============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext.pdb ============================================================================= Atom's 1 H5T residue renamed to RC5 Atom's 2 O5' residue renamed to RC5 Atom's 3 C5' residue renamed to RC5 Atom's 4 H5'1 residue renamed to RC5 Atom's 5 H5'2 residue renamed to RC5 Atom's 6 C4' residue renamed to RC5 Atom's 7 H4' residue renamed to RC5 Atom's 8 O4' residue renamed to RC5 Atom's 9 C1' residue renamed to RC5 Atom's 10 H1' residue renamed to RC5 Atom's 11 N1 residue renamed to RC5 Atom's 12 C6 residue renamed to RC5 Atom's 13 H6 residue renamed to RC5 Atom's 14 C2 residue renamed to RC5 Atom's 15 O2 residue renamed to RC5 Atom's 16 N3 residue renamed to RC5 Atom's 17 C4 residue renamed to RC5 Atom's 18 N4 residue renamed to RC5 Atom's 19 H41 residue renamed to RC5 Atom's 20 H42 residue renamed to RC5 Atom's 21 C5 residue renamed to RC5 Atom's 22 H5 residue renamed to RC5 Atom's 23 C2' residue renamed to RC5 Atom's 24 H2' residue renamed to RC5 Atom's 25 O2' residue renamed to RC5 Atom's 26 HO'2 residue renamed to RC5 Atom's 27 C3' residue renamed to RC5 Atom's 28 H3' residue renamed to RC5 Atom's 29 O3' residue renamed to RC5 Atom's 2821 H3T residue renamed to RG3 Atom's 2820 O3' residue renamed to RG3 Atom's 2819 C3' residue renamed to RG3 Atom's 2818 H3' residue renamed to RG3 Atom's 2817 HO'2 residue renamed to RG3 Atom's 2816 O2' residue renamed to RG3 Atom's 2815 H2' residue renamed to RG3 Atom's 2814 C2' residue renamed to RG3 Atom's 2813 H8 residue renamed to RG3 Atom's 2812 C8 residue renamed to RG3 Atom's 2811 N7 residue renamed to RG3 Atom's 2810 C5 residue renamed to RG3 Atom's 2809 O6 residue renamed to RG3 Atom's 2808 C6 residue renamed to RG3 Atom's 2807 H1 residue renamed to RG3 Atom's 2806 N1 residue renamed to RG3 Atom's 2805 H22 residue renamed to RG3 Atom's 2804 H21 residue renamed to RG3 Atom's 2803 N2 residue renamed to RG3 Atom's 2802 C2 residue renamed to RG3 Atom's 2801 N3 residue renamed to RG3 Atom's 2800 C4 residue renamed to RG3 Atom's 2799 N9 residue renamed to RG3 Atom's 2798 H1' residue renamed to RG3 Atom's 2797 C1' residue renamed to RG3 Atom's 2796 O4' residue renamed to RG3 Atom's 2795 H4' residue renamed to RG3 Atom's 2794 C4' residue renamed to RG3 Atom's 2793 H5'2 residue renamed to RG3 Atom's 2792 H5'1 residue renamed to RG3 Atom's 2791 C5' residue renamed to RG3 Atom's 2790 O5' residue renamed to RG3 Atom's 2789 OP2 residue renamed to RG3 Atom's 2788 OP1 residue renamed to RG3 Atom's 2787 P residue renamed to RG3 Number of atoms: 2821 Number of residues: 88 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 3039 Number of angles built: 5433 Number of dihedrals built: 8266 Number of impropers built: 595 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3969138 Number of van der Waals pairs: 322026 Number of H-bonds built: 88 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 27 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 4.628e+04 kcal/mol (4.627e+04 without restraints) Performing minimization step: 2. Total energy = 4.623e+04 kcal/mol (4.621e+04 without restraints) Performing minimization step: 3. Total energy = 4.617e+04 kcal/mol (4.616e+04 without restraints) Performing minimization step: 4. Total energy = 4.611e+04 kcal/mol (4.61e+04 without restraints) Performing minimization step: 5. Total energy = 4.606e+04 kcal/mol (4.604e+04 without restraints) Performing minimization step: 6. Total energy = 4.6e+04 kcal/mol (4.599e+04 without restraints) Performing minimization step: 7. Total energy = 4.594e+04 kcal/mol (4.593e+04 without restraints) Performing minimization step: 8. Total energy = 4.589e+04 kcal/mol (4.587e+04 without restraints) Performing minimization step: 9. Total energy = 4.583e+04 kcal/mol (4.582e+04 without restraints) Performing minimization step: 10. Total energy = 4.577e+04 kcal/mol (4.576e+04 without restraints) Performing minimization step: 11. Total energy = 4.572e+04 kcal/mol (4.57e+04 without restraints) Performing minimization step: 12. Total energy = 4.566e+04 kcal/mol (4.565e+04 without restraints) Performing minimization step: 13. Total energy = 4.561e+04 kcal/mol (4.559e+04 without restraints) Performing minimization step: 14. Total energy = 4.555e+04 kcal/mol (4.554e+04 without restraints) Performing minimization step: 15. Total energy = 4.549e+04 kcal/mol (4.548e+04 without restraints) Performing minimization step: 16. Total energy = 4.544e+04 kcal/mol (4.543e+04 without restraints) Performing minimization step: 17. Total energy = 4.538e+04 kcal/mol (4.537e+04 without restraints) Performing minimization step: 18. Total energy = 4.533e+04 kcal/mol (4.531e+04 without restraints) Performing minimization step: 19. Total energy = 4.527e+04 kcal/mol (4.526e+04 without restraints) Performing minimization step: 20. Total energy = 4.522e+04 kcal/mol (4.52e+04 without restraints) Performing minimization step: 21. Total energy = 4.516e+04 kcal/mol (4.515e+04 without restraints) Performing minimization step: 22. Total energy = 4.511e+04 kcal/mol (4.509e+04 without restraints) Performing minimization step: 23. Total energy = 4.505e+04 kcal/mol (4.504e+04 without restraints) Performing minimization step: 24. Total energy = 4.5e+04 kcal/mol (4.498e+04 without restraints) Performing minimization step: 25. Total energy = 4.494e+04 kcal/mol (4.493e+04 without restraints) Performing minimization step: 26. Total energy = 4.489e+04 kcal/mol (4.487e+04 without restraints) Performing minimization step: 27. Total energy = 4.483e+04 kcal/mol (4.482e+04 without restraints) Performing minimization step: 28. Total energy = 4.478e+04 kcal/mol (4.477e+04 without restraints) Performing minimization step: 29. Total energy = 4.472e+04 kcal/mol (4.471e+04 without restraints) Performing minimization step: 30. Total energy = 4.467e+04 kcal/mol (4.466e+04 without restraints) Performing minimization step: 31. Total energy = 4.462e+04 kcal/mol (4.46e+04 without restraints) Performing minimization step: 32. Total energy = 4.456e+04 kcal/mol (4.455e+04 without restraints) Performing minimization step: 33. Total energy = 4.451e+04 kcal/mol (4.449e+04 without restraints) Performing minimization step: 34. Total energy = 4.445e+04 kcal/mol (4.444e+04 without restraints) Performing minimization step: 35. Total energy = 4.44e+04 kcal/mol (4.439e+04 without restraints) Performing minimization step: 36. Total energy = 4.434e+04 kcal/mol (4.433e+04 without restraints) Performing minimization step: 37. Total energy = 4.429e+04 kcal/mol (4.428e+04 without restraints) Performing minimization step: 38. Total energy = 4.424e+04 kcal/mol (4.422e+04 without restraints) Performing minimization step: 39. Total energy = 4.418e+04 kcal/mol (4.417e+04 without restraints) Performing minimization step: 40. Total energy = 4.413e+04 kcal/mol (4.412e+04 without restraints) Performing minimization step: 41. Total energy = 4.408e+04 kcal/mol (4.406e+04 without restraints) Performing minimization step: 42. Total energy = 4.402e+04 kcal/mol (4.401e+04 without restraints) Performing minimization step: 43. Total energy = 4.397e+04 kcal/mol (4.395e+04 without restraints) Performing minimization step: 44. Total energy = 4.391e+04 kcal/mol (4.39e+04 without restraints) Performing minimization step: 45. Total energy = 4.386e+04 kcal/mol (4.385e+04 without restraints) Performing minimization step: 46. Total energy = 4.381e+04 kcal/mol (4.379e+04 without restraints) Performing minimization step: 47. Total energy = 4.375e+04 kcal/mol (4.374e+04 without restraints) Performing minimization step: 48. Total energy = 4.37e+04 kcal/mol (4.369e+04 without restraints) Performing minimization step: 49. Total energy = 4.365e+04 kcal/mol (4.364e+04 without restraints) Performing minimization step: 50. Total energy = 4.36e+04 kcal/mol (4.358e+04 without restraints) Performing minimization step: 51. Total energy = 4.354e+04 kcal/mol (4.353e+04 without restraints) Performing minimization step: 52. Total energy = 4.349e+04 kcal/mol (4.348e+04 without restraints) Performing minimization step: 53. Total energy = 4.344e+04 kcal/mol (4.342e+04 without restraints) Performing minimization step: 54. Total energy = 4.338e+04 kcal/mol (4.337e+04 without restraints) Performing minimization step: 55. Total energy = 4.333e+04 kcal/mol (4.332e+04 without restraints) Performing minimization step: 56. Total energy = 4.328e+04 kcal/mol (4.327e+04 without restraints) Performing minimization step: 57. Total energy = 4.323e+04 kcal/mol (4.321e+04 without restraints) Performing minimization step: 58. Total energy = 4.317e+04 kcal/mol (4.316e+04 without restraints) Performing minimization step: 59. Total energy = 4.312e+04 kcal/mol (4.311e+04 without restraints) Performing minimization step: 60. Total energy = 4.307e+04 kcal/mol (4.306e+04 without restraints) Performing minimization step: 61. Total energy = 4.302e+04 kcal/mol (4.3e+04 without restraints) Performing minimization step: 62. Total energy = 4.296e+04 kcal/mol (4.295e+04 without restraints) Performing minimization step: 63. Total energy = 4.291e+04 kcal/mol (4.29e+04 without restraints) Performing minimization step: 64. Total energy = 4.286e+04 kcal/mol (4.285e+04 without restraints) Performing minimization step: 65. Total energy = 4.281e+04 kcal/mol (4.279e+04 without restraints) Performing minimization step: 66. Total energy = 4.276e+04 kcal/mol (4.274e+04 without restraints) Performing minimization step: 67. Total energy = 4.27e+04 kcal/mol (4.269e+04 without restraints) Performing minimization step: 68. Total energy = 4.265e+04 kcal/mol (4.264e+04 without restraints) Performing minimization step: 69. Total energy = 4.26e+04 kcal/mol (4.259e+04 without restraints) Performing minimization step: 70. Total energy = 4.255e+04 kcal/mol (4.253e+04 without restraints) Performing minimization step: 71. Total energy = 4.25e+04 kcal/mol (4.248e+04 without restraints) Performing minimization step: 72. Total energy = 4.244e+04 kcal/mol (4.243e+04 without restraints) Performing minimization step: 73. Total energy = 4.239e+04 kcal/mol (4.238e+04 without restraints) Performing minimization step: 74. Total energy = 4.234e+04 kcal/mol (4.233e+04 without restraints) Performing minimization step: 75. Total energy = 4.229e+04 kcal/mol (4.228e+04 without restraints) Performing minimization step: 76. Total energy = 4.224e+04 kcal/mol (4.223e+04 without restraints) Performing minimization step: 77. Total energy = 4.219e+04 kcal/mol (4.217e+04 without restraints) Performing minimization step: 78. Total energy = 4.214e+04 kcal/mol (4.212e+04 without restraints) Performing minimization step: 79. Total energy = 4.208e+04 kcal/mol (4.207e+04 without restraints) Performing minimization step: 80. Total energy = 4.203e+04 kcal/mol (4.202e+04 without restraints) Performing minimization step: 81. Total energy = 4.198e+04 kcal/mol (4.197e+04 without restraints) Performing minimization step: 82. Total energy = 4.193e+04 kcal/mol (4.192e+04 without restraints) Performing minimization step: 83. Total energy = 4.188e+04 kcal/mol (4.187e+04 without restraints) Performing minimization step: 84. Total energy = 4.183e+04 kcal/mol (4.182e+04 without restraints) Performing minimization step: 85. Total energy = 4.178e+04 kcal/mol (4.177e+04 without restraints) Performing minimization step: 86. Total energy = 4.173e+04 kcal/mol (4.171e+04 without restraints) Performing minimization step: 87. Total energy = 4.168e+04 kcal/mol (4.166e+04 without restraints) Performing minimization step: 88. Total energy = 4.163e+04 kcal/mol (4.161e+04 without restraints) Performing minimization step: 89. Total energy = 4.158e+04 kcal/mol (4.156e+04 without restraints) Performing minimization step: 90. Total energy = 4.152e+04 kcal/mol (4.151e+04 without restraints) Performing minimization step: 91. Total energy = 4.147e+04 kcal/mol (4.146e+04 without restraints) Performing minimization step: 92. Total energy = 4.142e+04 kcal/mol (4.141e+04 without restraints) Performing minimization step: 93. Total energy = 4.137e+04 kcal/mol (4.136e+04 without restraints) Performing minimization step: 94. Total energy = 4.132e+04 kcal/mol (4.131e+04 without restraints) Performing minimization step: 95. Total energy = 4.127e+04 kcal/mol (4.126e+04 without restraints) Performing minimization step: 96. Total energy = 4.122e+04 kcal/mol (4.121e+04 without restraints) Performing minimization step: 97. Total energy = 4.117e+04 kcal/mol (4.116e+04 without restraints) Performing minimization step: 98. Total energy = 4.112e+04 kcal/mol (4.111e+04 without restraints) Performing minimization step: 99. Total energy = 4.107e+04 kcal/mol (4.106e+04 without restraints) Performing minimization step: 100. Total energy = 4.102e+04 kcal/mol (4.101e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 101. Total energy = 4.097e+04 kcal/mol (4.096e+04 without restraints) Performing minimization step: 102. Total energy = 4.092e+04 kcal/mol (4.091e+04 without restraints) Performing minimization step: 103. Total energy = 4.087e+04 kcal/mol (4.086e+04 without restraints) Performing minimization step: 104. Total energy = 4.082e+04 kcal/mol (4.081e+04 without restraints) Performing minimization step: 105. Total energy = 4.077e+04 kcal/mol (4.076e+04 without restraints) Performing minimization step: 106. Total energy = 4.072e+04 kcal/mol (4.071e+04 without restraints) Performing minimization step: 107. Total energy = 4.067e+04 kcal/mol (4.066e+04 without restraints) Performing minimization step: 108. Total energy = 4.062e+04 kcal/mol (4.061e+04 without restraints) Performing minimization step: 109. Total energy = 4.058e+04 kcal/mol (4.056e+04 without restraints) Performing minimization step: 110. Total energy = 4.053e+04 kcal/mol (4.051e+04 without restraints) Performing minimization step: 111. Total energy = 4.048e+04 kcal/mol (4.046e+04 without restraints) Performing minimization step: 112. Total energy = 4.043e+04 kcal/mol (4.041e+04 without restraints) Performing minimization step: 113. Total energy = 4.038e+04 kcal/mol (4.037e+04 without restraints) Performing minimization step: 114. Total energy = 4.033e+04 kcal/mol (4.032e+04 without restraints) Performing minimization step: 115. Total energy = 4.028e+04 kcal/mol (4.027e+04 without restraints) Performing minimization step: 116. Total energy = 4.023e+04 kcal/mol (4.022e+04 without restraints) Performing minimization step: 117. Total energy = 4.018e+04 kcal/mol (4.017e+04 without restraints) Performing minimization step: 118. Total energy = 4.013e+04 kcal/mol (4.012e+04 without restraints) Performing minimization step: 119. Total energy = 4.008e+04 kcal/mol (4.007e+04 without restraints) Performing minimization step: 120. Total energy = 4.004e+04 kcal/mol (4.002e+04 without restraints) Performing minimization step: 121. Total energy = 3.999e+04 kcal/mol (3.997e+04 without restraints) Performing minimization step: 122. Total energy = 3.994e+04 kcal/mol (3.993e+04 without restraints) Performing minimization step: 123. Total energy = 3.989e+04 kcal/mol (3.988e+04 without restraints) Performing minimization step: 124. Total energy = 3.984e+04 kcal/mol (3.983e+04 without restraints) Performing minimization step: 125. Total energy = 3.979e+04 kcal/mol (3.978e+04 without restraints) Performing minimization step: 126. Total energy = 3.974e+04 kcal/mol (3.973e+04 without restraints) Performing minimization step: 127. Total energy = 3.97e+04 kcal/mol (3.968e+04 without restraints) Performing minimization step: 128. Total energy = 3.965e+04 kcal/mol (3.963e+04 without restraints) Performing minimization step: 129. Total energy = 3.96e+04 kcal/mol (3.959e+04 without restraints) Performing minimization step: 130. Total energy = 3.955e+04 kcal/mol (3.954e+04 without restraints) Performing minimization step: 131. Total energy = 3.95e+04 kcal/mol (3.949e+04 without restraints) Performing minimization step: 132. Total energy = 3.945e+04 kcal/mol (3.944e+04 without restraints) Performing minimization step: 133. Total energy = 3.941e+04 kcal/mol (3.939e+04 without restraints) Performing minimization step: 134. Total energy = 3.936e+04 kcal/mol (3.935e+04 without restraints) Performing minimization step: 135. Total energy = 3.931e+04 kcal/mol (3.93e+04 without restraints) Performing minimization step: 136. Total energy = 3.926e+04 kcal/mol (3.925e+04 without restraints) Performing minimization step: 137. Total energy = 3.921e+04 kcal/mol (3.92e+04 without restraints) Performing minimization step: 138. Total energy = 3.917e+04 kcal/mol (3.915e+04 without restraints) Performing minimization step: 139. Total energy = 3.912e+04 kcal/mol (3.911e+04 without restraints) Performing minimization step: 140. Total energy = 3.907e+04 kcal/mol (3.906e+04 without restraints) Performing minimization step: 141. Total energy = 3.902e+04 kcal/mol (3.901e+04 without restraints) Performing minimization step: 142. Total energy = 3.898e+04 kcal/mol (3.896e+04 without restraints) Performing minimization step: 143. Total energy = 3.893e+04 kcal/mol (3.892e+04 without restraints) Performing minimization step: 144. Total energy = 3.888e+04 kcal/mol (3.887e+04 without restraints) Performing minimization step: 145. Total energy = 3.883e+04 kcal/mol (3.882e+04 without restraints) Performing minimization step: 146. Total energy = 3.879e+04 kcal/mol (3.877e+04 without restraints) Performing minimization step: 147. Total energy = 3.874e+04 kcal/mol (3.873e+04 without restraints) Performing minimization step: 148. Total energy = 3.869e+04 kcal/mol (3.868e+04 without restraints) Performing minimization step: 149. Total energy = 3.864e+04 kcal/mol (3.863e+04 without restraints) Performing minimization step: 150. Total energy = 3.86e+04 kcal/mol (3.858e+04 without restraints) Performing minimization step: 151. Total energy = 3.855e+04 kcal/mol (3.854e+04 without restraints) Performing minimization step: 152. Total energy = 3.85e+04 kcal/mol (3.849e+04 without restraints) Performing minimization step: 153. Total energy = 3.846e+04 kcal/mol (3.844e+04 without restraints) Performing minimization step: 154. Total energy = 3.841e+04 kcal/mol (3.84e+04 without restraints) Performing minimization step: 155. Total energy = 3.836e+04 kcal/mol (3.835e+04 without restraints) Performing minimization step: 156. Total energy = 3.832e+04 kcal/mol (3.83e+04 without restraints) Performing minimization step: 157. Total energy = 3.827e+04 kcal/mol (3.826e+04 without restraints) Performing minimization step: 158. Total energy = 3.822e+04 kcal/mol (3.821e+04 without restraints) Performing minimization step: 159. Total energy = 3.818e+04 kcal/mol (3.816e+04 without restraints) Performing minimization step: 160. Total energy = 3.813e+04 kcal/mol (3.812e+04 without restraints) Performing minimization step: 161. Total energy = 3.808e+04 kcal/mol (3.807e+04 without restraints) Performing minimization step: 162. Total energy = 3.804e+04 kcal/mol (3.802e+04 without restraints) Performing minimization step: 163. Total energy = 3.799e+04 kcal/mol (3.798e+04 without restraints) Performing minimization step: 164. Total energy = 3.794e+04 kcal/mol (3.793e+04 without restraints) Performing minimization step: 165. Total energy = 3.79e+04 kcal/mol (3.788e+04 without restraints) Performing minimization step: 166. Total energy = 3.785e+04 kcal/mol (3.784e+04 without restraints) Performing minimization step: 167. Total energy = 3.78e+04 kcal/mol (3.779e+04 without restraints) Performing minimization step: 168. Total energy = 3.776e+04 kcal/mol (3.775e+04 without restraints) Performing minimization step: 169. Total energy = 3.771e+04 kcal/mol (3.77e+04 without restraints) Performing minimization step: 170. Total energy = 3.767e+04 kcal/mol (3.765e+04 without restraints) Performing minimization step: 171. Total energy = 3.762e+04 kcal/mol (3.761e+04 without restraints) Performing minimization step: 172. Total energy = 3.757e+04 kcal/mol (3.756e+04 without restraints) Performing minimization step: 173. Total energy = 3.753e+04 kcal/mol (3.752e+04 without restraints) Performing minimization step: 174. Total energy = 3.748e+04 kcal/mol (3.747e+04 without restraints) Performing minimization step: 175. Total energy = 3.744e+04 kcal/mol (3.742e+04 without restraints) Performing minimization step: 176. Total energy = 3.739e+04 kcal/mol (3.738e+04 without restraints) Performing minimization step: 177. Total energy = 3.735e+04 kcal/mol (3.733e+04 without restraints) Performing minimization step: 178. Total energy = 3.73e+04 kcal/mol (3.729e+04 without restraints) Performing minimization step: 179. Total energy = 3.725e+04 kcal/mol (3.724e+04 without restraints) Performing minimization step: 180. Total energy = 3.721e+04 kcal/mol (3.72e+04 without restraints) Performing minimization step: 181. Total energy = 3.716e+04 kcal/mol (3.715e+04 without restraints) Performing minimization step: 182. Total energy = 3.712e+04 kcal/mol (3.711e+04 without restraints) Performing minimization step: 183. Total energy = 3.707e+04 kcal/mol (3.706e+04 without restraints) Performing minimization step: 184. Total energy = 3.703e+04 kcal/mol (3.701e+04 without restraints) Performing minimization step: 185. Total energy = 3.698e+04 kcal/mol (3.697e+04 without restraints) Performing minimization step: 186. Total energy = 3.694e+04 kcal/mol (3.692e+04 without restraints) Performing minimization step: 187. Total energy = 3.689e+04 kcal/mol (3.688e+04 without restraints) Performing minimization step: 188. Total energy = 3.685e+04 kcal/mol (3.683e+04 without restraints) Performing minimization step: 189. Total energy = 3.68e+04 kcal/mol (3.679e+04 without restraints) Performing minimization step: 190. Total energy = 3.676e+04 kcal/mol (3.674e+04 without restraints) Performing minimization step: 191. Total energy = 3.671e+04 kcal/mol (3.67e+04 without restraints) Performing minimization step: 192. Total energy = 3.667e+04 kcal/mol (3.665e+04 without restraints) Performing minimization step: 193. Total energy = 3.662e+04 kcal/mol (3.661e+04 without restraints) Performing minimization step: 194. Total energy = 3.658e+04 kcal/mol (3.656e+04 without restraints) Performing minimization step: 195. Total energy = 3.653e+04 kcal/mol (3.652e+04 without restraints) Performing minimization step: 196. Total energy = 3.649e+04 kcal/mol (3.648e+04 without restraints) Performing minimization step: 197. Total energy = 3.644e+04 kcal/mol (3.643e+04 without restraints) Performing minimization step: 198. Total energy = 3.64e+04 kcal/mol (3.639e+04 without restraints) Performing minimization step: 199. Total energy = 3.635e+04 kcal/mol (3.634e+04 without restraints) Performing minimization step: 200. Total energy = 3.631e+04 kcal/mol (3.63e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 201. Total energy = 3.626e+04 kcal/mol (3.625e+04 without restraints) Performing minimization step: 202. Total energy = 3.622e+04 kcal/mol (3.621e+04 without restraints) Performing minimization step: 203. Total energy = 3.618e+04 kcal/mol (3.616e+04 without restraints) Performing minimization step: 204. Total energy = 3.613e+04 kcal/mol (3.612e+04 without restraints) Performing minimization step: 205. Total energy = 3.609e+04 kcal/mol (3.608e+04 without restraints) Performing minimization step: 206. Total energy = 3.604e+04 kcal/mol (3.603e+04 without restraints) Performing minimization step: 207. Total energy = 3.6e+04 kcal/mol (3.599e+04 without restraints) Performing minimization step: 208. Total energy = 3.596e+04 kcal/mol (3.594e+04 without restraints) Performing minimization step: 209. Total energy = 3.591e+04 kcal/mol (3.59e+04 without restraints) Performing minimization step: 210. Total energy = 3.587e+04 kcal/mol (3.585e+04 without restraints) Performing minimization step: 211. Total energy = 3.582e+04 kcal/mol (3.581e+04 without restraints) Performing minimization step: 212. Total energy = 3.578e+04 kcal/mol (3.577e+04 without restraints) Performing minimization step: 213. Total energy = 3.574e+04 kcal/mol (3.572e+04 without restraints) Performing minimization step: 214. Total energy = 3.569e+04 kcal/mol (3.568e+04 without restraints) Performing minimization step: 215. Total energy = 3.565e+04 kcal/mol (3.564e+04 without restraints) Performing minimization step: 216. Total energy = 3.56e+04 kcal/mol (3.559e+04 without restraints) Performing minimization step: 217. Total energy = 3.556e+04 kcal/mol (3.555e+04 without restraints) Performing minimization step: 218. Total energy = 3.552e+04 kcal/mol (3.55e+04 without restraints) Performing minimization step: 219. Total energy = 3.547e+04 kcal/mol (3.546e+04 without restraints) Performing minimization step: 220. Total energy = 3.543e+04 kcal/mol (3.542e+04 without restraints) Performing minimization step: 221. Total energy = 3.539e+04 kcal/mol (3.537e+04 without restraints) Performing minimization step: 222. Total energy = 3.534e+04 kcal/mol (3.533e+04 without restraints) Performing minimization step: 223. Total energy = 3.53e+04 kcal/mol (3.529e+04 without restraints) Performing minimization step: 224. Total energy = 3.526e+04 kcal/mol (3.524e+04 without restraints) Performing minimization step: 225. Total energy = 3.521e+04 kcal/mol (3.52e+04 without restraints) Performing minimization step: 226. Total energy = 3.517e+04 kcal/mol (3.516e+04 without restraints) Performing minimization step: 227. Total energy = 3.513e+04 kcal/mol (3.511e+04 without restraints) Performing minimization step: 228. Total energy = 3.508e+04 kcal/mol (3.507e+04 without restraints) Performing minimization step: 229. Total energy = 3.504e+04 kcal/mol (3.503e+04 without restraints) Performing minimization step: 230. Total energy = 3.5e+04 kcal/mol (3.499e+04 without restraints) Performing minimization step: 231. Total energy = 3.495e+04 kcal/mol (3.494e+04 without restraints) Performing minimization step: 232. Total energy = 3.491e+04 kcal/mol (3.49e+04 without restraints) Performing minimization step: 233. Total energy = 3.487e+04 kcal/mol (3.486e+04 without restraints) Performing minimization step: 234. Total energy = 3.483e+04 kcal/mol (3.481e+04 without restraints) Performing minimization step: 235. Total energy = 3.478e+04 kcal/mol (3.477e+04 without restraints) Performing minimization step: 236. Total energy = 3.474e+04 kcal/mol (3.473e+04 without restraints) Performing minimization step: 237. Total energy = 3.47e+04 kcal/mol (3.469e+04 without restraints) Performing minimization step: 238. Total energy = 3.466e+04 kcal/mol (3.464e+04 without restraints) Performing minimization step: 239. Total energy = 3.461e+04 kcal/mol (3.46e+04 without restraints) Performing minimization step: 240. Total energy = 3.457e+04 kcal/mol (3.456e+04 without restraints) Performing minimization step: 241. Total energy = 3.453e+04 kcal/mol (3.452e+04 without restraints) Performing minimization step: 242. Total energy = 3.449e+04 kcal/mol (3.447e+04 without restraints) Performing minimization step: 243. Total energy = 3.444e+04 kcal/mol (3.443e+04 without restraints) Performing minimization step: 244. Total energy = 3.44e+04 kcal/mol (3.439e+04 without restraints) Performing minimization step: 245. Total energy = 3.436e+04 kcal/mol (3.435e+04 without restraints) Performing minimization step: 246. Total energy = 3.432e+04 kcal/mol (3.43e+04 without restraints) Performing minimization step: 247. Total energy = 3.427e+04 kcal/mol (3.426e+04 without restraints) Performing minimization step: 248. Total energy = 3.423e+04 kcal/mol (3.422e+04 without restraints) Performing minimization step: 249. Total energy = 3.419e+04 kcal/mol (3.418e+04 without restraints) Performing minimization step: 250. Total energy = 3.415e+04 kcal/mol (3.414e+04 without restraints) Performing minimization step: 251. Total energy = 3.41e+04 kcal/mol (3.409e+04 without restraints) Performing minimization step: 252. Total energy = 3.406e+04 kcal/mol (3.405e+04 without restraints) Performing minimization step: 253. Total energy = 3.402e+04 kcal/mol (3.401e+04 without restraints) Performing minimization step: 254. Total energy = 3.398e+04 kcal/mol (3.397e+04 without restraints) Performing minimization step: 255. Total energy = 3.394e+04 kcal/mol (3.393e+04 without restraints) Performing minimization step: 256. Total energy = 3.39e+04 kcal/mol (3.388e+04 without restraints) Performing minimization step: 257. Total energy = 3.385e+04 kcal/mol (3.384e+04 without restraints) Performing minimization step: 258. Total energy = 3.381e+04 kcal/mol (3.38e+04 without restraints) Performing minimization step: 259. Total energy = 3.377e+04 kcal/mol (3.376e+04 without restraints) Performing minimization step: 260. Total energy = 3.373e+04 kcal/mol (3.372e+04 without restraints) Performing minimization step: 261. Total energy = 3.369e+04 kcal/mol (3.367e+04 without restraints) Performing minimization step: 262. Total energy = 3.364e+04 kcal/mol (3.363e+04 without restraints) Performing minimization step: 263. Total energy = 3.36e+04 kcal/mol (3.359e+04 without restraints) Performing minimization step: 264. Total energy = 3.356e+04 kcal/mol (3.355e+04 without restraints) Performing minimization step: 265. Total energy = 3.352e+04 kcal/mol (3.351e+04 without restraints) Performing minimization step: 266. Total energy = 3.348e+04 kcal/mol (3.347e+04 without restraints) Performing minimization step: 267. Total energy = 3.344e+04 kcal/mol (3.343e+04 without restraints) Performing minimization step: 268. Total energy = 3.34e+04 kcal/mol (3.338e+04 without restraints) Performing minimization step: 269. Total energy = 3.335e+04 kcal/mol (3.334e+04 without restraints) Performing minimization step: 270. Total energy = 3.331e+04 kcal/mol (3.33e+04 without restraints) Performing minimization step: 271. Total energy = 3.327e+04 kcal/mol (3.326e+04 without restraints) Performing minimization step: 272. Total energy = 3.323e+04 kcal/mol (3.322e+04 without restraints) Performing minimization step: 273. Total energy = 3.319e+04 kcal/mol (3.318e+04 without restraints) Performing minimization step: 274. Total energy = 3.315e+04 kcal/mol (3.314e+04 without restraints) Performing minimization step: 275. Total energy = 3.311e+04 kcal/mol (3.309e+04 without restraints) Performing minimization step: 276. Total energy = 3.306e+04 kcal/mol (3.305e+04 without restraints) Performing minimization step: 277. Total energy = 3.302e+04 kcal/mol (3.301e+04 without restraints) Performing minimization step: 278. Total energy = 3.298e+04 kcal/mol (3.297e+04 without restraints) Performing minimization step: 279. Total energy = 3.294e+04 kcal/mol (3.293e+04 without restraints) Performing minimization step: 280. Total energy = 3.29e+04 kcal/mol (3.289e+04 without restraints) Performing minimization step: 281. Total energy = 3.286e+04 kcal/mol (3.285e+04 without restraints) Performing minimization step: 282. Total energy = 3.282e+04 kcal/mol (3.281e+04 without restraints) Performing minimization step: 283. Total energy = 3.278e+04 kcal/mol (3.276e+04 without restraints) Performing minimization step: 284. Total energy = 3.274e+04 kcal/mol (3.272e+04 without restraints) Performing minimization step: 285. Total energy = 3.269e+04 kcal/mol (3.268e+04 without restraints) Performing minimization step: 286. Total energy = 3.265e+04 kcal/mol (3.264e+04 without restraints) Performing minimization step: 287. Total energy = 3.261e+04 kcal/mol (3.26e+04 without restraints) Performing minimization step: 288. Total energy = 3.257e+04 kcal/mol (3.256e+04 without restraints) Performing minimization step: 289. Total energy = 3.253e+04 kcal/mol (3.252e+04 without restraints) Performing minimization step: 290. Total energy = 3.249e+04 kcal/mol (3.248e+04 without restraints) Performing minimization step: 291. Total energy = 3.245e+04 kcal/mol (3.244e+04 without restraints) Performing minimization step: 292. Total energy = 3.241e+04 kcal/mol (3.24e+04 without restraints) Performing minimization step: 293. Total energy = 3.237e+04 kcal/mol (3.236e+04 without restraints) Performing minimization step: 294. Total energy = 3.233e+04 kcal/mol (3.231e+04 without restraints) Performing minimization step: 295. Total energy = 3.229e+04 kcal/mol (3.227e+04 without restraints) Performing minimization step: 296. Total energy = 3.224e+04 kcal/mol (3.223e+04 without restraints) Performing minimization step: 297. Total energy = 3.22e+04 kcal/mol (3.219e+04 without restraints) Performing minimization step: 298. Total energy = 3.216e+04 kcal/mol (3.215e+04 without restraints) Performing minimization step: 299. Total energy = 3.212e+04 kcal/mol (3.211e+04 without restraints) Performing minimization step: 300. Total energy = 3.208e+04 kcal/mol (3.207e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 301. Total energy = 3.204e+04 kcal/mol (3.203e+04 without restraints) Performing minimization step: 302. Total energy = 3.2e+04 kcal/mol (3.199e+04 without restraints) Performing minimization step: 303. Total energy = 3.196e+04 kcal/mol (3.195e+04 without restraints) Performing minimization step: 304. Total energy = 3.192e+04 kcal/mol (3.191e+04 without restraints) Performing minimization step: 305. Total energy = 3.188e+04 kcal/mol (3.187e+04 without restraints) Performing minimization step: 306. Total energy = 3.184e+04 kcal/mol (3.183e+04 without restraints) Performing minimization step: 307. Total energy = 3.18e+04 kcal/mol (3.179e+04 without restraints) Performing minimization step: 308. Total energy = 3.176e+04 kcal/mol (3.174e+04 without restraints) Performing minimization step: 309. Total energy = 3.172e+04 kcal/mol (3.17e+04 without restraints) Performing minimization step: 310. Total energy = 3.168e+04 kcal/mol (3.166e+04 without restraints) Performing minimization step: 311. Total energy = 3.164e+04 kcal/mol (3.162e+04 without restraints) Performing minimization step: 312. Total energy = 3.16e+04 kcal/mol (3.158e+04 without restraints) Performing minimization step: 313. Total energy = 3.155e+04 kcal/mol (3.154e+04 without restraints) Performing minimization step: 314. Total energy = 3.151e+04 kcal/mol (3.15e+04 without restraints) Performing minimization step: 315. Total energy = 3.147e+04 kcal/mol (3.146e+04 without restraints) Performing minimization step: 316. Total energy = 3.143e+04 kcal/mol (3.142e+04 without restraints) Performing minimization step: 317. Total energy = 3.139e+04 kcal/mol (3.138e+04 without restraints) Performing minimization step: 318. Total energy = 3.135e+04 kcal/mol (3.134e+04 without restraints) Performing minimization step: 319. Total energy = 3.131e+04 kcal/mol (3.13e+04 without restraints) Performing minimization step: 320. Total energy = 3.127e+04 kcal/mol (3.126e+04 without restraints) Performing minimization step: 321. Total energy = 3.123e+04 kcal/mol (3.122e+04 without restraints) Performing minimization step: 322. Total energy = 3.119e+04 kcal/mol (3.118e+04 without restraints) Performing minimization step: 323. Total energy = 3.115e+04 kcal/mol (3.114e+04 without restraints) Performing minimization step: 324. Total energy = 3.111e+04 kcal/mol (3.11e+04 without restraints) Performing minimization step: 325. Total energy = 3.107e+04 kcal/mol (3.106e+04 without restraints) Performing minimization step: 326. Total energy = 3.103e+04 kcal/mol (3.102e+04 without restraints) Performing minimization step: 327. Total energy = 3.099e+04 kcal/mol (3.098e+04 without restraints) Performing minimization step: 328. Total energy = 3.095e+04 kcal/mol (3.094e+04 without restraints) Performing minimization step: 329. Total energy = 3.091e+04 kcal/mol (3.09e+04 without restraints) Performing minimization step: 330. Total energy = 3.088e+04 kcal/mol (3.086e+04 without restraints) Performing minimization step: 331. Total energy = 3.084e+04 kcal/mol (3.082e+04 without restraints) Performing minimization step: 332. Total energy = 3.08e+04 kcal/mol (3.078e+04 without restraints) Performing minimization step: 333. Total energy = 3.076e+04 kcal/mol (3.074e+04 without restraints) Performing minimization step: 334. Total energy = 3.072e+04 kcal/mol (3.071e+04 without restraints) Performing minimization step: 335. Total energy = 3.068e+04 kcal/mol (3.067e+04 without restraints) Performing minimization step: 336. Total energy = 3.064e+04 kcal/mol (3.063e+04 without restraints) Performing minimization step: 337. Total energy = 3.06e+04 kcal/mol (3.059e+04 without restraints) Performing minimization step: 338. Total energy = 3.056e+04 kcal/mol (3.055e+04 without restraints) Performing minimization step: 339. Total energy = 3.052e+04 kcal/mol (3.051e+04 without restraints) Performing minimization step: 340. Total energy = 3.048e+04 kcal/mol (3.047e+04 without restraints) Performing minimization step: 341. Total energy = 3.044e+04 kcal/mol (3.043e+04 without restraints) Performing minimization step: 342. Total energy = 3.04e+04 kcal/mol (3.039e+04 without restraints) Performing minimization step: 343. Total energy = 3.036e+04 kcal/mol (3.035e+04 without restraints) Performing minimization step: 344. Total energy = 3.032e+04 kcal/mol (3.031e+04 without restraints) Performing minimization step: 345. Total energy = 3.028e+04 kcal/mol (3.027e+04 without restraints) Performing minimization step: 346. Total energy = 3.025e+04 kcal/mol (3.023e+04 without restraints) Performing minimization step: 347. Total energy = 3.021e+04 kcal/mol (3.019e+04 without restraints) Performing minimization step: 348. Total energy = 3.017e+04 kcal/mol (3.016e+04 without restraints) Performing minimization step: 349. Total energy = 3.013e+04 kcal/mol (3.012e+04 without restraints) Performing minimization step: 350. Total energy = 3.009e+04 kcal/mol (3.008e+04 without restraints) Performing minimization step: 351. Total energy = 3.005e+04 kcal/mol (3.004e+04 without restraints) Performing minimization step: 352. Total energy = 3.001e+04 kcal/mol (3e+04 without restraints) Performing minimization step: 353. Total energy = 2.997e+04 kcal/mol (2.996e+04 without restraints) Performing minimization step: 354. Total energy = 2.993e+04 kcal/mol (2.992e+04 without restraints) Performing minimization step: 355. Total energy = 2.989e+04 kcal/mol (2.988e+04 without restraints) Performing minimization step: 356. Total energy = 2.986e+04 kcal/mol (2.984e+04 without restraints) Performing minimization step: 357. Total energy = 2.982e+04 kcal/mol (2.981e+04 without restraints) Performing minimization step: 358. Total energy = 2.978e+04 kcal/mol (2.977e+04 without restraints) Performing minimization step: 359. Total energy = 2.974e+04 kcal/mol (2.973e+04 without restraints) Performing minimization step: 360. Total energy = 2.97e+04 kcal/mol (2.969e+04 without restraints) Performing minimization step: 361. Total energy = 2.966e+04 kcal/mol (2.965e+04 without restraints) Performing minimization step: 362. Total energy = 2.962e+04 kcal/mol (2.961e+04 without restraints) Performing minimization step: 363. Total energy = 2.959e+04 kcal/mol (2.957e+04 without restraints) Performing minimization step: 364. Total energy = 2.955e+04 kcal/mol (2.954e+04 without restraints) Performing minimization step: 365. Total energy = 2.951e+04 kcal/mol (2.95e+04 without restraints) Performing minimization step: 366. Total energy = 2.947e+04 kcal/mol (2.946e+04 without restraints) Performing minimization step: 367. Total energy = 2.943e+04 kcal/mol (2.942e+04 without restraints) Performing minimization step: 368. Total energy = 2.939e+04 kcal/mol (2.938e+04 without restraints) Performing minimization step: 369. Total energy = 2.936e+04 kcal/mol (2.935e+04 without restraints) Performing minimization step: 370. Total energy = 2.932e+04 kcal/mol (2.931e+04 without restraints) Performing minimization step: 371. Total energy = 2.928e+04 kcal/mol (2.927e+04 without restraints) Performing minimization step: 372. Total energy = 2.924e+04 kcal/mol (2.923e+04 without restraints) Performing minimization step: 373. Total energy = 2.92e+04 kcal/mol (2.919e+04 without restraints) Performing minimization step: 374. Total energy = 2.917e+04 kcal/mol (2.915e+04 without restraints) Performing minimization step: 375. Total energy = 2.913e+04 kcal/mol (2.912e+04 without restraints) Performing minimization step: 376. Total energy = 2.909e+04 kcal/mol (2.908e+04 without restraints) Performing minimization step: 377. Total energy = 2.905e+04 kcal/mol (2.904e+04 without restraints) Performing minimization step: 378. Total energy = 2.901e+04 kcal/mol (2.9e+04 without restraints) Performing minimization step: 379. Total energy = 2.898e+04 kcal/mol (2.897e+04 without restraints) Performing minimization step: 380. Total energy = 2.894e+04 kcal/mol (2.893e+04 without restraints) Performing minimization step: 381. Total energy = 2.89e+04 kcal/mol (2.889e+04 without restraints) Performing minimization step: 382. Total energy = 2.886e+04 kcal/mol (2.885e+04 without restraints) Performing minimization step: 383. Total energy = 2.883e+04 kcal/mol (2.881e+04 without restraints) Performing minimization step: 384. Total energy = 2.879e+04 kcal/mol (2.878e+04 without restraints) Performing minimization step: 385. Total energy = 2.875e+04 kcal/mol (2.874e+04 without restraints) Performing minimization step: 386. Total energy = 2.871e+04 kcal/mol (2.87e+04 without restraints) Performing minimization step: 387. Total energy = 2.868e+04 kcal/mol (2.866e+04 without restraints) Performing minimization step: 388. Total energy = 2.864e+04 kcal/mol (2.863e+04 without restraints) Performing minimization step: 389. Total energy = 2.86e+04 kcal/mol (2.859e+04 without restraints) Performing minimization step: 390. Total energy = 2.856e+04 kcal/mol (2.855e+04 without restraints) Performing minimization step: 391. Total energy = 2.853e+04 kcal/mol (2.852e+04 without restraints) Performing minimization step: 392. Total energy = 2.849e+04 kcal/mol (2.848e+04 without restraints) Performing minimization step: 393. Total energy = 2.845e+04 kcal/mol (2.844e+04 without restraints) Performing minimization step: 394. Total energy = 2.841e+04 kcal/mol (2.84e+04 without restraints) Performing minimization step: 395. Total energy = 2.838e+04 kcal/mol (2.837e+04 without restraints) Performing minimization step: 396. Total energy = 2.834e+04 kcal/mol (2.833e+04 without restraints) Performing minimization step: 397. Total energy = 2.83e+04 kcal/mol (2.829e+04 without restraints) Performing minimization step: 398. Total energy = 2.827e+04 kcal/mol (2.826e+04 without restraints) Performing minimization step: 399. Total energy = 2.823e+04 kcal/mol (2.822e+04 without restraints) Performing minimization step: 400. Total energy = 2.819e+04 kcal/mol (2.818e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 401. Total energy = 2.816e+04 kcal/mol (2.814e+04 without restraints) Performing minimization step: 402. Total energy = 2.812e+04 kcal/mol (2.811e+04 without restraints) Performing minimization step: 403. Total energy = 2.808e+04 kcal/mol (2.807e+04 without restraints) Performing minimization step: 404. Total energy = 2.805e+04 kcal/mol (2.803e+04 without restraints) Performing minimization step: 405. Total energy = 2.801e+04 kcal/mol (2.8e+04 without restraints) Performing minimization step: 406. Total energy = 2.797e+04 kcal/mol (2.796e+04 without restraints) Performing minimization step: 407. Total energy = 2.794e+04 kcal/mol (2.792e+04 without restraints) Performing minimization step: 408. Total energy = 2.79e+04 kcal/mol (2.789e+04 without restraints) Performing minimization step: 409. Total energy = 2.786e+04 kcal/mol (2.785e+04 without restraints) Performing minimization step: 410. Total energy = 2.783e+04 kcal/mol (2.781e+04 without restraints) Performing minimization step: 411. Total energy = 2.779e+04 kcal/mol (2.778e+04 without restraints) Performing minimization step: 412. Total energy = 2.775e+04 kcal/mol (2.774e+04 without restraints) Performing minimization step: 413. Total energy = 2.772e+04 kcal/mol (2.77e+04 without restraints) Performing minimization step: 414. Total energy = 2.768e+04 kcal/mol (2.767e+04 without restraints) Performing minimization step: 415. Total energy = 2.764e+04 kcal/mol (2.763e+04 without restraints) Performing minimization step: 416. Total energy = 2.761e+04 kcal/mol (2.76e+04 without restraints) Performing minimization step: 417. Total energy = 2.757e+04 kcal/mol (2.756e+04 without restraints) Performing minimization step: 418. Total energy = 2.753e+04 kcal/mol (2.752e+04 without restraints) Performing minimization step: 419. Total energy = 2.75e+04 kcal/mol (2.749e+04 without restraints) Performing minimization step: 420. Total energy = 2.746e+04 kcal/mol (2.745e+04 without restraints) Performing minimization step: 421. Total energy = 2.743e+04 kcal/mol (2.742e+04 without restraints) Performing minimization step: 422. Total energy = 2.739e+04 kcal/mol (2.738e+04 without restraints) Performing minimization step: 423. Total energy = 2.735e+04 kcal/mol (2.734e+04 without restraints) Performing minimization step: 424. Total energy = 2.732e+04 kcal/mol (2.731e+04 without restraints) Performing minimization step: 425. Total energy = 2.728e+04 kcal/mol (2.727e+04 without restraints) Performing minimization step: 426. Total energy = 2.725e+04 kcal/mol (2.724e+04 without restraints) Performing minimization step: 427. Total energy = 2.721e+04 kcal/mol (2.72e+04 without restraints) Performing minimization step: 428. Total energy = 2.718e+04 kcal/mol (2.716e+04 without restraints) Performing minimization step: 429. Total energy = 2.714e+04 kcal/mol (2.713e+04 without restraints) Performing minimization step: 430. Total energy = 2.71e+04 kcal/mol (2.709e+04 without restraints) Performing minimization step: 431. Total energy = 2.707e+04 kcal/mol (2.706e+04 without restraints) Performing minimization step: 432. Total energy = 2.703e+04 kcal/mol (2.702e+04 without restraints) Performing minimization step: 433. Total energy = 2.7e+04 kcal/mol (2.699e+04 without restraints) Performing minimization step: 434. Total energy = 2.696e+04 kcal/mol (2.695e+04 without restraints) Performing minimization step: 435. Total energy = 2.693e+04 kcal/mol (2.691e+04 without restraints) Performing minimization step: 436. Total energy = 2.689e+04 kcal/mol (2.688e+04 without restraints) Performing minimization step: 437. Total energy = 2.686e+04 kcal/mol (2.684e+04 without restraints) Performing minimization step: 438. Total energy = 2.682e+04 kcal/mol (2.681e+04 without restraints) Performing minimization step: 439. Total energy = 2.678e+04 kcal/mol (2.677e+04 without restraints) Performing minimization step: 440. Total energy = 2.675e+04 kcal/mol (2.674e+04 without restraints) Performing minimization step: 441. Total energy = 2.671e+04 kcal/mol (2.67e+04 without restraints) Performing minimization step: 442. Total energy = 2.668e+04 kcal/mol (2.667e+04 without restraints) Performing minimization step: 443. Total energy = 2.664e+04 kcal/mol (2.663e+04 without restraints) Performing minimization step: 444. Total energy = 2.661e+04 kcal/mol (2.66e+04 without restraints) Performing minimization step: 445. Total energy = 2.657e+04 kcal/mol (2.656e+04 without restraints) Performing minimization step: 446. Total energy = 2.654e+04 kcal/mol (2.653e+04 without restraints) Performing minimization step: 447. Total energy = 2.65e+04 kcal/mol (2.649e+04 without restraints) Performing minimization step: 448. Total energy = 2.647e+04 kcal/mol (2.646e+04 without restraints) Performing minimization step: 449. Total energy = 2.643e+04 kcal/mol (2.642e+04 without restraints) Performing minimization step: 450. Total energy = 2.64e+04 kcal/mol (2.639e+04 without restraints) Performing minimization step: 451. Total energy = 2.636e+04 kcal/mol (2.635e+04 without restraints) Performing minimization step: 452. Total energy = 2.633e+04 kcal/mol (2.632e+04 without restraints) Performing minimization step: 453. Total energy = 2.629e+04 kcal/mol (2.628e+04 without restraints) Performing minimization step: 454. Total energy = 2.626e+04 kcal/mol (2.625e+04 without restraints) Performing minimization step: 455. Total energy = 2.623e+04 kcal/mol (2.621e+04 without restraints) Performing minimization step: 456. Total energy = 2.619e+04 kcal/mol (2.618e+04 without restraints) Performing minimization step: 457. Total energy = 2.616e+04 kcal/mol (2.615e+04 without restraints) Performing minimization step: 458. Total energy = 2.612e+04 kcal/mol (2.611e+04 without restraints) Performing minimization step: 459. Total energy = 2.609e+04 kcal/mol (2.608e+04 without restraints) Performing minimization step: 460. Total energy = 2.605e+04 kcal/mol (2.604e+04 without restraints) Performing minimization step: 461. Total energy = 2.602e+04 kcal/mol (2.601e+04 without restraints) Performing minimization step: 462. Total energy = 2.598e+04 kcal/mol (2.597e+04 without restraints) Performing minimization step: 463. Total energy = 2.595e+04 kcal/mol (2.594e+04 without restraints) Performing minimization step: 464. Total energy = 2.592e+04 kcal/mol (2.591e+04 without restraints) Performing minimization step: 465. Total energy = 2.588e+04 kcal/mol (2.587e+04 without restraints) Performing minimization step: 466. Total energy = 2.585e+04 kcal/mol (2.584e+04 without restraints) Performing minimization step: 467. Total energy = 2.581e+04 kcal/mol (2.58e+04 without restraints) Performing minimization step: 468. Total energy = 2.578e+04 kcal/mol (2.577e+04 without restraints) Performing minimization step: 469. Total energy = 2.575e+04 kcal/mol (2.574e+04 without restraints) Performing minimization step: 470. Total energy = 2.571e+04 kcal/mol (2.57e+04 without restraints) Performing minimization step: 471. Total energy = 2.568e+04 kcal/mol (2.567e+04 without restraints) Performing minimization step: 472. Total energy = 2.564e+04 kcal/mol (2.563e+04 without restraints) Performing minimization step: 473. Total energy = 2.561e+04 kcal/mol (2.56e+04 without restraints) Performing minimization step: 474. Total energy = 2.558e+04 kcal/mol (2.557e+04 without restraints) Performing minimization step: 475. Total energy = 2.554e+04 kcal/mol (2.553e+04 without restraints) Performing minimization step: 476. Total energy = 2.551e+04 kcal/mol (2.55e+04 without restraints) Performing minimization step: 477. Total energy = 2.548e+04 kcal/mol (2.546e+04 without restraints) Performing minimization step: 478. Total energy = 2.544e+04 kcal/mol (2.543e+04 without restraints) Performing minimization step: 479. Total energy = 2.541e+04 kcal/mol (2.54e+04 without restraints) Performing minimization step: 480. Total energy = 2.538e+04 kcal/mol (2.536e+04 without restraints) Performing minimization step: 481. Total energy = 2.534e+04 kcal/mol (2.533e+04 without restraints) Performing minimization step: 482. Total energy = 2.531e+04 kcal/mol (2.53e+04 without restraints) Performing minimization step: 483. Total energy = 2.528e+04 kcal/mol (2.526e+04 without restraints) Performing minimization step: 484. Total energy = 2.524e+04 kcal/mol (2.523e+04 without restraints) Performing minimization step: 485. Total energy = 2.521e+04 kcal/mol (2.52e+04 without restraints) Performing minimization step: 486. Total energy = 2.518e+04 kcal/mol (2.516e+04 without restraints) Performing minimization step: 487. Total energy = 2.514e+04 kcal/mol (2.513e+04 without restraints) Performing minimization step: 488. Total energy = 2.511e+04 kcal/mol (2.51e+04 without restraints) Performing minimization step: 489. Total energy = 2.508e+04 kcal/mol (2.507e+04 without restraints) Performing minimization step: 490. Total energy = 2.504e+04 kcal/mol (2.503e+04 without restraints) Performing minimization step: 491. Total energy = 2.501e+04 kcal/mol (2.5e+04 without restraints) Performing minimization step: 492. Total energy = 2.498e+04 kcal/mol (2.497e+04 without restraints) Performing minimization step: 493. Total energy = 2.494e+04 kcal/mol (2.493e+04 without restraints) Performing minimization step: 494. Total energy = 2.491e+04 kcal/mol (2.49e+04 without restraints) Performing minimization step: 495. Total energy = 2.488e+04 kcal/mol (2.487e+04 without restraints) Performing minimization step: 496. Total energy = 2.485e+04 kcal/mol (2.483e+04 without restraints) Performing minimization step: 497. Total energy = 2.481e+04 kcal/mol (2.48e+04 without restraints) Performing minimization step: 498. Total energy = 2.478e+04 kcal/mol (2.477e+04 without restraints) Performing minimization step: 499. Total energy = 2.475e+04 kcal/mol (2.474e+04 without restraints) Performing minimization step: 500. Total energy = 2.472e+04 kcal/mol (2.47e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 501. Total energy = 2.468e+04 kcal/mol (2.467e+04 without restraints) Performing minimization step: 502. Total energy = 2.465e+04 kcal/mol (2.464e+04 without restraints) Performing minimization step: 503. Total energy = 2.462e+04 kcal/mol (2.461e+04 without restraints) Performing minimization step: 504. Total energy = 2.459e+04 kcal/mol (2.457e+04 without restraints) Performing minimization step: 505. Total energy = 2.455e+04 kcal/mol (2.454e+04 without restraints) Performing minimization step: 506. Total energy = 2.452e+04 kcal/mol (2.451e+04 without restraints) Performing minimization step: 507. Total energy = 2.449e+04 kcal/mol (2.448e+04 without restraints) Performing minimization step: 508. Total energy = 2.446e+04 kcal/mol (2.445e+04 without restraints) Performing minimization step: 509. Total energy = 2.442e+04 kcal/mol (2.441e+04 without restraints) Performing minimization step: 510. Total energy = 2.439e+04 kcal/mol (2.438e+04 without restraints) Performing minimization step: 511. Total energy = 2.436e+04 kcal/mol (2.435e+04 without restraints) Performing minimization step: 512. Total energy = 2.433e+04 kcal/mol (2.432e+04 without restraints) Performing minimization step: 513. Total energy = 2.43e+04 kcal/mol (2.429e+04 without restraints) Performing minimization step: 514. Total energy = 2.426e+04 kcal/mol (2.425e+04 without restraints) Performing minimization step: 515. Total energy = 2.423e+04 kcal/mol (2.422e+04 without restraints) Performing minimization step: 516. Total energy = 2.42e+04 kcal/mol (2.419e+04 without restraints) Performing minimization step: 517. Total energy = 2.417e+04 kcal/mol (2.416e+04 without restraints) Performing minimization step: 518. Total energy = 2.414e+04 kcal/mol (2.413e+04 without restraints) Performing minimization step: 519. Total energy = 2.411e+04 kcal/mol (2.409e+04 without restraints) Performing minimization step: 520. Total energy = 2.407e+04 kcal/mol (2.406e+04 without restraints) Performing minimization step: 521. Total energy = 2.404e+04 kcal/mol (2.403e+04 without restraints) Performing minimization step: 522. Total energy = 2.401e+04 kcal/mol (2.4e+04 without restraints) Performing minimization step: 523. Total energy = 2.398e+04 kcal/mol (2.397e+04 without restraints) Performing minimization step: 524. Total energy = 2.395e+04 kcal/mol (2.394e+04 without restraints) Performing minimization step: 525. Total energy = 2.392e+04 kcal/mol (2.391e+04 without restraints) Performing minimization step: 526. Total energy = 2.388e+04 kcal/mol (2.387e+04 without restraints) Performing minimization step: 527. Total energy = 2.385e+04 kcal/mol (2.384e+04 without restraints) Performing minimization step: 528. Total energy = 2.382e+04 kcal/mol (2.381e+04 without restraints) Performing minimization step: 529. Total energy = 2.379e+04 kcal/mol (2.378e+04 without restraints) Performing minimization step: 530. Total energy = 2.376e+04 kcal/mol (2.375e+04 without restraints) Performing minimization step: 531. Total energy = 2.373e+04 kcal/mol (2.372e+04 without restraints) Performing minimization step: 532. Total energy = 2.37e+04 kcal/mol (2.369e+04 without restraints) Performing minimization step: 533. Total energy = 2.367e+04 kcal/mol (2.366e+04 without restraints) Performing minimization step: 534. Total energy = 2.364e+04 kcal/mol (2.362e+04 without restraints) Performing minimization step: 535. Total energy = 2.36e+04 kcal/mol (2.359e+04 without restraints) Performing minimization step: 536. Total energy = 2.357e+04 kcal/mol (2.356e+04 without restraints) Performing minimization step: 537. Total energy = 2.354e+04 kcal/mol (2.353e+04 without restraints) Performing minimization step: 538. Total energy = 2.351e+04 kcal/mol (2.35e+04 without restraints) Performing minimization step: 539. Total energy = 2.348e+04 kcal/mol (2.347e+04 without restraints) Performing minimization step: 540. Total energy = 2.345e+04 kcal/mol (2.344e+04 without restraints) Performing minimization step: 541. Total energy = 2.342e+04 kcal/mol (2.341e+04 without restraints) Performing minimization step: 542. Total energy = 2.339e+04 kcal/mol (2.338e+04 without restraints) Performing minimization step: 543. Total energy = 2.336e+04 kcal/mol (2.335e+04 without restraints) Performing minimization step: 544. Total energy = 2.333e+04 kcal/mol (2.332e+04 without restraints) Performing minimization step: 545. Total energy = 2.33e+04 kcal/mol (2.329e+04 without restraints) Performing minimization step: 546. Total energy = 2.327e+04 kcal/mol (2.326e+04 without restraints) Performing minimization step: 547. Total energy = 2.324e+04 kcal/mol (2.323e+04 without restraints) Performing minimization step: 548. Total energy = 2.321e+04 kcal/mol (2.32e+04 without restraints) Performing minimization step: 549. Total energy = 2.318e+04 kcal/mol (2.317e+04 without restraints) Performing minimization step: 550. Total energy = 2.315e+04 kcal/mol (2.314e+04 without restraints) Performing minimization step: 551. Total energy = 2.312e+04 kcal/mol (2.311e+04 without restraints) Performing minimization step: 552. Total energy = 2.309e+04 kcal/mol (2.308e+04 without restraints) Performing minimization step: 553. Total energy = 2.306e+04 kcal/mol (2.305e+04 without restraints) Performing minimization step: 554. Total energy = 2.303e+04 kcal/mol (2.302e+04 without restraints) Performing minimization step: 555. Total energy = 2.3e+04 kcal/mol (2.299e+04 without restraints) Performing minimization step: 556. Total energy = 2.297e+04 kcal/mol (2.296e+04 without restraints) Performing minimization step: 557. Total energy = 2.294e+04 kcal/mol (2.293e+04 without restraints) Performing minimization step: 558. Total energy = 2.291e+04 kcal/mol (2.29e+04 without restraints) Performing minimization step: 559. Total energy = 2.288e+04 kcal/mol (2.287e+04 without restraints) Performing minimization step: 560. Total energy = 2.285e+04 kcal/mol (2.284e+04 without restraints) Performing minimization step: 561. Total energy = 2.282e+04 kcal/mol (2.281e+04 without restraints) Performing minimization step: 562. Total energy = 2.279e+04 kcal/mol (2.278e+04 without restraints) Performing minimization step: 563. Total energy = 2.276e+04 kcal/mol (2.275e+04 without restraints) Performing minimization step: 564. Total energy = 2.273e+04 kcal/mol (2.272e+04 without restraints) Performing minimization step: 565. Total energy = 2.27e+04 kcal/mol (2.269e+04 without restraints) Performing minimization step: 566. Total energy = 2.267e+04 kcal/mol (2.266e+04 without restraints) Performing minimization step: 567. Total energy = 2.264e+04 kcal/mol (2.263e+04 without restraints) Performing minimization step: 568. Total energy = 2.261e+04 kcal/mol (2.26e+04 without restraints) Performing minimization step: 569. Total energy = 2.258e+04 kcal/mol (2.257e+04 without restraints) Performing minimization step: 570. Total energy = 2.255e+04 kcal/mol (2.254e+04 without restraints) Performing minimization step: 571. Total energy = 2.252e+04 kcal/mol (2.251e+04 without restraints) Performing minimization step: 572. Total energy = 2.249e+04 kcal/mol (2.248e+04 without restraints) Performing minimization step: 573. Total energy = 2.246e+04 kcal/mol (2.245e+04 without restraints) Performing minimization step: 574. Total energy = 2.243e+04 kcal/mol (2.242e+04 without restraints) Performing minimization step: 575. Total energy = 2.241e+04 kcal/mol (2.24e+04 without restraints) Performing minimization step: 576. Total energy = 2.238e+04 kcal/mol (2.237e+04 without restraints) Performing minimization step: 577. Total energy = 2.235e+04 kcal/mol (2.234e+04 without restraints) Performing minimization step: 578. Total energy = 2.232e+04 kcal/mol (2.231e+04 without restraints) Performing minimization step: 579. Total energy = 2.229e+04 kcal/mol (2.228e+04 without restraints) Performing minimization step: 580. Total energy = 2.226e+04 kcal/mol (2.225e+04 without restraints) Performing minimization step: 581. Total energy = 2.223e+04 kcal/mol (2.222e+04 without restraints) Performing minimization step: 582. Total energy = 2.22e+04 kcal/mol (2.219e+04 without restraints) Performing minimization step: 583. Total energy = 2.218e+04 kcal/mol (2.216e+04 without restraints) Performing minimization step: 584. Total energy = 2.215e+04 kcal/mol (2.214e+04 without restraints) Performing minimization step: 585. Total energy = 2.212e+04 kcal/mol (2.211e+04 without restraints) Performing minimization step: 586. Total energy = 2.209e+04 kcal/mol (2.208e+04 without restraints) Performing minimization step: 587. Total energy = 2.206e+04 kcal/mol (2.205e+04 without restraints) Performing minimization step: 588. Total energy = 2.203e+04 kcal/mol (2.202e+04 without restraints) Performing minimization step: 589. Total energy = 2.2e+04 kcal/mol (2.199e+04 without restraints) Performing minimization step: 590. Total energy = 2.198e+04 kcal/mol (2.197e+04 without restraints) Performing minimization step: 591. Total energy = 2.195e+04 kcal/mol (2.194e+04 without restraints) Performing minimization step: 592. Total energy = 2.192e+04 kcal/mol (2.191e+04 without restraints) Performing minimization step: 593. Total energy = 2.189e+04 kcal/mol (2.188e+04 without restraints) Performing minimization step: 594. Total energy = 2.186e+04 kcal/mol (2.185e+04 without restraints) Performing minimization step: 595. Total energy = 2.183e+04 kcal/mol (2.182e+04 without restraints) Performing minimization step: 596. Total energy = 2.181e+04 kcal/mol (2.18e+04 without restraints) Performing minimization step: 597. Total energy = 2.178e+04 kcal/mol (2.177e+04 without restraints) Performing minimization step: 598. Total energy = 2.175e+04 kcal/mol (2.174e+04 without restraints) Performing minimization step: 599. Total energy = 2.172e+04 kcal/mol (2.171e+04 without restraints) Performing minimization step: 600. Total energy = 2.169e+04 kcal/mol (2.168e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 601. Total energy = 2.167e+04 kcal/mol (2.166e+04 without restraints) Performing minimization step: 602. Total energy = 2.164e+04 kcal/mol (2.163e+04 without restraints) Performing minimization step: 603. Total energy = 2.161e+04 kcal/mol (2.16e+04 without restraints) Performing minimization step: 604. Total energy = 2.158e+04 kcal/mol (2.157e+04 without restraints) Performing minimization step: 605. Total energy = 2.156e+04 kcal/mol (2.155e+04 without restraints) Performing minimization step: 606. Total energy = 2.153e+04 kcal/mol (2.152e+04 without restraints) Performing minimization step: 607. Total energy = 2.15e+04 kcal/mol (2.149e+04 without restraints) Performing minimization step: 608. Total energy = 2.147e+04 kcal/mol (2.146e+04 without restraints) Performing minimization step: 609. Total energy = 2.145e+04 kcal/mol (2.144e+04 without restraints) Performing minimization step: 610. Total energy = 2.142e+04 kcal/mol (2.141e+04 without restraints) Performing minimization step: 611. Total energy = 2.139e+04 kcal/mol (2.138e+04 without restraints) Performing minimization step: 612. Total energy = 2.136e+04 kcal/mol (2.135e+04 without restraints) Performing minimization step: 613. Total energy = 2.134e+04 kcal/mol (2.133e+04 without restraints) Performing minimization step: 614. Total energy = 2.131e+04 kcal/mol (2.13e+04 without restraints) Performing minimization step: 615. Total energy = 2.128e+04 kcal/mol (2.127e+04 without restraints) Performing minimization step: 616. Total energy = 2.126e+04 kcal/mol (2.125e+04 without restraints) Performing minimization step: 617. Total energy = 2.123e+04 kcal/mol (2.122e+04 without restraints) Performing minimization step: 618. Total energy = 2.12e+04 kcal/mol (2.119e+04 without restraints) Performing minimization step: 619. Total energy = 2.117e+04 kcal/mol (2.116e+04 without restraints) Performing minimization step: 620. Total energy = 2.115e+04 kcal/mol (2.114e+04 without restraints) Performing minimization step: 621. Total energy = 2.112e+04 kcal/mol (2.111e+04 without restraints) Performing minimization step: 622. Total energy = 2.109e+04 kcal/mol (2.108e+04 without restraints) Performing minimization step: 623. Total energy = 2.107e+04 kcal/mol (2.106e+04 without restraints) Performing minimization step: 624. Total energy = 2.104e+04 kcal/mol (2.103e+04 without restraints) Performing minimization step: 625. Total energy = 2.101e+04 kcal/mol (2.1e+04 without restraints) Performing minimization step: 626. Total energy = 2.099e+04 kcal/mol (2.098e+04 without restraints) Performing minimization step: 627. Total energy = 2.096e+04 kcal/mol (2.095e+04 without restraints) Performing minimization step: 628. Total energy = 2.093e+04 kcal/mol (2.092e+04 without restraints) Performing minimization step: 629. Total energy = 2.091e+04 kcal/mol (2.09e+04 without restraints) Performing minimization step: 630. Total energy = 2.088e+04 kcal/mol (2.087e+04 without restraints) Performing minimization step: 631. Total energy = 2.085e+04 kcal/mol (2.084e+04 without restraints) Performing minimization step: 632. Total energy = 2.083e+04 kcal/mol (2.082e+04 without restraints) Performing minimization step: 633. Total energy = 2.08e+04 kcal/mol (2.079e+04 without restraints) Performing minimization step: 634. Total energy = 2.078e+04 kcal/mol (2.077e+04 without restraints) Performing minimization step: 635. Total energy = 2.075e+04 kcal/mol (2.074e+04 without restraints) Performing minimization step: 636. Total energy = 2.072e+04 kcal/mol (2.071e+04 without restraints) Performing minimization step: 637. Total energy = 2.07e+04 kcal/mol (2.069e+04 without restraints) Performing minimization step: 638. Total energy = 2.067e+04 kcal/mol (2.066e+04 without restraints) Performing minimization step: 639. Total energy = 2.064e+04 kcal/mol (2.063e+04 without restraints) Performing minimization step: 640. Total energy = 2.062e+04 kcal/mol (2.061e+04 without restraints) Performing minimization step: 641. Total energy = 2.059e+04 kcal/mol (2.058e+04 without restraints) Performing minimization step: 642. Total energy = 2.057e+04 kcal/mol (2.056e+04 without restraints) Performing minimization step: 643. Total energy = 2.054e+04 kcal/mol (2.053e+04 without restraints) Performing minimization step: 644. Total energy = 2.051e+04 kcal/mol (2.05e+04 without restraints) Performing minimization step: 645. Total energy = 2.049e+04 kcal/mol (2.048e+04 without restraints) Performing minimization step: 646. Total energy = 2.046e+04 kcal/mol (2.045e+04 without restraints) Performing minimization step: 647. Total energy = 2.044e+04 kcal/mol (2.043e+04 without restraints) Performing minimization step: 648. Total energy = 2.041e+04 kcal/mol (2.04e+04 without restraints) Performing minimization step: 649. Total energy = 2.039e+04 kcal/mol (2.038e+04 without restraints) Performing minimization step: 650. Total energy = 2.036e+04 kcal/mol (2.035e+04 without restraints) Performing minimization step: 651. Total energy = 2.034e+04 kcal/mol (2.033e+04 without restraints) Performing minimization step: 652. Total energy = 2.031e+04 kcal/mol (2.03e+04 without restraints) Performing minimization step: 653. Total energy = 2.028e+04 kcal/mol (2.027e+04 without restraints) Performing minimization step: 654. Total energy = 2.026e+04 kcal/mol (2.025e+04 without restraints) Performing minimization step: 655. Total energy = 2.023e+04 kcal/mol (2.022e+04 without restraints) Performing minimization step: 656. Total energy = 2.021e+04 kcal/mol (2.02e+04 without restraints) Performing minimization step: 657. Total energy = 2.018e+04 kcal/mol (2.017e+04 without restraints) Performing minimization step: 658. Total energy = 2.016e+04 kcal/mol (2.015e+04 without restraints) Performing minimization step: 659. Total energy = 2.013e+04 kcal/mol (2.012e+04 without restraints) Performing minimization step: 660. Total energy = 2.011e+04 kcal/mol (2.01e+04 without restraints) Performing minimization step: 661. Total energy = 2.008e+04 kcal/mol (2.007e+04 without restraints) Performing minimization step: 662. Total energy = 2.006e+04 kcal/mol (2.005e+04 without restraints) Performing minimization step: 663. Total energy = 2.003e+04 kcal/mol (2.002e+04 without restraints) Performing minimization step: 664. Total energy = 2.001e+04 kcal/mol (2e+04 without restraints) Performing minimization step: 665. Total energy = 1.998e+04 kcal/mol (1.997e+04 without restraints) Performing minimization step: 666. Total energy = 1.996e+04 kcal/mol (1.995e+04 without restraints) Performing minimization step: 667. Total energy = 1.993e+04 kcal/mol (1.992e+04 without restraints) Performing minimization step: 668. Total energy = 1.991e+04 kcal/mol (1.99e+04 without restraints) Performing minimization step: 669. Total energy = 1.988e+04 kcal/mol (1.987e+04 without restraints) Performing minimization step: 670. Total energy = 1.986e+04 kcal/mol (1.985e+04 without restraints) Performing minimization step: 671. Total energy = 1.983e+04 kcal/mol (1.982e+04 without restraints) Performing minimization step: 672. Total energy = 1.981e+04 kcal/mol (1.98e+04 without restraints) Performing minimization step: 673. Total energy = 1.978e+04 kcal/mol (1.978e+04 without restraints) Performing minimization step: 674. Total energy = 1.976e+04 kcal/mol (1.975e+04 without restraints) Performing minimization step: 675. Total energy = 1.974e+04 kcal/mol (1.973e+04 without restraints) Performing minimization step: 676. Total energy = 1.971e+04 kcal/mol (1.97e+04 without restraints) Performing minimization step: 677. Total energy = 1.969e+04 kcal/mol (1.968e+04 without restraints) Performing minimization step: 678. Total energy = 1.966e+04 kcal/mol (1.965e+04 without restraints) Performing minimization step: 679. Total energy = 1.964e+04 kcal/mol (1.963e+04 without restraints) Performing minimization step: 680. Total energy = 1.961e+04 kcal/mol (1.96e+04 without restraints) Performing minimization step: 681. Total energy = 1.959e+04 kcal/mol (1.958e+04 without restraints) Performing minimization step: 682. Total energy = 1.957e+04 kcal/mol (1.956e+04 without restraints) Performing minimization step: 683. Total energy = 1.954e+04 kcal/mol (1.953e+04 without restraints) Performing minimization step: 684. Total energy = 1.952e+04 kcal/mol (1.951e+04 without restraints) Performing minimization step: 685. Total energy = 1.949e+04 kcal/mol (1.948e+04 without restraints) Performing minimization step: 686. Total energy = 1.947e+04 kcal/mol (1.946e+04 without restraints) Performing minimization step: 687. Total energy = 1.945e+04 kcal/mol (1.944e+04 without restraints) Performing minimization step: 688. Total energy = 1.942e+04 kcal/mol (1.941e+04 without restraints) Performing minimization step: 689. Total energy = 1.94e+04 kcal/mol (1.939e+04 without restraints) Performing minimization step: 690. Total energy = 1.937e+04 kcal/mol (1.936e+04 without restraints) Performing minimization step: 691. Total energy = 1.935e+04 kcal/mol (1.934e+04 without restraints) Performing minimization step: 692. Total energy = 1.933e+04 kcal/mol (1.932e+04 without restraints) Performing minimization step: 693. Total energy = 1.93e+04 kcal/mol (1.929e+04 without restraints) Performing minimization step: 694. Total energy = 1.928e+04 kcal/mol (1.927e+04 without restraints) Performing minimization step: 695. Total energy = 1.926e+04 kcal/mol (1.925e+04 without restraints) Performing minimization step: 696. Total energy = 1.923e+04 kcal/mol (1.922e+04 without restraints) Performing minimization step: 697. Total energy = 1.921e+04 kcal/mol (1.92e+04 without restraints) Performing minimization step: 698. Total energy = 1.919e+04 kcal/mol (1.918e+04 without restraints) Performing minimization step: 699. Total energy = 1.916e+04 kcal/mol (1.915e+04 without restraints) Performing minimization step: 700. Total energy = 1.914e+04 kcal/mol (1.913e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 701. Total energy = 1.912e+04 kcal/mol (1.911e+04 without restraints) Performing minimization step: 702. Total energy = 1.909e+04 kcal/mol (1.908e+04 without restraints) Performing minimization step: 703. Total energy = 1.907e+04 kcal/mol (1.906e+04 without restraints) Performing minimization step: 704. Total energy = 1.905e+04 kcal/mol (1.904e+04 without restraints) Performing minimization step: 705. Total energy = 1.902e+04 kcal/mol (1.901e+04 without restraints) Performing minimization step: 706. Total energy = 1.9e+04 kcal/mol (1.899e+04 without restraints) Performing minimization step: 707. Total energy = 1.898e+04 kcal/mol (1.897e+04 without restraints) Performing minimization step: 708. Total energy = 1.895e+04 kcal/mol (1.894e+04 without restraints) Performing minimization step: 709. Total energy = 1.893e+04 kcal/mol (1.892e+04 without restraints) Performing minimization step: 710. Total energy = 1.891e+04 kcal/mol (1.89e+04 without restraints) Performing minimization step: 711. Total energy = 1.888e+04 kcal/mol (1.887e+04 without restraints) Performing minimization step: 712. Total energy = 1.886e+04 kcal/mol (1.885e+04 without restraints) Performing minimization step: 713. Total energy = 1.884e+04 kcal/mol (1.883e+04 without restraints) Performing minimization step: 714. Total energy = 1.882e+04 kcal/mol (1.881e+04 without restraints) Performing minimization step: 715. Total energy = 1.879e+04 kcal/mol (1.878e+04 without restraints) Performing minimization step: 716. Total energy = 1.877e+04 kcal/mol (1.876e+04 without restraints) Performing minimization step: 717. Total energy = 1.875e+04 kcal/mol (1.874e+04 without restraints) Performing minimization step: 718. Total energy = 1.873e+04 kcal/mol (1.872e+04 without restraints) Performing minimization step: 719. Total energy = 1.87e+04 kcal/mol (1.869e+04 without restraints) Performing minimization step: 720. Total energy = 1.868e+04 kcal/mol (1.867e+04 without restraints) Performing minimization step: 721. Total energy = 1.866e+04 kcal/mol (1.865e+04 without restraints) Performing minimization step: 722. Total energy = 1.864e+04 kcal/mol (1.863e+04 without restraints) Performing minimization step: 723. Total energy = 1.861e+04 kcal/mol (1.86e+04 without restraints) Performing minimization step: 724. Total energy = 1.859e+04 kcal/mol (1.858e+04 without restraints) Performing minimization step: 725. Total energy = 1.857e+04 kcal/mol (1.856e+04 without restraints) Performing minimization step: 726. Total energy = 1.855e+04 kcal/mol (1.854e+04 without restraints) Performing minimization step: 727. Total energy = 1.852e+04 kcal/mol (1.851e+04 without restraints) Performing minimization step: 728. Total energy = 1.85e+04 kcal/mol (1.849e+04 without restraints) Performing minimization step: 729. Total energy = 1.848e+04 kcal/mol (1.847e+04 without restraints) Performing minimization step: 730. Total energy = 1.846e+04 kcal/mol (1.845e+04 without restraints) Performing minimization step: 731. Total energy = 1.843e+04 kcal/mol (1.843e+04 without restraints) Performing minimization step: 732. Total energy = 1.841e+04 kcal/mol (1.84e+04 without restraints) Performing minimization step: 733. Total energy = 1.839e+04 kcal/mol (1.838e+04 without restraints) Performing minimization step: 734. Total energy = 1.837e+04 kcal/mol (1.836e+04 without restraints) Performing minimization step: 735. Total energy = 1.835e+04 kcal/mol (1.834e+04 without restraints) Performing minimization step: 736. Total energy = 1.833e+04 kcal/mol (1.832e+04 without restraints) Performing minimization step: 737. Total energy = 1.83e+04 kcal/mol (1.829e+04 without restraints) Performing minimization step: 738. Total energy = 1.828e+04 kcal/mol (1.827e+04 without restraints) Performing minimization step: 739. Total energy = 1.826e+04 kcal/mol (1.825e+04 without restraints) Performing minimization step: 740. Total energy = 1.824e+04 kcal/mol (1.823e+04 without restraints) Performing minimization step: 741. Total energy = 1.822e+04 kcal/mol (1.821e+04 without restraints) Performing minimization step: 742. Total energy = 1.819e+04 kcal/mol (1.819e+04 without restraints) Performing minimization step: 743. Total energy = 1.817e+04 kcal/mol (1.816e+04 without restraints) Performing minimization step: 744. Total energy = 1.815e+04 kcal/mol (1.814e+04 without restraints) Performing minimization step: 745. Total energy = 1.813e+04 kcal/mol (1.812e+04 without restraints) Performing minimization step: 746. Total energy = 1.811e+04 kcal/mol (1.81e+04 without restraints) Performing minimization step: 747. Total energy = 1.809e+04 kcal/mol (1.808e+04 without restraints) Performing minimization step: 748. Total energy = 1.807e+04 kcal/mol (1.806e+04 without restraints) Performing minimization step: 749. Total energy = 1.804e+04 kcal/mol (1.803e+04 without restraints) Performing minimization step: 750. Total energy = 1.802e+04 kcal/mol (1.801e+04 without restraints) Performing minimization step: 751. Total energy = 1.8e+04 kcal/mol (1.799e+04 without restraints) Performing minimization step: 752. Total energy = 1.798e+04 kcal/mol (1.797e+04 without restraints) Performing minimization step: 753. Total energy = 1.796e+04 kcal/mol (1.795e+04 without restraints) Performing minimization step: 754. Total energy = 1.794e+04 kcal/mol (1.793e+04 without restraints) Performing minimization step: 755. Total energy = 1.792e+04 kcal/mol (1.791e+04 without restraints) Performing minimization step: 756. Total energy = 1.79e+04 kcal/mol (1.789e+04 without restraints) Performing minimization step: 757. Total energy = 1.787e+04 kcal/mol (1.786e+04 without restraints) Performing minimization step: 758. Total energy = 1.785e+04 kcal/mol (1.784e+04 without restraints) Performing minimization step: 759. Total energy = 1.783e+04 kcal/mol (1.782e+04 without restraints) Performing minimization step: 760. Total energy = 1.781e+04 kcal/mol (1.78e+04 without restraints) Performing minimization step: 761. Total energy = 1.779e+04 kcal/mol (1.778e+04 without restraints) Performing minimization step: 762. Total energy = 1.777e+04 kcal/mol (1.776e+04 without restraints) Performing minimization step: 763. Total energy = 1.775e+04 kcal/mol (1.774e+04 without restraints) Performing minimization step: 764. Total energy = 1.773e+04 kcal/mol (1.772e+04 without restraints) Performing minimization step: 765. Total energy = 1.771e+04 kcal/mol (1.77e+04 without restraints) Performing minimization step: 766. Total energy = 1.769e+04 kcal/mol (1.768e+04 without restraints) Performing minimization step: 767. Total energy = 1.767e+04 kcal/mol (1.766e+04 without restraints) Performing minimization step: 768. Total energy = 1.764e+04 kcal/mol (1.764e+04 without restraints) Performing minimization step: 769. Total energy = 1.762e+04 kcal/mol (1.762e+04 without restraints) Performing minimization step: 770. Total energy = 1.76e+04 kcal/mol (1.759e+04 without restraints) Performing minimization step: 771. Total energy = 1.758e+04 kcal/mol (1.757e+04 without restraints) Performing minimization step: 772. Total energy = 1.756e+04 kcal/mol (1.755e+04 without restraints) Performing minimization step: 773. Total energy = 1.754e+04 kcal/mol (1.753e+04 without restraints) Performing minimization step: 774. Total energy = 1.752e+04 kcal/mol (1.751e+04 without restraints) Performing minimization step: 775. Total energy = 1.75e+04 kcal/mol (1.749e+04 without restraints) Performing minimization step: 776. Total energy = 1.748e+04 kcal/mol (1.747e+04 without restraints) Performing minimization step: 777. Total energy = 1.746e+04 kcal/mol (1.745e+04 without restraints) Performing minimization step: 778. Total energy = 1.744e+04 kcal/mol (1.743e+04 without restraints) Performing minimization step: 779. Total energy = 1.742e+04 kcal/mol (1.741e+04 without restraints) Performing minimization step: 780. Total energy = 1.74e+04 kcal/mol (1.739e+04 without restraints) Performing minimization step: 781. Total energy = 1.738e+04 kcal/mol (1.737e+04 without restraints) Performing minimization step: 782. Total energy = 1.736e+04 kcal/mol (1.735e+04 without restraints) Performing minimization step: 783. Total energy = 1.734e+04 kcal/mol (1.733e+04 without restraints) Performing minimization step: 784. Total energy = 1.732e+04 kcal/mol (1.731e+04 without restraints) Performing minimization step: 785. Total energy = 1.73e+04 kcal/mol (1.729e+04 without restraints) Performing minimization step: 786. Total energy = 1.728e+04 kcal/mol (1.727e+04 without restraints) Performing minimization step: 787. Total energy = 1.726e+04 kcal/mol (1.725e+04 without restraints) Performing minimization step: 788. Total energy = 1.724e+04 kcal/mol (1.723e+04 without restraints) Performing minimization step: 789. Total energy = 1.722e+04 kcal/mol (1.721e+04 without restraints) Performing minimization step: 790. Total energy = 1.72e+04 kcal/mol (1.719e+04 without restraints) Performing minimization step: 791. Total energy = 1.718e+04 kcal/mol (1.717e+04 without restraints) Performing minimization step: 792. Total energy = 1.716e+04 kcal/mol (1.715e+04 without restraints) Performing minimization step: 793. Total energy = 1.714e+04 kcal/mol (1.713e+04 without restraints) Performing minimization step: 794. Total energy = 1.712e+04 kcal/mol (1.711e+04 without restraints) Performing minimization step: 795. Total energy = 1.71e+04 kcal/mol (1.709e+04 without restraints) Performing minimization step: 796. Total energy = 1.708e+04 kcal/mol (1.707e+04 without restraints) Performing minimization step: 797. Total energy = 1.706e+04 kcal/mol (1.705e+04 without restraints) Performing minimization step: 798. Total energy = 1.704e+04 kcal/mol (1.703e+04 without restraints) Performing minimization step: 799. Total energy = 1.702e+04 kcal/mol (1.701e+04 without restraints) Performing minimization step: 800. Total energy = 1.7e+04 kcal/mol (1.699e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 801. Total energy = 1.698e+04 kcal/mol (1.697e+04 without restraints) Performing minimization step: 802. Total energy = 1.696e+04 kcal/mol (1.696e+04 without restraints) Performing minimization step: 803. Total energy = 1.694e+04 kcal/mol (1.694e+04 without restraints) Performing minimization step: 804. Total energy = 1.693e+04 kcal/mol (1.692e+04 without restraints) Performing minimization step: 805. Total energy = 1.691e+04 kcal/mol (1.69e+04 without restraints) Performing minimization step: 806. Total energy = 1.689e+04 kcal/mol (1.688e+04 without restraints) Performing minimization step: 807. Total energy = 1.687e+04 kcal/mol (1.686e+04 without restraints) Performing minimization step: 808. Total energy = 1.685e+04 kcal/mol (1.684e+04 without restraints) Performing minimization step: 809. Total energy = 1.683e+04 kcal/mol (1.682e+04 without restraints) Performing minimization step: 810. Total energy = 1.681e+04 kcal/mol (1.68e+04 without restraints) Performing minimization step: 811. Total energy = 1.679e+04 kcal/mol (1.678e+04 without restraints) Performing minimization step: 812. Total energy = 1.677e+04 kcal/mol (1.676e+04 without restraints) Performing minimization step: 813. Total energy = 1.675e+04 kcal/mol (1.674e+04 without restraints) Performing minimization step: 814. Total energy = 1.673e+04 kcal/mol (1.672e+04 without restraints) Performing minimization step: 815. Total energy = 1.671e+04 kcal/mol (1.671e+04 without restraints) Performing minimization step: 816. Total energy = 1.67e+04 kcal/mol (1.669e+04 without restraints) Performing minimization step: 817. Total energy = 1.668e+04 kcal/mol (1.667e+04 without restraints) Performing minimization step: 818. Total energy = 1.666e+04 kcal/mol (1.665e+04 without restraints) Performing minimization step: 819. Total energy = 1.664e+04 kcal/mol (1.663e+04 without restraints) Performing minimization step: 820. Total energy = 1.662e+04 kcal/mol (1.661e+04 without restraints) Performing minimization step: 821. Total energy = 1.66e+04 kcal/mol (1.659e+04 without restraints) Performing minimization step: 822. Total energy = 1.658e+04 kcal/mol (1.657e+04 without restraints) Performing minimization step: 823. Total energy = 1.656e+04 kcal/mol (1.655e+04 without restraints) Performing minimization step: 824. Total energy = 1.655e+04 kcal/mol (1.654e+04 without restraints) Performing minimization step: 825. Total energy = 1.653e+04 kcal/mol (1.652e+04 without restraints) Performing minimization step: 826. Total energy = 1.651e+04 kcal/mol (1.65e+04 without restraints) Performing minimization step: 827. Total energy = 1.649e+04 kcal/mol (1.648e+04 without restraints) Performing minimization step: 828. Total energy = 1.647e+04 kcal/mol (1.646e+04 without restraints) Performing minimization step: 829. Total energy = 1.645e+04 kcal/mol (1.644e+04 without restraints) Performing minimization step: 830. Total energy = 1.643e+04 kcal/mol (1.642e+04 without restraints) Performing minimization step: 831. Total energy = 1.642e+04 kcal/mol (1.641e+04 without restraints) Performing minimization step: 832. Total energy = 1.64e+04 kcal/mol (1.639e+04 without restraints) Performing minimization step: 833. Total energy = 1.638e+04 kcal/mol (1.637e+04 without restraints) Performing minimization step: 834. Total energy = 1.636e+04 kcal/mol (1.635e+04 without restraints) Performing minimization step: 835. Total energy = 1.634e+04 kcal/mol (1.633e+04 without restraints) Performing minimization step: 836. Total energy = 1.632e+04 kcal/mol (1.631e+04 without restraints) Performing minimization step: 837. Total energy = 1.631e+04 kcal/mol (1.63e+04 without restraints) Performing minimization step: 838. Total energy = 1.629e+04 kcal/mol (1.628e+04 without restraints) Performing minimization step: 839. Total energy = 1.627e+04 kcal/mol (1.626e+04 without restraints) Performing minimization step: 840. Total energy = 1.625e+04 kcal/mol (1.624e+04 without restraints) Performing minimization step: 841. Total energy = 1.623e+04 kcal/mol (1.622e+04 without restraints) Performing minimization step: 842. Total energy = 1.621e+04 kcal/mol (1.621e+04 without restraints) Performing minimization step: 843. Total energy = 1.62e+04 kcal/mol (1.619e+04 without restraints) Performing minimization step: 844. Total energy = 1.618e+04 kcal/mol (1.617e+04 without restraints) Performing minimization step: 845. Total energy = 1.616e+04 kcal/mol (1.615e+04 without restraints) Performing minimization step: 846. Total energy = 1.614e+04 kcal/mol (1.613e+04 without restraints) Performing minimization step: 847. Total energy = 1.612e+04 kcal/mol (1.612e+04 without restraints) Performing minimization step: 848. Total energy = 1.611e+04 kcal/mol (1.61e+04 without restraints) Performing minimization step: 849. Total energy = 1.609e+04 kcal/mol (1.608e+04 without restraints) Performing minimization step: 850. Total energy = 1.607e+04 kcal/mol (1.606e+04 without restraints) Performing minimization step: 851. Total energy = 1.605e+04 kcal/mol (1.604e+04 without restraints) Performing minimization step: 852. Total energy = 1.604e+04 kcal/mol (1.603e+04 without restraints) Performing minimization step: 853. Total energy = 1.602e+04 kcal/mol (1.601e+04 without restraints) Performing minimization step: 854. Total energy = 1.6e+04 kcal/mol (1.599e+04 without restraints) Performing minimization step: 855. Total energy = 1.598e+04 kcal/mol (1.597e+04 without restraints) Performing minimization step: 856. Total energy = 1.596e+04 kcal/mol (1.596e+04 without restraints) Performing minimization step: 857. Total energy = 1.595e+04 kcal/mol (1.594e+04 without restraints) Performing minimization step: 858. Total energy = 1.593e+04 kcal/mol (1.592e+04 without restraints) Performing minimization step: 859. Total energy = 1.591e+04 kcal/mol (1.59e+04 without restraints) Performing minimization step: 860. Total energy = 1.589e+04 kcal/mol (1.589e+04 without restraints) Performing minimization step: 861. Total energy = 1.588e+04 kcal/mol (1.587e+04 without restraints) Performing minimization step: 862. Total energy = 1.586e+04 kcal/mol (1.585e+04 without restraints) Performing minimization step: 863. Total energy = 1.584e+04 kcal/mol (1.583e+04 without restraints) Performing minimization step: 864. Total energy = 1.582e+04 kcal/mol (1.582e+04 without restraints) Performing minimization step: 865. Total energy = 1.581e+04 kcal/mol (1.58e+04 without restraints) Performing minimization step: 866. Total energy = 1.579e+04 kcal/mol (1.578e+04 without restraints) Performing minimization step: 867. Total energy = 1.577e+04 kcal/mol (1.576e+04 without restraints) Performing minimization step: 868. Total energy = 1.575e+04 kcal/mol (1.575e+04 without restraints) Performing minimization step: 869. Total energy = 1.574e+04 kcal/mol (1.573e+04 without restraints) Performing minimization step: 870. Total energy = 1.572e+04 kcal/mol (1.571e+04 without restraints) Performing minimization step: 871. Total energy = 1.57e+04 kcal/mol (1.569e+04 without restraints) Performing minimization step: 872. Total energy = 1.569e+04 kcal/mol (1.568e+04 without restraints) Performing minimization step: 873. Total energy = 1.567e+04 kcal/mol (1.566e+04 without restraints) Performing minimization step: 874. Total energy = 1.565e+04 kcal/mol (1.564e+04 without restraints) Performing minimization step: 875. Total energy = 1.563e+04 kcal/mol (1.563e+04 without restraints) Performing minimization step: 876. Total energy = 1.562e+04 kcal/mol (1.561e+04 without restraints) Performing minimization step: 877. Total energy = 1.56e+04 kcal/mol (1.559e+04 without restraints) Performing minimization step: 878. Total energy = 1.558e+04 kcal/mol (1.557e+04 without restraints) Performing minimization step: 879. Total energy = 1.557e+04 kcal/mol (1.556e+04 without restraints) Performing minimization step: 880. Total energy = 1.555e+04 kcal/mol (1.554e+04 without restraints) Performing minimization step: 881. Total energy = 1.553e+04 kcal/mol (1.552e+04 without restraints) Performing minimization step: 882. Total energy = 1.552e+04 kcal/mol (1.551e+04 without restraints) Performing minimization step: 883. Total energy = 1.55e+04 kcal/mol (1.549e+04 without restraints) Performing minimization step: 884. Total energy = 1.548e+04 kcal/mol (1.547e+04 without restraints) Performing minimization step: 885. Total energy = 1.547e+04 kcal/mol (1.546e+04 without restraints) Performing minimization step: 886. Total energy = 1.545e+04 kcal/mol (1.544e+04 without restraints) Performing minimization step: 887. Total energy = 1.543e+04 kcal/mol (1.542e+04 without restraints) Performing minimization step: 888. Total energy = 1.541e+04 kcal/mol (1.541e+04 without restraints) Performing minimization step: 889. Total energy = 1.54e+04 kcal/mol (1.539e+04 without restraints) Performing minimization step: 890. Total energy = 1.538e+04 kcal/mol (1.537e+04 without restraints) Performing minimization step: 891. Total energy = 1.536e+04 kcal/mol (1.536e+04 without restraints) Performing minimization step: 892. Total energy = 1.535e+04 kcal/mol (1.534e+04 without restraints) Performing minimization step: 893. Total energy = 1.533e+04 kcal/mol (1.532e+04 without restraints) Performing minimization step: 894. Total energy = 1.532e+04 kcal/mol (1.531e+04 without restraints) Performing minimization step: 895. Total energy = 1.53e+04 kcal/mol (1.529e+04 without restraints) Performing minimization step: 896. Total energy = 1.528e+04 kcal/mol (1.527e+04 without restraints) Performing minimization step: 897. Total energy = 1.527e+04 kcal/mol (1.526e+04 without restraints) Performing minimization step: 898. Total energy = 1.525e+04 kcal/mol (1.524e+04 without restraints) Performing minimization step: 899. Total energy = 1.523e+04 kcal/mol (1.522e+04 without restraints) Performing minimization step: 900. Total energy = 1.522e+04 kcal/mol (1.521e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 901. Total energy = 1.52e+04 kcal/mol (1.519e+04 without restraints) Performing minimization step: 902. Total energy = 1.518e+04 kcal/mol (1.518e+04 without restraints) Performing minimization step: 903. Total energy = 1.517e+04 kcal/mol (1.516e+04 without restraints) Performing minimization step: 904. Total energy = 1.515e+04 kcal/mol (1.514e+04 without restraints) Performing minimization step: 905. Total energy = 1.514e+04 kcal/mol (1.513e+04 without restraints) Performing minimization step: 906. Total energy = 1.512e+04 kcal/mol (1.511e+04 without restraints) Performing minimization step: 907. Total energy = 1.51e+04 kcal/mol (1.509e+04 without restraints) Performing minimization step: 908. Total energy = 1.509e+04 kcal/mol (1.508e+04 without restraints) Performing minimization step: 909. Total energy = 1.507e+04 kcal/mol (1.506e+04 without restraints) Performing minimization step: 910. Total energy = 1.505e+04 kcal/mol (1.505e+04 without restraints) Performing minimization step: 911. Total energy = 1.504e+04 kcal/mol (1.503e+04 without restraints) Performing minimization step: 912. Total energy = 1.502e+04 kcal/mol (1.501e+04 without restraints) Performing minimization step: 913. Total energy = 1.501e+04 kcal/mol (1.5e+04 without restraints) Performing minimization step: 914. Total energy = 1.499e+04 kcal/mol (1.498e+04 without restraints) Performing minimization step: 915. Total energy = 1.497e+04 kcal/mol (1.497e+04 without restraints) Performing minimization step: 916. Total energy = 1.496e+04 kcal/mol (1.495e+04 without restraints) Performing minimization step: 917. Total energy = 1.494e+04 kcal/mol (1.493e+04 without restraints) Performing minimization step: 918. Total energy = 1.493e+04 kcal/mol (1.492e+04 without restraints) Performing minimization step: 919. Total energy = 1.491e+04 kcal/mol (1.49e+04 without restraints) Performing minimization step: 920. Total energy = 1.489e+04 kcal/mol (1.489e+04 without restraints) Performing minimization step: 921. Total energy = 1.488e+04 kcal/mol (1.487e+04 without restraints) Performing minimization step: 922. Total energy = 1.486e+04 kcal/mol (1.485e+04 without restraints) Performing minimization step: 923. Total energy = 1.485e+04 kcal/mol (1.484e+04 without restraints) Performing minimization step: 924. Total energy = 1.483e+04 kcal/mol (1.482e+04 without restraints) Performing minimization step: 925. Total energy = 1.482e+04 kcal/mol (1.481e+04 without restraints) Performing minimization step: 926. Total energy = 1.48e+04 kcal/mol (1.479e+04 without restraints) Performing minimization step: 927. Total energy = 1.478e+04 kcal/mol (1.478e+04 without restraints) Performing minimization step: 928. Total energy = 1.477e+04 kcal/mol (1.476e+04 without restraints) Performing minimization step: 929. Total energy = 1.475e+04 kcal/mol (1.475e+04 without restraints) Performing minimization step: 930. Total energy = 1.474e+04 kcal/mol (1.473e+04 without restraints) Performing minimization step: 931. Total energy = 1.472e+04 kcal/mol (1.471e+04 without restraints) Performing minimization step: 932. Total energy = 1.471e+04 kcal/mol (1.47e+04 without restraints) Performing minimization step: 933. Total energy = 1.469e+04 kcal/mol (1.468e+04 without restraints) Performing minimization step: 934. Total energy = 1.468e+04 kcal/mol (1.467e+04 without restraints) Performing minimization step: 935. Total energy = 1.466e+04 kcal/mol (1.465e+04 without restraints) Performing minimization step: 936. Total energy = 1.465e+04 kcal/mol (1.464e+04 without restraints) Performing minimization step: 937. Total energy = 1.463e+04 kcal/mol (1.462e+04 without restraints) Performing minimization step: 938. Total energy = 1.461e+04 kcal/mol (1.461e+04 without restraints) Performing minimization step: 939. Total energy = 1.46e+04 kcal/mol (1.459e+04 without restraints) Performing minimization step: 940. Total energy = 1.458e+04 kcal/mol (1.458e+04 without restraints) Performing minimization step: 941. Total energy = 1.457e+04 kcal/mol (1.456e+04 without restraints) Performing minimization step: 942. Total energy = 1.455e+04 kcal/mol (1.454e+04 without restraints) Performing minimization step: 943. Total energy = 1.454e+04 kcal/mol (1.453e+04 without restraints) Performing minimization step: 944. Total energy = 1.452e+04 kcal/mol (1.451e+04 without restraints) Performing minimization step: 945. Total energy = 1.451e+04 kcal/mol (1.45e+04 without restraints) Performing minimization step: 946. Total energy = 1.449e+04 kcal/mol (1.448e+04 without restraints) Performing minimization step: 947. Total energy = 1.448e+04 kcal/mol (1.447e+04 without restraints) Performing minimization step: 948. Total energy = 1.446e+04 kcal/mol (1.445e+04 without restraints) Performing minimization step: 949. Total energy = 1.445e+04 kcal/mol (1.444e+04 without restraints) Performing minimization step: 950. Total energy = 1.443e+04 kcal/mol (1.442e+04 without restraints) Performing minimization step: 951. Total energy = 1.442e+04 kcal/mol (1.441e+04 without restraints) Performing minimization step: 952. Total energy = 1.44e+04 kcal/mol (1.439e+04 without restraints) Performing minimization step: 953. Total energy = 1.439e+04 kcal/mol (1.438e+04 without restraints) Performing minimization step: 954. Total energy = 1.437e+04 kcal/mol (1.436e+04 without restraints) Performing minimization step: 955. Total energy = 1.436e+04 kcal/mol (1.435e+04 without restraints) Performing minimization step: 956. Total energy = 1.434e+04 kcal/mol (1.433e+04 without restraints) Performing minimization step: 957. Total energy = 1.433e+04 kcal/mol (1.432e+04 without restraints) Performing minimization step: 958. Total energy = 1.431e+04 kcal/mol (1.43e+04 without restraints) Performing minimization step: 959. Total energy = 1.43e+04 kcal/mol (1.429e+04 without restraints) Performing minimization step: 960. Total energy = 1.428e+04 kcal/mol (1.427e+04 without restraints) Performing minimization step: 961. Total energy = 1.427e+04 kcal/mol (1.426e+04 without restraints) Performing minimization step: 962. Total energy = 1.425e+04 kcal/mol (1.425e+04 without restraints) Performing minimization step: 963. Total energy = 1.424e+04 kcal/mol (1.423e+04 without restraints) Performing minimization step: 964. Total energy = 1.422e+04 kcal/mol (1.422e+04 without restraints) Performing minimization step: 965. Total energy = 1.421e+04 kcal/mol (1.42e+04 without restraints) Performing minimization step: 966. Total energy = 1.42e+04 kcal/mol (1.419e+04 without restraints) Performing minimization step: 967. Total energy = 1.418e+04 kcal/mol (1.417e+04 without restraints) Performing minimization step: 968. Total energy = 1.417e+04 kcal/mol (1.416e+04 without restraints) Performing minimization step: 969. Total energy = 1.415e+04 kcal/mol (1.414e+04 without restraints) Performing minimization step: 970. Total energy = 1.414e+04 kcal/mol (1.413e+04 without restraints) Performing minimization step: 971. Total energy = 1.412e+04 kcal/mol (1.411e+04 without restraints) Performing minimization step: 972. Total energy = 1.411e+04 kcal/mol (1.41e+04 without restraints) Performing minimization step: 973. Total energy = 1.409e+04 kcal/mol (1.408e+04 without restraints) Performing minimization step: 974. Total energy = 1.408e+04 kcal/mol (1.407e+04 without restraints) Performing minimization step: 975. Total energy = 1.406e+04 kcal/mol (1.406e+04 without restraints) Performing minimization step: 976. Total energy = 1.405e+04 kcal/mol (1.404e+04 without restraints) Performing minimization step: 977. Total energy = 1.404e+04 kcal/mol (1.403e+04 without restraints) Performing minimization step: 978. Total energy = 1.402e+04 kcal/mol (1.401e+04 without restraints) Performing minimization step: 979. Total energy = 1.401e+04 kcal/mol (1.4e+04 without restraints) Performing minimization step: 980. Total energy = 1.399e+04 kcal/mol (1.398e+04 without restraints) Performing minimization step: 981. Total energy = 1.398e+04 kcal/mol (1.397e+04 without restraints) Performing minimization step: 982. Total energy = 1.396e+04 kcal/mol (1.396e+04 without restraints) Performing minimization step: 983. Total energy = 1.395e+04 kcal/mol (1.394e+04 without restraints) Performing minimization step: 984. Total energy = 1.394e+04 kcal/mol (1.393e+04 without restraints) Performing minimization step: 985. Total energy = 1.392e+04 kcal/mol (1.391e+04 without restraints) Performing minimization step: 986. Total energy = 1.391e+04 kcal/mol (1.39e+04 without restraints) Performing minimization step: 987. Total energy = 1.389e+04 kcal/mol (1.388e+04 without restraints) Performing minimization step: 988. Total energy = 1.388e+04 kcal/mol (1.387e+04 without restraints) Performing minimization step: 989. Total energy = 1.387e+04 kcal/mol (1.386e+04 without restraints) Performing minimization step: 990. Total energy = 1.385e+04 kcal/mol (1.384e+04 without restraints) Performing minimization step: 991. Total energy = 1.384e+04 kcal/mol (1.383e+04 without restraints) Performing minimization step: 992. Total energy = 1.382e+04 kcal/mol (1.381e+04 without restraints) Performing minimization step: 993. Total energy = 1.381e+04 kcal/mol (1.38e+04 without restraints) Performing minimization step: 994. Total energy = 1.379e+04 kcal/mol (1.379e+04 without restraints) Performing minimization step: 995. Total energy = 1.378e+04 kcal/mol (1.377e+04 without restraints) Performing minimization step: 996. Total energy = 1.377e+04 kcal/mol (1.376e+04 without restraints) Performing minimization step: 997. Total energy = 1.375e+04 kcal/mol (1.374e+04 without restraints) Performing minimization step: 998. Total energy = 1.374e+04 kcal/mol (1.373e+04 without restraints) Performing minimization step: 999. Total energy = 1.373e+04 kcal/mol (1.372e+04 without restraints) Performing minimization step: 1000. Total energy = 1.371e+04 kcal/mol (1.37e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 1.37e+04 kcal/mol (1.369e+04 without restraints) Performing minimization step: 1002. Total energy = 1.368e+04 kcal/mol (1.368e+04 without restraints) Performing minimization step: 1003. Total energy = 1.367e+04 kcal/mol (1.366e+04 without restraints) Performing minimization step: 1004. Total energy = 1.366e+04 kcal/mol (1.365e+04 without restraints) Performing minimization step: 1005. Total energy = 1.364e+04 kcal/mol (1.363e+04 without restraints) Performing minimization step: 1006. Total energy = 1.363e+04 kcal/mol (1.362e+04 without restraints) Performing minimization step: 1007. Total energy = 1.362e+04 kcal/mol (1.361e+04 without restraints) Performing minimization step: 1008. Total energy = 1.36e+04 kcal/mol (1.359e+04 without restraints) Performing minimization step: 1009. Total energy = 1.359e+04 kcal/mol (1.358e+04 without restraints) Performing minimization step: 1010. Total energy = 1.357e+04 kcal/mol (1.357e+04 without restraints) Performing minimization step: 1011. Total energy = 1.356e+04 kcal/mol (1.355e+04 without restraints) Performing minimization step: 1012. Total energy = 1.355e+04 kcal/mol (1.354e+04 without restraints) Performing minimization step: 1013. Total energy = 1.353e+04 kcal/mol (1.353e+04 without restraints) Performing minimization step: 1014. Total energy = 1.352e+04 kcal/mol (1.351e+04 without restraints) Performing minimization step: 1015. Total energy = 1.351e+04 kcal/mol (1.35e+04 without restraints) Performing minimization step: 1016. Total energy = 1.349e+04 kcal/mol (1.349e+04 without restraints) Performing minimization step: 1017. Total energy = 1.348e+04 kcal/mol (1.347e+04 without restraints) Performing minimization step: 1018. Total energy = 1.347e+04 kcal/mol (1.346e+04 without restraints) Performing minimization step: 1019. Total energy = 1.345e+04 kcal/mol (1.344e+04 without restraints) Performing minimization step: 1020. Total energy = 1.344e+04 kcal/mol (1.343e+04 without restraints) Performing minimization step: 1021. Total energy = 1.343e+04 kcal/mol (1.342e+04 without restraints) Performing minimization step: 1022. Total energy = 1.341e+04 kcal/mol (1.34e+04 without restraints) Performing minimization step: 1023. Total energy = 1.34e+04 kcal/mol (1.339e+04 without restraints) Performing minimization step: 1024. Total energy = 1.339e+04 kcal/mol (1.338e+04 without restraints) Performing minimization step: 1025. Total energy = 1.337e+04 kcal/mol (1.336e+04 without restraints) Performing minimization step: 1026. Total energy = 1.336e+04 kcal/mol (1.335e+04 without restraints) Performing minimization step: 1027. Total energy = 1.335e+04 kcal/mol (1.334e+04 without restraints) Performing minimization step: 1028. Total energy = 1.333e+04 kcal/mol (1.333e+04 without restraints) Performing minimization step: 1029. Total energy = 1.332e+04 kcal/mol (1.331e+04 without restraints) Performing minimization step: 1030. Total energy = 1.331e+04 kcal/mol (1.33e+04 without restraints) Performing minimization step: 1031. Total energy = 1.329e+04 kcal/mol (1.329e+04 without restraints) Performing minimization step: 1032. Total energy = 1.328e+04 kcal/mol (1.327e+04 without restraints) Performing minimization step: 1033. Total energy = 1.327e+04 kcal/mol (1.326e+04 without restraints) Performing minimization step: 1034. Total energy = 1.325e+04 kcal/mol (1.325e+04 without restraints) Performing minimization step: 1035. Total energy = 1.324e+04 kcal/mol (1.323e+04 without restraints) Performing minimization step: 1036. Total energy = 1.323e+04 kcal/mol (1.322e+04 without restraints) Performing minimization step: 1037. Total energy = 1.322e+04 kcal/mol (1.321e+04 without restraints) Performing minimization step: 1038. Total energy = 1.32e+04 kcal/mol (1.319e+04 without restraints) Performing minimization step: 1039. Total energy = 1.319e+04 kcal/mol (1.318e+04 without restraints) Performing minimization step: 1040. Total energy = 1.318e+04 kcal/mol (1.317e+04 without restraints) Performing minimization step: 1041. Total energy = 1.316e+04 kcal/mol (1.316e+04 without restraints) Performing minimization step: 1042. Total energy = 1.315e+04 kcal/mol (1.314e+04 without restraints) Performing minimization step: 1043. Total energy = 1.314e+04 kcal/mol (1.313e+04 without restraints) Performing minimization step: 1044. Total energy = 1.313e+04 kcal/mol (1.312e+04 without restraints) Performing minimization step: 1045. Total energy = 1.311e+04 kcal/mol (1.31e+04 without restraints) Performing minimization step: 1046. Total energy = 1.31e+04 kcal/mol (1.309e+04 without restraints) Performing minimization step: 1047. Total energy = 1.309e+04 kcal/mol (1.308e+04 without restraints) Performing minimization step: 1048. Total energy = 1.307e+04 kcal/mol (1.307e+04 without restraints) Performing minimization step: 1049. Total energy = 1.306e+04 kcal/mol (1.305e+04 without restraints) Performing minimization step: 1050. Total energy = 1.305e+04 kcal/mol (1.304e+04 without restraints) Performing minimization step: 1051. Total energy = 1.304e+04 kcal/mol (1.303e+04 without restraints) Performing minimization step: 1052. Total energy = 1.302e+04 kcal/mol (1.301e+04 without restraints) Performing minimization step: 1053. Total energy = 1.301e+04 kcal/mol (1.3e+04 without restraints) Performing minimization step: 1054. Total energy = 1.3e+04 kcal/mol (1.299e+04 without restraints) Performing minimization step: 1055. Total energy = 1.299e+04 kcal/mol (1.298e+04 without restraints) Performing minimization step: 1056. Total energy = 1.297e+04 kcal/mol (1.296e+04 without restraints) Performing minimization step: 1057. Total energy = 1.296e+04 kcal/mol (1.295e+04 without restraints) Performing minimization step: 1058. Total energy = 1.295e+04 kcal/mol (1.294e+04 without restraints) Performing minimization step: 1059. Total energy = 1.293e+04 kcal/mol (1.293e+04 without restraints) Performing minimization step: 1060. Total energy = 1.292e+04 kcal/mol (1.291e+04 without restraints) Performing minimization step: 1061. Total energy = 1.291e+04 kcal/mol (1.29e+04 without restraints) Performing minimization step: 1062. Total energy = 1.29e+04 kcal/mol (1.289e+04 without restraints) Performing minimization step: 1063. Total energy = 1.288e+04 kcal/mol (1.288e+04 without restraints) Performing minimization step: 1064. Total energy = 1.287e+04 kcal/mol (1.286e+04 without restraints) Performing minimization step: 1065. Total energy = 1.286e+04 kcal/mol (1.285e+04 without restraints) Performing minimization step: 1066. Total energy = 1.285e+04 kcal/mol (1.284e+04 without restraints) Performing minimization step: 1067. Total energy = 1.284e+04 kcal/mol (1.283e+04 without restraints) Performing minimization step: 1068. Total energy = 1.282e+04 kcal/mol (1.281e+04 without restraints) Performing minimization step: 1069. Total energy = 1.281e+04 kcal/mol (1.28e+04 without restraints) Performing minimization step: 1070. Total energy = 1.28e+04 kcal/mol (1.279e+04 without restraints) Performing minimization step: 1071. Total energy = 1.279e+04 kcal/mol (1.278e+04 without restraints) Performing minimization step: 1072. Total energy = 1.277e+04 kcal/mol (1.277e+04 without restraints) Performing minimization step: 1073. Total energy = 1.276e+04 kcal/mol (1.275e+04 without restraints) Performing minimization step: 1074. Total energy = 1.275e+04 kcal/mol (1.274e+04 without restraints) Performing minimization step: 1075. Total energy = 1.274e+04 kcal/mol (1.273e+04 without restraints) Performing minimization step: 1076. Total energy = 1.272e+04 kcal/mol (1.272e+04 without restraints) Performing minimization step: 1077. Total energy = 1.271e+04 kcal/mol (1.27e+04 without restraints) Performing minimization step: 1078. Total energy = 1.27e+04 kcal/mol (1.269e+04 without restraints) Performing minimization step: 1079. Total energy = 1.269e+04 kcal/mol (1.268e+04 without restraints) Performing minimization step: 1080. Total energy = 1.268e+04 kcal/mol (1.267e+04 without restraints) Performing minimization step: 1081. Total energy = 1.266e+04 kcal/mol (1.266e+04 without restraints) Performing minimization step: 1082. Total energy = 1.265e+04 kcal/mol (1.264e+04 without restraints) Performing minimization step: 1083. Total energy = 1.264e+04 kcal/mol (1.263e+04 without restraints) Performing minimization step: 1084. Total energy = 1.263e+04 kcal/mol (1.262e+04 without restraints) Performing minimization step: 1085. Total energy = 1.262e+04 kcal/mol (1.261e+04 without restraints) Performing minimization step: 1086. Total energy = 1.26e+04 kcal/mol (1.26e+04 without restraints) Performing minimization step: 1087. Total energy = 1.259e+04 kcal/mol (1.258e+04 without restraints) Performing minimization step: 1088. Total energy = 1.258e+04 kcal/mol (1.257e+04 without restraints) Performing minimization step: 1089. Total energy = 1.257e+04 kcal/mol (1.256e+04 without restraints) Performing minimization step: 1090. Total energy = 1.256e+04 kcal/mol (1.255e+04 without restraints) Performing minimization step: 1091. Total energy = 1.254e+04 kcal/mol (1.254e+04 without restraints) Performing minimization step: 1092. Total energy = 1.253e+04 kcal/mol (1.252e+04 without restraints) Performing minimization step: 1093. Total energy = 1.252e+04 kcal/mol (1.251e+04 without restraints) Performing minimization step: 1094. Total energy = 1.251e+04 kcal/mol (1.25e+04 without restraints) Performing minimization step: 1095. Total energy = 1.25e+04 kcal/mol (1.249e+04 without restraints) Performing minimization step: 1096. Total energy = 1.249e+04 kcal/mol (1.248e+04 without restraints) Performing minimization step: 1097. Total energy = 1.247e+04 kcal/mol (1.247e+04 without restraints) Performing minimization step: 1098. Total energy = 1.246e+04 kcal/mol (1.245e+04 without restraints) Performing minimization step: 1099. Total energy = 1.245e+04 kcal/mol (1.244e+04 without restraints) Performing minimization step: 1100. Total energy = 1.244e+04 kcal/mol (1.243e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 1.243e+04 kcal/mol (1.242e+04 without restraints) Performing minimization step: 1102. Total energy = 1.242e+04 kcal/mol (1.241e+04 without restraints) Performing minimization step: 1103. Total energy = 1.24e+04 kcal/mol (1.24e+04 without restraints) Performing minimization step: 1104. Total energy = 1.239e+04 kcal/mol (1.238e+04 without restraints) Performing minimization step: 1105. Total energy = 1.238e+04 kcal/mol (1.237e+04 without restraints) Performing minimization step: 1106. Total energy = 1.237e+04 kcal/mol (1.236e+04 without restraints) Performing minimization step: 1107. Total energy = 1.236e+04 kcal/mol (1.235e+04 without restraints) Performing minimization step: 1108. Total energy = 1.235e+04 kcal/mol (1.234e+04 without restraints) Performing minimization step: 1109. Total energy = 1.233e+04 kcal/mol (1.233e+04 without restraints) Performing minimization step: 1110. Total energy = 1.232e+04 kcal/mol (1.231e+04 without restraints) Performing minimization step: 1111. Total energy = 1.231e+04 kcal/mol (1.23e+04 without restraints) Performing minimization step: 1112. Total energy = 1.23e+04 kcal/mol (1.229e+04 without restraints) Performing minimization step: 1113. Total energy = 1.229e+04 kcal/mol (1.228e+04 without restraints) Performing minimization step: 1114. Total energy = 1.228e+04 kcal/mol (1.227e+04 without restraints) Performing minimization step: 1115. Total energy = 1.227e+04 kcal/mol (1.226e+04 without restraints) Performing minimization step: 1116. Total energy = 1.225e+04 kcal/mol (1.225e+04 without restraints) Performing minimization step: 1117. Total energy = 1.224e+04 kcal/mol (1.223e+04 without restraints) Performing minimization step: 1118. Total energy = 1.223e+04 kcal/mol (1.222e+04 without restraints) Performing minimization step: 1119. Total energy = 1.222e+04 kcal/mol (1.221e+04 without restraints) Performing minimization step: 1120. Total energy = 1.221e+04 kcal/mol (1.22e+04 without restraints) Performing minimization step: 1121. Total energy = 1.22e+04 kcal/mol (1.219e+04 without restraints) Performing minimization step: 1122. Total energy = 1.219e+04 kcal/mol (1.218e+04 without restraints) Performing minimization step: 1123. Total energy = 1.217e+04 kcal/mol (1.217e+04 without restraints) Performing minimization step: 1124. Total energy = 1.216e+04 kcal/mol (1.216e+04 without restraints) Performing minimization step: 1125. Total energy = 1.215e+04 kcal/mol (1.214e+04 without restraints) Performing minimization step: 1126. Total energy = 1.214e+04 kcal/mol (1.213e+04 without restraints) Performing minimization step: 1127. Total energy = 1.213e+04 kcal/mol (1.212e+04 without restraints) Performing minimization step: 1128. Total energy = 1.212e+04 kcal/mol (1.211e+04 without restraints) Performing minimization step: 1129. Total energy = 1.211e+04 kcal/mol (1.21e+04 without restraints) Performing minimization step: 1130. Total energy = 1.21e+04 kcal/mol (1.209e+04 without restraints) Performing minimization step: 1131. Total energy = 1.209e+04 kcal/mol (1.208e+04 without restraints) Performing minimization step: 1132. Total energy = 1.207e+04 kcal/mol (1.207e+04 without restraints) Performing minimization step: 1133. Total energy = 1.206e+04 kcal/mol (1.206e+04 without restraints) Performing minimization step: 1134. Total energy = 1.205e+04 kcal/mol (1.204e+04 without restraints) Performing minimization step: 1135. Total energy = 1.204e+04 kcal/mol (1.203e+04 without restraints) Performing minimization step: 1136. Total energy = 1.203e+04 kcal/mol (1.202e+04 without restraints) Performing minimization step: 1137. Total energy = 1.202e+04 kcal/mol (1.201e+04 without restraints) Performing minimization step: 1138. Total energy = 1.201e+04 kcal/mol (1.2e+04 without restraints) Performing minimization step: 1139. Total energy = 1.2e+04 kcal/mol (1.199e+04 without restraints) Performing minimization step: 1140. Total energy = 1.199e+04 kcal/mol (1.198e+04 without restraints) Performing minimization step: 1141. Total energy = 1.198e+04 kcal/mol (1.197e+04 without restraints) Performing minimization step: 1142. Total energy = 1.196e+04 kcal/mol (1.196e+04 without restraints) Performing minimization step: 1143. Total energy = 1.195e+04 kcal/mol (1.195e+04 without restraints) Performing minimization step: 1144. Total energy = 1.194e+04 kcal/mol (1.194e+04 without restraints) Performing minimization step: 1145. Total energy = 1.193e+04 kcal/mol (1.192e+04 without restraints) Performing minimization step: 1146. Total energy = 1.192e+04 kcal/mol (1.191e+04 without restraints) Performing minimization step: 1147. Total energy = 1.191e+04 kcal/mol (1.19e+04 without restraints) Performing minimization step: 1148. Total energy = 1.19e+04 kcal/mol (1.189e+04 without restraints) Performing minimization step: 1149. Total energy = 1.189e+04 kcal/mol (1.188e+04 without restraints) Performing minimization step: 1150. Total energy = 1.188e+04 kcal/mol (1.187e+04 without restraints) Performing minimization step: 1151. Total energy = 1.187e+04 kcal/mol (1.186e+04 without restraints) Performing minimization step: 1152. Total energy = 1.186e+04 kcal/mol (1.185e+04 without restraints) Performing minimization step: 1153. Total energy = 1.185e+04 kcal/mol (1.184e+04 without restraints) Performing minimization step: 1154. Total energy = 1.184e+04 kcal/mol (1.183e+04 without restraints) Performing minimization step: 1155. Total energy = 1.182e+04 kcal/mol (1.182e+04 without restraints) Performing minimization step: 1156. Total energy = 1.181e+04 kcal/mol (1.181e+04 without restraints) Performing minimization step: 1157. Total energy = 1.18e+04 kcal/mol (1.18e+04 without restraints) Performing minimization step: 1158. Total energy = 1.179e+04 kcal/mol (1.179e+04 without restraints) Performing minimization step: 1159. Total energy = 1.178e+04 kcal/mol (1.177e+04 without restraints) Performing minimization step: 1160. Total energy = 1.177e+04 kcal/mol (1.176e+04 without restraints) Performing minimization step: 1161. Total energy = 1.176e+04 kcal/mol (1.175e+04 without restraints) Performing minimization step: 1162. Total energy = 1.175e+04 kcal/mol (1.174e+04 without restraints) Performing minimization step: 1163. Total energy = 1.174e+04 kcal/mol (1.173e+04 without restraints) Performing minimization step: 1164. Total energy = 1.173e+04 kcal/mol (1.172e+04 without restraints) Performing minimization step: 1165. Total energy = 1.172e+04 kcal/mol (1.171e+04 without restraints) Performing minimization step: 1166. Total energy = 1.171e+04 kcal/mol (1.17e+04 without restraints) Performing minimization step: 1167. Total energy = 1.17e+04 kcal/mol (1.169e+04 without restraints) Performing minimization step: 1168. Total energy = 1.169e+04 kcal/mol (1.168e+04 without restraints) Performing minimization step: 1169. Total energy = 1.168e+04 kcal/mol (1.167e+04 without restraints) Performing minimization step: 1170. Total energy = 1.167e+04 kcal/mol (1.166e+04 without restraints) Performing minimization step: 1171. Total energy = 1.166e+04 kcal/mol (1.165e+04 without restraints) Performing minimization step: 1172. Total energy = 1.165e+04 kcal/mol (1.164e+04 without restraints) Performing minimization step: 1173. Total energy = 1.164e+04 kcal/mol (1.163e+04 without restraints) Performing minimization step: 1174. Total energy = 1.163e+04 kcal/mol (1.162e+04 without restraints) Performing minimization step: 1175. Total energy = 1.162e+04 kcal/mol (1.161e+04 without restraints) Performing minimization step: 1176. Total energy = 1.161e+04 kcal/mol (1.16e+04 without restraints) Performing minimization step: 1177. Total energy = 1.16e+04 kcal/mol (1.159e+04 without restraints) Performing minimization step: 1178. Total energy = 1.159e+04 kcal/mol (1.158e+04 without restraints) Performing minimization step: 1179. Total energy = 1.157e+04 kcal/mol (1.157e+04 without restraints) Performing minimization step: 1180. Total energy = 1.156e+04 kcal/mol (1.156e+04 without restraints) Performing minimization step: 1181. Total energy = 1.155e+04 kcal/mol (1.155e+04 without restraints) Performing minimization step: 1182. Total energy = 1.154e+04 kcal/mol (1.154e+04 without restraints) Performing minimization step: 1183. Total energy = 1.153e+04 kcal/mol (1.153e+04 without restraints) Performing minimization step: 1184. Total energy = 1.152e+04 kcal/mol (1.152e+04 without restraints) Performing minimization step: 1185. Total energy = 1.151e+04 kcal/mol (1.151e+04 without restraints) Performing minimization step: 1186. Total energy = 1.15e+04 kcal/mol (1.15e+04 without restraints) Performing minimization step: 1187. Total energy = 1.149e+04 kcal/mol (1.149e+04 without restraints) Performing minimization step: 1188. Total energy = 1.148e+04 kcal/mol (1.148e+04 without restraints) Performing minimization step: 1189. Total energy = 1.147e+04 kcal/mol (1.147e+04 without restraints) Performing minimization step: 1190. Total energy = 1.146e+04 kcal/mol (1.146e+04 without restraints) Performing minimization step: 1191. Total energy = 1.145e+04 kcal/mol (1.145e+04 without restraints) Performing minimization step: 1192. Total energy = 1.144e+04 kcal/mol (1.144e+04 without restraints) Performing minimization step: 1193. Total energy = 1.143e+04 kcal/mol (1.143e+04 without restraints) Performing minimization step: 1194. Total energy = 1.142e+04 kcal/mol (1.142e+04 without restraints) Performing minimization step: 1195. Total energy = 1.141e+04 kcal/mol (1.141e+04 without restraints) Performing minimization step: 1196. Total energy = 1.14e+04 kcal/mol (1.14e+04 without restraints) Performing minimization step: 1197. Total energy = 1.139e+04 kcal/mol (1.139e+04 without restraints) Performing minimization step: 1198. Total energy = 1.138e+04 kcal/mol (1.138e+04 without restraints) Performing minimization step: 1199. Total energy = 1.137e+04 kcal/mol (1.137e+04 without restraints) Performing minimization step: 1200. Total energy = 1.136e+04 kcal/mol (1.136e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 1.135e+04 kcal/mol (1.135e+04 without restraints) Performing minimization step: 1202. Total energy = 1.135e+04 kcal/mol (1.134e+04 without restraints) Performing minimization step: 1203. Total energy = 1.134e+04 kcal/mol (1.133e+04 without restraints) Performing minimization step: 1204. Total energy = 1.133e+04 kcal/mol (1.132e+04 without restraints) Performing minimization step: 1205. Total energy = 1.132e+04 kcal/mol (1.131e+04 without restraints) Performing minimization step: 1206. Total energy = 1.131e+04 kcal/mol (1.13e+04 without restraints) Performing minimization step: 1207. Total energy = 1.13e+04 kcal/mol (1.129e+04 without restraints) Performing minimization step: 1208. Total energy = 1.129e+04 kcal/mol (1.128e+04 without restraints) Performing minimization step: 1209. Total energy = 1.128e+04 kcal/mol (1.127e+04 without restraints) Performing minimization step: 1210. Total energy = 1.127e+04 kcal/mol (1.126e+04 without restraints) Performing minimization step: 1211. Total energy = 1.126e+04 kcal/mol (1.125e+04 without restraints) Performing minimization step: 1212. Total energy = 1.125e+04 kcal/mol (1.124e+04 without restraints) Performing minimization step: 1213. Total energy = 1.124e+04 kcal/mol (1.123e+04 without restraints) Performing minimization step: 1214. Total energy = 1.123e+04 kcal/mol (1.122e+04 without restraints) Performing minimization step: 1215. Total energy = 1.122e+04 kcal/mol (1.121e+04 without restraints) Performing minimization step: 1216. Total energy = 1.121e+04 kcal/mol (1.12e+04 without restraints) Performing minimization step: 1217. Total energy = 1.12e+04 kcal/mol (1.119e+04 without restraints) Performing minimization step: 1218. Total energy = 1.119e+04 kcal/mol (1.118e+04 without restraints) Performing minimization step: 1219. Total energy = 1.118e+04 kcal/mol (1.117e+04 without restraints) Performing minimization step: 1220. Total energy = 1.117e+04 kcal/mol (1.116e+04 without restraints) Performing minimization step: 1221. Total energy = 1.116e+04 kcal/mol (1.115e+04 without restraints) Performing minimization step: 1222. Total energy = 1.115e+04 kcal/mol (1.115e+04 without restraints) Performing minimization step: 1223. Total energy = 1.114e+04 kcal/mol (1.114e+04 without restraints) Performing minimization step: 1224. Total energy = 1.113e+04 kcal/mol (1.113e+04 without restraints) Performing minimization step: 1225. Total energy = 1.112e+04 kcal/mol (1.112e+04 without restraints) Performing minimization step: 1226. Total energy = 1.112e+04 kcal/mol (1.111e+04 without restraints) Performing minimization step: 1227. Total energy = 1.111e+04 kcal/mol (1.11e+04 without restraints) Performing minimization step: 1228. Total energy = 1.11e+04 kcal/mol (1.109e+04 without restraints) Performing minimization step: 1229. Total energy = 1.109e+04 kcal/mol (1.108e+04 without restraints) Performing minimization step: 1230. Total energy = 1.108e+04 kcal/mol (1.107e+04 without restraints) Performing minimization step: 1231. Total energy = 1.107e+04 kcal/mol (1.106e+04 without restraints) Performing minimization step: 1232. Total energy = 1.106e+04 kcal/mol (1.105e+04 without restraints) Performing minimization step: 1233. Total energy = 1.105e+04 kcal/mol (1.104e+04 without restraints) Performing minimization step: 1234. Total energy = 1.104e+04 kcal/mol (1.103e+04 without restraints) Performing minimization step: 1235. Total energy = 1.103e+04 kcal/mol (1.102e+04 without restraints) Performing minimization step: 1236. Total energy = 1.102e+04 kcal/mol (1.101e+04 without restraints) Performing minimization step: 1237. Total energy = 1.101e+04 kcal/mol (1.101e+04 without restraints) Performing minimization step: 1238. Total energy = 1.1e+04 kcal/mol (1.1e+04 without restraints) Performing minimization step: 1239. Total energy = 1.099e+04 kcal/mol (1.099e+04 without restraints) Performing minimization step: 1240. Total energy = 1.099e+04 kcal/mol (1.098e+04 without restraints) Performing minimization step: 1241. Total energy = 1.098e+04 kcal/mol (1.097e+04 without restraints) Performing minimization step: 1242. Total energy = 1.097e+04 kcal/mol (1.096e+04 without restraints) Performing minimization step: 1243. Total energy = 1.096e+04 kcal/mol (1.095e+04 without restraints) Performing minimization step: 1244. Total energy = 1.095e+04 kcal/mol (1.094e+04 without restraints) Performing minimization step: 1245. Total energy = 1.094e+04 kcal/mol (1.093e+04 without restraints) Performing minimization step: 1246. Total energy = 1.093e+04 kcal/mol (1.092e+04 without restraints) Performing minimization step: 1247. Total energy = 1.092e+04 kcal/mol (1.091e+04 without restraints) Performing minimization step: 1248. Total energy = 1.091e+04 kcal/mol (1.091e+04 without restraints) Performing minimization step: 1249. Total energy = 1.09e+04 kcal/mol (1.09e+04 without restraints) Performing minimization step: 1250. Total energy = 1.089e+04 kcal/mol (1.089e+04 without restraints) Performing minimization step: 1251. Total energy = 1.089e+04 kcal/mol (1.088e+04 without restraints) Performing minimization step: 1252. Total energy = 1.088e+04 kcal/mol (1.087e+04 without restraints) Performing minimization step: 1253. Total energy = 1.087e+04 kcal/mol (1.086e+04 without restraints) Performing minimization step: 1254. Total energy = 1.086e+04 kcal/mol (1.085e+04 without restraints) Performing minimization step: 1255. Total energy = 1.085e+04 kcal/mol (1.084e+04 without restraints) Performing minimization step: 1256. Total energy = 1.084e+04 kcal/mol (1.083e+04 without restraints) Performing minimization step: 1257. Total energy = 1.083e+04 kcal/mol (1.082e+04 without restraints) Performing minimization step: 1258. Total energy = 1.082e+04 kcal/mol (1.082e+04 without restraints) Performing minimization step: 1259. Total energy = 1.081e+04 kcal/mol (1.081e+04 without restraints) Performing minimization step: 1260. Total energy = 1.081e+04 kcal/mol (1.08e+04 without restraints) Performing minimization step: 1261. Total energy = 1.08e+04 kcal/mol (1.079e+04 without restraints) Performing minimization step: 1262. Total energy = 1.079e+04 kcal/mol (1.078e+04 without restraints) Performing minimization step: 1263. Total energy = 1.078e+04 kcal/mol (1.077e+04 without restraints) Performing minimization step: 1264. Total energy = 1.077e+04 kcal/mol (1.076e+04 without restraints) Performing minimization step: 1265. Total energy = 1.076e+04 kcal/mol (1.075e+04 without restraints) Performing minimization step: 1266. Total energy = 1.075e+04 kcal/mol (1.075e+04 without restraints) Performing minimization step: 1267. Total energy = 1.074e+04 kcal/mol (1.074e+04 without restraints) Performing minimization step: 1268. Total energy = 1.074e+04 kcal/mol (1.073e+04 without restraints) Performing minimization step: 1269. Total energy = 1.073e+04 kcal/mol (1.072e+04 without restraints) Performing minimization step: 1270. Total energy = 1.072e+04 kcal/mol (1.071e+04 without restraints) Performing minimization step: 1271. Total energy = 1.071e+04 kcal/mol (1.07e+04 without restraints) Performing minimization step: 1272. Total energy = 1.07e+04 kcal/mol (1.069e+04 without restraints) Performing minimization step: 1273. Total energy = 1.069e+04 kcal/mol (1.069e+04 without restraints) Performing minimization step: 1274. Total energy = 1.068e+04 kcal/mol (1.068e+04 without restraints) Performing minimization step: 1275. Total energy = 1.068e+04 kcal/mol (1.067e+04 without restraints) Performing minimization step: 1276. Total energy = 1.067e+04 kcal/mol (1.066e+04 without restraints) Performing minimization step: 1277. Total energy = 1.066e+04 kcal/mol (1.065e+04 without restraints) Performing minimization step: 1278. Total energy = 1.065e+04 kcal/mol (1.064e+04 without restraints) Performing minimization step: 1279. Total energy = 1.064e+04 kcal/mol (1.063e+04 without restraints) Performing minimization step: 1280. Total energy = 1.063e+04 kcal/mol (1.063e+04 without restraints) Performing minimization step: 1281. Total energy = 1.062e+04 kcal/mol (1.062e+04 without restraints) Performing minimization step: 1282. Total energy = 1.062e+04 kcal/mol (1.061e+04 without restraints) Performing minimization step: 1283. Total energy = 1.061e+04 kcal/mol (1.06e+04 without restraints) Performing minimization step: 1284. Total energy = 1.06e+04 kcal/mol (1.059e+04 without restraints) Performing minimization step: 1285. Total energy = 1.059e+04 kcal/mol (1.058e+04 without restraints) Performing minimization step: 1286. Total energy = 1.058e+04 kcal/mol (1.057e+04 without restraints) Performing minimization step: 1287. Total energy = 1.057e+04 kcal/mol (1.057e+04 without restraints) Performing minimization step: 1288. Total energy = 1.057e+04 kcal/mol (1.056e+04 without restraints) Performing minimization step: 1289. Total energy = 1.056e+04 kcal/mol (1.055e+04 without restraints) Performing minimization step: 1290. Total energy = 1.055e+04 kcal/mol (1.054e+04 without restraints) Performing minimization step: 1291. Total energy = 1.054e+04 kcal/mol (1.053e+04 without restraints) Performing minimization step: 1292. Total energy = 1.053e+04 kcal/mol (1.052e+04 without restraints) Performing minimization step: 1293. Total energy = 1.052e+04 kcal/mol (1.052e+04 without restraints) Performing minimization step: 1294. Total energy = 1.052e+04 kcal/mol (1.051e+04 without restraints) Performing minimization step: 1295. Total energy = 1.051e+04 kcal/mol (1.05e+04 without restraints) Performing minimization step: 1296. Total energy = 1.05e+04 kcal/mol (1.049e+04 without restraints) Performing minimization step: 1297. Total energy = 1.049e+04 kcal/mol (1.048e+04 without restraints) Performing minimization step: 1298. Total energy = 1.048e+04 kcal/mol (1.048e+04 without restraints) Performing minimization step: 1299. Total energy = 1.047e+04 kcal/mol (1.047e+04 without restraints) Performing minimization step: 1300. Total energy = 1.047e+04 kcal/mol (1.046e+04 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 1.046e+04 kcal/mol (1.045e+04 without restraints) Performing minimization step: 1302. Total energy = 1.045e+04 kcal/mol (1.044e+04 without restraints) Performing minimization step: 1303. Total energy = 1.044e+04 kcal/mol (1.043e+04 without restraints) Performing minimization step: 1304. Total energy = 1.043e+04 kcal/mol (1.043e+04 without restraints) Performing minimization step: 1305. Total energy = 1.043e+04 kcal/mol (1.042e+04 without restraints) Performing minimization step: 1306. Total energy = 1.042e+04 kcal/mol (1.041e+04 without restraints) Performing minimization step: 1307. Total energy = 1.041e+04 kcal/mol (1.04e+04 without restraints) Performing minimization step: 1308. Total energy = 1.04e+04 kcal/mol (1.039e+04 without restraints) Performing minimization step: 1309. Total energy = 1.039e+04 kcal/mol (1.039e+04 without restraints) Performing minimization step: 1310. Total energy = 1.039e+04 kcal/mol (1.038e+04 without restraints) Performing minimization step: 1311. Total energy = 1.038e+04 kcal/mol (1.037e+04 without restraints) Performing minimization step: 1312. Total energy = 1.037e+04 kcal/mol (1.036e+04 without restraints) Performing minimization step: 1313. Total energy = 1.036e+04 kcal/mol (1.035e+04 without restraints) Performing minimization step: 1314. Total energy = 1.035e+04 kcal/mol (1.035e+04 without restraints) Performing minimization step: 1315. Total energy = 1.035e+04 kcal/mol (1.034e+04 without restraints) Performing minimization step: 1316. Total energy = 1.034e+04 kcal/mol (1.033e+04 without restraints) Performing minimization step: 1317. Total energy = 1.033e+04 kcal/mol (1.032e+04 without restraints) Performing minimization step: 1318. Total energy = 1.032e+04 kcal/mol (1.031e+04 without restraints) Performing minimization step: 1319. Total energy = 1.031e+04 kcal/mol (1.031e+04 without restraints) Performing minimization step: 1320. Total energy = 1.031e+04 kcal/mol (1.03e+04 without restraints) Performing minimization step: 1321. Total energy = 1.03e+04 kcal/mol (1.029e+04 without restraints) Performing minimization step: 1322. Total energy = 1.029e+04 kcal/mol (1.028e+04 without restraints) Performing minimization step: 1323. Total energy = 1.028e+04 kcal/mol (1.027e+04 without restraints) Performing minimization step: 1324. Total energy = 1.027e+04 kcal/mol (1.027e+04 without restraints) Performing minimization step: 1325. Total energy = 1.027e+04 kcal/mol (1.026e+04 without restraints) Performing minimization step: 1326. Total energy = 1.026e+04 kcal/mol (1.025e+04 without restraints) Performing minimization step: 1327. Total energy = 1.025e+04 kcal/mol (1.024e+04 without restraints) Performing minimization step: 1328. Total energy = 1.024e+04 kcal/mol (1.024e+04 without restraints) Performing minimization step: 1329. Total energy = 1.024e+04 kcal/mol (1.023e+04 without restraints) Performing minimization step: 1330. Total energy = 1.023e+04 kcal/mol (1.022e+04 without restraints) Performing minimization step: 1331. Total energy = 1.022e+04 kcal/mol (1.021e+04 without restraints) Performing minimization step: 1332. Total energy = 1.021e+04 kcal/mol (1.021e+04 without restraints) Performing minimization step: 1333. Total energy = 1.02e+04 kcal/mol (1.02e+04 without restraints) Performing minimization step: 1334. Total energy = 1.02e+04 kcal/mol (1.019e+04 without restraints) Performing minimization step: 1335. Total energy = 1.019e+04 kcal/mol (1.018e+04 without restraints) Performing minimization step: 1336. Total energy = 1.018e+04 kcal/mol (1.017e+04 without restraints) Performing minimization step: 1337. Total energy = 1.017e+04 kcal/mol (1.017e+04 without restraints) Performing minimization step: 1338. Total energy = 1.017e+04 kcal/mol (1.016e+04 without restraints) Performing minimization step: 1339. Total energy = 1.016e+04 kcal/mol (1.015e+04 without restraints) Performing minimization step: 1340. Total energy = 1.015e+04 kcal/mol (1.014e+04 without restraints) Performing minimization step: 1341. Total energy = 1.014e+04 kcal/mol (1.014e+04 without restraints) Performing minimization step: 1342. Total energy = 1.014e+04 kcal/mol (1.013e+04 without restraints) Performing minimization step: 1343. Total energy = 1.013e+04 kcal/mol (1.012e+04 without restraints) Performing minimization step: 1344. Total energy = 1.012e+04 kcal/mol (1.011e+04 without restraints) Performing minimization step: 1345. Total energy = 1.011e+04 kcal/mol (1.011e+04 without restraints) Performing minimization step: 1346. Total energy = 1.011e+04 kcal/mol (1.01e+04 without restraints) Performing minimization step: 1347. Total energy = 1.01e+04 kcal/mol (1.009e+04 without restraints) Performing minimization step: 1348. Total energy = 1.009e+04 kcal/mol (1.008e+04 without restraints) Performing minimization step: 1349. Total energy = 1.008e+04 kcal/mol (1.008e+04 without restraints) Performing minimization step: 1350. Total energy = 1.008e+04 kcal/mol (1.007e+04 without restraints) Performing minimization step: 1351. Total energy = 1.007e+04 kcal/mol (1.006e+04 without restraints) Performing minimization step: 1352. Total energy = 1.006e+04 kcal/mol (1.005e+04 without restraints) Performing minimization step: 1353. Total energy = 1.005e+04 kcal/mol (1.005e+04 without restraints) Performing minimization step: 1354. Total energy = 1.005e+04 kcal/mol (1.004e+04 without restraints) Performing minimization step: 1355. Total energy = 1.004e+04 kcal/mol (1.003e+04 without restraints) Performing minimization step: 1356. Total energy = 1.003e+04 kcal/mol (1.002e+04 without restraints) Performing minimization step: 1357. Total energy = 1.002e+04 kcal/mol (1.002e+04 without restraints) Performing minimization step: 1358. Total energy = 1.002e+04 kcal/mol (1.001e+04 without restraints) Performing minimization step: 1359. Total energy = 1.001e+04 kcal/mol (1e+04 without restraints) Performing minimization step: 1360. Total energy = 1e+04 kcal/mol (9995 without restraints) Performing minimization step: 1361. Total energy = 9995 kcal/mol (9988 without restraints) Performing minimization step: 1362. Total energy = 9988 kcal/mol (9981 without restraints) Performing minimization step: 1363. Total energy = 9981 kcal/mol (9974 without restraints) Performing minimization step: 1364. Total energy = 9974 kcal/mol (9966 without restraints) Performing minimization step: 1365. Total energy = 9966 kcal/mol (9959 without restraints) Performing minimization step: 1366. Total energy = 9959 kcal/mol (9952 without restraints) Performing minimization step: 1367. Total energy = 9952 kcal/mol (9945 without restraints) Performing minimization step: 1368. Total energy = 9945 kcal/mol (9938 without restraints) Performing minimization step: 1369. Total energy = 9938 kcal/mol (9930 without restraints) Performing minimization step: 1370. Total energy = 9930 kcal/mol (9923 without restraints) Performing minimization step: 1371. Total energy = 9923 kcal/mol (9916 without restraints) Performing minimization step: 1372. Total energy = 9916 kcal/mol (9909 without restraints) Performing minimization step: 1373. Total energy = 9909 kcal/mol (9902 without restraints) Performing minimization step: 1374. Total energy = 9902 kcal/mol (9895 without restraints) Performing minimization step: 1375. Total energy = 9895 kcal/mol (9888 without restraints) Performing minimization step: 1376. Total energy = 9888 kcal/mol (9881 without restraints) Performing minimization step: 1377. Total energy = 9881 kcal/mol (9873 without restraints) Performing minimization step: 1378. Total energy = 9874 kcal/mol (9866 without restraints) Performing minimization step: 1379. Total energy = 9867 kcal/mol (9859 without restraints) Performing minimization step: 1380. Total energy = 9860 kcal/mol (9852 without restraints) Performing minimization step: 1381. Total energy = 9853 kcal/mol (9845 without restraints) Performing minimization step: 1382. Total energy = 9846 kcal/mol (9838 without restraints) Performing minimization step: 1383. Total energy = 9839 kcal/mol (9831 without restraints) Performing minimization step: 1384. Total energy = 9832 kcal/mol (9824 without restraints) Performing minimization step: 1385. Total energy = 9825 kcal/mol (9817 without restraints) Performing minimization step: 1386. Total energy = 9818 kcal/mol (9811 without restraints) Performing minimization step: 1387. Total energy = 9811 kcal/mol (9804 without restraints) Performing minimization step: 1388. Total energy = 9804 kcal/mol (9797 without restraints) Performing minimization step: 1389. Total energy = 9797 kcal/mol (9790 without restraints) Performing minimization step: 1390. Total energy = 9790 kcal/mol (9783 without restraints) Performing minimization step: 1391. Total energy = 9783 kcal/mol (9776 without restraints) Performing minimization step: 1392. Total energy = 9776 kcal/mol (9769 without restraints) Performing minimization step: 1393. Total energy = 9770 kcal/mol (9762 without restraints) Performing minimization step: 1394. Total energy = 9763 kcal/mol (9755 without restraints) Performing minimization step: 1395. Total energy = 9756 kcal/mol (9749 without restraints) Performing minimization step: 1396. Total energy = 9749 kcal/mol (9742 without restraints) Performing minimization step: 1397. Total energy = 9742 kcal/mol (9735 without restraints) Performing minimization step: 1398. Total energy = 9735 kcal/mol (9728 without restraints) Performing minimization step: 1399. Total energy = 9729 kcal/mol (9721 without restraints) Performing minimization step: 1400. Total energy = 9722 kcal/mol (9715 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 9715 kcal/mol (9708 without restraints) Performing minimization step: 1402. Total energy = 9708 kcal/mol (9701 without restraints) Performing minimization step: 1403. Total energy = 9702 kcal/mol (9695 without restraints) Performing minimization step: 1404. Total energy = 9695 kcal/mol (9688 without restraints) Performing minimization step: 1405. Total energy = 9688 kcal/mol (9681 without restraints) Performing minimization step: 1406. Total energy = 9682 kcal/mol (9674 without restraints) Performing minimization step: 1407. Total energy = 9675 kcal/mol (9668 without restraints) Performing minimization step: 1408. Total energy = 9668 kcal/mol (9661 without restraints) Performing minimization step: 1409. Total energy = 9662 kcal/mol (9655 without restraints) Performing minimization step: 1410. Total energy = 9655 kcal/mol (9648 without restraints) Performing minimization step: 1411. Total energy = 9648 kcal/mol (9641 without restraints) Performing minimization step: 1412. Total energy = 9642 kcal/mol (9635 without restraints) Performing minimization step: 1413. Total energy = 9635 kcal/mol (9628 without restraints) Performing minimization step: 1414. Total energy = 9629 kcal/mol (9621 without restraints) Performing minimization step: 1415. Total energy = 9622 kcal/mol (9615 without restraints) Performing minimization step: 1416. Total energy = 9616 kcal/mol (9608 without restraints) Performing minimization step: 1417. Total energy = 9609 kcal/mol (9602 without restraints) Performing minimization step: 1418. Total energy = 9602 kcal/mol (9595 without restraints) Performing minimization step: 1419. Total energy = 9596 kcal/mol (9589 without restraints) Performing minimization step: 1420. Total energy = 9589 kcal/mol (9582 without restraints) Performing minimization step: 1421. Total energy = 9583 kcal/mol (9576 without restraints) Performing minimization step: 1422. Total energy = 9576 kcal/mol (9569 without restraints) Performing minimization step: 1423. Total energy = 9570 kcal/mol (9563 without restraints) Performing minimization step: 1424. Total energy = 9564 kcal/mol (9556 without restraints) Performing minimization step: 1425. Total energy = 9557 kcal/mol (9550 without restraints) Performing minimization step: 1426. Total energy = 9551 kcal/mol (9544 without restraints) Performing minimization step: 1427. Total energy = 9544 kcal/mol (9537 without restraints) Performing minimization step: 1428. Total energy = 9538 kcal/mol (9531 without restraints) Performing minimization step: 1429. Total energy = 9531 kcal/mol (9524 without restraints) Performing minimization step: 1430. Total energy = 9525 kcal/mol (9518 without restraints) Performing minimization step: 1431. Total energy = 9519 kcal/mol (9512 without restraints) Performing minimization step: 1432. Total energy = 9512 kcal/mol (9505 without restraints) Performing minimization step: 1433. Total energy = 9506 kcal/mol (9499 without restraints) Performing minimization step: 1434. Total energy = 9500 kcal/mol (9493 without restraints) Performing minimization step: 1435. Total energy = 9493 kcal/mol (9486 without restraints) Performing minimization step: 1436. Total energy = 9487 kcal/mol (9480 without restraints) Performing minimization step: 1437. Total energy = 9481 kcal/mol (9474 without restraints) Performing minimization step: 1438. Total energy = 9474 kcal/mol (9467 without restraints) Performing minimization step: 1439. Total energy = 9468 kcal/mol (9461 without restraints) Performing minimization step: 1440. Total energy = 9462 kcal/mol (9455 without restraints) Performing minimization step: 1441. Total energy = 9456 kcal/mol (9449 without restraints) Performing minimization step: 1442. Total energy = 9449 kcal/mol (9442 without restraints) Performing minimization step: 1443. Total energy = 9443 kcal/mol (9436 without restraints) Performing minimization step: 1444. Total energy = 9437 kcal/mol (9430 without restraints) Performing minimization step: 1445. Total energy = 9431 kcal/mol (9424 without restraints) Performing minimization step: 1446. Total energy = 9425 kcal/mol (9418 without restraints) Performing minimization step: 1447. Total energy = 9418 kcal/mol (9411 without restraints) Performing minimization step: 1448. Total energy = 9412 kcal/mol (9405 without restraints) Performing minimization step: 1449. Total energy = 9406 kcal/mol (9399 without restraints) Performing minimization step: 1450. Total energy = 9400 kcal/mol (9393 without restraints) Performing minimization step: 1451. Total energy = 9394 kcal/mol (9387 without restraints) Performing minimization step: 1452. Total energy = 9388 kcal/mol (9381 without restraints) Performing minimization step: 1453. Total energy = 9382 kcal/mol (9375 without restraints) Performing minimization step: 1454. Total energy = 9375 kcal/mol (9368 without restraints) Performing minimization step: 1455. Total energy = 9369 kcal/mol (9362 without restraints) Performing minimization step: 1456. Total energy = 9363 kcal/mol (9356 without restraints) Performing minimization step: 1457. Total energy = 9357 kcal/mol (9350 without restraints) Performing minimization step: 1458. Total energy = 9351 kcal/mol (9344 without restraints) Performing minimization step: 1459. Total energy = 9345 kcal/mol (9338 without restraints) Performing minimization step: 1460. Total energy = 9339 kcal/mol (9332 without restraints) Performing minimization step: 1461. Total energy = 9333 kcal/mol (9326 without restraints) Performing minimization step: 1462. Total energy = 9327 kcal/mol (9320 without restraints) Performing minimization step: 1463. Total energy = 9321 kcal/mol (9314 without restraints) Performing minimization step: 1464. Total energy = 9315 kcal/mol (9308 without restraints) Performing minimization step: 1465. Total energy = 9309 kcal/mol (9302 without restraints) Performing minimization step: 1466. Total energy = 9303 kcal/mol (9296 without restraints) Performing minimization step: 1467. Total energy = 9297 kcal/mol (9290 without restraints) Performing minimization step: 1468. Total energy = 9291 kcal/mol (9284 without restraints) Performing minimization step: 1469. Total energy = 9285 kcal/mol (9278 without restraints) Performing minimization step: 1470. Total energy = 9279 kcal/mol (9272 without restraints) Performing minimization step: 1471. Total energy = 9274 kcal/mol (9267 without restraints) Performing minimization step: 1472. Total energy = 9268 kcal/mol (9261 without restraints) Performing minimization step: 1473. Total energy = 9262 kcal/mol (9255 without restraints) Performing minimization step: 1474. Total energy = 9256 kcal/mol (9249 without restraints) Performing minimization step: 1475. Total energy = 9250 kcal/mol (9243 without restraints) Performing minimization step: 1476. Total energy = 9244 kcal/mol (9237 without restraints) Performing minimization step: 1477. Total energy = 9238 kcal/mol (9231 without restraints) Performing minimization step: 1478. Total energy = 9233 kcal/mol (9226 without restraints) Performing minimization step: 1479. Total energy = 9227 kcal/mol (9220 without restraints) Performing minimization step: 1480. Total energy = 9221 kcal/mol (9214 without restraints) Performing minimization step: 1481. Total energy = 9215 kcal/mol (9208 without restraints) Performing minimization step: 1482. Total energy = 9209 kcal/mol (9202 without restraints) Performing minimization step: 1483. Total energy = 9204 kcal/mol (9197 without restraints) Performing minimization step: 1484. Total energy = 9198 kcal/mol (9191 without restraints) Performing minimization step: 1485. Total energy = 9192 kcal/mol (9185 without restraints) Performing minimization step: 1486. Total energy = 9186 kcal/mol (9179 without restraints) Performing minimization step: 1487. Total energy = 9181 kcal/mol (9174 without restraints) Performing minimization step: 1488. Total energy = 9175 kcal/mol (9168 without restraints) Performing minimization step: 1489. Total energy = 9169 kcal/mol (9162 without restraints) Performing minimization step: 1490. Total energy = 9163 kcal/mol (9156 without restraints) Performing minimization step: 1491. Total energy = 9158 kcal/mol (9151 without restraints) Performing minimization step: 1492. Total energy = 9152 kcal/mol (9145 without restraints) Performing minimization step: 1493. Total energy = 9146 kcal/mol (9139 without restraints) Performing minimization step: 1494. Total energy = 9141 kcal/mol (9134 without restraints) Performing minimization step: 1495. Total energy = 9135 kcal/mol (9128 without restraints) Performing minimization step: 1496. Total energy = 9129 kcal/mol (9122 without restraints) Performing minimization step: 1497. Total energy = 9124 kcal/mol (9117 without restraints) Performing minimization step: 1498. Total energy = 9118 kcal/mol (9111 without restraints) Performing minimization step: 1499. Total energy = 9113 kcal/mol (9106 without restraints) Performing minimization step: 1500. Total energy = 9107 kcal/mol (9100 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 9101 kcal/mol (9094 without restraints) Performing minimization step: 1502. Total energy = 9096 kcal/mol (9089 without restraints) Performing minimization step: 1503. Total energy = 9090 kcal/mol (9083 without restraints) Performing minimization step: 1504. Total energy = 9085 kcal/mol (9078 without restraints) Performing minimization step: 1505. Total energy = 9079 kcal/mol (9072 without restraints) Performing minimization step: 1506. Total energy = 9074 kcal/mol (9067 without restraints) Performing minimization step: 1507. Total energy = 9068 kcal/mol (9061 without restraints) Performing minimization step: 1508. Total energy = 9062 kcal/mol (9056 without restraints) Performing minimization step: 1509. Total energy = 9057 kcal/mol (9050 without restraints) Performing minimization step: 1510. Total energy = 9051 kcal/mol (9045 without restraints) Performing minimization step: 1511. Total energy = 9046 kcal/mol (9039 without restraints) Performing minimization step: 1512. Total energy = 9040 kcal/mol (9034 without restraints) Performing minimization step: 1513. Total energy = 9035 kcal/mol (9028 without restraints) Performing minimization step: 1514. Total energy = 9030 kcal/mol (9023 without restraints) Performing minimization step: 1515. Total energy = 9024 kcal/mol (9017 without restraints) Performing minimization step: 1516. Total energy = 9019 kcal/mol (9012 without restraints) Performing minimization step: 1517. Total energy = 9013 kcal/mol (9006 without restraints) Performing minimization step: 1518. Total energy = 9008 kcal/mol (9001 without restraints) Performing minimization step: 1519. Total energy = 9002 kcal/mol (8996 without restraints) Performing minimization step: 1520. Total energy = 8997 kcal/mol (8990 without restraints) Performing minimization step: 1521. Total energy = 8992 kcal/mol (8985 without restraints) Performing minimization step: 1522. Total energy = 8986 kcal/mol (8979 without restraints) Performing minimization step: 1523. Total energy = 8981 kcal/mol (8974 without restraints) Performing minimization step: 1524. Total energy = 8975 kcal/mol (8969 without restraints) Performing minimization step: 1525. Total energy = 8970 kcal/mol (8963 without restraints) Performing minimization step: 1526. Total energy = 8965 kcal/mol (8958 without restraints) Performing minimization step: 1527. Total energy = 8959 kcal/mol (8953 without restraints) Performing minimization step: 1528. Total energy = 8954 kcal/mol (8947 without restraints) Performing minimization step: 1529. Total energy = 8949 kcal/mol (8942 without restraints) Performing minimization step: 1530. Total energy = 8943 kcal/mol (8937 without restraints) Performing minimization step: 1531. Total energy = 8938 kcal/mol (8931 without restraints) Performing minimization step: 1532. Total energy = 8933 kcal/mol (8926 without restraints) Performing minimization step: 1533. Total energy = 8928 kcal/mol (8921 without restraints) Performing minimization step: 1534. Total energy = 8922 kcal/mol (8915 without restraints) Performing minimization step: 1535. Total energy = 8917 kcal/mol (8910 without restraints) Performing minimization step: 1536. Total energy = 8912 kcal/mol (8905 without restraints) Performing minimization step: 1537. Total energy = 8907 kcal/mol (8900 without restraints) Performing minimization step: 1538. Total energy = 8901 kcal/mol (8894 without restraints) Performing minimization step: 1539. Total energy = 8896 kcal/mol (8889 without restraints) Performing minimization step: 1540. Total energy = 8891 kcal/mol (8884 without restraints) Performing minimization step: 1541. Total energy = 8886 kcal/mol (8879 without restraints) Performing minimization step: 1542. Total energy = 8880 kcal/mol (8874 without restraints) Performing minimization step: 1543. Total energy = 8875 kcal/mol (8868 without restraints) Performing minimization step: 1544. Total energy = 8870 kcal/mol (8863 without restraints) Performing minimization step: 1545. Total energy = 8865 kcal/mol (8858 without restraints) Performing minimization step: 1546. Total energy = 8860 kcal/mol (8853 without restraints) Performing minimization step: 1547. Total energy = 8855 kcal/mol (8848 without restraints) Performing minimization step: 1548. Total energy = 8849 kcal/mol (8843 without restraints) Performing minimization step: 1549. Total energy = 8844 kcal/mol (8837 without restraints) Performing minimization step: 1550. Total energy = 8839 kcal/mol (8832 without restraints) Performing minimization step: 1551. Total energy = 8834 kcal/mol (8827 without restraints) Performing minimization step: 1552. Total energy = 8829 kcal/mol (8822 without restraints) Performing minimization step: 1553. Total energy = 8824 kcal/mol (8817 without restraints) Performing minimization step: 1554. Total energy = 8819 kcal/mol (8812 without restraints) Performing minimization step: 1555. Total energy = 8814 kcal/mol (8807 without restraints) Performing minimization step: 1556. Total energy = 8809 kcal/mol (8802 without restraints) Performing minimization step: 1557. Total energy = 8804 kcal/mol (8797 without restraints) Performing minimization step: 1558. Total energy = 8798 kcal/mol (8792 without restraints) Performing minimization step: 1559. Total energy = 8793 kcal/mol (8787 without restraints) Performing minimization step: 1560. Total energy = 8788 kcal/mol (8782 without restraints) Performing minimization step: 1561. Total energy = 8783 kcal/mol (8777 without restraints) Performing minimization step: 1562. Total energy = 8778 kcal/mol (8771 without restraints) Performing minimization step: 1563. Total energy = 8773 kcal/mol (8766 without restraints) Performing minimization step: 1564. Total energy = 8768 kcal/mol (8761 without restraints) Performing minimization step: 1565. Total energy = 8763 kcal/mol (8756 without restraints) Performing minimization step: 1566. Total energy = 8758 kcal/mol (8751 without restraints) Performing minimization step: 1567. Total energy = 8753 kcal/mol (8746 without restraints) Performing minimization step: 1568. Total energy = 8748 kcal/mol (8742 without restraints) Performing minimization step: 1569. Total energy = 8743 kcal/mol (8737 without restraints) Performing minimization step: 1570. Total energy = 8738 kcal/mol (8732 without restraints) Performing minimization step: 1571. Total energy = 8733 kcal/mol (8727 without restraints) Performing minimization step: 1572. Total energy = 8728 kcal/mol (8722 without restraints) Performing minimization step: 1573. Total energy = 8724 kcal/mol (8717 without restraints) Performing minimization step: 1574. Total energy = 8719 kcal/mol (8712 without restraints) Performing minimization step: 1575. Total energy = 8714 kcal/mol (8707 without restraints) Performing minimization step: 1576. Total energy = 8709 kcal/mol (8702 without restraints) Performing minimization step: 1577. Total energy = 8704 kcal/mol (8697 without restraints) Performing minimization step: 1578. Total energy = 8699 kcal/mol (8692 without restraints) Performing minimization step: 1579. Total energy = 8694 kcal/mol (8687 without restraints) Performing minimization step: 1580. Total energy = 8689 kcal/mol (8682 without restraints) Performing minimization step: 1581. Total energy = 8684 kcal/mol (8678 without restraints) Performing minimization step: 1582. Total energy = 8679 kcal/mol (8673 without restraints) Performing minimization step: 1583. Total energy = 8675 kcal/mol (8668 without restraints) Performing minimization step: 1584. Total energy = 8670 kcal/mol (8663 without restraints) Performing minimization step: 1585. Total energy = 8665 kcal/mol (8658 without restraints) Performing minimization step: 1586. Total energy = 8660 kcal/mol (8653 without restraints) Performing minimization step: 1587. Total energy = 8655 kcal/mol (8648 without restraints) Performing minimization step: 1588. Total energy = 8650 kcal/mol (8644 without restraints) Performing minimization step: 1589. Total energy = 8646 kcal/mol (8639 without restraints) Performing minimization step: 1590. Total energy = 8641 kcal/mol (8634 without restraints) Performing minimization step: 1591. Total energy = 8636 kcal/mol (8629 without restraints) Performing minimization step: 1592. Total energy = 8631 kcal/mol (8624 without restraints) Performing minimization step: 1593. Total energy = 8626 kcal/mol (8620 without restraints) Performing minimization step: 1594. Total energy = 8622 kcal/mol (8615 without restraints) Performing minimization step: 1595. Total energy = 8617 kcal/mol (8610 without restraints) Performing minimization step: 1596. Total energy = 8612 kcal/mol (8605 without restraints) Performing minimization step: 1597. Total energy = 8607 kcal/mol (8601 without restraints) Performing minimization step: 1598. Total energy = 8603 kcal/mol (8596 without restraints) Performing minimization step: 1599. Total energy = 8598 kcal/mol (8591 without restraints) Performing minimization step: 1600. Total energy = 8593 kcal/mol (8586 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 8588 kcal/mol (8582 without restraints) Performing minimization step: 1602. Total energy = 8584 kcal/mol (8577 without restraints) Performing minimization step: 1603. Total energy = 8579 kcal/mol (8572 without restraints) Performing minimization step: 1604. Total energy = 8574 kcal/mol (8568 without restraints) Performing minimization step: 1605. Total energy = 8569 kcal/mol (8563 without restraints) Performing minimization step: 1606. Total energy = 8565 kcal/mol (8558 without restraints) Performing minimization step: 1607. Total energy = 8560 kcal/mol (8553 without restraints) Performing minimization step: 1608. Total energy = 8555 kcal/mol (8549 without restraints) Performing minimization step: 1609. Total energy = 8551 kcal/mol (8544 without restraints) Performing minimization step: 1610. Total energy = 8546 kcal/mol (8539 without restraints) Performing minimization step: 1611. Total energy = 8541 kcal/mol (8535 without restraints) Performing minimization step: 1612. Total energy = 8537 kcal/mol (8530 without restraints) Performing minimization step: 1613. Total energy = 8532 kcal/mol (8525 without restraints) Performing minimization step: 1614. Total energy = 8528 kcal/mol (8521 without restraints) Performing minimization step: 1615. Total energy = 8523 kcal/mol (8516 without restraints) Performing minimization step: 1616. Total energy = 8518 kcal/mol (8512 without restraints) Performing minimization step: 1617. Total energy = 8514 kcal/mol (8507 without restraints) Performing minimization step: 1618. Total energy = 8509 kcal/mol (8502 without restraints) Performing minimization step: 1619. Total energy = 8504 kcal/mol (8498 without restraints) Performing minimization step: 1620. Total energy = 8500 kcal/mol (8493 without restraints) Performing minimization step: 1621. Total energy = 8495 kcal/mol (8489 without restraints) Performing minimization step: 1622. Total energy = 8491 kcal/mol (8484 without restraints) Performing minimization step: 1623. Total energy = 8486 kcal/mol (8479 without restraints) Performing minimization step: 1624. Total energy = 8482 kcal/mol (8475 without restraints) Performing minimization step: 1625. Total energy = 8477 kcal/mol (8470 without restraints) Performing minimization step: 1626. Total energy = 8472 kcal/mol (8466 without restraints) Performing minimization step: 1627. Total energy = 8468 kcal/mol (8461 without restraints) Performing minimization step: 1628. Total energy = 8463 kcal/mol (8457 without restraints) Performing minimization step: 1629. Total energy = 8459 kcal/mol (8452 without restraints) Performing minimization step: 1630. Total energy = 8454 kcal/mol (8448 without restraints) Performing minimization step: 1631. Total energy = 8450 kcal/mol (8443 without restraints) Performing minimization step: 1632. Total energy = 8445 kcal/mol (8439 without restraints) Performing minimization step: 1633. Total energy = 8441 kcal/mol (8434 without restraints) Performing minimization step: 1634. Total energy = 8436 kcal/mol (8430 without restraints) Performing minimization step: 1635. Total energy = 8432 kcal/mol (8425 without restraints) Performing minimization step: 1636. Total energy = 8427 kcal/mol (8421 without restraints) Performing minimization step: 1637. Total energy = 8423 kcal/mol (8416 without restraints) Performing minimization step: 1638. Total energy = 8418 kcal/mol (8412 without restraints) Performing minimization step: 1639. Total energy = 8414 kcal/mol (8407 without restraints) Performing minimization step: 1640. Total energy = 8409 kcal/mol (8403 without restraints) Performing minimization step: 1641. Total energy = 8405 kcal/mol (8398 without restraints) Performing minimization step: 1642. Total energy = 8400 kcal/mol (8394 without restraints) Performing minimization step: 1643. Total energy = 8396 kcal/mol (8389 without restraints) Performing minimization step: 1644. Total energy = 8392 kcal/mol (8385 without restraints) Performing minimization step: 1645. Total energy = 8387 kcal/mol (8381 without restraints) Performing minimization step: 1646. Total energy = 8383 kcal/mol (8376 without restraints) Performing minimization step: 1647. Total energy = 8378 kcal/mol (8372 without restraints) Performing minimization step: 1648. Total energy = 8374 kcal/mol (8367 without restraints) Performing minimization step: 1649. Total energy = 8369 kcal/mol (8363 without restraints) Performing minimization step: 1650. Total energy = 8365 kcal/mol (8358 without restraints) Performing minimization step: 1651. Total energy = 8361 kcal/mol (8354 without restraints) Performing minimization step: 1652. Total energy = 8356 kcal/mol (8350 without restraints) Performing minimization step: 1653. Total energy = 8352 kcal/mol (8345 without restraints) Performing minimization step: 1654. Total energy = 8348 kcal/mol (8341 without restraints) Performing minimization step: 1655. Total energy = 8343 kcal/mol (8337 without restraints) Performing minimization step: 1656. Total energy = 8339 kcal/mol (8332 without restraints) Performing minimization step: 1657. Total energy = 8334 kcal/mol (8328 without restraints) Performing minimization step: 1658. Total energy = 8330 kcal/mol (8323 without restraints) Performing minimization step: 1659. Total energy = 8326 kcal/mol (8319 without restraints) Performing minimization step: 1660. Total energy = 8321 kcal/mol (8315 without restraints) Performing minimization step: 1661. Total energy = 8317 kcal/mol (8310 without restraints) Performing minimization step: 1662. Total energy = 8313 kcal/mol (8306 without restraints) Performing minimization step: 1663. Total energy = 8308 kcal/mol (8302 without restraints) Performing minimization step: 1664. Total energy = 8304 kcal/mol (8297 without restraints) Performing minimization step: 1665. Total energy = 8300 kcal/mol (8293 without restraints) Performing minimization step: 1666. Total energy = 8295 kcal/mol (8289 without restraints) Performing minimization step: 1667. Total energy = 8291 kcal/mol (8285 without restraints) Performing minimization step: 1668. Total energy = 8287 kcal/mol (8280 without restraints) Performing minimization step: 1669. Total energy = 8283 kcal/mol (8276 without restraints) Performing minimization step: 1670. Total energy = 8278 kcal/mol (8272 without restraints) Performing minimization step: 1671. Total energy = 8274 kcal/mol (8267 without restraints) Performing minimization step: 1672. Total energy = 8270 kcal/mol (8263 without restraints) Performing minimization step: 1673. Total energy = 8265 kcal/mol (8259 without restraints) Performing minimization step: 1674. Total energy = 8261 kcal/mol (8255 without restraints) Performing minimization step: 1675. Total energy = 8257 kcal/mol (8250 without restraints) Performing minimization step: 1676. Total energy = 8253 kcal/mol (8246 without restraints) Performing minimization step: 1677. Total energy = 8248 kcal/mol (8242 without restraints) Performing minimization step: 1678. Total energy = 8244 kcal/mol (8238 without restraints) Performing minimization step: 1679. Total energy = 8240 kcal/mol (8233 without restraints) Performing minimization step: 1680. Total energy = 8236 kcal/mol (8229 without restraints) Performing minimization step: 1681. Total energy = 8231 kcal/mol (8225 without restraints) Performing minimization step: 1682. Total energy = 8227 kcal/mol (8221 without restraints) Performing minimization step: 1683. Total energy = 8223 kcal/mol (8216 without restraints) Performing minimization step: 1684. Total energy = 8219 kcal/mol (8212 without restraints) Performing minimization step: 1685. Total energy = 8215 kcal/mol (8208 without restraints) Performing minimization step: 1686. Total energy = 8210 kcal/mol (8204 without restraints) Performing minimization step: 1687. Total energy = 8206 kcal/mol (8200 without restraints) Performing minimization step: 1688. Total energy = 8202 kcal/mol (8196 without restraints) Performing minimization step: 1689. Total energy = 8198 kcal/mol (8191 without restraints) Performing minimization step: 1690. Total energy = 8194 kcal/mol (8187 without restraints) Performing minimization step: 1691. Total energy = 8189 kcal/mol (8183 without restraints) Performing minimization step: 1692. Total energy = 8185 kcal/mol (8179 without restraints) Performing minimization step: 1693. Total energy = 8181 kcal/mol (8175 without restraints) Performing minimization step: 1694. Total energy = 8177 kcal/mol (8170 without restraints) Performing minimization step: 1695. Total energy = 8173 kcal/mol (8166 without restraints) Performing minimization step: 1696. Total energy = 8169 kcal/mol (8162 without restraints) Performing minimization step: 1697. Total energy = 8165 kcal/mol (8158 without restraints) Performing minimization step: 1698. Total energy = 8160 kcal/mol (8154 without restraints) Performing minimization step: 1699. Total energy = 8156 kcal/mol (8150 without restraints) Performing minimization step: 1700. Total energy = 8152 kcal/mol (8146 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 8148 kcal/mol (8142 without restraints) Performing minimization step: 1702. Total energy = 8144 kcal/mol (8137 without restraints) Performing minimization step: 1703. Total energy = 8140 kcal/mol (8133 without restraints) Performing minimization step: 1704. Total energy = 8136 kcal/mol (8129 without restraints) Performing minimization step: 1705. Total energy = 8132 kcal/mol (8125 without restraints) Performing minimization step: 1706. Total energy = 8128 kcal/mol (8121 without restraints) Performing minimization step: 1707. Total energy = 8123 kcal/mol (8117 without restraints) Performing minimization step: 1708. Total energy = 8119 kcal/mol (8113 without restraints) Performing minimization step: 1709. Total energy = 8115 kcal/mol (8109 without restraints) Performing minimization step: 1710. Total energy = 8111 kcal/mol (8105 without restraints) Performing minimization step: 1711. Total energy = 8107 kcal/mol (8101 without restraints) Performing minimization step: 1712. Total energy = 8103 kcal/mol (8097 without restraints) Performing minimization step: 1713. Total energy = 8099 kcal/mol (8092 without restraints) Performing minimization step: 1714. Total energy = 8095 kcal/mol (8088 without restraints) Performing minimization step: 1715. Total energy = 8091 kcal/mol (8084 without restraints) Performing minimization step: 1716. Total energy = 8087 kcal/mol (8080 without restraints) Performing minimization step: 1717. Total energy = 8083 kcal/mol (8076 without restraints) Performing minimization step: 1718. Total energy = 8079 kcal/mol (8072 without restraints) Performing minimization step: 1719. Total energy = 8075 kcal/mol (8068 without restraints) Performing minimization step: 1720. Total energy = 8071 kcal/mol (8064 without restraints) Performing minimization step: 1721. Total energy = 8067 kcal/mol (8060 without restraints) Performing minimization step: 1722. Total energy = 8063 kcal/mol (8056 without restraints) Performing minimization step: 1723. Total energy = 8059 kcal/mol (8052 without restraints) Performing minimization step: 1724. Total energy = 8055 kcal/mol (8048 without restraints) Performing minimization step: 1725. Total energy = 8051 kcal/mol (8044 without restraints) Performing minimization step: 1726. Total energy = 8047 kcal/mol (8040 without restraints) Performing minimization step: 1727. Total energy = 8043 kcal/mol (8036 without restraints) Performing minimization step: 1728. Total energy = 8039 kcal/mol (8032 without restraints) Performing minimization step: 1729. Total energy = 8035 kcal/mol (8028 without restraints) Performing minimization step: 1730. Total energy = 8031 kcal/mol (8024 without restraints) Performing minimization step: 1731. Total energy = 8027 kcal/mol (8020 without restraints) Performing minimization step: 1732. Total energy = 8023 kcal/mol (8016 without restraints) Performing minimization step: 1733. Total energy = 8019 kcal/mol (8012 without restraints) Performing minimization step: 1734. Total energy = 8015 kcal/mol (8008 without restraints) Performing minimization step: 1735. Total energy = 8011 kcal/mol (8004 without restraints) Performing minimization step: 1736. Total energy = 8007 kcal/mol (8000 without restraints) Performing minimization step: 1737. Total energy = 8003 kcal/mol (7996 without restraints) Performing minimization step: 1738. Total energy = 7999 kcal/mol (7992 without restraints) Performing minimization step: 1739. Total energy = 7995 kcal/mol (7989 without restraints) Performing minimization step: 1740. Total energy = 7991 kcal/mol (7985 without restraints) Performing minimization step: 1741. Total energy = 7987 kcal/mol (7981 without restraints) Performing minimization step: 1742. Total energy = 7983 kcal/mol (7977 without restraints) Performing minimization step: 1743. Total energy = 7979 kcal/mol (7973 without restraints) Performing minimization step: 1744. Total energy = 7975 kcal/mol (7969 without restraints) Performing minimization step: 1745. Total energy = 7971 kcal/mol (7965 without restraints) Performing minimization step: 1746. Total energy = 7967 kcal/mol (7961 without restraints) Performing minimization step: 1747. Total energy = 7964 kcal/mol (7957 without restraints) Performing minimization step: 1748. Total energy = 7960 kcal/mol (7953 without restraints) Performing minimization step: 1749. Total energy = 7956 kcal/mol (7949 without restraints) Performing minimization step: 1750. Total energy = 7952 kcal/mol (7945 without restraints) Performing minimization step: 1751. Total energy = 7948 kcal/mol (7942 without restraints) Performing minimization step: 1752. Total energy = 7944 kcal/mol (7938 without restraints) Performing minimization step: 1753. Total energy = 7940 kcal/mol (7934 without restraints) Performing minimization step: 1754. Total energy = 7936 kcal/mol (7930 without restraints) Performing minimization step: 1755. Total energy = 7932 kcal/mol (7926 without restraints) Performing minimization step: 1756. Total energy = 7929 kcal/mol (7922 without restraints) Performing minimization step: 1757. Total energy = 7925 kcal/mol (7918 without restraints) Performing minimization step: 1758. Total energy = 7921 kcal/mol (7914 without restraints) Performing minimization step: 1759. Total energy = 7917 kcal/mol (7911 without restraints) Performing minimization step: 1760. Total energy = 7913 kcal/mol (7907 without restraints) Performing minimization step: 1761. Total energy = 7909 kcal/mol (7903 without restraints) Performing minimization step: 1762. Total energy = 7905 kcal/mol (7899 without restraints) Performing minimization step: 1763. Total energy = 7902 kcal/mol (7895 without restraints) Performing minimization step: 1764. Total energy = 7898 kcal/mol (7891 without restraints) Performing minimization step: 1765. Total energy = 7894 kcal/mol (7888 without restraints) Performing minimization step: 1766. Total energy = 7890 kcal/mol (7884 without restraints) Performing minimization step: 1767. Total energy = 7886 kcal/mol (7880 without restraints) Performing minimization step: 1768. Total energy = 7882 kcal/mol (7876 without restraints) Performing minimization step: 1769. Total energy = 7879 kcal/mol (7872 without restraints) Performing minimization step: 1770. Total energy = 7875 kcal/mol (7868 without restraints) Performing minimization step: 1771. Total energy = 7871 kcal/mol (7865 without restraints) Performing minimization step: 1772. Total energy = 7867 kcal/mol (7861 without restraints) Performing minimization step: 1773. Total energy = 7863 kcal/mol (7857 without restraints) Performing minimization step: 1774. Total energy = 7860 kcal/mol (7853 without restraints) Performing minimization step: 1775. Total energy = 7856 kcal/mol (7849 without restraints) Performing minimization step: 1776. Total energy = 7852 kcal/mol (7846 without restraints) Performing minimization step: 1777. Total energy = 7848 kcal/mol (7842 without restraints) Performing minimization step: 1778. Total energy = 7844 kcal/mol (7838 without restraints) Performing minimization step: 1779. Total energy = 7841 kcal/mol (7834 without restraints) Performing minimization step: 1780. Total energy = 7837 kcal/mol (7831 without restraints) Performing minimization step: 1781. Total energy = 7833 kcal/mol (7827 without restraints) Performing minimization step: 1782. Total energy = 7829 kcal/mol (7823 without restraints) Performing minimization step: 1783. Total energy = 7826 kcal/mol (7819 without restraints) Performing minimization step: 1784. Total energy = 7822 kcal/mol (7816 without restraints) Performing minimization step: 1785. Total energy = 7818 kcal/mol (7812 without restraints) Performing minimization step: 1786. Total energy = 7814 kcal/mol (7808 without restraints) Performing minimization step: 1787. Total energy = 7811 kcal/mol (7804 without restraints) Performing minimization step: 1788. Total energy = 7807 kcal/mol (7801 without restraints) Performing minimization step: 1789. Total energy = 7803 kcal/mol (7797 without restraints) Performing minimization step: 1790. Total energy = 7799 kcal/mol (7793 without restraints) Performing minimization step: 1791. Total energy = 7796 kcal/mol (7789 without restraints) Performing minimization step: 1792. Total energy = 7792 kcal/mol (7786 without restraints) Performing minimization step: 1793. Total energy = 7788 kcal/mol (7782 without restraints) Performing minimization step: 1794. Total energy = 7784 kcal/mol (7778 without restraints) Performing minimization step: 1795. Total energy = 7781 kcal/mol (7774 without restraints) Performing minimization step: 1796. Total energy = 7777 kcal/mol (7771 without restraints) Performing minimization step: 1797. Total energy = 7773 kcal/mol (7767 without restraints) Performing minimization step: 1798. Total energy = 7770 kcal/mol (7763 without restraints) Performing minimization step: 1799. Total energy = 7766 kcal/mol (7760 without restraints) Performing minimization step: 1800. Total energy = 7762 kcal/mol (7756 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 7759 kcal/mol (7752 without restraints) Performing minimization step: 1802. Total energy = 7755 kcal/mol (7749 without restraints) Performing minimization step: 1803. Total energy = 7751 kcal/mol (7745 without restraints) Performing minimization step: 1804. Total energy = 7748 kcal/mol (7741 without restraints) Performing minimization step: 1805. Total energy = 7744 kcal/mol (7738 without restraints) Performing minimization step: 1806. Total energy = 7740 kcal/mol (7734 without restraints) Performing minimization step: 1807. Total energy = 7736 kcal/mol (7730 without restraints) Performing minimization step: 1808. Total energy = 7733 kcal/mol (7727 without restraints) Performing minimization step: 1809. Total energy = 7729 kcal/mol (7723 without restraints) Performing minimization step: 1810. Total energy = 7725 kcal/mol (7719 without restraints) Performing minimization step: 1811. Total energy = 7722 kcal/mol (7716 without restraints) Performing minimization step: 1812. Total energy = 7718 kcal/mol (7712 without restraints) Performing minimization step: 1813. Total energy = 7715 kcal/mol (7708 without restraints) Performing minimization step: 1814. Total energy = 7711 kcal/mol (7705 without restraints) Performing minimization step: 1815. Total energy = 7707 kcal/mol (7701 without restraints) Performing minimization step: 1816. Total energy = 7704 kcal/mol (7697 without restraints) Performing minimization step: 1817. Total energy = 7700 kcal/mol (7694 without restraints) Performing minimization step: 1818. Total energy = 7696 kcal/mol (7690 without restraints) Performing minimization step: 1819. Total energy = 7693 kcal/mol (7686 without restraints) Performing minimization step: 1820. Total energy = 7689 kcal/mol (7683 without restraints) Performing minimization step: 1821. Total energy = 7685 kcal/mol (7679 without restraints) Performing minimization step: 1822. Total energy = 7682 kcal/mol (7676 without restraints) Performing minimization step: 1823. Total energy = 7678 kcal/mol (7672 without restraints) Performing minimization step: 1824. Total energy = 7675 kcal/mol (7668 without restraints) Performing minimization step: 1825. Total energy = 7671 kcal/mol (7665 without restraints) Performing minimization step: 1826. Total energy = 7667 kcal/mol (7661 without restraints) Performing minimization step: 1827. Total energy = 7664 kcal/mol (7658 without restraints) Performing minimization step: 1828. Total energy = 7660 kcal/mol (7654 without restraints) Performing minimization step: 1829. Total energy = 7657 kcal/mol (7650 without restraints) Performing minimization step: 1830. Total energy = 7653 kcal/mol (7647 without restraints) Performing minimization step: 1831. Total energy = 7649 kcal/mol (7643 without restraints) Performing minimization step: 1832. Total energy = 7646 kcal/mol (7640 without restraints) Performing minimization step: 1833. Total energy = 7642 kcal/mol (7636 without restraints) Performing minimization step: 1834. Total energy = 7639 kcal/mol (7632 without restraints) Performing minimization step: 1835. Total energy = 7635 kcal/mol (7629 without restraints) Performing minimization step: 1836. Total energy = 7632 kcal/mol (7625 without restraints) Performing minimization step: 1837. Total energy = 7628 kcal/mol (7622 without restraints) Performing minimization step: 1838. Total energy = 7624 kcal/mol (7618 without restraints) Performing minimization step: 1839. Total energy = 7621 kcal/mol (7615 without restraints) Performing minimization step: 1840. Total energy = 7617 kcal/mol (7611 without restraints) Performing minimization step: 1841. Total energy = 7614 kcal/mol (7607 without restraints) Performing minimization step: 1842. Total energy = 7610 kcal/mol (7604 without restraints) Performing minimization step: 1843. Total energy = 7607 kcal/mol (7600 without restraints) Performing minimization step: 1844. Total energy = 7603 kcal/mol (7597 without restraints) Performing minimization step: 1845. Total energy = 7600 kcal/mol (7593 without restraints) Performing minimization step: 1846. Total energy = 7596 kcal/mol (7590 without restraints) Performing minimization step: 1847. Total energy = 7592 kcal/mol (7586 without restraints) Performing minimization step: 1848. Total energy = 7589 kcal/mol (7583 without restraints) Performing minimization step: 1849. Total energy = 7585 kcal/mol (7579 without restraints) Performing minimization step: 1850. Total energy = 7582 kcal/mol (7576 without restraints) Performing minimization step: 1851. Total energy = 7578 kcal/mol (7572 without restraints) Performing minimization step: 1852. Total energy = 7575 kcal/mol (7569 without restraints) Performing minimization step: 1853. Total energy = 7571 kcal/mol (7565 without restraints) Performing minimization step: 1854. Total energy = 7568 kcal/mol (7562 without restraints) Performing minimization step: 1855. Total energy = 7564 kcal/mol (7558 without restraints) Performing minimization step: 1856. Total energy = 7561 kcal/mol (7555 without restraints) Performing minimization step: 1857. Total energy = 7557 kcal/mol (7551 without restraints) Performing minimization step: 1858. Total energy = 7554 kcal/mol (7548 without restraints) Performing minimization step: 1859. Total energy = 7550 kcal/mol (7544 without restraints) Performing minimization step: 1860. Total energy = 7547 kcal/mol (7541 without restraints) Performing minimization step: 1861. Total energy = 7543 kcal/mol (7537 without restraints) Performing minimization step: 1862. Total energy = 7540 kcal/mol (7534 without restraints) Performing minimization step: 1863. Total energy = 7536 kcal/mol (7530 without restraints) Performing minimization step: 1864. Total energy = 7533 kcal/mol (7527 without restraints) Performing minimization step: 1865. Total energy = 7529 kcal/mol (7523 without restraints) Performing minimization step: 1866. Total energy = 7526 kcal/mol (7520 without restraints) Performing minimization step: 1867. Total energy = 7522 kcal/mol (7516 without restraints) Performing minimization step: 1868. Total energy = 7519 kcal/mol (7513 without restraints) Performing minimization step: 1869. Total energy = 7516 kcal/mol (7509 without restraints) Performing minimization step: 1870. Total energy = 7512 kcal/mol (7506 without restraints) Performing minimization step: 1871. Total energy = 7509 kcal/mol (7502 without restraints) Performing minimization step: 1872. Total energy = 7505 kcal/mol (7499 without restraints) Performing minimization step: 1873. Total energy = 7502 kcal/mol (7496 without restraints) Performing minimization step: 1874. Total energy = 7498 kcal/mol (7492 without restraints) Performing minimization step: 1875. Total energy = 7495 kcal/mol (7489 without restraints) Performing minimization step: 1876. Total energy = 7491 kcal/mol (7485 without restraints) Performing minimization step: 1877. Total energy = 7488 kcal/mol (7482 without restraints) Performing minimization step: 1878. Total energy = 7484 kcal/mol (7478 without restraints) Performing minimization step: 1879. Total energy = 7481 kcal/mol (7475 without restraints) Performing minimization step: 1880. Total energy = 7478 kcal/mol (7471 without restraints) Performing minimization step: 1881. Total energy = 7474 kcal/mol (7468 without restraints) Performing minimization step: 1882. Total energy = 7471 kcal/mol (7465 without restraints) Performing minimization step: 1883. Total energy = 7467 kcal/mol (7461 without restraints) Performing minimization step: 1884. Total energy = 7464 kcal/mol (7458 without restraints) Performing minimization step: 1885. Total energy = 7461 kcal/mol (7454 without restraints) Performing minimization step: 1886. Total energy = 7457 kcal/mol (7451 without restraints) Performing minimization step: 1887. Total energy = 7454 kcal/mol (7448 without restraints) Performing minimization step: 1888. Total energy = 7450 kcal/mol (7444 without restraints) Performing minimization step: 1889. Total energy = 7447 kcal/mol (7441 without restraints) Performing minimization step: 1890. Total energy = 7443 kcal/mol (7437 without restraints) Performing minimization step: 1891. Total energy = 7440 kcal/mol (7434 without restraints) Performing minimization step: 1892. Total energy = 7437 kcal/mol (7431 without restraints) Performing minimization step: 1893. Total energy = 7433 kcal/mol (7427 without restraints) Performing minimization step: 1894. Total energy = 7430 kcal/mol (7424 without restraints) Performing minimization step: 1895. Total energy = 7427 kcal/mol (7420 without restraints) Performing minimization step: 1896. Total energy = 7423 kcal/mol (7417 without restraints) Performing minimization step: 1897. Total energy = 7420 kcal/mol (7414 without restraints) Performing minimization step: 1898. Total energy = 7416 kcal/mol (7410 without restraints) Performing minimization step: 1899. Total energy = 7413 kcal/mol (7407 without restraints) Performing minimization step: 1900. Total energy = 7410 kcal/mol (7404 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 7406 kcal/mol (7400 without restraints) Performing minimization step: 1902. Total energy = 7403 kcal/mol (7397 without restraints) Performing minimization step: 1903. Total energy = 7400 kcal/mol (7393 without restraints) Performing minimization step: 1904. Total energy = 7396 kcal/mol (7390 without restraints) Performing minimization step: 1905. Total energy = 7393 kcal/mol (7387 without restraints) Performing minimization step: 1906. Total energy = 7389 kcal/mol (7383 without restraints) Performing minimization step: 1907. Total energy = 7386 kcal/mol (7380 without restraints) Performing minimization step: 1908. Total energy = 7383 kcal/mol (7377 without restraints) Performing minimization step: 1909. Total energy = 7379 kcal/mol (7373 without restraints) Performing minimization step: 1910. Total energy = 7376 kcal/mol (7370 without restraints) Performing minimization step: 1911. Total energy = 7373 kcal/mol (7367 without restraints) Performing minimization step: 1912. Total energy = 7369 kcal/mol (7363 without restraints) Performing minimization step: 1913. Total energy = 7366 kcal/mol (7360 without restraints) Performing minimization step: 1914. Total energy = 7363 kcal/mol (7357 without restraints) Performing minimization step: 1915. Total energy = 7359 kcal/mol (7353 without restraints) Performing minimization step: 1916. Total energy = 7356 kcal/mol (7350 without restraints) Performing minimization step: 1917. Total energy = 7353 kcal/mol (7347 without restraints) Performing minimization step: 1918. Total energy = 7349 kcal/mol (7343 without restraints) Performing minimization step: 1919. Total energy = 7346 kcal/mol (7340 without restraints) Performing minimization step: 1920. Total energy = 7343 kcal/mol (7337 without restraints) Performing minimization step: 1921. Total energy = 7340 kcal/mol (7333 without restraints) Performing minimization step: 1922. Total energy = 7336 kcal/mol (7330 without restraints) Performing minimization step: 1923. Total energy = 7333 kcal/mol (7327 without restraints) Performing minimization step: 1924. Total energy = 7330 kcal/mol (7324 without restraints) Performing minimization step: 1925. Total energy = 7326 kcal/mol (7320 without restraints) Performing minimization step: 1926. Total energy = 7323 kcal/mol (7317 without restraints) Performing minimization step: 1927. Total energy = 7320 kcal/mol (7314 without restraints) Performing minimization step: 1928. Total energy = 7316 kcal/mol (7310 without restraints) Performing minimization step: 1929. Total energy = 7313 kcal/mol (7307 without restraints) Performing minimization step: 1930. Total energy = 7310 kcal/mol (7304 without restraints) Performing minimization step: 1931. Total energy = 7307 kcal/mol (7301 without restraints) Performing minimization step: 1932. Total energy = 7303 kcal/mol (7297 without restraints) Performing minimization step: 1933. Total energy = 7300 kcal/mol (7294 without restraints) Performing minimization step: 1934. Total energy = 7297 kcal/mol (7291 without restraints) Performing minimization step: 1935. Total energy = 7294 kcal/mol (7287 without restraints) Performing minimization step: 1936. Total energy = 7290 kcal/mol (7284 without restraints) Performing minimization step: 1937. Total energy = 7287 kcal/mol (7281 without restraints) Performing minimization step: 1938. Total energy = 7284 kcal/mol (7278 without restraints) Performing minimization step: 1939. Total energy = 7280 kcal/mol (7274 without restraints) Performing minimization step: 1940. Total energy = 7277 kcal/mol (7271 without restraints) Performing minimization step: 1941. Total energy = 7274 kcal/mol (7268 without restraints) Performing minimization step: 1942. Total energy = 7271 kcal/mol (7265 without restraints) Performing minimization step: 1943. Total energy = 7267 kcal/mol (7261 without restraints) Performing minimization step: 1944. Total energy = 7264 kcal/mol (7258 without restraints) Performing minimization step: 1945. Total energy = 7261 kcal/mol (7255 without restraints) Performing minimization step: 1946. Total energy = 7258 kcal/mol (7252 without restraints) Performing minimization step: 1947. Total energy = 7254 kcal/mol (7248 without restraints) Performing minimization step: 1948. Total energy = 7251 kcal/mol (7245 without restraints) Performing minimization step: 1949. Total energy = 7248 kcal/mol (7242 without restraints) Performing minimization step: 1950. Total energy = 7245 kcal/mol (7239 without restraints) Performing minimization step: 1951. Total energy = 7242 kcal/mol (7236 without restraints) Performing minimization step: 1952. Total energy = 7238 kcal/mol (7232 without restraints) Performing minimization step: 1953. Total energy = 7235 kcal/mol (7229 without restraints) Performing minimization step: 1954. Total energy = 7232 kcal/mol (7226 without restraints) Performing minimization step: 1955. Total energy = 7229 kcal/mol (7223 without restraints) Performing minimization step: 1956. Total energy = 7225 kcal/mol (7219 without restraints) Performing minimization step: 1957. Total energy = 7222 kcal/mol (7216 without restraints) Performing minimization step: 1958. Total energy = 7219 kcal/mol (7213 without restraints) Performing minimization step: 1959. Total energy = 7216 kcal/mol (7210 without restraints) Performing minimization step: 1960. Total energy = 7213 kcal/mol (7207 without restraints) Performing minimization step: 1961. Total energy = 7209 kcal/mol (7203 without restraints) Performing minimization step: 1962. Total energy = 7206 kcal/mol (7200 without restraints) Performing minimization step: 1963. Total energy = 7203 kcal/mol (7197 without restraints) Performing minimization step: 1964. Total energy = 7200 kcal/mol (7194 without restraints) Performing minimization step: 1965. Total energy = 7197 kcal/mol (7191 without restraints) Performing minimization step: 1966. Total energy = 7193 kcal/mol (7187 without restraints) Performing minimization step: 1967. Total energy = 7190 kcal/mol (7184 without restraints) Performing minimization step: 1968. Total energy = 7187 kcal/mol (7181 without restraints) Performing minimization step: 1969. Total energy = 7184 kcal/mol (7178 without restraints) Performing minimization step: 1970. Total energy = 7181 kcal/mol (7175 without restraints) Performing minimization step: 1971. Total energy = 7178 kcal/mol (7172 without restraints) Performing minimization step: 1972. Total energy = 7174 kcal/mol (7168 without restraints) Performing minimization step: 1973. Total energy = 7171 kcal/mol (7165 without restraints) Performing minimization step: 1974. Total energy = 7168 kcal/mol (7162 without restraints) Performing minimization step: 1975. Total energy = 7165 kcal/mol (7159 without restraints) Performing minimization step: 1976. Total energy = 7162 kcal/mol (7156 without restraints) Performing minimization step: 1977. Total energy = 7159 kcal/mol (7153 without restraints) Performing minimization step: 1978. Total energy = 7155 kcal/mol (7149 without restraints) Performing minimization step: 1979. Total energy = 7152 kcal/mol (7146 without restraints) Performing minimization step: 1980. Total energy = 7149 kcal/mol (7143 without restraints) Performing minimization step: 1981. Total energy = 7146 kcal/mol (7140 without restraints) Performing minimization step: 1982. Total energy = 7143 kcal/mol (7137 without restraints) Performing minimization step: 1983. Total energy = 7140 kcal/mol (7134 without restraints) Performing minimization step: 1984. Total energy = 7137 kcal/mol (7131 without restraints) Performing minimization step: 1985. Total energy = 7133 kcal/mol (7127 without restraints) Performing minimization step: 1986. Total energy = 7130 kcal/mol (7124 without restraints) Performing minimization step: 1987. Total energy = 7127 kcal/mol (7121 without restraints) Performing minimization step: 1988. Total energy = 7124 kcal/mol (7118 without restraints) Performing minimization step: 1989. Total energy = 7121 kcal/mol (7115 without restraints) Performing minimization step: 1990. Total energy = 7118 kcal/mol (7112 without restraints) Performing minimization step: 1991. Total energy = 7115 kcal/mol (7109 without restraints) Performing minimization step: 1992. Total energy = 7112 kcal/mol (7106 without restraints) Performing minimization step: 1993. Total energy = 7108 kcal/mol (7102 without restraints) Performing minimization step: 1994. Total energy = 7105 kcal/mol (7099 without restraints) Performing minimization step: 1995. Total energy = 7102 kcal/mol (7096 without restraints) Performing minimization step: 1996. Total energy = 7099 kcal/mol (7093 without restraints) Performing minimization step: 1997. Total energy = 7096 kcal/mol (7090 without restraints) Performing minimization step: 1998. Total energy = 7093 kcal/mol (7087 without restraints) Performing minimization step: 1999. Total energy = 7090 kcal/mol (7084 without restraints) Performing minimization step: 2000. Total energy = 7087 kcal/mol (7081 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 7084 kcal/mol (7078 without restraints) Performing minimization step: 2002. Total energy = 7080 kcal/mol (7075 without restraints) Performing minimization step: 2003. Total energy = 7077 kcal/mol (7071 without restraints) Performing minimization step: 2004. Total energy = 7074 kcal/mol (7068 without restraints) Performing minimization step: 2005. Total energy = 7071 kcal/mol (7065 without restraints) Performing minimization step: 2006. Total energy = 7068 kcal/mol (7062 without restraints) Performing minimization step: 2007. Total energy = 7065 kcal/mol (7059 without restraints) Performing minimization step: 2008. Total energy = 7062 kcal/mol (7056 without restraints) Performing minimization step: 2009. Total energy = 7059 kcal/mol (7053 without restraints) Performing minimization step: 2010. Total energy = 7056 kcal/mol (7050 without restraints) Performing minimization step: 2011. Total energy = 7053 kcal/mol (7047 without restraints) Performing minimization step: 2012. Total energy = 7050 kcal/mol (7044 without restraints) Performing minimization step: 2013. Total energy = 7047 kcal/mol (7041 without restraints) Performing minimization step: 2014. Total energy = 7044 kcal/mol (7038 without restraints) Performing minimization step: 2015. Total energy = 7040 kcal/mol (7035 without restraints) Performing minimization step: 2016. Total energy = 7037 kcal/mol (7031 without restraints) Performing minimization step: 2017. Total energy = 7034 kcal/mol (7028 without restraints) Performing minimization step: 2018. Total energy = 7031 kcal/mol (7025 without restraints) Performing minimization step: 2019. Total energy = 7028 kcal/mol (7022 without restraints) Performing minimization step: 2020. Total energy = 7025 kcal/mol (7019 without restraints) Performing minimization step: 2021. Total energy = 7022 kcal/mol (7016 without restraints) Performing minimization step: 2022. Total energy = 7019 kcal/mol (7013 without restraints) Performing minimization step: 2023. Total energy = 7016 kcal/mol (7010 without restraints) Performing minimization step: 2024. Total energy = 7013 kcal/mol (7007 without restraints) Performing minimization step: 2025. Total energy = 7010 kcal/mol (7004 without restraints) Performing minimization step: 2026. Total energy = 7007 kcal/mol (7001 without restraints) Performing minimization step: 2027. Total energy = 7004 kcal/mol (6998 without restraints) Performing minimization step: 2028. Total energy = 7001 kcal/mol (6995 without restraints) Performing minimization step: 2029. Total energy = 6998 kcal/mol (6992 without restraints) Performing minimization step: 2030. Total energy = 6995 kcal/mol (6989 without restraints) Performing minimization step: 2031. Total energy = 6992 kcal/mol (6986 without restraints) Performing minimization step: 2032. Total energy = 6989 kcal/mol (6983 without restraints) Performing minimization step: 2033. Total energy = 6986 kcal/mol (6980 without restraints) Performing minimization step: 2034. Total energy = 6983 kcal/mol (6977 without restraints) Performing minimization step: 2035. Total energy = 6980 kcal/mol (6974 without restraints) Performing minimization step: 2036. Total energy = 6977 kcal/mol (6971 without restraints) Performing minimization step: 2037. Total energy = 6974 kcal/mol (6968 without restraints) Performing minimization step: 2038. Total energy = 6971 kcal/mol (6965 without restraints) Performing minimization step: 2039. Total energy = 6968 kcal/mol (6962 without restraints) Performing minimization step: 2040. Total energy = 6965 kcal/mol (6959 without restraints) Performing minimization step: 2041. Total energy = 6962 kcal/mol (6956 without restraints) Performing minimization step: 2042. Total energy = 6959 kcal/mol (6953 without restraints) Performing minimization step: 2043. Total energy = 6956 kcal/mol (6950 without restraints) Performing minimization step: 2044. Total energy = 6953 kcal/mol (6947 without restraints) Performing minimization step: 2045. Total energy = 6950 kcal/mol (6944 without restraints) Performing minimization step: 2046. Total energy = 6947 kcal/mol (6941 without restraints) Performing minimization step: 2047. Total energy = 6944 kcal/mol (6938 without restraints) Performing minimization step: 2048. Total energy = 6941 kcal/mol (6935 without restraints) Performing minimization step: 2049. Total energy = 6938 kcal/mol (6932 without restraints) Performing minimization step: 2050. Total energy = 6935 kcal/mol (6929 without restraints) Performing minimization step: 2051. Total energy = 6932 kcal/mol (6926 without restraints) Performing minimization step: 2052. Total energy = 6929 kcal/mol (6923 without restraints) Performing minimization step: 2053. Total energy = 6926 kcal/mol (6920 without restraints) Performing minimization step: 2054. Total energy = 6923 kcal/mol (6917 without restraints) Performing minimization step: 2055. Total energy = 6920 kcal/mol (6914 without restraints) Performing minimization step: 2056. Total energy = 6917 kcal/mol (6911 without restraints) Performing minimization step: 2057. Total energy = 6914 kcal/mol (6908 without restraints) Performing minimization step: 2058. Total energy = 6911 kcal/mol (6905 without restraints) Performing minimization step: 2059. Total energy = 6908 kcal/mol (6902 without restraints) Performing minimization step: 2060. Total energy = 6905 kcal/mol (6899 without restraints) Performing minimization step: 2061. Total energy = 6902 kcal/mol (6896 without restraints) Performing minimization step: 2062. Total energy = 6899 kcal/mol (6893 without restraints) Performing minimization step: 2063. Total energy = 6896 kcal/mol (6890 without restraints) Performing minimization step: 2064. Total energy = 6893 kcal/mol (6887 without restraints) Performing minimization step: 2065. Total energy = 6890 kcal/mol (6885 without restraints) Performing minimization step: 2066. Total energy = 6887 kcal/mol (6882 without restraints) Performing minimization step: 2067. Total energy = 6885 kcal/mol (6879 without restraints) Performing minimization step: 2068. Total energy = 6882 kcal/mol (6876 without restraints) Performing minimization step: 2069. Total energy = 6879 kcal/mol (6873 without restraints) Performing minimization step: 2070. Total energy = 6876 kcal/mol (6870 without restraints) Performing minimization step: 2071. Total energy = 6873 kcal/mol (6867 without restraints) Performing minimization step: 2072. Total energy = 6870 kcal/mol (6864 without restraints) Performing minimization step: 2073. Total energy = 6867 kcal/mol (6861 without restraints) Performing minimization step: 2074. Total energy = 6864 kcal/mol (6858 without restraints) Performing minimization step: 2075. Total energy = 6861 kcal/mol (6855 without restraints) Performing minimization step: 2076. Total energy = 6858 kcal/mol (6852 without restraints) Performing minimization step: 2077. Total energy = 6855 kcal/mol (6849 without restraints) Performing minimization step: 2078. Total energy = 6852 kcal/mol (6846 without restraints) Performing minimization step: 2079. Total energy = 6849 kcal/mol (6844 without restraints) Performing minimization step: 2080. Total energy = 6846 kcal/mol (6841 without restraints) Performing minimization step: 2081. Total energy = 6844 kcal/mol (6838 without restraints) Performing minimization step: 2082. Total energy = 6841 kcal/mol (6835 without restraints) Performing minimization step: 2083. Total energy = 6838 kcal/mol (6832 without restraints) Performing minimization step: 2084. Total energy = 6835 kcal/mol (6829 without restraints) Performing minimization step: 2085. Total energy = 6832 kcal/mol (6826 without restraints) Performing minimization step: 2086. Total energy = 6829 kcal/mol (6823 without restraints) Performing minimization step: 2087. Total energy = 6826 kcal/mol (6820 without restraints) Performing minimization step: 2088. Total energy = 6823 kcal/mol (6817 without restraints) Performing minimization step: 2089. Total energy = 6820 kcal/mol (6815 without restraints) Performing minimization step: 2090. Total energy = 6818 kcal/mol (6812 without restraints) Performing minimization step: 2091. Total energy = 6815 kcal/mol (6809 without restraints) Performing minimization step: 2092. Total energy = 6812 kcal/mol (6806 without restraints) Performing minimization step: 2093. Total energy = 6809 kcal/mol (6803 without restraints) Performing minimization step: 2094. Total energy = 6806 kcal/mol (6800 without restraints) Performing minimization step: 2095. Total energy = 6803 kcal/mol (6797 without restraints) Performing minimization step: 2096. Total energy = 6800 kcal/mol (6794 without restraints) Performing minimization step: 2097. Total energy = 6797 kcal/mol (6792 without restraints) Performing minimization step: 2098. Total energy = 6794 kcal/mol (6789 without restraints) Performing minimization step: 2099. Total energy = 6792 kcal/mol (6786 without restraints) Performing minimization step: 2100. Total energy = 6789 kcal/mol (6783 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 6786 kcal/mol (6780 without restraints) Performing minimization step: 2102. Total energy = 6783 kcal/mol (6777 without restraints) Performing minimization step: 2103. Total energy = 6780 kcal/mol (6774 without restraints) Performing minimization step: 2104. Total energy = 6777 kcal/mol (6772 without restraints) Performing minimization step: 2105. Total energy = 6774 kcal/mol (6769 without restraints) Performing minimization step: 2106. Total energy = 6772 kcal/mol (6766 without restraints) Performing minimization step: 2107. Total energy = 6769 kcal/mol (6763 without restraints) Performing minimization step: 2108. Total energy = 6766 kcal/mol (6760 without restraints) Performing minimization step: 2109. Total energy = 6763 kcal/mol (6757 without restraints) Performing minimization step: 2110. Total energy = 6760 kcal/mol (6754 without restraints) Performing minimization step: 2111. Total energy = 6757 kcal/mol (6752 without restraints) Performing minimization step: 2112. Total energy = 6755 kcal/mol (6749 without restraints) Performing minimization step: 2113. Total energy = 6752 kcal/mol (6746 without restraints) Performing minimization step: 2114. Total energy = 6749 kcal/mol (6743 without restraints) Performing minimization step: 2115. Total energy = 6746 kcal/mol (6740 without restraints) Performing minimization step: 2116. Total energy = 6743 kcal/mol (6737 without restraints) Performing minimization step: 2117. Total energy = 6740 kcal/mol (6735 without restraints) Performing minimization step: 2118. Total energy = 6738 kcal/mol (6732 without restraints) Performing minimization step: 2119. Total energy = 6735 kcal/mol (6729 without restraints) Performing minimization step: 2120. Total energy = 6732 kcal/mol (6726 without restraints) Performing minimization step: 2121. Total energy = 6729 kcal/mol (6723 without restraints) Performing minimization step: 2122. Total energy = 6726 kcal/mol (6720 without restraints) Performing minimization step: 2123. Total energy = 6723 kcal/mol (6718 without restraints) Performing minimization step: 2124. Total energy = 6721 kcal/mol (6715 without restraints) Performing minimization step: 2125. Total energy = 6718 kcal/mol (6712 without restraints) Performing minimization step: 2126. Total energy = 6715 kcal/mol (6709 without restraints) Performing minimization step: 2127. Total energy = 6712 kcal/mol (6706 without restraints) Performing minimization step: 2128. Total energy = 6709 kcal/mol (6704 without restraints) Performing minimization step: 2129. Total energy = 6707 kcal/mol (6701 without restraints) Performing minimization step: 2130. Total energy = 6704 kcal/mol (6698 without restraints) Performing minimization step: 2131. Total energy = 6701 kcal/mol (6695 without restraints) Performing minimization step: 2132. Total energy = 6698 kcal/mol (6692 without restraints) Performing minimization step: 2133. Total energy = 6695 kcal/mol (6690 without restraints) Performing minimization step: 2134. Total energy = 6693 kcal/mol (6687 without restraints) Performing minimization step: 2135. Total energy = 6690 kcal/mol (6684 without restraints) Performing minimization step: 2136. Total energy = 6687 kcal/mol (6681 without restraints) Performing minimization step: 2137. Total energy = 6684 kcal/mol (6678 without restraints) Performing minimization step: 2138. Total energy = 6681 kcal/mol (6676 without restraints) Performing minimization step: 2139. Total energy = 6679 kcal/mol (6673 without restraints) Performing minimization step: 2140. Total energy = 6676 kcal/mol (6670 without restraints) Performing minimization step: 2141. Total energy = 6673 kcal/mol (6667 without restraints) Performing minimization step: 2142. Total energy = 6670 kcal/mol (6665 without restraints) Performing minimization step: 2143. Total energy = 6667 kcal/mol (6662 without restraints) Performing minimization step: 2144. Total energy = 6665 kcal/mol (6659 without restraints) Performing minimization step: 2145. Total energy = 6662 kcal/mol (6656 without restraints) Performing minimization step: 2146. Total energy = 6659 kcal/mol (6653 without restraints) Performing minimization step: 2147. Total energy = 6656 kcal/mol (6651 without restraints) Performing minimization step: 2148. Total energy = 6654 kcal/mol (6648 without restraints) Performing minimization step: 2149. Total energy = 6651 kcal/mol (6645 without restraints) Performing minimization step: 2150. Total energy = 6648 kcal/mol (6642 without restraints) Performing minimization step: 2151. Total energy = 6645 kcal/mol (6640 without restraints) Performing minimization step: 2152. Total energy = 6643 kcal/mol (6637 without restraints) Performing minimization step: 2153. Total energy = 6640 kcal/mol (6634 without restraints) Performing minimization step: 2154. Total energy = 6637 kcal/mol (6631 without restraints) Performing minimization step: 2155. Total energy = 6634 kcal/mol (6629 without restraints) Performing minimization step: 2156. Total energy = 6632 kcal/mol (6626 without restraints) Performing minimization step: 2157. Total energy = 6629 kcal/mol (6623 without restraints) Performing minimization step: 2158. Total energy = 6626 kcal/mol (6620 without restraints) Performing minimization step: 2159. Total energy = 6623 kcal/mol (6618 without restraints) Performing minimization step: 2160. Total energy = 6621 kcal/mol (6615 without restraints) Performing minimization step: 2161. Total energy = 6618 kcal/mol (6612 without restraints) Performing minimization step: 2162. Total energy = 6615 kcal/mol (6609 without restraints) Performing minimization step: 2163. Total energy = 6612 kcal/mol (6607 without restraints) Performing minimization step: 2164. Total energy = 6610 kcal/mol (6604 without restraints) Performing minimization step: 2165. Total energy = 6607 kcal/mol (6601 without restraints) Performing minimization step: 2166. Total energy = 6604 kcal/mol (6599 without restraints) Performing minimization step: 2167. Total energy = 6601 kcal/mol (6596 without restraints) Performing minimization step: 2168. Total energy = 6599 kcal/mol (6593 without restraints) Performing minimization step: 2169. Total energy = 6596 kcal/mol (6590 without restraints) Performing minimization step: 2170. Total energy = 6593 kcal/mol (6588 without restraints) Performing minimization step: 2171. Total energy = 6591 kcal/mol (6585 without restraints) Performing minimization step: 2172. Total energy = 6588 kcal/mol (6582 without restraints) Performing minimization step: 2173. Total energy = 6585 kcal/mol (6579 without restraints) Performing minimization step: 2174. Total energy = 6582 kcal/mol (6577 without restraints) Performing minimization step: 2175. Total energy = 6580 kcal/mol (6574 without restraints) Performing minimization step: 2176. Total energy = 6577 kcal/mol (6571 without restraints) Performing minimization step: 2177. Total energy = 6574 kcal/mol (6569 without restraints) Performing minimization step: 2178. Total energy = 6572 kcal/mol (6566 without restraints) Performing minimization step: 2179. Total energy = 6569 kcal/mol (6563 without restraints) Performing minimization step: 2180. Total energy = 6566 kcal/mol (6561 without restraints) Performing minimization step: 2181. Total energy = 6563 kcal/mol (6558 without restraints) Performing minimization step: 2182. Total energy = 6561 kcal/mol (6555 without restraints) Performing minimization step: 2183. Total energy = 6558 kcal/mol (6552 without restraints) Performing minimization step: 2184. Total energy = 6555 kcal/mol (6550 without restraints) Performing minimization step: 2185. Total energy = 6553 kcal/mol (6547 without restraints) Performing minimization step: 2186. Total energy = 6550 kcal/mol (6544 without restraints) Performing minimization step: 2187. Total energy = 6547 kcal/mol (6542 without restraints) Performing minimization step: 2188. Total energy = 6545 kcal/mol (6539 without restraints) Performing minimization step: 2189. Total energy = 6542 kcal/mol (6536 without restraints) Performing minimization step: 2190. Total energy = 6539 kcal/mol (6534 without restraints) Performing minimization step: 2191. Total energy = 6537 kcal/mol (6531 without restraints) Performing minimization step: 2192. Total energy = 6534 kcal/mol (6528 without restraints) Performing minimization step: 2193. Total energy = 6531 kcal/mol (6526 without restraints) Performing minimization step: 2194. Total energy = 6529 kcal/mol (6523 without restraints) Performing minimization step: 2195. Total energy = 6526 kcal/mol (6520 without restraints) Performing minimization step: 2196. Total energy = 6523 kcal/mol (6518 without restraints) Performing minimization step: 2197. Total energy = 6521 kcal/mol (6515 without restraints) Performing minimization step: 2198. Total energy = 6518 kcal/mol (6512 without restraints) Performing minimization step: 2199. Total energy = 6515 kcal/mol (6510 without restraints) Performing minimization step: 2200. Total energy = 6513 kcal/mol (6507 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 6510 kcal/mol (6504 without restraints) Performing minimization step: 2202. Total energy = 6507 kcal/mol (6502 without restraints) Performing minimization step: 2203. Total energy = 6505 kcal/mol (6499 without restraints) Performing minimization step: 2204. Total energy = 6502 kcal/mol (6496 without restraints) Performing minimization step: 2205. Total energy = 6499 kcal/mol (6494 without restraints) Performing minimization step: 2206. Total energy = 6497 kcal/mol (6491 without restraints) Performing minimization step: 2207. Total energy = 6494 kcal/mol (6488 without restraints) Performing minimization step: 2208. Total energy = 6491 kcal/mol (6486 without restraints) Performing minimization step: 2209. Total energy = 6489 kcal/mol (6483 without restraints) Performing minimization step: 2210. Total energy = 6486 kcal/mol (6480 without restraints) Performing minimization step: 2211. Total energy = 6483 kcal/mol (6478 without restraints) Performing minimization step: 2212. Total energy = 6481 kcal/mol (6475 without restraints) Performing minimization step: 2213. Total energy = 6478 kcal/mol (6473 without restraints) Performing minimization step: 2214. Total energy = 6475 kcal/mol (6470 without restraints) Performing minimization step: 2215. Total energy = 6473 kcal/mol (6467 without restraints) Performing minimization step: 2216. Total energy = 6470 kcal/mol (6465 without restraints) Performing minimization step: 2217. Total energy = 6468 kcal/mol (6462 without restraints) Performing minimization step: 2218. Total energy = 6465 kcal/mol (6459 without restraints) Performing minimization step: 2219. Total energy = 6462 kcal/mol (6457 without restraints) Performing minimization step: 2220. Total energy = 6460 kcal/mol (6454 without restraints) Performing minimization step: 2221. Total energy = 6457 kcal/mol (6452 without restraints) Performing minimization step: 2222. Total energy = 6454 kcal/mol (6449 without restraints) Performing minimization step: 2223. Total energy = 6452 kcal/mol (6446 without restraints) Performing minimization step: 2224. Total energy = 6449 kcal/mol (6444 without restraints) Performing minimization step: 2225. Total energy = 6447 kcal/mol (6441 without restraints) Performing minimization step: 2226. Total energy = 6444 kcal/mol (6438 without restraints) Performing minimization step: 2227. Total energy = 6441 kcal/mol (6436 without restraints) Performing minimization step: 2228. Total energy = 6439 kcal/mol (6433 without restraints) Performing minimization step: 2229. Total energy = 6436 kcal/mol (6431 without restraints) Performing minimization step: 2230. Total energy = 6434 kcal/mol (6428 without restraints) Performing minimization step: 2231. Total energy = 6431 kcal/mol (6425 without restraints) Performing minimization step: 2232. Total energy = 6428 kcal/mol (6423 without restraints) Performing minimization step: 2233. Total energy = 6426 kcal/mol (6420 without restraints) Performing minimization step: 2234. Total energy = 6423 kcal/mol (6418 without restraints) Performing minimization step: 2235. Total energy = 6421 kcal/mol (6415 without restraints) Performing minimization step: 2236. Total energy = 6418 kcal/mol (6412 without restraints) Performing minimization step: 2237. Total energy = 6415 kcal/mol (6410 without restraints) Performing minimization step: 2238. Total energy = 6413 kcal/mol (6407 without restraints) Performing minimization step: 2239. Total energy = 6410 kcal/mol (6405 without restraints) Performing minimization step: 2240. Total energy = 6408 kcal/mol (6402 without restraints) Performing minimization step: 2241. Total energy = 6405 kcal/mol (6399 without restraints) Performing minimization step: 2242. Total energy = 6402 kcal/mol (6397 without restraints) Performing minimization step: 2243. Total energy = 6400 kcal/mol (6394 without restraints) Performing minimization step: 2244. Total energy = 6397 kcal/mol (6392 without restraints) Performing minimization step: 2245. Total energy = 6395 kcal/mol (6389 without restraints) Performing minimization step: 2246. Total energy = 6392 kcal/mol (6387 without restraints) Performing minimization step: 2247. Total energy = 6390 kcal/mol (6384 without restraints) Performing minimization step: 2248. Total energy = 6387 kcal/mol (6381 without restraints) Performing minimization step: 2249. Total energy = 6384 kcal/mol (6379 without restraints) Performing minimization step: 2250. Total energy = 6382 kcal/mol (6376 without restraints) Performing minimization step: 2251. Total energy = 6379 kcal/mol (6374 without restraints) Performing minimization step: 2252. Total energy = 6377 kcal/mol (6371 without restraints) Performing minimization step: 2253. Total energy = 6374 kcal/mol (6369 without restraints) Performing minimization step: 2254. Total energy = 6372 kcal/mol (6366 without restraints) Performing minimization step: 2255. Total energy = 6369 kcal/mol (6363 without restraints) Performing minimization step: 2256. Total energy = 6366 kcal/mol (6361 without restraints) Performing minimization step: 2257. Total energy = 6364 kcal/mol (6358 without restraints) Performing minimization step: 2258. Total energy = 6361 kcal/mol (6356 without restraints) Performing minimization step: 2259. Total energy = 6359 kcal/mol (6353 without restraints) Performing minimization step: 2260. Total energy = 6356 kcal/mol (6351 without restraints) Performing minimization step: 2261. Total energy = 6354 kcal/mol (6348 without restraints) Performing minimization step: 2262. Total energy = 6351 kcal/mol (6346 without restraints) Performing minimization step: 2263. Total energy = 6349 kcal/mol (6343 without restraints) Performing minimization step: 2264. Total energy = 6346 kcal/mol (6341 without restraints) Performing minimization step: 2265. Total energy = 6343 kcal/mol (6338 without restraints) Performing minimization step: 2266. Total energy = 6341 kcal/mol (6335 without restraints) Performing minimization step: 2267. Total energy = 6338 kcal/mol (6333 without restraints) Performing minimization step: 2268. Total energy = 6336 kcal/mol (6330 without restraints) Performing minimization step: 2269. Total energy = 6333 kcal/mol (6328 without restraints) Performing minimization step: 2270. Total energy = 6331 kcal/mol (6325 without restraints) Performing minimization step: 2271. Total energy = 6328 kcal/mol (6323 without restraints) Performing minimization step: 2272. Total energy = 6326 kcal/mol (6320 without restraints) Performing minimization step: 2273. Total energy = 6323 kcal/mol (6318 without restraints) Performing minimization step: 2274. Total energy = 6321 kcal/mol (6315 without restraints) Performing minimization step: 2275. Total energy = 6318 kcal/mol (6313 without restraints) Performing minimization step: 2276. Total energy = 6316 kcal/mol (6310 without restraints) Performing minimization step: 2277. Total energy = 6313 kcal/mol (6308 without restraints) Performing minimization step: 2278. Total energy = 6311 kcal/mol (6305 without restraints) Performing minimization step: 2279. Total energy = 6308 kcal/mol (6303 without restraints) Performing minimization step: 2280. Total energy = 6306 kcal/mol (6300 without restraints) Performing minimization step: 2281. Total energy = 6303 kcal/mol (6298 without restraints) Performing minimization step: 2282. Total energy = 6300 kcal/mol (6295 without restraints) Performing minimization step: 2283. Total energy = 6298 kcal/mol (6293 without restraints) Performing minimization step: 2284. Total energy = 6295 kcal/mol (6290 without restraints) Performing minimization step: 2285. Total energy = 6293 kcal/mol (6287 without restraints) Performing minimization step: 2286. Total energy = 6290 kcal/mol (6285 without restraints) Performing minimization step: 2287. Total energy = 6288 kcal/mol (6282 without restraints) Performing minimization step: 2288. Total energy = 6285 kcal/mol (6280 without restraints) Performing minimization step: 2289. Total energy = 6283 kcal/mol (6277 without restraints) Performing minimization step: 2290. Total energy = 6280 kcal/mol (6275 without restraints) Performing minimization step: 2291. Total energy = 6278 kcal/mol (6272 without restraints) Performing minimization step: 2292. Total energy = 6275 kcal/mol (6270 without restraints) Performing minimization step: 2293. Total energy = 6273 kcal/mol (6268 without restraints) Performing minimization step: 2294. Total energy = 6270 kcal/mol (6265 without restraints) Performing minimization step: 2295. Total energy = 6268 kcal/mol (6263 without restraints) Performing minimization step: 2296. Total energy = 6265 kcal/mol (6260 without restraints) Performing minimization step: 2297. Total energy = 6263 kcal/mol (6258 without restraints) Performing minimization step: 2298. Total energy = 6261 kcal/mol (6255 without restraints) Performing minimization step: 2299. Total energy = 6258 kcal/mol (6253 without restraints) Performing minimization step: 2300. Total energy = 6256 kcal/mol (6250 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 6253 kcal/mol (6248 without restraints) Performing minimization step: 2302. Total energy = 6251 kcal/mol (6245 without restraints) Performing minimization step: 2303. Total energy = 6248 kcal/mol (6243 without restraints) Performing minimization step: 2304. Total energy = 6246 kcal/mol (6240 without restraints) Performing minimization step: 2305. Total energy = 6243 kcal/mol (6238 without restraints) Performing minimization step: 2306. Total energy = 6241 kcal/mol (6235 without restraints) Performing minimization step: 2307. Total energy = 6238 kcal/mol (6233 without restraints) Performing minimization step: 2308. Total energy = 6236 kcal/mol (6230 without restraints) Performing minimization step: 2309. Total energy = 6233 kcal/mol (6228 without restraints) Performing minimization step: 2310. Total energy = 6231 kcal/mol (6225 without restraints) Performing minimization step: 2311. Total energy = 6228 kcal/mol (6223 without restraints) Performing minimization step: 2312. Total energy = 6226 kcal/mol (6220 without restraints) Performing minimization step: 2313. Total energy = 6223 kcal/mol (6218 without restraints) Performing minimization step: 2314. Total energy = 6221 kcal/mol (6216 without restraints) Performing minimization step: 2315. Total energy = 6218 kcal/mol (6213 without restraints) Performing minimization step: 2316. Total energy = 6216 kcal/mol (6211 without restraints) Performing minimization step: 2317. Total energy = 6214 kcal/mol (6208 without restraints) Performing minimization step: 2318. Total energy = 6211 kcal/mol (6206 without restraints) Performing minimization step: 2319. Total energy = 6209 kcal/mol (6203 without restraints) Performing minimization step: 2320. Total energy = 6206 kcal/mol (6201 without restraints) Performing minimization step: 2321. Total energy = 6204 kcal/mol (6198 without restraints) Performing minimization step: 2322. Total energy = 6201 kcal/mol (6196 without restraints) Performing minimization step: 2323. Total energy = 6199 kcal/mol (6193 without restraints) Performing minimization step: 2324. Total energy = 6196 kcal/mol (6191 without restraints) Performing minimization step: 2325. Total energy = 6194 kcal/mol (6189 without restraints) Performing minimization step: 2326. Total energy = 6192 kcal/mol (6186 without restraints) Performing minimization step: 2327. Total energy = 6189 kcal/mol (6184 without restraints) Performing minimization step: 2328. Total energy = 6187 kcal/mol (6181 without restraints) Performing minimization step: 2329. Total energy = 6184 kcal/mol (6179 without restraints) Performing minimization step: 2330. Total energy = 6182 kcal/mol (6176 without restraints) Performing minimization step: 2331. Total energy = 6179 kcal/mol (6174 without restraints) Performing minimization step: 2332. Total energy = 6177 kcal/mol (6172 without restraints) Performing minimization step: 2333. Total energy = 6175 kcal/mol (6169 without restraints) Performing minimization step: 2334. Total energy = 6172 kcal/mol (6167 without restraints) Performing minimization step: 2335. Total energy = 6170 kcal/mol (6164 without restraints) Performing minimization step: 2336. Total energy = 6167 kcal/mol (6162 without restraints) Performing minimization step: 2337. Total energy = 6165 kcal/mol (6159 without restraints) Performing minimization step: 2338. Total energy = 6162 kcal/mol (6157 without restraints) Performing minimization step: 2339. Total energy = 6160 kcal/mol (6155 without restraints) Performing minimization step: 2340. Total energy = 6158 kcal/mol (6152 without restraints) Performing minimization step: 2341. Total energy = 6155 kcal/mol (6150 without restraints) Performing minimization step: 2342. Total energy = 6153 kcal/mol (6147 without restraints) Performing minimization step: 2343. Total energy = 6150 kcal/mol (6145 without restraints) Performing minimization step: 2344. Total energy = 6148 kcal/mol (6143 without restraints) Performing minimization step: 2345. Total energy = 6145 kcal/mol (6140 without restraints) Performing minimization step: 2346. Total energy = 6143 kcal/mol (6138 without restraints) Performing minimization step: 2347. Total energy = 6141 kcal/mol (6135 without restraints) Performing minimization step: 2348. Total energy = 6138 kcal/mol (6133 without restraints) Performing minimization step: 2349. Total energy = 6136 kcal/mol (6131 without restraints) Performing minimization step: 2350. Total energy = 6133 kcal/mol (6128 without restraints) Performing minimization step: 2351. Total energy = 6131 kcal/mol (6126 without restraints) Performing minimization step: 2352. Total energy = 6129 kcal/mol (6123 without restraints) Performing minimization step: 2353. Total energy = 6126 kcal/mol (6121 without restraints) Performing minimization step: 2354. Total energy = 6124 kcal/mol (6119 without restraints) Performing minimization step: 2355. Total energy = 6121 kcal/mol (6116 without restraints) Performing minimization step: 2356. Total energy = 6119 kcal/mol (6114 without restraints) Performing minimization step: 2357. Total energy = 6117 kcal/mol (6111 without restraints) Performing minimization step: 2358. Total energy = 6114 kcal/mol (6109 without restraints) Performing minimization step: 2359. Total energy = 6112 kcal/mol (6107 without restraints) Performing minimization step: 2360. Total energy = 6110 kcal/mol (6104 without restraints) Performing minimization step: 2361. Total energy = 6107 kcal/mol (6102 without restraints) Performing minimization step: 2362. Total energy = 6105 kcal/mol (6099 without restraints) Performing minimization step: 2363. Total energy = 6102 kcal/mol (6097 without restraints) Performing minimization step: 2364. Total energy = 6100 kcal/mol (6095 without restraints) Performing minimization step: 2365. Total energy = 6098 kcal/mol (6092 without restraints) Performing minimization step: 2366. Total energy = 6095 kcal/mol (6090 without restraints) Performing minimization step: 2367. Total energy = 6093 kcal/mol (6088 without restraints) Performing minimization step: 2368. Total energy = 6091 kcal/mol (6085 without restraints) Performing minimization step: 2369. Total energy = 6088 kcal/mol (6083 without restraints) Performing minimization step: 2370. Total energy = 6086 kcal/mol (6080 without restraints) Performing minimization step: 2371. Total energy = 6083 kcal/mol (6078 without restraints) Performing minimization step: 2372. Total energy = 6081 kcal/mol (6076 without restraints) Performing minimization step: 2373. Total energy = 6079 kcal/mol (6073 without restraints) Performing minimization step: 2374. Total energy = 6076 kcal/mol (6071 without restraints) Performing minimization step: 2375. Total energy = 6074 kcal/mol (6069 without restraints) Performing minimization step: 2376. Total energy = 6072 kcal/mol (6066 without restraints) Performing minimization step: 2377. Total energy = 6069 kcal/mol (6064 without restraints) Performing minimization step: 2378. Total energy = 6067 kcal/mol (6062 without restraints) Performing minimization step: 2379. Total energy = 6065 kcal/mol (6059 without restraints) Performing minimization step: 2380. Total energy = 6062 kcal/mol (6057 without restraints) Performing minimization step: 2381. Total energy = 6060 kcal/mol (6054 without restraints) Performing minimization step: 2382. Total energy = 6057 kcal/mol (6052 without restraints) Performing minimization step: 2383. Total energy = 6055 kcal/mol (6050 without restraints) Performing minimization step: 2384. Total energy = 6053 kcal/mol (6047 without restraints) Performing minimization step: 2385. Total energy = 6050 kcal/mol (6045 without restraints) Performing minimization step: 2386. Total energy = 6048 kcal/mol (6043 without restraints) Performing minimization step: 2387. Total energy = 6046 kcal/mol (6040 without restraints) Performing minimization step: 2388. Total energy = 6043 kcal/mol (6038 without restraints) Performing minimization step: 2389. Total energy = 6041 kcal/mol (6036 without restraints) Performing minimization step: 2390. Total energy = 6039 kcal/mol (6033 without restraints) Performing minimization step: 2391. Total energy = 6036 kcal/mol (6031 without restraints) Performing minimization step: 2392. Total energy = 6034 kcal/mol (6029 without restraints) Performing minimization step: 2393. Total energy = 6032 kcal/mol (6026 without restraints) Performing minimization step: 2394. Total energy = 6029 kcal/mol (6024 without restraints) Performing minimization step: 2395. Total energy = 6027 kcal/mol (6022 without restraints) Performing minimization step: 2396. Total energy = 6025 kcal/mol (6019 without restraints) Performing minimization step: 2397. Total energy = 6022 kcal/mol (6017 without restraints) Performing minimization step: 2398. Total energy = 6020 kcal/mol (6015 without restraints) Performing minimization step: 2399. Total energy = 6018 kcal/mol (6012 without restraints) Performing minimization step: 2400. Total energy = 6015 kcal/mol (6010 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 6013 kcal/mol (6008 without restraints) Performing minimization step: 2402. Total energy = 6011 kcal/mol (6005 without restraints) Performing minimization step: 2403. Total energy = 6008 kcal/mol (6003 without restraints) Performing minimization step: 2404. Total energy = 6006 kcal/mol (6001 without restraints) Performing minimization step: 2405. Total energy = 6004 kcal/mol (5999 without restraints) Performing minimization step: 2406. Total energy = 6001 kcal/mol (5996 without restraints) Performing minimization step: 2407. Total energy = 5999 kcal/mol (5994 without restraints) Performing minimization step: 2408. Total energy = 5997 kcal/mol (5992 without restraints) Performing minimization step: 2409. Total energy = 5995 kcal/mol (5989 without restraints) Performing minimization step: 2410. Total energy = 5992 kcal/mol (5987 without restraints) Performing minimization step: 2411. Total energy = 5990 kcal/mol (5985 without restraints) Performing minimization step: 2412. Total energy = 5988 kcal/mol (5982 without restraints) Performing minimization step: 2413. Total energy = 5985 kcal/mol (5980 without restraints) Performing minimization step: 2414. Total energy = 5983 kcal/mol (5978 without restraints) Performing minimization step: 2415. Total energy = 5981 kcal/mol (5975 without restraints) Performing minimization step: 2416. Total energy = 5978 kcal/mol (5973 without restraints) Performing minimization step: 2417. Total energy = 5976 kcal/mol (5971 without restraints) Performing minimization step: 2418. Total energy = 5974 kcal/mol (5969 without restraints) Performing minimization step: 2419. Total energy = 5972 kcal/mol (5966 without restraints) Performing minimization step: 2420. Total energy = 5969 kcal/mol (5964 without restraints) Performing minimization step: 2421. Total energy = 5967 kcal/mol (5962 without restraints) Performing minimization step: 2422. Total energy = 5965 kcal/mol (5959 without restraints) Performing minimization step: 2423. Total energy = 5962 kcal/mol (5957 without restraints) Performing minimization step: 2424. Total energy = 5960 kcal/mol (5955 without restraints) Performing minimization step: 2425. Total energy = 5958 kcal/mol (5953 without restraints) Performing minimization step: 2426. Total energy = 5955 kcal/mol (5950 without restraints) Performing minimization step: 2427. Total energy = 5953 kcal/mol (5948 without restraints) Performing minimization step: 2428. Total energy = 5951 kcal/mol (5946 without restraints) Performing minimization step: 2429. Total energy = 5949 kcal/mol (5943 without restraints) Performing minimization step: 2430. Total energy = 5946 kcal/mol (5941 without restraints) Performing minimization step: 2431. Total energy = 5944 kcal/mol (5939 without restraints) Performing minimization step: 2432. Total energy = 5942 kcal/mol (5937 without restraints) Performing minimization step: 2433. Total energy = 5940 kcal/mol (5934 without restraints) Performing minimization step: 2434. Total energy = 5937 kcal/mol (5932 without restraints) Performing minimization step: 2435. Total energy = 5935 kcal/mol (5930 without restraints) Performing minimization step: 2436. Total energy = 5933 kcal/mol (5927 without restraints) Performing minimization step: 2437. Total energy = 5930 kcal/mol (5925 without restraints) Performing minimization step: 2438. Total energy = 5928 kcal/mol (5923 without restraints) Performing minimization step: 2439. Total energy = 5926 kcal/mol (5921 without restraints) Performing minimization step: 2440. Total energy = 5924 kcal/mol (5918 without restraints) Performing minimization step: 2441. Total energy = 5921 kcal/mol (5916 without restraints) Performing minimization step: 2442. Total energy = 5919 kcal/mol (5914 without restraints) Performing minimization step: 2443. Total energy = 5917 kcal/mol (5912 without restraints) Performing minimization step: 2444. Total energy = 5915 kcal/mol (5909 without restraints) Performing minimization step: 2445. Total energy = 5912 kcal/mol (5907 without restraints) Performing minimization step: 2446. Total energy = 5910 kcal/mol (5905 without restraints) Performing minimization step: 2447. Total energy = 5908 kcal/mol (5903 without restraints) Performing minimization step: 2448. Total energy = 5906 kcal/mol (5900 without restraints) Performing minimization step: 2449. Total energy = 5903 kcal/mol (5898 without restraints) Performing minimization step: 2450. Total energy = 5901 kcal/mol (5896 without restraints) Performing minimization step: 2451. Total energy = 5899 kcal/mol (5894 without restraints) Performing minimization step: 2452. Total energy = 5897 kcal/mol (5891 without restraints) Performing minimization step: 2453. Total energy = 5894 kcal/mol (5889 without restraints) Performing minimization step: 2454. Total energy = 5892 kcal/mol (5887 without restraints) Performing minimization step: 2455. Total energy = 5890 kcal/mol (5885 without restraints) Performing minimization step: 2456. Total energy = 5888 kcal/mol (5882 without restraints) Performing minimization step: 2457. Total energy = 5885 kcal/mol (5880 without restraints) Performing minimization step: 2458. Total energy = 5883 kcal/mol (5878 without restraints) Performing minimization step: 2459. Total energy = 5881 kcal/mol (5876 without restraints) Performing minimization step: 2460. Total energy = 5879 kcal/mol (5873 without restraints) Performing minimization step: 2461. Total energy = 5876 kcal/mol (5871 without restraints) Performing minimization step: 2462. Total energy = 5874 kcal/mol (5869 without restraints) Performing minimization step: 2463. Total energy = 5872 kcal/mol (5867 without restraints) Performing minimization step: 2464. Total energy = 5870 kcal/mol (5865 without restraints) Performing minimization step: 2465. Total energy = 5867 kcal/mol (5862 without restraints) Performing minimization step: 2466. Total energy = 5865 kcal/mol (5860 without restraints) Performing minimization step: 2467. Total energy = 5863 kcal/mol (5858 without restraints) Performing minimization step: 2468. Total energy = 5861 kcal/mol (5856 without restraints) Performing minimization step: 2469. Total energy = 5859 kcal/mol (5853 without restraints) Performing minimization step: 2470. Total energy = 5856 kcal/mol (5851 without restraints) Performing minimization step: 2471. Total energy = 5854 kcal/mol (5849 without restraints) Performing minimization step: 2472. Total energy = 5852 kcal/mol (5847 without restraints) Performing minimization step: 2473. Total energy = 5850 kcal/mol (5845 without restraints) Performing minimization step: 2474. Total energy = 5847 kcal/mol (5842 without restraints) Performing minimization step: 2475. Total energy = 5845 kcal/mol (5840 without restraints) Performing minimization step: 2476. Total energy = 5843 kcal/mol (5838 without restraints) Performing minimization step: 2477. Total energy = 5841 kcal/mol (5836 without restraints) Performing minimization step: 2478. Total energy = 5839 kcal/mol (5833 without restraints) Performing minimization step: 2479. Total energy = 5836 kcal/mol (5831 without restraints) Performing minimization step: 2480. Total energy = 5834 kcal/mol (5829 without restraints) Performing minimization step: 2481. Total energy = 5832 kcal/mol (5827 without restraints) Performing minimization step: 2482. Total energy = 5830 kcal/mol (5825 without restraints) Performing minimization step: 2483. Total energy = 5828 kcal/mol (5822 without restraints) Performing minimization step: 2484. Total energy = 5825 kcal/mol (5820 without restraints) Performing minimization step: 2485. Total energy = 5823 kcal/mol (5818 without restraints) Performing minimization step: 2486. Total energy = 5821 kcal/mol (5816 without restraints) Performing minimization step: 2487. Total energy = 5819 kcal/mol (5814 without restraints) Performing minimization step: 2488. Total energy = 5817 kcal/mol (5811 without restraints) Performing minimization step: 2489. Total energy = 5814 kcal/mol (5809 without restraints) Performing minimization step: 2490. Total energy = 5812 kcal/mol (5807 without restraints) Performing minimization step: 2491. Total energy = 5810 kcal/mol (5805 without restraints) Performing minimization step: 2492. Total energy = 5808 kcal/mol (5803 without restraints) Performing minimization step: 2493. Total energy = 5806 kcal/mol (5800 without restraints) Performing minimization step: 2494. Total energy = 5803 kcal/mol (5798 without restraints) Performing minimization step: 2495. Total energy = 5801 kcal/mol (5796 without restraints) Performing minimization step: 2496. Total energy = 5799 kcal/mol (5794 without restraints) Performing minimization step: 2497. Total energy = 5797 kcal/mol (5792 without restraints) Performing minimization step: 2498. Total energy = 5795 kcal/mol (5790 without restraints) Performing minimization step: 2499. Total energy = 5792 kcal/mol (5787 without restraints) Performing minimization step: 2500. Total energy = 5790 kcal/mol (5785 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 5788 kcal/mol (5783 without restraints) Performing minimization step: 2502. Total energy = 5786 kcal/mol (5781 without restraints) Performing minimization step: 2503. Total energy = 5784 kcal/mol (5779 without restraints) Performing minimization step: 2504. Total energy = 5782 kcal/mol (5776 without restraints) Performing minimization step: 2505. Total energy = 5779 kcal/mol (5774 without restraints) Performing minimization step: 2506. Total energy = 5777 kcal/mol (5772 without restraints) Performing minimization step: 2507. Total energy = 5775 kcal/mol (5770 without restraints) Performing minimization step: 2508. Total energy = 5773 kcal/mol (5768 without restraints) Performing minimization step: 2509. Total energy = 5771 kcal/mol (5766 without restraints) Performing minimization step: 2510. Total energy = 5769 kcal/mol (5763 without restraints) Performing minimization step: 2511. Total energy = 5766 kcal/mol (5761 without restraints) Performing minimization step: 2512. Total energy = 5764 kcal/mol (5759 without restraints) Performing minimization step: 2513. Total energy = 5762 kcal/mol (5757 without restraints) Performing minimization step: 2514. Total energy = 5760 kcal/mol (5755 without restraints) Performing minimization step: 2515. Total energy = 5758 kcal/mol (5753 without restraints) Performing minimization step: 2516. Total energy = 5756 kcal/mol (5750 without restraints) Performing minimization step: 2517. Total energy = 5753 kcal/mol (5748 without restraints) Performing minimization step: 2518. Total energy = 5751 kcal/mol (5746 without restraints) Performing minimization step: 2519. Total energy = 5749 kcal/mol (5744 without restraints) Performing minimization step: 2520. Total energy = 5747 kcal/mol (5742 without restraints) Performing minimization step: 2521. Total energy = 5745 kcal/mol (5740 without restraints) Performing minimization step: 2522. Total energy = 5743 kcal/mol (5738 without restraints) Performing minimization step: 2523. Total energy = 5741 kcal/mol (5735 without restraints) Performing minimization step: 2524. Total energy = 5738 kcal/mol (5733 without restraints) Performing minimization step: 2525. Total energy = 5736 kcal/mol (5731 without restraints) Performing minimization step: 2526. Total energy = 5734 kcal/mol (5729 without restraints) Performing minimization step: 2527. Total energy = 5732 kcal/mol (5727 without restraints) Performing minimization step: 2528. Total energy = 5730 kcal/mol (5725 without restraints) Performing minimization step: 2529. Total energy = 5728 kcal/mol (5723 without restraints) Performing minimization step: 2530. Total energy = 5725 kcal/mol (5720 without restraints) Performing minimization step: 2531. Total energy = 5723 kcal/mol (5718 without restraints) Performing minimization step: 2532. Total energy = 5721 kcal/mol (5716 without restraints) Performing minimization step: 2533. Total energy = 5719 kcal/mol (5714 without restraints) Performing minimization step: 2534. Total energy = 5717 kcal/mol (5712 without restraints) Performing minimization step: 2535. Total energy = 5715 kcal/mol (5710 without restraints) Performing minimization step: 2536. Total energy = 5713 kcal/mol (5708 without restraints) Performing minimization step: 2537. Total energy = 5711 kcal/mol (5705 without restraints) Performing minimization step: 2538. Total energy = 5708 kcal/mol (5703 without restraints) Performing minimization step: 2539. Total energy = 5706 kcal/mol (5701 without restraints) Performing minimization step: 2540. Total energy = 5704 kcal/mol (5699 without restraints) Performing minimization step: 2541. Total energy = 5702 kcal/mol (5697 without restraints) Performing minimization step: 2542. Total energy = 5700 kcal/mol (5695 without restraints) Performing minimization step: 2543. Total energy = 5698 kcal/mol (5693 without restraints) Performing minimization step: 2544. Total energy = 5696 kcal/mol (5691 without restraints) Performing minimization step: 2545. Total energy = 5694 kcal/mol (5688 without restraints) Performing minimization step: 2546. Total energy = 5691 kcal/mol (5686 without restraints) Performing minimization step: 2547. Total energy = 5689 kcal/mol (5684 without restraints) Performing minimization step: 2548. Total energy = 5687 kcal/mol (5682 without restraints) Performing minimization step: 2549. Total energy = 5685 kcal/mol (5680 without restraints) Performing minimization step: 2550. Total energy = 5683 kcal/mol (5678 without restraints) Performing minimization step: 2551. Total energy = 5681 kcal/mol (5676 without restraints) Performing minimization step: 2552. Total energy = 5679 kcal/mol (5674 without restraints) Performing minimization step: 2553. Total energy = 5677 kcal/mol (5672 without restraints) Performing minimization step: 2554. Total energy = 5675 kcal/mol (5669 without restraints) Performing minimization step: 2555. Total energy = 5672 kcal/mol (5667 without restraints) Performing minimization step: 2556. Total energy = 5670 kcal/mol (5665 without restraints) Performing minimization step: 2557. Total energy = 5668 kcal/mol (5663 without restraints) Performing minimization step: 2558. Total energy = 5666 kcal/mol (5661 without restraints) Performing minimization step: 2559. Total energy = 5664 kcal/mol (5659 without restraints) Performing minimization step: 2560. Total energy = 5662 kcal/mol (5657 without restraints) Performing minimization step: 2561. Total energy = 5660 kcal/mol (5655 without restraints) Performing minimization step: 2562. Total energy = 5658 kcal/mol (5653 without restraints) Performing minimization step: 2563. Total energy = 5656 kcal/mol (5651 without restraints) Performing minimization step: 2564. Total energy = 5653 kcal/mol (5648 without restraints) Performing minimization step: 2565. Total energy = 5651 kcal/mol (5646 without restraints) Performing minimization step: 2566. Total energy = 5649 kcal/mol (5644 without restraints) Performing minimization step: 2567. Total energy = 5647 kcal/mol (5642 without restraints) Performing minimization step: 2568. Total energy = 5645 kcal/mol (5640 without restraints) Performing minimization step: 2569. Total energy = 5643 kcal/mol (5638 without restraints) Performing minimization step: 2570. Total energy = 5641 kcal/mol (5636 without restraints) Performing minimization step: 2571. Total energy = 5639 kcal/mol (5634 without restraints) Performing minimization step: 2572. Total energy = 5637 kcal/mol (5632 without restraints) Performing minimization step: 2573. Total energy = 5635 kcal/mol (5630 without restraints) Performing minimization step: 2574. Total energy = 5633 kcal/mol (5628 without restraints) Performing minimization step: 2575. Total energy = 5631 kcal/mol (5626 without restraints) Performing minimization step: 2576. Total energy = 5628 kcal/mol (5623 without restraints) Performing minimization step: 2577. Total energy = 5626 kcal/mol (5621 without restraints) Performing minimization step: 2578. Total energy = 5624 kcal/mol (5619 without restraints) Performing minimization step: 2579. Total energy = 5622 kcal/mol (5617 without restraints) Performing minimization step: 2580. Total energy = 5620 kcal/mol (5615 without restraints) Performing minimization step: 2581. Total energy = 5618 kcal/mol (5613 without restraints) Performing minimization step: 2582. Total energy = 5616 kcal/mol (5611 without restraints) Performing minimization step: 2583. Total energy = 5614 kcal/mol (5609 without restraints) Performing minimization step: 2584. Total energy = 5612 kcal/mol (5607 without restraints) Performing minimization step: 2585. Total energy = 5610 kcal/mol (5605 without restraints) Performing minimization step: 2586. Total energy = 5608 kcal/mol (5603 without restraints) Performing minimization step: 2587. Total energy = 5606 kcal/mol (5601 without restraints) Performing minimization step: 2588. Total energy = 5604 kcal/mol (5599 without restraints) Performing minimization step: 2589. Total energy = 5602 kcal/mol (5597 without restraints) Performing minimization step: 2590. Total energy = 5599 kcal/mol (5594 without restraints) Performing minimization step: 2591. Total energy = 5597 kcal/mol (5592 without restraints) Performing minimization step: 2592. Total energy = 5595 kcal/mol (5590 without restraints) Performing minimization step: 2593. Total energy = 5593 kcal/mol (5588 without restraints) Performing minimization step: 2594. Total energy = 5591 kcal/mol (5586 without restraints) Performing minimization step: 2595. Total energy = 5589 kcal/mol (5584 without restraints) Performing minimization step: 2596. Total energy = 5587 kcal/mol (5582 without restraints) Performing minimization step: 2597. Total energy = 5585 kcal/mol (5580 without restraints) Performing minimization step: 2598. Total energy = 5583 kcal/mol (5578 without restraints) Performing minimization step: 2599. Total energy = 5581 kcal/mol (5576 without restraints) Performing minimization step: 2600. Total energy = 5579 kcal/mol (5574 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 5577 kcal/mol (5572 without restraints) Performing minimization step: 2602. Total energy = 5575 kcal/mol (5570 without restraints) Performing minimization step: 2603. Total energy = 5573 kcal/mol (5568 without restraints) Performing minimization step: 2604. Total energy = 5571 kcal/mol (5566 without restraints) Performing minimization step: 2605. Total energy = 5569 kcal/mol (5564 without restraints) Performing minimization step: 2606. Total energy = 5567 kcal/mol (5562 without restraints) Performing minimization step: 2607. Total energy = 5565 kcal/mol (5560 without restraints) Performing minimization step: 2608. Total energy = 5563 kcal/mol (5558 without restraints) Performing minimization step: 2609. Total energy = 5561 kcal/mol (5556 without restraints) Performing minimization step: 2610. Total energy = 5558 kcal/mol (5554 without restraints) Performing minimization step: 2611. Total energy = 5556 kcal/mol (5551 without restraints) Performing minimization step: 2612. Total energy = 5554 kcal/mol (5549 without restraints) Performing minimization step: 2613. Total energy = 5552 kcal/mol (5547 without restraints) Performing minimization step: 2614. Total energy = 5550 kcal/mol (5545 without restraints) Performing minimization step: 2615. Total energy = 5548 kcal/mol (5543 without restraints) Performing minimization step: 2616. Total energy = 5546 kcal/mol (5541 without restraints) Performing minimization step: 2617. Total energy = 5544 kcal/mol (5539 without restraints) Performing minimization step: 2618. Total energy = 5542 kcal/mol (5537 without restraints) Performing minimization step: 2619. Total energy = 5540 kcal/mol (5535 without restraints) Performing minimization step: 2620. Total energy = 5538 kcal/mol (5533 without restraints) Performing minimization step: 2621. Total energy = 5536 kcal/mol (5531 without restraints) Performing minimization step: 2622. Total energy = 5534 kcal/mol (5529 without restraints) Performing minimization step: 2623. Total energy = 5532 kcal/mol (5527 without restraints) Performing minimization step: 2624. Total energy = 5530 kcal/mol (5525 without restraints) Performing minimization step: 2625. Total energy = 5528 kcal/mol (5523 without restraints) Performing minimization step: 2626. Total energy = 5526 kcal/mol (5521 without restraints) Performing minimization step: 2627. Total energy = 5524 kcal/mol (5519 without restraints) Performing minimization step: 2628. Total energy = 5522 kcal/mol (5517 without restraints) Performing minimization step: 2629. Total energy = 5520 kcal/mol (5515 without restraints) Performing minimization step: 2630. Total energy = 5518 kcal/mol (5513 without restraints) Performing minimization step: 2631. Total energy = 5516 kcal/mol (5511 without restraints) Performing minimization step: 2632. Total energy = 5514 kcal/mol (5509 without restraints) Performing minimization step: 2633. Total energy = 5512 kcal/mol (5507 without restraints) Performing minimization step: 2634. Total energy = 5510 kcal/mol (5505 without restraints) Performing minimization step: 2635. Total energy = 5508 kcal/mol (5503 without restraints) Performing minimization step: 2636. Total energy = 5506 kcal/mol (5501 without restraints) Performing minimization step: 2637. Total energy = 5504 kcal/mol (5499 without restraints) Performing minimization step: 2638. Total energy = 5502 kcal/mol (5497 without restraints) Performing minimization step: 2639. Total energy = 5500 kcal/mol (5495 without restraints) Performing minimization step: 2640. Total energy = 5498 kcal/mol (5493 without restraints) Performing minimization step: 2641. Total energy = 5496 kcal/mol (5491 without restraints) Performing minimization step: 2642. Total energy = 5494 kcal/mol (5489 without restraints) Performing minimization step: 2643. Total energy = 5492 kcal/mol (5487 without restraints) Performing minimization step: 2644. Total energy = 5490 kcal/mol (5485 without restraints) Performing minimization step: 2645. Total energy = 5488 kcal/mol (5483 without restraints) Performing minimization step: 2646. Total energy = 5486 kcal/mol (5481 without restraints) Performing minimization step: 2647. Total energy = 5484 kcal/mol (5479 without restraints) Performing minimization step: 2648. Total energy = 5482 kcal/mol (5477 without restraints) Performing minimization step: 2649. Total energy = 5480 kcal/mol (5475 without restraints) Performing minimization step: 2650. Total energy = 5478 kcal/mol (5473 without restraints) Performing minimization step: 2651. Total energy = 5476 kcal/mol (5471 without restraints) Performing minimization step: 2652. Total energy = 5474 kcal/mol (5469 without restraints) Performing minimization step: 2653. Total energy = 5472 kcal/mol (5467 without restraints) Performing minimization step: 2654. Total energy = 5470 kcal/mol (5465 without restraints) Performing minimization step: 2655. Total energy = 5468 kcal/mol (5463 without restraints) Performing minimization step: 2656. Total energy = 5466 kcal/mol (5461 without restraints) Performing minimization step: 2657. Total energy = 5464 kcal/mol (5459 without restraints) Performing minimization step: 2658. Total energy = 5462 kcal/mol (5457 without restraints) Performing minimization step: 2659. Total energy = 5460 kcal/mol (5455 without restraints) Performing minimization step: 2660. Total energy = 5458 kcal/mol (5453 without restraints) Performing minimization step: 2661. Total energy = 5456 kcal/mol (5451 without restraints) Performing minimization step: 2662. Total energy = 5454 kcal/mol (5449 without restraints) Performing minimization step: 2663. Total energy = 5452 kcal/mol (5447 without restraints) Performing minimization step: 2664. Total energy = 5450 kcal/mol (5445 without restraints) Performing minimization step: 2665. Total energy = 5448 kcal/mol (5443 without restraints) Performing minimization step: 2666. Total energy = 5446 kcal/mol (5442 without restraints) Performing minimization step: 2667. Total energy = 5444 kcal/mol (5440 without restraints) Performing minimization step: 2668. Total energy = 5442 kcal/mol (5438 without restraints) Performing minimization step: 2669. Total energy = 5440 kcal/mol (5436 without restraints) Performing minimization step: 2670. Total energy = 5439 kcal/mol (5434 without restraints) Performing minimization step: 2671. Total energy = 5437 kcal/mol (5432 without restraints) Performing minimization step: 2672. Total energy = 5435 kcal/mol (5430 without restraints) Performing minimization step: 2673. Total energy = 5433 kcal/mol (5428 without restraints) Performing minimization step: 2674. Total energy = 5431 kcal/mol (5426 without restraints) Performing minimization step: 2675. Total energy = 5429 kcal/mol (5424 without restraints) Performing minimization step: 2676. Total energy = 5427 kcal/mol (5422 without restraints) Performing minimization step: 2677. Total energy = 5425 kcal/mol (5420 without restraints) Performing minimization step: 2678. Total energy = 5423 kcal/mol (5418 without restraints) Performing minimization step: 2679. Total energy = 5421 kcal/mol (5416 without restraints) Performing minimization step: 2680. Total energy = 5419 kcal/mol (5414 without restraints) Performing minimization step: 2681. Total energy = 5417 kcal/mol (5412 without restraints) Performing minimization step: 2682. Total energy = 5415 kcal/mol (5410 without restraints) Performing minimization step: 2683. Total energy = 5413 kcal/mol (5408 without restraints) Performing minimization step: 2684. Total energy = 5411 kcal/mol (5406 without restraints) Performing minimization step: 2685. Total energy = 5409 kcal/mol (5404 without restraints) Performing minimization step: 2686. Total energy = 5407 kcal/mol (5402 without restraints) Performing minimization step: 2687. Total energy = 5405 kcal/mol (5401 without restraints) Performing minimization step: 2688. Total energy = 5403 kcal/mol (5399 without restraints) Performing minimization step: 2689. Total energy = 5401 kcal/mol (5397 without restraints) Performing minimization step: 2690. Total energy = 5400 kcal/mol (5395 without restraints) Performing minimization step: 2691. Total energy = 5398 kcal/mol (5393 without restraints) Performing minimization step: 2692. Total energy = 5396 kcal/mol (5391 without restraints) Performing minimization step: 2693. Total energy = 5394 kcal/mol (5389 without restraints) Performing minimization step: 2694. Total energy = 5392 kcal/mol (5387 without restraints) Performing minimization step: 2695. Total energy = 5390 kcal/mol (5385 without restraints) Performing minimization step: 2696. Total energy = 5388 kcal/mol (5383 without restraints) Performing minimization step: 2697. Total energy = 5386 kcal/mol (5381 without restraints) Performing minimization step: 2698. Total energy = 5384 kcal/mol (5379 without restraints) Performing minimization step: 2699. Total energy = 5382 kcal/mol (5377 without restraints) Performing minimization step: 2700. Total energy = 5380 kcal/mol (5375 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 5378 kcal/mol (5373 without restraints) Performing minimization step: 2702. Total energy = 5376 kcal/mol (5372 without restraints) Performing minimization step: 2703. Total energy = 5374 kcal/mol (5370 without restraints) Performing minimization step: 2704. Total energy = 5373 kcal/mol (5368 without restraints) Performing minimization step: 2705. Total energy = 5371 kcal/mol (5366 without restraints) Performing minimization step: 2706. Total energy = 5369 kcal/mol (5364 without restraints) Performing minimization step: 2707. Total energy = 5367 kcal/mol (5362 without restraints) Performing minimization step: 2708. Total energy = 5365 kcal/mol (5360 without restraints) Performing minimization step: 2709. Total energy = 5363 kcal/mol (5358 without restraints) Performing minimization step: 2710. Total energy = 5361 kcal/mol (5356 without restraints) Performing minimization step: 2711. Total energy = 5359 kcal/mol (5354 without restraints) Performing minimization step: 2712. Total energy = 5357 kcal/mol (5352 without restraints) Performing minimization step: 2713. Total energy = 5355 kcal/mol (5350 without restraints) Performing minimization step: 2714. Total energy = 5353 kcal/mol (5349 without restraints) Performing minimization step: 2715. Total energy = 5351 kcal/mol (5347 without restraints) Performing minimization step: 2716. Total energy = 5350 kcal/mol (5345 without restraints) Performing minimization step: 2717. Total energy = 5348 kcal/mol (5343 without restraints) Performing minimization step: 2718. Total energy = 5346 kcal/mol (5341 without restraints) Performing minimization step: 2719. Total energy = 5344 kcal/mol (5339 without restraints) Performing minimization step: 2720. Total energy = 5342 kcal/mol (5337 without restraints) Performing minimization step: 2721. Total energy = 5340 kcal/mol (5335 without restraints) Performing minimization step: 2722. Total energy = 5338 kcal/mol (5333 without restraints) Performing minimization step: 2723. Total energy = 5336 kcal/mol (5331 without restraints) Performing minimization step: 2724. Total energy = 5334 kcal/mol (5330 without restraints) Performing minimization step: 2725. Total energy = 5332 kcal/mol (5328 without restraints) Performing minimization step: 2726. Total energy = 5331 kcal/mol (5326 without restraints) Performing minimization step: 2727. Total energy = 5329 kcal/mol (5324 without restraints) Performing minimization step: 2728. Total energy = 5327 kcal/mol (5322 without restraints) Performing minimization step: 2729. Total energy = 5325 kcal/mol (5320 without restraints) Performing minimization step: 2730. Total energy = 5323 kcal/mol (5318 without restraints) Performing minimization step: 2731. Total energy = 5321 kcal/mol (5316 without restraints) Performing minimization step: 2732. Total energy = 5319 kcal/mol (5314 without restraints) Performing minimization step: 2733. Total energy = 5317 kcal/mol (5313 without restraints) Performing minimization step: 2734. Total energy = 5315 kcal/mol (5311 without restraints) Performing minimization step: 2735. Total energy = 5314 kcal/mol (5309 without restraints) Performing minimization step: 2736. Total energy = 5312 kcal/mol (5307 without restraints) Performing minimization step: 2737. Total energy = 5310 kcal/mol (5305 without restraints) Performing minimization step: 2738. Total energy = 5308 kcal/mol (5303 without restraints) Performing minimization step: 2739. Total energy = 5306 kcal/mol (5301 without restraints) Performing minimization step: 2740. Total energy = 5304 kcal/mol (5299 without restraints) Performing minimization step: 2741. Total energy = 5302 kcal/mol (5298 without restraints) Performing minimization step: 2742. Total energy = 5300 kcal/mol (5296 without restraints) Performing minimization step: 2743. Total energy = 5299 kcal/mol (5294 without restraints) Performing minimization step: 2744. Total energy = 5297 kcal/mol (5292 without restraints) Performing minimization step: 2745. Total energy = 5295 kcal/mol (5290 without restraints) Performing minimization step: 2746. Total energy = 5293 kcal/mol (5288 without restraints) Performing minimization step: 2747. Total energy = 5291 kcal/mol (5286 without restraints) Performing minimization step: 2748. Total energy = 5289 kcal/mol (5284 without restraints) Performing minimization step: 2749. Total energy = 5287 kcal/mol (5283 without restraints) Performing minimization step: 2750. Total energy = 5285 kcal/mol (5281 without restraints) Performing minimization step: 2751. Total energy = 5284 kcal/mol (5279 without restraints) Performing minimization step: 2752. Total energy = 5282 kcal/mol (5277 without restraints) Performing minimization step: 2753. Total energy = 5280 kcal/mol (5275 without restraints) Performing minimization step: 2754. Total energy = 5278 kcal/mol (5273 without restraints) Performing minimization step: 2755. Total energy = 5276 kcal/mol (5271 without restraints) Performing minimization step: 2756. Total energy = 5274 kcal/mol (5269 without restraints) Performing minimization step: 2757. Total energy = 5272 kcal/mol (5268 without restraints) Performing minimization step: 2758. Total energy = 5271 kcal/mol (5266 without restraints) Performing minimization step: 2759. Total energy = 5269 kcal/mol (5264 without restraints) Performing minimization step: 2760. Total energy = 5267 kcal/mol (5262 without restraints) Performing minimization step: 2761. Total energy = 5265 kcal/mol (5260 without restraints) Performing minimization step: 2762. Total energy = 5263 kcal/mol (5258 without restraints) Performing minimization step: 2763. Total energy = 5261 kcal/mol (5257 without restraints) Performing minimization step: 2764. Total energy = 5259 kcal/mol (5255 without restraints) Performing minimization step: 2765. Total energy = 5258 kcal/mol (5253 without restraints) Performing minimization step: 2766. Total energy = 5256 kcal/mol (5251 without restraints) Performing minimization step: 2767. Total energy = 5254 kcal/mol (5249 without restraints) Performing minimization step: 2768. Total energy = 5252 kcal/mol (5247 without restraints) Performing minimization step: 2769. Total energy = 5250 kcal/mol (5245 without restraints) Performing minimization step: 2770. Total energy = 5248 kcal/mol (5244 without restraints) Performing minimization step: 2771. Total energy = 5246 kcal/mol (5242 without restraints) Performing minimization step: 2772. Total energy = 5245 kcal/mol (5240 without restraints) Performing minimization step: 2773. Total energy = 5243 kcal/mol (5238 without restraints) Performing minimization step: 2774. Total energy = 5241 kcal/mol (5236 without restraints) Performing minimization step: 2775. Total energy = 5239 kcal/mol (5234 without restraints) Performing minimization step: 2776. Total energy = 5237 kcal/mol (5233 without restraints) Performing minimization step: 2777. Total energy = 5235 kcal/mol (5231 without restraints) Performing minimization step: 2778. Total energy = 5234 kcal/mol (5229 without restraints) Performing minimization step: 2779. Total energy = 5232 kcal/mol (5227 without restraints) Performing minimization step: 2780. Total energy = 5230 kcal/mol (5225 without restraints) Performing minimization step: 2781. Total energy = 5228 kcal/mol (5223 without restraints) Performing minimization step: 2782. Total energy = 5226 kcal/mol (5222 without restraints) Performing minimization step: 2783. Total energy = 5224 kcal/mol (5220 without restraints) Performing minimization step: 2784. Total energy = 5223 kcal/mol (5218 without restraints) Performing minimization step: 2785. Total energy = 5221 kcal/mol (5216 without restraints) Performing minimization step: 2786. Total energy = 5219 kcal/mol (5214 without restraints) Performing minimization step: 2787. Total energy = 5217 kcal/mol (5212 without restraints) Performing minimization step: 2788. Total energy = 5215 kcal/mol (5211 without restraints) Performing minimization step: 2789. Total energy = 5213 kcal/mol (5209 without restraints) Performing minimization step: 2790. Total energy = 5212 kcal/mol (5207 without restraints) Performing minimization step: 2791. Total energy = 5210 kcal/mol (5205 without restraints) Performing minimization step: 2792. Total energy = 5208 kcal/mol (5203 without restraints) Performing minimization step: 2793. Total energy = 5206 kcal/mol (5202 without restraints) Performing minimization step: 2794. Total energy = 5204 kcal/mol (5200 without restraints) Performing minimization step: 2795. Total energy = 5203 kcal/mol (5198 without restraints) Performing minimization step: 2796. Total energy = 5201 kcal/mol (5196 without restraints) Performing minimization step: 2797. Total energy = 5199 kcal/mol (5194 without restraints) Performing minimization step: 2798. Total energy = 5197 kcal/mol (5192 without restraints) Performing minimization step: 2799. Total energy = 5195 kcal/mol (5191 without restraints) Performing minimization step: 2800. Total energy = 5194 kcal/mol (5189 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 5192 kcal/mol (5187 without restraints) Performing minimization step: 2802. Total energy = 5190 kcal/mol (5185 without restraints) Performing minimization step: 2803. Total energy = 5188 kcal/mol (5183 without restraints) Performing minimization step: 2804. Total energy = 5186 kcal/mol (5182 without restraints) Performing minimization step: 2805. Total energy = 5184 kcal/mol (5180 without restraints) Performing minimization step: 2806. Total energy = 5183 kcal/mol (5178 without restraints) Performing minimization step: 2807. Total energy = 5181 kcal/mol (5176 without restraints) Performing minimization step: 2808. Total energy = 5179 kcal/mol (5174 without restraints) Performing minimization step: 2809. Total energy = 5177 kcal/mol (5173 without restraints) Performing minimization step: 2810. Total energy = 5175 kcal/mol (5171 without restraints) Performing minimization step: 2811. Total energy = 5174 kcal/mol (5169 without restraints) Performing minimization step: 2812. Total energy = 5172 kcal/mol (5167 without restraints) Performing minimization step: 2813. Total energy = 5170 kcal/mol (5165 without restraints) Performing minimization step: 2814. Total energy = 5168 kcal/mol (5164 without restraints) Performing minimization step: 2815. Total energy = 5166 kcal/mol (5162 without restraints) Performing minimization step: 2816. Total energy = 5165 kcal/mol (5160 without restraints) Performing minimization step: 2817. Total energy = 5163 kcal/mol (5158 without restraints) Performing minimization step: 2818. Total energy = 5161 kcal/mol (5156 without restraints) Performing minimization step: 2819. Total energy = 5159 kcal/mol (5155 without restraints) Performing minimization step: 2820. Total energy = 5158 kcal/mol (5153 without restraints) Performing minimization step: 2821. Total energy = 5156 kcal/mol (5151 without restraints) Performing minimization step: 2822. Total energy = 5154 kcal/mol (5149 without restraints) Performing minimization step: 2823. Total energy = 5152 kcal/mol (5148 without restraints) Performing minimization step: 2824. Total energy = 5150 kcal/mol (5146 without restraints) Performing minimization step: 2825. Total energy = 5149 kcal/mol (5144 without restraints) Performing minimization step: 2826. Total energy = 5147 kcal/mol (5142 without restraints) Performing minimization step: 2827. Total energy = 5145 kcal/mol (5140 without restraints) Performing minimization step: 2828. Total energy = 5143 kcal/mol (5139 without restraints) Performing minimization step: 2829. Total energy = 5142 kcal/mol (5137 without restraints) Performing minimization step: 2830. Total energy = 5140 kcal/mol (5135 without restraints) Performing minimization step: 2831. Total energy = 5138 kcal/mol (5133 without restraints) Performing minimization step: 2832. Total energy = 5136 kcal/mol (5132 without restraints) Performing minimization step: 2833. Total energy = 5134 kcal/mol (5130 without restraints) Performing minimization step: 2834. Total energy = 5133 kcal/mol (5128 without restraints) Performing minimization step: 2835. Total energy = 5131 kcal/mol (5126 without restraints) Performing minimization step: 2836. Total energy = 5129 kcal/mol (5124 without restraints) Performing minimization step: 2837. Total energy = 5127 kcal/mol (5123 without restraints) Performing minimization step: 2838. Total energy = 5126 kcal/mol (5121 without restraints) Performing minimization step: 2839. Total energy = 5124 kcal/mol (5119 without restraints) Performing minimization step: 2840. Total energy = 5122 kcal/mol (5117 without restraints) Performing minimization step: 2841. Total energy = 5120 kcal/mol (5116 without restraints) Performing minimization step: 2842. Total energy = 5119 kcal/mol (5114 without restraints) Performing minimization step: 2843. Total energy = 5117 kcal/mol (5112 without restraints) Performing minimization step: 2844. Total energy = 5115 kcal/mol (5110 without restraints) Performing minimization step: 2845. Total energy = 5113 kcal/mol (5109 without restraints) Performing minimization step: 2846. Total energy = 5111 kcal/mol (5107 without restraints) Performing minimization step: 2847. Total energy = 5110 kcal/mol (5105 without restraints) Performing minimization step: 2848. Total energy = 5108 kcal/mol (5103 without restraints) Performing minimization step: 2849. Total energy = 5106 kcal/mol (5102 without restraints) Performing minimization step: 2850. Total energy = 5104 kcal/mol (5100 without restraints) Performing minimization step: 2851. Total energy = 5103 kcal/mol (5098 without restraints) Performing minimization step: 2852. Total energy = 5101 kcal/mol (5096 without restraints) Performing minimization step: 2853. Total energy = 5099 kcal/mol (5095 without restraints) Performing minimization step: 2854. Total energy = 5097 kcal/mol (5093 without restraints) Performing minimization step: 2855. Total energy = 5096 kcal/mol (5091 without restraints) Performing minimization step: 2856. Total energy = 5094 kcal/mol (5089 without restraints) Performing minimization step: 2857. Total energy = 5092 kcal/mol (5088 without restraints) Performing minimization step: 2858. Total energy = 5090 kcal/mol (5086 without restraints) Performing minimization step: 2859. Total energy = 5089 kcal/mol (5084 without restraints) Performing minimization step: 2860. Total energy = 5087 kcal/mol (5082 without restraints) Performing minimization step: 2861. Total energy = 5085 kcal/mol (5081 without restraints) Performing minimization step: 2862. Total energy = 5083 kcal/mol (5079 without restraints) Performing minimization step: 2863. Total energy = 5082 kcal/mol (5077 without restraints) Performing minimization step: 2864. Total energy = 5080 kcal/mol (5075 without restraints) Performing minimization step: 2865. Total energy = 5078 kcal/mol (5074 without restraints) Performing minimization step: 2866. Total energy = 5077 kcal/mol (5072 without restraints) Performing minimization step: 2867. Total energy = 5075 kcal/mol (5070 without restraints) Performing minimization step: 2868. Total energy = 5073 kcal/mol (5068 without restraints) Performing minimization step: 2869. Total energy = 5071 kcal/mol (5067 without restraints) Performing minimization step: 2870. Total energy = 5070 kcal/mol (5065 without restraints) Performing minimization step: 2871. Total energy = 5068 kcal/mol (5063 without restraints) Performing minimization step: 2872. Total energy = 5066 kcal/mol (5062 without restraints) Performing minimization step: 2873. Total energy = 5064 kcal/mol (5060 without restraints) Performing minimization step: 2874. Total energy = 5063 kcal/mol (5058 without restraints) Performing minimization step: 2875. Total energy = 5061 kcal/mol (5056 without restraints) Performing minimization step: 2876. Total energy = 5059 kcal/mol (5055 without restraints) Performing minimization step: 2877. Total energy = 5057 kcal/mol (5053 without restraints) Performing minimization step: 2878. Total energy = 5056 kcal/mol (5051 without restraints) Performing minimization step: 2879. Total energy = 5054 kcal/mol (5049 without restraints) Performing minimization step: 2880. Total energy = 5052 kcal/mol (5048 without restraints) Performing minimization step: 2881. Total energy = 5051 kcal/mol (5046 without restraints) Performing minimization step: 2882. Total energy = 5049 kcal/mol (5044 without restraints) Performing minimization step: 2883. Total energy = 5047 kcal/mol (5043 without restraints) Performing minimization step: 2884. Total energy = 5045 kcal/mol (5041 without restraints) Performing minimization step: 2885. Total energy = 5044 kcal/mol (5039 without restraints) Performing minimization step: 2886. Total energy = 5042 kcal/mol (5037 without restraints) Performing minimization step: 2887. Total energy = 5040 kcal/mol (5036 without restraints) Performing minimization step: 2888. Total energy = 5039 kcal/mol (5034 without restraints) Performing minimization step: 2889. Total energy = 5037 kcal/mol (5032 without restraints) Performing minimization step: 2890. Total energy = 5035 kcal/mol (5031 without restraints) Performing minimization step: 2891. Total energy = 5033 kcal/mol (5029 without restraints) Performing minimization step: 2892. Total energy = 5032 kcal/mol (5027 without restraints) Performing minimization step: 2893. Total energy = 5030 kcal/mol (5026 without restraints) Performing minimization step: 2894. Total energy = 5028 kcal/mol (5024 without restraints) Performing minimization step: 2895. Total energy = 5027 kcal/mol (5022 without restraints) Performing minimization step: 2896. Total energy = 5025 kcal/mol (5020 without restraints) Performing minimization step: 2897. Total energy = 5023 kcal/mol (5019 without restraints) Performing minimization step: 2898. Total energy = 5022 kcal/mol (5017 without restraints) Performing minimization step: 2899. Total energy = 5020 kcal/mol (5015 without restraints) Performing minimization step: 2900. Total energy = 5018 kcal/mol (5014 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 5016 kcal/mol (5012 without restraints) Performing minimization step: 2902. Total energy = 5015 kcal/mol (5010 without restraints) Performing minimization step: 2903. Total energy = 5013 kcal/mol (5009 without restraints) Performing minimization step: 2904. Total energy = 5011 kcal/mol (5007 without restraints) Performing minimization step: 2905. Total energy = 5010 kcal/mol (5005 without restraints) Performing minimization step: 2906. Total energy = 5008 kcal/mol (5003 without restraints) Performing minimization step: 2907. Total energy = 5006 kcal/mol (5002 without restraints) Performing minimization step: 2908. Total energy = 5005 kcal/mol (5000 without restraints) Performing minimization step: 2909. Total energy = 5003 kcal/mol (4998 without restraints) Performing minimization step: 2910. Total energy = 5001 kcal/mol (4997 without restraints) Performing minimization step: 2911. Total energy = 4999 kcal/mol (4995 without restraints) Performing minimization step: 2912. Total energy = 4998 kcal/mol (4993 without restraints) Performing minimization step: 2913. Total energy = 4996 kcal/mol (4992 without restraints) Performing minimization step: 2914. Total energy = 4994 kcal/mol (4990 without restraints) Performing minimization step: 2915. Total energy = 4993 kcal/mol (4988 without restraints) Performing minimization step: 2916. Total energy = 4991 kcal/mol (4987 without restraints) Performing minimization step: 2917. Total energy = 4989 kcal/mol (4985 without restraints) Performing minimization step: 2918. Total energy = 4988 kcal/mol (4983 without restraints) Performing minimization step: 2919. Total energy = 4986 kcal/mol (4982 without restraints) Performing minimization step: 2920. Total energy = 4984 kcal/mol (4980 without restraints) Performing minimization step: 2921. Total energy = 4983 kcal/mol (4978 without restraints) Performing minimization step: 2922. Total energy = 4981 kcal/mol (4976 without restraints) Performing minimization step: 2923. Total energy = 4979 kcal/mol (4975 without restraints) Performing minimization step: 2924. Total energy = 4978 kcal/mol (4973 without restraints) Performing minimization step: 2925. Total energy = 4976 kcal/mol (4971 without restraints) Performing minimization step: 2926. Total energy = 4974 kcal/mol (4970 without restraints) Performing minimization step: 2927. Total energy = 4973 kcal/mol (4968 without restraints) Performing minimization step: 2928. Total energy = 4971 kcal/mol (4966 without restraints) Performing minimization step: 2929. Total energy = 4969 kcal/mol (4965 without restraints) Performing minimization step: 2930. Total energy = 4968 kcal/mol (4963 without restraints) Performing minimization step: 2931. Total energy = 4966 kcal/mol (4961 without restraints) Performing minimization step: 2932. Total energy = 4964 kcal/mol (4960 without restraints) Performing minimization step: 2933. Total energy = 4963 kcal/mol (4958 without restraints) Performing minimization step: 2934. Total energy = 4961 kcal/mol (4956 without restraints) Performing minimization step: 2935. Total energy = 4959 kcal/mol (4955 without restraints) Performing minimization step: 2936. Total energy = 4958 kcal/mol (4953 without restraints) Performing minimization step: 2937. Total energy = 4956 kcal/mol (4951 without restraints) Performing minimization step: 2938. Total energy = 4954 kcal/mol (4950 without restraints) Performing minimization step: 2939. Total energy = 4953 kcal/mol (4948 without restraints) Performing minimization step: 2940. Total energy = 4951 kcal/mol (4947 without restraints) Performing minimization step: 2941. Total energy = 4949 kcal/mol (4945 without restraints) Performing minimization step: 2942. Total energy = 4948 kcal/mol (4943 without restraints) Performing minimization step: 2943. Total energy = 4946 kcal/mol (4942 without restraints) Performing minimization step: 2944. Total energy = 4944 kcal/mol (4940 without restraints) Performing minimization step: 2945. Total energy = 4943 kcal/mol (4938 without restraints) Performing minimization step: 2946. Total energy = 4941 kcal/mol (4937 without restraints) Performing minimization step: 2947. Total energy = 4939 kcal/mol (4935 without restraints) Performing minimization step: 2948. Total energy = 4938 kcal/mol (4933 without restraints) Performing minimization step: 2949. Total energy = 4936 kcal/mol (4932 without restraints) Performing minimization step: 2950. Total energy = 4934 kcal/mol (4930 without restraints) Performing minimization step: 2951. Total energy = 4933 kcal/mol (4928 without restraints) Performing minimization step: 2952. Total energy = 4931 kcal/mol (4927 without restraints) Performing minimization step: 2953. Total energy = 4930 kcal/mol (4925 without restraints) Performing minimization step: 2954. Total energy = 4928 kcal/mol (4923 without restraints) Performing minimization step: 2955. Total energy = 4926 kcal/mol (4922 without restraints) Performing minimization step: 2956. Total energy = 4925 kcal/mol (4920 without restraints) Performing minimization step: 2957. Total energy = 4923 kcal/mol (4919 without restraints) Performing minimization step: 2958. Total energy = 4921 kcal/mol (4917 without restraints) Performing minimization step: 2959. Total energy = 4920 kcal/mol (4915 without restraints) Performing minimization step: 2960. Total energy = 4918 kcal/mol (4914 without restraints) Performing minimization step: 2961. Total energy = 4916 kcal/mol (4912 without restraints) Performing minimization step: 2962. Total energy = 4915 kcal/mol (4910 without restraints) Performing minimization step: 2963. Total energy = 4913 kcal/mol (4909 without restraints) Performing minimization step: 2964. Total energy = 4911 kcal/mol (4907 without restraints) Performing minimization step: 2965. Total energy = 4910 kcal/mol (4905 without restraints) Performing minimization step: 2966. Total energy = 4908 kcal/mol (4904 without restraints) Performing minimization step: 2967. Total energy = 4907 kcal/mol (4902 without restraints) Performing minimization step: 2968. Total energy = 4905 kcal/mol (4901 without restraints) Performing minimization step: 2969. Total energy = 4903 kcal/mol (4899 without restraints) Performing minimization step: 2970. Total energy = 4902 kcal/mol (4897 without restraints) Performing minimization step: 2971. Total energy = 4900 kcal/mol (4896 without restraints) Performing minimization step: 2972. Total energy = 4898 kcal/mol (4894 without restraints) Performing minimization step: 2973. Total energy = 4897 kcal/mol (4892 without restraints) Performing minimization step: 2974. Total energy = 4895 kcal/mol (4891 without restraints) Performing minimization step: 2975. Total energy = 4894 kcal/mol (4889 without restraints) Performing minimization step: 2976. Total energy = 4892 kcal/mol (4888 without restraints) Performing minimization step: 2977. Total energy = 4890 kcal/mol (4886 without restraints) Performing minimization step: 2978. Total energy = 4889 kcal/mol (4884 without restraints) Performing minimization step: 2979. Total energy = 4887 kcal/mol (4883 without restraints) Performing minimization step: 2980. Total energy = 4886 kcal/mol (4881 without restraints) Performing minimization step: 2981. Total energy = 4884 kcal/mol (4879 without restraints) Performing minimization step: 2982. Total energy = 4882 kcal/mol (4878 without restraints) Performing minimization step: 2983. Total energy = 4881 kcal/mol (4876 without restraints) Performing minimization step: 2984. Total energy = 4879 kcal/mol (4875 without restraints) Performing minimization step: 2985. Total energy = 4877 kcal/mol (4873 without restraints) Performing minimization step: 2986. Total energy = 4876 kcal/mol (4871 without restraints) Performing minimization step: 2987. Total energy = 4874 kcal/mol (4870 without restraints) Performing minimization step: 2988. Total energy = 4873 kcal/mol (4868 without restraints) Performing minimization step: 2989. Total energy = 4871 kcal/mol (4867 without restraints) Performing minimization step: 2990. Total energy = 4869 kcal/mol (4865 without restraints) Performing minimization step: 2991. Total energy = 4868 kcal/mol (4863 without restraints) Performing minimization step: 2992. Total energy = 4866 kcal/mol (4862 without restraints) Performing minimization step: 2993. Total energy = 4865 kcal/mol (4860 without restraints) Performing minimization step: 2994. Total energy = 4863 kcal/mol (4859 without restraints) Performing minimization step: 2995. Total energy = 4861 kcal/mol (4857 without restraints) Performing minimization step: 2996. Total energy = 4860 kcal/mol (4855 without restraints) Performing minimization step: 2997. Total energy = 4858 kcal/mol (4854 without restraints) Performing minimization step: 2998. Total energy = 4857 kcal/mol (4852 without restraints) Performing minimization step: 2999. Total energy = 4855 kcal/mol (4851 without restraints) Performing minimization step: 3000. Total energy = 4853 kcal/mol (4849 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 4852 kcal/mol (4847 without restraints) Performing minimization step: 3002. Total energy = 4850 kcal/mol (4846 without restraints) Performing minimization step: 3003. Total energy = 4849 kcal/mol (4844 without restraints) Performing minimization step: 3004. Total energy = 4847 kcal/mol (4843 without restraints) Performing minimization step: 3005. Total energy = 4845 kcal/mol (4841 without restraints) Performing minimization step: 3006. Total energy = 4844 kcal/mol (4839 without restraints) Performing minimization step: 3007. Total energy = 4842 kcal/mol (4838 without restraints) Performing minimization step: 3008. Total energy = 4841 kcal/mol (4836 without restraints) Performing minimization step: 3009. Total energy = 4839 kcal/mol (4835 without restraints) Performing minimization step: 3010. Total energy = 4837 kcal/mol (4833 without restraints) Performing minimization step: 3011. Total energy = 4836 kcal/mol (4832 without restraints) Performing minimization step: 3012. Total energy = 4834 kcal/mol (4830 without restraints) Performing minimization step: 3013. Total energy = 4833 kcal/mol (4828 without restraints) Performing minimization step: 3014. Total energy = 4831 kcal/mol (4827 without restraints) Performing minimization step: 3015. Total energy = 4830 kcal/mol (4825 without restraints) Performing minimization step: 3016. Total energy = 4828 kcal/mol (4824 without restraints) Performing minimization step: 3017. Total energy = 4826 kcal/mol (4822 without restraints) Performing minimization step: 3018. Total energy = 4825 kcal/mol (4820 without restraints) Performing minimization step: 3019. Total energy = 4823 kcal/mol (4819 without restraints) Performing minimization step: 3020. Total energy = 4822 kcal/mol (4817 without restraints) Performing minimization step: 3021. Total energy = 4820 kcal/mol (4816 without restraints) Performing minimization step: 3022. Total energy = 4818 kcal/mol (4814 without restraints) Performing minimization step: 3023. Total energy = 4817 kcal/mol (4813 without restraints) Performing minimization step: 3024. Total energy = 4815 kcal/mol (4811 without restraints) Performing minimization step: 3025. Total energy = 4814 kcal/mol (4809 without restraints) Performing minimization step: 3026. Total energy = 4812 kcal/mol (4808 without restraints) Performing minimization step: 3027. Total energy = 4811 kcal/mol (4806 without restraints) Performing minimization step: 3028. Total energy = 4809 kcal/mol (4805 without restraints) Performing minimization step: 3029. Total energy = 4807 kcal/mol (4803 without restraints) Performing minimization step: 3030. Total energy = 4806 kcal/mol (4802 without restraints) Performing minimization step: 3031. Total energy = 4804 kcal/mol (4800 without restraints) Performing minimization step: 3032. Total energy = 4803 kcal/mol (4798 without restraints) Performing minimization step: 3033. Total energy = 4801 kcal/mol (4797 without restraints) Performing minimization step: 3034. Total energy = 4800 kcal/mol (4795 without restraints) Performing minimization step: 3035. Total energy = 4798 kcal/mol (4794 without restraints) Performing minimization step: 3036. Total energy = 4797 kcal/mol (4792 without restraints) Performing minimization step: 3037. Total energy = 4795 kcal/mol (4791 without restraints) Performing minimization step: 3038. Total energy = 4793 kcal/mol (4789 without restraints) Performing minimization step: 3039. Total energy = 4792 kcal/mol (4788 without restraints) Performing minimization step: 3040. Total energy = 4790 kcal/mol (4786 without restraints) Performing minimization step: 3041. Total energy = 4789 kcal/mol (4784 without restraints) Performing minimization step: 3042. Total energy = 4787 kcal/mol (4783 without restraints) Performing minimization step: 3043. Total energy = 4786 kcal/mol (4781 without restraints) Performing minimization step: 3044. Total energy = 4784 kcal/mol (4780 without restraints) Performing minimization step: 3045. Total energy = 4783 kcal/mol (4778 without restraints) Performing minimization step: 3046. Total energy = 4781 kcal/mol (4777 without restraints) Performing minimization step: 3047. Total energy = 4779 kcal/mol (4775 without restraints) Performing minimization step: 3048. Total energy = 4778 kcal/mol (4774 without restraints) Performing minimization step: 3049. Total energy = 4776 kcal/mol (4772 without restraints) Performing minimization step: 3050. Total energy = 4775 kcal/mol (4770 without restraints) Performing minimization step: 3051. Total energy = 4773 kcal/mol (4769 without restraints) Performing minimization step: 3052. Total energy = 4772 kcal/mol (4767 without restraints) Performing minimization step: 3053. Total energy = 4770 kcal/mol (4766 without restraints) Performing minimization step: 3054. Total energy = 4769 kcal/mol (4764 without restraints) Performing minimization step: 3055. Total energy = 4767 kcal/mol (4763 without restraints) Performing minimization step: 3056. Total energy = 4766 kcal/mol (4761 without restraints) Performing minimization step: 3057. Total energy = 4764 kcal/mol (4760 without restraints) Performing minimization step: 3058. Total energy = 4762 kcal/mol (4758 without restraints) Performing minimization step: 3059. Total energy = 4761 kcal/mol (4757 without restraints) Performing minimization step: 3060. Total energy = 4759 kcal/mol (4755 without restraints) Performing minimization step: 3061. Total energy = 4758 kcal/mol (4754 without restraints) Performing minimization step: 3062. Total energy = 4756 kcal/mol (4752 without restraints) Performing minimization step: 3063. Total energy = 4755 kcal/mol (4750 without restraints) Performing minimization step: 3064. Total energy = 4753 kcal/mol (4749 without restraints) Performing minimization step: 3065. Total energy = 4752 kcal/mol (4747 without restraints) Performing minimization step: 3066. Total energy = 4750 kcal/mol (4746 without restraints) Performing minimization step: 3067. Total energy = 4749 kcal/mol (4744 without restraints) Performing minimization step: 3068. Total energy = 4747 kcal/mol (4743 without restraints) Performing minimization step: 3069. Total energy = 4746 kcal/mol (4741 without restraints) Performing minimization step: 3070. Total energy = 4744 kcal/mol (4740 without restraints) Performing minimization step: 3071. Total energy = 4743 kcal/mol (4738 without restraints) Performing minimization step: 3072. Total energy = 4741 kcal/mol (4737 without restraints) Performing minimization step: 3073. Total energy = 4739 kcal/mol (4735 without restraints) Performing minimization step: 3074. Total energy = 4738 kcal/mol (4734 without restraints) Performing minimization step: 3075. Total energy = 4736 kcal/mol (4732 without restraints) Performing minimization step: 3076. Total energy = 4735 kcal/mol (4731 without restraints) Performing minimization step: 3077. Total energy = 4733 kcal/mol (4729 without restraints) Performing minimization step: 3078. Total energy = 4732 kcal/mol (4728 without restraints) Performing minimization step: 3079. Total energy = 4730 kcal/mol (4726 without restraints) Performing minimization step: 3080. Total energy = 4729 kcal/mol (4725 without restraints) Performing minimization step: 3081. Total energy = 4727 kcal/mol (4723 without restraints) Performing minimization step: 3082. Total energy = 4726 kcal/mol (4722 without restraints) Performing minimization step: 3083. Total energy = 4724 kcal/mol (4720 without restraints) Performing minimization step: 3084. Total energy = 4723 kcal/mol (4718 without restraints) Performing minimization step: 3085. Total energy = 4721 kcal/mol (4717 without restraints) Performing minimization step: 3086. Total energy = 4720 kcal/mol (4715 without restraints) Performing minimization step: 3087. Total energy = 4718 kcal/mol (4714 without restraints) Performing minimization step: 3088. Total energy = 4717 kcal/mol (4712 without restraints) Performing minimization step: 3089. Total energy = 4715 kcal/mol (4711 without restraints) Performing minimization step: 3090. Total energy = 4714 kcal/mol (4709 without restraints) Performing minimization step: 3091. Total energy = 4712 kcal/mol (4708 without restraints) Performing minimization step: 3092. Total energy = 4711 kcal/mol (4706 without restraints) Performing minimization step: 3093. Total energy = 4709 kcal/mol (4705 without restraints) Performing minimization step: 3094. Total energy = 4708 kcal/mol (4703 without restraints) Performing minimization step: 3095. Total energy = 4706 kcal/mol (4702 without restraints) Performing minimization step: 3096. Total energy = 4705 kcal/mol (4700 without restraints) Performing minimization step: 3097. Total energy = 4703 kcal/mol (4699 without restraints) Performing minimization step: 3098. Total energy = 4702 kcal/mol (4697 without restraints) Performing minimization step: 3099. Total energy = 4700 kcal/mol (4696 without restraints) Performing minimization step: 3100. Total energy = 4699 kcal/mol (4694 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 4697 kcal/mol (4693 without restraints) Performing minimization step: 3102. Total energy = 4696 kcal/mol (4691 without restraints) Performing minimization step: 3103. Total energy = 4694 kcal/mol (4690 without restraints) Performing minimization step: 3104. Total energy = 4693 kcal/mol (4688 without restraints) Performing minimization step: 3105. Total energy = 4691 kcal/mol (4687 without restraints) Performing minimization step: 3106. Total energy = 4690 kcal/mol (4685 without restraints) Performing minimization step: 3107. Total energy = 4688 kcal/mol (4684 without restraints) Performing minimization step: 3108. Total energy = 4687 kcal/mol (4682 without restraints) Performing minimization step: 3109. Total energy = 4685 kcal/mol (4681 without restraints) Performing minimization step: 3110. Total energy = 4684 kcal/mol (4679 without restraints) Performing minimization step: 3111. Total energy = 4682 kcal/mol (4678 without restraints) Performing minimization step: 3112. Total energy = 4681 kcal/mol (4676 without restraints) Performing minimization step: 3113. Total energy = 4679 kcal/mol (4675 without restraints) Performing minimization step: 3114. Total energy = 4678 kcal/mol (4674 without restraints) Performing minimization step: 3115. Total energy = 4676 kcal/mol (4672 without restraints) Performing minimization step: 3116. Total energy = 4675 kcal/mol (4671 without restraints) Performing minimization step: 3117. Total energy = 4673 kcal/mol (4669 without restraints) Performing minimization step: 3118. Total energy = 4672 kcal/mol (4668 without restraints) Performing minimization step: 3119. Total energy = 4670 kcal/mol (4666 without restraints) Performing minimization step: 3120. Total energy = 4669 kcal/mol (4665 without restraints) Performing minimization step: 3121. Total energy = 4667 kcal/mol (4663 without restraints) Performing minimization step: 3122. Total energy = 4666 kcal/mol (4662 without restraints) Performing minimization step: 3123. Total energy = 4664 kcal/mol (4660 without restraints) Performing minimization step: 3124. Total energy = 4663 kcal/mol (4659 without restraints) Performing minimization step: 3125. Total energy = 4661 kcal/mol (4657 without restraints) Performing minimization step: 3126. Total energy = 4660 kcal/mol (4656 without restraints) Performing minimization step: 3127. Total energy = 4658 kcal/mol (4654 without restraints) Performing minimization step: 3128. Total energy = 4657 kcal/mol (4653 without restraints) Performing minimization step: 3129. Total energy = 4656 kcal/mol (4651 without restraints) Performing minimization step: 3130. Total energy = 4654 kcal/mol (4650 without restraints) Performing minimization step: 3131. Total energy = 4653 kcal/mol (4648 without restraints) Performing minimization step: 3132. Total energy = 4651 kcal/mol (4647 without restraints) Performing minimization step: 3133. Total energy = 4650 kcal/mol (4645 without restraints) Performing minimization step: 3134. Total energy = 4648 kcal/mol (4644 without restraints) Performing minimization step: 3135. Total energy = 4647 kcal/mol (4643 without restraints) Performing minimization step: 3136. Total energy = 4645 kcal/mol (4641 without restraints) Performing minimization step: 3137. Total energy = 4644 kcal/mol (4640 without restraints) Performing minimization step: 3138. Total energy = 4642 kcal/mol (4638 without restraints) Performing minimization step: 3139. Total energy = 4641 kcal/mol (4637 without restraints) Performing minimization step: 3140. Total energy = 4639 kcal/mol (4635 without restraints) Performing minimization step: 3141. Total energy = 4638 kcal/mol (4634 without restraints) Performing minimization step: 3142. Total energy = 4636 kcal/mol (4632 without restraints) Performing minimization step: 3143. Total energy = 4635 kcal/mol (4631 without restraints) Performing minimization step: 3144. Total energy = 4634 kcal/mol (4629 without restraints) Performing minimization step: 3145. Total energy = 4632 kcal/mol (4628 without restraints) Performing minimization step: 3146. Total energy = 4631 kcal/mol (4626 without restraints) Performing minimization step: 3147. Total energy = 4629 kcal/mol (4625 without restraints) Performing minimization step: 3148. Total energy = 4628 kcal/mol (4624 without restraints) Performing minimization step: 3149. Total energy = 4626 kcal/mol (4622 without restraints) Performing minimization step: 3150. Total energy = 4625 kcal/mol (4621 without restraints) Performing minimization step: 3151. Total energy = 4623 kcal/mol (4619 without restraints) Performing minimization step: 3152. Total energy = 4622 kcal/mol (4618 without restraints) Performing minimization step: 3153. Total energy = 4620 kcal/mol (4616 without restraints) Performing minimization step: 3154. Total energy = 4619 kcal/mol (4615 without restraints) Performing minimization step: 3155. Total energy = 4618 kcal/mol (4613 without restraints) Performing minimization step: 3156. Total energy = 4616 kcal/mol (4612 without restraints) Performing minimization step: 3157. Total energy = 4615 kcal/mol (4611 without restraints) Performing minimization step: 3158. Total energy = 4613 kcal/mol (4609 without restraints) Performing minimization step: 3159. Total energy = 4612 kcal/mol (4608 without restraints) Performing minimization step: 3160. Total energy = 4610 kcal/mol (4606 without restraints) Performing minimization step: 3161. Total energy = 4609 kcal/mol (4605 without restraints) Performing minimization step: 3162. Total energy = 4607 kcal/mol (4603 without restraints) Performing minimization step: 3163. Total energy = 4606 kcal/mol (4602 without restraints) Performing minimization step: 3164. Total energy = 4605 kcal/mol (4600 without restraints) Performing minimization step: 3165. Total energy = 4603 kcal/mol (4599 without restraints) Performing minimization step: 3166. Total energy = 4602 kcal/mol (4598 without restraints) Performing minimization step: 3167. Total energy = 4600 kcal/mol (4596 without restraints) Performing minimization step: 3168. Total energy = 4599 kcal/mol (4595 without restraints) Performing minimization step: 3169. Total energy = 4597 kcal/mol (4593 without restraints) Performing minimization step: 3170. Total energy = 4596 kcal/mol (4592 without restraints) Performing minimization step: 3171. Total energy = 4595 kcal/mol (4590 without restraints) Performing minimization step: 3172. Total energy = 4593 kcal/mol (4589 without restraints) Performing minimization step: 3173. Total energy = 4592 kcal/mol (4588 without restraints) Performing minimization step: 3174. Total energy = 4590 kcal/mol (4586 without restraints) Performing minimization step: 3175. Total energy = 4589 kcal/mol (4585 without restraints) Performing minimization step: 3176. Total energy = 4587 kcal/mol (4583 without restraints) Performing minimization step: 3177. Total energy = 4586 kcal/mol (4582 without restraints) Performing minimization step: 3178. Total energy = 4584 kcal/mol (4580 without restraints) Performing minimization step: 3179. Total energy = 4583 kcal/mol (4579 without restraints) Performing minimization step: 3180. Total energy = 4582 kcal/mol (4578 without restraints) Performing minimization step: 3181. Total energy = 4580 kcal/mol (4576 without restraints) Performing minimization step: 3182. Total energy = 4579 kcal/mol (4575 without restraints) Performing minimization step: 3183. Total energy = 4577 kcal/mol (4573 without restraints) Performing minimization step: 3184. Total energy = 4576 kcal/mol (4572 without restraints) Performing minimization step: 3185. Total energy = 4575 kcal/mol (4570 without restraints) Performing minimization step: 3186. Total energy = 4573 kcal/mol (4569 without restraints) Performing minimization step: 3187. Total energy = 4572 kcal/mol (4568 without restraints) Performing minimization step: 3188. Total energy = 4570 kcal/mol (4566 without restraints) Performing minimization step: 3189. Total energy = 4569 kcal/mol (4565 without restraints) Performing minimization step: 3190. Total energy = 4567 kcal/mol (4563 without restraints) Performing minimization step: 3191. Total energy = 4566 kcal/mol (4562 without restraints) Performing minimization step: 3192. Total energy = 4565 kcal/mol (4560 without restraints) Performing minimization step: 3193. Total energy = 4563 kcal/mol (4559 without restraints) Performing minimization step: 3194. Total energy = 4562 kcal/mol (4558 without restraints) Performing minimization step: 3195. Total energy = 4560 kcal/mol (4556 without restraints) Performing minimization step: 3196. Total energy = 4559 kcal/mol (4555 without restraints) Performing minimization step: 3197. Total energy = 4558 kcal/mol (4553 without restraints) Performing minimization step: 3198. Total energy = 4556 kcal/mol (4552 without restraints) Performing minimization step: 3199. Total energy = 4555 kcal/mol (4551 without restraints) Performing minimization step: 3200. Total energy = 4553 kcal/mol (4549 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 4552 kcal/mol (4548 without restraints) Performing minimization step: 3202. Total energy = 4550 kcal/mol (4546 without restraints) Performing minimization step: 3203. Total energy = 4549 kcal/mol (4545 without restraints) Performing minimization step: 3204. Total energy = 4548 kcal/mol (4544 without restraints) Performing minimization step: 3205. Total energy = 4546 kcal/mol (4542 without restraints) Performing minimization step: 3206. Total energy = 4545 kcal/mol (4541 without restraints) Performing minimization step: 3207. Total energy = 4543 kcal/mol (4539 without restraints) Performing minimization step: 3208. Total energy = 4542 kcal/mol (4538 without restraints) Performing minimization step: 3209. Total energy = 4541 kcal/mol (4537 without restraints) Performing minimization step: 3210. Total energy = 4539 kcal/mol (4535 without restraints) Performing minimization step: 3211. Total energy = 4538 kcal/mol (4534 without restraints) Performing minimization step: 3212. Total energy = 4536 kcal/mol (4532 without restraints) Performing minimization step: 3213. Total energy = 4535 kcal/mol (4531 without restraints) Performing minimization step: 3214. Total energy = 4534 kcal/mol (4530 without restraints) Performing minimization step: 3215. Total energy = 4532 kcal/mol (4528 without restraints) Performing minimization step: 3216. Total energy = 4531 kcal/mol (4527 without restraints) Performing minimization step: 3217. Total energy = 4529 kcal/mol (4525 without restraints) Performing minimization step: 3218. Total energy = 4528 kcal/mol (4524 without restraints) Performing minimization step: 3219. Total energy = 4527 kcal/mol (4523 without restraints) Performing minimization step: 3220. Total energy = 4525 kcal/mol (4521 without restraints) Performing minimization step: 3221. Total energy = 4524 kcal/mol (4520 without restraints) Performing minimization step: 3222. Total energy = 4523 kcal/mol (4518 without restraints) Performing minimization step: 3223. Total energy = 4521 kcal/mol (4517 without restraints) Performing minimization step: 3224. Total energy = 4520 kcal/mol (4516 without restraints) Performing minimization step: 3225. Total energy = 4518 kcal/mol (4514 without restraints) Performing minimization step: 3226. Total energy = 4517 kcal/mol (4513 without restraints) Performing minimization step: 3227. Total energy = 4516 kcal/mol (4512 without restraints) Performing minimization step: 3228. Total energy = 4514 kcal/mol (4510 without restraints) Performing minimization step: 3229. Total energy = 4513 kcal/mol (4509 without restraints) Performing minimization step: 3230. Total energy = 4511 kcal/mol (4507 without restraints) Performing minimization step: 3231. Total energy = 4510 kcal/mol (4506 without restraints) Performing minimization step: 3232. Total energy = 4509 kcal/mol (4505 without restraints) Performing minimization step: 3233. Total energy = 4507 kcal/mol (4503 without restraints) Performing minimization step: 3234. Total energy = 4506 kcal/mol (4502 without restraints) Performing minimization step: 3235. Total energy = 4505 kcal/mol (4500 without restraints) Performing minimization step: 3236. Total energy = 4503 kcal/mol (4499 without restraints) Performing minimization step: 3237. Total energy = 4502 kcal/mol (4498 without restraints) Performing minimization step: 3238. Total energy = 4500 kcal/mol (4496 without restraints) Performing minimization step: 3239. Total energy = 4499 kcal/mol (4495 without restraints) Performing minimization step: 3240. Total energy = 4498 kcal/mol (4494 without restraints) Performing minimization step: 3241. Total energy = 4496 kcal/mol (4492 without restraints) Performing minimization step: 3242. Total energy = 4495 kcal/mol (4491 without restraints) Performing minimization step: 3243. Total energy = 4494 kcal/mol (4489 without restraints) Performing minimization step: 3244. Total energy = 4492 kcal/mol (4488 without restraints) Performing minimization step: 3245. Total energy = 4491 kcal/mol (4487 without restraints) Performing minimization step: 3246. Total energy = 4489 kcal/mol (4485 without restraints) Performing minimization step: 3247. Total energy = 4488 kcal/mol (4484 without restraints) Performing minimization step: 3248. Total energy = 4487 kcal/mol (4483 without restraints) Performing minimization step: 3249. Total energy = 4485 kcal/mol (4481 without restraints) Performing minimization step: 3250. Total energy = 4484 kcal/mol (4480 without restraints) Performing minimization step: 3251. Total energy = 4483 kcal/mol (4479 without restraints) Performing minimization step: 3252. Total energy = 4481 kcal/mol (4477 without restraints) Performing minimization step: 3253. Total energy = 4480 kcal/mol (4476 without restraints) Performing minimization step: 3254. Total energy = 4479 kcal/mol (4474 without restraints) Performing minimization step: 3255. Total energy = 4477 kcal/mol (4473 without restraints) Performing minimization step: 3256. Total energy = 4476 kcal/mol (4472 without restraints) Performing minimization step: 3257. Total energy = 4474 kcal/mol (4470 without restraints) Performing minimization step: 3258. Total energy = 4473 kcal/mol (4469 without restraints) Performing minimization step: 3259. Total energy = 4472 kcal/mol (4468 without restraints) Performing minimization step: 3260. Total energy = 4470 kcal/mol (4466 without restraints) Performing minimization step: 3261. Total energy = 4469 kcal/mol (4465 without restraints) Performing minimization step: 3262. Total energy = 4468 kcal/mol (4464 without restraints) Performing minimization step: 3263. Total energy = 4466 kcal/mol (4462 without restraints) Performing minimization step: 3264. Total energy = 4465 kcal/mol (4461 without restraints) Performing minimization step: 3265. Total energy = 4464 kcal/mol (4460 without restraints) Performing minimization step: 3266. Total energy = 4462 kcal/mol (4458 without restraints) Performing minimization step: 3267. Total energy = 4461 kcal/mol (4457 without restraints) Performing minimization step: 3268. Total energy = 4460 kcal/mol (4455 without restraints) Performing minimization step: 3269. Total energy = 4458 kcal/mol (4454 without restraints) Performing minimization step: 3270. Total energy = 4457 kcal/mol (4453 without restraints) Performing minimization step: 3271. Total energy = 4455 kcal/mol (4451 without restraints) Performing minimization step: 3272. Total energy = 4454 kcal/mol (4450 without restraints) Performing minimization step: 3273. Total energy = 4453 kcal/mol (4449 without restraints) Performing minimization step: 3274. Total energy = 4451 kcal/mol (4447 without restraints) Performing minimization step: 3275. Total energy = 4450 kcal/mol (4446 without restraints) Performing minimization step: 3276. Total energy = 4449 kcal/mol (4445 without restraints) Performing minimization step: 3277. Total energy = 4447 kcal/mol (4443 without restraints) Performing minimization step: 3278. Total energy = 4446 kcal/mol (4442 without restraints) Performing minimization step: 3279. Total energy = 4445 kcal/mol (4441 without restraints) Performing minimization step: 3280. Total energy = 4443 kcal/mol (4439 without restraints) Performing minimization step: 3281. Total energy = 4442 kcal/mol (4438 without restraints) Performing minimization step: 3282. Total energy = 4441 kcal/mol (4437 without restraints) Performing minimization step: 3283. Total energy = 4439 kcal/mol (4435 without restraints) Performing minimization step: 3284. Total energy = 4438 kcal/mol (4434 without restraints) Performing minimization step: 3285. Total energy = 4437 kcal/mol (4433 without restraints) Performing minimization step: 3286. Total energy = 4435 kcal/mol (4431 without restraints) Performing minimization step: 3287. Total energy = 4434 kcal/mol (4430 without restraints) Performing minimization step: 3288. Total energy = 4433 kcal/mol (4429 without restraints) Performing minimization step: 3289. Total energy = 4431 kcal/mol (4427 without restraints) Performing minimization step: 3290. Total energy = 4430 kcal/mol (4426 without restraints) Performing minimization step: 3291. Total energy = 4429 kcal/mol (4425 without restraints) Performing minimization step: 3292. Total energy = 4427 kcal/mol (4423 without restraints) Performing minimization step: 3293. Total energy = 4426 kcal/mol (4422 without restraints) Performing minimization step: 3294. Total energy = 4425 kcal/mol (4421 without restraints) Performing minimization step: 3295. Total energy = 4423 kcal/mol (4419 without restraints) Performing minimization step: 3296. Total energy = 4422 kcal/mol (4418 without restraints) Performing minimization step: 3297. Total energy = 4421 kcal/mol (4417 without restraints) Performing minimization step: 3298. Total energy = 4419 kcal/mol (4415 without restraints) Performing minimization step: 3299. Total energy = 4418 kcal/mol (4414 without restraints) Performing minimization step: 3300. Total energy = 4417 kcal/mol (4413 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 4415 kcal/mol (4411 without restraints) Performing minimization step: 3302. Total energy = 4414 kcal/mol (4410 without restraints) Performing minimization step: 3303. Total energy = 4413 kcal/mol (4409 without restraints) Performing minimization step: 3304. Total energy = 4411 kcal/mol (4407 without restraints) Performing minimization step: 3305. Total energy = 4410 kcal/mol (4406 without restraints) Performing minimization step: 3306. Total energy = 4409 kcal/mol (4405 without restraints) Performing minimization step: 3307. Total energy = 4408 kcal/mol (4404 without restraints) Performing minimization step: 3308. Total energy = 4406 kcal/mol (4402 without restraints) Performing minimization step: 3309. Total energy = 4405 kcal/mol (4401 without restraints) Performing minimization step: 3310. Total energy = 4404 kcal/mol (4400 without restraints) Performing minimization step: 3311. Total energy = 4402 kcal/mol (4398 without restraints) Performing minimization step: 3312. Total energy = 4401 kcal/mol (4397 without restraints) Performing minimization step: 3313. Total energy = 4400 kcal/mol (4396 without restraints) Performing minimization step: 3314. Total energy = 4398 kcal/mol (4394 without restraints) Performing minimization step: 3315. Total energy = 4397 kcal/mol (4393 without restraints) Performing minimization step: 3316. Total energy = 4396 kcal/mol (4392 without restraints) Performing minimization step: 3317. Total energy = 4394 kcal/mol (4390 without restraints) Performing minimization step: 3318. Total energy = 4393 kcal/mol (4389 without restraints) Performing minimization step: 3319. Total energy = 4392 kcal/mol (4388 without restraints) Performing minimization step: 3320. Total energy = 4390 kcal/mol (4386 without restraints) Performing minimization step: 3321. Total energy = 4389 kcal/mol (4385 without restraints) Performing minimization step: 3322. Total energy = 4388 kcal/mol (4384 without restraints) Performing minimization step: 3323. Total energy = 4387 kcal/mol (4383 without restraints) Performing minimization step: 3324. Total energy = 4385 kcal/mol (4381 without restraints) Performing minimization step: 3325. Total energy = 4384 kcal/mol (4380 without restraints) Performing minimization step: 3326. Total energy = 4383 kcal/mol (4379 without restraints) Performing minimization step: 3327. Total energy = 4381 kcal/mol (4377 without restraints) Performing minimization step: 3328. Total energy = 4380 kcal/mol (4376 without restraints) Performing minimization step: 3329. Total energy = 4379 kcal/mol (4375 without restraints) Performing minimization step: 3330. Total energy = 4377 kcal/mol (4373 without restraints) Performing minimization step: 3331. Total energy = 4376 kcal/mol (4372 without restraints) Performing minimization step: 3332. Total energy = 4375 kcal/mol (4371 without restraints) Performing minimization step: 3333. Total energy = 4374 kcal/mol (4370 without restraints) Performing minimization step: 3334. Total energy = 4372 kcal/mol (4368 without restraints) Performing minimization step: 3335. Total energy = 4371 kcal/mol (4367 without restraints) Performing minimization step: 3336. Total energy = 4370 kcal/mol (4366 without restraints) Performing minimization step: 3337. Total energy = 4368 kcal/mol (4364 without restraints) Performing minimization step: 3338. Total energy = 4367 kcal/mol (4363 without restraints) Performing minimization step: 3339. Total energy = 4366 kcal/mol (4362 without restraints) Performing minimization step: 3340. Total energy = 4364 kcal/mol (4361 without restraints) Performing minimization step: 3341. Total energy = 4363 kcal/mol (4359 without restraints) Performing minimization step: 3342. Total energy = 4362 kcal/mol (4358 without restraints) Performing minimization step: 3343. Total energy = 4361 kcal/mol (4357 without restraints) Performing minimization step: 3344. Total energy = 4359 kcal/mol (4355 without restraints) Performing minimization step: 3345. Total energy = 4358 kcal/mol (4354 without restraints) Performing minimization step: 3346. Total energy = 4357 kcal/mol (4353 without restraints) Performing minimization step: 3347. Total energy = 4355 kcal/mol (4352 without restraints) Performing minimization step: 3348. Total energy = 4354 kcal/mol (4350 without restraints) Performing minimization step: 3349. Total energy = 4353 kcal/mol (4349 without restraints) Performing minimization step: 3350. Total energy = 4352 kcal/mol (4348 without restraints) Performing minimization step: 3351. Total energy = 4350 kcal/mol (4346 without restraints) Performing minimization step: 3352. Total energy = 4349 kcal/mol (4345 without restraints) Performing minimization step: 3353. Total energy = 4348 kcal/mol (4344 without restraints) Performing minimization step: 3354. Total energy = 4346 kcal/mol (4343 without restraints) Performing minimization step: 3355. Total energy = 4345 kcal/mol (4341 without restraints) Performing minimization step: 3356. Total energy = 4344 kcal/mol (4340 without restraints) Performing minimization step: 3357. Total energy = 4343 kcal/mol (4339 without restraints) Performing minimization step: 3358. Total energy = 4341 kcal/mol (4337 without restraints) Performing minimization step: 3359. Total energy = 4340 kcal/mol (4336 without restraints) Performing minimization step: 3360. Total energy = 4339 kcal/mol (4335 without restraints) Performing minimization step: 3361. Total energy = 4338 kcal/mol (4334 without restraints) Performing minimization step: 3362. Total energy = 4336 kcal/mol (4332 without restraints) Performing minimization step: 3363. Total energy = 4335 kcal/mol (4331 without restraints) Performing minimization step: 3364. Total energy = 4334 kcal/mol (4330 without restraints) Performing minimization step: 3365. Total energy = 4332 kcal/mol (4329 without restraints) Performing minimization step: 3366. Total energy = 4331 kcal/mol (4327 without restraints) Performing minimization step: 3367. Total energy = 4330 kcal/mol (4326 without restraints) Performing minimization step: 3368. Total energy = 4329 kcal/mol (4325 without restraints) Performing minimization step: 3369. Total energy = 4327 kcal/mol (4323 without restraints) Performing minimization step: 3370. Total energy = 4326 kcal/mol (4322 without restraints) Performing minimization step: 3371. Total energy = 4325 kcal/mol (4321 without restraints) Performing minimization step: 3372. Total energy = 4324 kcal/mol (4320 without restraints) Performing minimization step: 3373. Total energy = 4322 kcal/mol (4318 without restraints) Performing minimization step: 3374. Total energy = 4321 kcal/mol (4317 without restraints) Performing minimization step: 3375. Total energy = 4320 kcal/mol (4316 without restraints) Performing minimization step: 3376. Total energy = 4319 kcal/mol (4315 without restraints) Performing minimization step: 3377. Total energy = 4317 kcal/mol (4313 without restraints) Performing minimization step: 3378. Total energy = 4316 kcal/mol (4312 without restraints) Performing minimization step: 3379. Total energy = 4315 kcal/mol (4311 without restraints) Performing minimization step: 3380. Total energy = 4313 kcal/mol (4310 without restraints) Performing minimization step: 3381. Total energy = 4312 kcal/mol (4308 without restraints) Performing minimization step: 3382. Total energy = 4311 kcal/mol (4307 without restraints) Performing minimization step: 3383. Total energy = 4310 kcal/mol (4306 without restraints) Performing minimization step: 3384. Total energy = 4308 kcal/mol (4305 without restraints) Performing minimization step: 3385. Total energy = 4307 kcal/mol (4303 without restraints) Performing minimization step: 3386. Total energy = 4306 kcal/mol (4302 without restraints) Performing minimization step: 3387. Total energy = 4305 kcal/mol (4301 without restraints) Performing minimization step: 3388. Total energy = 4303 kcal/mol (4300 without restraints) Performing minimization step: 3389. Total energy = 4302 kcal/mol (4298 without restraints) Performing minimization step: 3390. Total energy = 4301 kcal/mol (4297 without restraints) Performing minimization step: 3391. Total energy = 4300 kcal/mol (4296 without restraints) Performing minimization step: 3392. Total energy = 4298 kcal/mol (4295 without restraints) Performing minimization step: 3393. Total energy = 4297 kcal/mol (4293 without restraints) Performing minimization step: 3394. Total energy = 4296 kcal/mol (4292 without restraints) Performing minimization step: 3395. Total energy = 4295 kcal/mol (4291 without restraints) Performing minimization step: 3396. Total energy = 4293 kcal/mol (4290 without restraints) Performing minimization step: 3397. Total energy = 4292 kcal/mol (4288 without restraints) Performing minimization step: 3398. Total energy = 4291 kcal/mol (4287 without restraints) Performing minimization step: 3399. Total energy = 4290 kcal/mol (4286 without restraints) Performing minimization step: 3400. Total energy = 4288 kcal/mol (4285 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 4287 kcal/mol (4283 without restraints) Performing minimization step: 3402. Total energy = 4286 kcal/mol (4282 without restraints) Performing minimization step: 3403. Total energy = 4285 kcal/mol (4281 without restraints) Performing minimization step: 3404. Total energy = 4284 kcal/mol (4280 without restraints) Performing minimization step: 3405. Total energy = 4282 kcal/mol (4278 without restraints) Performing minimization step: 3406. Total energy = 4281 kcal/mol (4277 without restraints) Performing minimization step: 3407. Total energy = 4280 kcal/mol (4276 without restraints) Performing minimization step: 3408. Total energy = 4279 kcal/mol (4275 without restraints) Performing minimization step: 3409. Total energy = 4277 kcal/mol (4273 without restraints) Performing minimization step: 3410. Total energy = 4276 kcal/mol (4272 without restraints) Performing minimization step: 3411. Total energy = 4275 kcal/mol (4271 without restraints) Performing minimization step: 3412. Total energy = 4274 kcal/mol (4270 without restraints) Performing minimization step: 3413. Total energy = 4272 kcal/mol (4269 without restraints) Performing minimization step: 3414. Total energy = 4271 kcal/mol (4267 without restraints) Performing minimization step: 3415. Total energy = 4270 kcal/mol (4266 without restraints) Performing minimization step: 3416. Total energy = 4269 kcal/mol (4265 without restraints) Performing minimization step: 3417. Total energy = 4267 kcal/mol (4264 without restraints) Performing minimization step: 3418. Total energy = 4266 kcal/mol (4262 without restraints) Performing minimization step: 3419. Total energy = 4265 kcal/mol (4261 without restraints) Performing minimization step: 3420. Total energy = 4264 kcal/mol (4260 without restraints) Performing minimization step: 3421. Total energy = 4263 kcal/mol (4259 without restraints) Performing minimization step: 3422. Total energy = 4261 kcal/mol (4257 without restraints) Performing minimization step: 3423. Total energy = 4260 kcal/mol (4256 without restraints) Performing minimization step: 3424. Total energy = 4259 kcal/mol (4255 without restraints) Performing minimization step: 3425. Total energy = 4258 kcal/mol (4254 without restraints) Performing minimization step: 3426. Total energy = 4256 kcal/mol (4253 without restraints) Performing minimization step: 3427. Total energy = 4255 kcal/mol (4251 without restraints) Performing minimization step: 3428. Total energy = 4254 kcal/mol (4250 without restraints) Performing minimization step: 3429. Total energy = 4253 kcal/mol (4249 without restraints) Performing minimization step: 3430. Total energy = 4252 kcal/mol (4248 without restraints) Performing minimization step: 3431. Total energy = 4250 kcal/mol (4246 without restraints) Performing minimization step: 3432. Total energy = 4249 kcal/mol (4245 without restraints) Performing minimization step: 3433. Total energy = 4248 kcal/mol (4244 without restraints) Performing minimization step: 3434. Total energy = 4247 kcal/mol (4243 without restraints) Performing minimization step: 3435. Total energy = 4245 kcal/mol (4242 without restraints) Performing minimization step: 3436. Total energy = 4244 kcal/mol (4240 without restraints) Performing minimization step: 3437. Total energy = 4243 kcal/mol (4239 without restraints) Performing minimization step: 3438. Total energy = 4242 kcal/mol (4238 without restraints) Performing minimization step: 3439. Total energy = 4241 kcal/mol (4237 without restraints) Performing minimization step: 3440. Total energy = 4239 kcal/mol (4236 without restraints) Performing minimization step: 3441. Total energy = 4238 kcal/mol (4234 without restraints) Performing minimization step: 3442. Total energy = 4237 kcal/mol (4233 without restraints) Performing minimization step: 3443. Total energy = 4236 kcal/mol (4232 without restraints) Performing minimization step: 3444. Total energy = 4235 kcal/mol (4231 without restraints) Performing minimization step: 3445. Total energy = 4233 kcal/mol (4230 without restraints) Performing minimization step: 3446. Total energy = 4232 kcal/mol (4228 without restraints) Performing minimization step: 3447. Total energy = 4231 kcal/mol (4227 without restraints) Performing minimization step: 3448. Total energy = 4230 kcal/mol (4226 without restraints) Performing minimization step: 3449. Total energy = 4228 kcal/mol (4225 without restraints) Performing minimization step: 3450. Total energy = 4227 kcal/mol (4223 without restraints) Performing minimization step: 3451. Total energy = 4226 kcal/mol (4222 without restraints) Performing minimization step: 3452. Total energy = 4225 kcal/mol (4221 without restraints) Performing minimization step: 3453. Total energy = 4224 kcal/mol (4220 without restraints) Performing minimization step: 3454. Total energy = 4222 kcal/mol (4219 without restraints) Performing minimization step: 3455. Total energy = 4221 kcal/mol (4217 without restraints) Performing minimization step: 3456. Total energy = 4220 kcal/mol (4216 without restraints) Performing minimization step: 3457. Total energy = 4219 kcal/mol (4215 without restraints) Performing minimization step: 3458. Total energy = 4218 kcal/mol (4214 without restraints) Performing minimization step: 3459. Total energy = 4216 kcal/mol (4213 without restraints) Performing minimization step: 3460. Total energy = 4215 kcal/mol (4211 without restraints) Performing minimization step: 3461. Total energy = 4214 kcal/mol (4210 without restraints) Performing minimization step: 3462. Total energy = 4213 kcal/mol (4209 without restraints) Performing minimization step: 3463. Total energy = 4212 kcal/mol (4208 without restraints) Performing minimization step: 3464. Total energy = 4210 kcal/mol (4207 without restraints) Performing minimization step: 3465. Total energy = 4209 kcal/mol (4206 without restraints) Performing minimization step: 3466. Total energy = 4208 kcal/mol (4204 without restraints) Performing minimization step: 3467. Total energy = 4207 kcal/mol (4203 without restraints) Performing minimization step: 3468. Total energy = 4206 kcal/mol (4202 without restraints) Performing minimization step: 3469. Total energy = 4205 kcal/mol (4201 without restraints) Performing minimization step: 3470. Total energy = 4203 kcal/mol (4200 without restraints) Performing minimization step: 3471. Total energy = 4202 kcal/mol (4198 without restraints) Performing minimization step: 3472. Total energy = 4201 kcal/mol (4197 without restraints) Performing minimization step: 3473. Total energy = 4200 kcal/mol (4196 without restraints) Performing minimization step: 3474. Total energy = 4199 kcal/mol (4195 without restraints) Performing minimization step: 3475. Total energy = 4197 kcal/mol (4194 without restraints) Performing minimization step: 3476. Total energy = 4196 kcal/mol (4192 without restraints) Performing minimization step: 3477. Total energy = 4195 kcal/mol (4191 without restraints) Performing minimization step: 3478. Total energy = 4194 kcal/mol (4190 without restraints) Performing minimization step: 3479. Total energy = 4193 kcal/mol (4189 without restraints) Performing minimization step: 3480. Total energy = 4191 kcal/mol (4188 without restraints) Performing minimization step: 3481. Total energy = 4190 kcal/mol (4187 without restraints) Performing minimization step: 3482. Total energy = 4189 kcal/mol (4185 without restraints) Performing minimization step: 3483. Total energy = 4188 kcal/mol (4184 without restraints) Performing minimization step: 3484. Total energy = 4187 kcal/mol (4183 without restraints) Performing minimization step: 3485. Total energy = 4186 kcal/mol (4182 without restraints) Performing minimization step: 3486. Total energy = 4184 kcal/mol (4181 without restraints) Performing minimization step: 3487. Total energy = 4183 kcal/mol (4179 without restraints) Performing minimization step: 3488. Total energy = 4182 kcal/mol (4178 without restraints) Performing minimization step: 3489. Total energy = 4181 kcal/mol (4177 without restraints) Performing minimization step: 3490. Total energy = 4180 kcal/mol (4176 without restraints) Performing minimization step: 3491. Total energy = 4179 kcal/mol (4175 without restraints) Performing minimization step: 3492. Total energy = 4177 kcal/mol (4174 without restraints) Performing minimization step: 3493. Total energy = 4176 kcal/mol (4172 without restraints) Performing minimization step: 3494. Total energy = 4175 kcal/mol (4171 without restraints) Performing minimization step: 3495. Total energy = 4174 kcal/mol (4170 without restraints) Performing minimization step: 3496. Total energy = 4173 kcal/mol (4169 without restraints) Performing minimization step: 3497. Total energy = 4171 kcal/mol (4168 without restraints) Performing minimization step: 3498. Total energy = 4170 kcal/mol (4167 without restraints) Performing minimization step: 3499. Total energy = 4169 kcal/mol (4165 without restraints) Performing minimization step: 3500. Total energy = 4168 kcal/mol (4164 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 4167 kcal/mol (4163 without restraints) Performing minimization step: 3502. Total energy = 4166 kcal/mol (4162 without restraints) Performing minimization step: 3503. Total energy = 4164 kcal/mol (4161 without restraints) Performing minimization step: 3504. Total energy = 4163 kcal/mol (4160 without restraints) Performing minimization step: 3505. Total energy = 4162 kcal/mol (4158 without restraints) Performing minimization step: 3506. Total energy = 4161 kcal/mol (4157 without restraints) Performing minimization step: 3507. Total energy = 4160 kcal/mol (4156 without restraints) Performing minimization step: 3508. Total energy = 4159 kcal/mol (4155 without restraints) Performing minimization step: 3509. Total energy = 4158 kcal/mol (4154 without restraints) Performing minimization step: 3510. Total energy = 4156 kcal/mol (4153 without restraints) Performing minimization step: 3511. Total energy = 4155 kcal/mol (4151 without restraints) Performing minimization step: 3512. Total energy = 4154 kcal/mol (4150 without restraints) Performing minimization step: 3513. Total energy = 4153 kcal/mol (4149 without restraints) Performing minimization step: 3514. Total energy = 4152 kcal/mol (4148 without restraints) Performing minimization step: 3515. Total energy = 4151 kcal/mol (4147 without restraints) Performing minimization step: 3516. Total energy = 4149 kcal/mol (4146 without restraints) Performing minimization step: 3517. Total energy = 4148 kcal/mol (4145 without restraints) Performing minimization step: 3518. Total energy = 4147 kcal/mol (4143 without restraints) Performing minimization step: 3519. Total energy = 4146 kcal/mol (4142 without restraints) Performing minimization step: 3520. Total energy = 4145 kcal/mol (4141 without restraints) Performing minimization step: 3521. Total energy = 4144 kcal/mol (4140 without restraints) Performing minimization step: 3522. Total energy = 4142 kcal/mol (4139 without restraints) Performing minimization step: 3523. Total energy = 4141 kcal/mol (4138 without restraints) Performing minimization step: 3524. Total energy = 4140 kcal/mol (4136 without restraints) Performing minimization step: 3525. Total energy = 4139 kcal/mol (4135 without restraints) Performing minimization step: 3526. Total energy = 4138 kcal/mol (4134 without restraints) Performing minimization step: 3527. Total energy = 4137 kcal/mol (4133 without restraints) Performing minimization step: 3528. Total energy = 4136 kcal/mol (4132 without restraints) Performing minimization step: 3529. Total energy = 4134 kcal/mol (4131 without restraints) Performing minimization step: 3530. Total energy = 4133 kcal/mol (4130 without restraints) Performing minimization step: 3531. Total energy = 4132 kcal/mol (4128 without restraints) Performing minimization step: 3532. Total energy = 4131 kcal/mol (4127 without restraints) Performing minimization step: 3533. Total energy = 4130 kcal/mol (4126 without restraints) Performing minimization step: 3534. Total energy = 4129 kcal/mol (4125 without restraints) Performing minimization step: 3535. Total energy = 4128 kcal/mol (4124 without restraints) Performing minimization step: 3536. Total energy = 4126 kcal/mol (4123 without restraints) Performing minimization step: 3537. Total energy = 4125 kcal/mol (4122 without restraints) Performing minimization step: 3538. Total energy = 4124 kcal/mol (4120 without restraints) Performing minimization step: 3539. Total energy = 4123 kcal/mol (4119 without restraints) Performing minimization step: 3540. Total energy = 4122 kcal/mol (4118 without restraints) Performing minimization step: 3541. Total energy = 4121 kcal/mol (4117 without restraints) Performing minimization step: 3542. Total energy = 4120 kcal/mol (4116 without restraints) Performing minimization step: 3543. Total energy = 4118 kcal/mol (4115 without restraints) Performing minimization step: 3544. Total energy = 4117 kcal/mol (4114 without restraints) Performing minimization step: 3545. Total energy = 4116 kcal/mol (4112 without restraints) Performing minimization step: 3546. Total energy = 4115 kcal/mol (4111 without restraints) Performing minimization step: 3547. Total energy = 4114 kcal/mol (4110 without restraints) Performing minimization step: 3548. Total energy = 4113 kcal/mol (4109 without restraints) Performing minimization step: 3549. Total energy = 4112 kcal/mol (4108 without restraints) Performing minimization step: 3550. Total energy = 4110 kcal/mol (4107 without restraints) Performing minimization step: 3551. Total energy = 4109 kcal/mol (4106 without restraints) Performing minimization step: 3552. Total energy = 4108 kcal/mol (4105 without restraints) Performing minimization step: 3553. Total energy = 4107 kcal/mol (4103 without restraints) Performing minimization step: 3554. Total energy = 4106 kcal/mol (4102 without restraints) Performing minimization step: 3555. Total energy = 4105 kcal/mol (4101 without restraints) Performing minimization step: 3556. Total energy = 4104 kcal/mol (4100 without restraints) Performing minimization step: 3557. Total energy = 4103 kcal/mol (4099 without restraints) Performing minimization step: 3558. Total energy = 4101 kcal/mol (4098 without restraints) Performing minimization step: 3559. Total energy = 4100 kcal/mol (4097 without restraints) Performing minimization step: 3560. Total energy = 4099 kcal/mol (4096 without restraints) Performing minimization step: 3561. Total energy = 4098 kcal/mol (4094 without restraints) Performing minimization step: 3562. Total energy = 4097 kcal/mol (4093 without restraints) Performing minimization step: 3563. Total energy = 4096 kcal/mol (4092 without restraints) Performing minimization step: 3564. Total energy = 4095 kcal/mol (4091 without restraints) Performing minimization step: 3565. Total energy = 4094 kcal/mol (4090 without restraints) Performing minimization step: 3566. Total energy = 4092 kcal/mol (4089 without restraints) Performing minimization step: 3567. Total energy = 4091 kcal/mol (4088 without restraints) Performing minimization step: 3568. Total energy = 4090 kcal/mol (4087 without restraints) Performing minimization step: 3569. Total energy = 4089 kcal/mol (4085 without restraints) Performing minimization step: 3570. Total energy = 4088 kcal/mol (4084 without restraints) Performing minimization step: 3571. Total energy = 4087 kcal/mol (4083 without restraints) Performing minimization step: 3572. Total energy = 4086 kcal/mol (4082 without restraints) Performing minimization step: 3573. Total energy = 4085 kcal/mol (4081 without restraints) Performing minimization step: 3574. Total energy = 4084 kcal/mol (4080 without restraints) Performing minimization step: 3575. Total energy = 4082 kcal/mol (4079 without restraints) Performing minimization step: 3576. Total energy = 4081 kcal/mol (4078 without restraints) Performing minimization step: 3577. Total energy = 4080 kcal/mol (4077 without restraints) Performing minimization step: 3578. Total energy = 4079 kcal/mol (4075 without restraints) Performing minimization step: 3579. Total energy = 4078 kcal/mol (4074 without restraints) Performing minimization step: 3580. Total energy = 4077 kcal/mol (4073 without restraints) Performing minimization step: 3581. Total energy = 4076 kcal/mol (4072 without restraints) Performing minimization step: 3582. Total energy = 4075 kcal/mol (4071 without restraints) Performing minimization step: 3583. Total energy = 4074 kcal/mol (4070 without restraints) Performing minimization step: 3584. Total energy = 4072 kcal/mol (4069 without restraints) Performing minimization step: 3585. Total energy = 4071 kcal/mol (4068 without restraints) Performing minimization step: 3586. Total energy = 4070 kcal/mol (4067 without restraints) Performing minimization step: 3587. Total energy = 4069 kcal/mol (4065 without restraints) Performing minimization step: 3588. Total energy = 4068 kcal/mol (4064 without restraints) Performing minimization step: 3589. Total energy = 4067 kcal/mol (4063 without restraints) Performing minimization step: 3590. Total energy = 4066 kcal/mol (4062 without restraints) Performing minimization step: 3591. Total energy = 4065 kcal/mol (4061 without restraints) Performing minimization step: 3592. Total energy = 4064 kcal/mol (4060 without restraints) Performing minimization step: 3593. Total energy = 4062 kcal/mol (4059 without restraints) Performing minimization step: 3594. Total energy = 4061 kcal/mol (4058 without restraints) Performing minimization step: 3595. Total energy = 4060 kcal/mol (4057 without restraints) Performing minimization step: 3596. Total energy = 4059 kcal/mol (4056 without restraints) Performing minimization step: 3597. Total energy = 4058 kcal/mol (4054 without restraints) Performing minimization step: 3598. Total energy = 4057 kcal/mol (4053 without restraints) Performing minimization step: 3599. Total energy = 4056 kcal/mol (4052 without restraints) Performing minimization step: 3600. Total energy = 4055 kcal/mol (4051 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 4054 kcal/mol (4050 without restraints) Performing minimization step: 3602. Total energy = 4053 kcal/mol (4049 without restraints) Performing minimization step: 3603. Total energy = 4051 kcal/mol (4048 without restraints) Performing minimization step: 3604. Total energy = 4050 kcal/mol (4047 without restraints) Performing minimization step: 3605. Total energy = 4049 kcal/mol (4046 without restraints) Performing minimization step: 3606. Total energy = 4048 kcal/mol (4045 without restraints) Performing minimization step: 3607. Total energy = 4047 kcal/mol (4044 without restraints) Performing minimization step: 3608. Total energy = 4046 kcal/mol (4042 without restraints) Performing minimization step: 3609. Total energy = 4045 kcal/mol (4041 without restraints) Performing minimization step: 3610. Total energy = 4044 kcal/mol (4040 without restraints) Performing minimization step: 3611. Total energy = 4043 kcal/mol (4039 without restraints) Performing minimization step: 3612. Total energy = 4042 kcal/mol (4038 without restraints) Performing minimization step: 3613. Total energy = 4041 kcal/mol (4037 without restraints) Performing minimization step: 3614. Total energy = 4039 kcal/mol (4036 without restraints) Performing minimization step: 3615. Total energy = 4038 kcal/mol (4035 without restraints) Performing minimization step: 3616. Total energy = 4037 kcal/mol (4034 without restraints) Performing minimization step: 3617. Total energy = 4036 kcal/mol (4033 without restraints) Performing minimization step: 3618. Total energy = 4035 kcal/mol (4032 without restraints) Performing minimization step: 3619. Total energy = 4034 kcal/mol (4030 without restraints) Performing minimization step: 3620. Total energy = 4033 kcal/mol (4029 without restraints) Performing minimization step: 3621. Total energy = 4032 kcal/mol (4028 without restraints) Performing minimization step: 3622. Total energy = 4031 kcal/mol (4027 without restraints) Performing minimization step: 3623. Total energy = 4030 kcal/mol (4026 without restraints) Performing minimization step: 3624. Total energy = 4029 kcal/mol (4025 without restraints) Performing minimization step: 3625. Total energy = 4028 kcal/mol (4024 without restraints) Performing minimization step: 3626. Total energy = 4026 kcal/mol (4023 without restraints) Performing minimization step: 3627. Total energy = 4025 kcal/mol (4022 without restraints) Performing minimization step: 3628. Total energy = 4024 kcal/mol (4021 without restraints) Performing minimization step: 3629. Total energy = 4023 kcal/mol (4020 without restraints) Performing minimization step: 3630. Total energy = 4022 kcal/mol (4019 without restraints) Performing minimization step: 3631. Total energy = 4021 kcal/mol (4018 without restraints) Performing minimization step: 3632. Total energy = 4020 kcal/mol (4016 without restraints) Performing minimization step: 3633. Total energy = 4019 kcal/mol (4015 without restraints) Performing minimization step: 3634. Total energy = 4018 kcal/mol (4014 without restraints) Performing minimization step: 3635. Total energy = 4017 kcal/mol (4013 without restraints) Performing minimization step: 3636. Total energy = 4016 kcal/mol (4012 without restraints) Performing minimization step: 3637. Total energy = 4015 kcal/mol (4011 without restraints) Performing minimization step: 3638. Total energy = 4014 kcal/mol (4010 without restraints) Performing minimization step: 3639. Total energy = 4013 kcal/mol (4009 without restraints) Performing minimization step: 3640. Total energy = 4011 kcal/mol (4008 without restraints) Performing minimization step: 3641. Total energy = 4010 kcal/mol (4007 without restraints) Performing minimization step: 3642. Total energy = 4009 kcal/mol (4006 without restraints) Performing minimization step: 3643. Total energy = 4008 kcal/mol (4005 without restraints) Performing minimization step: 3644. Total energy = 4007 kcal/mol (4004 without restraints) Performing minimization step: 3645. Total energy = 4006 kcal/mol (4003 without restraints) Performing minimization step: 3646. Total energy = 4005 kcal/mol (4001 without restraints) Performing minimization step: 3647. Total energy = 4004 kcal/mol (4000 without restraints) Performing minimization step: 3648. Total energy = 4003 kcal/mol (3999 without restraints) Performing minimization step: 3649. Total energy = 4002 kcal/mol (3998 without restraints) Performing minimization step: 3650. Total energy = 4001 kcal/mol (3997 without restraints) Performing minimization step: 3651. Total energy = 4000 kcal/mol (3996 without restraints) Performing minimization step: 3652. Total energy = 3999 kcal/mol (3995 without restraints) Performing minimization step: 3653. Total energy = 3998 kcal/mol (3994 without restraints) Performing minimization step: 3654. Total energy = 3997 kcal/mol (3993 without restraints) Performing minimization step: 3655. Total energy = 3995 kcal/mol (3992 without restraints) Performing minimization step: 3656. Total energy = 3994 kcal/mol (3991 without restraints) Performing minimization step: 3657. Total energy = 3993 kcal/mol (3990 without restraints) Performing minimization step: 3658. Total energy = 3992 kcal/mol (3989 without restraints) Performing minimization step: 3659. Total energy = 3991 kcal/mol (3988 without restraints) Performing minimization step: 3660. Total energy = 3990 kcal/mol (3987 without restraints) Performing minimization step: 3661. Total energy = 3989 kcal/mol (3986 without restraints) Performing minimization step: 3662. Total energy = 3988 kcal/mol (3985 without restraints) Performing minimization step: 3663. Total energy = 3987 kcal/mol (3983 without restraints) Performing minimization step: 3664. Total energy = 3986 kcal/mol (3982 without restraints) Performing minimization step: 3665. Total energy = 3985 kcal/mol (3981 without restraints) Performing minimization step: 3666. Total energy = 3984 kcal/mol (3980 without restraints) Performing minimization step: 3667. Total energy = 3983 kcal/mol (3979 without restraints) Performing minimization step: 3668. Total energy = 3982 kcal/mol (3978 without restraints) Performing minimization step: 3669. Total energy = 3981 kcal/mol (3977 without restraints) Performing minimization step: 3670. Total energy = 3980 kcal/mol (3976 without restraints) Performing minimization step: 3671. Total energy = 3979 kcal/mol (3975 without restraints) Performing minimization step: 3672. Total energy = 3978 kcal/mol (3974 without restraints) Performing minimization step: 3673. Total energy = 3977 kcal/mol (3973 without restraints) Performing minimization step: 3674. Total energy = 3975 kcal/mol (3972 without restraints) Performing minimization step: 3675. Total energy = 3974 kcal/mol (3971 without restraints) Performing minimization step: 3676. Total energy = 3973 kcal/mol (3970 without restraints) Performing minimization step: 3677. Total energy = 3972 kcal/mol (3969 without restraints) Performing minimization step: 3678. Total energy = 3971 kcal/mol (3968 without restraints) Performing minimization step: 3679. Total energy = 3970 kcal/mol (3967 without restraints) Performing minimization step: 3680. Total energy = 3969 kcal/mol (3966 without restraints) Performing minimization step: 3681. Total energy = 3968 kcal/mol (3965 without restraints) Performing minimization step: 3682. Total energy = 3967 kcal/mol (3964 without restraints) Performing minimization step: 3683. Total energy = 3966 kcal/mol (3963 without restraints) Performing minimization step: 3684. Total energy = 3965 kcal/mol (3961 without restraints) Performing minimization step: 3685. Total energy = 3964 kcal/mol (3960 without restraints) Performing minimization step: 3686. Total energy = 3963 kcal/mol (3959 without restraints) Performing minimization step: 3687. Total energy = 3962 kcal/mol (3958 without restraints) Performing minimization step: 3688. Total energy = 3961 kcal/mol (3957 without restraints) Performing minimization step: 3689. Total energy = 3960 kcal/mol (3956 without restraints) Performing minimization step: 3690. Total energy = 3959 kcal/mol (3955 without restraints) Performing minimization step: 3691. Total energy = 3958 kcal/mol (3954 without restraints) Performing minimization step: 3692. Total energy = 3957 kcal/mol (3953 without restraints) Performing minimization step: 3693. Total energy = 3956 kcal/mol (3952 without restraints) Performing minimization step: 3694. Total energy = 3955 kcal/mol (3951 without restraints) Performing minimization step: 3695. Total energy = 3954 kcal/mol (3950 without restraints) Performing minimization step: 3696. Total energy = 3953 kcal/mol (3949 without restraints) Performing minimization step: 3697. Total energy = 3952 kcal/mol (3948 without restraints) Performing minimization step: 3698. Total energy = 3951 kcal/mol (3947 without restraints) Performing minimization step: 3699. Total energy = 3949 kcal/mol (3946 without restraints) Performing minimization step: 3700. Total energy = 3948 kcal/mol (3945 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 3947 kcal/mol (3944 without restraints) Performing minimization step: 3702. Total energy = 3946 kcal/mol (3943 without restraints) Performing minimization step: 3703. Total energy = 3945 kcal/mol (3942 without restraints) Performing minimization step: 3704. Total energy = 3944 kcal/mol (3941 without restraints) Performing minimization step: 3705. Total energy = 3943 kcal/mol (3940 without restraints) Performing minimization step: 3706. Total energy = 3942 kcal/mol (3939 without restraints) Performing minimization step: 3707. Total energy = 3941 kcal/mol (3938 without restraints) Performing minimization step: 3708. Total energy = 3940 kcal/mol (3937 without restraints) Performing minimization step: 3709. Total energy = 3939 kcal/mol (3936 without restraints) Performing minimization step: 3710. Total energy = 3938 kcal/mol (3935 without restraints) Performing minimization step: 3711. Total energy = 3937 kcal/mol (3934 without restraints) Performing minimization step: 3712. Total energy = 3936 kcal/mol (3933 without restraints) Performing minimization step: 3713. Total energy = 3935 kcal/mol (3932 without restraints) Performing minimization step: 3714. Total energy = 3934 kcal/mol (3931 without restraints) Performing minimization step: 3715. Total energy = 3933 kcal/mol (3930 without restraints) Performing minimization step: 3716. Total energy = 3932 kcal/mol (3929 without restraints) Performing minimization step: 3717. Total energy = 3931 kcal/mol (3928 without restraints) Performing minimization step: 3718. Total energy = 3930 kcal/mol (3927 without restraints) Performing minimization step: 3719. Total energy = 3929 kcal/mol (3926 without restraints) Performing minimization step: 3720. Total energy = 3928 kcal/mol (3924 without restraints) Performing minimization step: 3721. Total energy = 3927 kcal/mol (3923 without restraints) Performing minimization step: 3722. Total energy = 3926 kcal/mol (3922 without restraints) Performing minimization step: 3723. Total energy = 3925 kcal/mol (3921 without restraints) Performing minimization step: 3724. Total energy = 3924 kcal/mol (3920 without restraints) Performing minimization step: 3725. Total energy = 3923 kcal/mol (3919 without restraints) Performing minimization step: 3726. Total energy = 3922 kcal/mol (3918 without restraints) Performing minimization step: 3727. Total energy = 3921 kcal/mol (3917 without restraints) Performing minimization step: 3728. Total energy = 3920 kcal/mol (3916 without restraints) Performing minimization step: 3729. Total energy = 3919 kcal/mol (3915 without restraints) Performing minimization step: 3730. Total energy = 3918 kcal/mol (3914 without restraints) Performing minimization step: 3731. Total energy = 3917 kcal/mol (3913 without restraints) Performing minimization step: 3732. Total energy = 3916 kcal/mol (3912 without restraints) Performing minimization step: 3733. Total energy = 3915 kcal/mol (3911 without restraints) Performing minimization step: 3734. Total energy = 3914 kcal/mol (3910 without restraints) Performing minimization step: 3735. Total energy = 3913 kcal/mol (3909 without restraints) Performing minimization step: 3736. Total energy = 3912 kcal/mol (3908 without restraints) Performing minimization step: 3737. Total energy = 3911 kcal/mol (3907 without restraints) Performing minimization step: 3738. Total energy = 3910 kcal/mol (3906 without restraints) Performing minimization step: 3739. Total energy = 3909 kcal/mol (3905 without restraints) Performing minimization step: 3740. Total energy = 3908 kcal/mol (3904 without restraints) Performing minimization step: 3741. Total energy = 3907 kcal/mol (3903 without restraints) Performing minimization step: 3742. Total energy = 3906 kcal/mol (3902 without restraints) Performing minimization step: 3743. Total energy = 3905 kcal/mol (3901 without restraints) Performing minimization step: 3744. Total energy = 3904 kcal/mol (3900 without restraints) Performing minimization step: 3745. Total energy = 3903 kcal/mol (3899 without restraints) Performing minimization step: 3746. Total energy = 3902 kcal/mol (3898 without restraints) Performing minimization step: 3747. Total energy = 3901 kcal/mol (3897 without restraints) Performing minimization step: 3748. Total energy = 3900 kcal/mol (3896 without restraints) Performing minimization step: 3749. Total energy = 3899 kcal/mol (3895 without restraints) Performing minimization step: 3750. Total energy = 3898 kcal/mol (3894 without restraints) Performing minimization step: 3751. Total energy = 3897 kcal/mol (3893 without restraints) Performing minimization step: 3752. Total energy = 3896 kcal/mol (3892 without restraints) Performing minimization step: 3753. Total energy = 3895 kcal/mol (3891 without restraints) Performing minimization step: 3754. Total energy = 3894 kcal/mol (3890 without restraints) Performing minimization step: 3755. Total energy = 3893 kcal/mol (3889 without restraints) Performing minimization step: 3756. Total energy = 3892 kcal/mol (3888 without restraints) Performing minimization step: 3757. Total energy = 3891 kcal/mol (3887 without restraints) Performing minimization step: 3758. Total energy = 3890 kcal/mol (3886 without restraints) Performing minimization step: 3759. Total energy = 3889 kcal/mol (3885 without restraints) Performing minimization step: 3760. Total energy = 3888 kcal/mol (3884 without restraints) Performing minimization step: 3761. Total energy = 3887 kcal/mol (3883 without restraints) Performing minimization step: 3762. Total energy = 3886 kcal/mol (3882 without restraints) Performing minimization step: 3763. Total energy = 3885 kcal/mol (3881 without restraints) Performing minimization step: 3764. Total energy = 3884 kcal/mol (3880 without restraints) Performing minimization step: 3765. Total energy = 3883 kcal/mol (3879 without restraints) Performing minimization step: 3766. Total energy = 3882 kcal/mol (3878 without restraints) Performing minimization step: 3767. Total energy = 3881 kcal/mol (3877 without restraints) Performing minimization step: 3768. Total energy = 3880 kcal/mol (3876 without restraints) Performing minimization step: 3769. Total energy = 3879 kcal/mol (3875 without restraints) Performing minimization step: 3770. Total energy = 3878 kcal/mol (3874 without restraints) Performing minimization step: 3771. Total energy = 3877 kcal/mol (3873 without restraints) Performing minimization step: 3772. Total energy = 3876 kcal/mol (3872 without restraints) Performing minimization step: 3773. Total energy = 3875 kcal/mol (3871 without restraints) Performing minimization step: 3774. Total energy = 3874 kcal/mol (3871 without restraints) Performing minimization step: 3775. Total energy = 3873 kcal/mol (3870 without restraints) Performing minimization step: 3776. Total energy = 3872 kcal/mol (3869 without restraints) Performing minimization step: 3777. Total energy = 3871 kcal/mol (3868 without restraints) Performing minimization step: 3778. Total energy = 3870 kcal/mol (3867 without restraints) Performing minimization step: 3779. Total energy = 3869 kcal/mol (3866 without restraints) Performing minimization step: 3780. Total energy = 3868 kcal/mol (3865 without restraints) Performing minimization step: 3781. Total energy = 3867 kcal/mol (3864 without restraints) Performing minimization step: 3782. Total energy = 3866 kcal/mol (3863 without restraints) Performing minimization step: 3783. Total energy = 3865 kcal/mol (3862 without restraints) Performing minimization step: 3784. Total energy = 3864 kcal/mol (3861 without restraints) Performing minimization step: 3785. Total energy = 3863 kcal/mol (3860 without restraints) Performing minimization step: 3786. Total energy = 3862 kcal/mol (3859 without restraints) Performing minimization step: 3787. Total energy = 3861 kcal/mol (3858 without restraints) Performing minimization step: 3788. Total energy = 3860 kcal/mol (3857 without restraints) Performing minimization step: 3789. Total energy = 3859 kcal/mol (3856 without restraints) Performing minimization step: 3790. Total energy = 3858 kcal/mol (3855 without restraints) Performing minimization step: 3791. Total energy = 3857 kcal/mol (3854 without restraints) Performing minimization step: 3792. Total energy = 3856 kcal/mol (3853 without restraints) Performing minimization step: 3793. Total energy = 3855 kcal/mol (3852 without restraints) Performing minimization step: 3794. Total energy = 3854 kcal/mol (3851 without restraints) Performing minimization step: 3795. Total energy = 3853 kcal/mol (3850 without restraints) Performing minimization step: 3796. Total energy = 3852 kcal/mol (3849 without restraints) Performing minimization step: 3797. Total energy = 3851 kcal/mol (3848 without restraints) Performing minimization step: 3798. Total energy = 3851 kcal/mol (3847 without restraints) Performing minimization step: 3799. Total energy = 3850 kcal/mol (3846 without restraints) Performing minimization step: 3800. Total energy = 3849 kcal/mol (3845 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 3848 kcal/mol (3844 without restraints) Performing minimization step: 3802. Total energy = 3847 kcal/mol (3843 without restraints) Performing minimization step: 3803. Total energy = 3846 kcal/mol (3842 without restraints) Performing minimization step: 3804. Total energy = 3845 kcal/mol (3841 without restraints) Performing minimization step: 3805. Total energy = 3844 kcal/mol (3840 without restraints) Performing minimization step: 3806. Total energy = 3843 kcal/mol (3839 without restraints) Performing minimization step: 3807. Total energy = 3842 kcal/mol (3838 without restraints) Performing minimization step: 3808. Total energy = 3841 kcal/mol (3837 without restraints) Performing minimization step: 3809. Total energy = 3840 kcal/mol (3836 without restraints) Performing minimization step: 3810. Total energy = 3839 kcal/mol (3836 without restraints) Performing minimization step: 3811. Total energy = 3838 kcal/mol (3835 without restraints) Performing minimization step: 3812. Total energy = 3837 kcal/mol (3834 without restraints) Performing minimization step: 3813. Total energy = 3836 kcal/mol (3833 without restraints) Performing minimization step: 3814. Total energy = 3835 kcal/mol (3832 without restraints) Performing minimization step: 3815. Total energy = 3834 kcal/mol (3831 without restraints) Performing minimization step: 3816. Total energy = 3833 kcal/mol (3830 without restraints) Performing minimization step: 3817. Total energy = 3832 kcal/mol (3829 without restraints) Performing minimization step: 3818. Total energy = 3831 kcal/mol (3828 without restraints) Performing minimization step: 3819. Total energy = 3830 kcal/mol (3827 without restraints) Performing minimization step: 3820. Total energy = 3829 kcal/mol (3826 without restraints) Performing minimization step: 3821. Total energy = 3828 kcal/mol (3825 without restraints) Performing minimization step: 3822. Total energy = 3827 kcal/mol (3824 without restraints) Performing minimization step: 3823. Total energy = 3826 kcal/mol (3823 without restraints) Performing minimization step: 3824. Total energy = 3826 kcal/mol (3822 without restraints) Performing minimization step: 3825. Total energy = 3825 kcal/mol (3821 without restraints) Performing minimization step: 3826. Total energy = 3824 kcal/mol (3820 without restraints) Performing minimization step: 3827. Total energy = 3823 kcal/mol (3819 without restraints) Performing minimization step: 3828. Total energy = 3822 kcal/mol (3818 without restraints) Performing minimization step: 3829. Total energy = 3821 kcal/mol (3817 without restraints) Performing minimization step: 3830. Total energy = 3820 kcal/mol (3816 without restraints) Performing minimization step: 3831. Total energy = 3819 kcal/mol (3815 without restraints) Performing minimization step: 3832. Total energy = 3818 kcal/mol (3815 without restraints) Performing minimization step: 3833. Total energy = 3817 kcal/mol (3814 without restraints) Performing minimization step: 3834. Total energy = 3816 kcal/mol (3813 without restraints) Performing minimization step: 3835. Total energy = 3815 kcal/mol (3812 without restraints) Performing minimization step: 3836. Total energy = 3814 kcal/mol (3811 without restraints) Performing minimization step: 3837. Total energy = 3813 kcal/mol (3810 without restraints) Performing minimization step: 3838. Total energy = 3812 kcal/mol (3809 without restraints) Performing minimization step: 3839. Total energy = 3811 kcal/mol (3808 without restraints) Performing minimization step: 3840. Total energy = 3810 kcal/mol (3807 without restraints) Performing minimization step: 3841. Total energy = 3809 kcal/mol (3806 without restraints) Performing minimization step: 3842. Total energy = 3808 kcal/mol (3805 without restraints) Performing minimization step: 3843. Total energy = 3808 kcal/mol (3804 without restraints) Performing minimization step: 3844. Total energy = 3807 kcal/mol (3803 without restraints) Performing minimization step: 3845. Total energy = 3806 kcal/mol (3802 without restraints) Performing minimization step: 3846. Total energy = 3805 kcal/mol (3801 without restraints) Performing minimization step: 3847. Total energy = 3804 kcal/mol (3800 without restraints) Performing minimization step: 3848. Total energy = 3803 kcal/mol (3799 without restraints) Performing minimization step: 3849. Total energy = 3802 kcal/mol (3798 without restraints) Performing minimization step: 3850. Total energy = 3801 kcal/mol (3798 without restraints) Performing minimization step: 3851. Total energy = 3800 kcal/mol (3797 without restraints) Performing minimization step: 3852. Total energy = 3799 kcal/mol (3796 without restraints) Performing minimization step: 3853. Total energy = 3798 kcal/mol (3795 without restraints) Performing minimization step: 3854. Total energy = 3797 kcal/mol (3794 without restraints) Performing minimization step: 3855. Total energy = 3796 kcal/mol (3793 without restraints) Performing minimization step: 3856. Total energy = 3795 kcal/mol (3792 without restraints) Performing minimization step: 3857. Total energy = 3794 kcal/mol (3791 without restraints) Performing minimization step: 3858. Total energy = 3793 kcal/mol (3790 without restraints) Performing minimization step: 3859. Total energy = 3792 kcal/mol (3789 without restraints) Performing minimization step: 3860. Total energy = 3792 kcal/mol (3788 without restraints) Performing minimization step: 3861. Total energy = 3791 kcal/mol (3787 without restraints) Performing minimization step: 3862. Total energy = 3790 kcal/mol (3786 without restraints) Performing minimization step: 3863. Total energy = 3789 kcal/mol (3785 without restraints) Performing minimization step: 3864. Total energy = 3788 kcal/mol (3784 without restraints) Performing minimization step: 3865. Total energy = 3787 kcal/mol (3784 without restraints) Performing minimization step: 3866. Total energy = 3786 kcal/mol (3783 without restraints) Performing minimization step: 3867. Total energy = 3785 kcal/mol (3782 without restraints) Performing minimization step: 3868. Total energy = 3784 kcal/mol (3781 without restraints) Performing minimization step: 3869. Total energy = 3783 kcal/mol (3780 without restraints) Performing minimization step: 3870. Total energy = 3782 kcal/mol (3779 without restraints) Performing minimization step: 3871. Total energy = 3781 kcal/mol (3778 without restraints) Performing minimization step: 3872. Total energy = 3780 kcal/mol (3777 without restraints) Performing minimization step: 3873. Total energy = 3779 kcal/mol (3776 without restraints) Performing minimization step: 3874. Total energy = 3779 kcal/mol (3775 without restraints) Performing minimization step: 3875. Total energy = 3778 kcal/mol (3774 without restraints) Performing minimization step: 3876. Total energy = 3777 kcal/mol (3773 without restraints) Performing minimization step: 3877. Total energy = 3776 kcal/mol (3772 without restraints) Performing minimization step: 3878. Total energy = 3775 kcal/mol (3772 without restraints) Performing minimization step: 3879. Total energy = 3774 kcal/mol (3771 without restraints) Performing minimization step: 3880. Total energy = 3773 kcal/mol (3770 without restraints) Performing minimization step: 3881. Total energy = 3772 kcal/mol (3769 without restraints) Performing minimization step: 3882. Total energy = 3771 kcal/mol (3768 without restraints) Performing minimization step: 3883. Total energy = 3770 kcal/mol (3767 without restraints) Performing minimization step: 3884. Total energy = 3769 kcal/mol (3766 without restraints) Performing minimization step: 3885. Total energy = 3768 kcal/mol (3765 without restraints) Performing minimization step: 3886. Total energy = 3768 kcal/mol (3764 without restraints) Performing minimization step: 3887. Total energy = 3767 kcal/mol (3763 without restraints) Performing minimization step: 3888. Total energy = 3766 kcal/mol (3762 without restraints) Performing minimization step: 3889. Total energy = 3765 kcal/mol (3761 without restraints) Performing minimization step: 3890. Total energy = 3764 kcal/mol (3761 without restraints) Performing minimization step: 3891. Total energy = 3763 kcal/mol (3760 without restraints) Performing minimization step: 3892. Total energy = 3762 kcal/mol (3759 without restraints) Performing minimization step: 3893. Total energy = 3761 kcal/mol (3758 without restraints) Performing minimization step: 3894. Total energy = 3760 kcal/mol (3757 without restraints) Performing minimization step: 3895. Total energy = 3759 kcal/mol (3756 without restraints) Performing minimization step: 3896. Total energy = 3758 kcal/mol (3755 without restraints) Performing minimization step: 3897. Total energy = 3757 kcal/mol (3754 without restraints) Performing minimization step: 3898. Total energy = 3757 kcal/mol (3753 without restraints) Performing minimization step: 3899. Total energy = 3756 kcal/mol (3752 without restraints) Performing minimization step: 3900. Total energy = 3755 kcal/mol (3751 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 3754 kcal/mol (3751 without restraints) Performing minimization step: 3902. Total energy = 3753 kcal/mol (3750 without restraints) Performing minimization step: 3903. Total energy = 3752 kcal/mol (3749 without restraints) Performing minimization step: 3904. Total energy = 3751 kcal/mol (3748 without restraints) Performing minimization step: 3905. Total energy = 3750 kcal/mol (3747 without restraints) Performing minimization step: 3906. Total energy = 3749 kcal/mol (3746 without restraints) Performing minimization step: 3907. Total energy = 3748 kcal/mol (3745 without restraints) Performing minimization step: 3908. Total energy = 3747 kcal/mol (3744 without restraints) Performing minimization step: 3909. Total energy = 3747 kcal/mol (3743 without restraints) Performing minimization step: 3910. Total energy = 3746 kcal/mol (3742 without restraints) Performing minimization step: 3911. Total energy = 3745 kcal/mol (3741 without restraints) Performing minimization step: 3912. Total energy = 3744 kcal/mol (3741 without restraints) Performing minimization step: 3913. Total energy = 3743 kcal/mol (3740 without restraints) Performing minimization step: 3914. Total energy = 3742 kcal/mol (3739 without restraints) Performing minimization step: 3915. Total energy = 3741 kcal/mol (3738 without restraints) Performing minimization step: 3916. Total energy = 3740 kcal/mol (3737 without restraints) Performing minimization step: 3917. Total energy = 3739 kcal/mol (3736 without restraints) Performing minimization step: 3918. Total energy = 3738 kcal/mol (3735 without restraints) Performing minimization step: 3919. Total energy = 3738 kcal/mol (3734 without restraints) Performing minimization step: 3920. Total energy = 3737 kcal/mol (3733 without restraints) Performing minimization step: 3921. Total energy = 3736 kcal/mol (3732 without restraints) Performing minimization step: 3922. Total energy = 3735 kcal/mol (3732 without restraints) Performing minimization step: 3923. Total energy = 3734 kcal/mol (3731 without restraints) Performing minimization step: 3924. Total energy = 3733 kcal/mol (3730 without restraints) Performing minimization step: 3925. Total energy = 3732 kcal/mol (3729 without restraints) Performing minimization step: 3926. Total energy = 3731 kcal/mol (3728 without restraints) Performing minimization step: 3927. Total energy = 3730 kcal/mol (3727 without restraints) Performing minimization step: 3928. Total energy = 3729 kcal/mol (3726 without restraints) Performing minimization step: 3929. Total energy = 3729 kcal/mol (3725 without restraints) Performing minimization step: 3930. Total energy = 3728 kcal/mol (3724 without restraints) Performing minimization step: 3931. Total energy = 3727 kcal/mol (3724 without restraints) Performing minimization step: 3932. Total energy = 3726 kcal/mol (3723 without restraints) Performing minimization step: 3933. Total energy = 3725 kcal/mol (3722 without restraints) Performing minimization step: 3934. Total energy = 3724 kcal/mol (3721 without restraints) Performing minimization step: 3935. Total energy = 3723 kcal/mol (3720 without restraints) Performing minimization step: 3936. Total energy = 3722 kcal/mol (3719 without restraints) Performing minimization step: 3937. Total energy = 3721 kcal/mol (3718 without restraints) Performing minimization step: 3938. Total energy = 3721 kcal/mol (3717 without restraints) Performing minimization step: 3939. Total energy = 3720 kcal/mol (3716 without restraints) Performing minimization step: 3940. Total energy = 3719 kcal/mol (3716 without restraints) Performing minimization step: 3941. Total energy = 3718 kcal/mol (3715 without restraints) Performing minimization step: 3942. Total energy = 3717 kcal/mol (3714 without restraints) Performing minimization step: 3943. Total energy = 3716 kcal/mol (3713 without restraints) Performing minimization step: 3944. Total energy = 3715 kcal/mol (3712 without restraints) Performing minimization step: 3945. Total energy = 3714 kcal/mol (3711 without restraints) Performing minimization step: 3946. Total energy = 3713 kcal/mol (3710 without restraints) Performing minimization step: 3947. Total energy = 3713 kcal/mol (3709 without restraints) Performing minimization step: 3948. Total energy = 3712 kcal/mol (3708 without restraints) Performing minimization step: 3949. Total energy = 3711 kcal/mol (3708 without restraints) Performing minimization step: 3950. Total energy = 3710 kcal/mol (3707 without restraints) Performing minimization step: 3951. Total energy = 3709 kcal/mol (3706 without restraints) Performing minimization step: 3952. Total energy = 3708 kcal/mol (3705 without restraints) Performing minimization step: 3953. Total energy = 3707 kcal/mol (3704 without restraints) Performing minimization step: 3954. Total energy = 3706 kcal/mol (3703 without restraints) Performing minimization step: 3955. Total energy = 3706 kcal/mol (3702 without restraints) Performing minimization step: 3956. Total energy = 3705 kcal/mol (3701 without restraints) Performing minimization step: 3957. Total energy = 3704 kcal/mol (3701 without restraints) Performing minimization step: 3958. Total energy = 3703 kcal/mol (3700 without restraints) Performing minimization step: 3959. Total energy = 3702 kcal/mol (3699 without restraints) Performing minimization step: 3960. Total energy = 3701 kcal/mol (3698 without restraints) Performing minimization step: 3961. Total energy = 3700 kcal/mol (3697 without restraints) Performing minimization step: 3962. Total energy = 3699 kcal/mol (3696 without restraints) Performing minimization step: 3963. Total energy = 3699 kcal/mol (3695 without restraints) Performing minimization step: 3964. Total energy = 3698 kcal/mol (3694 without restraints) Performing minimization step: 3965. Total energy = 3697 kcal/mol (3694 without restraints) Performing minimization step: 3966. Total energy = 3696 kcal/mol (3693 without restraints) Performing minimization step: 3967. Total energy = 3695 kcal/mol (3692 without restraints) Performing minimization step: 3968. Total energy = 3694 kcal/mol (3691 without restraints) Performing minimization step: 3969. Total energy = 3693 kcal/mol (3690 without restraints) Performing minimization step: 3970. Total energy = 3692 kcal/mol (3689 without restraints) Performing minimization step: 3971. Total energy = 3692 kcal/mol (3688 without restraints) Performing minimization step: 3972. Total energy = 3691 kcal/mol (3687 without restraints) Performing minimization step: 3973. Total energy = 3690 kcal/mol (3687 without restraints) Performing minimization step: 3974. Total energy = 3689 kcal/mol (3686 without restraints) Performing minimization step: 3975. Total energy = 3688 kcal/mol (3685 without restraints) Performing minimization step: 3976. Total energy = 3687 kcal/mol (3684 without restraints) Performing minimization step: 3977. Total energy = 3686 kcal/mol (3683 without restraints) Performing minimization step: 3978. Total energy = 3685 kcal/mol (3682 without restraints) Performing minimization step: 3979. Total energy = 3685 kcal/mol (3681 without restraints) Performing minimization step: 3980. Total energy = 3684 kcal/mol (3680 without restraints) Performing minimization step: 3981. Total energy = 3683 kcal/mol (3680 without restraints) Performing minimization step: 3982. Total energy = 3682 kcal/mol (3679 without restraints) Performing minimization step: 3983. Total energy = 3681 kcal/mol (3678 without restraints) Performing minimization step: 3984. Total energy = 3680 kcal/mol (3677 without restraints) Performing minimization step: 3985. Total energy = 3679 kcal/mol (3676 without restraints) Performing minimization step: 3986. Total energy = 3679 kcal/mol (3675 without restraints) Performing minimization step: 3987. Total energy = 3678 kcal/mol (3674 without restraints) Performing minimization step: 3988. Total energy = 3677 kcal/mol (3674 without restraints) Performing minimization step: 3989. Total energy = 3676 kcal/mol (3673 without restraints) Performing minimization step: 3990. Total energy = 3675 kcal/mol (3672 without restraints) Performing minimization step: 3991. Total energy = 3674 kcal/mol (3671 without restraints) Performing minimization step: 3992. Total energy = 3673 kcal/mol (3670 without restraints) Performing minimization step: 3993. Total energy = 3673 kcal/mol (3669 without restraints) Performing minimization step: 3994. Total energy = 3672 kcal/mol (3668 without restraints) Performing minimization step: 3995. Total energy = 3671 kcal/mol (3668 without restraints) Performing minimization step: 3996. Total energy = 3670 kcal/mol (3667 without restraints) Performing minimization step: 3997. Total energy = 3669 kcal/mol (3666 without restraints) Performing minimization step: 3998. Total energy = 3668 kcal/mol (3665 without restraints) Performing minimization step: 3999. Total energy = 3667 kcal/mol (3664 without restraints) Performing minimization step: 4000. Total energy = 3667 kcal/mol (3663 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 3666 kcal/mol (3662 without restraints) Performing minimization step: 4002. Total energy = 3665 kcal/mol (3662 without restraints) Performing minimization step: 4003. Total energy = 3664 kcal/mol (3661 without restraints) Performing minimization step: 4004. Total energy = 3663 kcal/mol (3660 without restraints) Performing minimization step: 4005. Total energy = 3662 kcal/mol (3659 without restraints) Performing minimization step: 4006. Total energy = 3661 kcal/mol (3658 without restraints) Performing minimization step: 4007. Total energy = 3661 kcal/mol (3657 without restraints) Performing minimization step: 4008. Total energy = 3660 kcal/mol (3656 without restraints) Performing minimization step: 4009. Total energy = 3659 kcal/mol (3656 without restraints) Performing minimization step: 4010. Total energy = 3658 kcal/mol (3655 without restraints) Performing minimization step: 4011. Total energy = 3657 kcal/mol (3654 without restraints) Performing minimization step: 4012. Total energy = 3656 kcal/mol (3653 without restraints) Performing minimization step: 4013. Total energy = 3655 kcal/mol (3652 without restraints) Performing minimization step: 4014. Total energy = 3655 kcal/mol (3651 without restraints) Performing minimization step: 4015. Total energy = 3654 kcal/mol (3651 without restraints) Performing minimization step: 4016. Total energy = 3653 kcal/mol (3650 without restraints) Performing minimization step: 4017. Total energy = 3652 kcal/mol (3649 without restraints) Performing minimization step: 4018. Total energy = 3651 kcal/mol (3648 without restraints) Performing minimization step: 4019. Total energy = 3650 kcal/mol (3647 without restraints) Performing minimization step: 4020. Total energy = 3650 kcal/mol (3646 without restraints) Performing minimization step: 4021. Total energy = 3649 kcal/mol (3645 without restraints) Performing minimization step: 4022. Total energy = 3648 kcal/mol (3645 without restraints) Performing minimization step: 4023. Total energy = 3647 kcal/mol (3644 without restraints) Performing minimization step: 4024. Total energy = 3646 kcal/mol (3643 without restraints) Performing minimization step: 4025. Total energy = 3645 kcal/mol (3642 without restraints) Performing minimization step: 4026. Total energy = 3644 kcal/mol (3641 without restraints) Performing minimization step: 4027. Total energy = 3644 kcal/mol (3640 without restraints) Performing minimization step: 4028. Total energy = 3643 kcal/mol (3640 without restraints) Performing minimization step: 4029. Total energy = 3642 kcal/mol (3639 without restraints) Performing minimization step: 4030. Total energy = 3641 kcal/mol (3638 without restraints) Performing minimization step: 4031. Total energy = 3640 kcal/mol (3637 without restraints) Performing minimization step: 4032. Total energy = 3639 kcal/mol (3636 without restraints) Performing minimization step: 4033. Total energy = 3639 kcal/mol (3635 without restraints) Performing minimization step: 4034. Total energy = 3638 kcal/mol (3635 without restraints) Performing minimization step: 4035. Total energy = 3637 kcal/mol (3634 without restraints) Performing minimization step: 4036. Total energy = 3636 kcal/mol (3633 without restraints) Performing minimization step: 4037. Total energy = 3635 kcal/mol (3632 without restraints) Performing minimization step: 4038. Total energy = 3634 kcal/mol (3631 without restraints) Performing minimization step: 4039. Total energy = 3634 kcal/mol (3630 without restraints) Performing minimization step: 4040. Total energy = 3633 kcal/mol (3630 without restraints) Performing minimization step: 4041. Total energy = 3632 kcal/mol (3629 without restraints) Performing minimization step: 4042. Total energy = 3631 kcal/mol (3628 without restraints) Performing minimization step: 4043. Total energy = 3630 kcal/mol (3627 without restraints) Performing minimization step: 4044. Total energy = 3629 kcal/mol (3626 without restraints) Performing minimization step: 4045. Total energy = 3629 kcal/mol (3625 without restraints) Performing minimization step: 4046. Total energy = 3628 kcal/mol (3625 without restraints) Performing minimization step: 4047. Total energy = 3627 kcal/mol (3624 without restraints) Performing minimization step: 4048. Total energy = 3626 kcal/mol (3623 without restraints) Performing minimization step: 4049. Total energy = 3625 kcal/mol (3622 without restraints) Performing minimization step: 4050. Total energy = 3624 kcal/mol (3621 without restraints) Performing minimization step: 4051. Total energy = 3624 kcal/mol (3620 without restraints) Performing minimization step: 4052. Total energy = 3623 kcal/mol (3620 without restraints) Performing minimization step: 4053. Total energy = 3622 kcal/mol (3619 without restraints) Performing minimization step: 4054. Total energy = 3621 kcal/mol (3618 without restraints) Performing minimization step: 4055. Total energy = 3620 kcal/mol (3617 without restraints) Performing minimization step: 4056. Total energy = 3619 kcal/mol (3616 without restraints) Performing minimization step: 4057. Total energy = 3619 kcal/mol (3615 without restraints) Performing minimization step: 4058. Total energy = 3618 kcal/mol (3615 without restraints) Performing minimization step: 4059. Total energy = 3617 kcal/mol (3614 without restraints) Performing minimization step: 4060. Total energy = 3616 kcal/mol (3613 without restraints) Performing minimization step: 4061. Total energy = 3615 kcal/mol (3612 without restraints) Performing minimization step: 4062. Total energy = 3615 kcal/mol (3611 without restraints) Performing minimization step: 4063. Total energy = 3614 kcal/mol (3611 without restraints) Performing minimization step: 4064. Total energy = 3613 kcal/mol (3610 without restraints) Performing minimization step: 4065. Total energy = 3612 kcal/mol (3609 without restraints) Performing minimization step: 4066. Total energy = 3611 kcal/mol (3608 without restraints) Performing minimization step: 4067. Total energy = 3610 kcal/mol (3607 without restraints) Performing minimization step: 4068. Total energy = 3610 kcal/mol (3606 without restraints) Performing minimization step: 4069. Total energy = 3609 kcal/mol (3606 without restraints) Performing minimization step: 4070. Total energy = 3608 kcal/mol (3605 without restraints) Performing minimization step: 4071. Total energy = 3607 kcal/mol (3604 without restraints) Performing minimization step: 4072. Total energy = 3606 kcal/mol (3603 without restraints) Performing minimization step: 4073. Total energy = 3606 kcal/mol (3602 without restraints) Performing minimization step: 4074. Total energy = 3605 kcal/mol (3602 without restraints) Performing minimization step: 4075. Total energy = 3604 kcal/mol (3601 without restraints) Performing minimization step: 4076. Total energy = 3603 kcal/mol (3600 without restraints) Performing minimization step: 4077. Total energy = 3602 kcal/mol (3599 without restraints) Performing minimization step: 4078. Total energy = 3601 kcal/mol (3598 without restraints) Performing minimization step: 4079. Total energy = 3601 kcal/mol (3597 without restraints) Performing minimization step: 4080. Total energy = 3600 kcal/mol (3597 without restraints) Performing minimization step: 4081. Total energy = 3599 kcal/mol (3596 without restraints) Performing minimization step: 4082. Total energy = 3598 kcal/mol (3595 without restraints) Performing minimization step: 4083. Total energy = 3597 kcal/mol (3594 without restraints) Performing minimization step: 4084. Total energy = 3597 kcal/mol (3593 without restraints) Performing minimization step: 4085. Total energy = 3596 kcal/mol (3593 without restraints) Performing minimization step: 4086. Total energy = 3595 kcal/mol (3592 without restraints) Performing minimization step: 4087. Total energy = 3594 kcal/mol (3591 without restraints) Performing minimization step: 4088. Total energy = 3593 kcal/mol (3590 without restraints) Performing minimization step: 4089. Total energy = 3593 kcal/mol (3589 without restraints) Performing minimization step: 4090. Total energy = 3592 kcal/mol (3589 without restraints) Performing minimization step: 4091. Total energy = 3591 kcal/mol (3588 without restraints) Performing minimization step: 4092. Total energy = 3590 kcal/mol (3587 without restraints) Performing minimization step: 4093. Total energy = 3589 kcal/mol (3586 without restraints) Performing minimization step: 4094. Total energy = 3588 kcal/mol (3585 without restraints) Performing minimization step: 4095. Total energy = 3588 kcal/mol (3585 without restraints) Performing minimization step: 4096. Total energy = 3587 kcal/mol (3584 without restraints) Performing minimization step: 4097. Total energy = 3586 kcal/mol (3583 without restraints) Performing minimization step: 4098. Total energy = 3585 kcal/mol (3582 without restraints) Performing minimization step: 4099. Total energy = 3584 kcal/mol (3581 without restraints) Performing minimization step: 4100. Total energy = 3584 kcal/mol (3581 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 3583 kcal/mol (3580 without restraints) Performing minimization step: 4102. Total energy = 3582 kcal/mol (3579 without restraints) Performing minimization step: 4103. Total energy = 3581 kcal/mol (3578 without restraints) Performing minimization step: 4104. Total energy = 3580 kcal/mol (3577 without restraints) Performing minimization step: 4105. Total energy = 3580 kcal/mol (3577 without restraints) Performing minimization step: 4106. Total energy = 3579 kcal/mol (3576 without restraints) Performing minimization step: 4107. Total energy = 3578 kcal/mol (3575 without restraints) Performing minimization step: 4108. Total energy = 3577 kcal/mol (3574 without restraints) Performing minimization step: 4109. Total energy = 3576 kcal/mol (3573 without restraints) Performing minimization step: 4110. Total energy = 3576 kcal/mol (3573 without restraints) Performing minimization step: 4111. Total energy = 3575 kcal/mol (3572 without restraints) Performing minimization step: 4112. Total energy = 3574 kcal/mol (3571 without restraints) Performing minimization step: 4113. Total energy = 3573 kcal/mol (3570 without restraints) Performing minimization step: 4114. Total energy = 3572 kcal/mol (3569 without restraints) Performing minimization step: 4115. Total energy = 3572 kcal/mol (3569 without restraints) Performing minimization step: 4116. Total energy = 3571 kcal/mol (3568 without restraints) Performing minimization step: 4117. Total energy = 3570 kcal/mol (3567 without restraints) Performing minimization step: 4118. Total energy = 3569 kcal/mol (3566 without restraints) Performing minimization step: 4119. Total energy = 3568 kcal/mol (3565 without restraints) Performing minimization step: 4120. Total energy = 3568 kcal/mol (3565 without restraints) Performing minimization step: 4121. Total energy = 3567 kcal/mol (3564 without restraints) Performing minimization step: 4122. Total energy = 3566 kcal/mol (3563 without restraints) Performing minimization step: 4123. Total energy = 3565 kcal/mol (3562 without restraints) Performing minimization step: 4124. Total energy = 3565 kcal/mol (3561 without restraints) Performing minimization step: 4125. Total energy = 3564 kcal/mol (3561 without restraints) Performing minimization step: 4126. Total energy = 3563 kcal/mol (3560 without restraints) Performing minimization step: 4127. Total energy = 3562 kcal/mol (3559 without restraints) Performing minimization step: 4128. Total energy = 3561 kcal/mol (3558 without restraints) Performing minimization step: 4129. Total energy = 3561 kcal/mol (3557 without restraints) Performing minimization step: 4130. Total energy = 3560 kcal/mol (3557 without restraints) Performing minimization step: 4131. Total energy = 3559 kcal/mol (3556 without restraints) Performing minimization step: 4132. Total energy = 3558 kcal/mol (3555 without restraints) Performing minimization step: 4133. Total energy = 3557 kcal/mol (3554 without restraints) Performing minimization step: 4134. Total energy = 3557 kcal/mol (3554 without restraints) Performing minimization step: 4135. Total energy = 3556 kcal/mol (3553 without restraints) Performing minimization step: 4136. Total energy = 3555 kcal/mol (3552 without restraints) Performing minimization step: 4137. Total energy = 3554 kcal/mol (3551 without restraints) Performing minimization step: 4138. Total energy = 3553 kcal/mol (3550 without restraints) Performing minimization step: 4139. Total energy = 3553 kcal/mol (3550 without restraints) Performing minimization step: 4140. Total energy = 3552 kcal/mol (3549 without restraints) Performing minimization step: 4141. Total energy = 3551 kcal/mol (3548 without restraints) Performing minimization step: 4142. Total energy = 3550 kcal/mol (3547 without restraints) Performing minimization step: 4143. Total energy = 3550 kcal/mol (3546 without restraints) Performing minimization step: 4144. Total energy = 3549 kcal/mol (3546 without restraints) Performing minimization step: 4145. Total energy = 3548 kcal/mol (3545 without restraints) Performing minimization step: 4146. Total energy = 3547 kcal/mol (3544 without restraints) Performing minimization step: 4147. Total energy = 3546 kcal/mol (3543 without restraints) Performing minimization step: 4148. Total energy = 3546 kcal/mol (3543 without restraints) Performing minimization step: 4149. Total energy = 3545 kcal/mol (3542 without restraints) Performing minimization step: 4150. Total energy = 3544 kcal/mol (3541 without restraints) Performing minimization step: 4151. Total energy = 3543 kcal/mol (3540 without restraints) Performing minimization step: 4152. Total energy = 3543 kcal/mol (3539 without restraints) Performing minimization step: 4153. Total energy = 3542 kcal/mol (3539 without restraints) Performing minimization step: 4154. Total energy = 3541 kcal/mol (3538 without restraints) Performing minimization step: 4155. Total energy = 3540 kcal/mol (3537 without restraints) Performing minimization step: 4156. Total energy = 3539 kcal/mol (3536 without restraints) Performing minimization step: 4157. Total energy = 3539 kcal/mol (3536 without restraints) Performing minimization step: 4158. Total energy = 3538 kcal/mol (3535 without restraints) Performing minimization step: 4159. Total energy = 3537 kcal/mol (3534 without restraints) Performing minimization step: 4160. Total energy = 3536 kcal/mol (3533 without restraints) Performing minimization step: 4161. Total energy = 3536 kcal/mol (3533 without restraints) Performing minimization step: 4162. Total energy = 3535 kcal/mol (3532 without restraints) Performing minimization step: 4163. Total energy = 3534 kcal/mol (3531 without restraints) Performing minimization step: 4164. Total energy = 3533 kcal/mol (3530 without restraints) Performing minimization step: 4165. Total energy = 3532 kcal/mol (3529 without restraints) Performing minimization step: 4166. Total energy = 3532 kcal/mol (3529 without restraints) Performing minimization step: 4167. Total energy = 3531 kcal/mol (3528 without restraints) Performing minimization step: 4168. Total energy = 3530 kcal/mol (3527 without restraints) Performing minimization step: 4169. Total energy = 3529 kcal/mol (3526 without restraints) Performing minimization step: 4170. Total energy = 3529 kcal/mol (3526 without restraints) Performing minimization step: 4171. Total energy = 3528 kcal/mol (3525 without restraints) Performing minimization step: 4172. Total energy = 3527 kcal/mol (3524 without restraints) Performing minimization step: 4173. Total energy = 3526 kcal/mol (3523 without restraints) Performing minimization step: 4174. Total energy = 3526 kcal/mol (3523 without restraints) Performing minimization step: 4175. Total energy = 3525 kcal/mol (3522 without restraints) Performing minimization step: 4176. Total energy = 3524 kcal/mol (3521 without restraints) Performing minimization step: 4177. Total energy = 3523 kcal/mol (3520 without restraints) Performing minimization step: 4178. Total energy = 3523 kcal/mol (3519 without restraints) Performing minimization step: 4179. Total energy = 3522 kcal/mol (3519 without restraints) Performing minimization step: 4180. Total energy = 3521 kcal/mol (3518 without restraints) Performing minimization step: 4181. Total energy = 3520 kcal/mol (3517 without restraints) Performing minimization step: 4182. Total energy = 3519 kcal/mol (3516 without restraints) Performing minimization step: 4183. Total energy = 3519 kcal/mol (3516 without restraints) Performing minimization step: 4184. Total energy = 3518 kcal/mol (3515 without restraints) Performing minimization step: 4185. Total energy = 3517 kcal/mol (3514 without restraints) Performing minimization step: 4186. Total energy = 3516 kcal/mol (3513 without restraints) Performing minimization step: 4187. Total energy = 3516 kcal/mol (3513 without restraints) Performing minimization step: 4188. Total energy = 3515 kcal/mol (3512 without restraints) Performing minimization step: 4189. Total energy = 3514 kcal/mol (3511 without restraints) Performing minimization step: 4190. Total energy = 3513 kcal/mol (3510 without restraints) Performing minimization step: 4191. Total energy = 3513 kcal/mol (3510 without restraints) Performing minimization step: 4192. Total energy = 3512 kcal/mol (3509 without restraints) Performing minimization step: 4193. Total energy = 3511 kcal/mol (3508 without restraints) Performing minimization step: 4194. Total energy = 3510 kcal/mol (3507 without restraints) Performing minimization step: 4195. Total energy = 3510 kcal/mol (3507 without restraints) Performing minimization step: 4196. Total energy = 3509 kcal/mol (3506 without restraints) Performing minimization step: 4197. Total energy = 3508 kcal/mol (3505 without restraints) Performing minimization step: 4198. Total energy = 3507 kcal/mol (3504 without restraints) Performing minimization step: 4199. Total energy = 3507 kcal/mol (3504 without restraints) Performing minimization step: 4200. Total energy = 3506 kcal/mol (3503 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 3505 kcal/mol (3502 without restraints) Performing minimization step: 4202. Total energy = 3504 kcal/mol (3501 without restraints) Performing minimization step: 4203. Total energy = 3504 kcal/mol (3500 without restraints) Performing minimization step: 4204. Total energy = 3503 kcal/mol (3500 without restraints) Performing minimization step: 4205. Total energy = 3502 kcal/mol (3499 without restraints) Performing minimization step: 4206. Total energy = 3501 kcal/mol (3498 without restraints) Performing minimization step: 4207. Total energy = 3501 kcal/mol (3497 without restraints) Performing minimization step: 4208. Total energy = 3500 kcal/mol (3497 without restraints) Performing minimization step: 4209. Total energy = 3499 kcal/mol (3496 without restraints) Performing minimization step: 4210. Total energy = 3498 kcal/mol (3495 without restraints) Performing minimization step: 4211. Total energy = 3498 kcal/mol (3494 without restraints) Performing minimization step: 4212. Total energy = 3497 kcal/mol (3494 without restraints) Performing minimization step: 4213. Total energy = 3496 kcal/mol (3493 without restraints) Performing minimization step: 4214. Total energy = 3495 kcal/mol (3492 without restraints) Performing minimization step: 4215. Total energy = 3495 kcal/mol (3492 without restraints) Performing minimization step: 4216. Total energy = 3494 kcal/mol (3491 without restraints) Performing minimization step: 4217. Total energy = 3493 kcal/mol (3490 without restraints) Performing minimization step: 4218. Total energy = 3492 kcal/mol (3489 without restraints) Performing minimization step: 4219. Total energy = 3492 kcal/mol (3489 without restraints) Performing minimization step: 4220. Total energy = 3491 kcal/mol (3488 without restraints) Performing minimization step: 4221. Total energy = 3490 kcal/mol (3487 without restraints) Performing minimization step: 4222. Total energy = 3489 kcal/mol (3486 without restraints) Performing minimization step: 4223. Total energy = 3489 kcal/mol (3486 without restraints) Performing minimization step: 4224. Total energy = 3488 kcal/mol (3485 without restraints) Performing minimization step: 4225. Total energy = 3487 kcal/mol (3484 without restraints) Performing minimization step: 4226. Total energy = 3486 kcal/mol (3483 without restraints) Performing minimization step: 4227. Total energy = 3486 kcal/mol (3483 without restraints) Performing minimization step: 4228. Total energy = 3485 kcal/mol (3482 without restraints) Performing minimization step: 4229. Total energy = 3484 kcal/mol (3481 without restraints) Performing minimization step: 4230. Total energy = 3483 kcal/mol (3480 without restraints) Performing minimization step: 4231. Total energy = 3483 kcal/mol (3480 without restraints) Performing minimization step: 4232. Total energy = 3482 kcal/mol (3479 without restraints) Performing minimization step: 4233. Total energy = 3481 kcal/mol (3478 without restraints) Performing minimization step: 4234. Total energy = 3480 kcal/mol (3477 without restraints) Performing minimization step: 4235. Total energy = 3480 kcal/mol (3477 without restraints) Performing minimization step: 4236. Total energy = 3479 kcal/mol (3476 without restraints) Performing minimization step: 4237. Total energy = 3478 kcal/mol (3475 without restraints) Performing minimization step: 4238. Total energy = 3477 kcal/mol (3474 without restraints) Performing minimization step: 4239. Total energy = 3477 kcal/mol (3474 without restraints) Performing minimization step: 4240. Total energy = 3476 kcal/mol (3473 without restraints) Performing minimization step: 4241. Total energy = 3475 kcal/mol (3472 without restraints) Performing minimization step: 4242. Total energy = 3475 kcal/mol (3472 without restraints) Performing minimization step: 4243. Total energy = 3474 kcal/mol (3471 without restraints) Performing minimization step: 4244. Total energy = 3473 kcal/mol (3470 without restraints) Performing minimization step: 4245. Total energy = 3472 kcal/mol (3469 without restraints) Performing minimization step: 4246. Total energy = 3472 kcal/mol (3469 without restraints) Performing minimization step: 4247. Total energy = 3471 kcal/mol (3468 without restraints) Performing minimization step: 4248. Total energy = 3470 kcal/mol (3467 without restraints) Performing minimization step: 4249. Total energy = 3469 kcal/mol (3466 without restraints) Performing minimization step: 4250. Total energy = 3469 kcal/mol (3466 without restraints) Performing minimization step: 4251. Total energy = 3468 kcal/mol (3465 without restraints) Performing minimization step: 4252. Total energy = 3467 kcal/mol (3464 without restraints) Performing minimization step: 4253. Total energy = 3466 kcal/mol (3463 without restraints) Performing minimization step: 4254. Total energy = 3466 kcal/mol (3463 without restraints) Performing minimization step: 4255. Total energy = 3465 kcal/mol (3462 without restraints) Performing minimization step: 4256. Total energy = 3464 kcal/mol (3461 without restraints) Performing minimization step: 4257. Total energy = 3464 kcal/mol (3461 without restraints) Performing minimization step: 4258. Total energy = 3463 kcal/mol (3460 without restraints) Performing minimization step: 4259. Total energy = 3462 kcal/mol (3459 without restraints) Performing minimization step: 4260. Total energy = 3461 kcal/mol (3458 without restraints) Performing minimization step: 4261. Total energy = 3461 kcal/mol (3458 without restraints) Performing minimization step: 4262. Total energy = 3460 kcal/mol (3457 without restraints) Performing minimization step: 4263. Total energy = 3459 kcal/mol (3456 without restraints) Performing minimization step: 4264. Total energy = 3458 kcal/mol (3455 without restraints) Performing minimization step: 4265. Total energy = 3458 kcal/mol (3455 without restraints) Performing minimization step: 4266. Total energy = 3457 kcal/mol (3454 without restraints) Performing minimization step: 4267. Total energy = 3456 kcal/mol (3453 without restraints) Performing minimization step: 4268. Total energy = 3456 kcal/mol (3453 without restraints) Performing minimization step: 4269. Total energy = 3455 kcal/mol (3452 without restraints) Performing minimization step: 4270. Total energy = 3454 kcal/mol (3451 without restraints) Performing minimization step: 4271. Total energy = 3453 kcal/mol (3450 without restraints) Performing minimization step: 4272. Total energy = 3453 kcal/mol (3450 without restraints) Performing minimization step: 4273. Total energy = 3452 kcal/mol (3449 without restraints) Performing minimization step: 4274. Total energy = 3451 kcal/mol (3448 without restraints) Performing minimization step: 4275. Total energy = 3451 kcal/mol (3448 without restraints) Performing minimization step: 4276. Total energy = 3450 kcal/mol (3447 without restraints) Performing minimization step: 4277. Total energy = 3449 kcal/mol (3446 without restraints) Performing minimization step: 4278. Total energy = 3448 kcal/mol (3445 without restraints) Performing minimization step: 4279. Total energy = 3448 kcal/mol (3445 without restraints) Performing minimization step: 4280. Total energy = 3447 kcal/mol (3444 without restraints) Performing minimization step: 4281. Total energy = 3446 kcal/mol (3443 without restraints) Performing minimization step: 4282. Total energy = 3446 kcal/mol (3443 without restraints) Performing minimization step: 4283. Total energy = 3445 kcal/mol (3442 without restraints) Performing minimization step: 4284. Total energy = 3444 kcal/mol (3441 without restraints) Performing minimization step: 4285. Total energy = 3443 kcal/mol (3440 without restraints) Performing minimization step: 4286. Total energy = 3443 kcal/mol (3440 without restraints) Performing minimization step: 4287. Total energy = 3442 kcal/mol (3439 without restraints) Performing minimization step: 4288. Total energy = 3441 kcal/mol (3438 without restraints) Performing minimization step: 4289. Total energy = 3441 kcal/mol (3438 without restraints) Performing minimization step: 4290. Total energy = 3440 kcal/mol (3437 without restraints) Performing minimization step: 4291. Total energy = 3439 kcal/mol (3436 without restraints) Performing minimization step: 4292. Total energy = 3438 kcal/mol (3435 without restraints) Performing minimization step: 4293. Total energy = 3438 kcal/mol (3435 without restraints) Performing minimization step: 4294. Total energy = 3437 kcal/mol (3434 without restraints) Performing minimization step: 4295. Total energy = 3436 kcal/mol (3433 without restraints) Performing minimization step: 4296. Total energy = 3436 kcal/mol (3433 without restraints) Performing minimization step: 4297. Total energy = 3435 kcal/mol (3432 without restraints) Performing minimization step: 4298. Total energy = 3434 kcal/mol (3431 without restraints) Performing minimization step: 4299. Total energy = 3433 kcal/mol (3430 without restraints) Performing minimization step: 4300. Total energy = 3433 kcal/mol (3430 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 3432 kcal/mol (3429 without restraints) Performing minimization step: 4302. Total energy = 3431 kcal/mol (3428 without restraints) Performing minimization step: 4303. Total energy = 3431 kcal/mol (3428 without restraints) Performing minimization step: 4304. Total energy = 3430 kcal/mol (3427 without restraints) Performing minimization step: 4305. Total energy = 3429 kcal/mol (3426 without restraints) Performing minimization step: 4306. Total energy = 3428 kcal/mol (3425 without restraints) Performing minimization step: 4307. Total energy = 3428 kcal/mol (3425 without restraints) Performing minimization step: 4308. Total energy = 3427 kcal/mol (3424 without restraints) Performing minimization step: 4309. Total energy = 3426 kcal/mol (3423 without restraints) Performing minimization step: 4310. Total energy = 3426 kcal/mol (3423 without restraints) Performing minimization step: 4311. Total energy = 3425 kcal/mol (3422 without restraints) Performing minimization step: 4312. Total energy = 3424 kcal/mol (3421 without restraints) Performing minimization step: 4313. Total energy = 3424 kcal/mol (3421 without restraints) Performing minimization step: 4314. Total energy = 3423 kcal/mol (3420 without restraints) Performing minimization step: 4315. Total energy = 3422 kcal/mol (3419 without restraints) Performing minimization step: 4316. Total energy = 3421 kcal/mol (3418 without restraints) Performing minimization step: 4317. Total energy = 3421 kcal/mol (3418 without restraints) Performing minimization step: 4318. Total energy = 3420 kcal/mol (3417 without restraints) Performing minimization step: 4319. Total energy = 3419 kcal/mol (3416 without restraints) Performing minimization step: 4320. Total energy = 3419 kcal/mol (3416 without restraints) Performing minimization step: 4321. Total energy = 3418 kcal/mol (3415 without restraints) Performing minimization step: 4322. Total energy = 3417 kcal/mol (3414 without restraints) Performing minimization step: 4323. Total energy = 3417 kcal/mol (3414 without restraints) Performing minimization step: 4324. Total energy = 3416 kcal/mol (3413 without restraints) Performing minimization step: 4325. Total energy = 3415 kcal/mol (3412 without restraints) Performing minimization step: 4326. Total energy = 3414 kcal/mol (3411 without restraints) Performing minimization step: 4327. Total energy = 3414 kcal/mol (3411 without restraints) Performing minimization step: 4328. Total energy = 3413 kcal/mol (3410 without restraints) Performing minimization step: 4329. Total energy = 3412 kcal/mol (3409 without restraints) Performing minimization step: 4330. Total energy = 3412 kcal/mol (3409 without restraints) Performing minimization step: 4331. Total energy = 3411 kcal/mol (3408 without restraints) Performing minimization step: 4332. Total energy = 3410 kcal/mol (3407 without restraints) Performing minimization step: 4333. Total energy = 3410 kcal/mol (3407 without restraints) Performing minimization step: 4334. Total energy = 3409 kcal/mol (3406 without restraints) Performing minimization step: 4335. Total energy = 3408 kcal/mol (3405 without restraints) Performing minimization step: 4336. Total energy = 3407 kcal/mol (3405 without restraints) Performing minimization step: 4337. Total energy = 3407 kcal/mol (3404 without restraints) Performing minimization step: 4338. Total energy = 3406 kcal/mol (3403 without restraints) Performing minimization step: 4339. Total energy = 3405 kcal/mol (3402 without restraints) Performing minimization step: 4340. Total energy = 3405 kcal/mol (3402 without restraints) Performing minimization step: 4341. Total energy = 3404 kcal/mol (3401 without restraints) Performing minimization step: 4342. Total energy = 3403 kcal/mol (3400 without restraints) Performing minimization step: 4343. Total energy = 3403 kcal/mol (3400 without restraints) Performing minimization step: 4344. Total energy = 3402 kcal/mol (3399 without restraints) Performing minimization step: 4345. Total energy = 3401 kcal/mol (3398 without restraints) Performing minimization step: 4346. Total energy = 3401 kcal/mol (3398 without restraints) Performing minimization step: 4347. Total energy = 3400 kcal/mol (3397 without restraints) Performing minimization step: 4348. Total energy = 3399 kcal/mol (3396 without restraints) Performing minimization step: 4349. Total energy = 3399 kcal/mol (3396 without restraints) Performing minimization step: 4350. Total energy = 3398 kcal/mol (3395 without restraints) Performing minimization step: 4351. Total energy = 3397 kcal/mol (3394 without restraints) Performing minimization step: 4352. Total energy = 3396 kcal/mol (3394 without restraints) Performing minimization step: 4353. Total energy = 3396 kcal/mol (3393 without restraints) Performing minimization step: 4354. Total energy = 3395 kcal/mol (3392 without restraints) Performing minimization step: 4355. Total energy = 3394 kcal/mol (3391 without restraints) Performing minimization step: 4356. Total energy = 3394 kcal/mol (3391 without restraints) Performing minimization step: 4357. Total energy = 3393 kcal/mol (3390 without restraints) Performing minimization step: 4358. Total energy = 3392 kcal/mol (3389 without restraints) Performing minimization step: 4359. Total energy = 3392 kcal/mol (3389 without restraints) Performing minimization step: 4360. Total energy = 3391 kcal/mol (3388 without restraints) Performing minimization step: 4361. Total energy = 3390 kcal/mol (3387 without restraints) Performing minimization step: 4362. Total energy = 3390 kcal/mol (3387 without restraints) Performing minimization step: 4363. Total energy = 3389 kcal/mol (3386 without restraints) Performing minimization step: 4364. Total energy = 3388 kcal/mol (3385 without restraints) Performing minimization step: 4365. Total energy = 3388 kcal/mol (3385 without restraints) Performing minimization step: 4366. Total energy = 3387 kcal/mol (3384 without restraints) Performing minimization step: 4367. Total energy = 3386 kcal/mol (3383 without restraints) Performing minimization step: 4368. Total energy = 3386 kcal/mol (3383 without restraints) Performing minimization step: 4369. Total energy = 3385 kcal/mol (3382 without restraints) Performing minimization step: 4370. Total energy = 3384 kcal/mol (3381 without restraints) Performing minimization step: 4371. Total energy = 3384 kcal/mol (3381 without restraints) Performing minimization step: 4372. Total energy = 3383 kcal/mol (3380 without restraints) Performing minimization step: 4373. Total energy = 3382 kcal/mol (3379 without restraints) Performing minimization step: 4374. Total energy = 3382 kcal/mol (3379 without restraints) Performing minimization step: 4375. Total energy = 3381 kcal/mol (3378 without restraints) Performing minimization step: 4376. Total energy = 3380 kcal/mol (3377 without restraints) Performing minimization step: 4377. Total energy = 3379 kcal/mol (3377 without restraints) Performing minimization step: 4378. Total energy = 3379 kcal/mol (3376 without restraints) Performing minimization step: 4379. Total energy = 3378 kcal/mol (3375 without restraints) Performing minimization step: 4380. Total energy = 3377 kcal/mol (3375 without restraints) Performing minimization step: 4381. Total energy = 3377 kcal/mol (3374 without restraints) Performing minimization step: 4382. Total energy = 3376 kcal/mol (3373 without restraints) Performing minimization step: 4383. Total energy = 3375 kcal/mol (3373 without restraints) Performing minimization step: 4384. Total energy = 3375 kcal/mol (3372 without restraints) Performing minimization step: 4385. Total energy = 3374 kcal/mol (3371 without restraints) Performing minimization step: 4386. Total energy = 3373 kcal/mol (3371 without restraints) Performing minimization step: 4387. Total energy = 3373 kcal/mol (3370 without restraints) Performing minimization step: 4388. Total energy = 3372 kcal/mol (3369 without restraints) Performing minimization step: 4389. Total energy = 3371 kcal/mol (3369 without restraints) Performing minimization step: 4390. Total energy = 3371 kcal/mol (3368 without restraints) Performing minimization step: 4391. Total energy = 3370 kcal/mol (3367 without restraints) Performing minimization step: 4392. Total energy = 3369 kcal/mol (3367 without restraints) Performing minimization step: 4393. Total energy = 3369 kcal/mol (3366 without restraints) Performing minimization step: 4394. Total energy = 3368 kcal/mol (3365 without restraints) Performing minimization step: 4395. Total energy = 3367 kcal/mol (3365 without restraints) Performing minimization step: 4396. Total energy = 3367 kcal/mol (3364 without restraints) Performing minimization step: 4397. Total energy = 3366 kcal/mol (3363 without restraints) Performing minimization step: 4398. Total energy = 3365 kcal/mol (3363 without restraints) Performing minimization step: 4399. Total energy = 3365 kcal/mol (3362 without restraints) Performing minimization step: 4400. Total energy = 3364 kcal/mol (3361 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 3363 kcal/mol (3361 without restraints) Performing minimization step: 4402. Total energy = 3363 kcal/mol (3360 without restraints) Performing minimization step: 4403. Total energy = 3362 kcal/mol (3359 without restraints) Performing minimization step: 4404. Total energy = 3361 kcal/mol (3359 without restraints) Performing minimization step: 4405. Total energy = 3361 kcal/mol (3358 without restraints) Performing minimization step: 4406. Total energy = 3360 kcal/mol (3357 without restraints) Performing minimization step: 4407. Total energy = 3359 kcal/mol (3357 without restraints) Performing minimization step: 4408. Total energy = 3359 kcal/mol (3356 without restraints) Performing minimization step: 4409. Total energy = 3358 kcal/mol (3355 without restraints) Performing minimization step: 4410. Total energy = 3357 kcal/mol (3355 without restraints) Performing minimization step: 4411. Total energy = 3357 kcal/mol (3354 without restraints) Performing minimization step: 4412. Total energy = 3356 kcal/mol (3353 without restraints) Performing minimization step: 4413. Total energy = 3355 kcal/mol (3353 without restraints) Performing minimization step: 4414. Total energy = 3355 kcal/mol (3352 without restraints) Performing minimization step: 4415. Total energy = 3354 kcal/mol (3351 without restraints) Performing minimization step: 4416. Total energy = 3354 kcal/mol (3351 without restraints) Performing minimization step: 4417. Total energy = 3353 kcal/mol (3350 without restraints) Performing minimization step: 4418. Total energy = 3352 kcal/mol (3349 without restraints) Performing minimization step: 4419. Total energy = 3352 kcal/mol (3349 without restraints) Performing minimization step: 4420. Total energy = 3351 kcal/mol (3348 without restraints) Performing minimization step: 4421. Total energy = 3350 kcal/mol (3347 without restraints) Performing minimization step: 4422. Total energy = 3350 kcal/mol (3347 without restraints) Performing minimization step: 4423. Total energy = 3349 kcal/mol (3346 without restraints) Performing minimization step: 4424. Total energy = 3348 kcal/mol (3345 without restraints) Performing minimization step: 4425. Total energy = 3348 kcal/mol (3345 without restraints) Performing minimization step: 4426. Total energy = 3347 kcal/mol (3344 without restraints) Performing minimization step: 4427. Total energy = 3346 kcal/mol (3343 without restraints) Performing minimization step: 4428. Total energy = 3346 kcal/mol (3343 without restraints) Performing minimization step: 4429. Total energy = 3345 kcal/mol (3342 without restraints) Performing minimization step: 4430. Total energy = 3344 kcal/mol (3341 without restraints) Performing minimization step: 4431. Total energy = 3344 kcal/mol (3341 without restraints) Performing minimization step: 4432. Total energy = 3343 kcal/mol (3340 without restraints) Performing minimization step: 4433. Total energy = 3342 kcal/mol (3340 without restraints) Performing minimization step: 4434. Total energy = 3342 kcal/mol (3339 without restraints) Performing minimization step: 4435. Total energy = 3341 kcal/mol (3338 without restraints) Performing minimization step: 4436. Total energy = 3340 kcal/mol (3338 without restraints) Performing minimization step: 4437. Total energy = 3340 kcal/mol (3337 without restraints) Performing minimization step: 4438. Total energy = 3339 kcal/mol (3336 without restraints) Performing minimization step: 4439. Total energy = 3339 kcal/mol (3336 without restraints) Performing minimization step: 4440. Total energy = 3338 kcal/mol (3335 without restraints) Performing minimization step: 4441. Total energy = 3337 kcal/mol (3334 without restraints) Performing minimization step: 4442. Total energy = 3337 kcal/mol (3334 without restraints) Performing minimization step: 4443. Total energy = 3336 kcal/mol (3333 without restraints) Performing minimization step: 4444. Total energy = 3335 kcal/mol (3332 without restraints) Performing minimization step: 4445. Total energy = 3335 kcal/mol (3332 without restraints) Performing minimization step: 4446. Total energy = 3334 kcal/mol (3331 without restraints) Performing minimization step: 4447. Total energy = 3333 kcal/mol (3330 without restraints) Performing minimization step: 4448. Total energy = 3333 kcal/mol (3330 without restraints) Performing minimization step: 4449. Total energy = 3332 kcal/mol (3329 without restraints) Performing minimization step: 4450. Total energy = 3331 kcal/mol (3329 without restraints) Performing minimization step: 4451. Total energy = 3331 kcal/mol (3328 without restraints) Performing minimization step: 4452. Total energy = 3330 kcal/mol (3327 without restraints) Performing minimization step: 4453. Total energy = 3329 kcal/mol (3327 without restraints) Performing minimization step: 4454. Total energy = 3329 kcal/mol (3326 without restraints) Performing minimization step: 4455. Total energy = 3328 kcal/mol (3325 without restraints) Performing minimization step: 4456. Total energy = 3328 kcal/mol (3325 without restraints) Performing minimization step: 4457. Total energy = 3327 kcal/mol (3324 without restraints) Performing minimization step: 4458. Total energy = 3326 kcal/mol (3323 without restraints) Performing minimization step: 4459. Total energy = 3326 kcal/mol (3323 without restraints) Performing minimization step: 4460. Total energy = 3325 kcal/mol (3322 without restraints) Performing minimization step: 4461. Total energy = 3324 kcal/mol (3322 without restraints) Performing minimization step: 4462. Total energy = 3324 kcal/mol (3321 without restraints) Performing minimization step: 4463. Total energy = 3323 kcal/mol (3320 without restraints) Performing minimization step: 4464. Total energy = 3322 kcal/mol (3320 without restraints) Performing minimization step: 4465. Total energy = 3322 kcal/mol (3319 without restraints) Performing minimization step: 4466. Total energy = 3321 kcal/mol (3318 without restraints) Performing minimization step: 4467. Total energy = 3321 kcal/mol (3318 without restraints) Performing minimization step: 4468. Total energy = 3320 kcal/mol (3317 without restraints) Performing minimization step: 4469. Total energy = 3319 kcal/mol (3316 without restraints) Performing minimization step: 4470. Total energy = 3319 kcal/mol (3316 without restraints) Performing minimization step: 4471. Total energy = 3318 kcal/mol (3315 without restraints) Performing minimization step: 4472. Total energy = 3317 kcal/mol (3315 without restraints) Performing minimization step: 4473. Total energy = 3317 kcal/mol (3314 without restraints) Performing minimization step: 4474. Total energy = 3316 kcal/mol (3313 without restraints) Performing minimization step: 4475. Total energy = 3315 kcal/mol (3313 without restraints) Performing minimization step: 4476. Total energy = 3315 kcal/mol (3312 without restraints) Performing minimization step: 4477. Total energy = 3314 kcal/mol (3311 without restraints) Performing minimization step: 4478. Total energy = 3314 kcal/mol (3311 without restraints) Performing minimization step: 4479. Total energy = 3313 kcal/mol (3310 without restraints) Performing minimization step: 4480. Total energy = 3312 kcal/mol (3309 without restraints) Performing minimization step: 4481. Total energy = 3312 kcal/mol (3309 without restraints) Performing minimization step: 4482. Total energy = 3311 kcal/mol (3308 without restraints) Performing minimization step: 4483. Total energy = 3310 kcal/mol (3308 without restraints) Performing minimization step: 4484. Total energy = 3310 kcal/mol (3307 without restraints) Performing minimization step: 4485. Total energy = 3309 kcal/mol (3306 without restraints) Performing minimization step: 4486. Total energy = 3309 kcal/mol (3306 without restraints) Performing minimization step: 4487. Total energy = 3308 kcal/mol (3305 without restraints) Performing minimization step: 4488. Total energy = 3307 kcal/mol (3304 without restraints) Performing minimization step: 4489. Total energy = 3307 kcal/mol (3304 without restraints) Performing minimization step: 4490. Total energy = 3306 kcal/mol (3303 without restraints) Performing minimization step: 4491. Total energy = 3305 kcal/mol (3303 without restraints) Performing minimization step: 4492. Total energy = 3305 kcal/mol (3302 without restraints) Performing minimization step: 4493. Total energy = 3304 kcal/mol (3301 without restraints) Performing minimization step: 4494. Total energy = 3304 kcal/mol (3301 without restraints) Performing minimization step: 4495. Total energy = 3303 kcal/mol (3300 without restraints) Performing minimization step: 4496. Total energy = 3302 kcal/mol (3299 without restraints) Performing minimization step: 4497. Total energy = 3302 kcal/mol (3299 without restraints) Performing minimization step: 4498. Total energy = 3301 kcal/mol (3298 without restraints) Performing minimization step: 4499. Total energy = 3300 kcal/mol (3298 without restraints) Performing minimization step: 4500. Total energy = 3300 kcal/mol (3297 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 3299 kcal/mol (3296 without restraints) Performing minimization step: 4502. Total energy = 3299 kcal/mol (3296 without restraints) Performing minimization step: 4503. Total energy = 3298 kcal/mol (3295 without restraints) Performing minimization step: 4504. Total energy = 3297 kcal/mol (3294 without restraints) Performing minimization step: 4505. Total energy = 3297 kcal/mol (3294 without restraints) Performing minimization step: 4506. Total energy = 3296 kcal/mol (3293 without restraints) Performing minimization step: 4507. Total energy = 3295 kcal/mol (3293 without restraints) Performing minimization step: 4508. Total energy = 3295 kcal/mol (3292 without restraints) Performing minimization step: 4509. Total energy = 3294 kcal/mol (3291 without restraints) Performing minimization step: 4510. Total energy = 3294 kcal/mol (3291 without restraints) Performing minimization step: 4511. Total energy = 3293 kcal/mol (3290 without restraints) Performing minimization step: 4512. Total energy = 3292 kcal/mol (3290 without restraints) Performing minimization step: 4513. Total energy = 3292 kcal/mol (3289 without restraints) Performing minimization step: 4514. Total energy = 3291 kcal/mol (3288 without restraints) Performing minimization step: 4515. Total energy = 3290 kcal/mol (3288 without restraints) Performing minimization step: 4516. Total energy = 3290 kcal/mol (3287 without restraints) Performing minimization step: 4517. Total energy = 3289 kcal/mol (3286 without restraints) Performing minimization step: 4518. Total energy = 3289 kcal/mol (3286 without restraints) Performing minimization step: 4519. Total energy = 3288 kcal/mol (3285 without restraints) Performing minimization step: 4520. Total energy = 3287 kcal/mol (3285 without restraints) Performing minimization step: 4521. Total energy = 3287 kcal/mol (3284 without restraints) Performing minimization step: 4522. Total energy = 3286 kcal/mol (3283 without restraints) Performing minimization step: 4523. Total energy = 3286 kcal/mol (3283 without restraints) Performing minimization step: 4524. Total energy = 3285 kcal/mol (3282 without restraints) Performing minimization step: 4525. Total energy = 3284 kcal/mol (3282 without restraints) Performing minimization step: 4526. Total energy = 3284 kcal/mol (3281 without restraints) Performing minimization step: 4527. Total energy = 3283 kcal/mol (3280 without restraints) Performing minimization step: 4528. Total energy = 3283 kcal/mol (3280 without restraints) Performing minimization step: 4529. Total energy = 3282 kcal/mol (3279 without restraints) Performing minimization step: 4530. Total energy = 3281 kcal/mol (3278 without restraints) Performing minimization step: 4531. Total energy = 3281 kcal/mol (3278 without restraints) Performing minimization step: 4532. Total energy = 3280 kcal/mol (3277 without restraints) Performing minimization step: 4533. Total energy = 3279 kcal/mol (3277 without restraints) Performing minimization step: 4534. Total energy = 3279 kcal/mol (3276 without restraints) Performing minimization step: 4535. Total energy = 3278 kcal/mol (3275 without restraints) Performing minimization step: 4536. Total energy = 3278 kcal/mol (3275 without restraints) Performing minimization step: 4537. Total energy = 3277 kcal/mol (3274 without restraints) Performing minimization step: 4538. Total energy = 3276 kcal/mol (3274 without restraints) Performing minimization step: 4539. Total energy = 3276 kcal/mol (3273 without restraints) Performing minimization step: 4540. Total energy = 3275 kcal/mol (3272 without restraints) Performing minimization step: 4541. Total energy = 3275 kcal/mol (3272 without restraints) Performing minimization step: 4542. Total energy = 3274 kcal/mol (3271 without restraints) Performing minimization step: 4543. Total energy = 3273 kcal/mol (3271 without restraints) Performing minimization step: 4544. Total energy = 3273 kcal/mol (3270 without restraints) Performing minimization step: 4545. Total energy = 3272 kcal/mol (3269 without restraints) Performing minimization step: 4546. Total energy = 3272 kcal/mol (3269 without restraints) Performing minimization step: 4547. Total energy = 3271 kcal/mol (3268 without restraints) Performing minimization step: 4548. Total energy = 3270 kcal/mol (3268 without restraints) Performing minimization step: 4549. Total energy = 3270 kcal/mol (3267 without restraints) Performing minimization step: 4550. Total energy = 3269 kcal/mol (3266 without restraints) Performing minimization step: 4551. Total energy = 3269 kcal/mol (3266 without restraints) Performing minimization step: 4552. Total energy = 3268 kcal/mol (3265 without restraints) Performing minimization step: 4553. Total energy = 3267 kcal/mol (3265 without restraints) Performing minimization step: 4554. Total energy = 3267 kcal/mol (3264 without restraints) Performing minimization step: 4555. Total energy = 3266 kcal/mol (3263 without restraints) Performing minimization step: 4556. Total energy = 3266 kcal/mol (3263 without restraints) Performing minimization step: 4557. Total energy = 3265 kcal/mol (3262 without restraints) Performing minimization step: 4558. Total energy = 3264 kcal/mol (3262 without restraints) Performing minimization step: 4559. Total energy = 3264 kcal/mol (3261 without restraints) Performing minimization step: 4560. Total energy = 3263 kcal/mol (3260 without restraints) Performing minimization step: 4561. Total energy = 3263 kcal/mol (3260 without restraints) Performing minimization step: 4562. Total energy = 3262 kcal/mol (3259 without restraints) Performing minimization step: 4563. Total energy = 3261 kcal/mol (3259 without restraints) Performing minimization step: 4564. Total energy = 3261 kcal/mol (3258 without restraints) Performing minimization step: 4565. Total energy = 3260 kcal/mol (3257 without restraints) Performing minimization step: 4566. Total energy = 3260 kcal/mol (3257 without restraints) Performing minimization step: 4567. Total energy = 3259 kcal/mol (3256 without restraints) Performing minimization step: 4568. Total energy = 3258 kcal/mol (3256 without restraints) Performing minimization step: 4569. Total energy = 3258 kcal/mol (3255 without restraints) Performing minimization step: 4570. Total energy = 3257 kcal/mol (3254 without restraints) Performing minimization step: 4571. Total energy = 3257 kcal/mol (3254 without restraints) Performing minimization step: 4572. Total energy = 3256 kcal/mol (3253 without restraints) Performing minimization step: 4573. Total energy = 3255 kcal/mol (3253 without restraints) Performing minimization step: 4574. Total energy = 3255 kcal/mol (3252 without restraints) Performing minimization step: 4575. Total energy = 3254 kcal/mol (3251 without restraints) Performing minimization step: 4576. Total energy = 3254 kcal/mol (3251 without restraints) Performing minimization step: 4577. Total energy = 3253 kcal/mol (3250 without restraints) Performing minimization step: 4578. Total energy = 3252 kcal/mol (3250 without restraints) Performing minimization step: 4579. Total energy = 3252 kcal/mol (3249 without restraints) Performing minimization step: 4580. Total energy = 3251 kcal/mol (3249 without restraints) Performing minimization step: 4581. Total energy = 3251 kcal/mol (3248 without restraints) Performing minimization step: 4582. Total energy = 3250 kcal/mol (3247 without restraints) Performing minimization step: 4583. Total energy = 3250 kcal/mol (3247 without restraints) Performing minimization step: 4584. Total energy = 3249 kcal/mol (3246 without restraints) Performing minimization step: 4585. Total energy = 3248 kcal/mol (3246 without restraints) Performing minimization step: 4586. Total energy = 3248 kcal/mol (3245 without restraints) Performing minimization step: 4587. Total energy = 3247 kcal/mol (3244 without restraints) Performing minimization step: 4588. Total energy = 3247 kcal/mol (3244 without restraints) Performing minimization step: 4589. Total energy = 3246 kcal/mol (3243 without restraints) Performing minimization step: 4590. Total energy = 3245 kcal/mol (3243 without restraints) Performing minimization step: 4591. Total energy = 3245 kcal/mol (3242 without restraints) Performing minimization step: 4592. Total energy = 3244 kcal/mol (3241 without restraints) Performing minimization step: 4593. Total energy = 3244 kcal/mol (3241 without restraints) Performing minimization step: 4594. Total energy = 3243 kcal/mol (3240 without restraints) Performing minimization step: 4595. Total energy = 3242 kcal/mol (3240 without restraints) Performing minimization step: 4596. Total energy = 3242 kcal/mol (3239 without restraints) Performing minimization step: 4597. Total energy = 3241 kcal/mol (3239 without restraints) Performing minimization step: 4598. Total energy = 3241 kcal/mol (3238 without restraints) Performing minimization step: 4599. Total energy = 3240 kcal/mol (3237 without restraints) Performing minimization step: 4600. Total energy = 3240 kcal/mol (3237 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 3239 kcal/mol (3236 without restraints) Performing minimization step: 4602. Total energy = 3238 kcal/mol (3236 without restraints) Performing minimization step: 4603. Total energy = 3238 kcal/mol (3235 without restraints) Performing minimization step: 4604. Total energy = 3237 kcal/mol (3234 without restraints) Performing minimization step: 4605. Total energy = 3237 kcal/mol (3234 without restraints) Performing minimization step: 4606. Total energy = 3236 kcal/mol (3233 without restraints) Performing minimization step: 4607. Total energy = 3236 kcal/mol (3233 without restraints) Performing minimization step: 4608. Total energy = 3235 kcal/mol (3232 without restraints) Performing minimization step: 4609. Total energy = 3234 kcal/mol (3232 without restraints) Performing minimization step: 4610. Total energy = 3234 kcal/mol (3231 without restraints) Performing minimization step: 4611. Total energy = 3233 kcal/mol (3230 without restraints) Performing minimization step: 4612. Total energy = 3233 kcal/mol (3230 without restraints) Performing minimization step: 4613. Total energy = 3232 kcal/mol (3229 without restraints) Performing minimization step: 4614. Total energy = 3231 kcal/mol (3229 without restraints) Performing minimization step: 4615. Total energy = 3231 kcal/mol (3228 without restraints) Performing minimization step: 4616. Total energy = 3230 kcal/mol (3228 without restraints) Performing minimization step: 4617. Total energy = 3230 kcal/mol (3227 without restraints) Performing minimization step: 4618. Total energy = 3229 kcal/mol (3226 without restraints) Performing minimization step: 4619. Total energy = 3229 kcal/mol (3226 without restraints) Performing minimization step: 4620. Total energy = 3228 kcal/mol (3225 without restraints) Performing minimization step: 4621. Total energy = 3227 kcal/mol (3225 without restraints) Performing minimization step: 4622. Total energy = 3227 kcal/mol (3224 without restraints) Performing minimization step: 4623. Total energy = 3226 kcal/mol (3224 without restraints) Performing minimization step: 4624. Total energy = 3226 kcal/mol (3223 without restraints) Performing minimization step: 4625. Total energy = 3225 kcal/mol (3222 without restraints) Performing minimization step: 4626. Total energy = 3225 kcal/mol (3222 without restraints) Performing minimization step: 4627. Total energy = 3224 kcal/mol (3221 without restraints) Performing minimization step: 4628. Total energy = 3223 kcal/mol (3221 without restraints) Performing minimization step: 4629. Total energy = 3223 kcal/mol (3220 without restraints) Performing minimization step: 4630. Total energy = 3222 kcal/mol (3220 without restraints) Performing minimization step: 4631. Total energy = 3222 kcal/mol (3219 without restraints) Performing minimization step: 4632. Total energy = 3221 kcal/mol (3218 without restraints) Performing minimization step: 4633. Total energy = 3221 kcal/mol (3218 without restraints) Performing minimization step: 4634. Total energy = 3220 kcal/mol (3217 without restraints) Performing minimization step: 4635. Total energy = 3219 kcal/mol (3217 without restraints) Performing minimization step: 4636. Total energy = 3219 kcal/mol (3216 without restraints) Performing minimization step: 4637. Total energy = 3218 kcal/mol (3216 without restraints) Performing minimization step: 4638. Total energy = 3218 kcal/mol (3215 without restraints) Performing minimization step: 4639. Total energy = 3217 kcal/mol (3214 without restraints) Performing minimization step: 4640. Total energy = 3217 kcal/mol (3214 without restraints) Performing minimization step: 4641. Total energy = 3216 kcal/mol (3213 without restraints) Performing minimization step: 4642. Total energy = 3215 kcal/mol (3213 without restraints) Performing minimization step: 4643. Total energy = 3215 kcal/mol (3212 without restraints) Performing minimization step: 4644. Total energy = 3214 kcal/mol (3212 without restraints) Performing minimization step: 4645. Total energy = 3214 kcal/mol (3211 without restraints) Performing minimization step: 4646. Total energy = 3213 kcal/mol (3210 without restraints) Performing minimization step: 4647. Total energy = 3213 kcal/mol (3210 without restraints) Performing minimization step: 4648. Total energy = 3212 kcal/mol (3209 without restraints) Performing minimization step: 4649. Total energy = 3212 kcal/mol (3209 without restraints) Performing minimization step: 4650. Total energy = 3211 kcal/mol (3208 without restraints) Performing minimization step: 4651. Total energy = 3210 kcal/mol (3208 without restraints) Performing minimization step: 4652. Total energy = 3210 kcal/mol (3207 without restraints) Performing minimization step: 4653. Total energy = 3209 kcal/mol (3207 without restraints) Performing minimization step: 4654. Total energy = 3209 kcal/mol (3206 without restraints) Performing minimization step: 4655. Total energy = 3208 kcal/mol (3205 without restraints) Performing minimization step: 4656. Total energy = 3208 kcal/mol (3205 without restraints) Performing minimization step: 4657. Total energy = 3207 kcal/mol (3204 without restraints) Performing minimization step: 4658. Total energy = 3206 kcal/mol (3204 without restraints) Performing minimization step: 4659. Total energy = 3206 kcal/mol (3203 without restraints) Performing minimization step: 4660. Total energy = 3205 kcal/mol (3203 without restraints) Performing minimization step: 4661. Total energy = 3205 kcal/mol (3202 without restraints) Performing minimization step: 4662. Total energy = 3204 kcal/mol (3201 without restraints) Performing minimization step: 4663. Total energy = 3204 kcal/mol (3201 without restraints) Performing minimization step: 4664. Total energy = 3203 kcal/mol (3200 without restraints) Performing minimization step: 4665. Total energy = 3203 kcal/mol (3200 without restraints) Performing minimization step: 4666. Total energy = 3202 kcal/mol (3199 without restraints) Performing minimization step: 4667. Total energy = 3201 kcal/mol (3199 without restraints) Performing minimization step: 4668. Total energy = 3201 kcal/mol (3198 without restraints) Performing minimization step: 4669. Total energy = 3200 kcal/mol (3198 without restraints) Performing minimization step: 4670. Total energy = 3200 kcal/mol (3197 without restraints) Performing minimization step: 4671. Total energy = 3199 kcal/mol (3196 without restraints) Performing minimization step: 4672. Total energy = 3199 kcal/mol (3196 without restraints) Performing minimization step: 4673. Total energy = 3198 kcal/mol (3195 without restraints) Performing minimization step: 4674. Total energy = 3198 kcal/mol (3195 without restraints) Performing minimization step: 4675. Total energy = 3197 kcal/mol (3194 without restraints) Performing minimization step: 4676. Total energy = 3196 kcal/mol (3194 without restraints) Performing minimization step: 4677. Total energy = 3196 kcal/mol (3193 without restraints) Performing minimization step: 4678. Total energy = 3195 kcal/mol (3193 without restraints) Performing minimization step: 4679. Total energy = 3195 kcal/mol (3192 without restraints) Performing minimization step: 4680. Total energy = 3194 kcal/mol (3192 without restraints) Performing minimization step: 4681. Total energy = 3194 kcal/mol (3191 without restraints) Performing minimization step: 4682. Total energy = 3193 kcal/mol (3190 without restraints) Performing minimization step: 4683. Total energy = 3193 kcal/mol (3190 without restraints) Performing minimization step: 4684. Total energy = 3192 kcal/mol (3189 without restraints) Performing minimization step: 4685. Total energy = 3191 kcal/mol (3189 without restraints) Performing minimization step: 4686. Total energy = 3191 kcal/mol (3188 without restraints) Performing minimization step: 4687. Total energy = 3190 kcal/mol (3188 without restraints) Performing minimization step: 4688. Total energy = 3190 kcal/mol (3187 without restraints) Performing minimization step: 4689. Total energy = 3189 kcal/mol (3187 without restraints) Performing minimization step: 4690. Total energy = 3189 kcal/mol (3186 without restraints) Performing minimization step: 4691. Total energy = 3188 kcal/mol (3185 without restraints) Performing minimization step: 4692. Total energy = 3188 kcal/mol (3185 without restraints) Performing minimization step: 4693. Total energy = 3187 kcal/mol (3184 without restraints) Performing minimization step: 4694. Total energy = 3187 kcal/mol (3184 without restraints) Performing minimization step: 4695. Total energy = 3186 kcal/mol (3183 without restraints) Performing minimization step: 4696. Total energy = 3185 kcal/mol (3183 without restraints) Performing minimization step: 4697. Total energy = 3185 kcal/mol (3182 without restraints) Performing minimization step: 4698. Total energy = 3184 kcal/mol (3182 without restraints) Performing minimization step: 4699. Total energy = 3184 kcal/mol (3181 without restraints) Performing minimization step: 4700. Total energy = 3183 kcal/mol (3181 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 3183 kcal/mol (3180 without restraints) Performing minimization step: 4702. Total energy = 3182 kcal/mol (3179 without restraints) Performing minimization step: 4703. Total energy = 3182 kcal/mol (3179 without restraints) Performing minimization step: 4704. Total energy = 3181 kcal/mol (3178 without restraints) Performing minimization step: 4705. Total energy = 3181 kcal/mol (3178 without restraints) Performing minimization step: 4706. Total energy = 3180 kcal/mol (3177 without restraints) Performing minimization step: 4707. Total energy = 3179 kcal/mol (3177 without restraints) Performing minimization step: 4708. Total energy = 3179 kcal/mol (3176 without restraints) Performing minimization step: 4709. Total energy = 3178 kcal/mol (3176 without restraints) Performing minimization step: 4710. Total energy = 3178 kcal/mol (3175 without restraints) Performing minimization step: 4711. Total energy = 3177 kcal/mol (3175 without restraints) Performing minimization step: 4712. Total energy = 3177 kcal/mol (3174 without restraints) Performing minimization step: 4713. Total energy = 3176 kcal/mol (3174 without restraints) Performing minimization step: 4714. Total energy = 3176 kcal/mol (3173 without restraints) Performing minimization step: 4715. Total energy = 3175 kcal/mol (3172 without restraints) Performing minimization step: 4716. Total energy = 3175 kcal/mol (3172 without restraints) Performing minimization step: 4717. Total energy = 3174 kcal/mol (3171 without restraints) Performing minimization step: 4718. Total energy = 3174 kcal/mol (3171 without restraints) Performing minimization step: 4719. Total energy = 3173 kcal/mol (3170 without restraints) Performing minimization step: 4720. Total energy = 3172 kcal/mol (3170 without restraints) Performing minimization step: 4721. Total energy = 3172 kcal/mol (3169 without restraints) Performing minimization step: 4722. Total energy = 3171 kcal/mol (3169 without restraints) Performing minimization step: 4723. Total energy = 3171 kcal/mol (3168 without restraints) Performing minimization step: 4724. Total energy = 3170 kcal/mol (3168 without restraints) Performing minimization step: 4725. Total energy = 3170 kcal/mol (3167 without restraints) Performing minimization step: 4726. Total energy = 3169 kcal/mol (3167 without restraints) Performing minimization step: 4727. Total energy = 3169 kcal/mol (3166 without restraints) Performing minimization step: 4728. Total energy = 3168 kcal/mol (3165 without restraints) Performing minimization step: 4729. Total energy = 3168 kcal/mol (3165 without restraints) Performing minimization step: 4730. Total energy = 3167 kcal/mol (3164 without restraints) Performing minimization step: 4731. Total energy = 3167 kcal/mol (3164 without restraints) Performing minimization step: 4732. Total energy = 3166 kcal/mol (3163 without restraints) Performing minimization step: 4733. Total energy = 3165 kcal/mol (3163 without restraints) Performing minimization step: 4734. Total energy = 3165 kcal/mol (3162 without restraints) Performing minimization step: 4735. Total energy = 3164 kcal/mol (3162 without restraints) Performing minimization step: 4736. Total energy = 3164 kcal/mol (3161 without restraints) Performing minimization step: 4737. Total energy = 3163 kcal/mol (3161 without restraints) Performing minimization step: 4738. Total energy = 3163 kcal/mol (3160 without restraints) Performing minimization step: 4739. Total energy = 3162 kcal/mol (3160 without restraints) Performing minimization step: 4740. Total energy = 3162 kcal/mol (3159 without restraints) Performing minimization step: 4741. Total energy = 3161 kcal/mol (3159 without restraints) Performing minimization step: 4742. Total energy = 3161 kcal/mol (3158 without restraints) Performing minimization step: 4743. Total energy = 3160 kcal/mol (3158 without restraints) Performing minimization step: 4744. Total energy = 3160 kcal/mol (3157 without restraints) Performing minimization step: 4745. Total energy = 3159 kcal/mol (3156 without restraints) Performing minimization step: 4746. Total energy = 3159 kcal/mol (3156 without restraints) Performing minimization step: 4747. Total energy = 3158 kcal/mol (3155 without restraints) Performing minimization step: 4748. Total energy = 3158 kcal/mol (3155 without restraints) Performing minimization step: 4749. Total energy = 3157 kcal/mol (3154 without restraints) Performing minimization step: 4750. Total energy = 3156 kcal/mol (3154 without restraints) Performing minimization step: 4751. Total energy = 3156 kcal/mol (3153 without restraints) Performing minimization step: 4752. Total energy = 3155 kcal/mol (3153 without restraints) Performing minimization step: 4753. Total energy = 3155 kcal/mol (3152 without restraints) Performing minimization step: 4754. Total energy = 3154 kcal/mol (3152 without restraints) Performing minimization step: 4755. Total energy = 3154 kcal/mol (3151 without restraints) Performing minimization step: 4756. Total energy = 3153 kcal/mol (3151 without restraints) Performing minimization step: 4757. Total energy = 3153 kcal/mol (3150 without restraints) Performing minimization step: 4758. Total energy = 3152 kcal/mol (3150 without restraints) Performing minimization step: 4759. Total energy = 3152 kcal/mol (3149 without restraints) Performing minimization step: 4760. Total energy = 3151 kcal/mol (3149 without restraints) Performing minimization step: 4761. Total energy = 3151 kcal/mol (3148 without restraints) Performing minimization step: 4762. Total energy = 3150 kcal/mol (3148 without restraints) Performing minimization step: 4763. Total energy = 3150 kcal/mol (3147 without restraints) Performing minimization step: 4764. Total energy = 3149 kcal/mol (3146 without restraints) Performing minimization step: 4765. Total energy = 3149 kcal/mol (3146 without restraints) Performing minimization step: 4766. Total energy = 3148 kcal/mol (3145 without restraints) Performing minimization step: 4767. Total energy = 3148 kcal/mol (3145 without restraints) Performing minimization step: 4768. Total energy = 3147 kcal/mol (3144 without restraints) Performing minimization step: 4769. Total energy = 3147 kcal/mol (3144 without restraints) Performing minimization step: 4770. Total energy = 3146 kcal/mol (3143 without restraints) Performing minimization step: 4771. Total energy = 3146 kcal/mol (3143 without restraints) Performing minimization step: 4772. Total energy = 3145 kcal/mol (3142 without restraints) Performing minimization step: 4773. Total energy = 3144 kcal/mol (3142 without restraints) Performing minimization step: 4774. Total energy = 3144 kcal/mol (3141 without restraints) Performing minimization step: 4775. Total energy = 3143 kcal/mol (3141 without restraints) Performing minimization step: 4776. Total energy = 3143 kcal/mol (3140 without restraints) Performing minimization step: 4777. Total energy = 3142 kcal/mol (3140 without restraints) Performing minimization step: 4778. Total energy = 3142 kcal/mol (3139 without restraints) Performing minimization step: 4779. Total energy = 3141 kcal/mol (3139 without restraints) Performing minimization step: 4780. Total energy = 3141 kcal/mol (3138 without restraints) Performing minimization step: 4781. Total energy = 3140 kcal/mol (3138 without restraints) Performing minimization step: 4782. Total energy = 3140 kcal/mol (3137 without restraints) Performing minimization step: 4783. Total energy = 3139 kcal/mol (3137 without restraints) Performing minimization step: 4784. Total energy = 3139 kcal/mol (3136 without restraints) Performing minimization step: 4785. Total energy = 3138 kcal/mol (3136 without restraints) Performing minimization step: 4786. Total energy = 3138 kcal/mol (3135 without restraints) Performing minimization step: 4787. Total energy = 3137 kcal/mol (3135 without restraints) Performing minimization step: 4788. Total energy = 3137 kcal/mol (3134 without restraints) Performing minimization step: 4789. Total energy = 3136 kcal/mol (3134 without restraints) Performing minimization step: 4790. Total energy = 3136 kcal/mol (3133 without restraints) Performing minimization step: 4791. Total energy = 3135 kcal/mol (3133 without restraints) Performing minimization step: 4792. Total energy = 3135 kcal/mol (3132 without restraints) Performing minimization step: 4793. Total energy = 3134 kcal/mol (3132 without restraints) Performing minimization step: 4794. Total energy = 3134 kcal/mol (3131 without restraints) Performing minimization step: 4795. Total energy = 3133 kcal/mol (3131 without restraints) Performing minimization step: 4796. Total energy = 3133 kcal/mol (3130 without restraints) Performing minimization step: 4797. Total energy = 3132 kcal/mol (3130 without restraints) Performing minimization step: 4798. Total energy = 3132 kcal/mol (3129 without restraints) Performing minimization step: 4799. Total energy = 3131 kcal/mol (3128 without restraints) Performing minimization step: 4800. Total energy = 3131 kcal/mol (3128 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 3130 kcal/mol (3127 without restraints) Performing minimization step: 4802. Total energy = 3130 kcal/mol (3127 without restraints) Performing minimization step: 4803. Total energy = 3129 kcal/mol (3126 without restraints) Performing minimization step: 4804. Total energy = 3129 kcal/mol (3126 without restraints) Performing minimization step: 4805. Total energy = 3128 kcal/mol (3125 without restraints) Performing minimization step: 4806. Total energy = 3128 kcal/mol (3125 without restraints) Performing minimization step: 4807. Total energy = 3127 kcal/mol (3124 without restraints) Performing minimization step: 4808. Total energy = 3127 kcal/mol (3124 without restraints) Performing minimization step: 4809. Total energy = 3126 kcal/mol (3123 without restraints) Performing minimization step: 4810. Total energy = 3126 kcal/mol (3123 without restraints) Performing minimization step: 4811. Total energy = 3125 kcal/mol (3122 without restraints) Performing minimization step: 4812. Total energy = 3125 kcal/mol (3122 without restraints) Performing minimization step: 4813. Total energy = 3124 kcal/mol (3121 without restraints) Performing minimization step: 4814. Total energy = 3124 kcal/mol (3121 without restraints) Performing minimization step: 4815. Total energy = 3123 kcal/mol (3120 without restraints) Performing minimization step: 4816. Total energy = 3123 kcal/mol (3120 without restraints) Performing minimization step: 4817. Total energy = 3122 kcal/mol (3119 without restraints) Performing minimization step: 4818. Total energy = 3122 kcal/mol (3119 without restraints) Performing minimization step: 4819. Total energy = 3121 kcal/mol (3118 without restraints) Performing minimization step: 4820. Total energy = 3121 kcal/mol (3118 without restraints) Performing minimization step: 4821. Total energy = 3120 kcal/mol (3117 without restraints) Performing minimization step: 4822. Total energy = 3120 kcal/mol (3117 without restraints) Performing minimization step: 4823. Total energy = 3119 kcal/mol (3116 without restraints) Performing minimization step: 4824. Total energy = 3119 kcal/mol (3116 without restraints) Performing minimization step: 4825. Total energy = 3118 kcal/mol (3115 without restraints) Performing minimization step: 4826. Total energy = 3118 kcal/mol (3115 without restraints) Performing minimization step: 4827. Total energy = 3117 kcal/mol (3114 without restraints) Performing minimization step: 4828. Total energy = 3117 kcal/mol (3114 without restraints) Performing minimization step: 4829. Total energy = 3116 kcal/mol (3113 without restraints) Performing minimization step: 4830. Total energy = 3116 kcal/mol (3113 without restraints) Performing minimization step: 4831. Total energy = 3115 kcal/mol (3112 without restraints) Performing minimization step: 4832. Total energy = 3115 kcal/mol (3112 without restraints) Performing minimization step: 4833. Total energy = 3114 kcal/mol (3111 without restraints) Performing minimization step: 4834. Total energy = 3114 kcal/mol (3111 without restraints) Performing minimization step: 4835. Total energy = 3113 kcal/mol (3110 without restraints) Performing minimization step: 4836. Total energy = 3113 kcal/mol (3110 without restraints) Performing minimization step: 4837. Total energy = 3112 kcal/mol (3109 without restraints) Performing minimization step: 4838. Total energy = 3112 kcal/mol (3109 without restraints) Performing minimization step: 4839. Total energy = 3111 kcal/mol (3108 without restraints) Performing minimization step: 4840. Total energy = 3111 kcal/mol (3108 without restraints) Performing minimization step: 4841. Total energy = 3110 kcal/mol (3107 without restraints) Performing minimization step: 4842. Total energy = 3110 kcal/mol (3107 without restraints) Performing minimization step: 4843. Total energy = 3109 kcal/mol (3106 without restraints) Performing minimization step: 4844. Total energy = 3109 kcal/mol (3106 without restraints) Performing minimization step: 4845. Total energy = 3108 kcal/mol (3105 without restraints) Performing minimization step: 4846. Total energy = 3108 kcal/mol (3105 without restraints) Performing minimization step: 4847. Total energy = 3107 kcal/mol (3105 without restraints) Performing minimization step: 4848. Total energy = 3107 kcal/mol (3104 without restraints) Performing minimization step: 4849. Total energy = 3106 kcal/mol (3104 without restraints) Performing minimization step: 4850. Total energy = 3106 kcal/mol (3103 without restraints) Performing minimization step: 4851. Total energy = 3105 kcal/mol (3103 without restraints) Performing minimization step: 4852. Total energy = 3105 kcal/mol (3102 without restraints) Performing minimization step: 4853. Total energy = 3104 kcal/mol (3102 without restraints) Performing minimization step: 4854. Total energy = 3104 kcal/mol (3101 without restraints) Performing minimization step: 4855. Total energy = 3103 kcal/mol (3101 without restraints) Performing minimization step: 4856. Total energy = 3103 kcal/mol (3100 without restraints) Performing minimization step: 4857. Total energy = 3102 kcal/mol (3100 without restraints) Performing minimization step: 4858. Total energy = 3102 kcal/mol (3099 without restraints) Performing minimization step: 4859. Total energy = 3101 kcal/mol (3099 without restraints) Performing minimization step: 4860. Total energy = 3101 kcal/mol (3098 without restraints) Performing minimization step: 4861. Total energy = 3100 kcal/mol (3098 without restraints) Performing minimization step: 4862. Total energy = 3100 kcal/mol (3097 without restraints) Performing minimization step: 4863. Total energy = 3099 kcal/mol (3097 without restraints) Performing minimization step: 4864. Total energy = 3099 kcal/mol (3096 without restraints) Performing minimization step: 4865. Total energy = 3098 kcal/mol (3096 without restraints) Performing minimization step: 4866. Total energy = 3098 kcal/mol (3095 without restraints) Performing minimization step: 4867. Total energy = 3097 kcal/mol (3095 without restraints) Performing minimization step: 4868. Total energy = 3097 kcal/mol (3094 without restraints) Performing minimization step: 4869. Total energy = 3096 kcal/mol (3094 without restraints) Performing minimization step: 4870. Total energy = 3096 kcal/mol (3093 without restraints) Performing minimization step: 4871. Total energy = 3095 kcal/mol (3093 without restraints) Performing minimization step: 4872. Total energy = 3095 kcal/mol (3092 without restraints) Performing minimization step: 4873. Total energy = 3094 kcal/mol (3092 without restraints) Performing minimization step: 4874. Total energy = 3094 kcal/mol (3091 without restraints) Performing minimization step: 4875. Total energy = 3093 kcal/mol (3091 without restraints) Performing minimization step: 4876. Total energy = 3093 kcal/mol (3090 without restraints) Performing minimization step: 4877. Total energy = 3093 kcal/mol (3090 without restraints) Performing minimization step: 4878. Total energy = 3092 kcal/mol (3089 without restraints) Performing minimization step: 4879. Total energy = 3092 kcal/mol (3089 without restraints) Performing minimization step: 4880. Total energy = 3091 kcal/mol (3088 without restraints) Performing minimization step: 4881. Total energy = 3091 kcal/mol (3088 without restraints) Performing minimization step: 4882. Total energy = 3090 kcal/mol (3088 without restraints) Performing minimization step: 4883. Total energy = 3090 kcal/mol (3087 without restraints) Performing minimization step: 4884. Total energy = 3089 kcal/mol (3087 without restraints) Performing minimization step: 4885. Total energy = 3089 kcal/mol (3086 without restraints) Performing minimization step: 4886. Total energy = 3088 kcal/mol (3086 without restraints) Performing minimization step: 4887. Total energy = 3088 kcal/mol (3085 without restraints) Performing minimization step: 4888. Total energy = 3087 kcal/mol (3085 without restraints) Performing minimization step: 4889. Total energy = 3087 kcal/mol (3084 without restraints) Performing minimization step: 4890. Total energy = 3086 kcal/mol (3084 without restraints) Performing minimization step: 4891. Total energy = 3086 kcal/mol (3083 without restraints) Performing minimization step: 4892. Total energy = 3085 kcal/mol (3083 without restraints) Performing minimization step: 4893. Total energy = 3085 kcal/mol (3082 without restraints) Performing minimization step: 4894. Total energy = 3084 kcal/mol (3082 without restraints) Performing minimization step: 4895. Total energy = 3084 kcal/mol (3081 without restraints) Performing minimization step: 4896. Total energy = 3083 kcal/mol (3081 without restraints) Performing minimization step: 4897. Total energy = 3083 kcal/mol (3080 without restraints) Performing minimization step: 4898. Total energy = 3082 kcal/mol (3080 without restraints) Performing minimization step: 4899. Total energy = 3082 kcal/mol (3079 without restraints) Performing minimization step: 4900. Total energy = 3082 kcal/mol (3079 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 3081 kcal/mol (3078 without restraints) Performing minimization step: 4902. Total energy = 3081 kcal/mol (3078 without restraints) Performing minimization step: 4903. Total energy = 3080 kcal/mol (3078 without restraints) Performing minimization step: 4904. Total energy = 3080 kcal/mol (3077 without restraints) Performing minimization step: 4905. Total energy = 3079 kcal/mol (3077 without restraints) Performing minimization step: 4906. Total energy = 3079 kcal/mol (3076 without restraints) Performing minimization step: 4907. Total energy = 3078 kcal/mol (3076 without restraints) Performing minimization step: 4908. Total energy = 3078 kcal/mol (3075 without restraints) Performing minimization step: 4909. Total energy = 3077 kcal/mol (3075 without restraints) Performing minimization step: 4910. Total energy = 3077 kcal/mol (3074 without restraints) Performing minimization step: 4911. Total energy = 3076 kcal/mol (3074 without restraints) Performing minimization step: 4912. Total energy = 3076 kcal/mol (3073 without restraints) Performing minimization step: 4913. Total energy = 3075 kcal/mol (3073 without restraints) Performing minimization step: 4914. Total energy = 3075 kcal/mol (3072 without restraints) Performing minimization step: 4915. Total energy = 3074 kcal/mol (3072 without restraints) Performing minimization step: 4916. Total energy = 3074 kcal/mol (3071 without restraints) Performing minimization step: 4917. Total energy = 3074 kcal/mol (3071 without restraints) Performing minimization step: 4918. Total energy = 3073 kcal/mol (3070 without restraints) Performing minimization step: 4919. Total energy = 3073 kcal/mol (3070 without restraints) Performing minimization step: 4920. Total energy = 3072 kcal/mol (3070 without restraints) Performing minimization step: 4921. Total energy = 3072 kcal/mol (3069 without restraints) Performing minimization step: 4922. Total energy = 3071 kcal/mol (3069 without restraints) Performing minimization step: 4923. Total energy = 3071 kcal/mol (3068 without restraints) Performing minimization step: 4924. Total energy = 3070 kcal/mol (3068 without restraints) Performing minimization step: 4925. Total energy = 3070 kcal/mol (3067 without restraints) Performing minimization step: 4926. Total energy = 3069 kcal/mol (3067 without restraints) Performing minimization step: 4927. Total energy = 3069 kcal/mol (3066 without restraints) Performing minimization step: 4928. Total energy = 3068 kcal/mol (3066 without restraints) Performing minimization step: 4929. Total energy = 3068 kcal/mol (3065 without restraints) Performing minimization step: 4930. Total energy = 3067 kcal/mol (3065 without restraints) Performing minimization step: 4931. Total energy = 3067 kcal/mol (3064 without restraints) Performing minimization step: 4932. Total energy = 3067 kcal/mol (3064 without restraints) Performing minimization step: 4933. Total energy = 3066 kcal/mol (3063 without restraints) Performing minimization step: 4934. Total energy = 3066 kcal/mol (3063 without restraints) Performing minimization step: 4935. Total energy = 3065 kcal/mol (3063 without restraints) Performing minimization step: 4936. Total energy = 3065 kcal/mol (3062 without restraints) Performing minimization step: 4937. Total energy = 3064 kcal/mol (3062 without restraints) Performing minimization step: 4938. Total energy = 3064 kcal/mol (3061 without restraints) Performing minimization step: 4939. Total energy = 3063 kcal/mol (3061 without restraints) Performing minimization step: 4940. Total energy = 3063 kcal/mol (3060 without restraints) Performing minimization step: 4941. Total energy = 3062 kcal/mol (3060 without restraints) Performing minimization step: 4942. Total energy = 3062 kcal/mol (3059 without restraints) Performing minimization step: 4943. Total energy = 3061 kcal/mol (3059 without restraints) Performing minimization step: 4944. Total energy = 3061 kcal/mol (3058 without restraints) Performing minimization step: 4945. Total energy = 3061 kcal/mol (3058 without restraints) Performing minimization step: 4946. Total energy = 3060 kcal/mol (3057 without restraints) Performing minimization step: 4947. Total energy = 3060 kcal/mol (3057 without restraints) Performing minimization step: 4948. Total energy = 3059 kcal/mol (3057 without restraints) Performing minimization step: 4949. Total energy = 3059 kcal/mol (3056 without restraints) Performing minimization step: 4950. Total energy = 3058 kcal/mol (3056 without restraints) Performing minimization step: 4951. Total energy = 3058 kcal/mol (3055 without restraints) Performing minimization step: 4952. Total energy = 3057 kcal/mol (3055 without restraints) Performing minimization step: 4953. Total energy = 3057 kcal/mol (3054 without restraints) Performing minimization step: 4954. Total energy = 3056 kcal/mol (3054 without restraints) Performing minimization step: 4955. Total energy = 3056 kcal/mol (3053 without restraints) Performing minimization step: 4956. Total energy = 3055 kcal/mol (3053 without restraints) Performing minimization step: 4957. Total energy = 3055 kcal/mol (3052 without restraints) Performing minimization step: 4958. Total energy = 3055 kcal/mol (3052 without restraints) Performing minimization step: 4959. Total energy = 3054 kcal/mol (3052 without restraints) Performing minimization step: 4960. Total energy = 3054 kcal/mol (3051 without restraints) Performing minimization step: 4961. Total energy = 3053 kcal/mol (3051 without restraints) Performing minimization step: 4962. Total energy = 3053 kcal/mol (3050 without restraints) Performing minimization step: 4963. Total energy = 3052 kcal/mol (3050 without restraints) Performing minimization step: 4964. Total energy = 3052 kcal/mol (3049 without restraints) Performing minimization step: 4965. Total energy = 3051 kcal/mol (3049 without restraints) Performing minimization step: 4966. Total energy = 3051 kcal/mol (3048 without restraints) Performing minimization step: 4967. Total energy = 3050 kcal/mol (3048 without restraints) Performing minimization step: 4968. Total energy = 3050 kcal/mol (3047 without restraints) Performing minimization step: 4969. Total energy = 3050 kcal/mol (3047 without restraints) Performing minimization step: 4970. Total energy = 3049 kcal/mol (3047 without restraints) Performing minimization step: 4971. Total energy = 3049 kcal/mol (3046 without restraints) Performing minimization step: 4972. Total energy = 3048 kcal/mol (3046 without restraints) Performing minimization step: 4973. Total energy = 3048 kcal/mol (3045 without restraints) Performing minimization step: 4974. Total energy = 3047 kcal/mol (3045 without restraints) Performing minimization step: 4975. Total energy = 3047 kcal/mol (3044 without restraints) Performing minimization step: 4976. Total energy = 3046 kcal/mol (3044 without restraints) Performing minimization step: 4977. Total energy = 3046 kcal/mol (3043 without restraints) Performing minimization step: 4978. Total energy = 3046 kcal/mol (3043 without restraints) Performing minimization step: 4979. Total energy = 3045 kcal/mol (3043 without restraints) Performing minimization step: 4980. Total energy = 3045 kcal/mol (3042 without restraints) Performing minimization step: 4981. Total energy = 3044 kcal/mol (3042 without restraints) Performing minimization step: 4982. Total energy = 3044 kcal/mol (3041 without restraints) Performing minimization step: 4983. Total energy = 3043 kcal/mol (3041 without restraints) Performing minimization step: 4984. Total energy = 3043 kcal/mol (3040 without restraints) Performing minimization step: 4985. Total energy = 3042 kcal/mol (3040 without restraints) Performing minimization step: 4986. Total energy = 3042 kcal/mol (3039 without restraints) Performing minimization step: 4987. Total energy = 3042 kcal/mol (3039 without restraints) Performing minimization step: 4988. Total energy = 3041 kcal/mol (3038 without restraints) Performing minimization step: 4989. Total energy = 3041 kcal/mol (3038 without restraints) Performing minimization step: 4990. Total energy = 3040 kcal/mol (3038 without restraints) Performing minimization step: 4991. Total energy = 3040 kcal/mol (3037 without restraints) Performing minimization step: 4992. Total energy = 3039 kcal/mol (3037 without restraints) Performing minimization step: 4993. Total energy = 3039 kcal/mol (3036 without restraints) Performing minimization step: 4994. Total energy = 3038 kcal/mol (3036 without restraints) Performing minimization step: 4995. Total energy = 3038 kcal/mol (3035 without restraints) Performing minimization step: 4996. Total energy = 3038 kcal/mol (3035 without restraints) Performing minimization step: 4997. Total energy = 3037 kcal/mol (3034 without restraints) Performing minimization step: 4998. Total energy = 3037 kcal/mol (3034 without restraints) Performing minimization step: 4999. Total energy = 3036 kcal/mol (3034 without restraints) Performing minimization step: 5000. Total energy = 3036 kcal/mol (3033 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/233477f3/tmp/hhr1ext_refx/hhr1ext_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to hhr1ext_refx.pdb DONE!