==> SEQ1.build_model_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:42 2026 ATOM 1 P C A 3 156.219 152.112 280.384 1.00 0.00 P ATOM 2 OP1 C A 3 156.677 153.424 280.924 1.00 0.00 O ATOM 3 OP2 C A 3 155.982 152.004 278.916 1.00 0.00 O ATOM 4 O5' C A 3 157.308 151.004 280.775 1.00 0.00 O ATOM 5 C5' C A 3 156.890 149.748 281.396 1.00 0.00 C ATOM 6 C4' C A 3 156.811 148.656 280.357 1.00 0.00 C ==> SEQ1.build_model_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:43 2026 ATOM 1 P C A 3 156.219 152.112 280.384 1.00 0.00 P ATOM 2 OP1 C A 3 156.677 153.424 280.924 1.00 0.00 O ATOM 3 OP2 C A 3 155.982 152.004 278.916 1.00 0.00 O ATOM 4 O5' C A 3 157.308 151.004 280.775 1.00 0.00 O ATOM 5 C5' C A 3 156.890 149.748 281.396 1.00 0.00 C ATOM 6 C4' C A 3 156.811 148.656 280.357 1.00 0.00 C ==> SEQ1.build_model_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:43 2026 ATOM 1 P C A 3 156.219 152.112 280.384 1.00 0.00 P ATOM 2 OP1 C A 3 156.677 153.424 280.924 1.00 0.00 O ATOM 3 OP2 C A 3 155.982 152.004 278.916 1.00 0.00 O ATOM 4 O5' C A 3 157.308 151.004 280.775 1.00 0.00 O ATOM 5 C5' C A 3 156.890 149.748 281.396 1.00 0.00 C ATOM 6 C4' C A 3 156.811 148.656 280.357 1.00 0.00 C ==> SEQ1.build_model_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:44 2026 ATOM 1 P C A 3 156.219 152.112 280.384 1.00 0.00 P ATOM 2 OP1 C A 3 156.677 153.424 280.924 1.00 0.00 O ATOM 3 OP2 C A 3 155.982 152.004 278.916 1.00 0.00 O ATOM 4 O5' C A 3 157.308 151.004 280.775 1.00 0.00 O ATOM 5 C5' C A 3 156.890 149.748 281.396 1.00 0.00 C ATOM 6 C4' C A 3 156.811 148.656 280.357 1.00 0.00 C ==> SEQ1.build_model_rpr_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:44 2026 ATOM 1 P C A 3 156.219 152.112 280.384 1.00 0.00 P ATOM 2 OP1 C A 3 156.677 153.424 280.924 1.00 0.00 O ATOM 3 OP2 C A 3 155.982 152.004 278.916 1.00 0.00 O ATOM 4 O5' C A 3 157.308 151.004 280.775 1.00 0.00 O ATOM 5 C5' C A 3 156.890 149.748 281.396 1.00 0.00 C ATOM 6 C4' C A 3 156.811 148.656 280.357 1.00 0.00 C ==> SEQ1.build_model_rpr_rpr_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:45 2026 ATOM 1 P C A 3 156.219 152.112 280.384 1.00 0.00 P ATOM 2 OP1 C A 3 156.677 153.424 280.924 1.00 0.00 O ATOM 3 OP2 C A 3 155.982 152.004 278.916 1.00 0.00 O ATOM 4 O5' C A 3 157.308 151.004 280.775 1.00 0.00 O ATOM 5 C5' C A 3 156.890 149.748 281.396 1.00 0.00 C ATOM 6 C4' C A 3 156.811 148.656 280.357 1.00 0.00 C ==> SEQ1.build_model_rpr_rpr_rpr_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:45 2026 ATOM 1 P C A 3 156.219 152.112 280.384 1.00 0.00 P ATOM 2 OP1 C A 3 156.677 153.424 280.924 1.00 0.00 O ATOM 3 OP2 C A 3 155.982 152.004 278.916 1.00 0.00 O ATOM 4 O5' C A 3 157.308 151.004 280.775 1.00 0.00 O ATOM 5 C5' C A 3 156.890 149.748 281.396 1.00 0.00 C ATOM 6 C4' C A 3 156.811 148.656 280.357 1.00 0.00 C ==> seq1_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:46 2026 REMARK 250 Fixed atoms/residues: REMARK 250 - add OP3 at the beginning of the chain in chain: A residue # 1 ATOM 1 P C A 1 -0.482 0.305 -2.084 1.00 11.89 P ATOM 2 OP1 C A 1 0.170 -0.727 -2.926 1.00 14.35 O ATOM 3 OP2 C A 1 -1.948 0.421 -2.044 1.00 12.68 O ATOM 4 O5' C A 1 -0.009 0.182 -0.573 1.00 10.34 O ==> seq1_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:46 2026 ATOM 1 P C A 1 -0.482 0.305 -2.084 1.00 11.89 P ATOM 2 OP1 C A 1 0.170 -0.727 -2.926 1.00 14.35 O ATOM 3 OP2 C A 1 -1.948 0.421 -2.044 1.00 12.68 O ATOM 4 O5' C A 1 -0.009 0.182 -0.573 1.00 10.34 O ATOM 5 C5' C A 1 1.425 0.087 -0.269 1.00 0.00 C ATOM 6 C4' C A 1 1.563 0.104 1.237 1.00 0.00 C ==> seq1_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:47 2026 ATOM 1 P C A 1 -0.482 0.305 -2.084 1.00 11.89 P ATOM 2 OP1 C A 1 0.170 -0.727 -2.926 1.00 14.35 O ATOM 3 OP2 C A 1 -1.948 0.421 -2.044 1.00 12.68 O ATOM 4 O5' C A 1 -0.009 0.182 -0.573 1.00 10.34 O ATOM 5 C5' C A 1 1.425 0.087 -0.269 1.00 0.00 C ATOM 6 C4' C A 1 1.563 0.104 1.237 1.00 0.00 C ==> seq1_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:47 2026 ATOM 1 P C A 1 -0.482 0.305 -2.084 1.00 11.89 P ATOM 2 OP1 C A 1 0.170 -0.727 -2.926 1.00 14.35 O ATOM 3 OP2 C A 1 -1.948 0.421 -2.044 1.00 12.68 O ATOM 4 O5' C A 1 -0.009 0.182 -0.573 1.00 10.34 O ATOM 5 C5' C A 1 1.425 0.087 -0.269 1.00 0.00 C ATOM 6 C4' C A 1 1.563 0.104 1.237 1.00 0.00 C ==> seq1_rpr_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:48 2026 ATOM 1 P C A 1 -0.482 0.305 -2.084 1.00 11.89 P ATOM 2 OP1 C A 1 0.170 -0.727 -2.926 1.00 14.35 O ATOM 3 OP2 C A 1 -1.948 0.421 -2.044 1.00 12.68 O ATOM 4 O5' C A 1 -0.009 0.182 -0.573 1.00 10.34 O ATOM 5 C5' C A 1 1.425 0.087 -0.269 1.00 0.00 C ATOM 6 C4' C A 1 1.563 0.104 1.237 1.00 0.00 C ==> seq1_rpr_rpr_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:48 2026 ATOM 1 P C A 1 -0.482 0.305 -2.084 1.00 11.89 P ATOM 2 OP1 C A 1 0.170 -0.727 -2.926 1.00 14.35 O ATOM 3 OP2 C A 1 -1.948 0.421 -2.044 1.00 12.68 O ATOM 4 O5' C A 1 -0.009 0.182 -0.573 1.00 10.34 O ATOM 5 C5' C A 1 1.425 0.087 -0.269 1.00 0.00 C ATOM 6 C4' C A 1 1.563 0.104 1.237 1.00 0.00 C ==> seq1_rpr_rpr_rpr_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:49 2026 ATOM 1 P C A 1 -0.482 0.305 -2.084 1.00 11.89 P ATOM 2 OP1 C A 1 0.170 -0.727 -2.926 1.00 14.35 O ATOM 3 OP2 C A 1 -1.948 0.421 -2.044 1.00 12.68 O ATOM 4 O5' C A 1 -0.009 0.182 -0.573 1.00 10.34 O ATOM 5 C5' C A 1 1.425 0.087 -0.269 1.00 0.00 C ATOM 6 C4' C A 1 1.563 0.104 1.237 1.00 0.00 C ==> seq2_RNAFold_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:50 2026 REMARK 250 Fixed atoms/residues: REMARK 250 - add OP3 at the beginning of the chain in chain: A residue # 1 ATOM 1 P G A 1 3.710 -0.640 -2.133 1.00 11.89 P ATOM 2 OP1 G A 1 3.636 0.638 -2.881 1.00 14.35 O ATOM 3 OP2 G A 1 4.968 -1.402 -2.076 1.00 12.68 O ATOM 4 O5' G A 1 3.250 -0.440 -0.626 1.00 10.34 O ==> seq2_RNAFold_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:50 2026 ATOM 1 P G A 1 3.710 -0.640 -2.133 1.00 11.89 P ATOM 2 OP1 G A 1 3.636 0.638 -2.881 1.00 14.35 O ATOM 3 OP2 G A 1 4.968 -1.402 -2.076 1.00 12.68 O ATOM 4 O5' G A 1 3.250 -0.440 -0.626 1.00 10.34 O ATOM 5 C5' G A 1 1.990 0.264 -0.341 1.00 0.00 C ATOM 6 C4' G A 1 1.767 0.190 1.151 1.00 0.00 C ==> seq2_RNAFold_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:51 2026 ATOM 1 P G A 1 3.710 -0.640 -2.133 1.00 11.89 P ATOM 2 OP1 G A 1 3.636 0.638 -2.881 1.00 14.35 O ATOM 3 OP2 G A 1 4.968 -1.402 -2.076 1.00 12.68 O ATOM 4 O5' G A 1 3.250 -0.440 -0.626 1.00 10.34 O ATOM 5 C5' G A 1 1.990 0.264 -0.341 1.00 0.00 C ATOM 6 C4' G A 1 1.767 0.190 1.151 1.00 0.00 C ==> seq2_RNAFold_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:51 2026 ATOM 1 P G A 1 3.710 -0.640 -2.133 1.00 11.89 P ATOM 2 OP1 G A 1 3.636 0.638 -2.881 1.00 14.35 O ATOM 3 OP2 G A 1 4.968 -1.402 -2.076 1.00 12.68 O ATOM 4 O5' G A 1 3.250 -0.440 -0.626 1.00 10.34 O ATOM 5 C5' G A 1 1.990 0.264 -0.341 1.00 0.00 C ATOM 6 C4' G A 1 1.767 0.190 1.151 1.00 0.00 C ==> seq2_eterna_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:52 2026 REMARK 250 Fixed atoms/residues: REMARK 250 - add OP3 at the beginning of the chain in chain: A residue # 1 ATOM 1 P G A 1 3.741 -0.982 -1.831 1.00 11.89 P ATOM 2 OP1 G A 1 3.727 0.263 -2.636 1.00 14.35 O ATOM 3 OP2 G A 1 4.971 -1.781 -1.711 1.00 12.68 O ATOM 4 O5' G A 1 3.254 -0.700 -0.346 1.00 10.34 O ==> seq2_konsensus_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:53 2026 REMARK 250 Fixed atoms/residues: REMARK 250 - add OP3 at the beginning of the chain in chain: A residue # 1 ATOM 1 P G A 1 3.818 -0.260 -1.907 1.00 11.89 P ATOM 2 OP1 G A 1 3.797 1.067 -2.570 1.00 14.35 O ATOM 3 OP2 G A 1 5.064 -1.040 -1.835 1.00 12.68 O ATOM 4 O5' G A 1 3.278 -0.156 -0.418 1.00 10.34 O ==> seq2_konsensus_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:53 2026 ATOM 1 P G A 1 3.818 -0.260 -1.907 1.00 11.89 P ATOM 2 OP1 G A 1 3.797 1.067 -2.570 1.00 14.35 O ATOM 3 OP2 G A 1 5.064 -1.040 -1.835 1.00 12.68 O ATOM 4 O5' G A 1 3.278 -0.156 -0.418 1.00 10.34 O ATOM 5 C5' G A 1 2.013 0.541 -0.154 1.00 0.00 C ATOM 6 C4' G A 1 1.707 0.370 1.317 1.00 0.00 C ==> seq2_konsensus_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:54 2026 ATOM 1 P G A 1 3.818 -0.260 -1.907 1.00 11.89 P ATOM 2 OP1 G A 1 3.797 1.067 -2.570 1.00 14.35 O ATOM 3 OP2 G A 1 5.064 -1.040 -1.835 1.00 12.68 O ATOM 4 O5' G A 1 3.278 -0.156 -0.418 1.00 10.34 O ATOM 5 C5' G A 1 2.013 0.541 -0.154 1.00 0.00 C ATOM 6 C4' G A 1 1.707 0.370 1.317 1.00 0.00 C ==> seq2_konsensus_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:54 2026 ATOM 1 P G A 1 3.818 -0.260 -1.907 1.00 11.89 P ATOM 2 OP1 G A 1 3.797 1.067 -2.570 1.00 14.35 O ATOM 3 OP2 G A 1 5.064 -1.040 -1.835 1.00 12.68 O ATOM 4 O5' G A 1 3.278 -0.156 -0.418 1.00 10.34 O ATOM 5 C5' G A 1 2.013 0.541 -0.154 1.00 0.00 C ATOM 6 C4' G A 1 1.707 0.370 1.317 1.00 0.00 C ==> seq2_konsensus_rpr_rpr_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:55 2026 ATOM 1 P G A 1 3.818 -0.260 -1.907 1.00 11.89 P ATOM 2 OP1 G A 1 3.797 1.067 -2.570 1.00 14.35 O ATOM 3 OP2 G A 1 5.064 -1.040 -1.835 1.00 12.68 O ATOM 4 O5' G A 1 3.278 -0.156 -0.418 1.00 10.34 O ATOM 5 C5' G A 1 2.013 0.541 -0.154 1.00 0.00 C ATOM 6 C4' G A 1 1.707 0.370 1.317 1.00 0.00 C ==> seq3_consensus_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:57 2026 REMARK 250 Fixed atoms/residues: REMARK 250 - add OP3 at the beginning of the chain in chain: A residue # 1 ATOM 1 P C A 1 -0.800 0.372 -1.937 1.00 11.89 P ATOM 2 OP1 C A 1 -0.220 -0.669 -2.821 1.00 14.35 O ATOM 3 OP2 C A 1 -2.259 0.494 -1.784 1.00 12.68 O ATOM 4 O5' C A 1 -0.212 0.256 -0.467 1.00 10.34 O ==> seq3_consensus_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:58 2026 ATOM 1 P C A 1 -0.800 0.372 -1.937 1.00 11.89 P ATOM 2 OP1 C A 1 -0.220 -0.669 -2.821 1.00 14.35 O ATOM 3 OP2 C A 1 -2.259 0.494 -1.784 1.00 12.68 O ATOM 4 O5' C A 1 -0.212 0.256 -0.467 1.00 10.34 O ATOM 5 C5' C A 1 1.246 0.155 -0.276 1.00 0.00 C ATOM 6 C4' C A 1 1.498 0.182 1.214 1.00 0.00 C ==> seq3_consensus_rpr_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:58 2026 ATOM 1 P C A 1 -0.800 0.372 -1.937 1.00 11.89 P ATOM 2 OP1 C A 1 -0.220 -0.669 -2.821 1.00 14.35 O ATOM 3 OP2 C A 1 -2.259 0.494 -1.784 1.00 12.68 O ATOM 4 O5' C A 1 -0.212 0.256 -0.467 1.00 10.34 O ATOM 5 C5' C A 1 1.246 0.155 -0.276 1.00 0.00 C ATOM 6 C4' C A 1 1.498 0.182 1.214 1.00 0.00 C ==> seq3_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:56 2026 REMARK 250 Fixed atoms/residues: REMARK 250 - add OP3 at the beginning of the chain in chain: A residue # 1 ATOM 1 P C A 1 0.571 -0.621 -1.651 1.00 11.89 P ATOM 2 OP1 C A 1 1.742 -0.687 -2.558 1.00 14.35 O ATOM 3 OP2 C A 1 -0.576 -1.524 -1.845 1.00 12.68 O ATOM 4 O5' C A 1 1.017 -0.797 -0.137 1.00 10.34 O ==> seq3_rpr_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 16:27:59 2026 ATOM 1 P C A 1 0.571 -0.621 -1.651 1.00 11.89 P ATOM 2 OP1 C A 1 1.742 -0.687 -2.558 1.00 14.35 O ATOM 3 OP2 C A 1 -0.576 -1.524 -1.845 1.00 12.68 O ATOM 4 O5' C A 1 1.017 -0.797 -0.137 1.00 10.34 O ATOM 5 C5' C A 1 2.128 0.007 0.384 1.00 0.00 C ATOM 6 C4' C A 1 2.241 -0.289 1.862 1.00 0.00 C DONE!