcal/mol (2306.6382 without restraints) Performing minimization step: 2139. Total energy = 2307.6026 kcal/mol (2305.0785 without restraints) Performing minimization step: 2140. Total energy = 2306.0441 kcal/mol (2303.5208 without restraints) Performing minimization step: 2141. Total energy = 2304.4877 kcal/mol (2301.9651 without restraints) Performing minimization step: 2142. Total energy = 2302.9332 kcal/mol (2300.4113 without restraints) Performing minimization step: 2143. Total energy = 2301.3807 kcal/mol (2298.8595 without restraints) Performing minimization step: 2144. Total energy = 2299.8302 kcal/mol (2297.3097 without restraints) Performing minimization step: 2145. Total energy = 2298.2817 kcal/mol (2295.7619 without restraints) Performing minimization step: 2146. Total energy = 2296.7351 kcal/mol (2294.2160 without restraints) Performing minimization step: 2147. Total energy = 2295.1904 kcal/mol (2292.6721 without restraints) Performing minimization step: 2148. Total energy = 2293.6478 kcal/mol (2291.1301 without restraints) Performing minimization step: 2149. Total energy = 2292.1070 kcal/mol (2289.5899 without restraints) Performing minimization step: 2150. Total energy = 2290.5681 kcal/mol (2288.0519 without restraints) Performing minimization step: 2151. Total energy = 2289.0313 kcal/mol (2286.5158 without restraints) Performing minimization step: 2152. Total energy = 2287.4964 kcal/mol (2284.9816 without restraints) Performing minimization step: 2153. Total energy = 2285.9634 kcal/mol (2283.4494 without restraints) Performing minimization step: 2154. Total energy = 2284.4324 kcal/mol (2281.9191 without restraints) Performing minimization step: 2155. Total energy = 2282.9034 kcal/mol (2280.3907 without restraints) Performing minimization step: 2156. Total energy = 2281.3762 kcal/mol (2278.8643 without restraints) Performing minimization step: 2157. Total energy = 2279.8510 kcal/mol (2277.3397 without restraints) Performing minimization step: 2158. Total energy = 2278.3277 kcal/mol (2275.8171 without restraints) Performing minimization step: 2159. Total energy = 2276.8064 kcal/mol (2274.2967 without restraints) Performing minimization step: 2160. Total energy = 2275.2872 kcal/mol (2272.7781 without restraints) Performing minimization step: 2161. Total energy = 2273.7699 kcal/mol (2271.2614 without restraints) Performing minimization step: 2162. Total energy = 2272.2541 kcal/mol (2269.7465 without restraints) Performing minimization step: 2163. Total energy = 2270.7404 kcal/mol (2268.2334 without restraints) Performing minimization step: 2164. Total energy = 2269.2285 kcal/mol (2266.7223 without restraints) Performing minimization step: 2165. Total energy = 2267.7185 kcal/mol (2265.2130 without restraints) Performing minimization step: 2166. Total energy = 2266.2104 kcal/mol (2263.7056 without restraints) Performing minimization step: 2167. Total energy = 2264.7042 kcal/mol (2262.2001 without restraints) Performing minimization step: 2168. Total energy = 2263.1999 kcal/mol (2260.6964 without restraints) Performing minimization step: 2169. Total energy = 2261.6974 kcal/mol (2259.1947 without restraints) Performing minimization step: 2170. Total energy = 2260.1968 kcal/mol (2257.6948 without restraints) Performing minimization step: 2171. Total energy = 2258.6981 kcal/mol (2256.1968 without restraints) Performing minimization step: 2172. Total energy = 2257.2012 kcal/mol (2254.7006 without restraints) Performing minimization step: 2173. Total energy = 2255.7062 kcal/mol (2253.2064 without restraints) Performing minimization step: 2174. Total energy = 2254.2131 kcal/mol (2251.7139 without restraints) Performing minimization step: 2175. Total energy = 2252.7219 kcal/mol (2250.2235 without restraints) Performing minimization step: 2176. Total energy = 2251.2326 kcal/mol (2248.7348 without restraints) Performing minimization step: 2177. Total energy = 2249.7450 kcal/mol (2247.2479 without restraints) Performing minimization step: 2178. Total energy = 2248.2594 kcal/mol (2245.7631 without restraints) Performing minimization step: 2179. Total energy = 2246.7755 kcal/mol (2244.2799 without restraints) Performing minimization step: 2180. Total energy = 2245.2934 kcal/mol (2242.7985 without restraints) Performing minimization step: 2181. Total energy = 2243.8133 kcal/mol (2241.3190 without restraints) Performing minimization step: 2182. Total energy = 2242.3347 kcal/mol (2239.8412 without restraints) Performing minimization step: 2183. Total energy = 2240.8581 kcal/mol (2238.3654 without restraints) Performing minimization step: 2184. Total energy = 2239.3836 kcal/mol (2236.8915 without restraints) Performing minimization step: 2185. Total energy = 2237.9106 kcal/mol (2235.4192 without restraints) Performing minimization step: 2186. Total energy = 2236.4394 kcal/mol (2233.9487 without restraints) Performing minimization step: 2187. Total energy = 2234.9701 kcal/mol (2232.4801 without restraints) Performing minimization step: 2188. Total energy = 2233.5025 kcal/mol (2231.0133 without restraints) Performing minimization step: 2189. Total energy = 2232.0368 kcal/mol (2229.5483 without restraints) Performing minimization step: 2190. Total energy = 2230.5729 kcal/mol (2228.0850 without restraints) Performing minimization step: 2191. Total energy = 2229.1109 kcal/mol (2226.6238 without restraints) Performing minimization step: 2192. Total energy = 2227.6506 kcal/mol (2225.1642 without restraints) Performing minimization step: 2193. Total energy = 2226.1919 kcal/mol (2223.7061 without restraints) Performing minimization step: 2194. Total energy = 2224.7349 kcal/mol (2222.2499 without restraints) Performing minimization step: 2195. Total energy = 2223.2799 kcal/mol (2220.7956 without restraints) Performing minimization step: 2196. Total energy = 2221.8266 kcal/mol (2219.3431 without restraints) Performing minimization step: 2197. Total energy = 2220.3752 kcal/mol (2217.8923 without restraints) Performing minimization step: 2198. Total energy = 2218.9255 kcal/mol (2216.4433 without restraints) Performing minimization step: 2199. Total energy = 2217.4776 kcal/mol (2214.9961 without restraints) Performing minimization step: 2200. Total energy = 2216.0314 kcal/mol (2213.5506 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 2214.5870 kcal/mol (2212.1069 without restraints) Performing minimization step: 2202. Total energy = 2213.1446 kcal/mol (2210.6654 without restraints) Performing minimization step: 2203. Total energy = 2211.7038 kcal/mol (2209.2252 without restraints) Performing minimization step: 2204. Total energy = 2210.2647 kcal/mol (2207.7868 without restraints) Performing minimization step: 2205. Total energy = 2208.8272 kcal/mol (2206.3500 without restraints) Performing minimization step: 2206. Total energy = 2207.3916 kcal/mol (2204.9150 without restraints) Performing minimization step: 2207. Total energy = 2205.9577 kcal/mol (2203.4819 without restraints) Performing minimization step: 2208. Total energy = 2204.5255 kcal/mol (2202.0504 without restraints) Performing minimization step: 2209. Total energy = 2203.0950 kcal/mol (2200.6205 without restraints) Performing minimization step: 2210. Total energy = 2201.6662 kcal/mol (2199.1925 without restraints) Performing minimization step: 2211. Total energy = 2200.2392 kcal/mol (2197.7662 without restraints) Performing minimization step: 2212. Total energy = 2198.8139 kcal/mol (2196.3416 without restraints) Performing minimization step: 2213. Total energy = 2197.3903 kcal/mol (2194.9187 without restraints) Performing minimization step: 2214. Total energy = 2195.9684 kcal/mol (2193.4975 without restraints) Performing minimization step: 2215. Total energy = 2194.5482 kcal/mol (2192.0781 without restraints) Performing minimization step: 2216. Total energy = 2193.1299 kcal/mol (2190.6605 without restraints) Performing minimization step: 2217. Total energy = 2191.7132 kcal/mol (2189.2444 without restraints) Performing minimization step: 2218. Total energy = 2190.2981 kcal/mol (2187.8300 without restraints) Performing minimization step: 2219. Total energy = 2188.8847 kcal/mol (2186.4173 without restraints) Performing minimization step: 2220. Total energy = 2187.4730 kcal/mol (2185.0064 without restraints) Performing minimization step: 2221. Total energy = 2186.0630 kcal/mol (2183.5971 without restraints) Performing minimization step: 2222. Total energy = 2184.6547 kcal/mol (2182.1895 without restraints) Performing minimization step: 2223. Total energy = 2183.2481 kcal/mol (2180.7835 without restraints) Performing minimization step: 2224. Total energy = 2181.8431 kcal/mol (2179.3793 without restraints) Performing minimization step: 2225. Total energy = 2180.4399 kcal/mol (2177.9767 without restraints) Performing minimization step: 2226. Total energy = 2179.0382 kcal/mol (2176.5758 without restraints) Performing minimization step: 2227. Total energy = 2177.6383 kcal/mol (2175.1765 without restraints) Performing minimization step: 2228. Total energy = 2176.2399 kcal/mol (2173.7789 without restraints) Performing minimization step: 2229. Total energy = 2174.8433 kcal/mol (2172.3830 without restraints) Performing minimization step: 2230. Total energy = 2173.4483 kcal/mol (2170.9887 without restraints) Performing minimization step: 2231. Total energy = 2172.0550 kcal/mol (2169.5961 without restraints) Performing minimization step: 2232. Total energy = 2170.6633 kcal/mol (2168.2051 without restraints) Performing minimization step: 2233. Total energy = 2169.2733 kcal/mol (2166.8158 without restraints) Performing minimization step: 2234. Total energy = 2167.8850 kcal/mol (2165.4281 without restraints) Performing minimization step: 2235. Total energy = 2166.4982 kcal/mol (2164.0421 without restraints) Performing minimization step: 2236. Total energy = 2165.1131 kcal/mol (2162.6577 without restraints) Performing minimization step: 2237. Total energy = 2163.7296 kcal/mol (2161.2749 without restraints) Performing minimization step: 2238. Total energy = 2162.3478 kcal/mol (2159.8937 without restraints) Performing minimization step: 2239. Total energy = 2160.9676 kcal/mol (2158.5142 without restraints) Performing minimization step: 2240. Total energy = 2159.5890 kcal/mol (2157.1363 without restraints) Performing minimization step: 2241. Total energy = 2158.2121 kcal/mol (2155.7601 without restraints) Performing minimization step: 2242. Total energy = 2156.8367 kcal/mol (2154.3854 without restraints) Performing minimization step: 2243. Total energy = 2155.4629 kcal/mol (2153.0124 without restraints) Performing minimization step: 2244. Total energy = 2154.0908 kcal/mol (2151.6409 without restraints) Performing minimization step: 2245. Total energy = 2152.7204 kcal/mol (2150.2713 without restraints) Performing minimization step: 2246. Total energy = 2151.3518 kcal/mol (2148.9033 without restraints) Performing minimization step: 2247. Total energy = 2149.9844 kcal/mol (2147.5366 without restraints) Performing minimization step: 2248. Total energy = 2148.6187 kcal/mol (2146.1716 without restraints) Performing minimization step: 2249. Total energy = 2147.2545 kcal/mol (2144.8081 without restraints) Performing minimization step: 2250. Total energy = 2145.8923 kcal/mol (2143.4467 without restraints) Performing minimization step: 2251. Total energy = 2144.5314 kcal/mol (2142.0864 without restraints) Performing minimization step: 2252. Total energy = 2143.1720 kcal/mol (2140.7277 without restraints) Performing minimization step: 2253. Total energy = 2141.8141 kcal/mol (2139.3705 without restraints) Performing minimization step: 2254. Total energy = 2140.4579 kcal/mol (2138.0150 without restraints) Performing minimization step: 2255. Total energy = 2139.1032 kcal/mol (2136.6610 without restraints) Performing minimization step: 2256. Total energy = 2137.7501 kcal/mol (2135.3086 without restraints) Performing minimization step: 2257. Total energy = 2136.3986 kcal/mol (2133.9578 without restraints) Performing minimization step: 2258. Total energy = 2135.0486 kcal/mol (2132.6085 without restraints) Performing minimization step: 2259. Total energy = 2133.7002 kcal/mol (2131.2608 without restraints) Performing minimization step: 2260. Total energy = 2132.3534 kcal/mol (2129.9147 without restraints) Performing minimization step: 2261. Total energy = 2131.0081 kcal/mol (2128.5701 without restraints) Performing minimization step: 2262. Total energy = 2129.6643 kcal/mol (2127.2270 without restraints) Performing minimization step: 2263. Total energy = 2128.3221 kcal/mol (2125.8855 without restraints) Performing minimization step: 2264. Total energy = 2126.9815 kcal/mol (2124.5455 without restraints) Performing minimization step: 2265. Total energy = 2125.6423 kcal/mol (2123.2071 without restraints) Performing minimization step: 2266. Total energy = 2124.3048 kcal/mol (2121.8702 without restraints) Performing minimization step: 2267. Total energy = 2122.9687 kcal/mol (2120.5348 without restraints) Performing minimization step: 2268. Total energy = 2121.6342 kcal/mol (2119.2010 without restraints) Performing minimization step: 2269. Total energy = 2120.3012 kcal/mol (2117.8687 without restraints) Performing minimization step: 2270. Total energy = 2118.9698 kcal/mol (2116.5380 without restraints) Performing minimization step: 2271. Total energy = 2117.6399 kcal/mol (2115.2087 without restraints) Performing minimization step: 2272. Total energy = 2116.3117 kcal/mol (2113.8815 without restraints) Performing minimization step: 2273. Total energy = 2114.9850 kcal/mol (2112.5552 without restraints) Performing minimization step: 2274. Total energy = 2113.6596 kcal/mol (2111.2305 without restraints) Performing minimization step: 2275. Total energy = 2112.3357 kcal/mol (2109.9073 without restraints) Performing minimization step: 2276. Total energy = 2111.0133 kcal/mol (2108.5857 without restraints) Performing minimization step: 2277. Total energy = 2109.6924 kcal/mol (2107.2654 without restraints) Performing minimization step: 2278. Total energy = 2108.3730 kcal/mol (2105.9467 without restraints) Performing minimization step: 2279. Total energy = 2107.0551 kcal/mol (2104.6296 without restraints) Performing minimization step: 2280. Total energy = 2105.7388 kcal/mol (2103.3139 without restraints) Performing minimization step: 2281. Total energy = 2104.4239 kcal/mol (2101.9997 without restraints) Performing minimization step: 2282. Total energy = 2103.1105 kcal/mol (2100.6870 without restraints) Performing minimization step: 2283. Total energy = 2101.7988 kcal/mol (2099.3760 without restraints) Performing minimization step: 2284. Total energy = 2100.4884 kcal/mol (2098.0662 without restraints) Performing minimization step: 2285. Total energy = 2099.1794 kcal/mol (2096.7580 without restraints) Performing minimization step: 2286. Total energy = 2097.8720 kcal/mol (2095.4514 without restraints) Performing minimization step: 2287. Total energy = 2096.5661 kcal/mol (2094.1460 without restraints) Performing minimization step: 2288. Total energy = 2095.2616 kcal/mol (2092.8422 without restraints) Performing minimization step: 2289. Total energy = 2093.9585 kcal/mol (2091.5398 without restraints) Performing minimization step: 2290. Total energy = 2092.6566 kcal/mol (2090.2386 without restraints) Performing minimization step: 2291. Total energy = 2091.3565 kcal/mol (2088.9392 without restraints) Performing minimization step: 2292. Total energy = 2090.0578 kcal/mol (2087.6412 without restraints) Performing minimization step: 2293. Total energy = 2088.7606 kcal/mol (2086.3446 without restraints) Performing minimization step: 2294. Total energy = 2087.4648 kcal/mol (2085.0495 without restraints) Performing minimization step: 2295. Total energy = 2086.1704 kcal/mol (2083.7558 without restraints) Performing minimization step: 2296. Total energy = 2084.8775 kcal/mol (2082.4636 without restraints) Performing minimization step: 2297. Total energy = 2083.5863 kcal/mol (2081.1731 without restraints) Performing minimization step: 2298. Total energy = 2082.2963 kcal/mol (2079.8838 without restraints) Performing minimization step: 2299. Total energy = 2081.0077 kcal/mol (2078.5959 without restraints) Performing minimization step: 2300. Total energy = 2079.7206 kcal/mol (2077.3094 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 2078.4349 kcal/mol (2076.0244 without restraints) Performing minimization step: 2302. Total energy = 2077.1506 kcal/mol (2074.7408 without restraints) Performing minimization step: 2303. Total energy = 2075.8677 kcal/mol (2073.4586 without restraints) Performing minimization step: 2304. Total energy = 2074.5863 kcal/mol (2072.1779 without restraints) Performing minimization step: 2305. Total energy = 2073.3063 kcal/mol (2070.8985 without restraints) Performing minimization step: 2306. Total energy = 2072.0277 kcal/mol (2069.6206 without restraints) Performing minimization step: 2307. Total energy = 2070.7505 kcal/mol (2068.3441 without restraints) Performing minimization step: 2308. Total energy = 2069.4747 kcal/mol (2067.0690 without restraints) Performing minimization step: 2309. Total energy = 2068.2004 kcal/mol (2065.7953 without restraints) Performing minimization step: 2310. Total energy = 2066.9274 kcal/mol (2064.5230 without restraints) Performing minimization step: 2311. Total energy = 2065.6558 kcal/mol (2063.2522 without restraints) Performing minimization step: 2312. Total energy = 2064.3859 kcal/mol (2061.9829 without restraints) Performing minimization step: 2313. Total energy = 2063.1171 kcal/mol (2060.7148 without restraints) Performing minimization step: 2314. Total energy = 2061.8497 kcal/mol (2059.4481 without restraints) Performing minimization step: 2315. Total energy = 2060.5837 kcal/mol (2058.1828 without restraints) Performing minimization step: 2316. Total energy = 2059.3192 kcal/mol (2056.9189 without restraints) Performing minimization step: 2317. Total energy = 2058.0559 kcal/mol (2055.6563 without restraints) Performing minimization step: 2318. Total energy = 2056.7941 kcal/mol (2054.3952 without restraints) Performing minimization step: 2319. Total energy = 2055.5336 kcal/mol (2053.1354 without restraints) Performing minimization step: 2320. Total energy = 2054.2746 kcal/mol (2051.8770 without restraints) Performing minimization step: 2321. Total energy = 2053.0169 kcal/mol (2050.6200 without restraints) Performing minimization step: 2322. Total energy = 2051.7605 kcal/mol (2049.3643 without restraints) Performing minimization step: 2323. Total energy = 2050.5060 kcal/mol (2048.1104 without restraints) Performing minimization step: 2324. Total energy = 2049.2523 kcal/mol (2046.8573 without restraints) Performing minimization step: 2325. Total energy = 2048.0000 kcal/mol (2045.6058 without restraints) Performing minimization step: 2326. Total energy = 2046.7491 kcal/mol (2044.3556 without restraints) Performing minimization step: 2327. Total energy = 2045.4996 kcal/mol (2043.1068 without restraints) Performing minimization step: 2328. Total energy = 2044.2514 kcal/mol (2041.8593 without restraints) Performing minimization step: 2329. Total energy = 2043.0049 kcal/mol (2040.6134 without restraints) Performing minimization step: 2330. Total energy = 2041.7594 kcal/mol (2039.3686 without restraints) Performing minimization step: 2331. Total energy = 2040.5153 kcal/mol (2038.1252 without restraints) Performing minimization step: 2332. Total energy = 2039.2725 kcal/mol (2036.8831 without restraints) Performing minimization step: 2333. Total energy = 2038.0315 kcal/mol (2035.6427 without restraints) Performing minimization step: 2334. Total energy = 2036.7914 kcal/mol (2034.4033 without restraints) Performing minimization step: 2335. Total energy = 2035.5527 kcal/mol (2033.1652 without restraints) Performing minimization step: 2336. Total energy = 2034.3152 kcal/mol (2031.9285 without restraints) Performing minimization step: 2337. Total energy = 2033.0792 kcal/mol (2030.6931 without restraints) Performing minimization step: 2338. Total energy = 2031.8445 kcal/mol (2029.4590 without restraints) Performing minimization step: 2339. Total energy = 2030.6110 kcal/mol (2028.2263 without restraints) Performing minimization step: 2340. Total energy = 2029.3789 kcal/mol (2026.9948 without restraints) Performing minimization step: 2341. Total energy = 2028.1481 kcal/mol (2025.7647 without restraints) Performing minimization step: 2342. Total energy = 2026.9187 kcal/mol (2024.5359 without restraints) Performing minimization step: 2343. Total energy = 2025.6905 kcal/mol (2023.3084 without restraints) Performing minimization step: 2344. Total energy = 2024.4637 kcal/mol (2022.0823 without restraints) Performing minimization step: 2345. Total energy = 2023.2381 kcal/mol (2020.8574 without restraints) Performing minimization step: 2346. Total energy = 2022.0139 kcal/mol (2019.6338 without restraints) Performing minimization step: 2347. Total energy = 2020.7910 kcal/mol (2018.4116 without restraints) Performing minimization step: 2348. Total energy = 2019.5694 kcal/mol (2017.1907 without restraints) Performing minimization step: 2349. Total energy = 2018.3491 kcal/mol (2015.9710 without restraints) Performing minimization step: 2350. Total energy = 2017.1300 kcal/mol (2014.7526 without restraints) Performing minimization step: 2351. Total energy = 2015.9123 kcal/mol (2013.5355 without restraints) Performing minimization step: 2352. Total energy = 2014.6958 kcal/mol (2012.3197 without restraints) Performing minimization step: 2353. Total energy = 2013.4806 kcal/mol (2011.1052 without restraints) Performing minimization step: 2354. Total energy = 2012.2667 kcal/mol (2009.8920 without restraints) Performing minimization step: 2355. Total energy = 2011.0541 kcal/mol (2008.6800 without restraints) Performing minimization step: 2356. Total energy = 2009.8428 kcal/mol (2007.4694 without restraints) Performing minimization step: 2357. Total energy = 2008.6328 kcal/mol (2006.2600 without restraints) Performing minimization step: 2358. Total energy = 2007.4240 kcal/mol (2005.0519 without restraints) Performing minimization step: 2359. Total energy = 2006.2167 kcal/mol (2003.8453 without restraints) Performing minimization step: 2360. Total energy = 2005.0105 kcal/mol (2002.6397 without restraints) Performing minimization step: 2361. Total energy = 2003.8055 kcal/mol (2001.4354 without restraints) Performing minimization step: 2362. Total energy = 2002.6018 kcal/mol (2000.2324 without restraints) Performing minimization step: 2363. Total energy = 2001.3994 kcal/mol (1999.0306 without restraints) Performing minimization step: 2364. Total energy = 2000.1982 kcal/mol (1997.8301 without restraints) Performing minimization step: 2365. Total energy = 1998.9983 kcal/mol (1996.6309 without restraints) Performing minimization step: 2366. Total energy = 1997.7997 kcal/mol (1995.4329 without restraints) Performing minimization step: 2367. Total energy = 1996.6023 kcal/mol (1994.2362 without restraints) Performing minimization step: 2368. Total energy = 1995.4062 kcal/mol (1993.0407 without restraints) Performing minimization step: 2369. Total energy = 1994.2113 kcal/mol (1991.8465 without restraints) Performing minimization step: 2370. Total energy = 1993.0176 kcal/mol (1990.6534 without restraints) Performing minimization step: 2371. Total energy = 1991.8252 kcal/mol (1989.4617 without restraints) Performing minimization step: 2372. Total energy = 1990.6340 kcal/mol (1988.2712 without restraints) Performing minimization step: 2373. Total energy = 1989.4441 kcal/mol (1987.0819 without restraints) Performing minimization step: 2374. Total energy = 1988.2554 kcal/mol (1985.8939 without restraints) Performing minimization step: 2375. Total energy = 1987.0679 kcal/mol (1984.7071 without restraints) Performing minimization step: 2376. Total energy = 1985.8817 kcal/mol (1983.5215 without restraints) Performing minimization step: 2377. Total energy = 1984.6967 kcal/mol (1982.3371 without restraints) Performing minimization step: 2378. Total energy = 1983.5129 kcal/mol (1981.1540 without restraints) Performing minimization step: 2379. Total energy = 1982.3303 kcal/mol (1979.9721 without restraints) Performing minimization step: 2380. Total energy = 1981.1490 kcal/mol (1978.7914 without restraints) Performing minimization step: 2381. Total energy = 1979.9689 kcal/mol (1977.6120 without restraints) Performing minimization step: 2382. Total energy = 1978.7900 kcal/mol (1976.4337 without restraints) Performing minimization step: 2383. Total energy = 1977.6123 kcal/mol (1975.2567 without restraints) Performing minimization step: 2384. Total energy = 1976.4359 kcal/mol (1974.0810 without restraints) Performing minimization step: 2385. Total energy = 1975.2607 kcal/mol (1972.9064 without restraints) Performing minimization step: 2386. Total energy = 1974.0866 kcal/mol (1971.7329 without restraints) Performing minimization step: 2387. Total energy = 1972.9138 kcal/mol (1970.5608 without restraints) Performing minimization step: 2388. Total energy = 1971.7426 kcal/mol (1969.3902 without restraints) Performing minimization step: 2389. Total energy = 1970.5721 kcal/mol (1968.2204 without restraints) Performing minimization step: 2390. Total energy = 1969.4029 kcal/mol (1967.0518 without restraints) Performing minimization step: 2391. Total energy = 1968.2348 kcal/mol (1965.8844 without restraints) Performing minimization step: 2392. Total energy = 1967.0679 kcal/mol (1964.7182 without restraints) Performing minimization step: 2393. Total energy = 1965.9023 kcal/mol (1963.5532 without restraints) Performing minimization step: 2394. Total energy = 1964.7378 kcal/mol (1962.3893 without restraints) Performing minimization step: 2395. Total energy = 1963.5745 kcal/mol (1961.2267 without restraints) Performing minimization step: 2396. Total energy = 1962.4124 kcal/mol (1960.0652 without restraints) Performing minimization step: 2397. Total energy = 1961.2514 kcal/mol (1958.9049 without restraints) Performing minimization step: 2398. Total energy = 1960.0917 kcal/mol (1957.7458 without restraints) Performing minimization step: 2399. Total energy = 1958.9331 kcal/mol (1956.5879 without restraints) Performing minimization step: 2400. Total energy = 1957.7757 kcal/mol (1955.4311 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 1956.6194 kcal/mol (1954.2755 without restraints) Performing minimization step: 2402. Total energy = 1955.4644 kcal/mol (1953.1211 without restraints) Performing minimization step: 2403. Total energy = 1954.3105 kcal/mol (1951.9678 without restraints) Performing minimization step: 2404. Total energy = 1953.1577 kcal/mol (1950.8157 without restraints) Performing minimization step: 2405. Total energy = 1952.0061 kcal/mol (1949.6648 without restraints) Performing minimization step: 2406. Total energy = 1950.8557 kcal/mol (1948.5150 without restraints) Performing minimization step: 2407. Total energy = 1949.7065 kcal/mol (1947.3664 without restraints) Performing minimization step: 2408. Total energy = 1948.5583 kcal/mol (1946.2189 without restraints) Performing minimization step: 2409. Total energy = 1947.4114 kcal/mol (1945.0726 without restraints) Performing minimization step: 2410. Total energy = 1946.2656 kcal/mol (1943.9274 without restraints) Performing minimization step: 2411. Total energy = 1945.1209 kcal/mol (1942.7835 without restraints) Performing minimization step: 2412. Total energy = 1943.9775 kcal/mol (1941.6406 without restraints) Performing minimization step: 2413. Total energy = 1942.8351 kcal/mol (1940.4989 without restraints) Performing minimization step: 2414. Total energy = 1941.6939 kcal/mol (1939.3583 without restraints) Performing minimization step: 2415. Total energy = 1940.5538 kcal/mol (1938.2189 without restraints) Performing minimization step: 2416. Total energy = 1939.4150 kcal/mol (1937.0807 without restraints) Performing minimization step: 2417. Total energy = 1938.2769 kcal/mol (1935.9433 without restraints) Performing minimization step: 2418. Total energy = 1937.1403 kcal/mol (1934.8072 without restraints) Performing minimization step: 2419. Total energy = 1936.0048 kcal/mol (1933.6724 without restraints) Performing minimization step: 2420. Total energy = 1934.8705 kcal/mol (1932.5389 without restraints) Performing minimization step: 2421. Total energy = 1933.7374 kcal/mol (1931.4063 without restraints) Performing minimization step: 2422. Total energy = 1932.6053 kcal/mol (1930.2748 without restraints) Performing minimization step: 2423. Total energy = 1931.4743 kcal/mol (1929.1444 without restraints) Performing minimization step: 2424. Total energy = 1930.3444 kcal/mol (1928.0152 without restraints) Performing minimization step: 2425. Total energy = 1929.2156 kcal/mol (1926.8870 without restraints) Performing minimization step: 2426. Total energy = 1928.0881 kcal/mol (1925.7602 without restraints) Performing minimization step: 2427. Total energy = 1926.9616 kcal/mol (1924.6343 without restraints) Performing minimization step: 2428. Total energy = 1925.8364 kcal/mol (1923.5097 without restraints) Performing minimization step: 2429. Total energy = 1924.7121 kcal/mol (1922.3860 without restraints) Performing minimization step: 2430. Total energy = 1923.5889 kcal/mol (1921.2635 without restraints) Performing minimization step: 2431. Total energy = 1922.4668 kcal/mol (1920.1420 without restraints) Performing minimization step: 2432. Total energy = 1921.3458 kcal/mol (1919.0217 without restraints) Performing minimization step: 2433. Total energy = 1920.2259 kcal/mol (1917.9024 without restraints) Performing minimization step: 2434. Total energy = 1919.1071 kcal/mol (1916.7842 without restraints) Performing minimization step: 2435. Total energy = 1917.9894 kcal/mol (1915.6672 without restraints) Performing minimization step: 2436. Total energy = 1916.8728 kcal/mol (1914.5511 without restraints) Performing minimization step: 2437. Total energy = 1915.7573 kcal/mol (1913.4363 without restraints) Performing minimization step: 2438. Total energy = 1914.6428 kcal/mol (1912.3225 without restraints) Performing minimization step: 2439. Total energy = 1913.5295 kcal/mol (1911.2097 without restraints) Performing minimization step: 2440. Total energy = 1912.4172 kcal/mol (1910.0981 without restraints) Performing minimization step: 2441. Total energy = 1911.3061 kcal/mol (1908.9876 without restraints) Performing minimization step: 2442. Total energy = 1910.1961 kcal/mol (1907.8782 without restraints) Performing minimization step: 2443. Total energy = 1909.0871 kcal/mol (1906.7699 without restraints) Performing minimization step: 2444. Total energy = 1907.9792 kcal/mol (1905.6626 without restraints) Performing minimization step: 2445. Total energy = 1906.8724 kcal/mol (1904.5565 without restraints) Performing minimization step: 2446. Total energy = 1905.7667 kcal/mol (1903.4513 without restraints) Performing minimization step: 2447. Total energy = 1904.6620 kcal/mol (1902.3473 without restraints) Performing minimization step: 2448. Total energy = 1903.5584 kcal/mol (1901.2443 without restraints) Performing minimization step: 2449. Total energy = 1902.4563 kcal/mol (1900.1428 without restraints) Performing minimization step: 2450. Total energy = 1901.3549 kcal/mol (1899.0420 without restraints) Performing minimization step: 2451. Total energy = 1900.2545 kcal/mol (1897.9422 without restraints) Performing minimization step: 2452. Total energy = 1899.1552 kcal/mol (1896.8435 without restraints) Performing minimization step: 2453. Total energy = 1898.0569 kcal/mol (1895.7460 without restraints) Performing minimization step: 2454. Total energy = 1896.9597 kcal/mol (1894.6494 without restraints) Performing minimization step: 2455. Total energy = 1895.8636 kcal/mol (1893.5539 without restraints) Performing minimization step: 2456. Total energy = 1894.7685 kcal/mol (1892.4594 without restraints) Performing minimization step: 2457. Total energy = 1893.6745 kcal/mol (1891.3660 without restraints) Performing minimization step: 2458. Total energy = 1892.5815 kcal/mol (1890.2736 without restraints) Performing minimization step: 2459. Total energy = 1891.4896 kcal/mol (1889.1823 without restraints) Performing minimization step: 2460. Total energy = 1890.3985 kcal/mol (1888.0919 without restraints) Performing minimization step: 2461. Total energy = 1889.3087 kcal/mol (1887.0027 without restraints) Performing minimization step: 2462. Total energy = 1888.2199 kcal/mol (1885.9145 without restraints) Performing minimization step: 2463. Total energy = 1887.1322 kcal/mol (1884.8274 without restraints) Performing minimization step: 2464. Total energy = 1886.0455 kcal/mol (1883.7413 without restraints) Performing minimization step: 2465. Total energy = 1884.9598 kcal/mol (1882.6563 without restraints) Performing minimization step: 2466. Total energy = 1883.8752 kcal/mol (1881.5723 without restraints) Performing minimization step: 2467. Total energy = 1882.7916 kcal/mol (1880.4893 without restraints) Performing minimization step: 2468. Total energy = 1881.7090 kcal/mol (1879.4073 without restraints) Performing minimization step: 2469. Total energy = 1880.6275 kcal/mol (1878.3264 without restraints) Performing minimization step: 2470. Total energy = 1879.5470 kcal/mol (1877.2465 without restraints) Performing minimization step: 2471. Total energy = 1878.4676 kcal/mol (1876.1677 without restraints) Performing minimization step: 2472. Total energy = 1877.3891 kcal/mol (1875.0899 without restraints) Performing minimization step: 2473. Total energy = 1876.3117 kcal/mol (1874.0131 without restraints) Performing minimization step: 2474. Total energy = 1875.2353 kcal/mol (1872.9373 without restraints) Performing minimization step: 2475. Total energy = 1874.1600 kcal/mol (1871.8625 without restraints) Performing minimization step: 2476. Total energy = 1873.0856 kcal/mol (1870.7888 without restraints) Performing minimization step: 2477. Total energy = 1872.0123 kcal/mol (1869.7161 without restraints) Performing minimization step: 2478. Total energy = 1870.9400 kcal/mol (1868.6443 without restraints) Performing minimization step: 2479. Total energy = 1869.8687 kcal/mol (1867.5737 without restraints) Performing minimization step: 2480. Total energy = 1868.7984 kcal/mol (1866.5040 without restraints) Performing minimization step: 2481. Total energy = 1867.7292 kcal/mol (1865.4355 without restraints) Performing minimization step: 2482. Total energy = 1866.6610 kcal/mol (1864.3678 without restraints) Performing minimization step: 2483. Total energy = 1865.5939 kcal/mol (1863.3014 without restraints) Performing minimization step: 2484. Total energy = 1864.5277 kcal/mol (1862.2357 without restraints) Performing minimization step: 2485. Total energy = 1863.4624 kcal/mol (1861.1711 without restraints) Performing minimization step: 2486. Total energy = 1862.3982 kcal/mol (1860.1074 without restraints) Performing minimization step: 2487. Total energy = 1861.3349 kcal/mol (1859.0448 without restraints) Performing minimization step: 2488. Total energy = 1860.2727 kcal/mol (1857.9831 without restraints) Performing minimization step: 2489. Total energy = 1859.2114 kcal/mol (1856.9225 without restraints) Performing minimization step: 2490. Total energy = 1858.1512 kcal/mol (1855.8628 without restraints) Performing minimization step: 2491. Total energy = 1857.0919 kcal/mol (1854.8042 without restraints) Performing minimization step: 2492. Total energy = 1856.0336 kcal/mol (1853.7465 without restraints) Performing minimization step: 2493. Total energy = 1854.9763 kcal/mol (1852.6898 without restraints) Performing minimization step: 2494. Total energy = 1853.9200 kcal/mol (1851.6341 without restraints) Performing minimization step: 2495. Total energy = 1852.8647 kcal/mol (1850.5794 without restraints) Performing minimization step: 2496. Total energy = 1851.8104 kcal/mol (1849.5256 without restraints) Performing minimization step: 2497. Total energy = 1850.7570 kcal/mol (1848.4729 without restraints) Performing minimization step: 2498. Total energy = 1849.7046 kcal/mol (1847.4211 without restraints) Performing minimization step: 2499. Total energy = 1848.6532 kcal/mol (1846.3703 without restraints) Performing minimization step: 2500. Total energy = 1847.6028 kcal/mol (1845.3205 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 1846.5534 kcal/mol (1844.2716 without restraints) Performing minimization step: 2502. Total energy = 1845.5049 kcal/mol (1843.2238 without restraints) Performing minimization step: 2503. Total energy = 1844.4575 kcal/mol (1842.1769 without restraints) Performing minimization step: 2504. Total energy = 1843.4109 kcal/mol (1841.1309 without restraints) Performing minimization step: 2505. Total energy = 1842.3654 kcal/mol (1840.0860 without restraints) Performing minimization step: 2506. Total energy = 1841.3208 kcal/mol (1839.0420 without restraints) Performing minimization step: 2507. Total energy = 1840.2771 kcal/mol (1837.9989 without restraints) Performing minimization step: 2508. Total energy = 1839.2345 kcal/mol (1836.9569 without restraints) Performing minimization step: 2509. Total energy = 1838.1928 kcal/mol (1835.9158 without restraints) Performing minimization step: 2510. Total energy = 1837.1520 kcal/mol (1834.8756 without restraints) Performing minimization step: 2511. Total energy = 1836.1122 kcal/mol (1833.8364 without restraints) Performing minimization step: 2512. Total energy = 1835.0734 kcal/mol (1832.7982 without restraints) Performing minimization step: 2513. Total energy = 1834.0355 kcal/mol (1831.7609 without restraints) Performing minimization step: 2514. Total energy = 1832.9987 kcal/mol (1830.7248 without restraints) Performing minimization step: 2515. Total energy = 1831.9633 kcal/mol (1829.6898 without restraints) Performing minimization step: 2516. Total energy = 1830.9283 kcal/mol (1828.6554 without restraints) Performing minimization step: 2517. Total energy = 1829.8942 kcal/mol (1827.6219 without restraints) Performing minimization step: 2518. Total energy = 1828.8611 kcal/mol (1826.5894 without restraints) Performing minimization step: 2519. Total energy = 1827.8289 kcal/mol (1825.5578 without restraints) Performing minimization step: 2520. Total energy = 1826.7977 kcal/mol (1824.5271 without restraints) Performing minimization step: 2521. Total energy = 1825.7676 kcal/mol (1823.4976 without restraints) Performing minimization step: 2522. Total energy = 1824.7382 kcal/mol (1822.4689 without restraints) Performing minimization step: 2523. Total energy = 1823.7098 kcal/mol (1821.4410 without restraints) Performing minimization step: 2524. Total energy = 1822.6823 kcal/mol (1820.4141 without restraints) Performing minimization step: 2525. Total energy = 1821.6558 kcal/mol (1819.3882 without restraints) Performing minimization step: 2526. Total energy = 1820.6305 kcal/mol (1818.3634 without restraints) Performing minimization step: 2527. Total energy = 1819.6058 kcal/mol (1817.3394 without restraints) Performing minimization step: 2528. Total energy = 1818.5821 kcal/mol (1816.3162 without restraints) Performing minimization step: 2529. Total energy = 1817.5593 kcal/mol (1815.2940 without restraints) Performing minimization step: 2530. Total energy = 1816.5374 kcal/mol (1814.2727 without restraints) Performing minimization step: 2531. Total energy = 1815.5165 kcal/mol (1813.2523 without restraints) Performing minimization step: 2532. Total energy = 1814.4965 kcal/mol (1812.2329 without restraints) Performing minimization step: 2533. Total energy = 1813.4776 kcal/mol (1811.2146 without restraints) Performing minimization step: 2534. Total energy = 1812.4594 kcal/mol (1810.1970 without restraints) Performing minimization step: 2535. Total energy = 1811.4421 kcal/mol (1809.1803 without restraints) Performing minimization step: 2536. Total energy = 1810.4258 kcal/mol (1808.1646 without restraints) Performing minimization step: 2537. Total energy = 1809.4104 kcal/mol (1807.1497 without restraints) Performing minimization step: 2538. Total energy = 1808.3959 kcal/mol (1806.1358 without restraints) Performing minimization step: 2539. Total energy = 1807.3823 kcal/mol (1805.1228 without restraints) Performing minimization step: 2540. Total energy = 1806.3696 kcal/mol (1804.1106 without restraints) Performing minimization step: 2541. Total energy = 1805.3578 kcal/mol (1803.0994 without restraints) Performing minimization step: 2542. Total energy = 1804.3471 kcal/mol (1802.0893 without restraints) Performing minimization step: 2543. Total energy = 1803.3372 kcal/mol (1801.0799 without restraints) Performing minimization step: 2544. Total energy = 1802.3281 kcal/mol (1800.0715 without restraints) Performing minimization step: 2545. Total energy = 1801.3201 kcal/mol (1799.0641 without restraints) Performing minimization step: 2546. Total energy = 1800.3129 kcal/mol (1798.0574 without restraints) Performing minimization step: 2547. Total energy = 1799.3066 kcal/mol (1797.0517 without restraints) Performing minimization step: 2548. Total energy = 1798.3012 kcal/mol (1796.0468 without restraints) Performing minimization step: 2549. Total energy = 1797.2966 kcal/mol (1795.0428 without restraints) Performing minimization step: 2550. Total energy = 1796.2930 kcal/mol (1794.0398 without restraints) Performing minimization step: 2551. Total energy = 1795.2902 kcal/mol (1793.0376 without restraints) Performing minimization step: 2552. Total energy = 1794.2884 kcal/mol (1792.0363 without restraints) Performing minimization step: 2553. Total energy = 1793.2876 kcal/mol (1791.0361 without restraints) Performing minimization step: 2554. Total energy = 1792.2876 kcal/mol (1790.0366 without restraints) Performing minimization step: 2555. Total energy = 1791.2884 kcal/mol (1789.0380 without restraints) Performing minimization step: 2556. Total energy = 1790.2901 kcal/mol (1788.0403 without restraints) Performing minimization step: 2557. Total energy = 1789.2927 kcal/mol (1787.0435 without restraints) Performing minimization step: 2558. Total energy = 1788.2962 kcal/mol (1786.0475 without restraints) Performing minimization step: 2559. Total energy = 1787.3006 kcal/mol (1785.0525 without restraints) Performing minimization step: 2560. Total energy = 1786.3058 kcal/mol (1784.0583 without restraints) Performing minimization step: 2561. Total energy = 1785.3122 kcal/mol (1783.0652 without restraints) Performing minimization step: 2562. Total energy = 1784.3192 kcal/mol (1782.0728 without restraints) Performing minimization step: 2563. Total energy = 1783.3271 kcal/mol (1781.0813 without restraints) Performing minimization step: 2564. Total energy = 1782.3359 kcal/mol (1780.0906 without restraints) Performing minimization step: 2565. Total energy = 1781.3456 kcal/mol (1779.1008 without restraints) Performing minimization step: 2566. Total energy = 1780.3561 kcal/mol (1778.1119 without restraints) Performing minimization step: 2567. Total energy = 1779.3675 kcal/mol (1777.1239 without restraints) Performing minimization step: 2568. Total energy = 1778.3798 kcal/mol (1776.1367 without restraints) Performing minimization step: 2569. Total energy = 1777.3930 kcal/mol (1775.1504 without restraints) Performing minimization step: 2570. Total energy = 1776.4070 kcal/mol (1774.1650 without restraints) Performing minimization step: 2571. Total energy = 1775.4219 kcal/mol (1773.1805 without restraints) Performing minimization step: 2572. Total energy = 1774.4376 kcal/mol (1772.1968 without restraints) Performing minimization step: 2573. Total energy = 1773.4543 kcal/mol (1771.2140 without restraints) Performing minimization step: 2574. Total energy = 1772.4717 kcal/mol (1770.2320 without restraints) Performing minimization step: 2575. Total energy = 1771.4901 kcal/mol (1769.2509 without restraints) Performing minimization step: 2576. Total energy = 1770.5093 kcal/mol (1768.2707 without restraints) Performing minimization step: 2577. Total energy = 1769.5294 kcal/mol (1767.2913 without restraints) Performing minimization step: 2578. Total energy = 1768.5503 kcal/mol (1766.3128 without restraints) Performing minimization step: 2579. Total energy = 1767.5719 kcal/mol (1765.3349 without restraints) Performing minimization step: 2580. Total energy = 1766.5945 kcal/mol (1764.3581 without restraints) Performing minimization step: 2581. Total energy = 1765.6180 kcal/mol (1763.3821 without restraints) Performing minimization step: 2582. Total energy = 1764.6423 kcal/mol (1762.4070 without restraints) Performing minimization step: 2583. Total energy = 1763.6675 kcal/mol (1761.4328 without restraints) Performing minimization step: 2584. Total energy = 1762.6936 kcal/mol (1760.4594 without restraints) Performing minimization step: 2585. Total energy = 1761.7205 kcal/mol (1759.4868 without restraints) Performing minimization step: 2586. Total energy = 1760.7483 kcal/mol (1758.5153 without restraints) Performing minimization step: 2587. Total energy = 1759.7770 kcal/mol (1757.5444 without restraints) Performing minimization step: 2588. Total energy = 1758.8064 kcal/mol (1756.5744 without restraints) Performing minimization step: 2589. Total energy = 1757.8367 kcal/mol (1755.6052 without restraints) Performing minimization step: 2590. Total energy = 1756.8678 kcal/mol (1754.6369 without restraints) Performing minimization step: 2591. Total energy = 1755.9000 kcal/mol (1753.6697 without restraints) Performing minimization step: 2592. Total energy = 1754.9329 kcal/mol (1752.7030 without restraints) Performing minimization step: 2593. Total energy = 1753.9665 kcal/mol (1751.7372 without restraints) Performing minimization step: 2594. Total energy = 1753.0010 kcal/mol (1750.7722 without restraints) Performing minimization step: 2595. Total energy = 1752.0363 kcal/mol (1749.8081 without restraints) Performing minimization step: 2596. Total energy = 1751.0726 kcal/mol (1748.8450 without restraints) Performing minimization step: 2597. Total energy = 1750.1093 kcal/mol (1747.8822 without restraints) Performing minimization step: 2598. Total energy = 1749.1471 kcal/mol (1746.9205 without restraints) Performing minimization step: 2599. Total energy = 1748.1858 kcal/mol (1745.9597 without restraints) Performing minimization step: 2600. Total energy = 1747.2253 kcal/mol (1744.9998 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 1746.2656 kcal/mol (1744.0406 without restraints) Performing minimization step: 2602. Total energy = 1745.3067 kcal/mol (1743.0823 without restraints) Performing minimization step: 2603. Total energy = 1744.3485 kcal/mol (1742.1246 without restraints) Performing minimization step: 2604. Total energy = 1743.3913 kcal/mol (1741.1680 without restraints) Performing minimization step: 2605. Total energy = 1742.4350 kcal/mol (1740.2121 without restraints) Performing minimization step: 2606. Total energy = 1741.4793 kcal/mol (1739.2569 without restraints) Performing minimization step: 2607. Total energy = 1740.5244 kcal/mol (1738.3027 without restraints) Performing minimization step: 2608. Total energy = 1739.5705 kcal/mol (1737.3493 without restraints) Performing minimization step: 2609. Total energy = 1738.6174 kcal/mol (1736.3967 without restraints) Performing minimization step: 2610. Total energy = 1737.6651 kcal/mol (1735.4450 without restraints) Performing minimization step: 2611. Total energy = 1736.7137 kcal/mol (1734.4941 without restraints) Performing minimization step: 2612. Total energy = 1735.7630 kcal/mol (1733.5439 without restraints) Performing minimization step: 2613. Total energy = 1734.8132 kcal/mol (1732.5946 without restraints) Performing minimization step: 2614. Total energy = 1733.8641 kcal/mol (1731.6461 without restraints) Performing minimization step: 2615. Total energy = 1732.9159 kcal/mol (1730.6985 without restraints) Performing minimization step: 2616. Total energy = 1731.9685 kcal/mol (1729.7516 without restraints) Performing minimization step: 2617. Total energy = 1731.0219 kcal/mol (1728.8055 without restraints) Performing minimization step: 2618. Total energy = 1730.0762 kcal/mol (1727.8603 without restraints) Performing minimization step: 2619. Total energy = 1729.1312 kcal/mol (1726.9158 without restraints) Performing minimization step: 2620. Total energy = 1728.1870 kcal/mol (1725.9722 without restraints) Performing minimization step: 2621. Total energy = 1727.2436 kcal/mol (1725.0293 without restraints) Performing minimization step: 2622. Total energy = 1726.3011 kcal/mol (1724.0873 without restraints) Performing minimization step: 2623. Total energy = 1725.3593 kcal/mol (1723.1461 without restraints) Performing minimization step: 2624. Total energy = 1724.4184 kcal/mol (1722.2057 without restraints) Performing minimization step: 2625. Total energy = 1723.4782 kcal/mol (1721.2660 without restraints) Performing minimization step: 2626. Total energy = 1722.5387 kcal/mol (1720.3270 without restraints) Performing minimization step: 2627. Total energy = 1721.6001 kcal/mol (1719.3889 without restraints) Performing minimization step: 2628. Total energy = 1720.6623 kcal/mol (1718.4517 without restraints) Performing minimization step: 2629. Total energy = 1719.7253 kcal/mol (1717.5152 without restraints) Performing minimization step: 2630. Total energy = 1718.7892 kcal/mol (1716.5796 without restraints) Performing minimization step: 2631. Total energy = 1717.8538 kcal/mol (1715.6447 without restraints) Performing minimization step: 2632. Total energy = 1716.9192 kcal/mol (1714.7106 without restraints) Performing minimization step: 2633. Total energy = 1715.9854 kcal/mol (1713.7774 without restraints) Performing minimization step: 2634. Total energy = 1715.0524 kcal/mol (1712.8449 without restraints) Performing minimization step: 2635. Total energy = 1714.1202 kcal/mol (1711.9132 without restraints) Performing minimization step: 2636. Total energy = 1713.1887 kcal/mol (1710.9823 without restraints) Performing minimization step: 2637. Total energy = 1712.2581 kcal/mol (1710.0521 without restraints) Performing minimization step: 2638. Total energy = 1711.3282 kcal/mol (1709.1228 without restraints) Performing minimization step: 2639. Total energy = 1710.3991 kcal/mol (1708.1942 without restraints) Performing minimization step: 2640. Total energy = 1709.4708 kcal/mol (1707.2664 without restraints) Performing minimization step: 2641. Total energy = 1708.5433 kcal/mol (1706.3394 without restraints) Performing minimization step: 2642. Total energy = 1707.6166 kcal/mol (1705.4132 without restraints) Performing minimization step: 2643. Total energy = 1706.6906 kcal/mol (1704.4878 without restraints) Performing minimization step: 2644. Total energy = 1705.7655 kcal/mol (1703.5631 without restraints) Performing minimization step: 2645. Total energy = 1704.8412 kcal/mol (1702.6394 without restraints) Performing minimization step: 2646. Total energy = 1703.9176 kcal/mol (1701.7163 without restraints) Performing minimization step: 2647. Total energy = 1702.9950 kcal/mol (1700.7942 without restraints) Performing minimization step: 2648. Total energy = 1702.0730 kcal/mol (1699.8727 without restraints) Performing minimization step: 2649. Total energy = 1701.1517 kcal/mol (1698.9519 without restraints) Performing minimization step: 2650. Total energy = 1700.2312 kcal/mol (1698.0319 without restraints) Performing minimization step: 2651. Total energy = 1699.3115 kcal/mol (1697.1127 without restraints) Performing minimization step: 2652. Total energy = 1698.3925 kcal/mol (1696.1942 without restraints) Performing minimization step: 2653. Total energy = 1697.4743 kcal/mol (1695.2765 without restraints) Performing minimization step: 2654. Total energy = 1696.5568 kcal/mol (1694.3596 without restraints) Performing minimization step: 2655. Total energy = 1695.6401 kcal/mol (1693.4434 without restraints) Performing minimization step: 2656. Total energy = 1694.7242 kcal/mol (1692.5280 without restraints) Performing minimization step: 2657. Total energy = 1693.8091 kcal/mol (1691.6133 without restraints) Performing minimization step: 2658. Total energy = 1692.8946 kcal/mol (1690.6994 without restraints) Performing minimization step: 2659. Total energy = 1691.9810 kcal/mol (1689.7863 without restraints) Performing minimization step: 2660. Total energy = 1691.0681 kcal/mol (1688.8739 without restraints) Performing minimization step: 2661. Total energy = 1690.1560 kcal/mol (1687.9623 without restraints) Performing minimization step: 2662. Total energy = 1689.2446 kcal/mol (1687.0514 without restraints) Performing minimization step: 2663. Total energy = 1688.3341 kcal/mol (1686.1414 without restraints) Performing minimization step: 2664. Total energy = 1687.4242 kcal/mol (1685.2320 without restraints) Performing minimization step: 2665. Total energy = 1686.5152 kcal/mol (1684.3235 without restraints) Performing minimization step: 2666. Total energy = 1685.6068 kcal/mol (1683.4156 without restraints) Performing minimization step: 2667. Total energy = 1684.6993 kcal/mol (1682.5086 without restraints) Performing minimization step: 2668. Total energy = 1683.7925 kcal/mol (1681.6023 without restraints) Performing minimization step: 2669. Total energy = 1682.8864 kcal/mol (1680.6967 without restraints) Performing minimization step: 2670. Total energy = 1681.9811 kcal/mol (1679.7919 without restraints) Performing minimization step: 2671. Total energy = 1681.0766 kcal/mol (1678.8878 without restraints) Performing minimization step: 2672. Total energy = 1680.1728 kcal/mol (1677.9845 without restraints) Performing minimization step: 2673. Total energy = 1679.2697 kcal/mol (1677.0820 without restraints) Performing minimization step: 2674. Total energy = 1678.3674 kcal/mol (1676.1802 without restraints) Performing minimization step: 2675. Total energy = 1677.4658 kcal/mol (1675.2791 without restraints) Performing minimization step: 2676. Total energy = 1676.5650 kcal/mol (1674.3788 without restraints) Performing minimization step: 2677. Total energy = 1675.6649 kcal/mol (1673.4792 without restraints) Performing minimization step: 2678. Total energy = 1674.7656 kcal/mol (1672.5803 without restraints) Performing minimization step: 2679. Total energy = 1673.8670 kcal/mol (1671.6822 without restraints) Performing minimization step: 2680. Total energy = 1672.9691 kcal/mol (1670.7849 without restraints) Performing minimization step: 2681. Total energy = 1672.0720 kcal/mol (1669.8882 without restraints) Performing minimization step: 2682. Total energy = 1671.1757 kcal/mol (1668.9924 without restraints) Performing minimization step: 2683. Total energy = 1670.2801 kcal/mol (1668.0973 without restraints) Performing minimization step: 2684. Total energy = 1669.3852 kcal/mol (1667.2029 without restraints) Performing minimization step: 2685. Total energy = 1668.4910 kcal/mol (1666.3092 without restraints) Performing minimization step: 2686. Total energy = 1667.5976 kcal/mol (1665.4163 without restraints) Performing minimization step: 2687. Total energy = 1666.7050 kcal/mol (1664.5241 without restraints) Performing minimization step: 2688. Total energy = 1665.8128 kcal/mol (1663.6325 without restraints) Performing minimization step: 2689. Total energy = 1664.9217 kcal/mol (1662.7420 without restraints) Performing minimization step: 2690. Total energy = 1664.0316 kcal/mol (1661.8522 without restraints) Performing minimization step: 2691. Total energy = 1663.1418 kcal/mol (1660.9629 without restraints) Performing minimization step: 2692. Total energy = 1662.2528 kcal/mol (1660.0744 without restraints) Performing minimization step: 2693. Total energy = 1661.3645 kcal/mol (1659.1865 without restraints) Performing minimization step: 2694. Total energy = 1660.4769 kcal/mol (1658.2994 without restraints) Performing minimization step: 2695. Total energy = 1659.5901 kcal/mol (1657.4131 without restraints) Performing minimization step: 2696. Total energy = 1658.7040 kcal/mol (1656.5275 without restraints) Performing minimization step: 2697. Total energy = 1657.8186 kcal/mol (1655.6425 without restraints) Performing minimization step: 2698. Total energy = 1656.9339 kcal/mol (1654.7583 without restraints) Performing minimization step: 2699. Total energy = 1656.0499 kcal/mol (1653.8749 without restraints) Performing minimization step: 2700. Total energy = 1655.1668 kcal/mol (1652.9922 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 1654.2843 kcal/mol (1652.1102 without restraints) Performing minimization step: 2702. Total energy = 1653.4026 kcal/mol (1651.2291 without restraints) Performing minimization step: 2703. Total energy = 1652.5217 kcal/mol (1650.3485 without restraints) Performing minimization step: 2704. Total energy = 1651.6413 kcal/mol (1649.4687 without restraints) Performing minimization step: 2705. Total energy = 1650.7619 kcal/mol (1648.5897 without restraints) Performing minimization step: 2706. Total energy = 1649.8830 kcal/mol (1647.7113 without restraints) Performing minimization step: 2707. Total energy = 1649.0051 kcal/mol (1646.8339 without restraints) Performing minimization step: 2708. Total energy = 1648.1279 kcal/mol (1645.9571 without restraints) Performing minimization step: 2709. Total energy = 1647.2511 kcal/mol (1645.0808 without restraints) Performing minimization step: 2710. Total energy = 1646.3751 kcal/mol (1644.2052 without restraints) Performing minimization step: 2711. Total energy = 1645.4997 kcal/mol (1643.3304 without restraints) Performing minimization step: 2712. Total energy = 1644.6251 kcal/mol (1642.4562 without restraints) Performing minimization step: 2713. Total energy = 1643.7512 kcal/mol (1641.5828 without restraints) Performing minimization step: 2714. Total energy = 1642.8780 kcal/mol (1640.7100 without restraints) Performing minimization step: 2715. Total energy = 1642.0053 kcal/mol (1639.8378 without restraints) Performing minimization step: 2716. Total energy = 1641.1335 kcal/mol (1638.9665 without restraints) Performing minimization step: 2717. Total energy = 1640.2624 kcal/mol (1638.0959 without restraints) Performing minimization step: 2718. Total energy = 1639.3921 kcal/mol (1637.2260 without restraints) Performing minimization step: 2719. Total energy = 1638.5230 kcal/mol (1636.3574 without restraints) Performing minimization step: 2720. Total energy = 1637.6540 kcal/mol (1635.4889 without restraints) Performing minimization step: 2721. Total energy = 1636.7860 kcal/mol (1634.6213 without restraints) Performing minimization step: 2722. Total energy = 1635.9186 kcal/mol (1633.7544 without restraints) Performing minimization step: 2723. Total energy = 1635.0518 kcal/mol (1632.8880 without restraints) Performing minimization step: 2724. Total energy = 1634.1856 kcal/mol (1632.0224 without restraints) Performing minimization step: 2725. Total energy = 1633.3201 kcal/mol (1631.1573 without restraints) Performing minimization step: 2726. Total energy = 1632.4554 kcal/mol (1630.2930 without restraints) Performing minimization step: 2727. Total energy = 1631.5913 kcal/mol (1629.4294 without restraints) Performing minimization step: 2728. Total energy = 1630.7280 kcal/mol (1628.5665 without restraints) Performing minimization step: 2729. Total energy = 1629.8651 kcal/mol (1627.7042 without restraints) Performing minimization step: 2730. Total energy = 1629.0032 kcal/mol (1626.8427 without restraints) Performing minimization step: 2731. Total energy = 1628.1419 kcal/mol (1625.9819 without restraints) Performing minimization step: 2732. Total energy = 1627.2814 kcal/mol (1625.1218 without restraints) Performing minimization step: 2733. Total energy = 1626.4219 kcal/mol (1624.2628 without restraints) Performing minimization step: 2734. Total energy = 1625.5628 kcal/mol (1623.4041 without restraints) Performing minimization step: 2735. Total energy = 1624.7043 kcal/mol (1622.5461 without restraints) Performing minimization step: 2736. Total energy = 1623.8467 kcal/mol (1621.6889 without restraints) Performing minimization step: 2737. Total energy = 1622.9895 kcal/mol (1620.8322 without restraints) Performing minimization step: 2738. Total energy = 1622.1331 kcal/mol (1619.9763 without restraints) Performing minimization step: 2739. Total energy = 1621.2774 kcal/mol (1619.1210 without restraints) Performing minimization step: 2740. Total energy = 1620.4228 kcal/mol (1618.2670 without restraints) Performing minimization step: 2741. Total energy = 1619.5685 kcal/mol (1617.4131 without restraints) Performing minimization step: 2742. Total energy = 1618.7149 kcal/mol (1616.5598 without restraints) Performing minimization step: 2743. Total energy = 1617.8619 kcal/mol (1615.7073 without restraints) Performing minimization step: 2744. Total energy = 1617.0096 kcal/mol (1614.8554 without restraints) Performing minimization step: 2745. Total energy = 1616.1579 kcal/mol (1614.0043 without restraints) Performing minimization step: 2746. Total energy = 1615.3070 kcal/mol (1613.1538 without restraints) Performing minimization step: 2747. Total energy = 1614.4567 kcal/mol (1612.3040 without restraints) Performing minimization step: 2748. Total energy = 1613.6072 kcal/mol (1611.4548 without restraints) Performing minimization step: 2749. Total energy = 1612.7583 kcal/mol (1610.6064 without restraints) Performing minimization step: 2750. Total energy = 1611.9100 kcal/mol (1609.7586 without restraints) Performing minimization step: 2751. Total energy = 1611.0625 kcal/mol (1608.9115 without restraints) Performing minimization step: 2752. Total energy = 1610.2156 kcal/mol (1608.0651 without restraints) Performing minimization step: 2753. Total energy = 1609.3695 kcal/mol (1607.2194 without restraints) Performing minimization step: 2754. Total energy = 1608.5240 kcal/mol (1606.3743 without restraints) Performing minimization step: 2755. Total energy = 1607.6791 kcal/mol (1605.5299 without restraints) Performing minimization step: 2756. Total energy = 1606.8350 kcal/mol (1604.6863 without restraints) Performing minimization step: 2757. Total energy = 1605.9916 kcal/mol (1603.8433 without restraints) Performing minimization step: 2758. Total energy = 1605.1488 kcal/mol (1603.0009 without restraints) Performing minimization step: 2759. Total energy = 1604.3064 kcal/mol (1602.1590 without restraints) Performing minimization step: 2760. Total energy = 1603.4650 kcal/mol (1601.3180 without restraints) Performing minimization step: 2761. Total energy = 1602.6242 kcal/mol (1600.4777 without restraints) Performing minimization step: 2762. Total energy = 1601.7841 kcal/mol (1599.6380 without restraints) Performing minimization step: 2763. Total energy = 1600.9445 kcal/mol (1598.7988 without restraints) Performing minimization step: 2764. Total energy = 1600.1054 kcal/mol (1597.9602 without restraints) Performing minimization step: 2765. Total energy = 1599.2673 kcal/mol (1597.1225 without restraints) Performing minimization step: 2766. Total energy = 1598.4298 kcal/mol (1596.2854 without restraints) Performing minimization step: 2767. Total energy = 1597.5930 kcal/mol (1595.4491 without restraints) Performing minimization step: 2768. Total energy = 1596.7571 kcal/mol (1594.6137 without restraints) Performing minimization step: 2769. Total energy = 1595.9217 kcal/mol (1593.7787 without restraints) Performing minimization step: 2770. Total energy = 1595.0869 kcal/mol (1592.9443 without restraints) Performing minimization step: 2771. Total energy = 1594.2528 kcal/mol (1592.1107 without restraints) Performing minimization step: 2772. Total energy = 1593.4196 kcal/mol (1591.2779 without restraints) Performing minimization step: 2773. Total energy = 1592.5868 kcal/mol (1590.4455 without restraints) Performing minimization step: 2774. Total energy = 1591.7546 kcal/mol (1589.6138 without restraints) Performing minimization step: 2775. Total energy = 1590.9232 kcal/mol (1588.7827 without restraints) Performing minimization step: 2776. Total energy = 1590.0923 kcal/mol (1587.9524 without restraints) Performing minimization step: 2777. Total energy = 1589.2622 kcal/mol (1587.1226 without restraints) Performing minimization step: 2778. Total energy = 1588.4327 kcal/mol (1586.2936 without restraints) Performing minimization step: 2779. Total energy = 1587.6038 kcal/mol (1585.4652 without restraints) Performing minimization step: 2780. Total energy = 1586.7758 kcal/mol (1584.6376 without restraints) Performing minimization step: 2781. Total energy = 1585.9484 kcal/mol (1583.8105 without restraints) Performing minimization step: 2782. Total energy = 1585.1215 kcal/mol (1582.9841 without restraints) Performing minimization step: 2783. Total energy = 1584.2953 kcal/mol (1582.1583 without restraints) Performing minimization step: 2784. Total energy = 1583.4697 kcal/mol (1581.3331 without restraints) Performing minimization step: 2785. Total energy = 1582.6445 kcal/mol (1580.5084 without restraints) Performing minimization step: 2786. Total energy = 1581.8202 kcal/mol (1579.6845 without restraints) Performing minimization step: 2787. Total energy = 1580.9966 kcal/mol (1578.8614 without restraints) Performing minimization step: 2788. Total energy = 1580.1739 kcal/mol (1578.0390 without restraints) Performing minimization step: 2789. Total energy = 1579.3516 kcal/mol (1577.2171 without restraints) Performing minimization step: 2790. Total energy = 1578.5299 kcal/mol (1576.3959 without restraints) Performing minimization step: 2791. Total energy = 1577.7089 kcal/mol (1575.5753 without restraints) Performing minimization step: 2792. Total energy = 1576.8888 kcal/mol (1574.7556 without restraints) Performing minimization step: 2793. Total energy = 1576.0691 kcal/mol (1573.9363 without restraints) Performing minimization step: 2794. Total energy = 1575.2500 kcal/mol (1573.1177 without restraints) Performing minimization step: 2795. Total energy = 1574.4316 kcal/mol (1572.2997 without restraints) Performing minimization step: 2796. Total energy = 1573.6139 kcal/mol (1571.4824 without restraints) Performing minimization step: 2797. Total energy = 1572.7967 kcal/mol (1570.6657 without restraints) Performing minimization step: 2798. Total energy = 1571.9803 kcal/mol (1569.8496 without restraints) Performing minimization step: 2799. Total energy = 1571.1644 kcal/mol (1569.0342 without restraints) Performing minimization step: 2800. Total energy = 1570.3492 kcal/mol (1568.2194 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 1569.5347 kcal/mol (1567.4053 without restraints) Performing minimization step: 2802. Total energy = 1568.7208 kcal/mol (1566.5918 without restraints) Performing minimization step: 2803. Total energy = 1567.9074 kcal/mol (1565.7789 without restraints) Performing minimization step: 2804. Total energy = 1567.0948 kcal/mol (1564.9667 without restraints) Performing minimization step: 2805. Total energy = 1566.2828 kcal/mol (1564.1551 without restraints) Performing minimization step: 2806. Total energy = 1565.4715 kcal/mol (1563.3441 without restraints) Performing minimization step: 2807. Total energy = 1564.6607 kcal/mol (1562.5338 without restraints) Performing minimization step: 2808. Total energy = 1563.8507 kcal/mol (1561.7242 without restraints) Performing minimization step: 2809. Total energy = 1563.0413 kcal/mol (1560.9152 without restraints) Performing minimization step: 2810. Total energy = 1562.2325 kcal/mol (1560.1068 without restraints) Performing minimization step: 2811. Total energy = 1561.4243 kcal/mol (1559.2991 without restraints) Performing minimization step: 2812. Total energy = 1560.6168 kcal/mol (1558.4920 without restraints) Performing minimization step: 2813. Total energy = 1559.8099 kcal/mol (1557.6855 without restraints) Performing minimization step: 2814. Total energy = 1559.0037 kcal/mol (1556.8796 without restraints) Performing minimization step: 2815. Total energy = 1558.1980 kcal/mol (1556.0744 without restraints) Performing minimization step: 2816. Total energy = 1557.3932 kcal/mol (1555.2700 without restraints) Performing minimization step: 2817. Total energy = 1556.5888 kcal/mol (1554.4660 without restraints) Performing minimization step: 2818. Total energy = 1555.7849 kcal/mol (1553.6625 without restraints) Performing minimization step: 2819. Total energy = 1554.9818 kcal/mol (1552.8598 without restraints) Performing minimization step: 2820. Total energy = 1554.1793 kcal/mol (1552.0577 without restraints) Performing minimization step: 2821. Total energy = 1553.3775 kcal/mol (1551.2563 without restraints) Performing minimization step: 2822. Total energy = 1552.5763 kcal/mol (1550.4555 without restraints) Performing minimization step: 2823. Total energy = 1551.7757 kcal/mol (1549.6553 without restraints) Performing minimization step: 2824. Total energy = 1550.9757 kcal/mol (1548.8557 without restraints) Performing minimization step: 2825. Total energy = 1550.1764 kcal/mol (1548.0568 without restraints) Performing minimization step: 2826. Total energy = 1549.3776 kcal/mol (1547.2584 without restraints) Performing minimization step: 2827. Total energy = 1548.5795 kcal/mol (1546.4607 without restraints) Performing minimization step: 2828. Total energy = 1547.7820 kcal/mol (1545.6637 without restraints) Performing minimization step: 2829. Total energy = 1546.9852 kcal/mol (1544.8672 without restraints) Performing minimization step: 2830. Total energy = 1546.1892 kcal/mol (1544.0716 without restraints) Performing minimization step: 2831. Total energy = 1545.3936 kcal/mol (1543.2764 without restraints) Performing minimization step: 2832. Total energy = 1544.5988 kcal/mol (1542.4820 without restraints) Performing minimization step: 2833. Total energy = 1543.8044 kcal/mol (1541.6881 without restraints) Performing minimization step: 2834. Total energy = 1543.0107 kcal/mol (1540.8947 without restraints) Performing minimization step: 2835. Total energy = 1542.2178 kcal/mol (1540.1022 without restraints) Performing minimization step: 2836. Total energy = 1541.4253 kcal/mol (1539.3101 without restraints) Performing minimization step: 2837. Total energy = 1540.6334 kcal/mol (1538.5186 without restraints) Performing minimization step: 2838. Total energy = 1539.8421 kcal/mol (1537.7277 without restraints) Performing minimization step: 2839. Total energy = 1539.0517 kcal/mol (1536.9377 without restraints) Performing minimization step: 2840. Total energy = 1538.2617 kcal/mol (1536.1481 without restraints) Performing minimization step: 2841. Total energy = 1537.4723 kcal/mol (1535.3591 without restraints) Performing minimization step: 2842. Total energy = 1536.6835 kcal/mol (1534.5707 without restraints) Performing minimization step: 2843. Total energy = 1535.8954 kcal/mol (1533.7831 without restraints) Performing minimization step: 2844. Total energy = 1535.1079 kcal/mol (1532.9959 without restraints) Performing minimization step: 2845. Total energy = 1534.3210 kcal/mol (1532.2093 without restraints) Performing minimization step: 2846. Total energy = 1533.5346 kcal/mol (1531.4234 without restraints) Performing minimization step: 2847. Total energy = 1532.7489 kcal/mol (1530.6380 without restraints) Performing minimization step: 2848. Total energy = 1531.9638 kcal/mol (1529.8533 without restraints) Performing minimization step: 2849. Total energy = 1531.1795 kcal/mol (1529.0694 without restraints) Performing minimization step: 2850. Total energy = 1530.3956 kcal/mol (1528.2859 without restraints) Performing minimization step: 2851. Total energy = 1529.6123 kcal/mol (1527.5030 without restraints) Performing minimization step: 2852. Total energy = 1528.8297 kcal/mol (1526.7207 without restraints) Performing minimization step: 2853. Total energy = 1528.0476 kcal/mol (1525.9390 without restraints) Performing minimization step: 2854. Total energy = 1527.2661 kcal/mol (1525.1579 without restraints) Performing minimization step: 2855. Total energy = 1526.4853 kcal/mol (1524.3775 without restraints) Performing minimization step: 2856. Total energy = 1525.7050 kcal/mol (1523.5976 without restraints) Performing minimization step: 2857. Total energy = 1524.9256 kcal/mol (1522.8186 without restraints) Performing minimization step: 2858. Total energy = 1524.1466 kcal/mol (1522.0400 without restraints) Performing minimization step: 2859. Total energy = 1523.3682 kcal/mol (1521.2619 without restraints) Performing minimization step: 2860. Total energy = 1522.5904 kcal/mol (1520.4845 without restraints) Performing minimization step: 2861. Total energy = 1521.8132 kcal/mol (1519.7077 without restraints) Performing minimization step: 2862. Total energy = 1521.0368 kcal/mol (1518.9317 without restraints) Performing minimization step: 2863. Total energy = 1520.2608 kcal/mol (1518.1560 without restraints) Performing minimization step: 2864. Total energy = 1519.4854 kcal/mol (1517.3810 without restraints) Performing minimization step: 2865. Total energy = 1518.7108 kcal/mol (1516.6068 without restraints) Performing minimization step: 2866. Total energy = 1517.9368 kcal/mol (1515.8332 without restraints) Performing minimization step: 2867. Total energy = 1517.1632 kcal/mol (1515.0599 without restraints) Performing minimization step: 2868. Total energy = 1516.3902 kcal/mol (1514.2873 without restraints) Performing minimization step: 2869. Total energy = 1515.6178 kcal/mol (1513.5153 without restraints) Performing minimization step: 2870. Total energy = 1514.8460 kcal/mol (1512.7438 without restraints) Performing minimization step: 2871. Total energy = 1514.0748 kcal/mol (1511.9730 without restraints) Performing minimization step: 2872. Total energy = 1513.3041 kcal/mol (1511.2028 without restraints) Performing minimization step: 2873. Total energy = 1512.5341 kcal/mol (1510.4331 without restraints) Performing minimization step: 2874. Total energy = 1511.7647 kcal/mol (1509.6640 without restraints) Performing minimization step: 2875. Total energy = 1510.9959 kcal/mol (1508.8956 without restraints) Performing minimization step: 2876. Total energy = 1510.2276 kcal/mol (1508.1277 without restraints) Performing minimization step: 2877. Total energy = 1509.4600 kcal/mol (1507.3605 without restraints) Performing minimization step: 2878. Total energy = 1508.6930 kcal/mol (1506.5938 without restraints) Performing minimization step: 2879. Total energy = 1507.9265 kcal/mol (1505.8277 without restraints) Performing minimization step: 2880. Total energy = 1507.1607 kcal/mol (1505.0622 without restraints) Performing minimization step: 2881. Total energy = 1506.3954 kcal/mol (1504.2974 without restraints) Performing minimization step: 2882. Total energy = 1505.6307 kcal/mol (1503.5331 without restraints) Performing minimization step: 2883. Total energy = 1504.8668 kcal/mol (1502.7696 without restraints) Performing minimization step: 2884. Total energy = 1504.1034 kcal/mol (1502.0064 without restraints) Performing minimization step: 2885. Total energy = 1503.3405 kcal/mol (1501.2439 without restraints) Performing minimization step: 2886. Total energy = 1502.5782 kcal/mol (1500.4820 without restraints) Performing minimization step: 2887. Total energy = 1501.8165 kcal/mol (1499.7206 without restraints) Performing minimization step: 2888. Total energy = 1501.0554 kcal/mol (1498.9599 without restraints) Performing minimization step: 2889. Total energy = 1500.2949 kcal/mol (1498.1997 without restraints) Performing minimization step: 2890. Total energy = 1499.5349 kcal/mol (1497.4402 without restraints) Performing minimization step: 2891. Total energy = 1498.7756 kcal/mol (1496.6812 without restraints) Performing minimization step: 2892. Total energy = 1498.0168 kcal/mol (1495.9227 without restraints) Performing minimization step: 2893. Total energy = 1497.2586 kcal/mol (1495.1649 without restraints) Performing minimization step: 2894. Total energy = 1496.5010 kcal/mol (1494.4077 without restraints) Performing minimization step: 2895. Total energy = 1495.7440 kcal/mol (1493.6510 without restraints) Performing minimization step: 2896. Total energy = 1494.9875 kcal/mol (1492.8949 without restraints) Performing minimization step: 2897. Total energy = 1494.2317 kcal/mol (1492.1394 without restraints) Performing minimization step: 2898. Total energy = 1493.4764 kcal/mol (1491.3845 without restraints) Performing minimization step: 2899. Total energy = 1492.7218 kcal/mol (1490.6302 without restraints) Performing minimization step: 2900. Total energy = 1491.9677 kcal/mol (1489.8765 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 1491.2142 kcal/mol (1489.1233 without restraints) Performing minimization step: 2902. Total energy = 1490.4612 kcal/mol (1488.3708 without restraints) Performing minimization step: 2903. Total energy = 1489.7089 kcal/mol (1487.6188 without restraints) Performing minimization step: 2904. Total energy = 1488.9571 kcal/mol (1486.8673 without restraints) Performing minimization step: 2905. Total energy = 1488.2059 kcal/mol (1486.1165 without restraints) Performing minimization step: 2906. Total energy = 1487.4553 kcal/mol (1485.3663 without restraints) Performing minimization step: 2907. Total energy = 1486.7053 kcal/mol (1484.6166 without restraints) Performing minimization step: 2908. Total energy = 1485.9558 kcal/mol (1483.8675 without restraints) Performing minimization step: 2909. Total energy = 1485.2070 kcal/mol (1483.1190 without restraints) Performing minimization step: 2910. Total energy = 1484.4587 kcal/mol (1482.3710 without restraints) Performing minimization step: 2911. Total energy = 1483.7110 kcal/mol (1481.6237 without restraints) Performing minimization step: 2912. Total energy = 1482.9638 kcal/mol (1480.8768 without restraints) Performing minimization step: 2913. Total energy = 1482.2174 kcal/mol (1480.1308 without restraints) Performing minimization step: 2914. Total energy = 1481.4714 kcal/mol (1479.3851 without restraints) Performing minimization step: 2915. Total energy = 1480.7260 kcal/mol (1478.6401 without restraints) Performing minimization step: 2916. Total energy = 1479.9811 kcal/mol (1477.8956 without restraints) Performing minimization step: 2917. Total energy = 1479.2368 kcal/mol (1477.1516 without restraints) Performing minimization step: 2918. Total energy = 1478.4931 kcal/mol (1476.4082 without restraints) Performing minimization step: 2919. Total energy = 1477.7500 kcal/mol (1475.6654 without restraints) Performing minimization step: 2920. Total energy = 1477.0074 kcal/mol (1474.9232 without restraints) Performing minimization step: 2921. Total energy = 1476.2654 kcal/mol (1474.1816 without restraints) Performing minimization step: 2922. Total energy = 1475.5240 kcal/mol (1473.4405 without restraints) Performing minimization step: 2923. Total energy = 1474.7834 kcal/mol (1472.7002 without restraints) Performing minimization step: 2924. Total energy = 1474.0431 kcal/mol (1471.9603 without restraints) Performing minimization step: 2925. Total energy = 1473.3034 kcal/mol (1471.2209 without restraints) Performing minimization step: 2926. Total energy = 1472.5642 kcal/mol (1470.4821 without restraints) Performing minimization step: 2927. Total energy = 1471.8256 kcal/mol (1469.7439 without restraints) Performing minimization step: 2928. Total energy = 1471.0876 kcal/mol (1469.0062 without restraints) Performing minimization step: 2929. Total energy = 1470.3502 kcal/mol (1468.2691 without restraints) Performing minimization step: 2930. Total energy = 1469.6133 kcal/mol (1467.5325 without restraints) Performing minimization step: 2931. Total energy = 1468.8770 kcal/mol (1466.7966 without restraints) Performing minimization step: 2932. Total energy = 1468.1413 kcal/mol (1466.0612 without restraints) Performing minimization step: 2933. Total energy = 1467.4061 kcal/mol (1465.3264 without restraints) Performing minimization step: 2934. Total energy = 1466.6715 kcal/mol (1464.5921 without restraints) Performing minimization step: 2935. Total energy = 1465.9375 kcal/mol (1463.8584 without restraints) Performing minimization step: 2936. Total energy = 1465.2040 kcal/mol (1463.1252 without restraints) Performing minimization step: 2937. Total energy = 1464.4710 kcal/mol (1462.3926 without restraints) Performing minimization step: 2938. Total energy = 1463.7387 kcal/mol (1461.6606 without restraints) Performing minimization step: 2939. Total energy = 1463.0069 kcal/mol (1460.9291 without restraints) Performing minimization step: 2940. Total energy = 1462.2756 kcal/mol (1460.1982 without restraints) Performing minimization step: 2941. Total energy = 1461.5450 kcal/mol (1459.4679 without restraints) Performing minimization step: 2942. Total energy = 1460.8149 kcal/mol (1458.7381 without restraints) Performing minimization step: 2943. Total energy = 1460.0854 kcal/mol (1458.0089 without restraints) Performing minimization step: 2944. Total energy = 1459.3562 kcal/mol (1457.2801 without restraints) Performing minimization step: 2945. Total energy = 1458.6277 kcal/mol (1456.5520 without restraints) Performing minimization step: 2946. Total energy = 1457.8999 kcal/mol (1455.8244 without restraints) Performing minimization step: 2947. Total energy = 1457.1726 kcal/mol (1455.0976 without restraints) Performing minimization step: 2948. Total energy = 1456.4460 kcal/mol (1454.3712 without restraints) Performing minimization step: 2949. Total energy = 1455.7198 kcal/mol (1453.6453 without restraints) Performing minimization step: 2950. Total energy = 1454.9941 kcal/mol (1452.9200 without restraints) Performing minimization step: 2951. Total energy = 1454.2690 kcal/mol (1452.1952 without restraints) Performing minimization step: 2952. Total energy = 1453.5445 kcal/mol (1451.4711 without restraints) Performing minimization step: 2953. Total energy = 1452.8206 kcal/mol (1450.7475 without restraints) Performing minimization step: 2954. Total energy = 1452.0972 kcal/mol (1450.0244 without restraints) Performing minimization step: 2955. Total energy = 1451.3743 kcal/mol (1449.3018 without restraints) Performing minimization step: 2956. Total energy = 1450.6521 kcal/mol (1448.5800 without restraints) Performing minimization step: 2957. Total energy = 1449.9304 kcal/mol (1447.8586 without restraints) Performing minimization step: 2958. Total energy = 1449.2092 kcal/mol (1447.1377 without restraints) Performing minimization step: 2959. Total energy = 1448.4886 kcal/mol (1446.4174 without restraints) Performing minimization step: 2960. Total energy = 1447.7685 kcal/mol (1445.6976 without restraints) Performing minimization step: 2961. Total energy = 1447.0491 kcal/mol (1444.9785 without restraints) Performing minimization step: 2962. Total energy = 1446.3303 kcal/mol (1444.2600 without restraints) Performing minimization step: 2963. Total energy = 1445.6118 kcal/mol (1443.5419 without restraints) Performing minimization step: 2964. Total energy = 1444.8939 kcal/mol (1442.8243 without restraints) Performing minimization step: 2965. Total energy = 1444.1766 kcal/mol (1442.1073 without restraints) Performing minimization step: 2966. Total energy = 1443.4600 kcal/mol (1441.3910 without restraints) Performing minimization step: 2967. Total energy = 1442.7437 kcal/mol (1440.6751 without restraints) Performing minimization step: 2968. Total energy = 1442.0280 kcal/mol (1439.9597 without restraints) Performing minimization step: 2969. Total energy = 1441.3129 kcal/mol (1439.2448 without restraints) Performing minimization step: 2970. Total energy = 1440.5982 kcal/mol (1438.5305 without restraints) Performing minimization step: 2971. Total energy = 1439.8842 kcal/mol (1437.8168 without restraints) Performing minimization step: 2972. Total energy = 1439.1707 kcal/mol (1437.1036 without restraints) Performing minimization step: 2973. Total energy = 1438.4577 kcal/mol (1436.3909 without restraints) Performing minimization step: 2974. Total energy = 1437.7453 kcal/mol (1435.6788 without restraints) Performing minimization step: 2975. Total energy = 1437.0334 kcal/mol (1434.9672 without restraints) Performing minimization step: 2976. Total energy = 1436.3220 kcal/mol (1434.2562 without restraints) Performing minimization step: 2977. Total energy = 1435.6113 kcal/mol (1433.5457 without restraints) Performing minimization step: 2978. Total energy = 1434.9010 kcal/mol (1432.8358 without restraints) Performing minimization step: 2979. Total energy = 1434.1913 kcal/mol (1432.1264 without restraints) Performing minimization step: 2980. Total energy = 1433.4822 kcal/mol (1431.4176 without restraints) Performing minimization step: 2981. Total energy = 1432.7735 kcal/mol (1430.7092 without restraints) Performing minimization step: 2982. Total energy = 1432.0655 kcal/mol (1430.0015 without restraints) Performing minimization step: 2983. Total energy = 1431.3581 kcal/mol (1429.2944 without restraints) Performing minimization step: 2984. Total energy = 1430.6511 kcal/mol (1428.5877 without restraints) Performing minimization step: 2985. Total energy = 1429.9447 kcal/mol (1427.8816 without restraints) Performing minimization step: 2986. Total energy = 1429.2389 kcal/mol (1427.1762 without restraints) Performing minimization step: 2987. Total energy = 1428.5336 kcal/mol (1426.4711 without restraints) Performing minimization step: 2988. Total energy = 1427.8288 kcal/mol (1425.7666 without restraints) Performing minimization step: 2989. Total energy = 1427.1243 kcal/mol (1425.0624 without restraints) Performing minimization step: 2990. Total energy = 1426.4207 kcal/mol (1424.3592 without restraints) Performing minimization step: 2991. Total energy = 1425.7175 kcal/mol (1423.6562 without restraints) Performing minimization step: 2992. Total energy = 1425.0148 kcal/mol (1422.9539 without restraints) Performing minimization step: 2993. Total energy = 1424.3127 kcal/mol (1422.2520 without restraints) Performing minimization step: 2994. Total energy = 1423.6111 kcal/mol (1421.5507 without restraints) Performing minimization step: 2995. Total energy = 1422.9100 kcal/mol (1420.8499 without restraints) Performing minimization step: 2996. Total energy = 1422.2094 kcal/mol (1420.1497 without restraints) Performing minimization step: 2997. Total energy = 1421.5094 kcal/mol (1419.4500 without restraints) Performing minimization step: 2998. Total energy = 1420.8099 kcal/mol (1418.7508 without restraints) Performing minimization step: 2999. Total energy = 1420.1110 kcal/mol (1418.0521 without restraints) Performing minimization step: 3000. Total energy = 1419.4126 kcal/mol (1417.3540 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 1418.7147 kcal/mol (1416.6564 without restraints) Performing minimization step: 3002. Total energy = 1418.0175 kcal/mol (1415.9596 without restraints) Performing minimization step: 3003. Total energy = 1417.3208 kcal/mol (1415.2633 without restraints) Performing minimization step: 3004. Total energy = 1416.6247 kcal/mol (1414.5673 without restraints) Performing minimization step: 3005. Total energy = 1415.9289 kcal/mol (1413.8718 without restraints) Performing minimization step: 3006. Total energy = 1415.2337 kcal/mol (1413.1769 without restraints) Performing minimization step: 3007. Total energy = 1414.5390 kcal/mol (1412.4825 without restraints) Performing minimization step: 3008. Total energy = 1413.8448 kcal/mol (1411.7886 without restraints) Performing minimization step: 3009. Total energy = 1413.1515 kcal/mol (1411.0956 without restraints) Performing minimization step: 3010. Total energy = 1412.4584 kcal/mol (1410.4028 without restraints) Performing minimization step: 3011. Total energy = 1411.7658 kcal/mol (1409.7105 without restraints) Performing minimization step: 3012. Total energy = 1411.0738 kcal/mol (1409.0187 without restraints) Performing minimization step: 3013. Total energy = 1410.3823 kcal/mol (1408.3275 without restraints) Performing minimization step: 3014. Total energy = 1409.6913 kcal/mol (1407.6368 without restraints) Performing minimization step: 3015. Total energy = 1409.0008 kcal/mol (1406.9466 without restraints) Performing minimization step: 3016. Total energy = 1408.3109 kcal/mol (1406.2570 without restraints) Performing minimization step: 3017. Total energy = 1407.6215 kcal/mol (1405.5679 without restraints) Performing minimization step: 3018. Total energy = 1406.9326 kcal/mol (1404.8793 without restraints) Performing minimization step: 3019. Total energy = 1406.2442 kcal/mol (1404.1912 without restraints) Performing minimization step: 3020. Total energy = 1405.5564 kcal/mol (1403.5036 without restraints) Performing minimization step: 3021. Total energy = 1404.8691 kcal/mol (1402.8166 without restraints) Performing minimization step: 3022. Total energy = 1404.1823 kcal/mol (1402.1301 without restraints) Performing minimization step: 3023. Total energy = 1403.4960 kcal/mol (1401.4441 without restraints) Performing minimization step: 3024. Total energy = 1402.8103 kcal/mol (1400.7587 without restraints) Performing minimization step: 3025. Total energy = 1402.1253 kcal/mol (1400.0740 without restraints) Performing minimization step: 3026. Total energy = 1401.4406 kcal/mol (1399.3896 without restraints) Performing minimization step: 3027. Total energy = 1400.7564 kcal/mol (1398.7057 without restraints) Performing minimization step: 3028. Total energy = 1400.0727 kcal/mol (1398.0223 without restraints) Performing minimization step: 3029. Total energy = 1399.3896 kcal/mol (1397.3394 without restraints) Performing minimization step: 3030. Total energy = 1398.7070 kcal/mol (1396.6571 without restraints) Performing minimization step: 3031. Total energy = 1398.0249 kcal/mol (1395.9753 without restraints) Performing minimization step: 3032. Total energy = 1397.3433 kcal/mol (1395.2940 without restraints) Performing minimization step: 3033. Total energy = 1396.6623 kcal/mol (1394.6132 without restraints) Performing minimization step: 3034. Total energy = 1395.9818 kcal/mol (1393.9330 without restraints) Performing minimization step: 3035. Total energy = 1395.3021 kcal/mol (1393.2536 without restraints) Performing minimization step: 3036. Total energy = 1394.6228 kcal/mol (1392.5746 without restraints) Performing minimization step: 3037. Total energy = 1393.9438 kcal/mol (1391.8958 without restraints) Performing minimization step: 3038. Total energy = 1393.2653 kcal/mol (1391.2176 without restraints) Performing minimization step: 3039. Total energy = 1392.5874 kcal/mol (1390.5400 without restraints) Performing minimization step: 3040. Total energy = 1391.9099 kcal/mol (1389.8628 without restraints) Performing minimization step: 3041. Total energy = 1391.2330 kcal/mol (1389.1862 without restraints) Performing minimization step: 3042. Total energy = 1390.5568 kcal/mol (1388.5102 without restraints) Performing minimization step: 3043. Total energy = 1389.8809 kcal/mol (1387.8346 without restraints) Performing minimization step: 3044. Total energy = 1389.2056 kcal/mol (1387.1595 without restraints) Performing minimization step: 3045. Total energy = 1388.5307 kcal/mol (1386.4850 without restraints) Performing minimization step: 3046. Total energy = 1387.8563 kcal/mol (1385.8108 without restraints) Performing minimization step: 3047. Total energy = 1387.1825 kcal/mol (1385.1373 without restraints) Performing minimization step: 3048. Total energy = 1386.5092 kcal/mol (1384.4642 without restraints) Performing minimization step: 3049. Total energy = 1385.8364 kcal/mol (1383.7917 without restraints) Performing minimization step: 3050. Total energy = 1385.1641 kcal/mol (1383.1197 without restraints) Performing minimization step: 3051. Total energy = 1384.4923 kcal/mol (1382.4481 without restraints) Performing minimization step: 3052. Total energy = 1383.8210 kcal/mol (1381.7771 without restraints) Performing minimization step: 3053. Total energy = 1383.1503 kcal/mol (1381.1067 without restraints) Performing minimization step: 3054. Total energy = 1382.4800 kcal/mol (1380.4367 without restraints) Performing minimization step: 3055. Total energy = 1381.8103 kcal/mol (1379.7672 without restraints) Performing minimization step: 3056. Total energy = 1381.1411 kcal/mol (1379.0982 without restraints) Performing minimization step: 3057. Total energy = 1380.4723 kcal/mol (1378.4298 without restraints) Performing minimization step: 3058. Total energy = 1379.8041 kcal/mol (1377.7619 without restraints) Performing minimization step: 3059. Total energy = 1379.1364 kcal/mol (1377.0944 without restraints) Performing minimization step: 3060. Total energy = 1378.4694 kcal/mol (1376.4277 without restraints) Performing minimization step: 3061. Total energy = 1377.8028 kcal/mol (1375.7613 without restraints) Performing minimization step: 3062. Total energy = 1377.1366 kcal/mol (1375.0954 without restraints) Performing minimization step: 3063. Total energy = 1376.4709 kcal/mol (1374.4300 without restraints) Performing minimization step: 3064. Total energy = 1375.8058 kcal/mol (1373.7651 without restraints) Performing minimization step: 3065. Total energy = 1375.1411 kcal/mol (1373.1007 without restraints) Performing minimization step: 3066. Total energy = 1374.4770 kcal/mol (1372.4368 without restraints) Performing minimization step: 3067. Total energy = 1373.8133 kcal/mol (1371.7734 without restraints) Performing minimization step: 3068. Total energy = 1373.1502 kcal/mol (1371.1105 without restraints) Performing minimization step: 3069. Total energy = 1372.4876 kcal/mol (1370.4482 without restraints) Performing minimization step: 3070. Total energy = 1371.8254 kcal/mol (1369.7863 without restraints) Performing minimization step: 3071. Total energy = 1371.1638 kcal/mol (1369.1249 without restraints) Performing minimization step: 3072. Total energy = 1370.5026 kcal/mol (1368.4640 without restraints) Performing minimization step: 3073. Total energy = 1369.8420 kcal/mol (1367.8037 without restraints) Performing minimization step: 3074. Total energy = 1369.1819 kcal/mol (1367.1438 without restraints) Performing minimization step: 3075. Total energy = 1368.5223 kcal/mol (1366.4844 without restraints) Performing minimization step: 3076. Total energy = 1367.8631 kcal/mol (1365.8255 without restraints) Performing minimization step: 3077. Total energy = 1367.2045 kcal/mol (1365.1672 without restraints) Performing minimization step: 3078. Total energy = 1366.5464 kcal/mol (1364.5093 without restraints) Performing minimization step: 3079. Total energy = 1365.8888 kcal/mol (1363.8519 without restraints) Performing minimization step: 3080. Total energy = 1365.2316 kcal/mol (1363.1950 without restraints) Performing minimization step: 3081. Total energy = 1364.5750 kcal/mol (1362.5387 without restraints) Performing minimization step: 3082. Total energy = 1363.9189 kcal/mol (1361.8828 without restraints) Performing minimization step: 3083. Total energy = 1363.2633 kcal/mol (1361.2274 without restraints) Performing minimization step: 3084. Total energy = 1362.6081 kcal/mol (1360.5725 without restraints) Performing minimization step: 3085. Total energy = 1361.9535 kcal/mol (1359.9182 without restraints) Performing minimization step: 3086. Total energy = 1361.2994 kcal/mol (1359.2643 without restraints) Performing minimization step: 3087. Total energy = 1360.6457 kcal/mol (1358.6109 without restraints) Performing minimization step: 3088. Total energy = 1359.9926 kcal/mol (1357.9580 without restraints) Performing minimization step: 3089. Total energy = 1359.3400 kcal/mol (1357.3056 without restraints) Performing minimization step: 3090. Total energy = 1358.6878 kcal/mol (1356.6537 without restraints) Performing minimization step: 3091. Total energy = 1358.0362 kcal/mol (1356.0023 without restraints) Performing minimization step: 3092. Total energy = 1357.3850 kcal/mol (1355.3514 without restraints) Performing minimization step: 3093. Total energy = 1356.7343 kcal/mol (1354.7010 without restraints) Performing minimization step: 3094. Total energy = 1356.0842 kcal/mol (1354.0511 without restraints) Performing minimization step: 3095. Total energy = 1355.4343 kcal/mol (1353.4014 without restraints) Performing minimization step: 3096. Total energy = 1354.7852 kcal/mol (1352.7525 without restraints) Performing minimization step: 3097. Total energy = 1354.1365 kcal/mol (1352.1041 without restraints) Performing minimization step: 3098. Total energy = 1353.4883 kcal/mol (1351.4562 without restraints) Performing minimization step: 3099. Total energy = 1352.8406 kcal/mol (1350.8087 without restraints) Performing minimization step: 3100. Total energy = 1352.1934 kcal/mol (1350.1618 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 1351.5466 kcal/mol (1349.5151 without restraints) Performing minimization step: 3102. Total energy = 1350.9003 kcal/mol (1348.8692 without restraints) Performing minimization step: 3103. Total energy = 1350.2546 kcal/mol (1348.2237 without restraints) Performing minimization step: 3104. Total energy = 1349.6094 kcal/mol (1347.5787 without restraints) Performing minimization step: 3105. Total energy = 1348.9646 kcal/mol (1346.9341 without restraints) Performing minimization step: 3106. Total energy = 1348.3203 kcal/mol (1346.2901 without restraints) Performing minimization step: 3107. Total energy = 1347.6765 kcal/mol (1345.6466 without restraints) Performing minimization step: 3108. Total energy = 1347.0332 kcal/mol (1345.0035 without restraints) Performing minimization step: 3109. Total energy = 1346.3905 kcal/mol (1344.3610 without restraints) Performing minimization step: 3110. Total energy = 1345.7482 kcal/mol (1343.7190 without restraints) Performing minimization step: 3111. Total energy = 1345.1064 kcal/mol (1343.0774 without restraints) Performing minimization step: 3112. Total energy = 1344.4651 kcal/mol (1342.4363 without restraints) Performing minimization step: 3113. Total energy = 1343.8242 kcal/mol (1341.7957 without restraints) Performing minimization step: 3114. Total energy = 1343.1838 kcal/mol (1341.1555 without restraints) Performing minimization step: 3115. Total energy = 1342.5440 kcal/mol (1340.5159 without restraints) Performing minimization step: 3116. Total energy = 1341.9046 kcal/mol (1339.8768 without restraints) Performing minimization step: 3117. Total energy = 1341.2657 kcal/mol (1339.2381 without restraints) Performing minimization step: 3118. Total energy = 1340.6273 kcal/mol (1338.5999 without restraints) Performing minimization step: 3119. Total energy = 1339.9894 kcal/mol (1337.9622 without restraints) Performing minimization step: 3120. Total energy = 1339.3519 kcal/mol (1337.3250 without restraints) Performing minimization step: 3121. Total energy = 1338.7149 kcal/mol (1336.6882 without restraints) Performing minimization step: 3122. Total energy = 1338.0784 kcal/mol (1336.0520 without restraints) Performing minimization step: 3123. Total energy = 1337.4424 kcal/mol (1335.4162 without restraints) Performing minimization step: 3124. Total energy = 1336.8068 kcal/mol (1334.7808 without restraints) Performing minimization step: 3125. Total energy = 1336.1718 kcal/mol (1334.1460 without restraints) Performing minimization step: 3126. Total energy = 1335.5373 kcal/mol (1333.5117 without restraints) Performing minimization step: 3127. Total energy = 1334.9031 kcal/mol (1332.8778 without restraints) Performing minimization step: 3128. Total energy = 1334.2695 kcal/mol (1332.2444 without restraints) Performing minimization step: 3129. Total energy = 1333.6364 kcal/mol (1331.6115 without restraints) Performing minimization step: 3130. Total energy = 1333.0039 kcal/mol (1330.9793 without restraints) Performing minimization step: 3131. Total energy = 1332.3718 kcal/mol (1330.3474 without restraints) Performing minimization step: 3132. Total energy = 1331.7401 kcal/mol (1329.7159 without restraints) Performing minimization step: 3133. Total energy = 1331.1089 kcal/mol (1329.0850 without restraints) Performing minimization step: 3134. Total energy = 1330.4782 kcal/mol (1328.4544 without restraints) Performing minimization step: 3135. Total energy = 1329.8479 kcal/mol (1327.8244 without restraints) Performing minimization step: 3136. Total energy = 1329.2182 kcal/mol (1327.1949 without restraints) Performing minimization step: 3137. Total energy = 1328.5889 kcal/mol (1326.5658 without restraints) Performing minimization step: 3138. Total energy = 1327.9601 kcal/mol (1325.9372 without restraints) Performing minimization step: 3139. Total energy = 1327.3317 kcal/mol (1325.3091 without restraints) Performing minimization step: 3140. Total energy = 1326.7042 kcal/mol (1324.6818 without restraints) Performing minimization step: 3141. Total energy = 1326.0768 kcal/mol (1324.0547 without restraints) Performing minimization step: 3142. Total energy = 1325.4499 kcal/mol (1323.4280 without restraints) Performing minimization step: 3143. Total energy = 1324.8237 kcal/mol (1322.8020 without restraints) Performing minimization step: 3144. Total energy = 1324.1977 kcal/mol (1322.1762 without restraints) Performing minimization step: 3145. Total energy = 1323.5723 kcal/mol (1321.5510 without restraints) Performing minimization step: 3146. Total energy = 1322.9473 kcal/mol (1320.9262 without restraints) Performing minimization step: 3147. Total energy = 1322.3227 kcal/mol (1320.3018 without restraints) Performing minimization step: 3148. Total energy = 1321.6986 kcal/mol (1319.6780 without restraints) Performing minimization step: 3149. Total energy = 1321.0750 kcal/mol (1319.0546 without restraints) Performing minimization step: 3150. Total energy = 1320.4519 kcal/mol (1318.4317 without restraints) Performing minimization step: 3151. Total energy = 1319.8293 kcal/mol (1317.8093 without restraints) Performing minimization step: 3152. Total energy = 1319.2074 kcal/mol (1317.1876 without restraints) Performing minimization step: 3153. Total energy = 1318.5857 kcal/mol (1316.5661 without restraints) Performing minimization step: 3154. Total energy = 1317.9644 kcal/mol (1315.9450 without restraints) Performing minimization step: 3155. Total energy = 1317.3436 kcal/mol (1315.3245 without restraints) Performing minimization step: 3156. Total energy = 1316.7233 kcal/mol (1314.7044 without restraints) Performing minimization step: 3157. Total energy = 1316.1035 kcal/mol (1314.0848 without restraints) Performing minimization step: 3158. Total energy = 1315.4841 kcal/mol (1313.4656 without restraints) Performing minimization step: 3159. Total energy = 1314.8652 kcal/mol (1312.8469 without restraints) Performing minimization step: 3160. Total energy = 1314.2468 kcal/mol (1312.2287 without restraints) Performing minimization step: 3161. Total energy = 1313.6289 kcal/mol (1311.6110 without restraints) Performing minimization step: 3162. Total energy = 1313.0114 kcal/mol (1310.9937 without restraints) Performing minimization step: 3163. Total energy = 1312.3943 kcal/mol (1310.3769 without restraints) Performing minimization step: 3164. Total energy = 1311.7778 kcal/mol (1309.7605 without restraints) Performing minimization step: 3165. Total energy = 1311.1617 kcal/mol (1309.1446 without restraints) Performing minimization step: 3166. Total energy = 1310.5461 kcal/mol (1308.5292 without restraints) Performing minimization step: 3167. Total energy = 1309.9309 kcal/mol (1307.9142 without restraints) Performing minimization step: 3168. Total energy = 1309.3162 kcal/mol (1307.2998 without restraints) Performing minimization step: 3169. Total energy = 1308.7020 kcal/mol (1306.6857 without restraints) Performing minimization step: 3170. Total energy = 1308.0882 kcal/mol (1306.0722 without restraints) Performing minimization step: 3171. Total energy = 1307.4749 kcal/mol (1305.4591 without restraints) Performing minimization step: 3172. Total energy = 1306.8621 kcal/mol (1304.8464 without restraints) Performing minimization step: 3173. Total energy = 1306.2497 kcal/mol (1304.2343 without restraints) Performing minimization step: 3174. Total energy = 1305.6378 kcal/mol (1303.6226 without restraints) Performing minimization step: 3175. Total energy = 1305.0263 kcal/mol (1303.0113 without restraints) Performing minimization step: 3176. Total energy = 1304.4153 kcal/mol (1302.4005 without restraints) Performing minimization step: 3177. Total energy = 1303.8048 kcal/mol (1301.7902 without restraints) Performing minimization step: 3178. Total energy = 1303.1948 kcal/mol (1301.1803 without restraints) Performing minimization step: 3179. Total energy = 1302.5852 kcal/mol (1300.5709 without restraints) Performing minimization step: 3180. Total energy = 1301.9761 kcal/mol (1299.9622 without restraints) Performing minimization step: 3181. Total energy = 1301.3675 kcal/mol (1299.3537 without restraints) Performing minimization step: 3182. Total energy = 1300.7595 kcal/mol (1298.7459 without restraints) Performing minimization step: 3183. Total energy = 1300.1517 kcal/mol (1298.1383 without restraints) Performing minimization step: 3184. Total energy = 1299.5444 kcal/mol (1297.5312 without restraints) Performing minimization step: 3185. Total energy = 1298.9376 kcal/mol (1296.9246 without restraints) Performing minimization step: 3186. Total energy = 1298.3312 kcal/mol (1296.3184 without restraints) Performing minimization step: 3187. Total energy = 1297.7253 kcal/mol (1295.7127 without restraints) Performing minimization step: 3188. Total energy = 1297.1200 kcal/mol (1295.1076 without restraints) Performing minimization step: 3189. Total energy = 1296.5150 kcal/mol (1294.5027 without restraints) Performing minimization step: 3190. Total energy = 1295.9104 kcal/mol (1293.8984 without restraints) Performing minimization step: 3191. Total energy = 1295.3063 kcal/mol (1293.2945 without restraints) Performing minimization step: 3192. Total energy = 1294.7027 kcal/mol (1292.6910 without restraints) Performing minimization step: 3193. Total energy = 1294.0993 kcal/mol (1292.0878 without restraints) Performing minimization step: 3194. Total energy = 1293.4965 kcal/mol (1291.4852 without restraints) Performing minimization step: 3195. Total energy = 1292.8943 kcal/mol (1290.8832 without restraints) Performing minimization step: 3196. Total energy = 1292.2924 kcal/mol (1290.2816 without restraints) Performing minimization step: 3197. Total energy = 1291.6911 kcal/mol (1289.6804 without restraints) Performing minimization step: 3198. Total energy = 1291.0902 kcal/mol (1289.0797 without restraints) Performing minimization step: 3199. Total energy = 1290.4897 kcal/mol (1288.4794 without restraints) Performing minimization step: 3200. Total energy = 1289.8893 kcal/mol (1287.8792 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 1289.2898 kcal/mol (1287.2799 without restraints) Performing minimization step: 3202. Total energy = 1288.6907 kcal/mol (1286.6809 without restraints) Performing minimization step: 3203. Total energy = 1288.0920 kcal/mol (1286.0825 without restraints) Performing minimization step: 3204. Total energy = 1287.4938 kcal/mol (1285.4845 without restraints) Performing minimization step: 3205. Total energy = 1286.8961 kcal/mol (1284.8869 without restraints) Performing minimization step: 3206. Total energy = 1286.2988 kcal/mol (1284.2898 without restraints) Performing minimization step: 3207. Total energy = 1285.7020 kcal/mol (1283.6932 without restraints) Performing minimization step: 3208. Total energy = 1285.1056 kcal/mol (1283.0970 without restraints) Performing minimization step: 3209. Total energy = 1284.5097 kcal/mol (1282.5013 without restraints) Performing minimization step: 3210. Total energy = 1283.9142 kcal/mol (1281.9059 without restraints) Performing minimization step: 3211. Total energy = 1283.3191 kcal/mol (1281.3111 without restraints) Performing minimization step: 3212. Total energy = 1282.7245 kcal/mol (1280.7167 without restraints) Performing minimization step: 3213. Total energy = 1282.1304 kcal/mol (1280.1227 without restraints) Performing minimization step: 3214. Total energy = 1281.5368 kcal/mol (1279.5293 without restraints) Performing minimization step: 3215. Total energy = 1280.9435 kcal/mol (1278.9362 without restraints) Performing minimization step: 3216. Total energy = 1280.3507 kcal/mol (1278.3436 without restraints) Performing minimization step: 3217. Total energy = 1279.7584 kcal/mol (1277.7514 without restraints) Performing minimization step: 3218. Total energy = 1279.1665 kcal/mol (1277.1597 without restraints) Performing minimization step: 3219. Total energy = 1278.5750 kcal/mol (1276.5684 without restraints) Performing minimization step: 3220. Total energy = 1277.9840 kcal/mol (1275.9776 without restraints) Performing minimization step: 3221. Total energy = 1277.3934 kcal/mol (1275.3872 without restraints) Performing minimization step: 3222. Total energy = 1276.8033 kcal/mol (1274.7973 without restraints) Performing minimization step: 3223. Total energy = 1276.2136 kcal/mol (1274.2078 without restraints) Performing minimization step: 3224. Total energy = 1275.6244 kcal/mol (1273.6187 without restraints) Performing minimization step: 3225. Total energy = 1275.0356 kcal/mol (1273.0301 without restraints) Performing minimization step: 3226. Total energy = 1274.4471 kcal/mol (1272.4418 without restraints) Performing minimization step: 3227. Total energy = 1273.8592 kcal/mol (1271.8541 without restraints) Performing minimization step: 3228. Total energy = 1273.2718 kcal/mol (1271.2668 without restraints) Performing minimization step: 3229. Total energy = 1272.6848 kcal/mol (1270.6800 without restraints) Performing minimization step: 3230. Total energy = 1272.0982 kcal/mol (1270.0936 without restraints) Performing minimization step: 3231. Total energy = 1271.5121 kcal/mol (1269.5076 without restraints) Performing minimization step: 3232. Total energy = 1270.9264 kcal/mol (1268.9221 without restraints) Performing minimization step: 3233. Total energy = 1270.3411 kcal/mol (1268.3370 without restraints) Performing minimization step: 3234. Total energy = 1269.7563 kcal/mol (1267.7524 without restraints) Performing minimization step: 3235. Total energy = 1269.1719 kcal/mol (1267.1682 without restraints) Performing minimization step: 3236. Total energy = 1268.5880 kcal/mol (1266.5844 without restraints) Performing minimization step: 3237. Total energy = 1268.0046 kcal/mol (1266.0013 without restraints) Performing minimization step: 3238. Total energy = 1267.4217 kcal/mol (1265.4185 without restraints) Performing minimization step: 3239. Total energy = 1266.8391 kcal/mol (1264.8360 without restraints) Performing minimization step: 3240. Total energy = 1266.2569 kcal/mol (1264.2540 without restraints) Performing minimization step: 3241. Total energy = 1265.6751 kcal/mol (1263.6724 without restraints) Performing minimization step: 3242. Total energy = 1265.0940 kcal/mol (1263.0915 without restraints) Performing minimization step: 3243. Total energy = 1264.5132 kcal/mol (1262.5108 without restraints) Performing minimization step: 3244. Total energy = 1263.9327 kcal/mol (1261.9305 without restraints) Performing minimization step: 3245. Total energy = 1263.3527 kcal/mol (1261.3507 without restraints) Performing minimization step: 3246. Total energy = 1262.7732 kcal/mol (1260.7713 without restraints) Performing minimization step: 3247. Total energy = 1262.1941 kcal/mol (1260.1924 without restraints) Performing minimization step: 3248. Total energy = 1261.6154 kcal/mol (1259.6139 without restraints) Performing minimization step: 3249. Total energy = 1261.0371 kcal/mol (1259.0358 without restraints) Performing minimization step: 3250. Total energy = 1260.4593 kcal/mol (1258.4581 without restraints) Performing minimization step: 3251. Total energy = 1259.8819 kcal/mol (1257.8809 without restraints) Performing minimization step: 3252. Total energy = 1259.3050 kcal/mol (1257.3041 without restraints) Performing minimization step: 3253. Total energy = 1258.7285 kcal/mol (1256.7278 without restraints) Performing minimization step: 3254. Total energy = 1258.1526 kcal/mol (1256.1521 without restraints) Performing minimization step: 3255. Total energy = 1257.5770 kcal/mol (1255.5767 without restraints) Performing minimization step: 3256. Total energy = 1257.0018 kcal/mol (1255.0016 without restraints) Performing minimization step: 3257. Total energy = 1256.4270 kcal/mol (1254.4270 without restraints) Performing minimization step: 3258. Total energy = 1255.8527 kcal/mol (1253.8528 without restraints) Performing minimization step: 3259. Total energy = 1255.2789 kcal/mol (1253.2793 without restraints) Performing minimization step: 3260. Total energy = 1254.7055 kcal/mol (1252.7059 without restraints) Performing minimization step: 3261. Total energy = 1254.1324 kcal/mol (1252.1331 without restraints) Performing minimization step: 3262. Total energy = 1253.5598 kcal/mol (1251.5606 without restraints) Performing minimization step: 3263. Total energy = 1252.9876 kcal/mol (1250.9886 without restraints) Performing minimization step: 3264. Total energy = 1252.4159 kcal/mol (1250.4170 without restraints) Performing minimization step: 3265. Total energy = 1251.8445 kcal/mol (1249.8458 without restraints) Performing minimization step: 3266. Total energy = 1251.2738 kcal/mol (1249.2752 without restraints) Performing minimization step: 3267. Total energy = 1250.7033 kcal/mol (1248.7049 without restraints) Performing minimization step: 3268. Total energy = 1250.1333 kcal/mol (1248.1350 without restraints) Performing minimization step: 3269. Total energy = 1249.5638 kcal/mol (1247.5659 without restraints) Performing minimization step: 3270. Total energy = 1248.9948 kcal/mol (1246.9969 without restraints) Performing minimization step: 3271. Total energy = 1248.4262 kcal/mol (1246.4284 without restraints) Performing minimization step: 3272. Total energy = 1247.8579 kcal/mol (1245.8602 without restraints) Performing minimization step: 3273. Total energy = 1247.2900 kcal/mol (1245.2925 without restraints) Performing minimization step: 3274. Total energy = 1246.7225 kcal/mol (1244.7252 without restraints) Performing minimization step: 3275. Total energy = 1246.1554 kcal/mol (1244.1583 without restraints) Performing minimization step: 3276. Total energy = 1245.5888 kcal/mol (1243.5918 without restraints) Performing minimization step: 3277. Total energy = 1245.0226 kcal/mol (1243.0257 without restraints) Performing minimization step: 3278. Total energy = 1244.4568 kcal/mol (1242.4601 without restraints) Performing minimization step: 3279. Total energy = 1243.8915 kcal/mol (1241.8949 without restraints) Performing minimization step: 3280. Total energy = 1243.3265 kcal/mol (1241.3301 without restraints) Performing minimization step: 3281. Total energy = 1242.7620 kcal/mol (1240.7658 without restraints) Performing minimization step: 3282. Total energy = 1242.1979 kcal/mol (1240.2019 without restraints) Performing minimization step: 3283. Total energy = 1241.6343 kcal/mol (1239.6383 without restraints) Performing minimization step: 3284. Total energy = 1241.0710 kcal/mol (1239.0752 without restraints) Performing minimization step: 3285. Total energy = 1240.5082 kcal/mol (1238.5126 without restraints) Performing minimization step: 3286. Total energy = 1239.9458 kcal/mol (1237.9503 without restraints) Performing minimization step: 3287. Total energy = 1239.3840 kcal/mol (1237.3887 without restraints) Performing minimization step: 3288. Total energy = 1238.8226 kcal/mol (1236.8275 without restraints) Performing minimization step: 3289. Total energy = 1238.2618 kcal/mol (1236.2668 without restraints) Performing minimization step: 3290. Total energy = 1237.7011 kcal/mol (1235.7062 without restraints) Performing minimization step: 3291. Total energy = 1237.1408 kcal/mol (1235.1461 without restraints) Performing minimization step: 3292. Total energy = 1236.5809 kcal/mol (1234.5863 without restraints) Performing minimization step: 3293. Total energy = 1236.0217 kcal/mol (1234.0272 without restraints) Performing minimization step: 3294. Total energy = 1235.4626 kcal/mol (1233.4683 without restraints) Performing minimization step: 3295. Total energy = 1234.9040 kcal/mol (1232.9099 without restraints) Performing minimization step: 3296. Total energy = 1234.3458 kcal/mol (1232.3518 without restraints) Performing minimization step: 3297. Total energy = 1233.7880 kcal/mol (1231.7942 without restraints) Performing minimization step: 3298. Total energy = 1233.2306 kcal/mol (1231.2369 without restraints) Performing minimization step: 3299. Total energy = 1232.6737 kcal/mol (1230.6802 without restraints) Performing minimization step: 3300. Total energy = 1232.1172 kcal/mol (1230.1238 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 1231.5611 kcal/mol (1229.5678 without restraints) Performing minimization step: 3302. Total energy = 1231.0054 kcal/mol (1229.0122 without restraints) Performing minimization step: 3303. Total energy = 1230.4501 kcal/mol (1228.4571 without restraints) Performing minimization step: 3304. Total energy = 1229.8952 kcal/mol (1227.9024 without restraints) Performing minimization step: 3305. Total energy = 1229.3409 kcal/mol (1227.3482 without restraints) Performing minimization step: 3306. Total energy = 1228.7869 kcal/mol (1226.7943 without restraints) Performing minimization step: 3307. Total energy = 1228.2332 kcal/mol (1226.2407 without restraints) Performing minimization step: 3308. Total energy = 1227.6799 kcal/mol (1225.6876 without restraints) Performing minimization step: 3309. Total energy = 1227.1273 kcal/mol (1225.1352 without restraints) Performing minimization step: 3310. Total energy = 1226.5749 kcal/mol (1224.5829 without restraints) Performing minimization step: 3311. Total energy = 1226.0230 kcal/mol (1224.0311 without restraints) Performing minimization step: 3312. Total energy = 1225.4714 kcal/mol (1223.4797 without restraints) Performing minimization step: 3313. Total energy = 1224.9201 kcal/mol (1222.9285 without restraints) Performing minimization step: 3314. Total energy = 1224.3693 kcal/mol (1222.3779 without restraints) Performing minimization step: 3315. Total energy = 1223.8190 kcal/mol (1221.8277 without restraints) Performing minimization step: 3316. Total energy = 1223.2690 kcal/mol (1221.2779 without restraints) Performing minimization step: 3317. Total energy = 1222.7195 kcal/mol (1220.7285 without restraints) Performing minimization step: 3318. Total energy = 1222.1704 kcal/mol (1220.1796 without restraints) Performing minimization step: 3319. Total energy = 1221.6218 kcal/mol (1219.6310 without restraints) Performing minimization step: 3320. Total energy = 1221.0735 kcal/mol (1219.0829 without restraints) Performing minimization step: 3321. Total energy = 1220.5256 kcal/mol (1218.5351 without restraints) Performing minimization step: 3322. Total energy = 1219.9782 kcal/mol (1217.9879 without restraints) Performing minimization step: 3323. Total energy = 1219.4312 kcal/mol (1217.4410 without restraints) Performing minimization step: 3324. Total energy = 1218.8846 kcal/mol (1216.8945 without restraints) Performing minimization step: 3325. Total energy = 1218.3383 kcal/mol (1216.3484 without restraints) Performing minimization step: 3326. Total energy = 1217.7925 kcal/mol (1215.8027 without restraints) Performing minimization step: 3327. Total energy = 1217.2471 kcal/mol (1215.2574 without restraints) Performing minimization step: 3328. Total energy = 1216.7021 kcal/mol (1214.7125 without restraints) Performing minimization step: 3329. Total energy = 1216.1578 kcal/mol (1214.1684 without restraints) Performing minimization step: 3330. Total energy = 1215.6136 kcal/mol (1213.6244 without restraints) Performing minimization step: 3331. Total energy = 1215.0698 kcal/mol (1213.0807 without restraints) Performing minimization step: 3332. Total energy = 1214.5265 kcal/mol (1212.5375 without restraints) Performing minimization step: 3333. Total energy = 1213.9835 kcal/mol (1211.9946 without restraints) Performing minimization step: 3334. Total energy = 1213.4409 kcal/mol (1211.4522 without restraints) Performing minimization step: 3335. Total energy = 1212.8987 kcal/mol (1210.9101 without restraints) Performing minimization step: 3336. Total energy = 1212.3570 kcal/mol (1210.3685 without restraints) Performing minimization step: 3337. Total energy = 1211.8156 kcal/mol (1209.8272 without restraints) Performing minimization step: 3338. Total energy = 1211.2746 kcal/mol (1209.2864 without restraints) Performing minimization step: 3339. Total energy = 1210.7341 kcal/mol (1208.7460 without restraints) Performing minimization step: 3340. Total energy = 1210.1939 kcal/mol (1208.2059 without restraints) Performing minimization step: 3341. Total energy = 1209.6542 kcal/mol (1207.6663 without restraints) Performing minimization step: 3342. Total energy = 1209.1148 kcal/mol (1207.1271 without restraints) Performing minimization step: 3343. Total energy = 1208.5760 kcal/mol (1206.5885 without restraints) Performing minimization step: 3344. Total energy = 1208.0375 kcal/mol (1206.0500 without restraints) Performing minimization step: 3345. Total energy = 1207.4994 kcal/mol (1205.5121 without restraints) Performing minimization step: 3346. Total energy = 1206.9616 kcal/mol (1204.9744 without restraints) Performing minimization step: 3347. Total energy = 1206.4243 kcal/mol (1204.4372 without restraints) Performing minimization step: 3348. Total energy = 1205.8873 kcal/mol (1203.9004 without restraints) Performing minimization step: 3349. Total energy = 1205.3508 kcal/mol (1203.3639 without restraints) Performing minimization step: 3350. Total energy = 1204.8146 kcal/mol (1202.8280 without restraints) Performing minimization step: 3351. Total energy = 1204.2789 kcal/mol (1202.2923 without restraints) Performing minimization step: 3352. Total energy = 1203.7439 kcal/mol (1201.7575 without restraints) Performing minimization step: 3353. Total energy = 1203.2090 kcal/mol (1201.2227 without restraints) Performing minimization step: 3354. Total energy = 1202.6747 kcal/mol (1200.6884 without restraints) Performing minimization step: 3355. Total energy = 1202.1405 kcal/mol (1200.1544 without restraints) Performing minimization step: 3356. Total energy = 1201.6067 kcal/mol (1199.6208 without restraints) Performing minimization step: 3357. Total energy = 1201.0734 kcal/mol (1199.0875 without restraints) Performing minimization step: 3358. Total energy = 1200.5404 kcal/mol (1198.5547 without restraints) Performing minimization step: 3359. Total energy = 1200.0078 kcal/mol (1198.0222 without restraints) Performing minimization step: 3360. Total energy = 1199.4757 kcal/mol (1197.4902 without restraints) Performing minimization step: 3361. Total energy = 1198.9439 kcal/mol (1196.9586 without restraints) Performing minimization step: 3362. Total energy = 1198.4125 kcal/mol (1196.4273 without restraints) Performing minimization step: 3363. Total energy = 1197.8815 kcal/mol (1195.8964 without restraints) Performing minimization step: 3364. Total energy = 1197.3511 kcal/mol (1195.3661 without restraints) Performing minimization step: 3365. Total energy = 1196.8209 kcal/mol (1194.8361 without restraints) Performing minimization step: 3366. Total energy = 1196.2911 kcal/mol (1194.3064 without restraints) Performing minimization step: 3367. Total energy = 1195.7617 kcal/mol (1193.7771 without restraints) Performing minimization step: 3368. Total energy = 1195.2327 kcal/mol (1193.2482 without restraints) Performing minimization step: 3369. Total energy = 1194.7041 kcal/mol (1192.7196 without restraints) Performing minimization step: 3370. Total energy = 1194.1758 kcal/mol (1192.1915 without restraints) Performing minimization step: 3371. Total energy = 1193.6479 kcal/mol (1191.6638 without restraints) Performing minimization step: 3372. Total energy = 1193.1205 kcal/mol (1191.1364 without restraints) Performing minimization step: 3373. Total energy = 1192.5934 kcal/mol (1190.6095 without restraints) Performing minimization step: 3374. Total energy = 1192.0667 kcal/mol (1190.0829 without restraints) Performing minimization step: 3375. Total energy = 1191.5404 kcal/mol (1189.5567 without restraints) Performing minimization step: 3376. Total energy = 1191.0145 kcal/mol (1189.0309 without restraints) Performing minimization step: 3377. Total energy = 1190.4893 kcal/mol (1188.5058 without restraints) Performing minimization step: 3378. Total energy = 1189.9642 kcal/mol (1187.9808 without restraints) Performing minimization step: 3379. Total energy = 1189.4394 kcal/mol (1187.4562 without restraints) Performing minimization step: 3380. Total energy = 1188.9151 kcal/mol (1186.9319 without restraints) Performing minimization step: 3381. Total energy = 1188.3911 kcal/mol (1186.4081 without restraints) Performing minimization step: 3382. Total energy = 1187.8676 kcal/mol (1185.8846 without restraints) Performing minimization step: 3383. Total energy = 1187.3444 kcal/mol (1185.3616 without restraints) Performing minimization step: 3384. Total energy = 1186.8216 kcal/mol (1184.8389 without restraints) Performing minimization step: 3385. Total energy = 1186.2992 kcal/mol (1184.3166 without restraints) Performing minimization step: 3386. Total energy = 1185.7770 kcal/mol (1183.7945 without restraints) Performing minimization step: 3387. Total energy = 1185.2555 kcal/mol (1183.2732 without restraints) Performing minimization step: 3388. Total energy = 1184.7343 kcal/mol (1182.7520 without restraints) Performing minimization step: 3389. Total energy = 1184.2134 kcal/mol (1182.2313 without restraints) Performing minimization step: 3390. Total energy = 1183.6929 kcal/mol (1181.7109 without restraints) Performing minimization step: 3391. Total energy = 1183.1728 kcal/mol (1181.1909 without restraints) Performing minimization step: 3392. Total energy = 1182.6531 kcal/mol (1180.6713 without restraints) Performing minimization step: 3393. Total energy = 1182.1338 kcal/mol (1180.1521 without restraints) Performing minimization step: 3394. Total energy = 1181.6148 kcal/mol (1179.6332 without restraints) Performing minimization step: 3395. Total energy = 1181.0963 kcal/mol (1179.1148 without restraints) Performing minimization step: 3396. Total energy = 1180.5781 kcal/mol (1178.5967 without restraints) Performing minimization step: 3397. Total energy = 1180.0603 kcal/mol (1178.0790 without restraints) Performing minimization step: 3398. Total energy = 1179.5429 kcal/mol (1177.5617 without restraints) Performing minimization step: 3399. Total energy = 1179.0262 kcal/mol (1177.0452 without restraints) Performing minimization step: 3400. Total energy = 1178.5096 kcal/mol (1176.5286 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 1177.9933 kcal/mol (1176.0125 without restraints) Performing minimization step: 3402. Total energy = 1177.4777 kcal/mol (1175.4969 without restraints) Performing minimization step: 3403. Total energy = 1176.9622 kcal/mol (1174.9816 without restraints) Performing minimization step: 3404. Total energy = 1176.4471 kcal/mol (1174.4665 without restraints) Performing minimization step: 3405. Total energy = 1175.9323 kcal/mol (1173.9519 without restraints) Performing minimization step: 3406. Total energy = 1175.4180 kcal/mol (1173.4376 without restraints) Performing minimization step: 3407. Total energy = 1174.9040 kcal/mol (1172.9238 without restraints) Performing minimization step: 3408. Total energy = 1174.3904 kcal/mol (1172.4102 without restraints) Performing minimization step: 3409. Total energy = 1173.8774 kcal/mol (1171.8974 without restraints) Performing minimization step: 3410. Total energy = 1173.3645 kcal/mol (1171.3846 without restraints) Performing minimization step: 3411. Total energy = 1172.8521 kcal/mol (1170.8723 without restraints) Performing minimization step: 3412. Total energy = 1172.3400 kcal/mol (1170.3603 without restraints) Performing minimization step: 3413. Total energy = 1171.8283 kcal/mol (1169.8486 without restraints) Performing minimization step: 3414. Total energy = 1171.3169 kcal/mol (1169.3374 without restraints) Performing minimization step: 3415. Total energy = 1170.8060 kcal/mol (1168.8265 without restraints) Performing minimization step: 3416. Total energy = 1170.2954 kcal/mol (1168.3161 without restraints) Performing minimization step: 3417. Total energy = 1169.7852 kcal/mol (1167.8059 without restraints) Performing minimization step: 3418. Total energy = 1169.2755 kcal/mol (1167.2964 without restraints) Performing minimization step: 3419. Total energy = 1168.7661 kcal/mol (1166.7871 without restraints) Performing minimization step: 3420. Total energy = 1168.2570 kcal/mol (1166.2781 without restraints) Performing minimization step: 3421. Total energy = 1167.7483 kcal/mol (1165.7695 without restraints) Performing minimization step: 3422. Total energy = 1167.2400 kcal/mol (1165.2613 without restraints) Performing minimization step: 3423. Total energy = 1166.7321 kcal/mol (1164.7534 without restraints) Performing minimization step: 3424. Total energy = 1166.2243 kcal/mol (1164.2457 without restraints) Performing minimization step: 3425. Total energy = 1165.7170 kcal/mol (1163.7386 without restraints) Performing minimization step: 3426. Total energy = 1165.2102 kcal/mol (1163.2319 without restraints) Performing minimization step: 3427. Total energy = 1164.7037 kcal/mol (1162.7255 without restraints) Performing minimization step: 3428. Total energy = 1164.1977 kcal/mol (1162.2195 without restraints) Performing minimization step: 3429. Total energy = 1163.6922 kcal/mol (1161.7141 without restraints) Performing minimization step: 3430. Total energy = 1163.1868 kcal/mol (1161.2089 without restraints) Performing minimization step: 3431. Total energy = 1162.6818 kcal/mol (1160.7040 without restraints) Performing minimization step: 3432. Total energy = 1162.1772 kcal/mol (1160.1995 without restraints) Performing minimization step: 3433. Total energy = 1161.6732 kcal/mol (1159.6955 without restraints) Performing minimization step: 3434. Total energy = 1161.1693 kcal/mol (1159.1918 without restraints) Performing minimization step: 3435. Total energy = 1160.6658 kcal/mol (1158.6884 without restraints) Performing minimization step: 3436. Total energy = 1160.1627 kcal/mol (1158.1853 without restraints) Performing minimization step: 3437. Total energy = 1159.6599 kcal/mol (1157.6827 without restraints) Performing minimization step: 3438. Total energy = 1159.1575 kcal/mol (1157.1804 without restraints) Performing minimization step: 3439. Total energy = 1158.6555 kcal/mol (1156.6784 without restraints) Performing minimization step: 3440. Total energy = 1158.1539 kcal/mol (1156.1769 without restraints) Performing minimization step: 3441. Total energy = 1157.6529 kcal/mol (1155.6759 without restraints) Performing minimization step: 3442. Total energy = 1157.1519 kcal/mol (1155.1751 without restraints) Performing minimization step: 3443. Total energy = 1156.6516 kcal/mol (1154.6748 without restraints) Performing minimization step: 3444. Total energy = 1156.1514 kcal/mol (1154.1747 without restraints) Performing minimization step: 3445. Total energy = 1155.6515 kcal/mol (1153.6750 without restraints) Performing minimization step: 3446. Total energy = 1155.1521 kcal/mol (1153.1756 without restraints) Performing minimization step: 3447. Total energy = 1154.6530 kcal/mol (1152.6766 without restraints) Performing minimization step: 3448. Total energy = 1154.1543 kcal/mol (1152.1780 without restraints) Performing minimization step: 3449. Total energy = 1153.6559 kcal/mol (1151.6797 without restraints) Performing minimization step: 3450. Total energy = 1153.1579 kcal/mol (1151.1818 without restraints) Performing minimization step: 3451. Total energy = 1152.6603 kcal/mol (1150.6843 without restraints) Performing minimization step: 3452. Total energy = 1152.1631 kcal/mol (1150.1873 without restraints) Performing minimization step: 3453. Total energy = 1151.6664 kcal/mol (1149.6905 without restraints) Performing minimization step: 3454. Total energy = 1151.1698 kcal/mol (1149.1941 without restraints) Performing minimization step: 3455. Total energy = 1150.6736 kcal/mol (1148.6980 without restraints) Performing minimization step: 3456. Total energy = 1150.1778 kcal/mol (1148.2022 without restraints) Performing minimization step: 3457. Total energy = 1149.6824 kcal/mol (1147.7069 without restraints) Performing minimization step: 3458. Total energy = 1149.1873 kcal/mol (1147.2119 without restraints) Performing minimization step: 3459. Total energy = 1148.6926 kcal/mol (1146.7173 without restraints) Performing minimization step: 3460. Total energy = 1148.1982 kcal/mol (1146.2230 without restraints) Performing minimization step: 3461. Total energy = 1147.7042 kcal/mol (1145.7291 without restraints) Performing minimization step: 3462. Total energy = 1147.2108 kcal/mol (1145.2357 without restraints) Performing minimization step: 3463. Total energy = 1146.7175 kcal/mol (1144.7425 without restraints) Performing minimization step: 3464. Total energy = 1146.2246 kcal/mol (1144.2497 without restraints) Performing minimization step: 3465. Total energy = 1145.7322 kcal/mol (1143.7574 without restraints) Performing minimization step: 3466. Total energy = 1145.2400 kcal/mol (1143.2653 without restraints) Performing minimization step: 3467. Total energy = 1144.7482 kcal/mol (1142.7735 without restraints) Performing minimization step: 3468. Total energy = 1144.2568 kcal/mol (1142.2824 without restraints) Performing minimization step: 3469. Total energy = 1143.7658 kcal/mol (1141.7913 without restraints) Performing minimization step: 3470. Total energy = 1143.2752 kcal/mol (1141.3009 without restraints) Performing minimization step: 3471. Total energy = 1142.7848 kcal/mol (1140.8105 without restraints) Performing minimization step: 3472. Total energy = 1142.2950 kcal/mol (1140.3207 without restraints) Performing minimization step: 3473. Total energy = 1141.8053 kcal/mol (1139.8311 without restraints) Performing minimization step: 3474. Total energy = 1141.3159 kcal/mol (1139.3419 without restraints) Performing minimization step: 3475. Total energy = 1140.8269 kcal/mol (1138.8530 without restraints) Performing minimization step: 3476. Total energy = 1140.3383 kcal/mol (1138.3645 without restraints) Performing minimization step: 3477. Total energy = 1139.8500 kcal/mol (1137.8762 without restraints) Performing minimization step: 3478. Total energy = 1139.3621 kcal/mol (1137.3884 without restraints) Performing minimization step: 3479. Total energy = 1138.8745 kcal/mol (1136.9009 without restraints) Performing minimization step: 3480. Total energy = 1138.3873 kcal/mol (1136.4138 without restraints) Performing minimization step: 3481. Total energy = 1137.9005 kcal/mol (1135.9270 without restraints) Performing minimization step: 3482. Total energy = 1137.4140 kcal/mol (1135.4406 without restraints) Performing minimization step: 3483. Total energy = 1136.9278 kcal/mol (1134.9545 without restraints) Performing minimization step: 3484. Total energy = 1136.4425 kcal/mol (1134.4693 without restraints) Performing minimization step: 3485. Total energy = 1135.9571 kcal/mol (1133.9839 without restraints) Performing minimization step: 3486. Total energy = 1135.4720 kcal/mol (1133.4989 without restraints) Performing minimization step: 3487. Total energy = 1134.9873 kcal/mol (1133.0143 without restraints) Performing minimization step: 3488. Total energy = 1134.5029 kcal/mol (1132.5300 without restraints) Performing minimization step: 3489. Total energy = 1134.0189 kcal/mol (1132.0460 without restraints) Performing minimization step: 3490. Total energy = 1133.5354 kcal/mol (1131.5626 without restraints) Performing minimization step: 3491. Total energy = 1133.0521 kcal/mol (1131.0794 without restraints) Performing minimization step: 3492. Total energy = 1132.5691 kcal/mol (1130.5965 without restraints) Performing minimization step: 3493. Total energy = 1132.0868 kcal/mol (1130.1144 without restraints) Performing minimization step: 3494. Total energy = 1131.6046 kcal/mol (1129.6322 without restraints) Performing minimization step: 3495. Total energy = 1131.1227 kcal/mol (1129.1503 without restraints) Performing minimization step: 3496. Total energy = 1130.6411 kcal/mol (1128.6688 without restraints) Performing minimization step: 3497. Total energy = 1130.1600 kcal/mol (1128.1879 without restraints) Performing minimization step: 3498. Total energy = 1129.6793 kcal/mol (1127.7071 without restraints) Performing minimization step: 3499. Total energy = 1129.1987 kcal/mol (1127.2267 without restraints) Performing minimization step: 3500. Total energy = 1128.7186 kcal/mol (1126.7465 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 1128.2387 kcal/mol (1126.2668 without restraints) Performing minimization step: 3502. Total energy = 1127.7592 kcal/mol (1125.7874 without restraints) Performing minimization step: 3503. Total energy = 1127.2801 kcal/mol (1125.3083 without restraints) Performing minimization step: 3504. Total energy = 1126.8014 kcal/mol (1124.8298 without restraints) Performing minimization step: 3505. Total energy = 1126.3231 kcal/mol (1124.3514 without restraints) Performing minimization step: 3506. Total energy = 1125.8450 kcal/mol (1123.8734 without restraints) Performing minimization step: 3507. Total energy = 1125.3672 kcal/mol (1123.3957 without restraints) Performing minimization step: 3508. Total energy = 1124.8898 kcal/mol (1122.9184 without restraints) Performing minimization step: 3509. Total energy = 1124.4128 kcal/mol (1122.4414 without restraints) Performing minimization step: 3510. Total energy = 1123.9360 kcal/mol (1121.9648 without restraints) Performing minimization step: 3511. Total energy = 1123.4597 kcal/mol (1121.4885 without restraints) Performing minimization step: 3512. Total energy = 1122.9841 kcal/mol (1121.0130 without restraints) Performing minimization step: 3513. Total energy = 1122.5084 kcal/mol (1120.5374 without restraints) Performing minimization step: 3514. Total energy = 1122.0331 kcal/mol (1120.0621 without restraints) Performing minimization step: 3515. Total energy = 1121.5581 kcal/mol (1119.5872 without restraints) Performing minimization step: 3516. Total energy = 1121.0835 kcal/mol (1119.1126 without restraints) Performing minimization step: 3517. Total energy = 1120.6092 kcal/mol (1118.6384 without restraints) Performing minimization step: 3518. Total energy = 1120.1351 kcal/mol (1118.1643 without restraints) Performing minimization step: 3519. Total energy = 1119.6614 kcal/mol (1117.6908 without restraints) Performing minimization step: 3520. Total energy = 1119.1881 kcal/mol (1117.2176 without restraints) Performing minimization step: 3521. Total energy = 1118.7152 kcal/mol (1116.7447 without restraints) Performing minimization step: 3522. Total energy = 1118.2426 kcal/mol (1116.2722 without restraints) Performing minimization step: 3523. Total energy = 1117.7703 kcal/mol (1115.8000 without restraints) Performing minimization step: 3524. Total energy = 1117.2984 kcal/mol (1115.3281 without restraints) Performing minimization step: 3525. Total energy = 1116.8268 kcal/mol (1114.8566 without restraints) Performing minimization step: 3526. Total energy = 1116.3556 kcal/mol (1114.3855 without restraints) Performing minimization step: 3527. Total energy = 1115.8847 kcal/mol (1113.9146 without restraints) Performing minimization step: 3528. Total energy = 1115.4142 kcal/mol (1113.4442 without restraints) Performing minimization step: 3529. Total energy = 1114.9440 kcal/mol (1112.9740 without restraints) Performing minimization step: 3530. Total energy = 1114.4741 kcal/mol (1112.5042 without restraints) Performing minimization step: 3531. Total energy = 1114.0045 kcal/mol (1112.0347 without restraints) Performing minimization step: 3532. Total energy = 1113.5354 kcal/mol (1111.5656 without restraints) Performing minimization step: 3533. Total energy = 1113.0665 kcal/mol (1111.0969 without restraints) Performing minimization step: 3534. Total energy = 1112.5980 kcal/mol (1110.6284 without restraints) Performing minimization step: 3535. Total energy = 1112.1298 kcal/mol (1110.1603 without restraints) Performing minimization step: 3536. Total energy = 1111.6622 kcal/mol (1109.6927 without restraints) Performing minimization step: 3537. Total energy = 1111.1947 kcal/mol (1109.2253 without restraints) Performing minimization step: 3538. Total energy = 1110.7275 kcal/mol (1108.7582 without restraints) Performing minimization step: 3539. Total energy = 1110.2609 kcal/mol (1108.2916 without restraints) Performing minimization step: 3540. Total energy = 1109.7946 kcal/mol (1107.8254 without restraints) Performing minimization step: 3541. Total energy = 1109.3285 kcal/mol (1107.3593 without restraints) Performing minimization step: 3542. Total energy = 1108.8626 kcal/mol (1106.8935 without restraints) Performing minimization step: 3543. Total energy = 1108.3971 kcal/mol (1106.4281 without restraints) Performing minimization step: 3544. Total energy = 1107.9320 kcal/mol (1105.9630 without restraints) Performing minimization step: 3545. Total energy = 1107.4671 kcal/mol (1105.4983 without restraints) Performing minimization step: 3546. Total energy = 1107.0026 kcal/mol (1105.0338 without restraints) Performing minimization step: 3547. Total energy = 1106.5385 kcal/mol (1104.5697 without restraints) Performing minimization step: 3548. Total energy = 1106.0747 kcal/mol (1104.1060 without restraints) Performing minimization step: 3549. Total energy = 1105.6112 kcal/mol (1103.6425 without restraints) Performing minimization step: 3550. Total energy = 1105.1480 kcal/mol (1103.1794 without restraints) Performing minimization step: 3551. Total energy = 1104.6856 kcal/mol (1102.7171 without restraints) Performing minimization step: 3552. Total energy = 1104.2232 kcal/mol (1102.2547 without restraints) Performing minimization step: 3553. Total energy = 1103.7610 kcal/mol (1101.7926 without restraints) Performing minimization step: 3554. Total energy = 1103.2994 kcal/mol (1101.3311 without restraints) Performing minimization step: 3555. Total energy = 1102.8379 kcal/mol (1100.8696 without restraints) Performing minimization step: 3556. Total energy = 1102.3767 kcal/mol (1100.4086 without restraints) Performing minimization step: 3557. Total energy = 1101.9159 kcal/mol (1099.9478 without restraints) Performing minimization step: 3558. Total energy = 1101.4554 kcal/mol (1099.4873 without restraints) Performing minimization step: 3559. Total energy = 1100.9952 kcal/mol (1099.0272 without restraints) Performing minimization step: 3560. Total energy = 1100.5354 kcal/mol (1098.5674 without restraints) Performing minimization step: 3561. Total energy = 1100.0760 kcal/mol (1098.1082 without restraints) Performing minimization step: 3562. Total energy = 1099.6169 kcal/mol (1097.6490 without restraints) Performing minimization step: 3563. Total energy = 1099.1580 kcal/mol (1097.1902 without restraints) Performing minimization step: 3564. Total energy = 1098.6997 kcal/mol (1096.7320 without restraints) Performing minimization step: 3565. Total energy = 1098.2415 kcal/mol (1096.2738 without restraints) Performing minimization step: 3566. Total energy = 1097.7836 kcal/mol (1095.8160 without restraints) Performing minimization step: 3567. Total energy = 1097.3261 kcal/mol (1095.3587 without restraints) Performing minimization step: 3568. Total energy = 1096.8692 kcal/mol (1094.9018 without restraints) Performing minimization step: 3569. Total energy = 1096.4126 kcal/mol (1094.4452 without restraints) Performing minimization step: 3570. Total energy = 1095.9560 kcal/mol (1093.9887 without restraints) Performing minimization step: 3571. Total energy = 1095.4998 kcal/mol (1093.5325 without restraints) Performing minimization step: 3572. Total energy = 1095.0439 kcal/mol (1093.0766 without restraints) Performing minimization step: 3573. Total energy = 1094.5885 kcal/mol (1092.6213 without restraints) Performing minimization step: 3574. Total energy = 1094.1332 kcal/mol (1092.1661 without restraints) Performing minimization step: 3575. Total energy = 1093.6783 kcal/mol (1091.7112 without restraints) Performing minimization step: 3576. Total energy = 1093.2237 kcal/mol (1091.2567 without restraints) Performing minimization step: 3577. Total energy = 1092.7694 kcal/mol (1090.8025 without restraints) Performing minimization step: 3578. Total energy = 1092.3154 kcal/mol (1090.3485 without restraints) Performing minimization step: 3579. Total energy = 1091.8618 kcal/mol (1089.8950 without restraints) Performing minimization step: 3580. Total energy = 1091.4085 kcal/mol (1089.4417 without restraints) Performing minimization step: 3581. Total energy = 1090.9555 kcal/mol (1088.9887 without restraints) Performing minimization step: 3582. Total energy = 1090.5028 kcal/mol (1088.5361 without restraints) Performing minimization step: 3583. Total energy = 1090.0504 kcal/mol (1088.0838 without restraints) Performing minimization step: 3584. Total energy = 1089.5984 kcal/mol (1087.6319 without restraints) Performing minimization step: 3585. Total energy = 1089.1467 kcal/mol (1087.1802 without restraints) Performing minimization step: 3586. Total energy = 1088.6955 kcal/mol (1086.7290 without restraints) Performing minimization step: 3587. Total energy = 1088.2444 kcal/mol (1086.2780 without restraints) Performing minimization step: 3588. Total energy = 1087.7937 kcal/mol (1085.8273 without restraints) Performing minimization step: 3589. Total energy = 1087.3432 kcal/mol (1085.3770 without restraints) Performing minimization step: 3590. Total energy = 1086.8931 kcal/mol (1084.9269 without restraints) Performing minimization step: 3591. Total energy = 1086.4434 kcal/mol (1084.4772 without restraints) Performing minimization step: 3592. Total energy = 1085.9939 kcal/mol (1084.0278 without restraints) Performing minimization step: 3593. Total energy = 1085.5448 kcal/mol (1083.5787 without restraints) Performing minimization step: 3594. Total energy = 1085.0959 kcal/mol (1083.1299 without restraints) Performing minimization step: 3595. Total energy = 1084.6474 kcal/mol (1082.6815 without restraints) Performing minimization step: 3596. Total energy = 1084.1993 kcal/mol (1082.2334 without restraints) Performing minimization step: 3597. Total energy = 1083.7514 kcal/mol (1081.7856 without restraints) Performing minimization step: 3598. Total energy = 1083.3038 kcal/mol (1081.3380 without restraints) Performing minimization step: 3599. Total energy = 1082.8566 kcal/mol (1080.8908 without restraints) Performing minimization step: 3600. Total energy = 1082.4097 kcal/mol (1080.4440 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 1081.9631 kcal/mol (1079.9974 without restraints) Performing minimization step: 3602. Total energy = 1081.5168 kcal/mol (1079.5512 without restraints) Performing minimization step: 3603. Total energy = 1081.0708 kcal/mol (1079.1053 without restraints) Performing minimization step: 3604. Total energy = 1080.6252 kcal/mol (1078.6597 without restraints) Performing minimization step: 3605. Total energy = 1080.1799 kcal/mol (1078.2145 without restraints) Performing minimization step: 3606. Total energy = 1079.7349 kcal/mol (1077.7695 without restraints) Performing minimization step: 3607. Total energy = 1079.2902 kcal/mol (1077.3249 without restraints) Performing minimization step: 3608. Total energy = 1078.8458 kcal/mol (1076.8806 without restraints) Performing minimization step: 3609. Total energy = 1078.4018 kcal/mol (1076.4365 without restraints) Performing minimization step: 3610. Total energy = 1077.9582 kcal/mol (1075.9931 without restraints) Performing minimization step: 3611. Total energy = 1077.5150 kcal/mol (1075.5499 without restraints) Performing minimization step: 3612. Total energy = 1077.0719 kcal/mol (1075.1069 without restraints) Performing minimization step: 3613. Total energy = 1076.6291 kcal/mol (1074.6641 without restraints) Performing minimization step: 3614. Total energy = 1076.1866 kcal/mol (1074.2217 without restraints) Performing minimization step: 3615. Total energy = 1075.7445 kcal/mol (1073.7797 without restraints) Performing minimization step: 3616. Total energy = 1075.3027 kcal/mol (1073.3379 without restraints) Performing minimization step: 3617. Total energy = 1074.8612 kcal/mol (1072.8964 without restraints) Performing minimization step: 3618. Total energy = 1074.4199 kcal/mol (1072.4552 without restraints) Performing minimization step: 3619. Total energy = 1073.9790 kcal/mol (1072.0143 without restraints) Performing minimization step: 3620. Total energy = 1073.5384 kcal/mol (1071.5737 without restraints) Performing minimization step: 3621. Total energy = 1073.0981 kcal/mol (1071.1335 without restraints) Performing minimization step: 3622. Total energy = 1072.6581 kcal/mol (1070.6935 without restraints) Performing minimization step: 3623. Total energy = 1072.2184 kcal/mol (1070.2539 without restraints) Performing minimization step: 3624. Total energy = 1071.7790 kcal/mol (1069.8146 without restraints) Performing minimization step: 3625. Total energy = 1071.3400 kcal/mol (1069.3756 without restraints) Performing minimization step: 3626. Total energy = 1070.9012 kcal/mol (1068.9369 without restraints) Performing minimization step: 3627. Total energy = 1070.4628 kcal/mol (1068.4985 without restraints) Performing minimization step: 3628. Total energy = 1070.0247 kcal/mol (1068.0604 without restraints) Performing minimization step: 3629. Total energy = 1069.5868 kcal/mol (1067.6226 without restraints) Performing minimization step: 3630. Total energy = 1069.1495 kcal/mol (1067.1854 without restraints) Performing minimization step: 3631. Total energy = 1068.7123 kcal/mol (1066.7482 without restraints) Performing minimization step: 3632. Total energy = 1068.2754 kcal/mol (1066.3113 without restraints) Performing minimization step: 3633. Total energy = 1067.8388 kcal/mol (1065.8748 without restraints) Performing minimization step: 3634. Total energy = 1067.4025 kcal/mol (1065.4386 without restraints) Performing minimization step: 3635. Total energy = 1066.9666 kcal/mol (1065.0026 without restraints) Performing minimization step: 3636. Total energy = 1066.5309 kcal/mol (1064.5670 without restraints) Performing minimization step: 3637. Total energy = 1066.0955 kcal/mol (1064.1317 without restraints) Performing minimization step: 3638. Total energy = 1065.6607 kcal/mol (1063.6969 without restraints) Performing minimization step: 3639. Total energy = 1065.2259 kcal/mol (1063.2622 without restraints) Performing minimization step: 3640. Total energy = 1064.7917 kcal/mol (1062.8282 without restraints) Performing minimization step: 3641. Total energy = 1064.3578 kcal/mol (1062.3941 without restraints) Performing minimization step: 3642. Total energy = 1063.9242 kcal/mol (1061.9606 without restraints) Performing minimization step: 3643. Total energy = 1063.4909 kcal/mol (1061.5273 without restraints) Performing minimization step: 3644. Total energy = 1063.0576 kcal/mol (1061.0941 without restraints) Performing minimization step: 3645. Total energy = 1062.6247 kcal/mol (1060.6613 without restraints) Performing minimization step: 3646. Total energy = 1062.1921 kcal/mol (1060.2287 without restraints) Performing minimization step: 3647. Total energy = 1061.7598 kcal/mol (1059.7964 without restraints) Performing minimization step: 3648. Total energy = 1061.3277 kcal/mol (1059.3643 without restraints) Performing minimization step: 3649. Total energy = 1060.8959 kcal/mol (1058.9327 without restraints) Performing minimization step: 3650. Total energy = 1060.4645 kcal/mol (1058.5013 without restraints) Performing minimization step: 3651. Total energy = 1060.0336 kcal/mol (1058.0704 without restraints) Performing minimization step: 3652. Total energy = 1059.6028 kcal/mol (1057.6397 without restraints) Performing minimization step: 3653. Total energy = 1059.1724 kcal/mol (1057.2093 without restraints) Performing minimization step: 3654. Total energy = 1058.7421 kcal/mol (1056.7791 without restraints) Performing minimization step: 3655. Total energy = 1058.3123 kcal/mol (1056.3492 without restraints) Performing minimization step: 3656. Total energy = 1057.8827 kcal/mol (1055.9197 without restraints) Performing minimization step: 3657. Total energy = 1057.4534 kcal/mol (1055.4905 without restraints) Performing minimization step: 3658. Total energy = 1057.0244 kcal/mol (1055.0615 without restraints) Performing minimization step: 3659. Total energy = 1056.5954 kcal/mol (1054.6326 without restraints) Performing minimization step: 3660. Total energy = 1056.1670 kcal/mol (1054.2042 without restraints) Performing minimization step: 3661. Total energy = 1055.7389 kcal/mol (1053.7762 without restraints) Performing minimization step: 3662. Total energy = 1055.3112 kcal/mol (1053.3485 without restraints) Performing minimization step: 3663. Total energy = 1054.8837 kcal/mol (1052.9210 without restraints) Performing minimization step: 3664. Total energy = 1054.4565 kcal/mol (1052.4939 without restraints) Performing minimization step: 3665. Total energy = 1054.0296 kcal/mol (1052.0671 without restraints) Performing minimization step: 3666. Total energy = 1053.6031 kcal/mol (1051.6405 without restraints) Performing minimization step: 3667. Total energy = 1053.1771 kcal/mol (1051.2147 without restraints) Performing minimization step: 3668. Total energy = 1052.7512 kcal/mol (1050.7888 without restraints) Performing minimization step: 3669. Total energy = 1052.3259 kcal/mol (1050.3635 without restraints) Performing minimization step: 3670. Total energy = 1051.9005 kcal/mol (1049.9382 without restraints) Performing minimization step: 3671. Total energy = 1051.4755 kcal/mol (1049.5132 without restraints) Performing minimization step: 3672. Total energy = 1051.0509 kcal/mol (1049.0887 without restraints) Performing minimization step: 3673. Total energy = 1050.6264 kcal/mol (1048.6642 without restraints) Performing minimization step: 3674. Total energy = 1050.2022 kcal/mol (1048.2401 without restraints) Performing minimization step: 3675. Total energy = 1049.7783 kcal/mol (1047.8162 without restraints) Performing minimization step: 3676. Total energy = 1049.3547 kcal/mol (1047.3926 without restraints) Performing minimization step: 3677. Total energy = 1048.9314 kcal/mol (1046.9694 without restraints) Performing minimization step: 3678. Total energy = 1048.5084 kcal/mol (1046.5464 without restraints) Performing minimization step: 3679. Total energy = 1048.0857 kcal/mol (1046.1237 without restraints) Performing minimization step: 3680. Total energy = 1047.6632 kcal/mol (1045.7013 without restraints) Performing minimization step: 3681. Total energy = 1047.2411 kcal/mol (1045.2792 without restraints) Performing minimization step: 3682. Total energy = 1046.8193 kcal/mol (1044.8574 without restraints) Performing minimization step: 3683. Total energy = 1046.3978 kcal/mol (1044.4359 without restraints) Performing minimization step: 3684. Total energy = 1045.9765 kcal/mol (1044.0147 without restraints) Performing minimization step: 3685. Total energy = 1045.5559 kcal/mol (1043.5942 without restraints) Performing minimization step: 3686. Total energy = 1045.1353 kcal/mol (1043.1736 without restraints) Performing minimization step: 3687. Total energy = 1044.7151 kcal/mol (1042.7535 without restraints) Performing minimization step: 3688. Total energy = 1044.2951 kcal/mol (1042.3335 without restraints) Performing minimization step: 3689. Total energy = 1043.8757 kcal/mol (1041.9141 without restraints) Performing minimization step: 3690. Total energy = 1043.4563 kcal/mol (1041.4949 without restraints) Performing minimization step: 3691. Total energy = 1043.0372 kcal/mol (1041.0757 without restraints) Performing minimization step: 3692. Total energy = 1042.6183 kcal/mol (1040.6569 without restraints) Performing minimization step: 3693. Total energy = 1042.1999 kcal/mol (1040.2385 without restraints) Performing minimization step: 3694. Total energy = 1041.7816 kcal/mol (1039.8202 without restraints) Performing minimization step: 3695. Total energy = 1041.3636 kcal/mol (1039.4022 without restraints) Performing minimization step: 3696. Total energy = 1040.9456 kcal/mol (1038.9843 without restraints) Performing minimization step: 3697. Total energy = 1040.5282 kcal/mol (1038.5669 without restraints) Performing minimization step: 3698. Total energy = 1040.1110 kcal/mol (1038.1498 without restraints) Performing minimization step: 3699. Total energy = 1039.6941 kcal/mol (1037.7330 without restraints) Performing minimization step: 3700. Total energy = 1039.2778 kcal/mol (1037.3166 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 1038.8616 kcal/mol (1036.9006 without restraints) Performing minimization step: 3702. Total energy = 1038.4457 kcal/mol (1036.4846 without restraints) Performing minimization step: 3703. Total energy = 1038.0300 kcal/mol (1036.0690 without restraints) Performing minimization step: 3704. Total energy = 1037.6146 kcal/mol (1035.6536 without restraints) Performing minimization step: 3705. Total energy = 1037.1995 kcal/mol (1035.2385 without restraints) Performing minimization step: 3706. Total energy = 1036.7846 kcal/mol (1034.8237 without restraints) Performing minimization step: 3707. Total energy = 1036.3701 kcal/mol (1034.4092 without restraints) Performing minimization step: 3708. Total energy = 1035.9558 kcal/mol (1033.9950 without restraints) Performing minimization step: 3709. Total energy = 1035.5418 kcal/mol (1033.5811 without restraints) Performing minimization step: 3710. Total energy = 1035.1282 kcal/mol (1033.1675 without restraints) Performing minimization step: 3711. Total energy = 1034.7148 kcal/mol (1032.7541 without restraints) Performing minimization step: 3712. Total energy = 1034.3017 kcal/mol (1032.3410 without restraints) Performing minimization step: 3713. Total energy = 1033.8888 kcal/mol (1031.9282 without restraints) Performing minimization step: 3714. Total energy = 1033.4763 kcal/mol (1031.5157 without restraints) Performing minimization step: 3715. Total energy = 1033.0641 kcal/mol (1031.1037 without restraints) Performing minimization step: 3716. Total energy = 1032.6523 kcal/mol (1030.6918 without restraints) Performing minimization step: 3717. Total energy = 1032.2406 kcal/mol (1030.2802 without restraints) Performing minimization step: 3718. Total energy = 1031.8293 kcal/mol (1029.8690 without restraints) Performing minimization step: 3719. Total energy = 1031.4183 kcal/mol (1029.4580 without restraints) Performing minimization step: 3720. Total energy = 1031.0075 kcal/mol (1029.0472 without restraints) Performing minimization step: 3721. Total energy = 1030.5969 kcal/mol (1028.6367 without restraints) Performing minimization step: 3722. Total energy = 1030.1867 kcal/mol (1028.2264 without restraints) Performing minimization step: 3723. Total energy = 1029.7767 kcal/mol (1027.8165 without restraints) Performing minimization step: 3724. Total energy = 1029.3670 kcal/mol (1027.4068 without restraints) Performing minimization step: 3725. Total energy = 1028.9578 kcal/mol (1026.9977 without restraints) Performing minimization step: 3726. Total energy = 1028.5487 kcal/mol (1026.5886 without restraints) Performing minimization step: 3727. Total energy = 1028.1398 kcal/mol (1026.1798 without restraints) Performing minimization step: 3728. Total energy = 1027.7313 kcal/mol (1025.7712 without restraints) Performing minimization step: 3729. Total energy = 1027.3230 kcal/mol (1025.3630 without restraints) Performing minimization step: 3730. Total energy = 1026.9150 kcal/mol (1024.9550 without restraints) Performing minimization step: 3731. Total energy = 1026.5073 kcal/mol (1024.5474 without restraints) Performing minimization step: 3732. Total energy = 1026.0998 kcal/mol (1024.1400 without restraints) Performing minimization step: 3733. Total energy = 1025.6927 kcal/mol (1023.7328 without restraints) Performing minimization step: 3734. Total energy = 1025.2860 kcal/mol (1023.3263 without restraints) Performing minimization step: 3735. Total energy = 1024.8795 kcal/mol (1022.9198 without restraints) Performing minimization step: 3736. Total energy = 1024.4733 kcal/mol (1022.5137 without restraints) Performing minimization step: 3737. Total energy = 1024.0674 kcal/mol (1022.1077 without restraints) Performing minimization step: 3738. Total energy = 1023.6616 kcal/mol (1021.7020 without restraints) Performing minimization step: 3739. Total energy = 1023.2562 kcal/mol (1021.2965 without restraints) Performing minimization step: 3740. Total energy = 1022.8510 kcal/mol (1020.8914 without restraints) Performing minimization step: 3741. Total energy = 1022.4462 kcal/mol (1020.4867 without restraints) Performing minimization step: 3742. Total energy = 1022.0416 kcal/mol (1020.0821 without restraints) Performing minimization step: 3743. Total energy = 1021.6372 kcal/mol (1019.6778 without restraints) Performing minimization step: 3744. Total energy = 1021.2332 kcal/mol (1019.2737 without restraints) Performing minimization step: 3745. Total energy = 1020.8294 kcal/mol (1018.8700 without restraints) Performing minimization step: 3746. Total energy = 1020.4259 kcal/mol (1018.4665 without restraints) Performing minimization step: 3747. Total energy = 1020.0227 kcal/mol (1018.0634 without restraints) Performing minimization step: 3748. Total energy = 1019.6199 kcal/mol (1017.6606 without restraints) Performing minimization step: 3749. Total energy = 1019.2172 kcal/mol (1017.2580 without restraints) Performing minimization step: 3750. Total energy = 1018.8150 kcal/mol (1016.8558 without restraints) Performing minimization step: 3751. Total energy = 1018.4130 kcal/mol (1016.4539 without restraints) Performing minimization step: 3752. Total energy = 1018.0114 kcal/mol (1016.0522 without restraints) Performing minimization step: 3753. Total energy = 1017.6099 kcal/mol (1015.6508 without restraints) Performing minimization step: 3754. Total energy = 1017.2086 kcal/mol (1015.2496 without restraints) Performing minimization step: 3755. Total energy = 1016.8076 kcal/mol (1014.8486 without restraints) Performing minimization step: 3756. Total energy = 1016.4069 kcal/mol (1014.4479 without restraints) Performing minimization step: 3757. Total energy = 1016.0064 kcal/mol (1014.0474 without restraints) Performing minimization step: 3758. Total energy = 1015.6064 kcal/mol (1013.6475 without restraints) Performing minimization step: 3759. Total energy = 1015.2065 kcal/mol (1013.2476 without restraints) Performing minimization step: 3760. Total energy = 1014.8070 kcal/mol (1012.8483 without restraints) Performing minimization step: 3761. Total energy = 1014.4077 kcal/mol (1012.4489 without restraints) Performing minimization step: 3762. Total energy = 1014.0088 kcal/mol (1012.0501 without restraints) Performing minimization step: 3763. Total energy = 1013.6104 kcal/mol (1011.6517 without restraints) Performing minimization step: 3764. Total energy = 1013.2119 kcal/mol (1011.2532 without restraints) Performing minimization step: 3765. Total energy = 1012.8136 kcal/mol (1010.8549 without restraints) Performing minimization step: 3766. Total energy = 1012.4156 kcal/mol (1010.4570 without restraints) Performing minimization step: 3767. Total energy = 1012.0178 kcal/mol (1010.0593 without restraints) Performing minimization step: 3768. Total energy = 1011.6204 kcal/mol (1009.6618 without restraints) Performing minimization step: 3769. Total energy = 1011.2232 kcal/mol (1009.2647 without restraints) Performing minimization step: 3770. Total energy = 1010.8263 kcal/mol (1008.8678 without restraints) Performing minimization step: 3771. Total energy = 1010.4298 kcal/mol (1008.4714 without restraints) Performing minimization step: 3772. Total energy = 1010.0336 kcal/mol (1008.0753 without restraints) Performing minimization step: 3773. Total energy = 1009.6376 kcal/mol (1007.6792 without restraints) Performing minimization step: 3774. Total energy = 1009.2418 kcal/mol (1007.2835 without restraints) Performing minimization step: 3775. Total energy = 1008.8465 kcal/mol (1006.8882 without restraints) Performing minimization step: 3776. Total energy = 1008.4514 kcal/mol (1006.4934 without restraints) Performing minimization step: 3777. Total energy = 1008.0566 kcal/mol (1006.0984 without restraints) Performing minimization step: 3778. Total energy = 1007.6619 kcal/mol (1005.7037 without restraints) Performing minimization step: 3779. Total energy = 1007.2674 kcal/mol (1005.3093 without restraints) Performing minimization step: 3780. Total energy = 1006.8732 kcal/mol (1004.9151 without restraints) Performing minimization step: 3781. Total energy = 1006.4793 kcal/mol (1004.5213 without restraints) Performing minimization step: 3782. Total energy = 1006.0857 kcal/mol (1004.1276 without restraints) Performing minimization step: 3783. Total energy = 1005.6923 kcal/mol (1003.7343 without restraints) Performing minimization step: 3784. Total energy = 1005.2991 kcal/mol (1003.3412 without restraints) Performing minimization step: 3785. Total energy = 1004.9062 kcal/mol (1002.9483 without restraints) Performing minimization step: 3786. Total energy = 1004.5136 kcal/mol (1002.5557 without restraints) Performing minimization step: 3787. Total energy = 1004.1216 kcal/mol (1002.1637 without restraints) Performing minimization step: 3788. Total energy = 1003.7295 kcal/mol (1001.7717 without restraints) Performing minimization step: 3789. Total energy = 1003.3377 kcal/mol (1001.3799 without restraints) Performing minimization step: 3790. Total energy = 1002.9462 kcal/mol (1000.9884 without restraints) Performing minimization step: 3791. Total energy = 1002.5549 kcal/mol (1000.5972 without restraints) Performing minimization step: 3792. Total energy = 1002.1640 kcal/mol (1000.2063 without restraints) Performing minimization step: 3793. Total energy = 1001.7734 kcal/mol (999.8158 without restraints) Performing minimization step: 3794. Total energy = 1001.3830 kcal/mol (999.4254 without restraints) Performing minimization step: 3795. Total energy = 1000.9928 kcal/mol (999.0352 without restraints) Performing minimization step: 3796. Total energy = 1000.6029 kcal/mol (998.6454 without restraints) Performing minimization step: 3797. Total energy = 1000.2134 kcal/mol (998.2559 without restraints) Performing minimization step: 3798. Total energy = 999.8240 kcal/mol (997.8665 without restraints) Performing minimization step: 3799. Total energy = 999.4349 kcal/mol (997.4775 without restraints) Performing minimization step: 3800. Total energy = 999.0460 kcal/mol (997.0886 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 998.6575 kcal/mol (996.7001 without restraints) Performing minimization step: 3802. Total energy = 998.2691 kcal/mol (996.3118 without restraints) Performing minimization step: 3803. Total energy = 997.8811 kcal/mol (995.9238 without restraints) Performing minimization step: 3804. Total energy = 997.4933 kcal/mol (995.5360 without restraints) Performing minimization step: 3805. Total energy = 997.1057 kcal/mol (995.1485 without restraints) Performing minimization step: 3806. Total energy = 996.7185 kcal/mol (994.7613 without restraints) Performing minimization step: 3807. Total energy = 996.3314 kcal/mol (994.3743 without restraints) Performing minimization step: 3808. Total energy = 995.9447 kcal/mol (993.9876 without restraints) Performing minimization step: 3809. Total energy = 995.5582 kcal/mol (993.6011 without restraints) Performing minimization step: 3810. Total energy = 995.1720 kcal/mol (993.2150 without restraints) Performing minimization step: 3811. Total energy = 994.7860 kcal/mol (992.8290 without restraints) Performing minimization step: 3812. Total energy = 994.4005 kcal/mol (992.4436 without restraints) Performing minimization step: 3813. Total energy = 994.0151 kcal/mol (992.0582 without restraints) Performing minimization step: 3814. Total energy = 993.6301 kcal/mol (991.6732 without restraints) Performing minimization step: 3815. Total energy = 993.2452 kcal/mol (991.2884 without restraints) Performing minimization step: 3816. Total energy = 992.8608 kcal/mol (990.9040 without restraints) Performing minimization step: 3817. Total energy = 992.4764 kcal/mol (990.5196 without restraints) Performing minimization step: 3818. Total energy = 992.0923 kcal/mol (990.1355 without restraints) Performing minimization step: 3819. Total energy = 991.7084 kcal/mol (989.7517 without restraints) Performing minimization step: 3820. Total energy = 991.3248 kcal/mol (989.3681 without restraints) Performing minimization step: 3821. Total energy = 990.9415 kcal/mol (988.9848 without restraints) Performing minimization step: 3822. Total energy = 990.5584 kcal/mol (988.6018 without restraints) Performing minimization step: 3823. Total energy = 990.1758 kcal/mol (988.2192 without restraints) Performing minimization step: 3824. Total energy = 989.7932 kcal/mol (987.8367 without restraints) Performing minimization step: 3825. Total energy = 989.4109 kcal/mol (987.4544 without restraints) Performing minimization step: 3826. Total energy = 989.0289 kcal/mol (987.0724 without restraints) Performing minimization step: 3827. Total energy = 988.6471 kcal/mol (986.6907 without restraints) Performing minimization step: 3828. Total energy = 988.2656 kcal/mol (986.3092 without restraints) Performing minimization step: 3829. Total energy = 987.8843 kcal/mol (985.9279 without restraints) Performing minimization step: 3830. Total energy = 987.5033 kcal/mol (985.5470 without restraints) Performing minimization step: 3831. Total energy = 987.1226 kcal/mol (985.1663 without restraints) Performing minimization step: 3832. Total energy = 986.7421 kcal/mol (984.7858 without restraints) Performing minimization step: 3833. Total energy = 986.3618 kcal/mol (984.4056 without restraints) Performing minimization step: 3834. Total energy = 985.9819 kcal/mol (984.0257 without restraints) Performing minimization step: 3835. Total energy = 985.6021 kcal/mol (983.6460 without restraints) Performing minimization step: 3836. Total energy = 985.2227 kcal/mol (983.2666 without restraints) Performing minimization step: 3837. Total energy = 984.8435 kcal/mol (982.8876 without restraints) Performing minimization step: 3838. Total energy = 984.4647 kcal/mol (982.5087 without restraints) Performing minimization step: 3839. Total energy = 984.0859 kcal/mol (982.1300 without restraints) Performing minimization step: 3840. Total energy = 983.7075 kcal/mol (981.7515 without restraints) Performing minimization step: 3841. Total energy = 983.3296 kcal/mol (981.3737 without restraints) Performing minimization step: 3842. Total energy = 982.9518 kcal/mol (980.9960 without restraints) Performing minimization step: 3843. Total energy = 982.5742 kcal/mol (980.6183 without restraints) Performing minimization step: 3844. Total energy = 982.1968 kcal/mol (980.2410 without restraints) Performing minimization step: 3845. Total energy = 981.8199 kcal/mol (979.8641 without restraints) Performing minimization step: 3846. Total energy = 981.4430 kcal/mol (979.4872 without restraints) Performing minimization step: 3847. Total energy = 981.0664 kcal/mol (979.1107 without restraints) Performing minimization step: 3848. Total energy = 980.6900 kcal/mol (978.7343 without restraints) Performing minimization step: 3849. Total energy = 980.3139 kcal/mol (978.3583 without restraints) Performing minimization step: 3850. Total energy = 979.9382 kcal/mol (977.9826 without restraints) Performing minimization step: 3851. Total energy = 979.5626 kcal/mol (977.6070 without restraints) Performing minimization step: 3852. Total energy = 979.1872 kcal/mol (977.2317 without restraints) Performing minimization step: 3853. Total energy = 978.8120 kcal/mol (976.8566 without restraints) Performing minimization step: 3854. Total energy = 978.4374 kcal/mol (976.4820 without restraints) Performing minimization step: 3855. Total energy = 978.0624 kcal/mol (976.1070 without restraints) Performing minimization step: 3856. Total energy = 977.6880 kcal/mol (975.7327 without restraints) Performing minimization step: 3857. Total energy = 977.3139 kcal/mol (975.3586 without restraints) Performing minimization step: 3858. Total energy = 976.9400 kcal/mol (974.9847 without restraints) Performing minimization step: 3859. Total energy = 976.5664 kcal/mol (974.6112 without restraints) Performing minimization step: 3860. Total energy = 976.1930 kcal/mol (974.2378 without restraints) Performing minimization step: 3861. Total energy = 975.8199 kcal/mol (973.8648 without restraints) Performing minimization step: 3862. Total energy = 975.4471 kcal/mol (973.4919 without restraints) Performing minimization step: 3863. Total energy = 975.0745 kcal/mol (973.1194 without restraints) Performing minimization step: 3864. Total energy = 974.7021 kcal/mol (972.7470 without restraints) Performing minimization step: 3865. Total energy = 974.3300 kcal/mol (972.3750 without restraints) Performing minimization step: 3866. Total energy = 973.9581 kcal/mol (972.0031 without restraints) Performing minimization step: 3867. Total energy = 973.5867 kcal/mol (971.6319 without restraints) Performing minimization step: 3868. Total energy = 973.2157 kcal/mol (971.2607 without restraints) Performing minimization step: 3869. Total energy = 972.8446 kcal/mol (970.8897 without restraints) Performing minimization step: 3870. Total energy = 972.4737 kcal/mol (970.5189 without restraints) Performing minimization step: 3871. Total energy = 972.1032 kcal/mol (970.1484 without restraints) Performing minimization step: 3872. Total energy = 971.7328 kcal/mol (969.7780 without restraints) Performing minimization step: 3873. Total energy = 971.3627 kcal/mol (969.4080 without restraints) Performing minimization step: 3874. Total energy = 970.9933 kcal/mol (969.0386 without restraints) Performing minimization step: 3875. Total energy = 970.6236 kcal/mol (968.6690 without restraints) Performing minimization step: 3876. Total energy = 970.2543 kcal/mol (968.2997 without restraints) Performing minimization step: 3877. Total energy = 969.8852 kcal/mol (967.9306 without restraints) Performing minimization step: 3878. Total energy = 969.5163 kcal/mol (967.5617 without restraints) Performing minimization step: 3879. Total energy = 969.1477 kcal/mol (967.1932 without restraints) Performing minimization step: 3880. Total energy = 968.7793 kcal/mol (966.8248 without restraints) Performing minimization step: 3881. Total energy = 968.4111 kcal/mol (966.4567 without restraints) Performing minimization step: 3882. Total energy = 968.0433 kcal/mol (966.0889 without restraints) Performing minimization step: 3883. Total energy = 967.6756 kcal/mol (965.7213 without restraints) Performing minimization step: 3884. Total energy = 967.3082 kcal/mol (965.3539 without restraints) Performing minimization step: 3885. Total energy = 966.9411 kcal/mol (964.9868 without restraints) Performing minimization step: 3886. Total energy = 966.5742 kcal/mol (964.6200 without restraints) Performing minimization step: 3887. Total energy = 966.2076 kcal/mol (964.2534 without restraints) Performing minimization step: 3888. Total energy = 965.8414 kcal/mol (963.8875 without restraints) Performing minimization step: 3889. Total energy = 965.4754 kcal/mol (963.5213 without restraints) Performing minimization step: 3890. Total energy = 965.1096 kcal/mol (963.1555 without restraints) Performing minimization step: 3891. Total energy = 964.7439 kcal/mol (962.7899 without restraints) Performing minimization step: 3892. Total energy = 964.3785 kcal/mol (962.4245 without restraints) Performing minimization step: 3893. Total energy = 964.0133 kcal/mol (962.0594 without restraints) Performing minimization step: 3894. Total energy = 963.6484 kcal/mol (961.6945 without restraints) Performing minimization step: 3895. Total energy = 963.2837 kcal/mol (961.3298 without restraints) Performing minimization step: 3896. Total energy = 962.9192 kcal/mol (960.9654 without restraints) Performing minimization step: 3897. Total energy = 962.5550 kcal/mol (960.6012 without restraints) Performing minimization step: 3898. Total energy = 962.1911 kcal/mol (960.2373 without restraints) Performing minimization step: 3899. Total energy = 961.8274 kcal/mol (959.8737 without restraints) Performing minimization step: 3900. Total energy = 961.4639 kcal/mol (959.5103 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 961.1009 kcal/mol (959.1473 without restraints) Performing minimization step: 3902. Total energy = 960.7379 kcal/mol (958.7843 without restraints) Performing minimization step: 3903. Total energy = 960.3752 kcal/mol (958.4216 without restraints) Performing minimization step: 3904. Total energy = 960.0127 kcal/mol (958.0592 without restraints) Performing minimization step: 3905. Total energy = 959.6504 kcal/mol (957.6969 without restraints) Performing minimization step: 3906. Total energy = 959.2884 kcal/mol (957.3350 without restraints) Performing minimization step: 3907. Total energy = 958.9266 kcal/mol (956.9732 without restraints) Performing minimization step: 3908. Total energy = 958.5651 kcal/mol (956.6117 without restraints) Performing minimization step: 3909. Total energy = 958.2040 kcal/mol (956.2507 without restraints) Performing minimization step: 3910. Total energy = 957.8431 kcal/mol (955.8897 without restraints) Performing minimization step: 3911. Total energy = 957.4822 kcal/mol (955.5290 without restraints) Performing minimization step: 3912. Total energy = 957.1216 kcal/mol (955.1684 without restraints) Performing minimization step: 3913. Total energy = 956.7613 kcal/mol (954.8082 without restraints) Performing minimization step: 3914. Total energy = 956.4012 kcal/mol (954.4481 without restraints) Performing minimization step: 3915. Total energy = 956.0413 kcal/mol (954.0881 without restraints) Performing minimization step: 3916. Total energy = 955.6816 kcal/mol (953.7285 without restraints) Performing minimization step: 3917. Total energy = 955.3222 kcal/mol (953.3693 without restraints) Performing minimization step: 3918. Total energy = 954.9632 kcal/mol (953.0104 without restraints) Performing minimization step: 3919. Total energy = 954.6045 kcal/mol (952.6516 without restraints) Performing minimization step: 3920. Total energy = 954.2458 kcal/mol (952.2929 without restraints) Performing minimization step: 3921. Total energy = 953.8874 kcal/mol (951.9346 without restraints) Performing minimization step: 3922. Total energy = 953.5292 kcal/mol (951.5765 without restraints) Performing minimization step: 3923. Total energy = 953.1713 kcal/mol (951.2186 without restraints) Performing minimization step: 3924. Total energy = 952.8135 kcal/mol (950.8608 without restraints) Performing minimization step: 3925. Total energy = 952.4560 kcal/mol (950.5034 without restraints) Performing minimization step: 3926. Total energy = 952.0988 kcal/mol (950.1462 without restraints) Performing minimization step: 3927. Total energy = 951.7418 kcal/mol (949.7893 without restraints) Performing minimization step: 3928. Total energy = 951.3851 kcal/mol (949.4326 without restraints) Performing minimization step: 3929. Total energy = 951.0286 kcal/mol (949.0761 without restraints) Performing minimization step: 3930. Total energy = 950.6723 kcal/mol (948.7199 without restraints) Performing minimization step: 3931. Total energy = 950.3163 kcal/mol (948.3639 without restraints) Performing minimization step: 3932. Total energy = 949.9605 kcal/mol (948.0081 without restraints) Performing minimization step: 3933. Total energy = 949.6051 kcal/mol (947.6528 without restraints) Performing minimization step: 3934. Total energy = 949.2498 kcal/mol (947.2975 without restraints) Performing minimization step: 3935. Total energy = 948.8947 kcal/mol (946.9425 without restraints) Performing minimization step: 3936. Total energy = 948.5401 kcal/mol (946.5879 without restraints) Performing minimization step: 3937. Total energy = 948.1855 kcal/mol (946.2333 without restraints) Performing minimization step: 3938. Total energy = 947.8311 kcal/mol (945.8791 without restraints) Performing minimization step: 3939. Total energy = 947.4770 kcal/mol (945.5250 without restraints) Performing minimization step: 3940. Total energy = 947.1231 kcal/mol (945.1711 without restraints) Performing minimization step: 3941. Total energy = 946.7696 kcal/mol (944.8177 without restraints) Performing minimization step: 3942. Total energy = 946.4162 kcal/mol (944.4643 without restraints) Performing minimization step: 3943. Total energy = 946.0630 kcal/mol (944.1112 without restraints) Performing minimization step: 3944. Total energy = 945.7101 kcal/mol (943.7582 without restraints) Performing minimization step: 3945. Total energy = 945.3574 kcal/mol (943.4056 without restraints) Performing minimization step: 3946. Total energy = 945.0049 kcal/mol (943.0531 without restraints) Performing minimization step: 3947. Total energy = 944.6526 kcal/mol (942.7009 without restraints) Performing minimization step: 3948. Total energy = 944.3006 kcal/mol (942.3489 without restraints) Performing minimization step: 3949. Total energy = 943.9488 kcal/mol (941.9972 without restraints) Performing minimization step: 3950. Total energy = 943.5972 kcal/mol (941.6457 without restraints) Performing minimization step: 3951. Total energy = 943.2459 kcal/mol (941.2944 without restraints) Performing minimization step: 3952. Total energy = 942.8948 kcal/mol (940.9434 without restraints) Performing minimization step: 3953. Total energy = 942.5440 kcal/mol (940.5925 without restraints) Performing minimization step: 3954. Total energy = 942.1937 kcal/mol (940.2424 without restraints) Performing minimization step: 3955. Total energy = 941.8434 kcal/mol (939.8921 without restraints) Performing minimization step: 3956. Total energy = 941.4934 kcal/mol (939.5422 without restraints) Performing minimization step: 3957. Total energy = 941.1436 kcal/mol (939.1923 without restraints) Performing minimization step: 3958. Total energy = 940.7939 kcal/mol (938.8427 without restraints) Performing minimization step: 3959. Total energy = 940.4444 kcal/mol (938.4932 without restraints) Performing minimization step: 3960. Total energy = 940.0952 kcal/mol (938.1440 without restraints) Performing minimization step: 3961. Total energy = 939.7464 kcal/mol (937.7953 without restraints) Performing minimization step: 3962. Total energy = 939.3976 kcal/mol (937.4466 without restraints) Performing minimization step: 3963. Total energy = 939.0491 kcal/mol (937.0981 without restraints) Performing minimization step: 3964. Total energy = 938.7008 kcal/mol (936.7498 without restraints) Performing minimization step: 3965. Total energy = 938.3527 kcal/mol (936.4018 without restraints) Performing minimization step: 3966. Total energy = 938.0049 kcal/mol (936.0540 without restraints) Performing minimization step: 3967. Total energy = 937.6573 kcal/mol (935.7065 without restraints) Performing minimization step: 3968. Total energy = 937.3099 kcal/mol (935.3592 without restraints) Performing minimization step: 3969. Total energy = 936.9627 kcal/mol (935.0119 without restraints) Performing minimization step: 3970. Total energy = 936.6156 kcal/mol (934.6650 without restraints) Performing minimization step: 3971. Total energy = 936.2690 kcal/mol (934.3184 without restraints) Performing minimization step: 3972. Total energy = 935.9227 kcal/mol (933.9723 without restraints) Performing minimization step: 3973. Total energy = 935.5766 kcal/mol (933.6261 without restraints) Performing minimization step: 3974. Total energy = 935.2306 kcal/mol (933.2801 without restraints) Performing minimization step: 3975. Total energy = 934.8848 kcal/mol (932.9344 without restraints) Performing minimization step: 3976. Total energy = 934.5393 kcal/mol (932.5889 without restraints) Performing minimization step: 3977. Total energy = 934.1940 kcal/mol (932.2437 without restraints) Performing minimization step: 3978. Total energy = 933.8491 kcal/mol (931.8988 without restraints) Performing minimization step: 3979. Total energy = 933.5042 kcal/mol (931.5540 without restraints) Performing minimization step: 3980. Total energy = 933.1596 kcal/mol (931.2094 without restraints) Performing minimization step: 3981. Total energy = 932.8152 kcal/mol (930.8650 without restraints) Performing minimization step: 3982. Total energy = 932.4710 kcal/mol (930.5209 without restraints) Performing minimization step: 3983. Total energy = 932.1270 kcal/mol (930.1770 without restraints) Performing minimization step: 3984. Total energy = 931.7835 kcal/mol (929.8335 without restraints) Performing minimization step: 3985. Total energy = 931.4398 kcal/mol (929.4898 without restraints) Performing minimization step: 3986. Total energy = 931.0965 kcal/mol (929.1466 without restraints) Performing minimization step: 3987. Total energy = 930.7535 kcal/mol (928.8036 without restraints) Performing minimization step: 3988. Total energy = 930.4107 kcal/mol (928.4609 without restraints) Performing minimization step: 3989. Total energy = 930.0681 kcal/mol (928.1184 without restraints) Performing minimization step: 3990. Total energy = 929.7258 kcal/mol (927.7761 without restraints) Performing minimization step: 3991. Total energy = 929.3837 kcal/mol (927.4340 without restraints) Performing minimization step: 3992. Total energy = 929.0417 kcal/mol (927.0922 without restraints) Performing minimization step: 3993. Total energy = 928.7001 kcal/mol (926.7505 without restraints) Performing minimization step: 3994. Total energy = 928.3588 kcal/mol (926.4095 without restraints) Performing minimization step: 3995. Total energy = 928.0177 kcal/mol (926.0683 without restraints) Performing minimization step: 3996. Total energy = 927.6767 kcal/mol (925.7273 without restraints) Performing minimization step: 3997. Total energy = 927.3359 kcal/mol (925.3866 without restraints) Performing minimization step: 3998. Total energy = 926.9954 kcal/mol (925.0462 without restraints) Performing minimization step: 3999. Total energy = 926.6552 kcal/mol (924.7059 without restraints) Performing minimization step: 4000. Total energy = 926.3151 kcal/mol (924.3659 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 925.9752 kcal/mol (924.0260 without restraints) Performing minimization step: 4002. Total energy = 925.6355 kcal/mol (923.6864 without restraints) Performing minimization step: 4003. Total energy = 925.2960 kcal/mol (923.3470 without restraints) Performing minimization step: 4004. Total energy = 924.9568 kcal/mol (923.0078 without restraints) Performing minimization step: 4005. Total energy = 924.6178 kcal/mol (922.6689 without restraints) Performing minimization step: 4006. Total energy = 924.2790 kcal/mol (922.3302 without restraints) Performing minimization step: 4007. Total energy = 923.9405 kcal/mol (921.9917 without restraints) Performing minimization step: 4008. Total energy = 923.6022 kcal/mol (921.6534 without restraints) Performing minimization step: 4009. Total energy = 923.2640 kcal/mol (921.3153 without restraints) Performing minimization step: 4010. Total energy = 922.9262 kcal/mol (920.9775 without restraints) Performing minimization step: 4011. Total energy = 922.5885 kcal/mol (920.6399 without restraints) Performing minimization step: 4012. Total energy = 922.2511 kcal/mol (920.3025 without restraints) Performing minimization step: 4013. Total energy = 921.9138 kcal/mol (919.9653 without restraints) Performing minimization step: 4014. Total energy = 921.5768 kcal/mol (919.6284 without restraints) Performing minimization step: 4015. Total energy = 921.2401 kcal/mol (919.2917 without restraints) Performing minimization step: 4016. Total energy = 920.9035 kcal/mol (918.9552 without restraints) Performing minimization step: 4017. Total energy = 920.5672 kcal/mol (918.6189 without restraints) Performing minimization step: 4018. Total energy = 920.2311 kcal/mol (918.2829 without restraints) Performing minimization step: 4019. Total energy = 919.8953 kcal/mol (917.9471 without restraints) Performing minimization step: 4020. Total energy = 919.5596 kcal/mol (917.6115 without restraints) Performing minimization step: 4021. Total energy = 919.2241 kcal/mol (917.2761 without restraints) Performing minimization step: 4022. Total energy = 918.8889 kcal/mol (916.9409 without restraints) Performing minimization step: 4023. Total energy = 918.5539 kcal/mol (916.6059 without restraints) Performing minimization step: 4024. Total energy = 918.2191 kcal/mol (916.2712 without restraints) Performing minimization step: 4025. Total energy = 917.8845 kcal/mol (915.9367 without restraints) Performing minimization step: 4026. Total energy = 917.5504 kcal/mol (915.6026 without restraints) Performing minimization step: 4027. Total energy = 917.2163 kcal/mol (915.2685 without restraints) Performing minimization step: 4028. Total energy = 916.8823 kcal/mol (914.9346 without restraints) Performing minimization step: 4029. Total energy = 916.5487 kcal/mol (914.6010 without restraints) Performing minimization step: 4030. Total energy = 916.2154 kcal/mol (914.2678 without restraints) Performing minimization step: 4031. Total energy = 915.8822 kcal/mol (913.9346 without restraints) Performing minimization step: 4032. Total energy = 915.5491 kcal/mol (913.6016 without restraints) Performing minimization step: 4033. Total energy = 915.2163 kcal/mol (913.2689 without restraints) Performing minimization step: 4034. Total energy = 914.8837 kcal/mol (912.9363 without restraints) Performing minimization step: 4035. Total energy = 914.5513 kcal/mol (912.6040 without restraints) Performing minimization step: 4036. Total energy = 914.2192 kcal/mol (912.2719 without restraints) Performing minimization step: 4037. Total energy = 913.8872 kcal/mol (911.9400 without restraints) Performing minimization step: 4038. Total energy = 913.5555 kcal/mol (911.6084 without restraints) Performing minimization step: 4039. Total energy = 913.2240 kcal/mol (911.2769 without restraints) Performing minimization step: 4040. Total energy = 912.8927 kcal/mol (910.9457 without restraints) Performing minimization step: 4041. Total energy = 912.5617 kcal/mol (910.6147 without restraints) Performing minimization step: 4042. Total energy = 912.2308 kcal/mol (910.2839 without restraints) Performing minimization step: 4043. Total energy = 911.9002 kcal/mol (909.9533 without restraints) Performing minimization step: 4044. Total energy = 911.5697 kcal/mol (909.6230 without restraints) Performing minimization step: 4045. Total energy = 911.2395 kcal/mol (909.2928 without restraints) Performing minimization step: 4046. Total energy = 910.9095 kcal/mol (908.9629 without restraints) Performing minimization step: 4047. Total energy = 910.5798 kcal/mol (908.6332 without restraints) Performing minimization step: 4048. Total energy = 910.2502 kcal/mol (908.3037 without restraints) Performing minimization step: 4049. Total energy = 909.9209 kcal/mol (907.9744 without restraints) Performing minimization step: 4050. Total energy = 909.5918 kcal/mol (907.6453 without restraints) Performing minimization step: 4051. Total energy = 909.2629 kcal/mol (907.3165 without restraints) Performing minimization step: 4052. Total energy = 908.9341 kcal/mol (906.9878 without restraints) Performing minimization step: 4053. Total energy = 908.6056 kcal/mol (906.6594 without restraints) Performing minimization step: 4054. Total energy = 908.2774 kcal/mol (906.3312 without restraints) Performing minimization step: 4055. Total energy = 907.9493 kcal/mol (906.0032 without restraints) Performing minimization step: 4056. Total energy = 907.6215 kcal/mol (905.6754 without restraints) Performing minimization step: 4057. Total energy = 907.2939 kcal/mol (905.3479 without restraints) Performing minimization step: 4058. Total energy = 906.9667 kcal/mol (905.0208 without restraints) Performing minimization step: 4059. Total energy = 906.6396 kcal/mol (904.6936 without restraints) Performing minimization step: 4060. Total energy = 906.3126 kcal/mol (904.3667 without restraints) Performing minimization step: 4061. Total energy = 905.9862 kcal/mol (904.0404 without restraints) Performing minimization step: 4062. Total energy = 905.6597 kcal/mol (903.7139 without restraints) Performing minimization step: 4063. Total energy = 905.3333 kcal/mol (903.3877 without restraints) Performing minimization step: 4064. Total energy = 905.0072 kcal/mol (903.0616 without restraints) Performing minimization step: 4065. Total energy = 904.6813 kcal/mol (902.7357 without restraints) Performing minimization step: 4066. Total energy = 904.3558 kcal/mol (902.4105 without restraints) Performing minimization step: 4067. Total energy = 904.0305 kcal/mol (902.0851 without restraints) Performing minimization step: 4068. Total energy = 903.7052 kcal/mol (901.7599 without restraints) Performing minimization step: 4069. Total energy = 903.3803 kcal/mol (901.4350 without restraints) Performing minimization step: 4070. Total energy = 903.0554 kcal/mol (901.1102 without restraints) Performing minimization step: 4071. Total energy = 902.7308 kcal/mol (900.7856 without restraints) Performing minimization step: 4072. Total energy = 902.4064 kcal/mol (900.4612 without restraints) Performing minimization step: 4073. Total energy = 902.0821 kcal/mol (900.1371 without restraints) Performing minimization step: 4074. Total energy = 901.7581 kcal/mol (899.8132 without restraints) Performing minimization step: 4075. Total energy = 901.4345 kcal/mol (899.4896 without restraints) Performing minimization step: 4076. Total energy = 901.1110 kcal/mol (899.1661 without restraints) Performing minimization step: 4077. Total energy = 900.7876 kcal/mol (898.8428 without restraints) Performing minimization step: 4078. Total energy = 900.4645 kcal/mol (898.5197 without restraints) Performing minimization step: 4079. Total energy = 900.1415 kcal/mol (898.1968 without restraints) Performing minimization step: 4080. Total energy = 899.8188 kcal/mol (897.8742 without restraints) Performing minimization step: 4081. Total energy = 899.4961 kcal/mol (897.5515 without restraints) Performing minimization step: 4082. Total energy = 899.1737 kcal/mol (897.2293 without restraints) Performing minimization step: 4083. Total energy = 898.8520 kcal/mol (896.9076 without restraints) Performing minimization step: 4084. Total energy = 898.5301 kcal/mol (896.5858 without restraints) Performing minimization step: 4085. Total energy = 898.2084 kcal/mol (896.2641 without restraints) Performing minimization step: 4086. Total energy = 897.8869 kcal/mol (895.9427 without restraints) Performing minimization step: 4087. Total energy = 897.5658 kcal/mol (895.6217 without restraints) Performing minimization step: 4088. Total energy = 897.2448 kcal/mol (895.3007 without restraints) Performing minimization step: 4089. Total energy = 896.9239 kcal/mol (894.9799 without restraints) Performing minimization step: 4090. Total energy = 896.6033 kcal/mol (894.6594 without restraints) Performing minimization step: 4091. Total energy = 896.2833 kcal/mol (894.3394 without restraints) Performing minimization step: 4092. Total energy = 895.9631 kcal/mol (894.0193 without restraints) Performing minimization step: 4093. Total energy = 895.6431 kcal/mol (893.6993 without restraints) Performing minimization step: 4094. Total energy = 895.3233 kcal/mol (893.3796 without restraints) Performing minimization step: 4095. Total energy = 895.0037 kcal/mol (893.0601 without restraints) Performing minimization step: 4096. Total energy = 894.6843 kcal/mol (892.7408 without restraints) Performing minimization step: 4097. Total energy = 894.3652 kcal/mol (892.4217 without restraints) Performing minimization step: 4098. Total energy = 894.0462 kcal/mol (892.1028 without restraints) Performing minimization step: 4099. Total energy = 893.7277 kcal/mol (891.7843 without restraints) Performing minimization step: 4100. Total energy = 893.4092 kcal/mol (891.4660 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 893.0906 kcal/mol (891.1474 without restraints) Performing minimization step: 4102. Total energy = 892.7724 kcal/mol (890.8293 without restraints) Performing minimization step: 4103. Total energy = 892.4545 kcal/mol (890.5114 without restraints) Performing minimization step: 4104. Total energy = 892.1368 kcal/mol (890.1938 without restraints) Performing minimization step: 4105. Total energy = 891.8193 kcal/mol (889.8763 without restraints) Performing minimization step: 4106. Total energy = 891.5020 kcal/mol (889.5591 without restraints) Performing minimization step: 4107. Total energy = 891.1852 kcal/mol (889.2424 without restraints) Performing minimization step: 4108. Total energy = 890.8683 kcal/mol (888.9256 without restraints) Performing minimization step: 4109. Total energy = 890.5518 kcal/mol (888.6092 without restraints) Performing minimization step: 4110. Total energy = 890.2353 kcal/mol (888.2927 without restraints) Performing minimization step: 4111. Total energy = 889.9191 kcal/mol (887.9766 without restraints) Performing minimization step: 4112. Total energy = 889.6032 kcal/mol (887.6608 without restraints) Performing minimization step: 4113. Total energy = 889.2874 kcal/mol (887.3450 without restraints) Performing minimization step: 4114. Total energy = 888.9719 kcal/mol (887.0296 without restraints) Performing minimization step: 4115. Total energy = 888.6565 kcal/mol (886.7142 without restraints) Performing minimization step: 4116. Total energy = 888.3412 kcal/mol (886.3990 without restraints) Performing minimization step: 4117. Total energy = 888.0262 kcal/mol (886.0841 without restraints) Performing minimization step: 4118. Total energy = 887.7113 kcal/mol (885.7693 without restraints) Performing minimization step: 4119. Total energy = 887.3967 kcal/mol (885.4547 without restraints) Performing minimization step: 4120. Total energy = 887.0822 kcal/mol (885.1403 without restraints) Performing minimization step: 4121. Total energy = 886.7680 kcal/mol (884.8262 without restraints) Performing minimization step: 4122. Total energy = 886.4540 kcal/mol (884.5122 without restraints) Performing minimization step: 4123. Total energy = 886.1401 kcal/mol (884.1985 without restraints) Performing minimization step: 4124. Total energy = 885.8265 kcal/mol (883.8849 without restraints) Performing minimization step: 4125. Total energy = 885.5131 kcal/mol (883.5716 without restraints) Performing minimization step: 4126. Total energy = 885.1999 kcal/mol (883.2584 without restraints) Performing minimization step: 4127. Total energy = 884.8869 kcal/mol (882.9455 without restraints) Performing minimization step: 4128. Total energy = 884.5741 kcal/mol (882.6328 without restraints) Performing minimization step: 4129. Total energy = 884.2615 kcal/mol (882.3202 without restraints) Performing minimization step: 4130. Total energy = 883.9492 kcal/mol (882.0081 without restraints) Performing minimization step: 4131. Total energy = 883.6370 kcal/mol (881.6959 without restraints) Performing minimization step: 4132. Total energy = 883.3250 kcal/mol (881.3840 without restraints) Performing minimization step: 4133. Total energy = 883.0132 kcal/mol (881.0723 without restraints) Performing minimization step: 4134. Total energy = 882.7016 kcal/mol (880.7608 without restraints) Performing minimization step: 4135. Total energy = 882.3902 kcal/mol (880.4495 without restraints) Performing minimization step: 4136. Total energy = 882.0792 kcal/mol (880.1386 without restraints) Performing minimization step: 4137. Total energy = 881.7683 kcal/mol (879.8277 without restraints) Performing minimization step: 4138. Total energy = 881.4575 kcal/mol (879.5169 without restraints) Performing minimization step: 4139. Total energy = 881.1469 kcal/mol (879.2064 without restraints) Performing minimization step: 4140. Total energy = 880.8366 kcal/mol (878.8963 without restraints) Performing minimization step: 4141. Total energy = 880.5266 kcal/mol (878.5862 without restraints) Performing minimization step: 4142. Total energy = 880.2166 kcal/mol (878.2763 without restraints) Performing minimization step: 4143. Total energy = 879.9068 kcal/mol (877.9666 without restraints) Performing minimization step: 4144. Total energy = 879.5972 kcal/mol (877.6571 without restraints) Performing minimization step: 4145. Total energy = 879.2881 kcal/mol (877.3481 without restraints) Performing minimization step: 4146. Total energy = 878.9789 kcal/mol (877.0389 without restraints) Performing minimization step: 4147. Total energy = 878.6699 kcal/mol (876.7300 without restraints) Performing minimization step: 4148. Total energy = 878.3614 kcal/mol (876.4216 without restraints) Performing minimization step: 4149. Total energy = 878.0528 kcal/mol (876.1131 without restraints) Performing minimization step: 4150. Total energy = 877.7444 kcal/mol (875.8048 without restraints) Performing minimization step: 4151. Total energy = 877.4363 kcal/mol (875.4967 without restraints) Performing minimization step: 4152. Total energy = 877.1283 kcal/mol (875.1888 without restraints) Performing minimization step: 4153. Total energy = 876.8206 kcal/mol (874.8811 without restraints) Performing minimization step: 4154. Total energy = 876.5132 kcal/mol (874.5738 without restraints) Performing minimization step: 4155. Total energy = 876.2058 kcal/mol (874.2665 without restraints) Performing minimization step: 4156. Total energy = 875.8988 kcal/mol (873.9596 without restraints) Performing minimization step: 4157. Total energy = 875.5918 kcal/mol (873.6527 without restraints) Performing minimization step: 4158. Total energy = 875.2851 kcal/mol (873.3460 without restraints) Performing minimization step: 4159. Total energy = 874.9785 kcal/mol (873.0395 without restraints) Performing minimization step: 4160. Total energy = 874.6721 kcal/mol (872.7332 without restraints) Performing minimization step: 4161. Total energy = 874.3659 kcal/mol (872.4271 without restraints) Performing minimization step: 4162. Total energy = 874.0599 kcal/mol (872.1212 without restraints) Performing minimization step: 4163. Total energy = 873.7541 kcal/mol (871.8155 without restraints) Performing minimization step: 4164. Total energy = 873.4485 kcal/mol (871.5100 without restraints) Performing minimization step: 4165. Total energy = 873.1431 kcal/mol (871.2047 without restraints) Performing minimization step: 4166. Total energy = 872.8379 kcal/mol (870.8996 without restraints) Performing minimization step: 4167. Total energy = 872.5329 kcal/mol (870.5946 without restraints) Performing minimization step: 4168. Total energy = 872.2281 kcal/mol (870.2899 without restraints) Performing minimization step: 4169. Total energy = 871.9235 kcal/mol (869.9853 without restraints) Performing minimization step: 4170. Total energy = 871.6189 kcal/mol (869.6808 without restraints) Performing minimization step: 4171. Total energy = 871.3146 kcal/mol (869.3766 without restraints) Performing minimization step: 4172. Total energy = 871.0106 kcal/mol (869.0727 without restraints) Performing minimization step: 4173. Total energy = 870.7068 kcal/mol (868.7690 without restraints) Performing minimization step: 4174. Total energy = 870.4033 kcal/mol (868.4656 without restraints) Performing minimization step: 4175. Total energy = 870.1000 kcal/mol (868.1624 without restraints) Performing minimization step: 4176. Total energy = 869.7968 kcal/mol (867.8593 without restraints) Performing minimization step: 4177. Total energy = 869.4938 kcal/mol (867.5563 without restraints) Performing minimization step: 4178. Total energy = 869.1910 kcal/mol (867.2536 without restraints) Performing minimization step: 4179. Total energy = 868.8883 kcal/mol (866.9510 without restraints) Performing minimization step: 4180. Total energy = 868.5859 kcal/mol (866.6486 without restraints) Performing minimization step: 4181. Total energy = 868.2836 kcal/mol (866.3465 without restraints) Performing minimization step: 4182. Total energy = 867.9816 kcal/mol (866.0445 without restraints) Performing minimization step: 4183. Total energy = 867.6797 kcal/mol (865.7427 without restraints) Performing minimization step: 4184. Total energy = 867.3780 kcal/mol (865.4411 without restraints) Performing minimization step: 4185. Total energy = 867.0765 kcal/mol (865.1397 without restraints) Performing minimization step: 4186. Total energy = 866.7755 kcal/mol (864.8387 without restraints) Performing minimization step: 4187. Total energy = 866.4744 kcal/mol (864.5377 without restraints) Performing minimization step: 4188. Total energy = 866.1735 kcal/mol (864.2369 without restraints) Performing minimization step: 4189. Total energy = 865.8728 kcal/mol (863.9363 without restraints) Performing minimization step: 4190. Total energy = 865.5723 kcal/mol (863.6359 without restraints) Performing minimization step: 4191. Total energy = 865.2720 kcal/mol (863.3357 without restraints) Performing minimization step: 4192. Total energy = 864.9719 kcal/mol (863.0357 without restraints) Performing minimization step: 4193. Total energy = 864.6720 kcal/mol (862.7358 without restraints) Performing minimization step: 4194. Total energy = 864.3725 kcal/mol (862.4365 without restraints) Performing minimization step: 4195. Total energy = 864.0730 kcal/mol (862.1371 without restraints) Performing minimization step: 4196. Total energy = 863.7738 kcal/mol (861.8380 without restraints) Performing minimization step: 4197. Total energy = 863.4747 kcal/mol (861.5389 without restraints) Performing minimization step: 4198. Total energy = 863.1757 kcal/mol (861.2400 without restraints) Performing minimization step: 4199. Total energy = 862.8770 kcal/mol (860.9414 without restraints) Performing minimization step: 4200. Total energy = 862.5784 kcal/mol (860.6429 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 862.2800 kcal/mol (860.3446 without restraints) Performing minimization step: 4202. Total energy = 861.9819 kcal/mol (860.0465 without restraints) Performing minimization step: 4203. Total energy = 861.6839 kcal/mol (859.7486 without restraints) Performing minimization step: 4204. Total energy = 861.3861 kcal/mol (859.4509 without restraints) Performing minimization step: 4205. Total energy = 861.0885 kcal/mol (859.1534 without restraints) Performing minimization step: 4206. Total energy = 860.7909 kcal/mol (858.8559 without restraints) Performing minimization step: 4207. Total energy = 860.4937 kcal/mol (858.5588 without restraints) Performing minimization step: 4208. Total energy = 860.1966 kcal/mol (858.2619 without restraints) Performing minimization step: 4209. Total energy = 859.8998 kcal/mol (857.9651 without restraints) Performing minimization step: 4210. Total energy = 859.6032 kcal/mol (857.6686 without restraints) Performing minimization step: 4211. Total energy = 859.3067 kcal/mol (857.3722 without restraints) Performing minimization step: 4212. Total energy = 859.0105 kcal/mol (857.0760 without restraints) Performing minimization step: 4213. Total energy = 858.7144 kcal/mol (856.7801 without restraints) Performing minimization step: 4214. Total energy = 858.4185 kcal/mol (856.4843 without restraints) Performing minimization step: 4215. Total energy = 858.1228 kcal/mol (856.1887 without restraints) Performing minimization step: 4216. Total energy = 857.8275 kcal/mol (855.8935 without restraints) Performing minimization step: 4217. Total energy = 857.5322 kcal/mol (855.5983 without restraints) Performing minimization step: 4218. Total energy = 857.2371 kcal/mol (855.3032 without restraints) Performing minimization step: 4219. Total energy = 856.9422 kcal/mol (855.0084 without restraints) Performing minimization step: 4220. Total energy = 856.6474 kcal/mol (854.7137 without restraints) Performing minimization step: 4221. Total energy = 856.3528 kcal/mol (854.4192 without restraints) Performing minimization step: 4222. Total energy = 856.0585 kcal/mol (854.1250 without restraints) Performing minimization step: 4223. Total energy = 855.7643 kcal/mol (853.8309 without restraints) Performing minimization step: 4224. Total energy = 855.4703 kcal/mol (853.5370 without restraints) Performing minimization step: 4225. Total energy = 855.1765 kcal/mol (853.2433 without restraints) Performing minimization step: 4226. Total energy = 854.8829 kcal/mol (852.9498 without restraints) Performing minimization step: 4227. Total energy = 854.5895 kcal/mol (852.6564 without restraints) Performing minimization step: 4228. Total energy = 854.2962 kcal/mol (852.3633 without restraints) Performing minimization step: 4229. Total energy = 854.0033 kcal/mol (852.0706 without restraints) Performing minimization step: 4230. Total energy = 853.7106 kcal/mol (851.7778 without restraints) Performing minimization step: 4231. Total energy = 853.4179 kcal/mol (851.4853 without restraints) Performing minimization step: 4232. Total energy = 853.1254 kcal/mol (851.1929 without restraints) Performing minimization step: 4233. Total energy = 852.8332 kcal/mol (850.9007 without restraints) Performing minimization step: 4234. Total energy = 852.5411 kcal/mol (850.6087 without restraints) Performing minimization step: 4235. Total energy = 852.2492 kcal/mol (850.3169 without restraints) Performing minimization step: 4236. Total energy = 851.9574 kcal/mol (850.0253 without restraints) Performing minimization step: 4237. Total energy = 851.6659 kcal/mol (849.7339 without restraints) Performing minimization step: 4238. Total energy = 851.3746 kcal/mol (849.4426 without restraints) Performing minimization step: 4239. Total energy = 851.0835 kcal/mol (849.1516 without restraints) Performing minimization step: 4240. Total energy = 850.7925 kcal/mol (848.8607 without restraints) Performing minimization step: 4241. Total energy = 850.5019 kcal/mol (848.5702 without restraints) Performing minimization step: 4242. Total energy = 850.2113 kcal/mol (848.2797 without restraints) Performing minimization step: 4243. Total energy = 849.9209 kcal/mol (847.9894 without restraints) Performing minimization step: 4244. Total energy = 849.6306 kcal/mol (847.6993 without restraints) Performing minimization step: 4245. Total energy = 849.3406 kcal/mol (847.4093 without restraints) Performing minimization step: 4246. Total energy = 849.0507 kcal/mol (847.1196 without restraints) Performing minimization step: 4247. Total energy = 848.7611 kcal/mol (846.8300 without restraints) Performing minimization step: 4248. Total energy = 848.4716 kcal/mol (846.5406 without restraints) Performing minimization step: 4249. Total energy = 848.1823 kcal/mol (846.2514 without restraints) Performing minimization step: 4250. Total energy = 847.8932 kcal/mol (845.9624 without restraints) Performing minimization step: 4251. Total energy = 847.6043 kcal/mol (845.6738 without restraints) Performing minimization step: 4252. Total energy = 847.3157 kcal/mol (845.3851 without restraints) Performing minimization step: 4253. Total energy = 847.0273 kcal/mol (845.0969 without restraints) Performing minimization step: 4254. Total energy = 846.7390 kcal/mol (844.8086 without restraints) Performing minimization step: 4255. Total energy = 846.4508 kcal/mol (844.5205 without restraints) Performing minimization step: 4256. Total energy = 846.1628 kcal/mol (844.2326 without restraints) Performing minimization step: 4257. Total energy = 845.8750 kcal/mol (843.9449 without restraints) Performing minimization step: 4258. Total energy = 845.5874 kcal/mol (843.6574 without restraints) Performing minimization step: 4259. Total energy = 845.2999 kcal/mol (843.3700 without restraints) Performing minimization step: 4260. Total energy = 845.0127 kcal/mol (843.0829 without restraints) Performing minimization step: 4261. Total energy = 844.7258 kcal/mol (842.7961 without restraints) Performing minimization step: 4262. Total energy = 844.4389 kcal/mol (842.5094 without restraints) Performing minimization step: 4263. Total energy = 844.1522 kcal/mol (842.2227 without restraints) Performing minimization step: 4264. Total energy = 843.8657 kcal/mol (841.9364 without restraints) Performing minimization step: 4265. Total energy = 843.5794 kcal/mol (841.6501 without restraints) Performing minimization step: 4266. Total energy = 843.2932 kcal/mol (841.3641 without restraints) Performing minimization step: 4267. Total energy = 843.0073 kcal/mol (841.0782 without restraints) Performing minimization step: 4268. Total energy = 842.7215 kcal/mol (840.7925 without restraints) Performing minimization step: 4269. Total energy = 842.4359 kcal/mol (840.5070 without restraints) Performing minimization step: 4270. Total energy = 842.1504 kcal/mol (840.2217 without restraints) Performing minimization step: 4271. Total energy = 841.8652 kcal/mol (839.9366 without restraints) Performing minimization step: 4272. Total energy = 841.5804 kcal/mol (839.6518 without restraints) Performing minimization step: 4273. Total energy = 841.2955 kcal/mol (839.3671 without restraints) Performing minimization step: 4274. Total energy = 841.0108 kcal/mol (839.0825 without restraints) Performing minimization step: 4275. Total energy = 840.7263 kcal/mol (838.7981 without restraints) Performing minimization step: 4276. Total energy = 840.4420 kcal/mol (838.5139 without restraints) Performing minimization step: 4277. Total energy = 840.1580 kcal/mol (838.2300 without restraints) Performing minimization step: 4278. Total energy = 839.8741 kcal/mol (837.9462 without restraints) Performing minimization step: 4279. Total energy = 839.5903 kcal/mol (837.6625 without restraints) Performing minimization step: 4280. Total energy = 839.3067 kcal/mol (837.3790 without restraints) Performing minimization step: 4281. Total energy = 839.0233 kcal/mol (837.0957 without restraints) Performing minimization step: 4282. Total energy = 838.7400 kcal/mol (836.8126 without restraints) Performing minimization step: 4283. Total energy = 838.4570 kcal/mol (836.5296 without restraints) Performing minimization step: 4284. Total energy = 838.1741 kcal/mol (836.2469 without restraints) Performing minimization step: 4285. Total energy = 837.8914 kcal/mol (835.9643 without restraints) Performing minimization step: 4286. Total energy = 837.6089 kcal/mol (835.6819 without restraints) Performing minimization step: 4287. Total energy = 837.3268 kcal/mol (835.3999 without restraints) Performing minimization step: 4288. Total energy = 837.0446 kcal/mol (835.1178 without restraints) Performing minimization step: 4289. Total energy = 836.7627 kcal/mol (834.8360 without restraints) Performing minimization step: 4290. Total energy = 836.4809 kcal/mol (834.5543 without restraints) Performing minimization step: 4291. Total energy = 836.1993 kcal/mol (834.2728 without restraints) Performing minimization step: 4292. Total energy = 835.9179 kcal/mol (833.9915 without restraints) Performing minimization step: 4293. Total energy = 835.6366 kcal/mol (833.7104 without restraints) Performing minimization step: 4294. Total energy = 835.3556 kcal/mol (833.4296 without restraints) Performing minimization step: 4295. Total energy = 835.0749 kcal/mol (833.1488 without restraints) Performing minimization step: 4296. Total energy = 834.7942 kcal/mol (832.8683 without restraints) Performing minimization step: 4297. Total energy = 834.5137 kcal/mol (832.5879 without restraints) Performing minimization step: 4298. Total energy = 834.2334 kcal/mol (832.3077 without restraints) Performing minimization step: 4299. Total energy = 833.9532 kcal/mol (832.0277 without restraints) Performing minimization step: 4300. Total energy = 833.6733 kcal/mol (831.7478 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 833.3935 kcal/mol (831.4681 without restraints) Performing minimization step: 4302. Total energy = 833.1138 kcal/mol (831.1886 without restraints) Performing minimization step: 4303. Total energy = 832.8344 kcal/mol (830.9092 without restraints) Performing minimization step: 4304. Total energy = 832.5551 kcal/mol (830.6301 without restraints) Performing minimization step: 4305. Total energy = 832.2760 kcal/mol (830.3511 without restraints) Performing minimization step: 4306. Total energy = 831.9971 kcal/mol (830.0723 without restraints) Performing minimization step: 4307. Total energy = 831.7186 kcal/mol (829.7939 without restraints) Performing minimization step: 4308. Total energy = 831.4403 kcal/mol (829.5157 without restraints) Performing minimization step: 4309. Total energy = 831.1621 kcal/mol (829.2377 without restraints) Performing minimization step: 4310. Total energy = 830.8839 kcal/mol (828.9596 without restraints) Performing minimization step: 4311. Total energy = 830.6061 kcal/mol (828.6819 without restraints) Performing minimization step: 4312. Total energy = 830.3283 kcal/mol (828.4042 without restraints) Performing minimization step: 4313. Total energy = 830.0506 kcal/mol (828.1266 without restraints) Performing minimization step: 4314. Total energy = 829.7731 kcal/mol (827.8493 without restraints) Performing minimization step: 4315. Total energy = 829.4958 kcal/mol (827.5721 without restraints) Performing minimization step: 4316. Total energy = 829.2187 kcal/mol (827.2950 without restraints) Performing minimization step: 4317. Total energy = 828.9419 kcal/mol (827.0184 without restraints) Performing minimization step: 4318. Total energy = 828.6651 kcal/mol (826.7417 without restraints) Performing minimization step: 4319. Total energy = 828.3885 kcal/mol (826.4652 without restraints) Performing minimization step: 4320. Total energy = 828.1121 kcal/mol (826.1889 without restraints) Performing minimization step: 4321. Total energy = 827.8359 kcal/mol (825.9128 without restraints) Performing minimization step: 4322. Total energy = 827.5598 kcal/mol (825.6368 without restraints) Performing minimization step: 4323. Total energy = 827.2839 kcal/mol (825.3611 without restraints) Performing minimization step: 4324. Total energy = 827.0082 kcal/mol (825.0855 without restraints) Performing minimization step: 4325. Total energy = 826.7327 kcal/mol (824.8101 without restraints) Performing minimization step: 4326. Total energy = 826.4573 kcal/mol (824.5348 without restraints) Performing minimization step: 4327. Total energy = 826.1821 kcal/mol (824.2598 without restraints) Performing minimization step: 4328. Total energy = 825.9071 kcal/mol (823.9849 without restraints) Performing minimization step: 4329. Total energy = 825.6324 kcal/mol (823.7102 without restraints) Performing minimization step: 4330. Total energy = 825.3577 kcal/mol (823.4357 without restraints) Performing minimization step: 4331. Total energy = 825.0832 kcal/mol (823.1613 without restraints) Performing minimization step: 4332. Total energy = 824.8089 kcal/mol (822.8872 without restraints) Performing minimization step: 4333. Total energy = 824.5349 kcal/mol (822.6133 without restraints) Performing minimization step: 4334. Total energy = 824.2610 kcal/mol (822.3395 without restraints) Performing minimization step: 4335. Total energy = 823.9875 kcal/mol (822.0661 without restraints) Performing minimization step: 4336. Total energy = 823.7139 kcal/mol (821.7926 without restraints) Performing minimization step: 4337. Total energy = 823.4405 kcal/mol (821.5193 without restraints) Performing minimization step: 4338. Total energy = 823.1673 kcal/mol (821.2462 without restraints) Performing minimization step: 4339. Total energy = 822.8942 kcal/mol (820.9733 without restraints) Performing minimization step: 4340. Total energy = 822.6213 kcal/mol (820.7005 without restraints) Performing minimization step: 4341. Total energy = 822.3486 kcal/mol (820.4279 without restraints) Performing minimization step: 4342. Total energy = 822.0760 kcal/mol (820.1554 without restraints) Performing minimization step: 4343. Total energy = 821.8037 kcal/mol (819.8832 without restraints) Performing minimization step: 4344. Total energy = 821.5315 kcal/mol (819.6112 without restraints) Performing minimization step: 4345. Total energy = 821.2595 kcal/mol (819.3393 without restraints) Performing minimization step: 4346. Total energy = 820.9876 kcal/mol (819.0675 without restraints) Performing minimization step: 4347. Total energy = 820.7159 kcal/mol (818.7960 without restraints) Performing minimization step: 4348. Total energy = 820.4444 kcal/mol (818.5246 without restraints) Performing minimization step: 4349. Total energy = 820.1730 kcal/mol (818.2533 without restraints) Performing minimization step: 4350. Total energy = 819.9019 kcal/mol (817.9823 without restraints) Performing minimization step: 4351. Total energy = 819.6309 kcal/mol (817.7114 without restraints) Performing minimization step: 4352. Total energy = 819.3602 kcal/mol (817.4409 without restraints) Performing minimization step: 4353. Total energy = 819.0895 kcal/mol (817.1702 without restraints) Performing minimization step: 4354. Total energy = 818.8189 kcal/mol (816.8998 without restraints) Performing minimization step: 4355. Total energy = 818.5486 kcal/mol (816.6296 without restraints) Performing minimization step: 4356. Total energy = 818.2787 kcal/mol (816.3598 without restraints) Performing minimization step: 4357. Total energy = 818.0087 kcal/mol (816.0900 without restraints) Performing minimization step: 4358. Total energy = 817.7389 kcal/mol (815.8204 without restraints) Performing minimization step: 4359. Total energy = 817.4693 kcal/mol (815.5509 without restraints) Performing minimization step: 4360. Total energy = 817.1999 kcal/mol (815.2815 without restraints) Performing minimization step: 4361. Total energy = 816.9306 kcal/mol (815.0124 without restraints) Performing minimization step: 4362. Total energy = 816.6619 kcal/mol (814.7438 without restraints) Performing minimization step: 4363. Total energy = 816.3928 kcal/mol (814.4748 without restraints) Performing minimization step: 4364. Total energy = 816.1240 kcal/mol (814.2062 without restraints) Performing minimization step: 4365. Total energy = 815.8554 kcal/mol (813.9377 without restraints) Performing minimization step: 4366. Total energy = 815.5870 kcal/mol (813.6694 without restraints) Performing minimization step: 4367. Total energy = 815.3188 kcal/mol (813.4013 without restraints) Performing minimization step: 4368. Total energy = 815.0507 kcal/mol (813.1334 without restraints) Performing minimization step: 4369. Total energy = 814.7828 kcal/mol (812.8656 without restraints) Performing minimization step: 4370. Total energy = 814.5151 kcal/mol (812.5980 without restraints) Performing minimization step: 4371. Total energy = 814.2475 kcal/mol (812.3306 without restraints) Performing minimization step: 4372. Total energy = 813.9802 kcal/mol (812.0634 without restraints) Performing minimization step: 4373. Total energy = 813.7129 kcal/mol (811.7963 without restraints) Performing minimization step: 4374. Total energy = 813.4459 kcal/mol (811.5294 without restraints) Performing minimization step: 4375. Total energy = 813.1790 kcal/mol (811.2626 without restraints) Performing minimization step: 4376. Total energy = 812.9123 kcal/mol (810.9960 without restraints) Performing minimization step: 4377. Total energy = 812.6458 kcal/mol (810.7296 without restraints) Performing minimization step: 4378. Total energy = 812.3797 kcal/mol (810.4636 without restraints) Performing minimization step: 4379. Total energy = 812.1135 kcal/mol (810.1976 without restraints) Performing minimization step: 4380. Total energy = 811.8476 kcal/mol (809.9319 without restraints) Performing minimization step: 4381. Total energy = 811.5817 kcal/mol (809.6661 without restraints) Performing minimization step: 4382. Total energy = 811.3161 kcal/mol (809.4006 without restraints) Performing minimization step: 4383. Total energy = 811.0505 kcal/mol (809.1352 without restraints) Performing minimization step: 4384. Total energy = 810.7853 kcal/mol (808.8702 without restraints) Performing minimization step: 4385. Total energy = 810.5202 kcal/mol (808.6051 without restraints) Performing minimization step: 4386. Total energy = 810.2552 kcal/mol (808.3403 without restraints) Performing minimization step: 4387. Total energy = 809.9904 kcal/mol (808.0756 without restraints) Performing minimization step: 4388. Total energy = 809.7257 kcal/mol (807.8110 without restraints) Performing minimization step: 4389. Total energy = 809.4612 kcal/mol (807.5467 without restraints) Performing minimization step: 4390. Total energy = 809.1969 kcal/mol (807.2824 without restraints) Performing minimization step: 4391. Total energy = 808.9327 kcal/mol (807.0184 without restraints) Performing minimization step: 4392. Total energy = 808.6688 kcal/mol (806.7548 without restraints) Performing minimization step: 4393. Total energy = 808.4051 kcal/mol (806.4911 without restraints) Performing minimization step: 4394. Total energy = 808.1414 kcal/mol (806.2275 without restraints) Performing minimization step: 4395. Total energy = 807.8780 kcal/mol (805.9642 without restraints) Performing minimization step: 4396. Total energy = 807.6147 kcal/mol (805.7010 without restraints) Performing minimization step: 4397. Total energy = 807.3515 kcal/mol (805.4380 without restraints) Performing minimization step: 4398. Total energy = 807.0888 kcal/mol (805.1754 without restraints) Performing minimization step: 4399. Total energy = 806.8260 kcal/mol (804.9128 without restraints) Performing minimization step: 4400. Total energy = 806.5631 kcal/mol (804.6501 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 806.3006 kcal/mol (804.3877 without restraints) Performing minimization step: 4402. Total energy = 806.0385 kcal/mol (804.1257 without restraints) Performing minimization step: 4403. Total energy = 805.7764 kcal/mol (803.8637 without restraints) Performing minimization step: 4404. Total energy = 805.5145 kcal/mol (803.6021 without restraints) Performing minimization step: 4405. Total energy = 805.2528 kcal/mol (803.3404 without restraints) Performing minimization step: 4406. Total energy = 804.9911 kcal/mol (803.0789 without restraints) Performing minimization step: 4407. Total energy = 804.7297 kcal/mol (802.8175 without restraints) Performing minimization step: 4408. Total energy = 804.4683 kcal/mol (802.5564 without restraints) Performing minimization step: 4409. Total energy = 804.2072 kcal/mol (802.2953 without restraints) Performing minimization step: 4410. Total energy = 803.9464 kcal/mol (802.0347 without restraints) Performing minimization step: 4411. Total energy = 803.6858 kcal/mol (801.7744 without restraints) Performing minimization step: 4412. Total energy = 803.4253 kcal/mol (801.5139 without restraints) Performing minimization step: 4413. Total energy = 803.1646 kcal/mol (801.2533 without restraints) Performing minimization step: 4414. Total energy = 802.9042 kcal/mol (800.9931 without restraints) Performing minimization step: 4415. Total energy = 802.6441 kcal/mol (800.7331 without restraints) Performing minimization step: 4416. Total energy = 802.3841 kcal/mol (800.4732 without restraints) Performing minimization step: 4417. Total energy = 802.1243 kcal/mol (800.2135 without restraints) Performing minimization step: 4418. Total energy = 801.8646 kcal/mol (799.9540 without restraints) Performing minimization step: 4419. Total energy = 801.6051 kcal/mol (799.6946 without restraints) Performing minimization step: 4420. Total energy = 801.3458 kcal/mol (799.4354 without restraints) Performing minimization step: 4421. Total energy = 801.0866 kcal/mol (799.1764 without restraints) Performing minimization step: 4422. Total energy = 800.8276 kcal/mol (798.9176 without restraints) Performing minimization step: 4423. Total energy = 800.5690 kcal/mol (798.6591 without restraints) Performing minimization step: 4424. Total energy = 800.3103 kcal/mol (798.4005 without restraints) Performing minimization step: 4425. Total energy = 800.0518 kcal/mol (798.1422 without restraints) Performing minimization step: 4426. Total energy = 799.7934 kcal/mol (797.8840 without restraints) Performing minimization step: 4427. Total energy = 799.5353 kcal/mol (797.6260 without restraints) Performing minimization step: 4428. Total energy = 799.2778 kcal/mol (797.3686 without restraints) Performing minimization step: 4429. Total energy = 799.0199 kcal/mol (797.1109 without restraints) Performing minimization step: 4430. Total energy = 798.7623 kcal/mol (796.8534 without restraints) Performing minimization step: 4431. Total energy = 798.5047 kcal/mol (796.5960 without restraints) Performing minimization step: 4432. Total energy = 798.2474 kcal/mol (796.3388 without restraints) Performing minimization step: 4433. Total energy = 797.9904 kcal/mol (796.0820 without restraints) Performing minimization step: 4434. Total energy = 797.7336 kcal/mol (795.8253 without restraints) Performing minimization step: 4435. Total energy = 797.4768 kcal/mol (795.5686 without restraints) Performing minimization step: 4436. Total energy = 797.2201 kcal/mol (795.3120 without restraints) Performing minimization step: 4437. Total energy = 796.9635 kcal/mol (795.0556 without restraints) Performing minimization step: 4438. Total energy = 796.7071 kcal/mol (794.7994 without restraints) Performing minimization step: 4439. Total energy = 796.4509 kcal/mol (794.5433 without restraints) Performing minimization step: 4440. Total energy = 796.1949 kcal/mol (794.2874 without restraints) Performing minimization step: 4441. Total energy = 795.9390 kcal/mol (794.0317 without restraints) Performing minimization step: 4442. Total energy = 795.6833 kcal/mol (793.7762 without restraints) Performing minimization step: 4443. Total energy = 795.4278 kcal/mol (793.5207 without restraints) Performing minimization step: 4444. Total energy = 795.1724 kcal/mol (793.2655 without restraints) Performing minimization step: 4445. Total energy = 794.9171 kcal/mol (793.0104 without restraints) Performing minimization step: 4446. Total energy = 794.6620 kcal/mol (792.7555 without restraints) Performing minimization step: 4447. Total energy = 794.4072 kcal/mol (792.5009 without restraints) Performing minimization step: 4448. Total energy = 794.1526 kcal/mol (792.2463 without restraints) Performing minimization step: 4449. Total energy = 793.8980 kcal/mol (791.9919 without restraints) Performing minimization step: 4450. Total energy = 793.6436 kcal/mol (791.7376 without restraints) Performing minimization step: 4451. Total energy = 793.3893 kcal/mol (791.4835 without restraints) Performing minimization step: 4452. Total energy = 793.1355 kcal/mol (791.2298 without restraints) Performing minimization step: 4453. Total energy = 792.8815 kcal/mol (790.9760 without restraints) Performing minimization step: 4454. Total energy = 792.6277 kcal/mol (790.7224 without restraints) Performing minimization step: 4455. Total energy = 792.3741 kcal/mol (790.4689 without restraints) Performing minimization step: 4456. Total energy = 792.1209 kcal/mol (790.2158 without restraints) Performing minimization step: 4457. Total energy = 791.8676 kcal/mol (789.9626 without restraints) Performing minimization step: 4458. Total energy = 791.6144 kcal/mol (789.7096 without restraints) Performing minimization step: 4459. Total energy = 791.3613 kcal/mol (789.4568 without restraints) Performing minimization step: 4460. Total energy = 791.1086 kcal/mol (789.2041 without restraints) Performing minimization step: 4461. Total energy = 790.8562 kcal/mol (788.9518 without restraints) Performing minimization step: 4462. Total energy = 790.6037 kcal/mol (788.6995 without restraints) Performing minimization step: 4463. Total energy = 790.3513 kcal/mol (788.4473 without restraints) Performing minimization step: 4464. Total energy = 790.0992 kcal/mol (788.1953 without restraints) Performing minimization step: 4465. Total energy = 789.8472 kcal/mol (787.9434 without restraints) Performing minimization step: 4466. Total energy = 789.5953 kcal/mol (787.6917 without restraints) Performing minimization step: 4467. Total energy = 789.3436 kcal/mol (787.4402 without restraints) Performing minimization step: 4468. Total energy = 789.0921 kcal/mol (787.1888 without restraints) Performing minimization step: 4469. Total energy = 788.8407 kcal/mol (786.9376 without restraints) Performing minimization step: 4470. Total energy = 788.5897 kcal/mol (786.6868 without restraints) Performing minimization step: 4471. Total energy = 788.3387 kcal/mol (786.4359 without restraints) Performing minimization step: 4472. Total energy = 788.0878 kcal/mol (786.1851 without restraints) Performing minimization step: 4473. Total energy = 787.8371 kcal/mol (785.9346 without restraints) Performing minimization step: 4474. Total energy = 787.5866 kcal/mol (785.6844 without restraints) Performing minimization step: 4475. Total energy = 787.3363 kcal/mol (785.4341 without restraints) Performing minimization step: 4476. Total energy = 787.0861 kcal/mol (785.1840 without restraints) Performing minimization step: 4477. Total energy = 786.8360 kcal/mol (784.9341 without restraints) Performing minimization step: 4478. Total energy = 786.5860 kcal/mol (784.6843 without restraints) Performing minimization step: 4479. Total energy = 786.3362 kcal/mol (784.4347 without restraints) Performing minimization step: 4480. Total energy = 786.0866 kcal/mol (784.1852 without restraints) Performing minimization step: 4481. Total energy = 785.8372 kcal/mol (783.9359 without restraints) Performing minimization step: 4482. Total energy = 785.5879 kcal/mol (783.6867 without restraints) Performing minimization step: 4483. Total energy = 785.3387 kcal/mol (783.4378 without restraints) Performing minimization step: 4484. Total energy = 785.0897 kcal/mol (783.1889 without restraints) Performing minimization step: 4485. Total energy = 784.8410 kcal/mol (782.9403 without restraints) Performing minimization step: 4486. Total energy = 784.5923 kcal/mol (782.6918 without restraints) Performing minimization step: 4487. Total energy = 784.3438 kcal/mol (782.4434 without restraints) Performing minimization step: 4488. Total energy = 784.0954 kcal/mol (782.1952 without restraints) Performing minimization step: 4489. Total energy = 783.8472 kcal/mol (781.9472 without restraints) Performing minimization step: 4490. Total energy = 783.5992 kcal/mol (781.6993 without restraints) Performing minimization step: 4491. Total energy = 783.3513 kcal/mol (781.4516 without restraints) Performing minimization step: 4492. Total energy = 783.1036 kcal/mol (781.2040 without restraints) Performing minimization step: 4493. Total energy = 782.8560 kcal/mol (780.9566 without restraints) Performing minimization step: 4494. Total energy = 782.6088 kcal/mol (780.7095 without restraints) Performing minimization step: 4495. Total energy = 782.3619 kcal/mol (780.4628 without restraints) Performing minimization step: 4496. Total energy = 782.1148 kcal/mol (780.2159 without restraints) Performing minimization step: 4497. Total energy = 781.8679 kcal/mol (779.9691 without restraints) Performing minimization step: 4498. Total energy = 781.6211 kcal/mol (779.7225 without restraints) Performing minimization step: 4499. Total energy = 781.3748 kcal/mol (779.4766 without restraints) Performing minimization step: 4500. Total energy = 781.1286 kcal/mol (779.2303 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 780.8823 kcal/mol (778.9841 without restraints) Performing minimization step: 4502. Total energy = 780.6361 kcal/mol (778.7381 without restraints) Performing minimization step: 4503. Total energy = 780.3901 kcal/mol (778.4923 without restraints) Performing minimization step: 4504. Total energy = 780.1443 kcal/mol (778.2466 without restraints) Performing minimization step: 4505. Total energy = 779.8986 kcal/mol (778.0011 without restraints) Performing minimization step: 4506. Total energy = 779.6531 kcal/mol (777.7558 without restraints) Performing minimization step: 4507. Total energy = 779.4077 kcal/mol (777.5106 without restraints) Performing minimization step: 4508. Total energy = 779.1625 kcal/mol (777.2655 without restraints) Performing minimization step: 4509. Total energy = 778.9175 kcal/mol (777.0207 without restraints) Performing minimization step: 4510. Total energy = 778.6726 kcal/mol (776.7760 without restraints) Performing minimization step: 4511. Total energy = 778.4279 kcal/mol (776.5314 without restraints) Performing minimization step: 4512. Total energy = 778.1834 kcal/mol (776.2870 without restraints) Performing minimization step: 4513. Total energy = 777.9389 kcal/mol (776.0427 without restraints) Performing minimization step: 4514. Total energy = 777.6946 kcal/mol (775.7986 without restraints) Performing minimization step: 4515. Total energy = 777.4507 kcal/mol (775.5548 without restraints) Performing minimization step: 4516. Total energy = 777.2067 kcal/mol (775.3110 without restraints) Performing minimization step: 4517. Total energy = 776.9629 kcal/mol (775.0674 without restraints) Performing minimization step: 4518. Total energy = 776.7193 kcal/mol (774.8239 without restraints) Performing minimization step: 4519. Total energy = 776.4759 kcal/mol (774.5807 without restraints) Performing minimization step: 4520. Total energy = 776.2326 kcal/mol (774.3375 without restraints) Performing minimization step: 4521. Total energy = 775.9894 kcal/mol (774.0945 without restraints) Performing minimization step: 4522. Total energy = 775.7463 kcal/mol (773.8516 without restraints) Performing minimization step: 4523. Total energy = 775.5035 kcal/mol (773.6089 without restraints) Performing minimization step: 4524. Total energy = 775.2607 kcal/mol (773.3663 without restraints) Performing minimization step: 4525. Total energy = 775.0183 kcal/mol (773.1241 without restraints) Performing minimization step: 4526. Total energy = 774.7760 kcal/mol (772.8819 without restraints) Performing minimization step: 4527. Total energy = 774.5337 kcal/mol (772.6398 without restraints) Performing minimization step: 4528. Total energy = 774.2916 kcal/mol (772.3978 without restraints) Performing minimization step: 4529. Total energy = 774.0496 kcal/mol (772.1560 without restraints) Performing minimization step: 4530. Total energy = 773.8079 kcal/mol (771.9145 without restraints) Performing minimization step: 4531. Total energy = 773.5663 kcal/mol (771.6730 without restraints) Performing minimization step: 4532. Total energy = 773.3248 kcal/mol (771.4317 without restraints) Performing minimization step: 4533. Total energy = 773.0840 kcal/mol (771.1911 without restraints) Performing minimization step: 4534. Total energy = 772.8428 kcal/mol (770.9500 without restraints) Performing minimization step: 4535. Total energy = 772.6017 kcal/mol (770.7091 without restraints) Performing minimization step: 4536. Total energy = 772.3609 kcal/mol (770.4685 without restraints) Performing minimization step: 4537. Total energy = 772.1201 kcal/mol (770.2279 without restraints) Performing minimization step: 4538. Total energy = 771.8795 kcal/mol (769.9874 without restraints) Performing minimization step: 4539. Total energy = 771.6391 kcal/mol (769.7472 without restraints) Performing minimization step: 4540. Total energy = 771.3988 kcal/mol (769.5071 without restraints) Performing minimization step: 4541. Total energy = 771.1587 kcal/mol (769.2671 without restraints) Performing minimization step: 4542. Total energy = 770.9190 kcal/mol (769.0276 without restraints) Performing minimization step: 4543. Total energy = 770.6791 kcal/mol (768.7879 without restraints) Performing minimization step: 4544. Total energy = 770.4396 kcal/mol (768.5486 without restraints) Performing minimization step: 4545. Total energy = 770.2001 kcal/mol (768.3092 without restraints) Performing minimization step: 4546. Total energy = 769.9607 kcal/mol (768.0700 without restraints) Performing minimization step: 4547. Total energy = 769.7215 kcal/mol (767.8310 without restraints) Performing minimization step: 4548. Total energy = 769.4825 kcal/mol (767.5921 without restraints) Performing minimization step: 4549. Total energy = 769.2438 kcal/mol (767.3536 without restraints) Performing minimization step: 4550. Total energy = 769.0050 kcal/mol (767.1150 without restraints) Performing minimization step: 4551. Total energy = 768.7664 kcal/mol (766.8765 without restraints) Performing minimization step: 4552. Total energy = 768.5280 kcal/mol (766.6382 without restraints) Performing minimization step: 4553. Total energy = 768.2896 kcal/mol (766.4001 without restraints) Performing minimization step: 4554. Total energy = 768.0515 kcal/mol (766.1621 without restraints) Performing minimization step: 4555. Total energy = 767.8135 kcal/mol (765.9243 without restraints) Performing minimization step: 4556. Total energy = 767.5756 kcal/mol (765.6866 without restraints) Performing minimization step: 4557. Total energy = 767.3379 kcal/mol (765.4490 without restraints) Performing minimization step: 4558. Total energy = 767.1003 kcal/mol (765.2116 without restraints) Performing minimization step: 4559. Total energy = 766.8629 kcal/mol (764.9744 without restraints) Performing minimization step: 4560. Total energy = 766.6256 kcal/mol (764.7373 without restraints) Performing minimization step: 4561. Total energy = 766.3885 kcal/mol (764.5004 without restraints) Performing minimization step: 4562. Total energy = 766.1516 kcal/mol (764.2636 without restraints) Performing minimization step: 4563. Total energy = 765.9148 kcal/mol (764.0269 without restraints) Performing minimization step: 4564. Total energy = 765.6781 kcal/mol (763.7905 without restraints) Performing minimization step: 4565. Total energy = 765.4416 kcal/mol (763.5541 without restraints) Performing minimization step: 4566. Total energy = 765.2052 kcal/mol (763.3179 without restraints) Performing minimization step: 4567. Total energy = 764.9690 kcal/mol (763.0819 without restraints) Performing minimization step: 4568. Total energy = 764.7330 kcal/mol (762.8460 without restraints) Performing minimization step: 4569. Total energy = 764.4971 kcal/mol (762.6103 without restraints) Performing minimization step: 4570. Total energy = 764.2613 kcal/mol (762.3747 without restraints) Performing minimization step: 4571. Total energy = 764.0257 kcal/mol (762.1393 without restraints) Performing minimization step: 4572. Total energy = 763.7902 kcal/mol (761.9040 without restraints) Performing minimization step: 4573. Total energy = 763.5549 kcal/mol (761.6688 without restraints) Performing minimization step: 4574. Total energy = 763.3197 kcal/mol (761.4338 without restraints) Performing minimization step: 4575. Total energy = 763.0848 kcal/mol (761.1990 without restraints) Performing minimization step: 4576. Total energy = 762.8499 kcal/mol (760.9643 without restraints) Performing minimization step: 4577. Total energy = 762.6152 kcal/mol (760.7298 without restraints) Performing minimization step: 4578. Total energy = 762.3806 kcal/mol (760.4954 without restraints) Performing minimization step: 4579. Total energy = 762.1462 kcal/mol (760.2612 without restraints) Performing minimization step: 4580. Total energy = 761.9119 kcal/mol (760.0271 without restraints) Performing minimization step: 4581. Total energy = 761.6778 kcal/mol (759.7931 without restraints) Performing minimization step: 4582. Total energy = 761.4438 kcal/mol (759.5593 without restraints) Performing minimization step: 4583. Total energy = 761.2100 kcal/mol (759.3257 without restraints) Performing minimization step: 4584. Total energy = 760.9763 kcal/mol (759.0922 without restraints) Performing minimization step: 4585. Total energy = 760.7428 kcal/mol (758.8588 without restraints) Performing minimization step: 4586. Total energy = 760.5094 kcal/mol (758.6256 without restraints) Performing minimization step: 4587. Total energy = 760.2761 kcal/mol (758.3925 without restraints) Performing minimization step: 4588. Total energy = 760.0430 kcal/mol (758.1596 without restraints) Performing minimization step: 4589. Total energy = 759.8101 kcal/mol (757.9269 without restraints) Performing minimization step: 4590. Total energy = 759.5774 kcal/mol (757.6943 without restraints) Performing minimization step: 4591. Total energy = 759.3448 kcal/mol (757.4620 without restraints) Performing minimization step: 4592. Total energy = 759.1124 kcal/mol (757.2297 without restraints) Performing minimization step: 4593. Total energy = 758.8800 kcal/mol (756.9975 without restraints) Performing minimization step: 4594. Total energy = 758.6478 kcal/mol (756.7655 without restraints) Performing minimization step: 4595. Total energy = 758.4158 kcal/mol (756.5336 without restraints) Performing minimization step: 4596. Total energy = 758.1839 kcal/mol (756.3019 without restraints) Performing minimization step: 4597. Total energy = 757.9521 kcal/mol (756.0703 without restraints) Performing minimization step: 4598. Total energy = 757.7205 kcal/mol (755.8389 without restraints) Performing minimization step: 4599. Total energy = 757.4891 kcal/mol (755.6076 without restraints) Performing minimization step: 4600. Total energy = 757.2578 kcal/mol (755.3765 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 757.0266 kcal/mol (755.1455 without restraints) Performing minimization step: 4602. Total energy = 756.7955 kcal/mol (754.9146 without restraints) Performing minimization step: 4603. Total energy = 756.5645 kcal/mol (754.6839 without restraints) Performing minimization step: 4604. Total energy = 756.3339 kcal/mol (754.4533 without restraints) Performing minimization step: 4605. Total energy = 756.1035 kcal/mol (754.2231 without restraints) Performing minimization step: 4606. Total energy = 755.8730 kcal/mol (753.9928 without restraints) Performing minimization step: 4607. Total energy = 755.6427 kcal/mol (753.7627 without restraints) Performing minimization step: 4608. Total energy = 755.4126 kcal/mol (753.5327 without restraints) Performing minimization step: 4609. Total energy = 755.1826 kcal/mol (753.3029 without restraints) Performing minimization step: 4610. Total energy = 754.9525 kcal/mol (753.0731 without restraints) Performing minimization step: 4611. Total energy = 754.7228 kcal/mol (752.8436 without restraints) Performing minimization step: 4612. Total energy = 754.4936 kcal/mol (752.6145 without restraints) Performing minimization step: 4613. Total energy = 754.2642 kcal/mol (752.3853 without restraints) Performing minimization step: 4614. Total energy = 754.0349 kcal/mol (752.1562 without restraints) Performing minimization step: 4615. Total energy = 753.8058 kcal/mol (751.9272 without restraints) Performing minimization step: 4616. Total energy = 753.5768 kcal/mol (751.6984 without restraints) Performing minimization step: 4617. Total energy = 753.3479 kcal/mol (751.4698 without restraints) Performing minimization step: 4618. Total energy = 753.1192 kcal/mol (751.2412 without restraints) Performing minimization step: 4619. Total energy = 752.8907 kcal/mol (751.0129 without restraints) Performing minimization step: 4620. Total energy = 752.6622 kcal/mol (750.7846 without restraints) Performing minimization step: 4621. Total energy = 752.4341 kcal/mol (750.5568 without restraints) Performing minimization step: 4622. Total energy = 752.2061 kcal/mol (750.3288 without restraints) Performing minimization step: 4623. Total energy = 751.9781 kcal/mol (750.1010 without restraints) Performing minimization step: 4624. Total energy = 751.7503 kcal/mol (749.8734 without restraints) Performing minimization step: 4625. Total energy = 751.5226 kcal/mol (749.6459 without restraints) Performing minimization step: 4626. Total energy = 751.2950 kcal/mol (749.4185 without restraints) Performing minimization step: 4627. Total energy = 751.0678 kcal/mol (749.1915 without restraints) Performing minimization step: 4628. Total energy = 750.8406 kcal/mol (748.9644 without restraints) Performing minimization step: 4629. Total energy = 750.6134 kcal/mol (748.7375 without restraints) Performing minimization step: 4630. Total energy = 750.3865 kcal/mol (748.5107 without restraints) Performing minimization step: 4631. Total energy = 750.1596 kcal/mol (748.2840 without restraints) Performing minimization step: 4632. Total energy = 749.9330 kcal/mol (748.0576 without restraints) Performing minimization step: 4633. Total energy = 749.7067 kcal/mol (747.8315 without restraints) Performing minimization step: 4634. Total energy = 749.4803 kcal/mol (747.6053 without restraints) Performing minimization step: 4635. Total energy = 749.2545 kcal/mol (747.3796 without restraints) Performing minimization step: 4636. Total energy = 749.0284 kcal/mol (747.1537 without restraints) Performing minimization step: 4637. Total energy = 748.8024 kcal/mol (746.9279 without restraints) Performing minimization step: 4638. Total energy = 748.5766 kcal/mol (746.7023 without restraints) Performing minimization step: 4639. Total energy = 748.3510 kcal/mol (746.4769 without restraints) Performing minimization step: 4640. Total energy = 748.1254 kcal/mol (746.2515 without restraints) Performing minimization step: 4641. Total energy = 747.9000 kcal/mol (746.0263 without restraints) Performing minimization step: 4642. Total energy = 747.6749 kcal/mol (745.8014 without restraints) Performing minimization step: 4643. Total energy = 747.4498 kcal/mol (745.5765 without restraints) Performing minimization step: 4644. Total energy = 747.2249 kcal/mol (745.3517 without restraints) Performing minimization step: 4645. Total energy = 747.0000 kcal/mol (745.1271 without restraints) Performing minimization step: 4646. Total energy = 746.7753 kcal/mol (744.9025 without restraints) Performing minimization step: 4647. Total energy = 746.5509 kcal/mol (744.6784 without restraints) Performing minimization step: 4648. Total energy = 746.3265 kcal/mol (744.4541 without restraints) Performing minimization step: 4649. Total energy = 746.1023 kcal/mol (744.2301 without restraints) Performing minimization step: 4650. Total energy = 745.8781 kcal/mol (744.0061 without restraints) Performing minimization step: 4651. Total energy = 745.6542 kcal/mol (743.7823 without restraints) Performing minimization step: 4652. Total energy = 745.4305 kcal/mol (743.5589 without restraints) Performing minimization step: 4653. Total energy = 745.2068 kcal/mol (743.3354 without restraints) Performing minimization step: 4654. Total energy = 744.9833 kcal/mol (743.1120 without restraints) Performing minimization step: 4655. Total energy = 744.7599 kcal/mol (742.8888 without restraints) Performing minimization step: 4656. Total energy = 744.5366 kcal/mol (742.6657 without restraints) Performing minimization step: 4657. Total energy = 744.3138 kcal/mol (742.4431 without restraints) Performing minimization step: 4658. Total energy = 744.0908 kcal/mol (742.2203 without restraints) Performing minimization step: 4659. Total energy = 743.8680 kcal/mol (741.9977 without restraints) Performing minimization step: 4660. Total energy = 743.6453 kcal/mol (741.7752 without restraints) Performing minimization step: 4661. Total energy = 743.4229 kcal/mol (741.5530 without restraints) Performing minimization step: 4662. Total energy = 743.2005 kcal/mol (741.3308 without restraints) Performing minimization step: 4663. Total energy = 742.9782 kcal/mol (741.1087 without restraints) Performing minimization step: 4664. Total energy = 742.7562 kcal/mol (740.8869 without restraints) Performing minimization step: 4665. Total energy = 742.5345 kcal/mol (740.6653 without restraints) Performing minimization step: 4666. Total energy = 742.3126 kcal/mol (740.4437 without restraints) Performing minimization step: 4667. Total energy = 742.0909 kcal/mol (740.2221 without restraints) Performing minimization step: 4668. Total energy = 741.8694 kcal/mol (740.0010 without restraints) Performing minimization step: 4669. Total energy = 741.6481 kcal/mol (739.7797 without restraints) Performing minimization step: 4670. Total energy = 741.4268 kcal/mol (739.5586 without restraints) Performing minimization step: 4671. Total energy = 741.2056 kcal/mol (739.3376 without restraints) Performing minimization step: 4672. Total energy = 740.9846 kcal/mol (739.1168 without restraints) Performing minimization step: 4673. Total energy = 740.7637 kcal/mol (738.8961 without restraints) Performing minimization step: 4674. Total energy = 740.5430 kcal/mol (738.6756 without restraints) Performing minimization step: 4675. Total energy = 740.3223 kcal/mol (738.4551 without restraints) Performing minimization step: 4676. Total energy = 740.1019 kcal/mol (738.2349 without restraints) Performing minimization step: 4677. Total energy = 739.8815 kcal/mol (738.0147 without restraints) Performing minimization step: 4678. Total energy = 739.6617 kcal/mol (737.7952 without restraints) Performing minimization step: 4679. Total energy = 739.4420 kcal/mol (737.5755 without restraints) Performing minimization step: 4680. Total energy = 739.2221 kcal/mol (737.3558 without restraints) Performing minimization step: 4681. Total energy = 739.0023 kcal/mol (737.1362 without restraints) Performing minimization step: 4682. Total energy = 738.7826 kcal/mol (736.9168 without restraints) Performing minimization step: 4683. Total energy = 738.5632 kcal/mol (736.6975 without restraints) Performing minimization step: 4684. Total energy = 738.3439 kcal/mol (736.4786 without restraints) Performing minimization step: 4685. Total energy = 738.1248 kcal/mol (736.2596 without restraints) Performing minimization step: 4686. Total energy = 737.9058 kcal/mol (736.0407 without restraints) Performing minimization step: 4687. Total energy = 737.6868 kcal/mol (735.8219 without restraints) Performing minimization step: 4688. Total energy = 737.4680 kcal/mol (735.6033 without restraints) Performing minimization step: 4689. Total energy = 737.2494 kcal/mol (735.3849 without restraints) Performing minimization step: 4690. Total energy = 737.0309 kcal/mol (735.1666 without restraints) Performing minimization step: 4691. Total energy = 736.8122 kcal/mol (734.9481 without restraints) Performing minimization step: 4692. Total energy = 736.5939 kcal/mol (734.7301 without restraints) Performing minimization step: 4693. Total energy = 736.3760 kcal/mol (734.5123 without restraints) Performing minimization step: 4694. Total energy = 736.1580 kcal/mol (734.2945 without restraints) Performing minimization step: 4695. Total energy = 735.9402 kcal/mol (734.0769 without restraints) Performing minimization step: 4696. Total energy = 735.7227 kcal/mol (733.8596 without restraints) Performing minimization step: 4697. Total energy = 735.5051 kcal/mol (733.6422 without restraints) Performing minimization step: 4698. Total energy = 735.2877 kcal/mol (733.4250 without restraints) Performing minimization step: 4699. Total energy = 735.0705 kcal/mol (733.2080 without restraints) Performing minimization step: 4700. Total energy = 734.8533 kcal/mol (732.9910 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 734.6363 kcal/mol (732.7742 without restraints) Performing minimization step: 4702. Total energy = 734.4194 kcal/mol (732.5575 without restraints) Performing minimization step: 4703. Total energy = 734.2027 kcal/mol (732.3409 without restraints) Performing minimization step: 4704. Total energy = 733.9860 kcal/mol (732.1245 without restraints) Performing minimization step: 4705. Total energy = 733.7698 kcal/mol (731.9085 without restraints) Performing minimization step: 4706. Total energy = 733.5534 kcal/mol (731.6923 without restraints) Performing minimization step: 4707. Total energy = 733.3373 kcal/mol (731.4763 without restraints) Performing minimization step: 4708. Total energy = 733.1212 kcal/mol (731.2605 without restraints) Performing minimization step: 4709. Total energy = 732.9053 kcal/mol (731.0448 without restraints) Performing minimization step: 4710. Total energy = 732.6895 kcal/mol (730.8292 without restraints) Performing minimization step: 4711. Total energy = 732.4739 kcal/mol (730.6137 without restraints) Performing minimization step: 4712. Total energy = 732.2583 kcal/mol (730.3984 without restraints) Performing minimization step: 4713. Total energy = 732.0429 kcal/mol (730.1832 without restraints) Performing minimization step: 4714. Total energy = 731.8277 kcal/mol (729.9682 without restraints) Performing minimization step: 4715. Total energy = 731.6126 kcal/mol (729.7533 without restraints) Performing minimization step: 4716. Total energy = 731.3976 kcal/mol (729.5385 without restraints) Performing minimization step: 4717. Total energy = 731.1832 kcal/mol (729.3243 without restraints) Performing minimization step: 4718. Total energy = 730.9685 kcal/mol (729.1098 without restraints) Performing minimization step: 4719. Total energy = 730.7540 kcal/mol (728.8954 without restraints) Performing minimization step: 4720. Total energy = 730.5395 kcal/mol (728.6812 without restraints) Performing minimization step: 4721. Total energy = 730.3252 kcal/mol (728.4671 without restraints) Performing minimization step: 4722. Total energy = 730.1112 kcal/mol (728.2534 without restraints) Performing minimization step: 4723. Total energy = 729.8973 kcal/mol (728.0396 without restraints) Performing minimization step: 4724. Total energy = 729.6834 kcal/mol (727.8259 without restraints) Performing minimization step: 4725. Total energy = 729.4697 kcal/mol (727.6124 without restraints) Performing minimization step: 4726. Total energy = 729.2561 kcal/mol (727.3990 without restraints) Performing minimization step: 4727. Total energy = 729.0426 kcal/mol (727.1857 without restraints) Performing minimization step: 4728. Total energy = 728.8292 kcal/mol (726.9725 without restraints) Performing minimization step: 4729. Total energy = 728.6160 kcal/mol (726.7595 without restraints) Performing minimization step: 4730. Total energy = 728.4029 kcal/mol (726.5466 without restraints) Performing minimization step: 4731. Total energy = 728.1902 kcal/mol (726.3341 without restraints) Performing minimization step: 4732. Total energy = 727.9774 kcal/mol (726.1215 without restraints) Performing minimization step: 4733. Total energy = 727.7647 kcal/mol (725.9090 without restraints) Performing minimization step: 4734. Total energy = 727.5523 kcal/mol (725.6968 without restraints) Performing minimization step: 4735. Total energy = 727.3399 kcal/mol (725.4846 without restraints) Performing minimization step: 4736. Total energy = 727.1276 kcal/mol (725.2726 without restraints) Performing minimization step: 4737. Total energy = 726.9157 kcal/mol (725.0608 without restraints) Performing minimization step: 4738. Total energy = 726.7037 kcal/mol (724.8490 without restraints) Performing minimization step: 4739. Total energy = 726.4918 kcal/mol (724.6373 without restraints) Performing minimization step: 4740. Total energy = 726.2800 kcal/mol (724.4258 without restraints) Performing minimization step: 4741. Total energy = 726.0684 kcal/mol (724.2143 without restraints) Performing minimization step: 4742. Total energy = 725.8569 kcal/mol (724.0031 without restraints) Performing minimization step: 4743. Total energy = 725.6456 kcal/mol (723.7919 without restraints) Performing minimization step: 4744. Total energy = 725.4344 kcal/mol (723.5809 without restraints) Performing minimization step: 4745. Total energy = 725.2233 kcal/mol (723.3701 without restraints) Performing minimization step: 4746. Total energy = 725.0124 kcal/mol (723.1593 without restraints) Performing minimization step: 4747. Total energy = 724.8016 kcal/mol (722.9487 without restraints) Performing minimization step: 4748. Total energy = 724.5909 kcal/mol (722.7382 without restraints) Performing minimization step: 4749. Total energy = 724.3803 kcal/mol (722.5279 without restraints) Performing minimization step: 4750. Total energy = 724.1699 kcal/mol (722.3177 without restraints) Performing minimization step: 4751. Total energy = 723.9597 kcal/mol (722.1076 without restraints) Performing minimization step: 4752. Total energy = 723.7495 kcal/mol (721.8977 without restraints) Performing minimization step: 4753. Total energy = 723.5395 kcal/mol (721.6879 without restraints) Performing minimization step: 4754. Total energy = 723.3296 kcal/mol (721.4782 without restraints) Performing minimization step: 4755. Total energy = 723.1198 kcal/mol (721.2687 without restraints) Performing minimization step: 4756. Total energy = 722.9103 kcal/mol (721.0593 without restraints) Performing minimization step: 4757. Total energy = 722.7008 kcal/mol (720.8500 without restraints) Performing minimization step: 4758. Total energy = 722.4916 kcal/mol (720.6411 without restraints) Performing minimization step: 4759. Total energy = 722.2824 kcal/mol (720.4320 without restraints) Performing minimization step: 4760. Total energy = 722.0733 kcal/mol (720.2231 without restraints) Performing minimization step: 4761. Total energy = 721.8643 kcal/mol (720.0144 without restraints) Performing minimization step: 4762. Total energy = 721.6555 kcal/mol (719.8058 without restraints) Performing minimization step: 4763. Total energy = 721.4468 kcal/mol (719.5973 without restraints) Performing minimization step: 4764. Total energy = 721.2385 kcal/mol (719.3892 without restraints) Performing minimization step: 4765. Total energy = 721.0301 kcal/mol (719.1809 without restraints) Performing minimization step: 4766. Total energy = 720.8217 kcal/mol (718.9728 without restraints) Performing minimization step: 4767. Total energy = 720.6138 kcal/mol (718.7651 without restraints) Performing minimization step: 4768. Total energy = 720.4058 kcal/mol (718.5573 without restraints) Performing minimization step: 4769. Total energy = 720.1979 kcal/mol (718.3496 without restraints) Performing minimization step: 4770. Total energy = 719.9901 kcal/mol (718.1420 without restraints) Performing minimization step: 4771. Total energy = 719.7824 kcal/mol (717.9346 without restraints) Performing minimization step: 4772. Total energy = 719.5749 kcal/mol (717.7273 without restraints) Performing minimization step: 4773. Total energy = 719.3675 kcal/mol (717.5201 without restraints) Performing minimization step: 4774. Total energy = 719.1603 kcal/mol (717.3130 without restraints) Performing minimization step: 4775. Total energy = 718.9532 kcal/mol (717.1061 without restraints) Performing minimization step: 4776. Total energy = 718.7462 kcal/mol (716.8993 without restraints) Performing minimization step: 4777. Total energy = 718.5394 kcal/mol (716.6929 without restraints) Performing minimization step: 4778. Total energy = 718.3327 kcal/mol (716.4863 without restraints) Performing minimization step: 4779. Total energy = 718.1261 kcal/mol (716.2799 without restraints) Performing minimization step: 4780. Total energy = 717.9197 kcal/mol (716.0737 without restraints) Performing minimization step: 4781. Total energy = 717.7133 kcal/mol (715.8675 without restraints) Performing minimization step: 4782. Total energy = 717.5071 kcal/mol (715.6615 without restraints) Performing minimization step: 4783. Total energy = 717.3012 kcal/mol (715.4559 without restraints) Performing minimization step: 4784. Total energy = 717.0953 kcal/mol (715.2501 without restraints) Performing minimization step: 4785. Total energy = 716.8895 kcal/mol (715.0445 without restraints) Performing minimization step: 4786. Total energy = 716.6838 kcal/mol (714.8390 without restraints) Performing minimization step: 4787. Total energy = 716.4782 kcal/mol (714.6337 without restraints) Performing minimization step: 4788. Total energy = 716.2728 kcal/mol (714.4284 without restraints) Performing minimization step: 4789. Total energy = 716.0674 kcal/mol (714.2233 without restraints) Performing minimization step: 4790. Total energy = 715.8623 kcal/mol (714.0184 without restraints) Performing minimization step: 4791. Total energy = 715.6572 kcal/mol (713.8136 without restraints) Performing minimization step: 4792. Total energy = 715.4523 kcal/mol (713.6088 without restraints) Performing minimization step: 4793. Total energy = 715.2475 kcal/mol (713.4042 without restraints) Performing minimization step: 4794. Total energy = 715.0431 kcal/mol (713.2000 without restraints) Performing minimization step: 4795. Total energy = 714.8386 kcal/mol (712.9959 without restraints) Performing minimization step: 4796. Total energy = 714.6344 kcal/mol (712.7919 without restraints) Performing minimization step: 4797. Total energy = 714.4305 kcal/mol (712.5881 without restraints) Performing minimization step: 4798. Total energy = 714.2264 kcal/mol (712.3841 without restraints) Performing minimization step: 4799. Total energy = 714.0223 kcal/mol (712.1803 without restraints) Performing minimization step: 4800. Total energy = 713.8184 kcal/mol (711.9766 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 713.6147 kcal/mol (711.7731 without restraints) Performing minimization step: 4802. Total energy = 713.4108 kcal/mol (711.5695 without restraints) Performing minimization step: 4803. Total energy = 713.2073 kcal/mol (711.3662 without restraints) Performing minimization step: 4804. Total energy = 713.0039 kcal/mol (711.1630 without restraints) Performing minimization step: 4805. Total energy = 712.8007 kcal/mol (710.9599 without restraints) Performing minimization step: 4806. Total energy = 712.5975 kcal/mol (710.7570 without restraints) Performing minimization step: 4807. Total energy = 712.3946 kcal/mol (710.5543 without restraints) Performing minimization step: 4808. Total energy = 712.1917 kcal/mol (710.3516 without restraints) Performing minimization step: 4809. Total energy = 711.9890 kcal/mol (710.1491 without restraints) Performing minimization step: 4810. Total energy = 711.7863 kcal/mol (709.9467 without restraints) Performing minimization step: 4811. Total energy = 711.5838 kcal/mol (709.7444 without restraints) Performing minimization step: 4812. Total energy = 711.3817 kcal/mol (709.5424 without restraints) Performing minimization step: 4813. Total energy = 711.1794 kcal/mol (709.3404 without restraints) Performing minimization step: 4814. Total energy = 710.9773 kcal/mol (709.1385 without restraints) Performing minimization step: 4815. Total energy = 710.7753 kcal/mol (708.9367 without restraints) Performing minimization step: 4816. Total energy = 710.5735 kcal/mol (708.7351 without restraints) Performing minimization step: 4817. Total energy = 710.3717 kcal/mol (708.5336 without restraints) Performing minimization step: 4818. Total energy = 710.1701 kcal/mol (708.3322 without restraints) Performing minimization step: 4819. Total energy = 709.9687 kcal/mol (708.1309 without restraints) Performing minimization step: 4820. Total energy = 709.7674 kcal/mol (707.9298 without restraints) Performing minimization step: 4821. Total energy = 709.5663 kcal/mol (707.7290 without restraints) Performing minimization step: 4822. Total energy = 709.3653 kcal/mol (707.5282 without restraints) Performing minimization step: 4823. Total energy = 709.1643 kcal/mol (707.3274 without restraints) Performing minimization step: 4824. Total energy = 708.9635 kcal/mol (707.1268 without restraints) Performing minimization step: 4825. Total energy = 708.7627 kcal/mol (706.9263 without restraints) Performing minimization step: 4826. Total energy = 708.5621 kcal/mol (706.7259 without restraints) Performing minimization step: 4827. Total energy = 708.3617 kcal/mol (706.5257 without restraints) Performing minimization step: 4828. Total energy = 708.1614 kcal/mol (706.3255 without restraints) Performing minimization step: 4829. Total energy = 707.9612 kcal/mol (706.1255 without restraints) Performing minimization step: 4830. Total energy = 707.7611 kcal/mol (705.9257 without restraints) Performing minimization step: 4831. Total energy = 707.5611 kcal/mol (705.7259 without restraints) Performing minimization step: 4832. Total energy = 707.3613 kcal/mol (705.5264 without restraints) Performing minimization step: 4833. Total energy = 707.1616 kcal/mol (705.3269 without restraints) Performing minimization step: 4834. Total energy = 706.9620 kcal/mol (705.1275 without restraints) Performing minimization step: 4835. Total energy = 706.7628 kcal/mol (704.9285 without restraints) Performing minimization step: 4836. Total energy = 706.5635 kcal/mol (704.7294 without restraints) Performing minimization step: 4837. Total energy = 706.3643 kcal/mol (704.5304 without restraints) Performing minimization step: 4838. Total energy = 706.1652 kcal/mol (704.3315 without restraints) Performing minimization step: 4839. Total energy = 705.9664 kcal/mol (704.1330 without restraints) Performing minimization step: 4840. Total energy = 705.7676 kcal/mol (703.9344 without restraints) Performing minimization step: 4841. Total energy = 705.5691 kcal/mol (703.7361 without restraints) Performing minimization step: 4842. Total energy = 705.3705 kcal/mol (703.5377 without restraints) Performing minimization step: 4843. Total energy = 705.1722 kcal/mol (703.3397 without restraints) Performing minimization step: 4844. Total energy = 704.9740 kcal/mol (703.1416 without restraints) Performing minimization step: 4845. Total energy = 704.7758 kcal/mol (702.9436 without restraints) Performing minimization step: 4846. Total energy = 704.5777 kcal/mol (702.7457 without restraints) Performing minimization step: 4847. Total energy = 704.3797 kcal/mol (702.5480 without restraints) Performing minimization step: 4848. Total energy = 704.1819 kcal/mol (702.3503 without restraints) Performing minimization step: 4849. Total energy = 703.9841 kcal/mol (702.1528 without restraints) Performing minimization step: 4850. Total energy = 703.7865 kcal/mol (701.9555 without restraints) Performing minimization step: 4851. Total energy = 703.5891 kcal/mol (701.7582 without restraints) Performing minimization step: 4852. Total energy = 703.3917 kcal/mol (701.5611 without restraints) Performing minimization step: 4853. Total energy = 703.1945 kcal/mol (701.3641 without restraints) Performing minimization step: 4854. Total energy = 702.9974 kcal/mol (701.1672 without restraints) Performing minimization step: 4855. Total energy = 702.8004 kcal/mol (700.9704 without restraints) Performing minimization step: 4856. Total energy = 702.6036 kcal/mol (700.7738 without restraints) Performing minimization step: 4857. Total energy = 702.4069 kcal/mol (700.5774 without restraints) Performing minimization step: 4858. Total energy = 702.2104 kcal/mol (700.3811 without restraints) Performing minimization step: 4859. Total energy = 702.0139 kcal/mol (700.1847 without restraints) Performing minimization step: 4860. Total energy = 701.8175 kcal/mol (699.9886 without restraints) Performing minimization step: 4861. Total energy = 701.6213 kcal/mol (699.7926 without restraints) Performing minimization step: 4862. Total energy = 701.4252 kcal/mol (699.5967 without restraints) Performing minimization step: 4863. Total energy = 701.2292 kcal/mol (699.4010 without restraints) Performing minimization step: 4864. Total energy = 701.0335 kcal/mol (699.2055 without restraints) Performing minimization step: 4865. Total energy = 700.8378 kcal/mol (699.0100 without restraints) Performing minimization step: 4866. Total energy = 700.6422 kcal/mol (698.8146 without restraints) Performing minimization step: 4867. Total energy = 700.4467 kcal/mol (698.6193 without restraints) Performing minimization step: 4868. Total energy = 700.2516 kcal/mol (698.4244 without restraints) Performing minimization step: 4869. Total energy = 700.0565 kcal/mol (698.2295 without restraints) Performing minimization step: 4870. Total energy = 699.8616 kcal/mol (698.0350 without restraints) Performing minimization step: 4871. Total energy = 699.6667 kcal/mol (697.8402 without restraints) Performing minimization step: 4872. Total energy = 699.4718 kcal/mol (697.6455 without restraints) Performing minimization step: 4873. Total energy = 699.2771 kcal/mol (697.4510 without restraints) Performing minimization step: 4874. Total energy = 699.0824 kcal/mol (697.2566 without restraints) Performing minimization step: 4875. Total energy = 698.8879 kcal/mol (697.0623 without restraints) Performing minimization step: 4876. Total energy = 698.6935 kcal/mol (696.8681 without restraints) Performing minimization step: 4877. Total energy = 698.4993 kcal/mol (696.6740 without restraints) Performing minimization step: 4878. Total energy = 698.3051 kcal/mol (696.4801 without restraints) Performing minimization step: 4879. Total energy = 698.1111 kcal/mol (696.2863 without restraints) Performing minimization step: 4880. Total energy = 697.9172 kcal/mol (696.0926 without restraints) Performing minimization step: 4881. Total energy = 697.7235 kcal/mol (695.8992 without restraints) Performing minimization step: 4882. Total energy = 697.5299 kcal/mol (695.7058 without restraints) Performing minimization step: 4883. Total energy = 697.3364 kcal/mol (695.5125 without restraints) Performing minimization step: 4884. Total energy = 697.1431 kcal/mol (695.3194 without restraints) Performing minimization step: 4885. Total energy = 696.9498 kcal/mol (695.1264 without restraints) Performing minimization step: 4886. Total energy = 696.7566 kcal/mol (694.9334 without restraints) Performing minimization step: 4887. Total energy = 696.5636 kcal/mol (694.7406 without restraints) Performing minimization step: 4888. Total energy = 696.3708 kcal/mol (694.5480 without restraints) Performing minimization step: 4889. Total energy = 696.1781 kcal/mol (694.3556 without restraints) Performing minimization step: 4890. Total energy = 695.9855 kcal/mol (694.1631 without restraints) Performing minimization step: 4891. Total energy = 695.7929 kcal/mol (693.9708 without restraints) Performing minimization step: 4892. Total energy = 695.6007 kcal/mol (693.7790 without restraints) Performing minimization step: 4893. Total energy = 695.4088 kcal/mol (693.5871 without restraints) Performing minimization step: 4894. Total energy = 695.2166 kcal/mol (693.3951 without restraints) Performing minimization step: 4895. Total energy = 695.0246 kcal/mol (693.2033 without restraints) Performing minimization step: 4896. Total energy = 694.8326 kcal/mol (693.0115 without restraints) Performing minimization step: 4897. Total energy = 694.6407 kcal/mol (692.8199 without restraints) Performing minimization step: 4898. Total energy = 694.4490 kcal/mol (692.6284 without restraints) Performing minimization step: 4899. Total energy = 694.2574 kcal/mol (692.4370 without restraints) Performing minimization step: 4900. Total energy = 694.0659 kcal/mol (692.2457 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 693.8745 kcal/mol (692.0546 without restraints) Performing minimization step: 4902. Total energy = 693.6834 kcal/mol (691.8637 without restraints) Performing minimization step: 4903. Total energy = 693.4923 kcal/mol (691.6728 without restraints) Performing minimization step: 4904. Total energy = 693.3013 kcal/mol (691.4820 without restraints) Performing minimization step: 4905. Total energy = 693.1104 kcal/mol (691.2913 without restraints) Performing minimization step: 4906. Total energy = 692.9196 kcal/mol (691.1008 without restraints) Performing minimization step: 4907. Total energy = 692.7290 kcal/mol (690.9103 without restraints) Performing minimization step: 4908. Total energy = 692.5384 kcal/mol (690.7200 without restraints) Performing minimization step: 4909. Total energy = 692.3480 kcal/mol (690.5298 without restraints) Performing minimization step: 4910. Total energy = 692.1577 kcal/mol (690.3398 without restraints) Performing minimization step: 4911. Total energy = 691.9676 kcal/mol (690.1498 without restraints) Performing minimization step: 4912. Total energy = 691.7775 kcal/mol (689.9600 without restraints) Performing minimization step: 4913. Total energy = 691.5877 kcal/mol (689.7704 without restraints) Performing minimization step: 4914. Total energy = 691.3979 kcal/mol (689.5808 without restraints) Performing minimization step: 4915. Total energy = 691.2082 kcal/mol (689.3913 without restraints) Performing minimization step: 4916. Total energy = 691.0186 kcal/mol (689.2020 without restraints) Performing minimization step: 4917. Total energy = 690.8291 kcal/mol (689.0127 without restraints) Performing minimization step: 4918. Total energy = 690.6398 kcal/mol (688.8236 without restraints) Performing minimization step: 4919. Total energy = 690.4506 kcal/mol (688.6346 without restraints) Performing minimization step: 4920. Total energy = 690.2615 kcal/mol (688.4457 without restraints) Performing minimization step: 4921. Total energy = 690.0725 kcal/mol (688.2569 without restraints) Performing minimization step: 4922. Total energy = 689.8836 kcal/mol (688.0683 without restraints) Performing minimization step: 4923. Total energy = 689.6948 kcal/mol (687.8797 without restraints) Performing minimization step: 4924. Total energy = 689.5062 kcal/mol (687.6913 without restraints) Performing minimization step: 4925. Total energy = 689.3177 kcal/mol (687.5030 without restraints) Performing minimization step: 4926. Total energy = 689.1293 kcal/mol (687.3148 without restraints) Performing minimization step: 4927. Total energy = 688.9412 kcal/mol (687.1269 without restraints) Performing minimization step: 4928. Total energy = 688.7530 kcal/mol (686.9390 without restraints) Performing minimization step: 4929. Total energy = 688.5649 kcal/mol (686.7512 without restraints) Performing minimization step: 4930. Total energy = 688.3770 kcal/mol (686.5634 without restraints) Performing minimization step: 4931. Total energy = 688.1894 kcal/mol (686.3761 without restraints) Performing minimization step: 4932. Total energy = 688.0017 kcal/mol (686.1886 without restraints) Performing minimization step: 4933. Total energy = 687.8141 kcal/mol (686.0012 without restraints) Performing minimization step: 4934. Total energy = 687.6268 kcal/mol (685.8142 without restraints) Performing minimization step: 4935. Total energy = 687.4393 kcal/mol (685.6268 without restraints) Performing minimization step: 4936. Total energy = 687.2522 kcal/mol (685.4400 without restraints) Performing minimization step: 4937. Total energy = 687.0651 kcal/mol (685.2531 without restraints) Performing minimization step: 4938. Total energy = 686.8781 kcal/mol (685.0663 without restraints) Performing minimization step: 4939. Total energy = 686.6913 kcal/mol (684.8797 without restraints) Performing minimization step: 4940. Total energy = 686.5045 kcal/mol (684.6932 without restraints) Performing minimization step: 4941. Total energy = 686.3181 kcal/mol (684.5072 without restraints) Performing minimization step: 4942. Total energy = 686.1318 kcal/mol (684.3209 without restraints) Performing minimization step: 4943. Total energy = 685.9453 kcal/mol (684.1347 without restraints) Performing minimization step: 4944. Total energy = 685.7590 kcal/mol (683.9486 without restraints) Performing minimization step: 4945. Total energy = 685.5729 kcal/mol (683.7626 without restraints) Performing minimization step: 4946. Total energy = 685.3868 kcal/mol (683.5768 without restraints) Performing minimization step: 4947. Total energy = 685.2009 kcal/mol (683.3911 without restraints) Performing minimization step: 4948. Total energy = 685.0151 kcal/mol (683.2055 without restraints) Performing minimization step: 4949. Total energy = 684.8295 kcal/mol (683.0202 without restraints) Performing minimization step: 4950. Total energy = 684.6439 kcal/mol (682.8348 without restraints) Performing minimization step: 4951. Total energy = 684.4584 kcal/mol (682.6496 without restraints) Performing minimization step: 4952. Total energy = 684.2731 kcal/mol (682.4644 without restraints) Performing minimization step: 4953. Total energy = 684.0878 kcal/mol (682.2794 without restraints) Performing minimization step: 4954. Total energy = 683.9027 kcal/mol (682.0945 without restraints) Performing minimization step: 4955. Total energy = 683.7177 kcal/mol (681.9097 without restraints) Performing minimization step: 4956. Total energy = 683.5328 kcal/mol (681.7250 without restraints) Performing minimization step: 4957. Total energy = 683.3480 kcal/mol (681.5405 without restraints) Performing minimization step: 4958. Total energy = 683.1635 kcal/mol (681.3562 without restraints) Performing minimization step: 4959. Total energy = 682.9790 kcal/mol (681.1719 without restraints) Performing minimization step: 4960. Total energy = 682.7945 kcal/mol (680.9877 without restraints) Performing minimization step: 4961. Total energy = 682.6102 kcal/mol (680.8035 without restraints) Performing minimization step: 4962. Total energy = 682.4260 kcal/mol (680.6196 without restraints) Performing minimization step: 4963. Total energy = 682.2419 kcal/mol (680.4357 without restraints) Performing minimization step: 4964. Total energy = 682.0579 kcal/mol (680.2519 without restraints) Performing minimization step: 4965. Total energy = 681.8743 kcal/mol (680.0685 without restraints) Performing minimization step: 4966. Total energy = 681.6906 kcal/mol (679.8850 without restraints) Performing minimization step: 4967. Total energy = 681.5071 kcal/mol (679.7018 without restraints) Performing minimization step: 4968. Total energy = 681.3236 kcal/mol (679.5185 without restraints) Performing minimization step: 4969. Total energy = 681.1402 kcal/mol (679.3353 without restraints) Performing minimization step: 4970. Total energy = 680.9571 kcal/mol (679.1524 without restraints) Performing minimization step: 4971. Total energy = 680.7741 kcal/mol (678.9697 without restraints) Performing minimization step: 4972. Total energy = 680.5908 kcal/mol (678.7866 without restraints) Performing minimization step: 4973. Total energy = 680.4079 kcal/mol (678.6039 without restraints) Performing minimization step: 4974. Total energy = 680.2250 kcal/mol (678.4213 without restraints) Performing minimization step: 4975. Total energy = 680.0423 kcal/mol (678.2388 without restraints) Performing minimization step: 4976. Total energy = 679.8597 kcal/mol (678.0564 without restraints) Performing minimization step: 4977. Total energy = 679.6774 kcal/mol (677.8743 without restraints) Performing minimization step: 4978. Total energy = 679.4952 kcal/mol (677.6924 without restraints) Performing minimization step: 4979. Total energy = 679.3130 kcal/mol (677.5103 without restraints) Performing minimization step: 4980. Total energy = 679.1308 kcal/mol (677.3284 without restraints) Performing minimization step: 4981. Total energy = 678.9488 kcal/mol (677.1466 without restraints) Performing minimization step: 4982. Total energy = 678.7669 kcal/mol (676.9649 without restraints) Performing minimization step: 4983. Total energy = 678.5851 kcal/mol (676.7833 without restraints) Performing minimization step: 4984. Total energy = 678.4034 kcal/mol (676.6018 without restraints) Performing minimization step: 4985. Total energy = 678.2219 kcal/mol (676.4207 without restraints) Performing minimization step: 4986. Total energy = 678.0405 kcal/mol (676.2394 without restraints) Performing minimization step: 4987. Total energy = 677.8592 kcal/mol (676.0583 without restraints) Performing minimization step: 4988. Total energy = 677.6779 kcal/mol (675.8773 without restraints) Performing minimization step: 4989. Total energy = 677.4968 kcal/mol (675.6964 without restraints) Performing minimization step: 4990. Total energy = 677.3158 kcal/mol (675.5156 without restraints) Performing minimization step: 4991. Total energy = 677.1349 kcal/mol (675.3349 without restraints) Performing minimization step: 4992. Total energy = 676.9541 kcal/mol (675.1543 without restraints) Performing minimization step: 4993. Total energy = 676.7734 kcal/mol (674.9738 without restraints) Performing minimization step: 4994. Total energy = 676.5928 kcal/mol (674.7935 without restraints) Performing minimization step: 4995. Total energy = 676.4126 kcal/mol (674.6135 without restraints) Performing minimization step: 4996. Total energy = 676.2322 kcal/mol (674.4334 without restraints) Performing minimization step: 4997. Total energy = 676.0520 kcal/mol (674.2533 without restraints) Performing minimization step: 4998. Total energy = 675.8719 kcal/mol (674.0734 without restraints) Performing minimization step: 4999. Total energy = 675.6919 kcal/mol (673.8937 without restraints) Performing minimization step: 5000. Total energy = 675.5120 kcal/mol (673.7140 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/1392b360/tmp/cluster.3_mdr_refx/cluster.3_mdr_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to cluster.3_mdr_refx.pdb DONE!