============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol.pdb ============================================================================= Error: recognition of atom ATOM 17 'HO5 DC A 1 ... failed. Atom erased. Error: recognition of atom ATOM 21 1H2' DC A 1 ... failed. Atom erased. Error: recognition of atom ATOM 22 2H2' DC A 1 ... failed. Atom erased. Error: recognition of atom ATOM 53 1H2' DA A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 2H2' DA A 2 ... failed. Atom erased. Error: recognition of atom ATOM 86 1H2' DG A 3 ... failed. Atom erased. Error: recognition of atom ATOM 87 2H2' DG A 3 ... failed. Atom erased. Error: recognition of atom ATOM 116 1H2' DC A 4 ... failed. Atom erased. Error: recognition of atom ATOM 117 2H2' DC A 4 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DA A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DA A 5 ... failed. Atom erased. Error: recognition of atom ATOM 178 1H2' DC A 6 ... failed. Atom erased. Error: recognition of atom ATOM 179 2H2' DC A 6 ... failed. Atom erased. Error: recognition of atom ATOM 208 1H2' DC A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2H2' DC A 7 ... failed. Atom erased. Error: recognition of atom ATOM 241 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 273 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 303 1H2' DC A 10 ... failed. Atom erased. Error: recognition of atom ATOM 304 2H2' DC A 10 ... failed. Atom erased. Error: recognition of atom ATOM 333 1H2' DC A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 2H2' DC A 11 ... failed. Atom erased. Error: recognition of atom ATOM 364 1H2' DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 2H2' DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 396 1H2' DT A 13 ... failed. Atom erased. Error: recognition of atom ATOM 397 2H2' DT A 13 ... failed. Atom erased. Error: recognition of atom ATOM 430 1H2' DG A 14 ... failed. Atom erased. Error: recognition of atom ATOM 431 2H2' DG A 14 ... failed. Atom erased. Error: recognition of atom ATOM 461 1H2' DT A 15 ... failed. Atom erased. Error: recognition of atom ATOM 462 2H2' DT A 15 ... failed. Atom erased. Error: recognition of atom ATOM 495 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 496 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 525 1H2' DC A 17 ... failed. Atom erased. Error: recognition of atom ATOM 526 2H2' DC A 17 ... failed. Atom erased. Error: recognition of atom ATOM 556 1H2' DT A 18 ... failed. Atom erased. Error: recognition of atom ATOM 557 2H2' DT A 18 ... failed. Atom erased. Error: recognition of atom ATOM 588 1H2' DT A 19 ... failed. Atom erased. Error: recognition of atom ATOM 589 2H2' DT A 19 ... failed. Atom erased. Error: recognition of atom ATOM 620 1H2' DT A 20 ... failed. Atom erased. Error: recognition of atom ATOM 621 2H2' DT A 20 ... failed. Atom erased. Error: recognition of atom ATOM 654 1H2' DG A 21 ... failed. Atom erased. Error: recognition of atom ATOM 655 2H2' DG A 21 ... failed. Atom erased. Error: recognition of atom ATOM 687 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 688 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 720 1H2' DG A 23 ... failed. Atom erased. Error: recognition of atom ATOM 721 2H2' DG A 23 ... failed. Atom erased. Error: recognition of atom ATOM 752 1H2' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 753 2H2' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 785 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 786 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 816 1H2' DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 817 2H2' DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 850 1H2' DG A 27 ... failed. Atom erased. Error: recognition of atom ATOM 851 2H2' DG A 27 ... failed. Atom erased. Error: recognition of atom ATOM 880 1H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 881 2H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 911 1H2' DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 912 2H2' DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 945 1H2' DG A 30 ... failed. Atom erased. Error: recognition of atom ATOM 946 2H2' DG A 30 ... failed. Atom erased. Error: recognition of atom ATOM 978 1H2' DG A 31 ... failed. Atom erased. Error: recognition of atom ATOM 979 2H2' DG A 31 ... failed. Atom erased. Error: recognition of atom ATOM 1009 1H2' DT A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1010 2H2' DT A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1040 1H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1041 2H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1070 1H2' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1071 2H2' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1102 1H2' DA A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1103 2H2' DA A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1134 1H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1135 2H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1167 1H2' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1168 2H2' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1200 1H2' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1201 2H2' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1233 1H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1234 2H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1263 1H2' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1264 2H2' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1296 1H2' DG A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1297 2H2' DG A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1327 1H2' DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1328 2H2' DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1359 1H2' DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1360 2H2' DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1392 1H2' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1393 2H2' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1424 1H2' DA A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1425 2H2' DA A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1455 1H2' DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1456 2H2' DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1489 1H2' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1490 2H2' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1522 1H2' DG A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1523 2H2' DG A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1554 1H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1555 2H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1584 1H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1585 2H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1613 'HO3 DA A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1617 1H2' DA A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1618 2H2' DA A 51 ... failed. Atom erased. Missing atom added: HETATM 1 P DC A 1 0.079 -0.508 -2.222 1.00 0.00 P Missing atom added: HETATM 11 H2'2 DC A 1 1.571 0.304 4.170 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 1 -0.178 -0.612 3.856 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 2 -1.466 -3.974 8.167 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 2 -2.709 -4.639 6.749 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 3 -6.567 -7.875 9.721 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 3 -6.742 -8.474 7.822 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 4 -11.421 -10.149 6.733 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 4 -10.754 -10.558 4.894 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 5 -14.122 -13.615 2.346 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 5 -12.799 -13.606 0.847 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 6 -14.518 -15.408 -4.139 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 6 -12.592 -15.921 -4.289 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 7 -9.744 -15.980 -8.291 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 7 -8.657 -17.258 -7.204 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -8.807 -22.555 -13.988 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -7.576 -21.009 -14.290 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -4.581 -21.745 -17.266 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -3.447 -20.668 -16.021 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 10 3.091 -19.253 -14.123 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 10 3.097 -20.684 -12.727 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 11 8.277 -20.558 -11.340 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 11 8.096 -22.496 -10.888 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 9.377 -27.343 -8.990 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 10.932 -27.869 -8.359 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 13 10.535 -29.465 -14.619 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 13 10.611 -30.865 -15.681 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 14 10.480 -38.586 -11.464 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 14 9.502 -37.085 -10.578 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 15 5.816 -34.439 -9.510 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 15 4.060 -34.509 -9.432 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 0.946 -30.573 -6.331 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 2.139 -28.972 -6.438 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 17 -5.966 -30.575 -9.748 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 17 -5.920 -30.659 -7.752 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 18 -5.013 -25.356 -3.117 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 18 -3.414 -24.624 -3.083 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 19 -2.846 -28.165 -0.043 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 19 -2.062 -27.795 1.488 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 20 6.962 -27.042 1.426 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 20 6.998 -26.303 3.022 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 21 7.611 -21.864 -0.267 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 21 6.491 -21.517 -1.886 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 7.356 -16.283 -4.532 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 5.397 -16.324 -4.929 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 23 4.281 -13.263 -9.219 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 23 2.440 -13.197 -8.441 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 24 -2.403 -11.196 -10.697 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 24 -2.830 -10.896 -8.767 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -8.141 -9.123 -10.460 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -8.062 -8.528 -8.553 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 26 -11.378 -7.289 -5.885 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 26 -12.748 -6.188 -5.957 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 27 -15.575 -5.882 -2.112 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 27 -14.142 -5.241 -0.874 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 28 -15.638 -3.360 4.649 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 28 -13.930 -2.405 4.243 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 29 -11.329 -0.442 7.174 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 29 -11.377 0.575 8.609 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 30 -7.135 2.858 10.910 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 30 -7.077 3.855 9.178 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 31 -2.720 7.281 13.539 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 31 -2.740 7.959 11.658 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 32 -0.521 11.088 9.837 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 32 0.170 12.676 10.144 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 33 2.566 14.219 6.321 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 33 0.887 14.670 5.334 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 34 2.715 16.525 -0.054 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 34 0.828 17.132 0.208 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 35 -0.040 17.522 -4.794 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 35 -1.982 17.820 -4.423 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 36 -5.293 18.735 -9.346 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 36 -6.359 19.491 -7.833 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 37 -11.645 21.517 -9.653 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 37 -11.363 22.455 -7.910 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 38 -15.696 24.135 -6.157 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 38 -14.455 25.208 -5.015 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 39 -15.594 29.931 -1.487 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 39 -16.355 28.131 -1.068 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 40 -17.545 24.443 2.893 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 40 -16.983 23.063 1.559 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 41 -14.670 17.552 2.159 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 41 -12.884 18.171 2.809 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 42 -16.509 15.915 7.211 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 42 -17.612 15.041 8.268 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 43 -18.709 13.234 6.919 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 43 -19.984 12.568 5.906 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 44 -12.654 12.786 5.446 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 44 -11.656 12.124 3.845 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 45 -15.354 11.364 -4.030 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 45 -13.382 11.627 -3.830 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 46 -9.160 11.032 -4.839 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 46 -8.399 9.748 -5.770 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 47 -3.050 9.451 -6.625 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 47 -2.885 9.167 -4.653 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 48 2.545 9.479 -3.226 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 48 1.792 8.514 -1.645 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 49 6.280 8.554 1.886 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 49 5.070 7.129 2.592 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 50 6.547 5.754 7.427 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 50 5.373 4.226 6.896 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 51 4.878 0.683 11.562 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 51 4.099 -0.167 9.928 1.00 0.00 H Number of atoms: 1623 Number of residues: 51 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 1751 Number of angles built: 3180 Number of dihedrals built: 4757 Number of impropers built: 350 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 1311322 Number of van der Waals pairs: 193579 Number of H-bonds built: 41 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 13 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 496280.5732 kcal/mol (493386.6989 without restraints) Performing minimization step: 2. Total energy = 472689.7569 kcal/mol (470008.3951 without restraints) Performing minimization step: 3. Total energy = 450815.2776 kcal/mol (448326.8814 without restraints) Performing minimization step: 4. Total energy = 430499.5771 kcal/mol (428186.4669 without restraints) Performing minimization step: 5. Total energy = 411600.1713 kcal/mol (409446.3615 without restraints) Performing minimization step: 6. Total energy = 393988.2573 kcal/mol (391979.3007 without restraints) Performing minimization step: 7. Total energy = 377547.4581 kcal/mol (375670.3050 without restraints) Performing minimization step: 8. Total energy = 362172.6861 kcal/mol (360415.5564 without restraints) Performing minimization step: 9. Total energy = 347769.1103 kcal/mol (346121.3778 without restraints) Performing minimization step: 10. Total energy = 334251.2152 kcal/mol (332703.3008 without restraints) Performing minimization step: 11. Total energy = 321541.9388 kcal/mol (320085.2135 without restraints) Performing minimization step: 12. Total energy = 309571.8822 kcal/mol (308198.5777 without restraints) Performing minimization step: 13. Total energy = 298278.5831 kcal/mol (296981.7096 without restraints) Performing minimization step: 14. Total energy = 287605.8478 kcal/mol (286379.1180 without restraints) Performing minimization step: 15. Total energy = 277503.1360 kcal/mol (276340.8962 without restraints) Performing minimization step: 16. Total energy = 267924.9966 kcal/mol (266822.1622 without restraints) Performing minimization step: 17. Total energy = 258830.5507 kcal/mol (257782.5482 without restraints) Performing minimization step: 18. Total energy = 250183.0174 kcal/mol (249185.7308 without restraints) Performing minimization step: 19. Total energy = 241949.2839 kcal/mol (240999.0063 without restraints) Performing minimization step: 20. Total energy = 234099.5135 kcal/mol (233192.9033 without restraints) Performing minimization step: 21. Total energy = 226606.7922 kcal/mol (225740.8332 without restraints) Performing minimization step: 22. Total energy = 219446.8101 kcal/mol (218618.7758 without restraints) Performing minimization step: 23. Total energy = 212597.5746 kcal/mol (211804.9965 without restraints) Performing minimization step: 24. Total energy = 206039.1551 kcal/mol (205279.7940 without restraints) Performing minimization step: 25. Total energy = 199753.4548 kcal/mol (199025.2752 without restraints) Performing minimization step: 26. Total energy = 193724.0071 kcal/mol (193025.1553 without restraints) Performing minimization step: 27. Total energy = 187935.7967 kcal/mol (187264.5800 without restraints) Performing minimization step: 28. Total energy = 182375.0994 kcal/mol (181729.9690 without restraints) Performing minimization step: 29. Total energy = 177029.3419 kcal/mol (176408.8772 without restraints) Performing minimization step: 30. Total energy = 171886.9776 kcal/mol (171289.8722 without restraints) Performing minimization step: 31. Total energy = 166937.3766 kcal/mol (166362.4266 without restraints) Performing minimization step: 32. Total energy = 162170.7300 kcal/mol (161616.8227 without restraints) Performing minimization step: 33. Total energy = 157577.9638 kcal/mol (157044.0691 without restraints) Performing minimization step: 34. Total energy = 153150.6652 kcal/mol (152635.8266 without restraints) Performing minimization step: 35. Total energy = 148881.0157 kcal/mol (148384.3433 without restraints) Performing minimization step: 36. Total energy = 144761.7330 kcal/mol (144282.3971 without restraints) Performing minimization step: 37. Total energy = 140786.0197 kcal/mol (140323.2449 without restraints) Performing minimization step: 38. Total energy = 136947.5180 kcal/mol (136500.5783 without restraints) Performing minimization step: 39. Total energy = 133240.2689 kcal/mol (132808.4833 without restraints) Performing minimization step: 40. Total energy = 129658.6771 kcal/mol (129241.4054 without restraints) Performing minimization step: 41. Total energy = 126197.4791 kcal/mol (125794.1186 without restraints) Performing minimization step: 42. Total energy = 122851.7149 kcal/mol (122461.6971 without restraints) Performing minimization step: 43. Total energy = 119616.7031 kcal/mol (119239.4912 without restraints) Performing minimization step: 44. Total energy = 116488.0184 kcal/mol (116123.1044 without restraints) Performing minimization step: 45. Total energy = 113461.4717 kcal/mol (113108.3743 without restraints) Performing minimization step: 46. Total energy = 110533.0916 kcal/mol (110191.3544 without restraints) Performing minimization step: 47. Total energy = 107699.1089 kcal/mol (107368.2985 without restraints) Performing minimization step: 48. Total energy = 104955.9417 kcal/mol (104635.6457 without restraints) Performing minimization step: 49. Total energy = 102300.1821 kcal/mol (101990.0083 without restraints) Performing minimization step: 50. Total energy = 99728.5848 kcal/mol (99428.1591 without restraints) Performing minimization step: 51. Total energy = 97238.0558 kcal/mol (96947.0217 without restraints) Performing minimization step: 52. Total energy = 94825.6428 kcal/mol (94543.6599 without restraints) Performing minimization step: 53. Total energy = 92488.5265 kcal/mol (92215.2694 without restraints) Performing minimization step: 54. Total energy = 90224.0119 kcal/mol (89959.1698 without restraints) Performing minimization step: 55. Total energy = 88029.5215 kcal/mol (87772.7967 without restraints) Performing minimization step: 56. Total energy = 85902.5879 kcal/mol (85653.6954 without restraints) Performing minimization step: 57. Total energy = 83840.8478 kcal/mol (83599.5147 without restraints) Performing minimization step: 58. Total energy = 81842.0361 kcal/mol (81608.0005 without restraints) Performing minimization step: 59. Total energy = 79903.9806 kcal/mol (79676.9915 without restraints) Performing minimization step: 60. Total energy = 78024.5970 kcal/mol (77804.4134 without restraints) Performing minimization step: 61. Total energy = 76201.8845 kcal/mol (75988.2750 without restraints) Performing minimization step: 62. Total energy = 74433.9212 kcal/mol (74226.6634 without restraints) Performing minimization step: 63. Total energy = 72718.8604 kcal/mol (72517.7407 without restraints) Performing minimization step: 64. Total energy = 71054.9269 kcal/mol (70859.7398 without restraints) Performing minimization step: 65. Total energy = 69440.4134 kcal/mol (69250.9613 without restraints) Performing minimization step: 66. Total energy = 67873.6775 kcal/mol (67689.7702 without restraints) Performing minimization step: 67. Total energy = 66353.1385 kcal/mol (66174.5930 without restraints) Performing minimization step: 68. Total energy = 64877.2745 kcal/mol (64703.9146 without restraints) Performing minimization step: 69. Total energy = 63444.6203 kcal/mol (63276.2761 without restraints) Performing minimization step: 70. Total energy = 62053.7639 kcal/mol (61890.2721 without restraints) Performing minimization step: 71. Total energy = 60703.3453 kcal/mol (60544.5481 without restraints) Performing minimization step: 72. Total energy = 59392.0533 kcal/mol (59237.7988 without restraints) Performing minimization step: 73. Total energy = 58118.6239 kcal/mol (57968.7657 without restraints) Performing minimization step: 74. Total energy = 56881.8385 kcal/mol (56736.2353 without restraints) Performing minimization step: 75. Total energy = 55680.5214 kcal/mol (55539.0369 without restraints) Performing minimization step: 76. Total energy = 54513.5386 kcal/mol (54376.0413 without restraints) Performing minimization step: 77. Total energy = 53379.7959 kcal/mol (53246.1589 without restraints) Performing minimization step: 78. Total energy = 52278.2371 kcal/mol (52148.3381 without restraints) Performing minimization step: 79. Total energy = 51207.8430 kcal/mol (51081.5636 without restraints) Performing minimization step: 80. Total energy = 50167.6293 kcal/mol (50044.8555 without restraints) Performing minimization step: 81. Total energy = 49156.6459 kcal/mol (49037.2675 without restraints) Performing minimization step: 82. Total energy = 48173.9751 kcal/mol (48057.8855 without restraints) Performing minimization step: 83. Total energy = 47218.7304 kcal/mol (47105.8269 without restraints) Performing minimization step: 84. Total energy = 46290.0556 kcal/mol (46180.2389 without restraints) Performing minimization step: 85. Total energy = 45387.1233 kcal/mol (45280.2974 without restraints) Performing minimization step: 86. Total energy = 44509.1342 kcal/mol (44405.2063 without restraints) Performing minimization step: 87. Total energy = 43655.3158 kcal/mol (43554.1963 without restraints) Performing minimization step: 88. Total energy = 42824.9214 kcal/mol (42726.5236 without restraints) Performing minimization step: 89. Total energy = 42017.2293 kcal/mol (41921.4695 without restraints) Performing minimization step: 90. Total energy = 41231.5417 kcal/mol (41138.3388 without restraints) Performing minimization step: 91. Total energy = 40467.1840 kcal/mol (40376.4599 without restraints) Performing minimization step: 92. Total energy = 39723.5040 kcal/mol (39635.1829 without restraints) Performing minimization step: 93. Total energy = 38999.8709 kcal/mol (38913.8796 without restraints) Performing minimization step: 94. Total energy = 38295.6746 kcal/mol (38211.9422 without restraints) Performing minimization step: 95. Total energy = 37610.3251 kcal/mol (37528.7833 without restraints) Performing minimization step: 96. Total energy = 36943.2518 kcal/mol (36863.8343 without restraints) Performing minimization step: 97. Total energy = 36293.9026 kcal/mol (36216.5453 without restraints) Performing minimization step: 98. Total energy = 35661.7434 kcal/mol (35586.3841 without restraints) Performing minimization step: 99. Total energy = 35046.2572 kcal/mol (34972.8361 without restraints) Performing minimization step: 100. Total energy = 34446.9441 kcal/mol (34375.4031 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 101. Total energy = 33863.3202 kcal/mol (33793.6032 without restraints) Performing minimization step: 102. Total energy = 33294.9173 kcal/mol (33226.9698 without restraints) Performing minimization step: 103. Total energy = 32741.2821 kcal/mol (32675.0515 without restraints) Performing minimization step: 104. Total energy = 32201.9760 kcal/mol (32137.4114 without restraints) Performing minimization step: 105. Total energy = 31676.5744 kcal/mol (31613.6265 without restraints) Performing minimization step: 106. Total energy = 31164.6663 kcal/mol (31103.2873 without restraints) Performing minimization step: 107. Total energy = 30665.8536 kcal/mol (30605.9974 without restraints) Performing minimization step: 108. Total energy = 30179.7516 kcal/mol (30121.3733 without restraints) Performing minimization step: 109. Total energy = 29705.9869 kcal/mol (29649.0434 without restraints) Performing minimization step: 110. Total energy = 29244.1986 kcal/mol (29188.6478 without restraints) Performing minimization step: 111. Total energy = 28794.0369 kcal/mol (28739.8382 without restraints) Performing minimization step: 112. Total energy = 28355.1632 kcal/mol (28302.2773 without restraints) Performing minimization step: 113. Total energy = 27927.2494 kcal/mol (27875.6383 without restraints) Performing minimization step: 114. Total energy = 27509.9782 kcal/mol (27459.6050 without restraints) Performing minimization step: 115. Total energy = 27103.0418 kcal/mol (27053.8705 without restraints) Performing minimization step: 116. Total energy = 26706.1419 kcal/mol (26658.1381 without restraints) Performing minimization step: 117. Total energy = 26318.9902 kcal/mol (26272.1203 without restraints) Performing minimization step: 118. Total energy = 25941.3071 kcal/mol (25895.5386 without restraints) Performing minimization step: 119. Total energy = 25572.8214 kcal/mol (25528.1229 without restraints) Performing minimization step: 120. Total energy = 25213.2706 kcal/mol (25169.6116 without restraints) Performing minimization step: 121. Total energy = 24862.4006 kcal/mol (24819.7515 without restraints) Performing minimization step: 122. Total energy = 24519.9648 kcal/mol (24478.2970 without restraints) Performing minimization step: 123. Total energy = 24185.7245 kcal/mol (24145.0102 without restraints) Performing minimization step: 124. Total energy = 23859.4481 kcal/mol (23819.6605 without restraints) Performing minimization step: 125. Total energy = 23540.9115 kcal/mol (23502.0244 without restraints) Performing minimization step: 126. Total energy = 23229.8971 kcal/mol (23191.8854 without restraints) Performing minimization step: 127. Total energy = 22926.1944 kcal/mol (22889.0335 without restraints) Performing minimization step: 128. Total energy = 22629.5990 kcal/mol (22593.2652 without restraints) Performing minimization step: 129. Total energy = 22339.9128 kcal/mol (22304.3831 without restraints) Performing minimization step: 130. Total energy = 22056.9437 kcal/mol (22022.1958 without restraints) Performing minimization step: 131. Total energy = 21780.5060 kcal/mol (21746.5182 without restraints) Performing minimization step: 132. Total energy = 21510.4189 kcal/mol (21477.1703 without restraints) Performing minimization step: 133. Total energy = 21246.5075 kcal/mol (21213.9777 without restraints) Performing minimization step: 134. Total energy = 20988.6023 kcal/mol (20956.7715 without restraints) Performing minimization step: 135. Total energy = 20736.5381 kcal/mol (20705.3874 without restraints) Performing minimization step: 136. Total energy = 20490.1554 kcal/mol (20459.6661 without restraints) Performing minimization step: 137. Total energy = 20249.2998 kcal/mol (20219.4537 without restraints) Performing minimization step: 138. Total energy = 20013.8207 kcal/mol (19984.6007 without restraints) Performing minimization step: 139. Total energy = 19783.5728 kcal/mol (19754.9618 without restraints) Performing minimization step: 140. Total energy = 19558.4144 kcal/mol (19530.3959 without restraints) Performing minimization step: 141. Total energy = 19338.2084 kcal/mol (19310.7666 without restraints) Performing minimization step: 142. Total energy = 19122.8218 kcal/mol (19095.9412 without restraints) Performing minimization step: 143. Total energy = 18912.1255 kcal/mol (18885.7910 without restraints) Performing minimization step: 144. Total energy = 18705.9940 kcal/mol (18680.1911 without restraints) Performing minimization step: 145. Total energy = 18504.3059 kcal/mol (18479.0204 without restraints) Performing minimization step: 146. Total energy = 18306.9429 kcal/mol (18282.1611 without restraints) Performing minimization step: 147. Total energy = 18113.7907 kcal/mol (18089.4992 without restraints) Performing minimization step: 148. Total energy = 17924.7378 kcal/mol (17900.9239 without restraints) Performing minimization step: 149. Total energy = 17739.6763 kcal/mol (17716.3272 without restraints) Performing minimization step: 150. Total energy = 17558.5016 kcal/mol (17535.6052 without restraints) Performing minimization step: 151. Total energy = 17381.1118 kcal/mol (17358.6562 without restraints) Performing minimization step: 152. Total energy = 17207.4079 kcal/mol (17185.3817 without restraints) Performing minimization step: 153. Total energy = 17037.2941 kcal/mol (17015.6861 without restraints) Performing minimization step: 154. Total energy = 16870.6772 kcal/mol (16849.4766 without restraints) Performing minimization step: 155. Total energy = 16707.4667 kcal/mol (16686.6630 without restraints) Performing minimization step: 156. Total energy = 16547.5742 kcal/mol (16527.1569 without restraints) Performing minimization step: 157. Total energy = 16390.9149 kcal/mol (16370.8744 without restraints) Performing minimization step: 158. Total energy = 16237.4058 kcal/mol (16217.7323 without restraints) Performing minimization step: 159. Total energy = 16086.9661 kcal/mol (16067.6503 without restraints) Performing minimization step: 160. Total energy = 15939.5176 kcal/mol (15920.5503 without restraints) Performing minimization step: 161. Total energy = 15794.9844 kcal/mol (15776.3568 without restraints) Performing minimization step: 162. Total energy = 15653.2921 kcal/mol (15634.9956 without restraints) Performing minimization step: 163. Total energy = 15514.3691 kcal/mol (15496.3953 without restraints) Performing minimization step: 164. Total energy = 15378.1455 kcal/mol (15360.4863 without restraints) Performing minimization step: 165. Total energy = 15244.5537 kcal/mol (15227.2012 without restraints) Performing minimization step: 166. Total energy = 15113.5277 kcal/mol (15096.4742 without restraints) Performing minimization step: 167. Total energy = 14985.0033 kcal/mol (14968.2414 without restraints) Performing minimization step: 168. Total energy = 14858.9182 kcal/mol (14842.4406 without restraints) Performing minimization step: 169. Total energy = 14735.2118 kcal/mol (14719.0115 without restraints) Performing minimization step: 170. Total energy = 14613.8253 kcal/mol (14597.8955 without restraints) Performing minimization step: 171. Total energy = 14494.7015 kcal/mol (14479.0354 without restraints) Performing minimization step: 172. Total energy = 14377.7846 kcal/mol (14362.3759 without restraints) Performing minimization step: 173. Total energy = 14263.0206 kcal/mol (14247.8628 without restraints) Performing minimization step: 174. Total energy = 14150.3569 kcal/mol (14135.4439 without restraints) Performing minimization step: 175. Total energy = 14039.7422 kcal/mol (14025.0681 without restraints) Performing minimization step: 176. Total energy = 13931.1267 kcal/mol (13916.6858 without restraints) Performing minimization step: 177. Total energy = 13824.4622 kcal/mol (13810.2488 without restraints) Performing minimization step: 178. Total energy = 13719.7014 kcal/mol (13705.7100 without restraints) Performing minimization step: 179. Total energy = 13616.7987 kcal/mol (13603.0239 without restraints) Performing minimization step: 180. Total energy = 13515.7095 kcal/mol (13502.1462 without restraints) Performing minimization step: 181. Total energy = 13416.3904 kcal/mol (13403.0336 without restraints) Performing minimization step: 182. Total energy = 13318.7994 kcal/mol (13305.6441 without restraints) Performing minimization step: 183. Total energy = 13222.8953 kcal/mol (13209.9368 without restraints) Performing minimization step: 184. Total energy = 13128.6384 kcal/mol (13115.8721 without restraints) Performing minimization step: 185. Total energy = 13035.9899 kcal/mol (13023.4111 without restraints) Performing minimization step: 186. Total energy = 12944.9118 kcal/mol (12932.5163 without restraints) Performing minimization step: 187. Total energy = 12855.3676 kcal/mol (12843.1510 without restraints) Performing minimization step: 188. Total energy = 12767.3216 kcal/mol (12755.2798 without restraints) Performing minimization step: 189. Total energy = 12680.7388 kcal/mol (12668.8677 without restraints) Performing minimization step: 190. Total energy = 12595.5854 kcal/mol (12583.8811 without restraints) Performing minimization step: 191. Total energy = 12511.8286 kcal/mol (12500.2872 without restraints) Performing minimization step: 192. Total energy = 12429.4361 kcal/mol (12418.0539 without restraints) Performing minimization step: 193. Total energy = 12348.3770 kcal/mol (12337.1504 without restraints) Performing minimization step: 194. Total energy = 12268.6206 kcal/mol (12257.5460 without restraints) Performing minimization step: 195. Total energy = 12190.1374 kcal/mol (12179.2115 without restraints) Performing minimization step: 196. Total energy = 12112.8988 kcal/mol (12102.1181 without restraints) Performing minimization step: 197. Total energy = 12036.8767 kcal/mol (12026.2379 without restraints) Performing minimization step: 198. Total energy = 11962.0437 kcal/mol (11951.5438 without restraints) Performing minimization step: 199. Total energy = 11888.3733 kcal/mol (11878.0091 without restraints) Performing minimization step: 200. Total energy = 11815.8401 kcal/mol (11805.6086 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 201. Total energy = 11744.4184 kcal/mol (11734.3167 without restraints) Performing minimization step: 202. Total energy = 11674.0836 kcal/mol (11664.1088 without restraints) Performing minimization step: 203. Total energy = 11604.8121 kcal/mol (11594.9615 without restraints) Performing minimization step: 204. Total energy = 11536.5808 kcal/mol (11526.8516 without restraints) Performing minimization step: 205. Total energy = 11469.3671 kcal/mol (11459.7567 without restraints) Performing minimization step: 206. Total energy = 11403.1491 kcal/mol (11393.6550 without restraints) Performing minimization step: 207. Total energy = 11337.9049 kcal/mol (11328.5245 without restraints) Performing minimization step: 208. Total energy = 11273.6136 kcal/mol (11264.3445 without restraints) Performing minimization step: 209. Total energy = 11210.2552 kcal/mol (11201.0951 without restraints) Performing minimization step: 210. Total energy = 11147.8099 kcal/mol (11138.7565 without restraints) Performing minimization step: 211. Total energy = 11086.2582 kcal/mol (11077.3091 without restraints) Performing minimization step: 212. Total energy = 11025.5813 kcal/mol (11016.7344 without restraints) Performing minimization step: 213. Total energy = 10965.7609 kcal/mol (10957.0141 without restraints) Performing minimization step: 214. Total energy = 10906.7792 kcal/mol (10898.1303 without restraints) Performing minimization step: 215. Total energy = 10848.6186 kcal/mol (10840.0656 without restraints) Performing minimization step: 216. Total energy = 10791.2623 kcal/mol (10782.8035 without restraints) Performing minimization step: 217. Total energy = 10734.6943 kcal/mol (10726.3275 without restraints) Performing minimization step: 218. Total energy = 10678.8978 kcal/mol (10670.6211 without restraints) Performing minimization step: 219. Total energy = 10623.8573 kcal/mol (10615.6691 without restraints) Performing minimization step: 220. Total energy = 10569.5576 kcal/mol (10561.4560 without restraints) Performing minimization step: 221. Total energy = 10515.9838 kcal/mol (10507.9670 without restraints) Performing minimization step: 222. Total energy = 10463.1212 kcal/mol (10455.1876 without restraints) Performing minimization step: 223. Total energy = 10410.9560 kcal/mol (10403.1039 without restraints) Performing minimization step: 224. Total energy = 10359.4742 kcal/mol (10351.7020 without restraints) Performing minimization step: 225. Total energy = 10308.6624 kcal/mol (10300.9685 without restraints) Performing minimization step: 226. Total energy = 10258.5078 kcal/mol (10250.8907 without restraints) Performing minimization step: 227. Total energy = 10208.9970 kcal/mol (10201.4552 without restraints) Performing minimization step: 228. Total energy = 10160.1180 kcal/mol (10152.6501 without restraints) Performing minimization step: 229. Total energy = 10111.8582 kcal/mol (10104.4627 without restraints) Performing minimization step: 230. Total energy = 10064.2060 kcal/mol (10056.8816 without restraints) Performing minimization step: 231. Total energy = 10017.1498 kcal/mol (10009.8951 without restraints) Performing minimization step: 232. Total energy = 9970.6783 kcal/mol (9963.4920 without restraints) Performing minimization step: 233. Total energy = 9924.7805 kcal/mol (9917.6614 without restraints) Performing minimization step: 234. Total energy = 9879.4458 kcal/mol (9872.3925 without restraints) Performing minimization step: 235. Total energy = 9834.6634 kcal/mol (9827.6748 without restraints) Performing minimization step: 236. Total energy = 9790.4233 kcal/mol (9783.4981 without restraints) Performing minimization step: 237. Total energy = 9746.7154 kcal/mol (9739.8525 without restraints) Performing minimization step: 238. Total energy = 9703.5301 kcal/mol (9696.7283 without restraints) Performing minimization step: 239. Total energy = 9660.8577 kcal/mol (9654.1160 without restraints) Performing minimization step: 240. Total energy = 9618.6890 kcal/mol (9612.0062 without restraints) Performing minimization step: 241. Total energy = 9577.0149 kcal/mol (9570.3900 without restraints) Performing minimization step: 242. Total energy = 9535.8265 kcal/mol (9529.2585 without restraints) Performing minimization step: 243. Total energy = 9495.1153 kcal/mol (9488.6031 without restraints) Performing minimization step: 244. Total energy = 9454.8726 kcal/mol (9448.4154 without restraints) Performing minimization step: 245. Total energy = 9415.0901 kcal/mol (9408.6868 without restraints) Performing minimization step: 246. Total energy = 9375.7602 kcal/mol (9369.4098 without restraints) Performing minimization step: 247. Total energy = 9336.8748 kcal/mol (9330.5764 without restraints) Performing minimization step: 248. Total energy = 9298.4261 kcal/mol (9292.1789 without restraints) Performing minimization step: 249. Total energy = 9260.4068 kcal/mol (9254.2099 without restraints) Performing minimization step: 250. Total energy = 9222.8091 kcal/mol (9216.6616 without restraints) Performing minimization step: 251. Total energy = 9185.6262 kcal/mol (9179.5272 without restraints) Performing minimization step: 252. Total energy = 9148.8508 kcal/mol (9142.7997 without restraints) Performing minimization step: 253. Total energy = 9112.4762 kcal/mol (9106.4720 without restraints) Performing minimization step: 254. Total energy = 9076.4957 kcal/mol (9070.5377 without restraints) Performing minimization step: 255. Total energy = 9040.9027 kcal/mol (9034.9901 without restraints) Performing minimization step: 256. Total energy = 9005.6909 kcal/mol (8999.8230 without restraints) Performing minimization step: 257. Total energy = 8970.8538 kcal/mol (8965.0297 without restraints) Performing minimization step: 258. Total energy = 8936.3853 kcal/mol (8930.6044 without restraints) Performing minimization step: 259. Total energy = 8902.2793 kcal/mol (8896.5410 without restraints) Performing minimization step: 260. Total energy = 8868.5301 kcal/mol (8862.8336 without restraints) Performing minimization step: 261. Total energy = 8835.1317 kcal/mol (8829.4764 without restraints) Performing minimization step: 262. Total energy = 8802.0787 kcal/mol (8796.4638 without restraints) Performing minimization step: 263. Total energy = 8769.3654 kcal/mol (8763.7904 without restraints) Performing minimization step: 264. Total energy = 8736.9866 kcal/mol (8731.4507 without restraints) Performing minimization step: 265. Total energy = 8704.9367 kcal/mol (8699.4395 without restraints) Performing minimization step: 266. Total energy = 8673.2112 kcal/mol (8667.7520 without restraints) Performing minimization step: 267. Total energy = 8641.8044 kcal/mol (8636.3826 without restraints) Performing minimization step: 268. Total energy = 8610.7112 kcal/mol (8605.3262 without restraints) Performing minimization step: 269. Total energy = 8579.9270 kcal/mol (8574.5782 without restraints) Performing minimization step: 270. Total energy = 8549.4468 kcal/mol (8544.1337 without restraints) Performing minimization step: 271. Total energy = 8519.2663 kcal/mol (8513.9883 without restraints) Performing minimization step: 272. Total energy = 8489.3807 kcal/mol (8484.1374 without restraints) Performing minimization step: 273. Total energy = 8459.7856 kcal/mol (8454.5764 without restraints) Performing minimization step: 274. Total energy = 8430.4765 kcal/mol (8425.3009 without restraints) Performing minimization step: 275. Total energy = 8401.4490 kcal/mol (8396.3064 without restraints) Performing minimization step: 276. Total energy = 8372.6992 kcal/mol (8367.5892 without restraints) Performing minimization step: 277. Total energy = 8344.2230 kcal/mol (8339.1450 without restraints) Performing minimization step: 278. Total energy = 8316.0158 kcal/mol (8310.9695 without restraints) Performing minimization step: 279. Total energy = 8288.0742 kcal/mol (8283.0590 without restraints) Performing minimization step: 280. Total energy = 8260.3939 kcal/mol (8255.4095 without restraints) Performing minimization step: 281. Total energy = 8232.9710 kcal/mol (8228.0167 without restraints) Performing minimization step: 282. Total energy = 8205.8018 kcal/mol (8200.8772 without restraints) Performing minimization step: 283. Total energy = 8178.8827 kcal/mol (8173.9876 without restraints) Performing minimization step: 284. Total energy = 8152.2102 kcal/mol (8147.3441 without restraints) Performing minimization step: 285. Total energy = 8125.7806 kcal/mol (8120.9431 without restraints) Performing minimization step: 286. Total energy = 8099.5904 kcal/mol (8094.7810 without restraints) Performing minimization step: 287. Total energy = 8073.6361 kcal/mol (8068.8543 without restraints) Performing minimization step: 288. Total energy = 8047.9145 kcal/mol (8043.1601 without restraints) Performing minimization step: 289. Total energy = 8022.4223 kcal/mol (8017.6949 without restraints) Performing minimization step: 290. Total energy = 7997.1562 kcal/mol (7992.4553 without restraints) Performing minimization step: 291. Total energy = 7972.1130 kcal/mol (7967.4383 without restraints) Performing minimization step: 292. Total energy = 7947.2895 kcal/mol (7942.6407 without restraints) Performing minimization step: 293. Total energy = 7922.6830 kcal/mol (7918.0597 without restraints) Performing minimization step: 294. Total energy = 7898.2902 kcal/mol (7893.6920 without restraints) Performing minimization step: 295. Total energy = 7874.1079 kcal/mol (7869.5344 without restraints) Performing minimization step: 296. Total energy = 7850.1334 kcal/mol (7845.5844 without restraints) Performing minimization step: 297. Total energy = 7826.3640 kcal/mol (7821.8391 without restraints) Performing minimization step: 298. Total energy = 7802.7966 kcal/mol (7798.2955 without restraints) Performing minimization step: 299. Total energy = 7779.4285 kcal/mol (7774.9508 without restraints) Performing minimization step: 300. Total energy = 7756.2571 kcal/mol (7751.8026 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 301. Total energy = 7733.2796 kcal/mol (7728.8479 without restraints) Performing minimization step: 302. Total energy = 7710.4934 kcal/mol (7706.0842 without restraints) Performing minimization step: 303. Total energy = 7687.8967 kcal/mol (7683.5097 without restraints) Performing minimization step: 304. Total energy = 7665.4860 kcal/mol (7661.1210 without restraints) Performing minimization step: 305. Total energy = 7643.2591 kcal/mol (7638.9159 without restraints) Performing minimization step: 306. Total energy = 7621.2135 kcal/mol (7616.8915 without restraints) Performing minimization step: 307. Total energy = 7599.3467 kcal/mol (7595.0457 without restraints) Performing minimization step: 308. Total energy = 7577.6565 kcal/mol (7573.3763 without restraints) Performing minimization step: 309. Total energy = 7556.1404 kcal/mol (7551.8807 without restraints) Performing minimization step: 310. Total energy = 7534.7963 kcal/mol (7530.5568 without restraints) Performing minimization step: 311. Total energy = 7513.6220 kcal/mol (7509.4026 without restraints) Performing minimization step: 312. Total energy = 7492.6151 kcal/mol (7488.4153 without restraints) Performing minimization step: 313. Total energy = 7471.7737 kcal/mol (7467.5934 without restraints) Performing minimization step: 314. Total energy = 7451.0951 kcal/mol (7446.9341 without restraints) Performing minimization step: 315. Total energy = 7430.5775 kcal/mol (7426.4354 without restraints) Performing minimization step: 316. Total energy = 7410.2189 kcal/mol (7406.0956 without restraints) Performing minimization step: 317. Total energy = 7390.0173 kcal/mol (7385.9124 without restraints) Performing minimization step: 318. Total energy = 7369.9702 kcal/mol (7365.8836 without restraints) Performing minimization step: 319. Total energy = 7350.0764 kcal/mol (7346.0078 without restraints) Performing minimization step: 320. Total energy = 7330.3333 kcal/mol (7326.2825 without restraints) Performing minimization step: 321. Total energy = 7310.7395 kcal/mol (7306.7063 without restraints) Performing minimization step: 322. Total energy = 7291.2930 kcal/mol (7287.2773 without restraints) Performing minimization step: 323. Total energy = 7271.9917 kcal/mol (7267.9930 without restraints) Performing minimization step: 324. Total energy = 7252.8339 kcal/mol (7248.8521 without restraints) Performing minimization step: 325. Total energy = 7233.8180 kcal/mol (7229.8530 without restraints) Performing minimization step: 326. Total energy = 7214.9419 kcal/mol (7210.9934 without restraints) Performing minimization step: 327. Total energy = 7196.2039 kcal/mol (7192.2717 without restraints) Performing minimization step: 328. Total energy = 7177.6022 kcal/mol (7173.6861 without restraints) Performing minimization step: 329. Total energy = 7159.1354 kcal/mol (7155.2351 without restraints) Performing minimization step: 330. Total energy = 7140.8017 kcal/mol (7136.9173 without restraints) Performing minimization step: 331. Total energy = 7122.5998 kcal/mol (7118.7309 without restraints) Performing minimization step: 332. Total energy = 7104.5276 kcal/mol (7100.6740 without restraints) Performing minimization step: 333. Total energy = 7086.5836 kcal/mol (7082.7452 without restraints) Performing minimization step: 334. Total energy = 7068.7663 kcal/mol (7064.9428 without restraints) Performing minimization step: 335. Total energy = 7051.0743 kcal/mol (7047.2656 without restraints) Performing minimization step: 336. Total energy = 7033.5059 kcal/mol (7029.7118 without restraints) Performing minimization step: 337. Total energy = 7016.0597 kcal/mol (7012.2801 without restraints) Performing minimization step: 338. Total energy = 6998.7342 kcal/mol (6994.9689 without restraints) Performing minimization step: 339. Total energy = 6981.5280 kcal/mol (6977.7768 without restraints) Performing minimization step: 340. Total energy = 6964.4402 kcal/mol (6960.7028 without restraints) Performing minimization step: 341. Total energy = 6947.4682 kcal/mol (6943.7447 without restraints) Performing minimization step: 342. Total energy = 6930.6115 kcal/mol (6926.9016 without restraints) Performing minimization step: 343. Total energy = 6913.8684 kcal/mol (6910.1719 without restraints) Performing minimization step: 344. Total energy = 6897.2378 kcal/mol (6893.5546 without restraints) Performing minimization step: 345. Total energy = 6880.7177 kcal/mol (6877.0473 without restraints) Performing minimization step: 346. Total energy = 6864.3075 kcal/mol (6860.6504 without restraints) Performing minimization step: 347. Total energy = 6848.0058 kcal/mol (6844.3615 without restraints) Performing minimization step: 348. Total energy = 6831.8111 kcal/mol (6828.1795 without restraints) Performing minimization step: 349. Total energy = 6815.7224 kcal/mol (6812.1034 without restraints) Performing minimization step: 350. Total energy = 6799.7385 kcal/mol (6796.1318 without restraints) Performing minimization step: 351. Total energy = 6783.8580 kcal/mol (6780.2637 without restraints) Performing minimization step: 352. Total energy = 6768.0799 kcal/mol (6764.4976 without restraints) Performing minimization step: 353. Total energy = 6752.4026 kcal/mol (6748.8323 without restraints) Performing minimization step: 354. Total energy = 6736.8257 kcal/mol (6733.2674 without restraints) Performing minimization step: 355. Total energy = 6721.3476 kcal/mol (6717.8009 without restraints) Performing minimization step: 356. Total energy = 6705.9671 kcal/mol (6702.4320 without restraints) Performing minimization step: 357. Total energy = 6690.6832 kcal/mol (6687.1595 without restraints) Performing minimization step: 358. Total energy = 6675.4948 kcal/mol (6671.9825 without restraints) Performing minimization step: 359. Total energy = 6660.4008 kcal/mol (6656.8997 without restraints) Performing minimization step: 360. Total energy = 6645.4003 kcal/mol (6641.9104 without restraints) Performing minimization step: 361. Total energy = 6630.4922 kcal/mol (6627.0132 without restraints) Performing minimization step: 362. Total energy = 6615.6752 kcal/mol (6612.2070 without restraints) Performing minimization step: 363. Total energy = 6600.9486 kcal/mol (6597.4911 without restraints) Performing minimization step: 364. Total energy = 6586.3113 kcal/mol (6582.8644 without restraints) Performing minimization step: 365. Total energy = 6571.7623 kcal/mol (6568.3259 without restraints) Performing minimization step: 366. Total energy = 6557.3008 kcal/mol (6553.8748 without restraints) Performing minimization step: 367. Total energy = 6542.9254 kcal/mol (6539.5095 without restraints) Performing minimization step: 368. Total energy = 6528.6355 kcal/mol (6525.2299 without restraints) Performing minimization step: 369. Total energy = 6514.4302 kcal/mol (6511.0347 without restraints) Performing minimization step: 370. Total energy = 6500.3087 kcal/mol (6496.9231 without restraints) Performing minimization step: 371. Total energy = 6486.2698 kcal/mol (6482.8940 without restraints) Performing minimization step: 372. Total energy = 6472.3126 kcal/mol (6468.9466 without restraints) Performing minimization step: 373. Total energy = 6458.4365 kcal/mol (6455.0801 without restraints) Performing minimization step: 374. Total energy = 6444.6400 kcal/mol (6441.2932 without restraints) Performing minimization step: 375. Total energy = 6430.9233 kcal/mol (6427.5859 without restraints) Performing minimization step: 376. Total energy = 6417.2847 kcal/mol (6413.9566 without restraints) Performing minimization step: 377. Total energy = 6403.7239 kcal/mol (6400.4050 without restraints) Performing minimization step: 378. Total energy = 6390.2398 kcal/mol (6386.9301 without restraints) Performing minimization step: 379. Total energy = 6376.8314 kcal/mol (6373.5308 without restraints) Performing minimization step: 380. Total energy = 6363.4985 kcal/mol (6360.2069 without restraints) Performing minimization step: 381. Total energy = 6350.2401 kcal/mol (6346.9573 without restraints) Performing minimization step: 382. Total energy = 6337.0555 kcal/mol (6333.7815 without restraints) Performing minimization step: 383. Total energy = 6323.9436 kcal/mol (6320.6783 without restraints) Performing minimization step: 384. Total energy = 6310.9039 kcal/mol (6307.6473 without restraints) Performing minimization step: 385. Total energy = 6297.9352 kcal/mol (6294.6871 without restraints) Performing minimization step: 386. Total energy = 6285.0375 kcal/mol (6281.7978 without restraints) Performing minimization step: 387. Total energy = 6272.2097 kcal/mol (6268.9783 without restraints) Performing minimization step: 388. Total energy = 6259.4512 kcal/mol (6256.2282 without restraints) Performing minimization step: 389. Total energy = 6246.7612 kcal/mol (6243.5462 without restraints) Performing minimization step: 390. Total energy = 6234.1390 kcal/mol (6230.9323 without restraints) Performing minimization step: 391. Total energy = 6221.5842 kcal/mol (6218.3854 without restraints) Performing minimization step: 392. Total energy = 6209.0959 kcal/mol (6205.9051 without restraints) Performing minimization step: 393. Total energy = 6196.6734 kcal/mol (6193.4905 without restraints) Performing minimization step: 394. Total energy = 6184.3164 kcal/mol (6181.1414 without restraints) Performing minimization step: 395. Total energy = 6172.0238 kcal/mol (6168.8564 without restraints) Performing minimization step: 396. Total energy = 6159.7952 kcal/mol (6156.6355 without restraints) Performing minimization step: 397. Total energy = 6147.6300 kcal/mol (6144.4779 without restraints) Performing minimization step: 398. Total energy = 6135.5276 kcal/mol (6132.3831 without restraints) Performing minimization step: 399. Total energy = 6123.4873 kcal/mol (6120.3502 without restraints) Performing minimization step: 400. Total energy = 6111.5088 kcal/mol (6108.3792 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 401. Total energy = 6099.5910 kcal/mol (6096.4686 without restraints) Performing minimization step: 402. Total energy = 6087.7338 kcal/mol (6084.6186 without restraints) Performing minimization step: 403. Total energy = 6075.9366 kcal/mol (6072.8286 without restraints) Performing minimization step: 404. Total energy = 6064.1985 kcal/mol (6061.0977 without restraints) Performing minimization step: 405. Total energy = 6052.5192 kcal/mol (6049.4254 without restraints) Performing minimization step: 406. Total energy = 6040.8982 kcal/mol (6037.8114 without restraints) Performing minimization step: 407. Total energy = 6029.3347 kcal/mol (6026.2548 without restraints) Performing minimization step: 408. Total energy = 6017.8286 kcal/mol (6014.7556 without restraints) Performing minimization step: 409. Total energy = 6006.3786 kcal/mol (6003.3124 without restraints) Performing minimization step: 410. Total energy = 5994.9848 kcal/mol (5991.9251 without restraints) Performing minimization step: 411. Total energy = 5983.6466 kcal/mol (5980.5938 without restraints) Performing minimization step: 412. Total energy = 5972.3637 kcal/mol (5969.3176 without restraints) Performing minimization step: 413. Total energy = 5961.1354 kcal/mol (5958.0958 without restraints) Performing minimization step: 414. Total energy = 5949.9613 kcal/mol (5946.9282 without restraints) Performing minimization step: 415. Total energy = 5938.8408 kcal/mol (5935.8142 without restraints) Performing minimization step: 416. Total energy = 5927.7735 kcal/mol (5924.7533 without restraints) Performing minimization step: 417. Total energy = 5916.7590 kcal/mol (5913.7452 without restraints) Performing minimization step: 418. Total energy = 5905.7969 kcal/mol (5902.7894 without restraints) Performing minimization step: 419. Total energy = 5894.8864 kcal/mol (5891.8852 without restraints) Performing minimization step: 420. Total energy = 5884.0277 kcal/mol (5881.0326 without restraints) Performing minimization step: 421. Total energy = 5873.2194 kcal/mol (5870.2305 without restraints) Performing minimization step: 422. Total energy = 5862.4620 kcal/mol (5859.4791 without restraints) Performing minimization step: 423. Total energy = 5851.7545 kcal/mol (5848.7777 without restraints) Performing minimization step: 424. Total energy = 5841.0966 kcal/mol (5838.1258 without restraints) Performing minimization step: 425. Total energy = 5830.4879 kcal/mol (5827.5230 without restraints) Performing minimization step: 426. Total energy = 5819.9279 kcal/mol (5816.9690 without restraints) Performing minimization step: 427. Total energy = 5809.4166 kcal/mol (5806.4636 without restraints) Performing minimization step: 428. Total energy = 5798.9530 kcal/mol (5796.0057 without restraints) Performing minimization step: 429. Total energy = 5788.5371 kcal/mol (5785.5957 without restraints) Performing minimization step: 430. Total energy = 5778.1687 kcal/mol (5775.2330 without restraints) Performing minimization step: 431. Total energy = 5767.8471 kcal/mol (5764.9170 without restraints) Performing minimization step: 432. Total energy = 5757.5718 kcal/mol (5754.6474 without restraints) Performing minimization step: 433. Total energy = 5747.3427 kcal/mol (5744.4239 without restraints) Performing minimization step: 434. Total energy = 5737.1595 kcal/mol (5734.2462 without restraints) Performing minimization step: 435. Total energy = 5727.0214 kcal/mol (5724.1136 without restraints) Performing minimization step: 436. Total energy = 5716.9287 kcal/mol (5714.0264 without restraints) Performing minimization step: 437. Total energy = 5706.8801 kcal/mol (5703.9832 without restraints) Performing minimization step: 438. Total energy = 5696.8760 kcal/mol (5693.9845 without restraints) Performing minimization step: 439. Total energy = 5686.9160 kcal/mol (5684.0298 without restraints) Performing minimization step: 440. Total energy = 5676.9998 kcal/mol (5674.1190 without restraints) Performing minimization step: 441. Total energy = 5667.1269 kcal/mol (5664.2513 without restraints) Performing minimization step: 442. Total energy = 5657.2969 kcal/mol (5654.4265 without restraints) Performing minimization step: 443. Total energy = 5647.5097 kcal/mol (5644.6445 without restraints) Performing minimization step: 444. Total energy = 5637.7650 kcal/mol (5634.9050 without restraints) Performing minimization step: 445. Total energy = 5628.0626 kcal/mol (5625.2079 without restraints) Performing minimization step: 446. Total energy = 5618.4020 kcal/mol (5615.5523 without restraints) Performing minimization step: 447. Total energy = 5608.7828 kcal/mol (5605.9381 without restraints) Performing minimization step: 448. Total energy = 5599.2046 kcal/mol (5596.3649 without restraints) Performing minimization step: 449. Total energy = 5589.6671 kcal/mol (5586.8324 without restraints) Performing minimization step: 450. Total energy = 5580.1705 kcal/mol (5577.3406 without restraints) Performing minimization step: 451. Total energy = 5570.7135 kcal/mol (5567.8886 without restraints) Performing minimization step: 452. Total energy = 5561.2967 kcal/mol (5558.4768 without restraints) Performing minimization step: 453. Total energy = 5551.9199 kcal/mol (5549.1048 without restraints) Performing minimization step: 454. Total energy = 5542.5821 kcal/mol (5539.7718 without restraints) Performing minimization step: 455. Total energy = 5533.2829 kcal/mol (5530.4772 without restraints) Performing minimization step: 456. Total energy = 5524.0233 kcal/mol (5521.2226 without restraints) Performing minimization step: 457. Total energy = 5514.8023 kcal/mol (5512.0063 without restraints) Performing minimization step: 458. Total energy = 5505.6194 kcal/mol (5502.8281 without restraints) Performing minimization step: 459. Total energy = 5496.4748 kcal/mol (5493.6882 without restraints) Performing minimization step: 460. Total energy = 5487.3680 kcal/mol (5484.5860 without restraints) Performing minimization step: 461. Total energy = 5478.2988 kcal/mol (5475.5214 without restraints) Performing minimization step: 462. Total energy = 5469.2669 kcal/mol (5466.4940 without restraints) Performing minimization step: 463. Total energy = 5460.2721 kcal/mol (5457.5038 without restraints) Performing minimization step: 464. Total energy = 5451.3141 kcal/mol (5448.5503 without restraints) Performing minimization step: 465. Total energy = 5442.3929 kcal/mol (5439.6336 without restraints) Performing minimization step: 466. Total energy = 5433.5080 kcal/mol (5430.7531 without restraints) Performing minimization step: 467. Total energy = 5424.6587 kcal/mol (5421.9083 without restraints) Performing minimization step: 468. Total energy = 5415.8454 kcal/mol (5413.0996 without restraints) Performing minimization step: 469. Total energy = 5407.0680 kcal/mol (5404.3263 without restraints) Performing minimization step: 470. Total energy = 5398.3260 kcal/mol (5395.5888 without restraints) Performing minimization step: 471. Total energy = 5389.6191 kcal/mol (5386.8863 without restraints) Performing minimization step: 472. Total energy = 5380.9474 kcal/mol (5378.2189 without restraints) Performing minimization step: 473. Total energy = 5372.3105 kcal/mol (5369.5862 without restraints) Performing minimization step: 474. Total energy = 5363.7080 kcal/mol (5360.9879 without restraints) Performing minimization step: 475. Total energy = 5355.1397 kcal/mol (5352.4239 without restraints) Performing minimization step: 476. Total energy = 5346.6055 kcal/mol (5343.8940 without restraints) Performing minimization step: 477. Total energy = 5338.1053 kcal/mol (5335.3980 without restraints) Performing minimization step: 478. Total energy = 5329.6386 kcal/mol (5326.9354 without restraints) Performing minimization step: 479. Total energy = 5321.2056 kcal/mol (5318.5066 without restraints) Performing minimization step: 480. Total energy = 5312.8060 kcal/mol (5310.1110 without restraints) Performing minimization step: 481. Total energy = 5304.4392 kcal/mol (5301.7483 without restraints) Performing minimization step: 482. Total energy = 5296.1055 kcal/mol (5293.4187 without restraints) Performing minimization step: 483. Total energy = 5287.8045 kcal/mol (5285.1218 without restraints) Performing minimization step: 484. Total energy = 5279.5359 kcal/mol (5276.8571 without restraints) Performing minimization step: 485. Total energy = 5271.2997 kcal/mol (5268.6250 without restraints) Performing minimization step: 486. Total energy = 5263.0955 kcal/mol (5260.4248 without restraints) Performing minimization step: 487. Total energy = 5254.9234 kcal/mol (5252.2566 without restraints) Performing minimization step: 488. Total energy = 5246.7831 kcal/mol (5244.1203 without restraints) Performing minimization step: 489. Total energy = 5238.6746 kcal/mol (5236.0159 without restraints) Performing minimization step: 490. Total energy = 5230.5978 kcal/mol (5227.9428 without restraints) Performing minimization step: 491. Total energy = 5222.5519 kcal/mol (5219.9008 without restraints) Performing minimization step: 492. Total energy = 5214.5374 kcal/mol (5211.8904 without restraints) Performing minimization step: 493. Total energy = 5206.5538 kcal/mol (5203.9105 without restraints) Performing minimization step: 494. Total energy = 5198.6007 kcal/mol (5195.9612 without restraints) Performing minimization step: 495. Total energy = 5190.6781 kcal/mol (5188.0425 without restraints) Performing minimization step: 496. Total energy = 5182.7862 kcal/mol (5180.1543 without restraints) Performing minimization step: 497. Total energy = 5174.9245 kcal/mol (5172.2964 without restraints) Performing minimization step: 498. Total energy = 5167.0925 kcal/mol (5164.4681 without restraints) Performing minimization step: 499. Total energy = 5159.2905 kcal/mol (5156.6699 without restraints) Performing minimization step: 500. Total energy = 5151.5186 kcal/mol (5148.9016 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 501. Total energy = 5143.7757 kcal/mol (5141.1624 without restraints) Performing minimization step: 502. Total energy = 5136.0626 kcal/mol (5133.4530 without restraints) Performing minimization step: 503. Total energy = 5128.3788 kcal/mol (5125.7730 without restraints) Performing minimization step: 504. Total energy = 5120.7244 kcal/mol (5118.1222 without restraints) Performing minimization step: 505. Total energy = 5113.0986 kcal/mol (5110.4999 without restraints) Performing minimization step: 506. Total energy = 5105.5018 kcal/mol (5102.9068 without restraints) Performing minimization step: 507. Total energy = 5097.9338 kcal/mol (5095.3423 without restraints) Performing minimization step: 508. Total energy = 5090.3940 kcal/mol (5087.8061 without restraints) Performing minimization step: 509. Total energy = 5082.8826 kcal/mol (5080.2983 without restraints) Performing minimization step: 510. Total energy = 5075.3997 kcal/mol (5072.8190 without restraints) Performing minimization step: 511. Total energy = 5067.9449 kcal/mol (5065.3677 without restraints) Performing minimization step: 512. Total energy = 5060.5181 kcal/mol (5057.9444 without restraints) Performing minimization step: 513. Total energy = 5053.1193 kcal/mol (5050.5489 without restraints) Performing minimization step: 514. Total energy = 5045.7479 kcal/mol (5043.1812 without restraints) Performing minimization step: 515. Total energy = 5038.4043 kcal/mol (5035.8410 without restraints) Performing minimization step: 516. Total energy = 5031.0879 kcal/mol (5028.5280 without restraints) Performing minimization step: 517. Total energy = 5023.7987 kcal/mol (5021.2423 without restraints) Performing minimization step: 518. Total energy = 5016.5367 kcal/mol (5013.9837 without restraints) Performing minimization step: 519. Total energy = 5009.3019 kcal/mol (5006.7524 without restraints) Performing minimization step: 520. Total energy = 5002.0941 kcal/mol (4999.5480 without restraints) Performing minimization step: 521. Total energy = 4994.9131 kcal/mol (4992.3703 without restraints) Performing minimization step: 522. Total energy = 4987.7589 kcal/mol (4985.2195 without restraints) Performing minimization step: 523. Total energy = 4980.6307 kcal/mol (4978.0946 without restraints) Performing minimization step: 524. Total energy = 4973.5293 kcal/mol (4970.9966 without restraints) Performing minimization step: 525. Total energy = 4966.4541 kcal/mol (4963.9248 without restraints) Performing minimization step: 526. Total energy = 4959.4052 kcal/mol (4956.8791 without restraints) Performing minimization step: 527. Total energy = 4952.3823 kcal/mol (4949.8595 without restraints) Performing minimization step: 528. Total energy = 4945.3852 kcal/mol (4942.8658 without restraints) Performing minimization step: 529. Total energy = 4938.4140 kcal/mol (4935.8978 without restraints) Performing minimization step: 530. Total energy = 4931.4681 kcal/mol (4928.9551 without restraints) Performing minimization step: 531. Total energy = 4924.5483 kcal/mol (4922.0386 without restraints) Performing minimization step: 532. Total energy = 4917.6540 kcal/mol (4915.1475 without restraints) Performing minimization step: 533. Total energy = 4910.7848 kcal/mol (4908.2816 without restraints) Performing minimization step: 534. Total energy = 4903.9411 kcal/mol (4901.4410 without restraints) Performing minimization step: 535. Total energy = 4897.1221 kcal/mol (4894.6253 without restraints) Performing minimization step: 536. Total energy = 4890.3284 kcal/mol (4887.8347 without restraints) Performing minimization step: 537. Total energy = 4883.5594 kcal/mol (4881.0688 without restraints) Performing minimization step: 538. Total energy = 4876.8152 kcal/mol (4874.3278 without restraints) Performing minimization step: 539. Total energy = 4870.0956 kcal/mol (4867.6114 without restraints) Performing minimization step: 540. Total energy = 4863.4006 kcal/mol (4860.9195 without restraints) Performing minimization step: 541. Total energy = 4856.7299 kcal/mol (4854.2519 without restraints) Performing minimization step: 542. Total energy = 4850.0837 kcal/mol (4847.6088 without restraints) Performing minimization step: 543. Total energy = 4843.4617 kcal/mol (4840.9899 without restraints) Performing minimization step: 544. Total energy = 4836.8639 kcal/mol (4834.3952 without restraints) Performing minimization step: 545. Total energy = 4830.2901 kcal/mol (4827.8245 without restraints) Performing minimization step: 546. Total energy = 4823.7402 kcal/mol (4821.2776 without restraints) Performing minimization step: 547. Total energy = 4817.2142 kcal/mol (4814.7546 without restraints) Performing minimization step: 548. Total energy = 4810.7122 kcal/mol (4808.2557 without restraints) Performing minimization step: 549. Total energy = 4804.2334 kcal/mol (4801.7800 without restraints) Performing minimization step: 550. Total energy = 4797.7782 kcal/mol (4795.3277 without restraints) Performing minimization step: 551. Total energy = 4791.3462 kcal/mol (4788.8987 without restraints) Performing minimization step: 552. Total energy = 4784.9377 kcal/mol (4782.4932 without restraints) Performing minimization step: 553. Total energy = 4778.5520 kcal/mol (4776.1105 without restraints) Performing minimization step: 554. Total energy = 4772.1896 kcal/mol (4769.7511 without restraints) Performing minimization step: 555. Total energy = 4765.8508 kcal/mol (4763.4153 without restraints) Performing minimization step: 556. Total energy = 4759.5346 kcal/mol (4757.1020 without restraints) Performing minimization step: 557. Total energy = 4753.2412 kcal/mol (4750.8115 without restraints) Performing minimization step: 558. Total energy = 4746.9706 kcal/mol (4744.5440 without restraints) Performing minimization step: 559. Total energy = 4740.7229 kcal/mol (4738.2991 without restraints) Performing minimization step: 560. Total energy = 4734.4974 kcal/mol (4732.0765 without restraints) Performing minimization step: 561. Total energy = 4728.2943 kcal/mol (4725.8763 without restraints) Performing minimization step: 562. Total energy = 4722.1138 kcal/mol (4719.6986 without restraints) Performing minimization step: 563. Total energy = 4715.9553 kcal/mol (4713.5430 without restraints) Performing minimization step: 564. Total energy = 4709.8192 kcal/mol (4707.4097 without restraints) Performing minimization step: 565. Total energy = 4703.7050 kcal/mol (4701.2984 without restraints) Performing minimization step: 566. Total energy = 4697.6125 kcal/mol (4695.2088 without restraints) Performing minimization step: 567. Total energy = 4691.5420 kcal/mol (4689.1411 without restraints) Performing minimization step: 568. Total energy = 4685.4935 kcal/mol (4683.0954 without restraints) Performing minimization step: 569. Total energy = 4679.4670 kcal/mol (4677.0718 without restraints) Performing minimization step: 570. Total energy = 4673.4617 kcal/mol (4671.0692 without restraints) Performing minimization step: 571. Total energy = 4667.4783 kcal/mol (4665.0887 without restraints) Performing minimization step: 572. Total energy = 4661.5160 kcal/mol (4659.1292 without restraints) Performing minimization step: 573. Total energy = 4655.5758 kcal/mol (4653.1916 without restraints) Performing minimization step: 574. Total energy = 4649.6562 kcal/mol (4647.2749 without restraints) Performing minimization step: 575. Total energy = 4643.7579 kcal/mol (4641.3794 without restraints) Performing minimization step: 576. Total energy = 4637.8808 kcal/mol (4635.5050 without restraints) Performing minimization step: 577. Total energy = 4632.0246 kcal/mol (4629.6515 without restraints) Performing minimization step: 578. Total energy = 4626.1894 kcal/mol (4623.8191 without restraints) Performing minimization step: 579. Total energy = 4620.3755 kcal/mol (4618.0079 without restraints) Performing minimization step: 580. Total energy = 4614.5822 kcal/mol (4612.2173 without restraints) Performing minimization step: 581. Total energy = 4608.8095 kcal/mol (4606.4474 without restraints) Performing minimization step: 582. Total energy = 4603.0576 kcal/mol (4600.6981 without restraints) Performing minimization step: 583. Total energy = 4597.3258 kcal/mol (4594.9689 without restraints) Performing minimization step: 584. Total energy = 4591.6144 kcal/mol (4589.2603 without restraints) Performing minimization step: 585. Total energy = 4585.9235 kcal/mol (4583.5722 without restraints) Performing minimization step: 586. Total energy = 4580.2529 kcal/mol (4577.9041 without restraints) Performing minimization step: 587. Total energy = 4574.6028 kcal/mol (4572.2566 without restraints) Performing minimization step: 588. Total energy = 4568.9726 kcal/mol (4566.6291 without restraints) Performing minimization step: 589. Total energy = 4563.3621 kcal/mol (4561.0211 without restraints) Performing minimization step: 590. Total energy = 4557.7714 kcal/mol (4555.4331 without restraints) Performing minimization step: 591. Total energy = 4552.2009 kcal/mol (4549.8652 without restraints) Performing minimization step: 592. Total energy = 4546.6501 kcal/mol (4544.3171 without restraints) Performing minimization step: 593. Total energy = 4541.1191 kcal/mol (4538.7886 without restraints) Performing minimization step: 594. Total energy = 4535.6077 kcal/mol (4533.2798 without restraints) Performing minimization step: 595. Total energy = 4530.1158 kcal/mol (4527.7905 without restraints) Performing minimization step: 596. Total energy = 4524.6435 kcal/mol (4522.3207 without restraints) Performing minimization step: 597. Total energy = 4519.1906 kcal/mol (4516.8706 without restraints) Performing minimization step: 598. Total energy = 4513.7569 kcal/mol (4511.4392 without restraints) Performing minimization step: 599. Total energy = 4508.3425 kcal/mol (4506.0274 without restraints) Performing minimization step: 600. Total energy = 4502.9472 kcal/mol (4500.6346 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 601. Total energy = 4497.5710 kcal/mol (4495.2610 without restraints) Performing minimization step: 602. Total energy = 4492.2141 kcal/mol (4489.9066 without restraints) Performing minimization step: 603. Total energy = 4486.8753 kcal/mol (4484.5702 without restraints) Performing minimization step: 604. Total energy = 4481.5558 kcal/mol (4479.2533 without restraints) Performing minimization step: 605. Total energy = 4476.2553 kcal/mol (4473.9553 without restraints) Performing minimization step: 606. Total energy = 4470.9734 kcal/mol (4468.6759 without restraints) Performing minimization step: 607. Total energy = 4465.7104 kcal/mol (4463.4153 without restraints) Performing minimization step: 608. Total energy = 4460.4657 kcal/mol (4458.1731 without restraints) Performing minimization step: 609. Total energy = 4455.2400 kcal/mol (4452.9500 without restraints) Performing minimization step: 610. Total energy = 4450.0324 kcal/mol (4447.7447 without restraints) Performing minimization step: 611. Total energy = 4444.8432 kcal/mol (4442.5580 without restraints) Performing minimization step: 612. Total energy = 4439.6722 kcal/mol (4437.3894 without restraints) Performing minimization step: 613. Total energy = 4434.5192 kcal/mol (4432.2389 without restraints) Performing minimization step: 614. Total energy = 4429.3844 kcal/mol (4427.1066 without restraints) Performing minimization step: 615. Total energy = 4424.2676 kcal/mol (4421.9920 without restraints) Performing minimization step: 616. Total energy = 4419.1688 kcal/mol (4416.8957 without restraints) Performing minimization step: 617. Total energy = 4414.0881 kcal/mol (4411.8174 without restraints) Performing minimization step: 618. Total energy = 4409.0254 kcal/mol (4406.7571 without restraints) Performing minimization step: 619. Total energy = 4403.9799 kcal/mol (4401.7139 without restraints) Performing minimization step: 620. Total energy = 4398.9522 kcal/mol (4396.6888 without restraints) Performing minimization step: 621. Total energy = 4393.9422 kcal/mol (4391.6811 without restraints) Performing minimization step: 622. Total energy = 4388.9497 kcal/mol (4386.6909 without restraints) Performing minimization step: 623. Total energy = 4383.9748 kcal/mol (4381.7184 without restraints) Performing minimization step: 624. Total energy = 4379.0171 kcal/mol (4376.7630 without restraints) Performing minimization step: 625. Total energy = 4374.0767 kcal/mol (4371.8250 without restraints) Performing minimization step: 626. Total energy = 4369.1536 kcal/mol (4366.9042 without restraints) Performing minimization step: 627. Total energy = 4364.2522 kcal/mol (4362.0010 without restraints) Performing minimization step: 628. Total energy = 4359.3594 kcal/mol (4357.1147 without restraints) Performing minimization step: 629. Total energy = 4354.4875 kcal/mol (4352.2450 without restraints) Performing minimization step: 630. Total energy = 4349.6327 kcal/mol (4347.3925 without restraints) Performing minimization step: 631. Total energy = 4344.7948 kcal/mol (4342.5568 without restraints) Performing minimization step: 632. Total energy = 4339.9734 kcal/mol (4337.7378 without restraints) Performing minimization step: 633. Total energy = 4335.1690 kcal/mol (4332.9356 without restraints) Performing minimization step: 634. Total energy = 4330.3816 kcal/mol (4328.1505 without restraints) Performing minimization step: 635. Total energy = 4325.6106 kcal/mol (4323.3816 without restraints) Performing minimization step: 636. Total energy = 4320.8564 kcal/mol (4318.6298 without restraints) Performing minimization step: 637. Total energy = 4316.1182 kcal/mol (4313.8938 without restraints) Performing minimization step: 638. Total energy = 4311.3964 kcal/mol (4309.1742 without restraints) Performing minimization step: 639. Total energy = 4306.6910 kcal/mol (4304.4711 without restraints) Performing minimization step: 640. Total energy = 4302.0018 kcal/mol (4299.7841 without restraints) Performing minimization step: 641. Total energy = 4297.3290 kcal/mol (4295.1136 without restraints) Performing minimization step: 642. Total energy = 4292.6726 kcal/mol (4290.4593 without restraints) Performing minimization step: 643. Total energy = 4288.0322 kcal/mol (4285.8212 without restraints) Performing minimization step: 644. Total energy = 4283.4077 kcal/mol (4281.1989 without restraints) Performing minimization step: 645. Total energy = 4278.7993 kcal/mol (4276.5927 without restraints) Performing minimization step: 646. Total energy = 4274.2068 kcal/mol (4272.0024 without restraints) Performing minimization step: 647. Total energy = 4269.6299 kcal/mol (4267.4276 without restraints) Performing minimization step: 648. Total energy = 4265.0688 kcal/mol (4262.8687 without restraints) Performing minimization step: 649. Total energy = 4260.5234 kcal/mol (4258.3256 without restraints) Performing minimization step: 650. Total energy = 4255.9936 kcal/mol (4253.7978 without restraints) Performing minimization step: 651. Total energy = 4251.4794 kcal/mol (4249.2857 without restraints) Performing minimization step: 652. Total energy = 4246.9805 kcal/mol (4244.7890 without restraints) Performing minimization step: 653. Total energy = 4242.4970 kcal/mol (4240.3076 without restraints) Performing minimization step: 654. Total energy = 4238.0288 kcal/mol (4235.8416 without restraints) Performing minimization step: 655. Total energy = 4233.5759 kcal/mol (4231.3908 without restraints) Performing minimization step: 656. Total energy = 4229.1382 kcal/mol (4226.9552 without restraints) Performing minimization step: 657. Total energy = 4224.7159 kcal/mol (4222.5350 without restraints) Performing minimization step: 658. Total energy = 4220.3086 kcal/mol (4218.1297 without restraints) Performing minimization step: 659. Total energy = 4215.9161 kcal/mol (4213.7393 without restraints) Performing minimization step: 660. Total energy = 4211.5385 kcal/mol (4209.3638 without restraints) Performing minimization step: 661. Total energy = 4207.1756 kcal/mol (4205.0030 without restraints) Performing minimization step: 662. Total energy = 4202.8277 kcal/mol (4200.6572 without restraints) Performing minimization step: 663. Total energy = 4198.4947 kcal/mol (4196.3263 without restraints) Performing minimization step: 664. Total energy = 4194.1762 kcal/mol (4192.0097 without restraints) Performing minimization step: 665. Total energy = 4189.8721 kcal/mol (4187.7078 without restraints) Performing minimization step: 666. Total energy = 4185.5827 kcal/mol (4183.4204 without restraints) Performing minimization step: 667. Total energy = 4181.3081 kcal/mol (4179.1480 without restraints) Performing minimization step: 668. Total energy = 4177.0479 kcal/mol (4174.8897 without restraints) Performing minimization step: 669. Total energy = 4172.8018 kcal/mol (4170.6456 without restraints) Performing minimization step: 670. Total energy = 4168.5702 kcal/mol (4166.4160 without restraints) Performing minimization step: 671. Total energy = 4164.3532 kcal/mol (4162.2009 without restraints) Performing minimization step: 672. Total energy = 4160.1498 kcal/mol (4157.9994 without restraints) Performing minimization step: 673. Total energy = 4155.9605 kcal/mol (4153.8123 without restraints) Performing minimization step: 674. Total energy = 4151.7854 kcal/mol (4149.6391 without restraints) Performing minimization step: 675. Total energy = 4147.6243 kcal/mol (4145.4801 without restraints) Performing minimization step: 676. Total energy = 4143.4772 kcal/mol (4141.3349 without restraints) Performing minimization step: 677. Total energy = 4139.3442 kcal/mol (4137.2039 without restraints) Performing minimization step: 678. Total energy = 4135.2247 kcal/mol (4133.0864 without restraints) Performing minimization step: 679. Total energy = 4131.1190 kcal/mol (4128.9826 without restraints) Performing minimization step: 680. Total energy = 4127.0271 kcal/mol (4124.8927 without restraints) Performing minimization step: 681. Total energy = 4122.9487 kcal/mol (4120.8162 without restraints) Performing minimization step: 682. Total energy = 4118.8841 kcal/mol (4116.7535 without restraints) Performing minimization step: 683. Total energy = 4114.8327 kcal/mol (4112.7041 without restraints) Performing minimization step: 684. Total energy = 4110.7948 kcal/mol (4108.6681 without restraints) Performing minimization step: 685. Total energy = 4106.7702 kcal/mol (4104.6454 without restraints) Performing minimization step: 686. Total energy = 4102.7590 kcal/mol (4100.6361 without restraints) Performing minimization step: 687. Total energy = 4098.7607 kcal/mol (4096.6398 without restraints) Performing minimization step: 688. Total energy = 4094.7759 kcal/mol (4092.6568 without restraints) Performing minimization step: 689. Total energy = 4090.8047 kcal/mol (4088.6875 without restraints) Performing minimization step: 690. Total energy = 4086.8461 kcal/mol (4084.7310 without restraints) Performing minimization step: 691. Total energy = 4082.9006 kcal/mol (4080.7872 without restraints) Performing minimization step: 692. Total energy = 4078.9680 kcal/mol (4076.8564 without restraints) Performing minimization step: 693. Total energy = 4075.0484 kcal/mol (4072.9387 without restraints) Performing minimization step: 694. Total energy = 4071.1414 kcal/mol (4069.0336 without restraints) Performing minimization step: 695. Total energy = 4067.2472 kcal/mol (4065.1413 without restraints) Performing minimization step: 696. Total energy = 4063.3660 kcal/mol (4061.2618 without restraints) Performing minimization step: 697. Total energy = 4059.4974 kcal/mol (4057.3951 without restraints) Performing minimization step: 698. Total energy = 4055.6414 kcal/mol (4053.5409 without restraints) Performing minimization step: 699. Total energy = 4051.7974 kcal/mol (4049.6988 without restraints) Performing minimization step: 700. Total energy = 4047.9662 kcal/mol (4045.8693 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 701. Total energy = 4044.1476 kcal/mol (4042.0526 without restraints) Performing minimization step: 702. Total energy = 4040.3411 kcal/mol (4038.2479 without restraints) Performing minimization step: 703. Total energy = 4036.5472 kcal/mol (4034.4558 without restraints) Performing minimization step: 704. Total energy = 4032.7653 kcal/mol (4030.6757 without restraints) Performing minimization step: 705. Total energy = 4028.9953 kcal/mol (4026.9075 without restraints) Performing minimization step: 706. Total energy = 4025.2377 kcal/mol (4023.1517 without restraints) Performing minimization step: 707. Total energy = 4021.4922 kcal/mol (4019.4080 without restraints) Performing minimization step: 708. Total energy = 4017.7587 kcal/mol (4015.6763 without restraints) Performing minimization step: 709. Total energy = 4014.0369 kcal/mol (4011.9562 without restraints) Performing minimization step: 710. Total energy = 4010.3275 kcal/mol (4008.2486 without restraints) Performing minimization step: 711. Total energy = 4006.6297 kcal/mol (4004.5525 without restraints) Performing minimization step: 712. Total energy = 4002.9440 kcal/mol (4000.8686 without restraints) Performing minimization step: 713. Total energy = 3999.2698 kcal/mol (3997.1960 without restraints) Performing minimization step: 714. Total energy = 3995.6071 kcal/mol (3993.5352 without restraints) Performing minimization step: 715. Total energy = 3991.9559 kcal/mol (3989.8857 without restraints) Performing minimization step: 716. Total energy = 3988.3165 kcal/mol (3986.2480 without restraints) Performing minimization step: 717. Total energy = 3984.6884 kcal/mol (3982.6216 without restraints) Performing minimization step: 718. Total energy = 3981.0721 kcal/mol (3979.0070 without restraints) Performing minimization step: 719. Total energy = 3977.4668 kcal/mol (3975.4035 without restraints) Performing minimization step: 720. Total energy = 3973.8731 kcal/mol (3971.8115 without restraints) Performing minimization step: 721. Total energy = 3970.2907 kcal/mol (3968.2308 without restraints) Performing minimization step: 722. Total energy = 3966.7205 kcal/mol (3964.6622 without restraints) Performing minimization step: 723. Total energy = 3963.1606 kcal/mol (3961.1042 without restraints) Performing minimization step: 724. Total energy = 3959.6122 kcal/mol (3957.5574 without restraints) Performing minimization step: 725. Total energy = 3956.0745 kcal/mol (3954.0213 without restraints) Performing minimization step: 726. Total energy = 3952.5479 kcal/mol (3950.4964 without restraints) Performing minimization step: 727. Total energy = 3949.0323 kcal/mol (3946.9825 without restraints) Performing minimization step: 728. Total energy = 3945.5275 kcal/mol (3943.4793 without restraints) Performing minimization step: 729. Total energy = 3942.0334 kcal/mol (3939.9869 without restraints) Performing minimization step: 730. Total energy = 3938.5501 kcal/mol (3936.5052 without restraints) Performing minimization step: 731. Total energy = 3935.0780 kcal/mol (3933.0347 without restraints) Performing minimization step: 732. Total energy = 3931.6166 kcal/mol (3929.5750 without restraints) Performing minimization step: 733. Total energy = 3928.1656 kcal/mol (3926.1256 without restraints) Performing minimization step: 734. Total energy = 3924.7255 kcal/mol (3922.6872 without restraints) Performing minimization step: 735. Total energy = 3921.2956 kcal/mol (3919.2589 without restraints) Performing minimization step: 736. Total energy = 3917.8763 kcal/mol (3915.8412 without restraints) Performing minimization step: 737. Total energy = 3914.4678 kcal/mol (3912.4343 without restraints) Performing minimization step: 738. Total energy = 3911.0692 kcal/mol (3909.0373 without restraints) Performing minimization step: 739. Total energy = 3907.6807 kcal/mol (3905.6503 without restraints) Performing minimization step: 740. Total energy = 3904.3023 kcal/mol (3902.2735 without restraints) Performing minimization step: 741. Total energy = 3900.9345 kcal/mol (3898.9073 without restraints) Performing minimization step: 742. Total energy = 3897.5770 kcal/mol (3895.5515 without restraints) Performing minimization step: 743. Total energy = 3894.2296 kcal/mol (3892.2057 without restraints) Performing minimization step: 744. Total energy = 3890.8925 kcal/mol (3888.8702 without restraints) Performing minimization step: 745. Total energy = 3887.5653 kcal/mol (3885.5446 without restraints) Performing minimization step: 746. Total energy = 3884.2484 kcal/mol (3882.2292 without restraints) Performing minimization step: 747. Total energy = 3880.9414 kcal/mol (3878.9238 without restraints) Performing minimization step: 748. Total energy = 3877.6441 kcal/mol (3875.6280 without restraints) Performing minimization step: 749. Total energy = 3874.3566 kcal/mol (3872.3421 without restraints) Performing minimization step: 750. Total energy = 3871.0792 kcal/mol (3869.0663 without restraints) Performing minimization step: 751. Total energy = 3867.8114 kcal/mol (3865.8000 without restraints) Performing minimization step: 752. Total energy = 3864.5533 kcal/mol (3862.5434 without restraints) Performing minimization step: 753. Total energy = 3861.3051 kcal/mol (3859.2968 without restraints) Performing minimization step: 754. Total energy = 3858.0658 kcal/mol (3856.0589 without restraints) Performing minimization step: 755. Total energy = 3854.8362 kcal/mol (3852.8309 without restraints) Performing minimization step: 756. Total energy = 3851.6164 kcal/mol (3849.6126 without restraints) Performing minimization step: 757. Total energy = 3848.4061 kcal/mol (3846.4038 without restraints) Performing minimization step: 758. Total energy = 3845.2053 kcal/mol (3843.2045 without restraints) Performing minimization step: 759. Total energy = 3842.0140 kcal/mol (3840.0147 without restraints) Performing minimization step: 760. Total energy = 3838.8318 kcal/mol (3836.8340 without restraints) Performing minimization step: 761. Total energy = 3835.6590 kcal/mol (3833.6628 without restraints) Performing minimization step: 762. Total energy = 3832.4954 kcal/mol (3830.5006 without restraints) Performing minimization step: 763. Total energy = 3829.3408 kcal/mol (3827.3474 without restraints) Performing minimization step: 764. Total energy = 3826.1954 kcal/mol (3824.2036 without restraints) Performing minimization step: 765. Total energy = 3823.0590 kcal/mol (3821.0688 without restraints) Performing minimization step: 766. Total energy = 3819.9319 kcal/mol (3817.9431 without restraints) Performing minimization step: 767. Total energy = 3816.8142 kcal/mol (3814.8268 without restraints) Performing minimization step: 768. Total energy = 3813.7051 kcal/mol (3811.7191 without restraints) Performing minimization step: 769. Total energy = 3810.6049 kcal/mol (3808.6204 without restraints) Performing minimization step: 770. Total energy = 3807.5138 kcal/mol (3805.5307 without restraints) Performing minimization step: 771. Total energy = 3804.4314 kcal/mol (3802.4498 without restraints) Performing minimization step: 772. Total energy = 3801.3577 kcal/mol (3799.3775 without restraints) Performing minimization step: 773. Total energy = 3798.2928 kcal/mol (3796.3141 without restraints) Performing minimization step: 774. Total energy = 3795.2365 kcal/mol (3793.2592 without restraints) Performing minimization step: 775. Total energy = 3792.1890 kcal/mol (3790.2131 without restraints) Performing minimization step: 776. Total energy = 3789.1501 kcal/mol (3787.1757 without restraints) Performing minimization step: 777. Total energy = 3786.1197 kcal/mol (3784.1467 without restraints) Performing minimization step: 778. Total energy = 3783.0977 kcal/mol (3781.1261 without restraints) Performing minimization step: 779. Total energy = 3780.0847 kcal/mol (3778.1145 without restraints) Performing minimization step: 780. Total energy = 3777.0799 kcal/mol (3775.1112 without restraints) Performing minimization step: 781. Total energy = 3774.0836 kcal/mol (3772.1162 without restraints) Performing minimization step: 782. Total energy = 3771.0958 kcal/mol (3769.1299 without restraints) Performing minimization step: 783. Total energy = 3768.1159 kcal/mol (3766.1513 without restraints) Performing minimization step: 784. Total energy = 3765.1443 kcal/mol (3763.1812 without restraints) Performing minimization step: 785. Total energy = 3762.1814 kcal/mol (3760.2197 without restraints) Performing minimization step: 786. Total energy = 3759.2268 kcal/mol (3757.2664 without restraints) Performing minimization step: 787. Total energy = 3756.2801 kcal/mol (3754.3211 without restraints) Performing minimization step: 788. Total energy = 3753.3415 kcal/mol (3751.3839 without restraints) Performing minimization step: 789. Total energy = 3750.4111 kcal/mol (3748.4549 without restraints) Performing minimization step: 790. Total energy = 3747.4888 kcal/mol (3745.5339 without restraints) Performing minimization step: 791. Total energy = 3744.5745 kcal/mol (3742.6210 without restraints) Performing minimization step: 792. Total energy = 3741.6682 kcal/mol (3739.7161 without restraints) Performing minimization step: 793. Total energy = 3738.7697 kcal/mol (3736.8188 without restraints) Performing minimization step: 794. Total energy = 3735.8790 kcal/mol (3733.9296 without restraints) Performing minimization step: 795. Total energy = 3732.9964 kcal/mol (3731.0483 without restraints) Performing minimization step: 796. Total energy = 3730.1219 kcal/mol (3728.1752 without restraints) Performing minimization step: 797. Total energy = 3727.2550 kcal/mol (3725.3096 without restraints) Performing minimization step: 798. Total energy = 3724.3960 kcal/mol (3722.4520 without restraints) Performing minimization step: 799. Total energy = 3721.5447 kcal/mol (3719.6020 without restraints) Performing minimization step: 800. Total energy = 3718.7012 kcal/mol (3716.7598 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 801. Total energy = 3715.8650 kcal/mol (3713.9250 without restraints) Performing minimization step: 802. Total energy = 3713.0365 kcal/mol (3711.0978 without restraints) Performing minimization step: 803. Total energy = 3710.2156 kcal/mol (3708.2782 without restraints) Performing minimization step: 804. Total energy = 3707.4023 kcal/mol (3705.4664 without restraints) Performing minimization step: 805. Total energy = 3704.5965 kcal/mol (3702.6618 without restraints) Performing minimization step: 806. Total energy = 3701.7981 kcal/mol (3699.8647 without restraints) Performing minimization step: 807. Total energy = 3699.0071 kcal/mol (3697.0750 without restraints) Performing minimization step: 808. Total energy = 3696.2236 kcal/mol (3694.2928 without restraints) Performing minimization step: 809. Total energy = 3693.4471 kcal/mol (3691.5174 without restraints) Performing minimization step: 810. Total energy = 3690.6780 kcal/mol (3688.7498 without restraints) Performing minimization step: 811. Total energy = 3687.9167 kcal/mol (3685.9898 without restraints) Performing minimization step: 812. Total energy = 3685.1624 kcal/mol (3683.2367 without restraints) Performing minimization step: 813. Total energy = 3682.4150 kcal/mol (3680.4907 without restraints) Performing minimization step: 814. Total energy = 3679.6753 kcal/mol (3677.7522 without restraints) Performing minimization step: 815. Total energy = 3676.9426 kcal/mol (3675.0208 without restraints) Performing minimization step: 816. Total energy = 3674.2167 kcal/mol (3672.2962 without restraints) Performing minimization step: 817. Total energy = 3671.4987 kcal/mol (3669.5795 without restraints) Performing minimization step: 818. Total energy = 3668.7872 kcal/mol (3666.8693 without restraints) Performing minimization step: 819. Total energy = 3666.0827 kcal/mol (3664.1661 without restraints) Performing minimization step: 820. Total energy = 3663.3852 kcal/mol (3661.4698 without restraints) Performing minimization step: 821. Total energy = 3660.6948 kcal/mol (3658.7807 without restraints) Performing minimization step: 822. Total energy = 3658.0113 kcal/mol (3656.0984 without restraints) Performing minimization step: 823. Total energy = 3655.3349 kcal/mol (3653.4232 without restraints) Performing minimization step: 824. Total energy = 3652.6651 kcal/mol (3650.7547 without restraints) Performing minimization step: 825. Total energy = 3650.0023 kcal/mol (3648.0932 without restraints) Performing minimization step: 826. Total energy = 3647.3462 kcal/mol (3645.4383 without restraints) Performing minimization step: 827. Total energy = 3644.6970 kcal/mol (3642.7904 without restraints) Performing minimization step: 828. Total energy = 3642.0544 kcal/mol (3640.1490 without restraints) Performing minimization step: 829. Total energy = 3639.4185 kcal/mol (3637.5144 without restraints) Performing minimization step: 830. Total energy = 3636.7897 kcal/mol (3634.8868 without restraints) Performing minimization step: 831. Total energy = 3634.1672 kcal/mol (3632.2655 without restraints) Performing minimization step: 832. Total energy = 3631.5510 kcal/mol (3629.6506 without restraints) Performing minimization step: 833. Total energy = 3628.9417 kcal/mol (3627.0424 without restraints) Performing minimization step: 834. Total energy = 3626.3391 kcal/mol (3624.4411 without restraints) Performing minimization step: 835. Total energy = 3623.7428 kcal/mol (3621.8460 without restraints) Performing minimization step: 836. Total energy = 3621.1531 kcal/mol (3619.2575 without restraints) Performing minimization step: 837. Total energy = 3618.5697 kcal/mol (3616.6754 without restraints) Performing minimization step: 838. Total energy = 3615.9931 kcal/mol (3614.0999 without restraints) Performing minimization step: 839. Total energy = 3613.4227 kcal/mol (3611.5307 without restraints) Performing minimization step: 840. Total energy = 3610.8587 kcal/mol (3608.9680 without restraints) Performing minimization step: 841. Total energy = 3608.3012 kcal/mol (3606.4117 without restraints) Performing minimization step: 842. Total energy = 3605.7496 kcal/mol (3603.8613 without restraints) Performing minimization step: 843. Total energy = 3603.2046 kcal/mol (3601.3175 without restraints) Performing minimization step: 844. Total energy = 3600.6657 kcal/mol (3598.7799 without restraints) Performing minimization step: 845. Total energy = 3598.1333 kcal/mol (3596.2486 without restraints) Performing minimization step: 846. Total energy = 3595.6070 kcal/mol (3593.7235 without restraints) Performing minimization step: 847. Total energy = 3593.0869 kcal/mol (3591.2046 without restraints) Performing minimization step: 848. Total energy = 3590.5727 kcal/mol (3588.6916 without restraints) Performing minimization step: 849. Total energy = 3588.0648 kcal/mol (3586.1848 without restraints) Performing minimization step: 850. Total energy = 3585.5628 kcal/mol (3583.6840 without restraints) Performing minimization step: 851. Total energy = 3583.0671 kcal/mol (3581.1895 without restraints) Performing minimization step: 852. Total energy = 3580.5776 kcal/mol (3578.7011 without restraints) Performing minimization step: 853. Total energy = 3578.0940 kcal/mol (3576.2188 without restraints) Performing minimization step: 854. Total energy = 3575.6166 kcal/mol (3573.7426 without restraints) Performing minimization step: 855. Total energy = 3573.1451 kcal/mol (3571.2722 without restraints) Performing minimization step: 856. Total energy = 3570.6795 kcal/mol (3568.8077 without restraints) Performing minimization step: 857. Total energy = 3568.2198 kcal/mol (3566.3492 without restraints) Performing minimization step: 858. Total energy = 3565.7659 kcal/mol (3563.8965 without restraints) Performing minimization step: 859. Total energy = 3563.3180 kcal/mol (3561.4498 without restraints) Performing minimization step: 860. Total energy = 3560.8759 kcal/mol (3559.0088 without restraints) Performing minimization step: 861. Total energy = 3558.4395 kcal/mol (3556.5735 without restraints) Performing minimization step: 862. Total energy = 3556.0093 kcal/mol (3554.1445 without restraints) Performing minimization step: 863. Total energy = 3553.5846 kcal/mol (3551.7210 without restraints) Performing minimization step: 864. Total energy = 3551.1658 kcal/mol (3549.3033 without restraints) Performing minimization step: 865. Total energy = 3548.7530 kcal/mol (3546.8918 without restraints) Performing minimization step: 866. Total energy = 3546.3454 kcal/mol (3544.4853 without restraints) Performing minimization step: 867. Total energy = 3543.9436 kcal/mol (3542.0846 without restraints) Performing minimization step: 868. Total energy = 3541.5477 kcal/mol (3539.6898 without restraints) Performing minimization step: 869. Total energy = 3539.1571 kcal/mol (3537.3004 without restraints) Performing minimization step: 870. Total energy = 3536.7721 kcal/mol (3534.9165 without restraints) Performing minimization step: 871. Total energy = 3534.3929 kcal/mol (3532.5386 without restraints) Performing minimization step: 872. Total energy = 3532.0193 kcal/mol (3530.1659 without restraints) Performing minimization step: 873. Total energy = 3529.6512 kcal/mol (3527.7992 without restraints) Performing minimization step: 874. Total energy = 3527.2887 kcal/mol (3525.4376 without restraints) Performing minimization step: 875. Total energy = 3524.9310 kcal/mol (3523.0810 without restraints) Performing minimization step: 876. Total energy = 3522.5790 kcal/mol (3520.7301 without restraints) Performing minimization step: 877. Total energy = 3520.2327 kcal/mol (3518.3849 without restraints) Performing minimization step: 878. Total energy = 3517.8919 kcal/mol (3516.0453 without restraints) Performing minimization step: 879. Total energy = 3515.5564 kcal/mol (3513.7109 without restraints) Performing minimization step: 880. Total energy = 3513.2261 kcal/mol (3511.3816 without restraints) Performing minimization step: 881. Total energy = 3510.9011 kcal/mol (3509.0578 without restraints) Performing minimization step: 882. Total energy = 3508.5816 kcal/mol (3506.7394 without restraints) Performing minimization step: 883. Total energy = 3506.2674 kcal/mol (3504.4262 without restraints) Performing minimization step: 884. Total energy = 3503.9584 kcal/mol (3502.1184 without restraints) Performing minimization step: 885. Total energy = 3501.6547 kcal/mol (3499.8158 without restraints) Performing minimization step: 886. Total energy = 3499.3563 kcal/mol (3497.5185 without restraints) Performing minimization step: 887. Total energy = 3497.0630 kcal/mol (3495.2263 without restraints) Performing minimization step: 888. Total energy = 3494.7751 kcal/mol (3492.9394 without restraints) Performing minimization step: 889. Total energy = 3492.4921 kcal/mol (3490.6577 without restraints) Performing minimization step: 890. Total energy = 3490.2145 kcal/mol (3488.3811 without restraints) Performing minimization step: 891. Total energy = 3487.9419 kcal/mol (3486.1097 without restraints) Performing minimization step: 892. Total energy = 3485.6745 kcal/mol (3483.8433 without restraints) Performing minimization step: 893. Total energy = 3483.4120 kcal/mol (3481.5819 without restraints) Performing minimization step: 894. Total energy = 3481.1547 kcal/mol (3479.3257 without restraints) Performing minimization step: 895. Total energy = 3478.9025 kcal/mol (3477.0746 without restraints) Performing minimization step: 896. Total energy = 3476.6555 kcal/mol (3474.8287 without restraints) Performing minimization step: 897. Total energy = 3474.4133 kcal/mol (3472.5875 without restraints) Performing minimization step: 898. Total energy = 3472.1759 kcal/mol (3470.3514 without restraints) Performing minimization step: 899. Total energy = 3469.9434 kcal/mol (3468.1198 without restraints) Performing minimization step: 900. Total energy = 3467.7163 kcal/mol (3465.8938 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 901. Total energy = 3465.4945 kcal/mol (3463.6731 without restraints) Performing minimization step: 902. Total energy = 3463.2775 kcal/mol (3461.4572 without restraints) Performing minimization step: 903. Total energy = 3461.0652 kcal/mol (3459.2459 without restraints) Performing minimization step: 904. Total energy = 3458.8577 kcal/mol (3457.0395 without restraints) Performing minimization step: 905. Total energy = 3456.6549 kcal/mol (3454.8377 without restraints) Performing minimization step: 906. Total energy = 3454.4569 kcal/mol (3452.6408 without restraints) Performing minimization step: 907. Total energy = 3452.2638 kcal/mol (3450.4488 without restraints) Performing minimization step: 908. Total energy = 3450.0752 kcal/mol (3448.2613 without restraints) Performing minimization step: 909. Total energy = 3447.8915 kcal/mol (3446.0787 without restraints) Performing minimization step: 910. Total energy = 3445.7127 kcal/mol (3443.9009 without restraints) Performing minimization step: 911. Total energy = 3443.5381 kcal/mol (3441.7274 without restraints) Performing minimization step: 912. Total energy = 3441.3688 kcal/mol (3439.5591 without restraints) Performing minimization step: 913. Total energy = 3439.2040 kcal/mol (3437.3953 without restraints) Performing minimization step: 914. Total energy = 3437.0439 kcal/mol (3435.2364 without restraints) Performing minimization step: 915. Total energy = 3434.8886 kcal/mol (3433.0820 without restraints) Performing minimization step: 916. Total energy = 3432.7376 kcal/mol (3430.9321 without restraints) Performing minimization step: 917. Total energy = 3430.5917 kcal/mol (3428.7875 without restraints) Performing minimization step: 918. Total energy = 3428.4500 kcal/mol (3426.6466 without restraints) Performing minimization step: 919. Total energy = 3426.3130 kcal/mol (3424.5107 without restraints) Performing minimization step: 920. Total energy = 3424.1810 kcal/mol (3422.3798 without restraints) Performing minimization step: 921. Total energy = 3422.0532 kcal/mol (3420.2528 without restraints) Performing minimization step: 922. Total energy = 3419.9298 kcal/mol (3418.1306 without restraints) Performing minimization step: 923. Total energy = 3417.8110 kcal/mol (3416.0129 without restraints) Performing minimization step: 924. Total energy = 3415.6968 kcal/mol (3413.8997 without restraints) Performing minimization step: 925. Total energy = 3413.5870 kcal/mol (3411.7908 without restraints) Performing minimization step: 926. Total energy = 3411.4818 kcal/mol (3409.6867 without restraints) Performing minimization step: 927. Total energy = 3409.3812 kcal/mol (3407.5871 without restraints) Performing minimization step: 928. Total energy = 3407.2846 kcal/mol (3405.4917 without restraints) Performing minimization step: 929. Total energy = 3405.1929 kcal/mol (3403.4009 without restraints) Performing minimization step: 930. Total energy = 3403.1053 kcal/mol (3401.3145 without restraints) Performing minimization step: 931. Total energy = 3401.0224 kcal/mol (3399.2326 without restraints) Performing minimization step: 932. Total energy = 3398.9436 kcal/mol (3397.1547 without restraints) Performing minimization step: 933. Total energy = 3396.8690 kcal/mol (3395.0812 without restraints) Performing minimization step: 934. Total energy = 3394.7988 kcal/mol (3393.0120 without restraints) Performing minimization step: 935. Total energy = 3392.7326 kcal/mol (3390.9468 without restraints) Performing minimization step: 936. Total energy = 3390.6708 kcal/mol (3388.8859 without restraints) Performing minimization step: 937. Total energy = 3388.6134 kcal/mol (3386.8297 without restraints) Performing minimization step: 938. Total energy = 3386.5603 kcal/mol (3384.7775 without restraints) Performing minimization step: 939. Total energy = 3384.5114 kcal/mol (3382.7296 without restraints) Performing minimization step: 940. Total energy = 3382.4664 kcal/mol (3380.6857 without restraints) Performing minimization step: 941. Total energy = 3380.4259 kcal/mol (3378.6462 without restraints) Performing minimization step: 942. Total energy = 3378.3896 kcal/mol (3376.6108 without restraints) Performing minimization step: 943. Total energy = 3376.3572 kcal/mol (3374.5795 without restraints) Performing minimization step: 944. Total energy = 3374.3293 kcal/mol (3372.5526 without restraints) Performing minimization step: 945. Total energy = 3372.3056 kcal/mol (3370.5300 without restraints) Performing minimization step: 946. Total energy = 3370.2859 kcal/mol (3368.5113 without restraints) Performing minimization step: 947. Total energy = 3368.2705 kcal/mol (3366.4969 without restraints) Performing minimization step: 948. Total energy = 3366.2591 kcal/mol (3364.4864 without restraints) Performing minimization step: 949. Total energy = 3364.2516 kcal/mol (3362.4800 without restraints) Performing minimization step: 950. Total energy = 3362.2485 kcal/mol (3360.4779 without restraints) Performing minimization step: 951. Total energy = 3360.2496 kcal/mol (3358.4800 without restraints) Performing minimization step: 952. Total energy = 3358.2544 kcal/mol (3356.4857 without restraints) Performing minimization step: 953. Total energy = 3356.2632 kcal/mol (3354.4956 without restraints) Performing minimization step: 954. Total energy = 3354.2761 kcal/mol (3352.5094 without restraints) Performing minimization step: 955. Total energy = 3352.2928 kcal/mol (3350.5272 without restraints) Performing minimization step: 956. Total energy = 3350.3134 kcal/mol (3348.5488 without restraints) Performing minimization step: 957. Total energy = 3348.3380 kcal/mol (3346.5744 without restraints) Performing minimization step: 958. Total energy = 3346.3666 kcal/mol (3344.6039 without restraints) Performing minimization step: 959. Total energy = 3344.3987 kcal/mol (3342.6369 without restraints) Performing minimization step: 960. Total energy = 3342.4351 kcal/mol (3340.6745 without restraints) Performing minimization step: 961. Total energy = 3340.4756 kcal/mol (3338.7160 without restraints) Performing minimization step: 962. Total energy = 3338.5200 kcal/mol (3336.7613 without restraints) Performing minimization step: 963. Total energy = 3336.5682 kcal/mol (3334.8104 without restraints) Performing minimization step: 964. Total energy = 3334.6200 kcal/mol (3332.8632 without restraints) Performing minimization step: 965. Total energy = 3332.6755 kcal/mol (3330.9197 without restraints) Performing minimization step: 966. Total energy = 3330.7353 kcal/mol (3328.9806 without restraints) Performing minimization step: 967. Total energy = 3328.7987 kcal/mol (3327.0449 without restraints) Performing minimization step: 968. Total energy = 3326.8657 kcal/mol (3325.1127 without restraints) Performing minimization step: 969. Total energy = 3324.9364 kcal/mol (3323.1845 without restraints) Performing minimization step: 970. Total energy = 3323.0107 kcal/mol (3321.2598 without restraints) Performing minimization step: 971. Total energy = 3321.0890 kcal/mol (3319.3391 without restraints) Performing minimization step: 972. Total energy = 3319.1712 kcal/mol (3317.4223 without restraints) Performing minimization step: 973. Total energy = 3317.2570 kcal/mol (3315.5090 without restraints) Performing minimization step: 974. Total energy = 3315.3467 kcal/mol (3313.5997 without restraints) Performing minimization step: 975. Total energy = 3313.4398 kcal/mol (3311.6937 without restraints) Performing minimization step: 976. Total energy = 3311.5364 kcal/mol (3309.7913 without restraints) Performing minimization step: 977. Total energy = 3309.6370 kcal/mol (3307.8929 without restraints) Performing minimization step: 978. Total energy = 3307.7408 kcal/mol (3305.9977 without restraints) Performing minimization step: 979. Total energy = 3305.8488 kcal/mol (3304.1066 without restraints) Performing minimization step: 980. Total energy = 3303.9601 kcal/mol (3302.2189 without restraints) Performing minimization step: 981. Total energy = 3302.0752 kcal/mol (3300.3349 without restraints) Performing minimization step: 982. Total energy = 3300.1936 kcal/mol (3298.4542 without restraints) Performing minimization step: 983. Total energy = 3298.3156 kcal/mol (3296.5772 without restraints) Performing minimization step: 984. Total energy = 3296.4412 kcal/mol (3294.7039 without restraints) Performing minimization step: 985. Total energy = 3294.5704 kcal/mol (3292.8339 without restraints) Performing minimization step: 986. Total energy = 3292.7028 kcal/mol (3290.9674 without restraints) Performing minimization step: 987. Total energy = 3290.8394 kcal/mol (3289.1049 without restraints) Performing minimization step: 988. Total energy = 3288.9789 kcal/mol (3287.2453 without restraints) Performing minimization step: 989. Total energy = 3287.1219 kcal/mol (3285.3892 without restraints) Performing minimization step: 990. Total energy = 3285.2684 kcal/mol (3283.5366 without restraints) Performing minimization step: 991. Total energy = 3283.4183 kcal/mol (3281.6876 without restraints) Performing minimization step: 992. Total energy = 3281.5718 kcal/mol (3279.8421 without restraints) Performing minimization step: 993. Total energy = 3279.7290 kcal/mol (3278.0002 without restraints) Performing minimization step: 994. Total energy = 3277.8896 kcal/mol (3276.1617 without restraints) Performing minimization step: 995. Total energy = 3276.0535 kcal/mol (3274.3266 without restraints) Performing minimization step: 996. Total energy = 3274.2204 kcal/mol (3272.4945 without restraints) Performing minimization step: 997. Total energy = 3272.3909 kcal/mol (3270.6659 without restraints) Performing minimization step: 998. Total energy = 3270.5648 kcal/mol (3268.8407 without restraints) Performing minimization step: 999. Total energy = 3268.7422 kcal/mol (3267.0191 without restraints) Performing minimization step: 1000. Total energy = 3266.9228 kcal/mol (3265.2006 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 3265.1069 kcal/mol (3263.3857 without restraints) Performing minimization step: 1002. Total energy = 3263.2942 kcal/mol (3261.5739 without restraints) Performing minimization step: 1003. Total energy = 3261.4845 kcal/mol (3259.7651 without restraints) Performing minimization step: 1004. Total energy = 3259.6782 kcal/mol (3257.9598 without restraints) Performing minimization step: 1005. Total energy = 3257.8753 kcal/mol (3256.1577 without restraints) Performing minimization step: 1006. Total energy = 3256.0757 kcal/mol (3254.3591 without restraints) Performing minimization step: 1007. Total energy = 3254.2794 kcal/mol (3252.5638 without restraints) Performing minimization step: 1008. Total energy = 3252.4862 kcal/mol (3250.7715 without restraints) Performing minimization step: 1009. Total energy = 3250.6963 kcal/mol (3248.9825 without restraints) Performing minimization step: 1010. Total energy = 3248.9094 kcal/mol (3247.1965 without restraints) Performing minimization step: 1011. Total energy = 3247.1259 kcal/mol (3245.4140 without restraints) Performing minimization step: 1012. Total energy = 3245.3456 kcal/mol (3243.6346 without restraints) Performing minimization step: 1013. Total energy = 3243.5681 kcal/mol (3241.8580 without restraints) Performing minimization step: 1014. Total energy = 3241.7939 kcal/mol (3240.0848 without restraints) Performing minimization step: 1015. Total energy = 3240.0227 kcal/mol (3238.3144 without restraints) Performing minimization step: 1016. Total energy = 3238.2548 kcal/mol (3236.5475 without restraints) Performing minimization step: 1017. Total energy = 3236.4901 kcal/mol (3234.7838 without restraints) Performing minimization step: 1018. Total energy = 3234.7285 kcal/mol (3233.0231 without restraints) Performing minimization step: 1019. Total energy = 3232.9701 kcal/mol (3231.2656 without restraints) Performing minimization step: 1020. Total energy = 3231.2145 kcal/mol (3229.5109 without restraints) Performing minimization step: 1021. Total energy = 3229.4626 kcal/mol (3227.7601 without restraints) Performing minimization step: 1022. Total energy = 3227.7135 kcal/mol (3226.0118 without restraints) Performing minimization step: 1023. Total energy = 3225.9672 kcal/mol (3224.2663 without restraints) Performing minimization step: 1024. Total energy = 3224.2238 kcal/mol (3222.5239 without restraints) Performing minimization step: 1025. Total energy = 3222.4835 kcal/mol (3220.7844 without restraints) Performing minimization step: 1026. Total energy = 3220.7464 kcal/mol (3219.0483 without restraints) Performing minimization step: 1027. Total energy = 3219.0120 kcal/mol (3217.3146 without restraints) Performing minimization step: 1028. Total energy = 3217.2805 kcal/mol (3215.5842 without restraints) Performing minimization step: 1029. Total energy = 3215.5523 kcal/mol (3213.8569 without restraints) Performing minimization step: 1030. Total energy = 3213.8268 kcal/mol (3212.1323 without restraints) Performing minimization step: 1031. Total energy = 3212.1043 kcal/mol (3210.4107 without restraints) Performing minimization step: 1032. Total energy = 3210.3847 kcal/mol (3208.6920 without restraints) Performing minimization step: 1033. Total energy = 3208.6679 kcal/mol (3206.9762 without restraints) Performing minimization step: 1034. Total energy = 3206.9544 kcal/mol (3205.2635 without restraints) Performing minimization step: 1035. Total energy = 3205.2434 kcal/mol (3203.5535 without restraints) Performing minimization step: 1036. Total energy = 3203.5352 kcal/mol (3201.8460 without restraints) Performing minimization step: 1037. Total energy = 3201.8297 kcal/mol (3200.1415 without restraints) Performing minimization step: 1038. Total energy = 3200.1273 kcal/mol (3198.4400 without restraints) Performing minimization step: 1039. Total energy = 3198.4279 kcal/mol (3196.7415 without restraints) Performing minimization step: 1040. Total energy = 3196.7315 kcal/mol (3195.0460 without restraints) Performing minimization step: 1041. Total energy = 3195.0375 kcal/mol (3193.3529 without restraints) Performing minimization step: 1042. Total energy = 3193.3466 kcal/mol (3191.6629 without restraints) Performing minimization step: 1043. Total energy = 3191.6583 kcal/mol (3189.9755 without restraints) Performing minimization step: 1044. Total energy = 3189.9728 kcal/mol (3188.2909 without restraints) Performing minimization step: 1045. Total energy = 3188.2901 kcal/mol (3186.6092 without restraints) Performing minimization step: 1046. Total energy = 3186.6104 kcal/mol (3184.9303 without restraints) Performing minimization step: 1047. Total energy = 3184.9333 kcal/mol (3183.2540 without restraints) Performing minimization step: 1048. Total energy = 3183.2587 kcal/mol (3181.5804 without restraints) Performing minimization step: 1049. Total energy = 3181.5871 kcal/mol (3179.9096 without restraints) Performing minimization step: 1050. Total energy = 3179.9180 kcal/mol (3178.2414 without restraints) Performing minimization step: 1051. Total energy = 3178.2518 kcal/mol (3176.5762 without restraints) Performing minimization step: 1052. Total energy = 3176.5882 kcal/mol (3174.9133 without restraints) Performing minimization step: 1053. Total energy = 3174.9272 kcal/mol (3173.2533 without restraints) Performing minimization step: 1054. Total energy = 3173.2689 kcal/mol (3171.5959 without restraints) Performing minimization step: 1055. Total energy = 3171.6132 kcal/mol (3169.9410 without restraints) Performing minimization step: 1056. Total energy = 3169.9600 kcal/mol (3168.2888 without restraints) Performing minimization step: 1057. Total energy = 3168.3096 kcal/mol (3166.6391 without restraints) Performing minimization step: 1058. Total energy = 3166.6617 kcal/mol (3164.9922 without restraints) Performing minimization step: 1059. Total energy = 3165.0165 kcal/mol (3163.3478 without restraints) Performing minimization step: 1060. Total energy = 3163.3738 kcal/mol (3161.7061 without restraints) Performing minimization step: 1061. Total energy = 3161.7338 kcal/mol (3160.0669 without restraints) Performing minimization step: 1062. Total energy = 3160.0963 kcal/mol (3158.4303 without restraints) Performing minimization step: 1063. Total energy = 3158.4617 kcal/mol (3156.7967 without restraints) Performing minimization step: 1064. Total energy = 3156.8295 kcal/mol (3155.1652 without restraints) Performing minimization step: 1065. Total energy = 3155.1997 kcal/mol (3153.5363 without restraints) Performing minimization step: 1066. Total energy = 3153.5724 kcal/mol (3151.9098 without restraints) Performing minimization step: 1067. Total energy = 3151.9475 kcal/mol (3150.2857 without restraints) Performing minimization step: 1068. Total energy = 3150.3250 kcal/mol (3148.6642 without restraints) Performing minimization step: 1069. Total energy = 3148.7053 kcal/mol (3147.0455 without restraints) Performing minimization step: 1070. Total energy = 3147.0879 kcal/mol (3145.4288 without restraints) Performing minimization step: 1071. Total energy = 3145.4733 kcal/mol (3143.8151 without restraints) Performing minimization step: 1072. Total energy = 3143.8609 kcal/mol (3142.2036 without restraints) Performing minimization step: 1073. Total energy = 3142.2510 kcal/mol (3140.5945 without restraints) Performing minimization step: 1074. Total energy = 3140.6435 kcal/mol (3138.9879 without restraints) Performing minimization step: 1075. Total energy = 3139.0385 kcal/mol (3137.3837 without restraints) Performing minimization step: 1076. Total energy = 3137.4356 kcal/mol (3135.7817 without restraints) Performing minimization step: 1077. Total energy = 3135.8353 kcal/mol (3134.1823 without restraints) Performing minimization step: 1078. Total energy = 3134.2377 kcal/mol (3132.5855 without restraints) Performing minimization step: 1079. Total energy = 3132.6425 kcal/mol (3130.9911 without restraints) Performing minimization step: 1080. Total energy = 3131.0492 kcal/mol (3129.3987 without restraints) Performing minimization step: 1081. Total energy = 3129.4582 kcal/mol (3127.8085 without restraints) Performing minimization step: 1082. Total energy = 3127.8698 kcal/mol (3126.2210 without restraints) Performing minimization step: 1083. Total energy = 3126.2836 kcal/mol (3124.6357 without restraints) Performing minimization step: 1084. Total energy = 3124.6999 kcal/mol (3123.0528 without restraints) Performing minimization step: 1085. Total energy = 3123.1188 kcal/mol (3121.4725 without restraints) Performing minimization step: 1086. Total energy = 3121.5397 kcal/mol (3119.8943 without restraints) Performing minimization step: 1087. Total energy = 3119.9630 kcal/mol (3118.3184 without restraints) Performing minimization step: 1088. Total energy = 3118.3885 kcal/mol (3116.7448 without restraints) Performing minimization step: 1089. Total energy = 3116.8163 kcal/mol (3115.1735 without restraints) Performing minimization step: 1090. Total energy = 3115.2464 kcal/mol (3113.6044 without restraints) Performing minimization step: 1091. Total energy = 3113.6789 kcal/mol (3112.0378 without restraints) Performing minimization step: 1092. Total energy = 3112.1135 kcal/mol (3110.4732 without restraints) Performing minimization step: 1093. Total energy = 3110.5503 kcal/mol (3108.9108 without restraints) Performing minimization step: 1094. Total energy = 3108.9894 kcal/mol (3107.3508 without restraints) Performing minimization step: 1095. Total energy = 3107.4305 kcal/mol (3105.7927 without restraints) Performing minimization step: 1096. Total energy = 3105.8740 kcal/mol (3104.2370 without restraints) Performing minimization step: 1097. Total energy = 3104.3201 kcal/mol (3102.6840 without restraints) Performing minimization step: 1098. Total energy = 3102.7682 kcal/mol (3101.1329 without restraints) Performing minimization step: 1099. Total energy = 3101.2182 kcal/mol (3099.5836 without restraints) Performing minimization step: 1100. Total energy = 3099.6703 kcal/mol (3098.0367 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 3098.1247 kcal/mol (3096.4919 without restraints) Performing minimization step: 1102. Total energy = 3096.5812 kcal/mol (3094.9493 without restraints) Performing minimization step: 1103. Total energy = 3095.0401 kcal/mol (3093.4090 without restraints) Performing minimization step: 1104. Total energy = 3093.5009 kcal/mol (3091.8707 without restraints) Performing minimization step: 1105. Total energy = 3091.9639 kcal/mol (3090.3345 without restraints) Performing minimization step: 1106. Total energy = 3090.4291 kcal/mol (3088.8005 without restraints) Performing minimization step: 1107. Total energy = 3088.8964 kcal/mol (3087.2686 without restraints) Performing minimization step: 1108. Total energy = 3087.3655 kcal/mol (3085.7384 without restraints) Performing minimization step: 1109. Total energy = 3085.8366 kcal/mol (3084.2105 without restraints) Performing minimization step: 1110. Total energy = 3084.3099 kcal/mol (3082.6846 without restraints) Performing minimization step: 1111. Total energy = 3082.7854 kcal/mol (3081.1609 without restraints) Performing minimization step: 1112. Total energy = 3081.2628 kcal/mol (3079.6391 without restraints) Performing minimization step: 1113. Total energy = 3079.7423 kcal/mol (3078.1194 without restraints) Performing minimization step: 1114. Total energy = 3078.2238 kcal/mol (3076.6019 without restraints) Performing minimization step: 1115. Total energy = 3076.7079 kcal/mol (3075.0867 without restraints) Performing minimization step: 1116. Total energy = 3075.1937 kcal/mol (3073.5733 without restraints) Performing minimization step: 1117. Total energy = 3073.6812 kcal/mol (3072.0616 without restraints) Performing minimization step: 1118. Total energy = 3072.1709 kcal/mol (3070.5522 without restraints) Performing minimization step: 1119. Total energy = 3070.6621 kcal/mol (3069.0442 without restraints) Performing minimization step: 1120. Total energy = 3069.1556 kcal/mol (3067.5385 without restraints) Performing minimization step: 1121. Total energy = 3067.6511 kcal/mol (3066.0348 without restraints) Performing minimization step: 1122. Total energy = 3066.1487 kcal/mol (3064.5332 without restraints) Performing minimization step: 1123. Total energy = 3064.6478 kcal/mol (3063.0331 without restraints) Performing minimization step: 1124. Total energy = 3063.1488 kcal/mol (3061.5349 without restraints) Performing minimization step: 1125. Total energy = 3061.6520 kcal/mol (3060.0389 without restraints) Performing minimization step: 1126. Total energy = 3060.1573 kcal/mol (3058.5450 without restraints) Performing minimization step: 1127. Total energy = 3058.6643 kcal/mol (3057.0529 without restraints) Performing minimization step: 1128. Total energy = 3057.1735 kcal/mol (3055.5629 without restraints) Performing minimization step: 1129. Total energy = 3055.6843 kcal/mol (3054.0745 without restraints) Performing minimization step: 1130. Total energy = 3054.1972 kcal/mol (3052.5882 without restraints) Performing minimization step: 1131. Total energy = 3052.7120 kcal/mol (3051.1038 without restraints) Performing minimization step: 1132. Total energy = 3051.2284 kcal/mol (3049.6210 without restraints) Performing minimization step: 1133. Total energy = 3049.7467 kcal/mol (3048.1401 without restraints) Performing minimization step: 1134. Total energy = 3048.2672 kcal/mol (3046.6614 without restraints) Performing minimization step: 1135. Total energy = 3046.7894 kcal/mol (3045.1844 without restraints) Performing minimization step: 1136. Total energy = 3045.3134 kcal/mol (3043.7092 without restraints) Performing minimization step: 1137. Total energy = 3043.8390 kcal/mol (3042.2356 without restraints) Performing minimization step: 1138. Total energy = 3042.3669 kcal/mol (3040.7642 without restraints) Performing minimization step: 1139. Total energy = 3040.8963 kcal/mol (3039.2945 without restraints) Performing minimization step: 1140. Total energy = 3039.4277 kcal/mol (3037.8266 without restraints) Performing minimization step: 1141. Total energy = 3037.9602 kcal/mol (3036.3600 without restraints) Performing minimization step: 1142. Total energy = 3036.4948 kcal/mol (3034.8954 without restraints) Performing minimization step: 1143. Total energy = 3035.0318 kcal/mol (3033.4332 without restraints) Performing minimization step: 1144. Total energy = 3033.5700 kcal/mol (3031.9723 without restraints) Performing minimization step: 1145. Total energy = 3032.1098 kcal/mol (3030.5128 without restraints) Performing minimization step: 1146. Total energy = 3030.6514 kcal/mol (3029.0551 without restraints) Performing minimization step: 1147. Total energy = 3029.1947 kcal/mol (3027.5992 without restraints) Performing minimization step: 1148. Total energy = 3027.7399 kcal/mol (3026.1452 without restraints) Performing minimization step: 1149. Total energy = 3026.2866 kcal/mol (3024.6927 without restraints) Performing minimization step: 1150. Total energy = 3024.8350 kcal/mol (3023.2419 without restraints) Performing minimization step: 1151. Total energy = 3023.3851 kcal/mol (3021.7928 without restraints) Performing minimization step: 1152. Total energy = 3021.9371 kcal/mol (3020.3455 without restraints) Performing minimization step: 1153. Total energy = 3020.4906 kcal/mol (3018.8998 without restraints) Performing minimization step: 1154. Total energy = 3019.0457 kcal/mol (3017.4557 without restraints) Performing minimization step: 1155. Total energy = 3017.6025 kcal/mol (3016.0133 without restraints) Performing minimization step: 1156. Total energy = 3016.1611 kcal/mol (3014.5726 without restraints) Performing minimization step: 1157. Total energy = 3014.7215 kcal/mol (3013.1339 without restraints) Performing minimization step: 1158. Total energy = 3013.2833 kcal/mol (3011.6964 without restraints) Performing minimization step: 1159. Total energy = 3011.8470 kcal/mol (3010.2609 without restraints) Performing minimization step: 1160. Total energy = 3010.4120 kcal/mol (3008.8266 without restraints) Performing minimization step: 1161. Total energy = 3008.9786 kcal/mol (3007.3941 without restraints) Performing minimization step: 1162. Total energy = 3007.5468 kcal/mol (3005.9630 without restraints) Performing minimization step: 1163. Total energy = 3006.1169 kcal/mol (3004.5339 without restraints) Performing minimization step: 1164. Total energy = 3004.6884 kcal/mol (3003.1062 without restraints) Performing minimization step: 1165. Total energy = 3003.2614 kcal/mol (3001.6799 without restraints) Performing minimization step: 1166. Total energy = 3001.8361 kcal/mol (3000.2554 without restraints) Performing minimization step: 1167. Total energy = 3000.4125 kcal/mol (2998.8325 without restraints) Performing minimization step: 1168. Total energy = 2998.9902 kcal/mol (2997.4111 without restraints) Performing minimization step: 1169. Total energy = 2997.5696 kcal/mol (2995.9912 without restraints) Performing minimization step: 1170. Total energy = 2996.1502 kcal/mol (2994.5725 without restraints) Performing minimization step: 1171. Total energy = 2994.7326 kcal/mol (2993.1557 without restraints) Performing minimization step: 1172. Total energy = 2993.3166 kcal/mol (2991.7405 without restraints) Performing minimization step: 1173. Total energy = 2991.9021 kcal/mol (2990.3267 without restraints) Performing minimization step: 1174. Total energy = 2990.4891 kcal/mol (2988.9145 without restraints) Performing minimization step: 1175. Total energy = 2989.0778 kcal/mol (2987.5040 without restraints) Performing minimization step: 1176. Total energy = 2987.6679 kcal/mol (2986.0948 without restraints) Performing minimization step: 1177. Total energy = 2986.2594 kcal/mol (2984.6871 without restraints) Performing minimization step: 1178. Total energy = 2984.8522 kcal/mol (2983.2807 without restraints) Performing minimization step: 1179. Total energy = 2983.4466 kcal/mol (2981.8759 without restraints) Performing minimization step: 1180. Total energy = 2982.0426 kcal/mol (2980.4726 without restraints) Performing minimization step: 1181. Total energy = 2980.6404 kcal/mol (2979.0711 without restraints) Performing minimization step: 1182. Total energy = 2979.2392 kcal/mol (2977.6707 without restraints) Performing minimization step: 1183. Total energy = 2977.8395 kcal/mol (2976.2716 without restraints) Performing minimization step: 1184. Total energy = 2976.4411 kcal/mol (2974.8742 without restraints) Performing minimization step: 1185. Total energy = 2975.0443 kcal/mol (2973.4781 without restraints) Performing minimization step: 1186. Total energy = 2973.6490 kcal/mol (2972.0835 without restraints) Performing minimization step: 1187. Total energy = 2972.2550 kcal/mol (2970.6903 without restraints) Performing minimization step: 1188. Total energy = 2970.8625 kcal/mol (2969.2985 without restraints) Performing minimization step: 1189. Total energy = 2969.4712 kcal/mol (2967.9080 without restraints) Performing minimization step: 1190. Total energy = 2968.0811 kcal/mol (2966.5186 without restraints) Performing minimization step: 1191. Total energy = 2966.6928 kcal/mol (2965.1310 without restraints) Performing minimization step: 1192. Total energy = 2965.3059 kcal/mol (2963.7448 without restraints) Performing minimization step: 1193. Total energy = 2963.9203 kcal/mol (2962.3601 without restraints) Performing minimization step: 1194. Total energy = 2962.5362 kcal/mol (2960.9766 without restraints) Performing minimization step: 1195. Total energy = 2961.1534 kcal/mol (2959.5946 without restraints) Performing minimization step: 1196. Total energy = 2959.7722 kcal/mol (2958.2141 without restraints) Performing minimization step: 1197. Total energy = 2958.3921 kcal/mol (2956.8348 without restraints) Performing minimization step: 1198. Total energy = 2957.0134 kcal/mol (2955.4568 without restraints) Performing minimization step: 1199. Total energy = 2955.6357 kcal/mol (2954.0798 without restraints) Performing minimization step: 1200. Total energy = 2954.2595 kcal/mol (2952.7044 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 2952.8846 kcal/mol (2951.3302 without restraints) Performing minimization step: 1202. Total energy = 2951.5112 kcal/mol (2949.9576 without restraints) Performing minimization step: 1203. Total energy = 2950.1391 kcal/mol (2948.5863 without restraints) Performing minimization step: 1204. Total energy = 2948.7682 kcal/mol (2947.2160 without restraints) Performing minimization step: 1205. Total energy = 2947.3987 kcal/mol (2945.8473 without restraints) Performing minimization step: 1206. Total energy = 2946.0305 kcal/mol (2944.4799 without restraints) Performing minimization step: 1207. Total energy = 2944.6637 kcal/mol (2943.1137 without restraints) Performing minimization step: 1208. Total energy = 2943.2979 kcal/mol (2941.7487 without restraints) Performing minimization step: 1209. Total energy = 2941.9338 kcal/mol (2940.3853 without restraints) Performing minimization step: 1210. Total energy = 2940.5705 kcal/mol (2939.0228 without restraints) Performing minimization step: 1211. Total energy = 2939.2087 kcal/mol (2937.6617 without restraints) Performing minimization step: 1212. Total energy = 2937.8485 kcal/mol (2936.3022 without restraints) Performing minimization step: 1213. Total energy = 2936.4894 kcal/mol (2934.9439 without restraints) Performing minimization step: 1214. Total energy = 2935.1315 kcal/mol (2933.5867 without restraints) Performing minimization step: 1215. Total energy = 2933.7748 kcal/mol (2932.2307 without restraints) Performing minimization step: 1216. Total energy = 2932.4193 kcal/mol (2930.8759 without restraints) Performing minimization step: 1217. Total energy = 2931.0654 kcal/mol (2929.5226 without restraints) Performing minimization step: 1218. Total energy = 2929.7122 kcal/mol (2928.1703 without restraints) Performing minimization step: 1219. Total energy = 2928.3604 kcal/mol (2926.8192 without restraints) Performing minimization step: 1220. Total energy = 2927.0098 kcal/mol (2925.4693 without restraints) Performing minimization step: 1221. Total energy = 2925.6602 kcal/mol (2924.1204 without restraints) Performing minimization step: 1222. Total energy = 2924.3119 kcal/mol (2922.7729 without restraints) Performing minimization step: 1223. Total energy = 2922.9649 kcal/mol (2921.4266 without restraints) Performing minimization step: 1224. Total energy = 2921.6192 kcal/mol (2920.0816 without restraints) Performing minimization step: 1225. Total energy = 2920.2746 kcal/mol (2918.7377 without restraints) Performing minimization step: 1226. Total energy = 2918.9309 kcal/mol (2917.3947 without restraints) Performing minimization step: 1227. Total energy = 2917.5888 kcal/mol (2916.0534 without restraints) Performing minimization step: 1228. Total energy = 2916.2480 kcal/mol (2914.7133 without restraints) Performing minimization step: 1229. Total energy = 2914.9079 kcal/mol (2913.3739 without restraints) Performing minimization step: 1230. Total energy = 2913.5690 kcal/mol (2912.0358 without restraints) Performing minimization step: 1231. Total energy = 2912.2316 kcal/mol (2910.6989 without restraints) Performing minimization step: 1232. Total energy = 2910.8951 kcal/mol (2909.3632 without restraints) Performing minimization step: 1233. Total energy = 2909.5598 kcal/mol (2908.0286 without restraints) Performing minimization step: 1234. Total energy = 2908.2257 kcal/mol (2906.6952 without restraints) Performing minimization step: 1235. Total energy = 2906.8926 kcal/mol (2905.3628 without restraints) Performing minimization step: 1236. Total energy = 2905.5607 kcal/mol (2904.0317 without restraints) Performing minimization step: 1237. Total energy = 2904.2299 kcal/mol (2902.7016 without restraints) Performing minimization step: 1238. Total energy = 2902.9002 kcal/mol (2901.3726 without restraints) Performing minimization step: 1239. Total energy = 2901.5717 kcal/mol (2900.0447 without restraints) Performing minimization step: 1240. Total energy = 2900.2447 kcal/mol (2898.7184 without restraints) Performing minimization step: 1241. Total energy = 2898.9186 kcal/mol (2897.3930 without restraints) Performing minimization step: 1242. Total energy = 2897.5934 kcal/mol (2896.0685 without restraints) Performing minimization step: 1243. Total energy = 2896.2695 kcal/mol (2894.7454 without restraints) Performing minimization step: 1244. Total energy = 2894.9465 kcal/mol (2893.4231 without restraints) Performing minimization step: 1245. Total energy = 2893.6241 kcal/mol (2892.1014 without restraints) Performing minimization step: 1246. Total energy = 2892.3033 kcal/mol (2890.7813 without restraints) Performing minimization step: 1247. Total energy = 2890.9835 kcal/mol (2889.4622 without restraints) Performing minimization step: 1248. Total energy = 2889.6648 kcal/mol (2888.1441 without restraints) Performing minimization step: 1249. Total energy = 2888.3472 kcal/mol (2886.8272 without restraints) Performing minimization step: 1250. Total energy = 2887.0306 kcal/mol (2885.5113 without restraints) Performing minimization step: 1251. Total energy = 2885.7150 kcal/mol (2884.1965 without restraints) Performing minimization step: 1252. Total energy = 2884.4007 kcal/mol (2882.8829 without restraints) Performing minimization step: 1253. Total energy = 2883.0873 kcal/mol (2881.5702 without restraints) Performing minimization step: 1254. Total energy = 2881.7749 kcal/mol (2880.2585 without restraints) Performing minimization step: 1255. Total energy = 2880.4636 kcal/mol (2878.9478 without restraints) Performing minimization step: 1256. Total energy = 2879.1534 kcal/mol (2877.6384 without restraints) Performing minimization step: 1257. Total energy = 2877.8440 kcal/mol (2876.3296 without restraints) Performing minimization step: 1258. Total energy = 2876.5357 kcal/mol (2875.0220 without restraints) Performing minimization step: 1259. Total energy = 2875.2290 kcal/mol (2873.7160 without restraints) Performing minimization step: 1260. Total energy = 2873.9228 kcal/mol (2872.4105 without restraints) Performing minimization step: 1261. Total energy = 2872.6176 kcal/mol (2871.1060 without restraints) Performing minimization step: 1262. Total energy = 2871.3130 kcal/mol (2869.8021 without restraints) Performing minimization step: 1263. Total energy = 2870.0099 kcal/mol (2868.4996 without restraints) Performing minimization step: 1264. Total energy = 2868.7076 kcal/mol (2867.1980 without restraints) Performing minimization step: 1265. Total energy = 2867.4064 kcal/mol (2865.8976 without restraints) Performing minimization step: 1266. Total energy = 2866.1063 kcal/mol (2864.5981 without restraints) Performing minimization step: 1267. Total energy = 2864.8071 kcal/mol (2863.2996 without restraints) Performing minimization step: 1268. Total energy = 2863.5087 kcal/mol (2862.0018 without restraints) Performing minimization step: 1269. Total energy = 2862.2115 kcal/mol (2860.7055 without restraints) Performing minimization step: 1270. Total energy = 2860.9156 kcal/mol (2859.4101 without restraints) Performing minimization step: 1271. Total energy = 2859.6205 kcal/mol (2858.1157 without restraints) Performing minimization step: 1272. Total energy = 2858.3263 kcal/mol (2856.8222 without restraints) Performing minimization step: 1273. Total energy = 2857.0332 kcal/mol (2855.5297 without restraints) Performing minimization step: 1274. Total energy = 2855.7409 kcal/mol (2854.2381 without restraints) Performing minimization step: 1275. Total energy = 2854.4495 kcal/mol (2852.9474 without restraints) Performing minimization step: 1276. Total energy = 2853.1591 kcal/mol (2851.6576 without restraints) Performing minimization step: 1277. Total energy = 2851.8696 kcal/mol (2850.3689 without restraints) Performing minimization step: 1278. Total energy = 2850.5811 kcal/mol (2849.0809 without restraints) Performing minimization step: 1279. Total energy = 2849.2933 kcal/mol (2847.7940 without restraints) Performing minimization step: 1280. Total energy = 2848.0067 kcal/mol (2846.5080 without restraints) Performing minimization step: 1281. Total energy = 2846.7211 kcal/mol (2845.2231 without restraints) Performing minimization step: 1282. Total energy = 2845.4364 kcal/mol (2843.9390 without restraints) Performing minimization step: 1283. Total energy = 2844.1523 kcal/mol (2842.6556 without restraints) Performing minimization step: 1284. Total energy = 2842.8694 kcal/mol (2841.3734 without restraints) Performing minimization step: 1285. Total energy = 2841.5878 kcal/mol (2840.0925 without restraints) Performing minimization step: 1286. Total energy = 2840.3070 kcal/mol (2838.8124 without restraints) Performing minimization step: 1287. Total energy = 2839.0267 kcal/mol (2837.5327 without restraints) Performing minimization step: 1288. Total energy = 2837.7478 kcal/mol (2836.2544 without restraints) Performing minimization step: 1289. Total energy = 2836.4696 kcal/mol (2834.9769 without restraints) Performing minimization step: 1290. Total energy = 2835.1924 kcal/mol (2833.7005 without restraints) Performing minimization step: 1291. Total energy = 2833.9160 kcal/mol (2832.4247 without restraints) Performing minimization step: 1292. Total energy = 2832.6405 kcal/mol (2831.1499 without restraints) Performing minimization step: 1293. Total energy = 2831.3660 kcal/mol (2829.8760 without restraints) Performing minimization step: 1294. Total energy = 2830.0927 kcal/mol (2828.6034 without restraints) Performing minimization step: 1295. Total energy = 2828.8199 kcal/mol (2827.3312 without restraints) Performing minimization step: 1296. Total energy = 2827.5480 kcal/mol (2826.0600 without restraints) Performing minimization step: 1297. Total energy = 2826.2770 kcal/mol (2824.7897 without restraints) Performing minimization step: 1298. Total energy = 2825.0069 kcal/mol (2823.5202 without restraints) Performing minimization step: 1299. Total energy = 2823.7378 kcal/mol (2822.2519 without restraints) Performing minimization step: 1300. Total energy = 2822.4697 kcal/mol (2820.9844 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 2821.2022 kcal/mol (2819.7174 without restraints) Performing minimization step: 1302. Total energy = 2819.9355 kcal/mol (2818.4512 without restraints) Performing minimization step: 1303. Total energy = 2818.6697 kcal/mol (2817.1864 without restraints) Performing minimization step: 1304. Total energy = 2817.4049 kcal/mol (2815.9222 without restraints) Performing minimization step: 1305. Total energy = 2816.1408 kcal/mol (2814.6587 without restraints) Performing minimization step: 1306. Total energy = 2814.8777 kcal/mol (2813.3964 without restraints) Performing minimization step: 1307. Total energy = 2813.6155 kcal/mol (2812.1348 without restraints) Performing minimization step: 1308. Total energy = 2812.3545 kcal/mol (2810.8744 without restraints) Performing minimization step: 1309. Total energy = 2811.0944 kcal/mol (2809.6149 without restraints) Performing minimization step: 1310. Total energy = 2809.8348 kcal/mol (2808.3560 without restraints) Performing minimization step: 1311. Total energy = 2808.5760 kcal/mol (2807.0979 without restraints) Performing minimization step: 1312. Total energy = 2807.3181 kcal/mol (2805.8407 without restraints) Performing minimization step: 1313. Total energy = 2806.0611 kcal/mol (2804.5843 without restraints) Performing minimization step: 1314. Total energy = 2804.8047 kcal/mol (2803.3285 without restraints) Performing minimization step: 1315. Total energy = 2803.5494 kcal/mol (2802.0739 without restraints) Performing minimization step: 1316. Total energy = 2802.2950 kcal/mol (2800.8202 without restraints) Performing minimization step: 1317. Total energy = 2801.0414 kcal/mol (2799.5673 without restraints) Performing minimization step: 1318. Total energy = 2799.7883 kcal/mol (2798.3147 without restraints) Performing minimization step: 1319. Total energy = 2798.5363 kcal/mol (2797.0634 without restraints) Performing minimization step: 1320. Total energy = 2797.2853 kcal/mol (2795.8132 without restraints) Performing minimization step: 1321. Total energy = 2796.0352 kcal/mol (2794.5636 without restraints) Performing minimization step: 1322. Total energy = 2794.7860 kcal/mol (2793.3150 without restraints) Performing minimization step: 1323. Total energy = 2793.5374 kcal/mol (2792.0671 without restraints) Performing minimization step: 1324. Total energy = 2792.2897 kcal/mol (2790.8200 without restraints) Performing minimization step: 1325. Total energy = 2791.0426 kcal/mol (2789.5736 without restraints) Performing minimization step: 1326. Total energy = 2789.7965 kcal/mol (2788.3281 without restraints) Performing minimization step: 1327. Total energy = 2788.5512 kcal/mol (2787.0835 without restraints) Performing minimization step: 1328. Total energy = 2787.3069 kcal/mol (2785.8398 without restraints) Performing minimization step: 1329. Total energy = 2786.0633 kcal/mol (2784.5968 without restraints) Performing minimization step: 1330. Total energy = 2784.8205 kcal/mol (2783.3547 without restraints) Performing minimization step: 1331. Total energy = 2783.5782 kcal/mol (2782.1130 without restraints) Performing minimization step: 1332. Total energy = 2782.3370 kcal/mol (2780.8725 without restraints) Performing minimization step: 1333. Total energy = 2781.0966 kcal/mol (2779.6326 without restraints) Performing minimization step: 1334. Total energy = 2779.8570 kcal/mol (2778.3938 without restraints) Performing minimization step: 1335. Total energy = 2778.6183 kcal/mol (2777.1558 without restraints) Performing minimization step: 1336. Total energy = 2777.3805 kcal/mol (2775.9186 without restraints) Performing minimization step: 1337. Total energy = 2776.1435 kcal/mol (2774.6822 without restraints) Performing minimization step: 1338. Total energy = 2774.9073 kcal/mol (2773.4467 without restraints) Performing minimization step: 1339. Total energy = 2773.6715 kcal/mol (2772.2115 without restraints) Performing minimization step: 1340. Total energy = 2772.4369 kcal/mol (2770.9775 without restraints) Performing minimization step: 1341. Total energy = 2771.2031 kcal/mol (2769.7443 without restraints) Performing minimization step: 1342. Total energy = 2769.9701 kcal/mol (2768.5120 without restraints) Performing minimization step: 1343. Total energy = 2768.7384 kcal/mol (2767.2810 without restraints) Performing minimization step: 1344. Total energy = 2767.5071 kcal/mol (2766.0503 without restraints) Performing minimization step: 1345. Total energy = 2766.2768 kcal/mol (2764.8206 without restraints) Performing minimization step: 1346. Total energy = 2765.0470 kcal/mol (2763.5915 without restraints) Performing minimization step: 1347. Total energy = 2763.8185 kcal/mol (2762.3636 without restraints) Performing minimization step: 1348. Total energy = 2762.5903 kcal/mol (2761.1360 without restraints) Performing minimization step: 1349. Total energy = 2761.3631 kcal/mol (2759.9093 without restraints) Performing minimization step: 1350. Total energy = 2760.1364 kcal/mol (2758.6834 without restraints) Performing minimization step: 1351. Total energy = 2758.9111 kcal/mol (2757.4587 without restraints) Performing minimization step: 1352. Total energy = 2757.6862 kcal/mol (2756.2344 without restraints) Performing minimization step: 1353. Total energy = 2756.4620 kcal/mol (2755.0109 without restraints) Performing minimization step: 1354. Total energy = 2755.2386 kcal/mol (2753.7882 without restraints) Performing minimization step: 1355. Total energy = 2754.0162 kcal/mol (2752.5665 without restraints) Performing minimization step: 1356. Total energy = 2752.7946 kcal/mol (2751.3453 without restraints) Performing minimization step: 1357. Total energy = 2751.5738 kcal/mol (2750.1252 without restraints) Performing minimization step: 1358. Total energy = 2750.3538 kcal/mol (2748.9059 without restraints) Performing minimization step: 1359. Total energy = 2749.1346 kcal/mol (2747.6872 without restraints) Performing minimization step: 1360. Total energy = 2747.9161 kcal/mol (2746.4695 without restraints) Performing minimization step: 1361. Total energy = 2746.6985 kcal/mol (2745.2524 without restraints) Performing minimization step: 1362. Total energy = 2745.4817 kcal/mol (2744.0362 without restraints) Performing minimization step: 1363. Total energy = 2744.2655 kcal/mol (2742.8206 without restraints) Performing minimization step: 1364. Total energy = 2743.0500 kcal/mol (2741.6058 without restraints) Performing minimization step: 1365. Total energy = 2741.8358 kcal/mol (2740.3922 without restraints) Performing minimization step: 1366. Total energy = 2740.6220 kcal/mol (2739.1790 without restraints) Performing minimization step: 1367. Total energy = 2739.4091 kcal/mol (2737.9668 without restraints) Performing minimization step: 1368. Total energy = 2738.1969 kcal/mol (2736.7552 without restraints) Performing minimization step: 1369. Total energy = 2736.9854 kcal/mol (2735.5444 without restraints) Performing minimization step: 1370. Total energy = 2735.7748 kcal/mol (2734.3343 without restraints) Performing minimization step: 1371. Total energy = 2734.5647 kcal/mol (2733.1249 without restraints) Performing minimization step: 1372. Total energy = 2733.3560 kcal/mol (2731.9168 without restraints) Performing minimization step: 1373. Total energy = 2732.1477 kcal/mol (2730.7091 without restraints) Performing minimization step: 1374. Total energy = 2730.9402 kcal/mol (2729.5022 without restraints) Performing minimization step: 1375. Total energy = 2729.7334 kcal/mol (2728.2961 without restraints) Performing minimization step: 1376. Total energy = 2728.5276 kcal/mol (2727.0911 without restraints) Performing minimization step: 1377. Total energy = 2727.3226 kcal/mol (2725.8865 without restraints) Performing minimization step: 1378. Total energy = 2726.1186 kcal/mol (2724.6832 without restraints) Performing minimization step: 1379. Total energy = 2724.9151 kcal/mol (2723.4803 without restraints) Performing minimization step: 1380. Total energy = 2723.7123 kcal/mol (2722.2781 without restraints) Performing minimization step: 1381. Total energy = 2722.5103 kcal/mol (2721.0767 without restraints) Performing minimization step: 1382. Total energy = 2721.3091 kcal/mol (2719.8761 without restraints) Performing minimization step: 1383. Total energy = 2720.1086 kcal/mol (2718.6762 without restraints) Performing minimization step: 1384. Total energy = 2718.9090 kcal/mol (2717.4773 without restraints) Performing minimization step: 1385. Total energy = 2717.7101 kcal/mol (2716.2790 without restraints) Performing minimization step: 1386. Total energy = 2716.5121 kcal/mol (2715.0816 without restraints) Performing minimization step: 1387. Total energy = 2715.3148 kcal/mol (2713.8850 without restraints) Performing minimization step: 1388. Total energy = 2714.1184 kcal/mol (2712.6891 without restraints) Performing minimization step: 1389. Total energy = 2712.9227 kcal/mol (2711.4941 without restraints) Performing minimization step: 1390. Total energy = 2711.7279 kcal/mol (2710.2998 without restraints) Performing minimization step: 1391. Total energy = 2710.5337 kcal/mol (2709.1063 without restraints) Performing minimization step: 1392. Total energy = 2709.3401 kcal/mol (2707.9132 without restraints) Performing minimization step: 1393. Total energy = 2708.1475 kcal/mol (2706.7214 without restraints) Performing minimization step: 1394. Total energy = 2706.9560 kcal/mol (2705.5304 without restraints) Performing minimization step: 1395. Total energy = 2705.7650 kcal/mol (2704.3401 without restraints) Performing minimization step: 1396. Total energy = 2704.5751 kcal/mol (2703.1508 without restraints) Performing minimization step: 1397. Total energy = 2703.3858 kcal/mol (2701.9621 without restraints) Performing minimization step: 1398. Total energy = 2702.1972 kcal/mol (2700.7742 without restraints) Performing minimization step: 1399. Total energy = 2701.0097 kcal/mol (2699.5872 without restraints) Performing minimization step: 1400. Total energy = 2699.8225 kcal/mol (2698.4007 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 2698.6363 kcal/mol (2697.2151 without restraints) Performing minimization step: 1402. Total energy = 2697.4510 kcal/mol (2696.0303 without restraints) Performing minimization step: 1403. Total energy = 2696.2663 kcal/mol (2694.8463 without restraints) Performing minimization step: 1404. Total energy = 2695.0829 kcal/mol (2693.6635 without restraints) Performing minimization step: 1405. Total energy = 2693.8999 kcal/mol (2692.4811 without restraints) Performing minimization step: 1406. Total energy = 2692.7178 kcal/mol (2691.2997 without restraints) Performing minimization step: 1407. Total energy = 2691.5365 kcal/mol (2690.1189 without restraints) Performing minimization step: 1408. Total energy = 2690.3559 kcal/mol (2688.9389 without restraints) Performing minimization step: 1409. Total energy = 2689.1763 kcal/mol (2687.7600 without restraints) Performing minimization step: 1410. Total energy = 2687.9975 kcal/mol (2686.5817 without restraints) Performing minimization step: 1411. Total energy = 2686.8194 kcal/mol (2685.4042 without restraints) Performing minimization step: 1412. Total energy = 2685.6419 kcal/mol (2684.2274 without restraints) Performing minimization step: 1413. Total energy = 2684.4650 kcal/mol (2683.0512 without restraints) Performing minimization step: 1414. Total energy = 2683.2894 kcal/mol (2681.8761 without restraints) Performing minimization step: 1415. Total energy = 2682.1145 kcal/mol (2680.7018 without restraints) Performing minimization step: 1416. Total energy = 2680.9404 kcal/mol (2679.5283 without restraints) Performing minimization step: 1417. Total energy = 2679.7672 kcal/mol (2678.3558 without restraints) Performing minimization step: 1418. Total energy = 2678.5946 kcal/mol (2677.1838 without restraints) Performing minimization step: 1419. Total energy = 2677.4233 kcal/mol (2676.0130 without restraints) Performing minimization step: 1420. Total energy = 2676.2523 kcal/mol (2674.8427 without restraints) Performing minimization step: 1421. Total energy = 2675.0821 kcal/mol (2673.6731 without restraints) Performing minimization step: 1422. Total energy = 2673.9125 kcal/mol (2672.5041 without restraints) Performing minimization step: 1423. Total energy = 2672.7440 kcal/mol (2671.3361 without restraints) Performing minimization step: 1424. Total energy = 2671.5762 kcal/mol (2670.1690 without restraints) Performing minimization step: 1425. Total energy = 2670.4093 kcal/mol (2669.0027 without restraints) Performing minimization step: 1426. Total energy = 2669.2432 kcal/mol (2667.8372 without restraints) Performing minimization step: 1427. Total energy = 2668.0779 kcal/mol (2666.6725 without restraints) Performing minimization step: 1428. Total energy = 2666.9134 kcal/mol (2665.5086 without restraints) Performing minimization step: 1429. Total energy = 2665.7497 kcal/mol (2664.3455 without restraints) Performing minimization step: 1430. Total energy = 2664.5870 kcal/mol (2663.1835 without restraints) Performing minimization step: 1431. Total energy = 2663.4251 kcal/mol (2662.0222 without restraints) Performing minimization step: 1432. Total energy = 2662.2639 kcal/mol (2660.8616 without restraints) Performing minimization step: 1433. Total energy = 2661.1035 kcal/mol (2659.7018 without restraints) Performing minimization step: 1434. Total energy = 2659.9439 kcal/mol (2658.5428 without restraints) Performing minimization step: 1435. Total energy = 2658.7852 kcal/mol (2657.3846 without restraints) Performing minimization step: 1436. Total energy = 2657.6271 kcal/mol (2656.2272 without restraints) Performing minimization step: 1437. Total energy = 2656.4699 kcal/mol (2655.0707 without restraints) Performing minimization step: 1438. Total energy = 2655.3137 kcal/mol (2653.9150 without restraints) Performing minimization step: 1439. Total energy = 2654.1582 kcal/mol (2652.7601 without restraints) Performing minimization step: 1440. Total energy = 2653.0038 kcal/mol (2651.6063 without restraints) Performing minimization step: 1441. Total energy = 2651.8500 kcal/mol (2650.4531 without restraints) Performing minimization step: 1442. Total energy = 2650.6969 kcal/mol (2649.3005 without restraints) Performing minimization step: 1443. Total energy = 2649.5447 kcal/mol (2648.1490 without restraints) Performing minimization step: 1444. Total energy = 2648.3934 kcal/mol (2646.9983 without restraints) Performing minimization step: 1445. Total energy = 2647.2430 kcal/mol (2645.8485 without restraints) Performing minimization step: 1446. Total energy = 2646.0935 kcal/mol (2644.6997 without restraints) Performing minimization step: 1447. Total energy = 2644.9448 kcal/mol (2643.5515 without restraints) Performing minimization step: 1448. Total energy = 2643.7971 kcal/mol (2642.4044 without restraints) Performing minimization step: 1449. Total energy = 2642.6500 kcal/mol (2641.2580 without restraints) Performing minimization step: 1450. Total energy = 2641.5041 kcal/mol (2640.1127 without restraints) Performing minimization step: 1451. Total energy = 2640.3585 kcal/mol (2638.9677 without restraints) Performing minimization step: 1452. Total energy = 2639.2140 kcal/mol (2637.8238 without restraints) Performing minimization step: 1453. Total energy = 2638.0703 kcal/mol (2636.6807 without restraints) Performing minimization step: 1454. Total energy = 2636.9277 kcal/mol (2635.5386 without restraints) Performing minimization step: 1455. Total energy = 2635.7857 kcal/mol (2634.3973 without restraints) Performing minimization step: 1456. Total energy = 2634.6446 kcal/mol (2633.2567 without restraints) Performing minimization step: 1457. Total energy = 2633.5044 kcal/mol (2632.1173 without restraints) Performing minimization step: 1458. Total energy = 2632.3650 kcal/mol (2630.9783 without restraints) Performing minimization step: 1459. Total energy = 2631.2264 kcal/mol (2629.8404 without restraints) Performing minimization step: 1460. Total energy = 2630.0887 kcal/mol (2628.7033 without restraints) Performing minimization step: 1461. Total energy = 2628.9517 kcal/mol (2627.5669 without restraints) Performing minimization step: 1462. Total energy = 2627.8159 kcal/mol (2626.4317 without restraints) Performing minimization step: 1463. Total energy = 2626.6808 kcal/mol (2625.2972 without restraints) Performing minimization step: 1464. Total energy = 2625.5464 kcal/mol (2624.1634 without restraints) Performing minimization step: 1465. Total energy = 2624.4131 kcal/mol (2623.0307 without restraints) Performing minimization step: 1466. Total energy = 2623.2805 kcal/mol (2621.8987 without restraints) Performing minimization step: 1467. Total energy = 2622.1491 kcal/mol (2620.7679 without restraints) Performing minimization step: 1468. Total energy = 2621.0183 kcal/mol (2619.6378 without restraints) Performing minimization step: 1469. Total energy = 2619.8886 kcal/mol (2618.5086 without restraints) Performing minimization step: 1470. Total energy = 2618.7596 kcal/mol (2617.3802 without restraints) Performing minimization step: 1471. Total energy = 2617.6316 kcal/mol (2616.2529 without restraints) Performing minimization step: 1472. Total energy = 2616.5043 kcal/mol (2615.1262 without restraints) Performing minimization step: 1473. Total energy = 2615.3780 kcal/mol (2614.0004 without restraints) Performing minimization step: 1474. Total energy = 2614.2527 kcal/mol (2612.8757 without restraints) Performing minimization step: 1475. Total energy = 2613.1279 kcal/mol (2611.7515 without restraints) Performing minimization step: 1476. Total energy = 2612.0044 kcal/mol (2610.6286 without restraints) Performing minimization step: 1477. Total energy = 2610.8812 kcal/mol (2609.5060 without restraints) Performing minimization step: 1478. Total energy = 2609.7594 kcal/mol (2608.3848 without restraints) Performing minimization step: 1479. Total energy = 2608.6383 kcal/mol (2607.2644 without restraints) Performing minimization step: 1480. Total energy = 2607.5182 kcal/mol (2606.1448 without restraints) Performing minimization step: 1481. Total energy = 2606.3989 kcal/mol (2605.0261 without restraints) Performing minimization step: 1482. Total energy = 2605.2805 kcal/mol (2603.9083 without restraints) Performing minimization step: 1483. Total energy = 2604.1633 kcal/mol (2602.7917 without restraints) Performing minimization step: 1484. Total energy = 2603.0466 kcal/mol (2601.6756 without restraints) Performing minimization step: 1485. Total energy = 2601.9309 kcal/mol (2600.5605 without restraints) Performing minimization step: 1486. Total energy = 2600.8162 kcal/mol (2599.4464 without restraints) Performing minimization step: 1487. Total energy = 2599.7023 kcal/mol (2598.3331 without restraints) Performing minimization step: 1488. Total energy = 2598.5894 kcal/mol (2597.2208 without restraints) Performing minimization step: 1489. Total energy = 2597.4772 kcal/mol (2596.1092 without restraints) Performing minimization step: 1490. Total energy = 2596.3661 kcal/mol (2594.9988 without restraints) Performing minimization step: 1491. Total energy = 2595.2559 kcal/mol (2593.8892 without restraints) Performing minimization step: 1492. Total energy = 2594.1468 kcal/mol (2592.7806 without restraints) Performing minimization step: 1493. Total energy = 2593.0384 kcal/mol (2591.6728 without restraints) Performing minimization step: 1494. Total energy = 2591.9310 kcal/mol (2590.5660 without restraints) Performing minimization step: 1495. Total energy = 2590.8245 kcal/mol (2589.4601 without restraints) Performing minimization step: 1496. Total energy = 2589.7191 kcal/mol (2588.3553 without restraints) Performing minimization step: 1497. Total energy = 2588.6145 kcal/mol (2587.2513 without restraints) Performing minimization step: 1498. Total energy = 2587.5108 kcal/mol (2586.1482 without restraints) Performing minimization step: 1499. Total energy = 2586.4080 kcal/mol (2585.0460 without restraints) Performing minimization step: 1500. Total energy = 2585.3062 kcal/mol (2583.9448 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 2584.2053 kcal/mol (2582.8445 without restraints) Performing minimization step: 1502. Total energy = 2583.1051 kcal/mol (2581.7449 without restraints) Performing minimization step: 1503. Total energy = 2582.0059 kcal/mol (2580.6463 without restraints) Performing minimization step: 1504. Total energy = 2580.9078 kcal/mol (2579.5488 without restraints) Performing minimization step: 1505. Total energy = 2579.8106 kcal/mol (2578.4522 without restraints) Performing minimization step: 1506. Total energy = 2578.7145 kcal/mol (2577.3566 without restraints) Performing minimization step: 1507. Total energy = 2577.6192 kcal/mol (2576.2620 without restraints) Performing minimization step: 1508. Total energy = 2576.5246 kcal/mol (2575.1680 without restraints) Performing minimization step: 1509. Total energy = 2575.4317 kcal/mol (2574.0757 without restraints) Performing minimization step: 1510. Total energy = 2574.3393 kcal/mol (2572.9839 without restraints) Performing minimization step: 1511. Total energy = 2573.2476 kcal/mol (2571.8928 without restraints) Performing minimization step: 1512. Total energy = 2572.1571 kcal/mol (2570.8029 without restraints) Performing minimization step: 1513. Total energy = 2571.0676 kcal/mol (2569.7141 without restraints) Performing minimization step: 1514. Total energy = 2569.9792 kcal/mol (2568.6262 without restraints) Performing minimization step: 1515. Total energy = 2568.8918 kcal/mol (2567.5394 without restraints) Performing minimization step: 1516. Total energy = 2567.8052 kcal/mol (2566.4534 without restraints) Performing minimization step: 1517. Total energy = 2566.7199 kcal/mol (2565.3688 without restraints) Performing minimization step: 1518. Total energy = 2565.6354 kcal/mol (2564.2847 without restraints) Performing minimization step: 1519. Total energy = 2564.5517 kcal/mol (2563.2016 without restraints) Performing minimization step: 1520. Total energy = 2563.4689 kcal/mol (2562.1195 without restraints) Performing minimization step: 1521. Total energy = 2562.3874 kcal/mol (2561.0386 without restraints) Performing minimization step: 1522. Total energy = 2561.3067 kcal/mol (2559.9585 without restraints) Performing minimization step: 1523. Total energy = 2560.2270 kcal/mol (2558.8794 without restraints) Performing minimization step: 1524. Total energy = 2559.1482 kcal/mol (2557.8012 without restraints) Performing minimization step: 1525. Total energy = 2558.0704 kcal/mol (2556.7240 without restraints) Performing minimization step: 1526. Total energy = 2556.9937 kcal/mol (2555.6479 without restraints) Performing minimization step: 1527. Total energy = 2555.9180 kcal/mol (2554.5727 without restraints) Performing minimization step: 1528. Total energy = 2554.8433 kcal/mol (2553.4987 without restraints) Performing minimization step: 1529. Total energy = 2553.7699 kcal/mol (2552.4259 without restraints) Performing minimization step: 1530. Total energy = 2552.6971 kcal/mol (2551.3537 without restraints) Performing minimization step: 1531. Total energy = 2551.6253 kcal/mol (2550.2825 without restraints) Performing minimization step: 1532. Total energy = 2550.5545 kcal/mol (2549.2123 without restraints) Performing minimization step: 1533. Total energy = 2549.4849 kcal/mol (2548.1434 without restraints) Performing minimization step: 1534. Total energy = 2548.4162 kcal/mol (2547.0752 without restraints) Performing minimization step: 1535. Total energy = 2547.3484 kcal/mol (2546.0080 without restraints) Performing minimization step: 1536. Total energy = 2546.2816 kcal/mol (2544.9418 without restraints) Performing minimization step: 1537. Total energy = 2545.2161 kcal/mol (2543.8768 without restraints) Performing minimization step: 1538. Total energy = 2544.1515 kcal/mol (2542.8129 without restraints) Performing minimization step: 1539. Total energy = 2543.0880 kcal/mol (2541.7500 without restraints) Performing minimization step: 1540. Total energy = 2542.0254 kcal/mol (2540.6881 without restraints) Performing minimization step: 1541. Total energy = 2540.9638 kcal/mol (2539.6270 without restraints) Performing minimization step: 1542. Total energy = 2539.9032 kcal/mol (2538.5670 without restraints) Performing minimization step: 1543. Total energy = 2538.8436 kcal/mol (2537.5079 without restraints) Performing minimization step: 1544. Total energy = 2537.7850 kcal/mol (2536.4500 without restraints) Performing minimization step: 1545. Total energy = 2536.7277 kcal/mol (2535.3933 without restraints) Performing minimization step: 1546. Total energy = 2535.6715 kcal/mol (2534.3376 without restraints) Performing minimization step: 1547. Total energy = 2534.6160 kcal/mol (2533.2827 without restraints) Performing minimization step: 1548. Total energy = 2533.5613 kcal/mol (2532.2287 without restraints) Performing minimization step: 1549. Total energy = 2532.5079 kcal/mol (2531.1759 without restraints) Performing minimization step: 1550. Total energy = 2531.4558 kcal/mol (2530.1243 without restraints) Performing minimization step: 1551. Total energy = 2530.4045 kcal/mol (2529.0736 without restraints) Performing minimization step: 1552. Total energy = 2529.3542 kcal/mol (2528.0240 without restraints) Performing minimization step: 1553. Total energy = 2528.3050 kcal/mol (2526.9753 without restraints) Performing minimization step: 1554. Total energy = 2527.2568 kcal/mol (2525.9278 without restraints) Performing minimization step: 1555. Total energy = 2526.2097 kcal/mol (2524.8813 without restraints) Performing minimization step: 1556. Total energy = 2525.1637 kcal/mol (2523.8358 without restraints) Performing minimization step: 1557. Total energy = 2524.1189 kcal/mol (2522.7915 without restraints) Performing minimization step: 1558. Total energy = 2523.0748 kcal/mol (2521.7482 without restraints) Performing minimization step: 1559. Total energy = 2522.0320 kcal/mol (2520.7059 without restraints) Performing minimization step: 1560. Total energy = 2520.9902 kcal/mol (2519.6647 without restraints) Performing minimization step: 1561. Total energy = 2519.9495 kcal/mol (2518.6246 without restraints) Performing minimization step: 1562. Total energy = 2518.9098 kcal/mol (2517.5856 without restraints) Performing minimization step: 1563. Total energy = 2517.8715 kcal/mol (2516.5478 without restraints) Performing minimization step: 1564. Total energy = 2516.8343 kcal/mol (2515.5113 without restraints) Performing minimization step: 1565. Total energy = 2515.7980 kcal/mol (2514.4755 without restraints) Performing minimization step: 1566. Total energy = 2514.7628 kcal/mol (2513.4411 without restraints) Performing minimization step: 1567. Total energy = 2513.7287 kcal/mol (2512.4074 without restraints) Performing minimization step: 1568. Total energy = 2512.6954 kcal/mol (2511.3747 without restraints) Performing minimization step: 1569. Total energy = 2511.6635 kcal/mol (2510.3434 without restraints) Performing minimization step: 1570. Total energy = 2510.6325 kcal/mol (2509.3130 without restraints) Performing minimization step: 1571. Total energy = 2509.6026 kcal/mol (2508.2837 without restraints) Performing minimization step: 1572. Total energy = 2508.5739 kcal/mol (2507.2557 without restraints) Performing minimization step: 1573. Total energy = 2507.5463 kcal/mol (2506.2286 without restraints) Performing minimization step: 1574. Total energy = 2506.5197 kcal/mol (2505.2026 without restraints) Performing minimization step: 1575. Total energy = 2505.4942 kcal/mol (2504.1777 without restraints) Performing minimization step: 1576. Total energy = 2504.4698 kcal/mol (2503.1541 without restraints) Performing minimization step: 1577. Total energy = 2503.4464 kcal/mol (2502.1311 without restraints) Performing minimization step: 1578. Total energy = 2502.4239 kcal/mol (2501.1092 without restraints) Performing minimization step: 1579. Total energy = 2501.4027 kcal/mol (2500.0887 without restraints) Performing minimization step: 1580. Total energy = 2500.3827 kcal/mol (2499.0693 without restraints) Performing minimization step: 1581. Total energy = 2499.3641 kcal/mol (2498.0512 without restraints) Performing minimization step: 1582. Total energy = 2498.3463 kcal/mol (2497.0341 without restraints) Performing minimization step: 1583. Total energy = 2497.3296 kcal/mol (2496.0180 without restraints) Performing minimization step: 1584. Total energy = 2496.3141 kcal/mol (2495.0031 without restraints) Performing minimization step: 1585. Total energy = 2495.2997 kcal/mol (2493.9893 without restraints) Performing minimization step: 1586. Total energy = 2494.2863 kcal/mol (2492.9764 without restraints) Performing minimization step: 1587. Total energy = 2493.2740 kcal/mol (2491.9648 without restraints) Performing minimization step: 1588. Total energy = 2492.2629 kcal/mol (2490.9543 without restraints) Performing minimization step: 1589. Total energy = 2491.2528 kcal/mol (2489.9448 without restraints) Performing minimization step: 1590. Total energy = 2490.2441 kcal/mol (2488.9368 without restraints) Performing minimization step: 1591. Total energy = 2489.2366 kcal/mol (2487.9298 without restraints) Performing minimization step: 1592. Total energy = 2488.2301 kcal/mol (2486.9239 without restraints) Performing minimization step: 1593. Total energy = 2487.2250 kcal/mol (2485.9193 without restraints) Performing minimization step: 1594. Total energy = 2486.2208 kcal/mol (2484.9157 without restraints) Performing minimization step: 1595. Total energy = 2485.2177 kcal/mol (2483.9132 without restraints) Performing minimization step: 1596. Total energy = 2484.2156 kcal/mol (2482.9118 without restraints) Performing minimization step: 1597. Total energy = 2483.2149 kcal/mol (2481.9116 without restraints) Performing minimization step: 1598. Total energy = 2482.2150 kcal/mol (2480.9124 without restraints) Performing minimization step: 1599. Total energy = 2481.2166 kcal/mol (2479.9147 without restraints) Performing minimization step: 1600. Total energy = 2480.2194 kcal/mol (2478.9180 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 2479.2232 kcal/mol (2477.9224 without restraints) Performing minimization step: 1602. Total energy = 2478.2282 kcal/mol (2476.9280 without restraints) Performing minimization step: 1603. Total energy = 2477.2345 kcal/mol (2475.9349 without restraints) Performing minimization step: 1604. Total energy = 2476.2421 kcal/mol (2474.9431 without restraints) Performing minimization step: 1605. Total energy = 2475.2503 kcal/mol (2473.9519 without restraints) Performing minimization step: 1606. Total energy = 2474.2599 kcal/mol (2472.9621 without restraints) Performing minimization step: 1607. Total energy = 2473.2702 kcal/mol (2471.9730 without restraints) Performing minimization step: 1608. Total energy = 2472.2822 kcal/mol (2470.9856 without restraints) Performing minimization step: 1609. Total energy = 2471.2951 kcal/mol (2469.9991 without restraints) Performing minimization step: 1610. Total energy = 2470.3094 kcal/mol (2469.0140 without restraints) Performing minimization step: 1611. Total energy = 2469.3253 kcal/mol (2468.0305 without restraints) Performing minimization step: 1612. Total energy = 2468.3417 kcal/mol (2467.0475 without restraints) Performing minimization step: 1613. Total energy = 2467.3596 kcal/mol (2466.0660 without restraints) Performing minimization step: 1614. Total energy = 2466.3783 kcal/mol (2465.0853 without restraints) Performing minimization step: 1615. Total energy = 2465.3985 kcal/mol (2464.1061 without restraints) Performing minimization step: 1616. Total energy = 2464.4198 kcal/mol (2463.1279 without restraints) Performing minimization step: 1617. Total energy = 2463.4422 kcal/mol (2462.1511 without restraints) Performing minimization step: 1618. Total energy = 2462.4660 kcal/mol (2461.1755 without restraints) Performing minimization step: 1619. Total energy = 2461.4909 kcal/mol (2460.2010 without restraints) Performing minimization step: 1620. Total energy = 2460.5169 kcal/mol (2459.2275 without restraints) Performing minimization step: 1621. Total energy = 2459.5442 kcal/mol (2458.2556 without restraints) Performing minimization step: 1622. Total energy = 2458.5731 kcal/mol (2457.2850 without restraints) Performing minimization step: 1623. Total energy = 2457.6028 kcal/mol (2456.3152 without restraints) Performing minimization step: 1624. Total energy = 2456.6338 kcal/mol (2455.3469 without restraints) Performing minimization step: 1625. Total energy = 2455.6659 kcal/mol (2454.3796 without restraints) Performing minimization step: 1626. Total energy = 2454.6993 kcal/mol (2453.4135 without restraints) Performing minimization step: 1627. Total energy = 2453.7341 kcal/mol (2452.4490 without restraints) Performing minimization step: 1628. Total energy = 2452.7699 kcal/mol (2451.4853 without restraints) Performing minimization step: 1629. Total energy = 2451.8067 kcal/mol (2450.5228 without restraints) Performing minimization step: 1630. Total energy = 2450.8450 kcal/mol (2449.5617 without restraints) Performing minimization step: 1631. Total energy = 2449.8845 kcal/mol (2448.6018 without restraints) Performing minimization step: 1632. Total energy = 2448.9249 kcal/mol (2447.6426 without restraints) Performing minimization step: 1633. Total energy = 2447.9664 kcal/mol (2446.6849 without restraints) Performing minimization step: 1634. Total energy = 2447.0100 kcal/mol (2445.7291 without restraints) Performing minimization step: 1635. Total energy = 2446.0542 kcal/mol (2444.7740 without restraints) Performing minimization step: 1636. Total energy = 2445.0994 kcal/mol (2443.8198 without restraints) Performing minimization step: 1637. Total energy = 2444.1461 kcal/mol (2442.8670 without restraints) Performing minimization step: 1638. Total energy = 2443.1938 kcal/mol (2441.9153 without restraints) Performing minimization step: 1639. Total energy = 2442.2429 kcal/mol (2440.9650 without restraints) Performing minimization step: 1640. Total energy = 2441.2930 kcal/mol (2440.0157 without restraints) Performing minimization step: 1641. Total energy = 2440.3446 kcal/mol (2439.0680 without restraints) Performing minimization step: 1642. Total energy = 2439.3974 kcal/mol (2438.1214 without restraints) Performing minimization step: 1643. Total energy = 2438.4515 kcal/mol (2437.1761 without restraints) Performing minimization step: 1644. Total energy = 2437.5068 kcal/mol (2436.2320 without restraints) Performing minimization step: 1645. Total energy = 2436.5632 kcal/mol (2435.2890 without restraints) Performing minimization step: 1646. Total energy = 2435.6209 kcal/mol (2434.3473 without restraints) Performing minimization step: 1647. Total energy = 2434.6798 kcal/mol (2433.4068 without restraints) Performing minimization step: 1648. Total energy = 2433.7398 kcal/mol (2432.4674 without restraints) Performing minimization step: 1649. Total energy = 2432.8013 kcal/mol (2431.5295 without restraints) Performing minimization step: 1650. Total energy = 2431.8639 kcal/mol (2430.5925 without restraints) Performing minimization step: 1651. Total energy = 2430.9273 kcal/mol (2429.6568 without restraints) Performing minimization step: 1652. Total energy = 2429.9926 kcal/mol (2428.7226 without restraints) Performing minimization step: 1653. Total energy = 2429.0593 kcal/mol (2427.7900 without restraints) Performing minimization step: 1654. Total energy = 2428.1271 kcal/mol (2426.8583 without restraints) Performing minimization step: 1655. Total energy = 2427.1963 kcal/mol (2425.9281 without restraints) Performing minimization step: 1656. Total energy = 2426.2665 kcal/mol (2424.9990 without restraints) Performing minimization step: 1657. Total energy = 2425.3380 kcal/mol (2424.0711 without restraints) Performing minimization step: 1658. Total energy = 2424.4108 kcal/mol (2423.1444 without restraints) Performing minimization step: 1659. Total energy = 2423.4848 kcal/mol (2422.2190 without restraints) Performing minimization step: 1660. Total energy = 2422.5600 kcal/mol (2421.2949 without restraints) Performing minimization step: 1661. Total energy = 2421.6365 kcal/mol (2420.3720 without restraints) Performing minimization step: 1662. Total energy = 2420.7143 kcal/mol (2419.4504 without restraints) Performing minimization step: 1663. Total energy = 2419.7933 kcal/mol (2418.5300 without restraints) Performing minimization step: 1664. Total energy = 2418.8739 kcal/mol (2417.6112 without restraints) Performing minimization step: 1665. Total energy = 2417.9558 kcal/mol (2416.6937 without restraints) Performing minimization step: 1666. Total energy = 2417.0388 kcal/mol (2415.7774 without restraints) Performing minimization step: 1667. Total energy = 2416.1230 kcal/mol (2414.8621 without restraints) Performing minimization step: 1668. Total energy = 2415.2090 kcal/mol (2413.9488 without restraints) Performing minimization step: 1669. Total energy = 2414.2952 kcal/mol (2413.0356 without restraints) Performing minimization step: 1670. Total energy = 2413.3836 kcal/mol (2412.1246 without restraints) Performing minimization step: 1671. Total energy = 2412.4724 kcal/mol (2411.2140 without restraints) Performing minimization step: 1672. Total energy = 2411.5629 kcal/mol (2410.3051 without restraints) Performing minimization step: 1673. Total energy = 2410.6547 kcal/mol (2409.3975 without restraints) Performing minimization step: 1674. Total energy = 2409.7478 kcal/mol (2408.4912 without restraints) Performing minimization step: 1675. Total energy = 2408.8421 kcal/mol (2407.5861 without restraints) Performing minimization step: 1676. Total energy = 2407.9377 kcal/mol (2406.6824 without restraints) Performing minimization step: 1677. Total energy = 2407.0347 kcal/mol (2405.7799 without restraints) Performing minimization step: 1678. Total energy = 2406.1329 kcal/mol (2404.8787 without restraints) Performing minimization step: 1679. Total energy = 2405.2321 kcal/mol (2403.9786 without restraints) Performing minimization step: 1680. Total energy = 2404.3327 kcal/mol (2403.0798 without restraints) Performing minimization step: 1681. Total energy = 2403.4348 kcal/mol (2402.1825 without restraints) Performing minimization step: 1682. Total energy = 2402.5383 kcal/mol (2401.2866 without restraints) Performing minimization step: 1683. Total energy = 2401.6430 kcal/mol (2400.3918 without restraints) Performing minimization step: 1684. Total energy = 2400.7489 kcal/mol (2399.4983 without restraints) Performing minimization step: 1685. Total energy = 2399.8561 kcal/mol (2398.6062 without restraints) Performing minimization step: 1686. Total energy = 2398.9646 kcal/mol (2397.7153 without restraints) Performing minimization step: 1687. Total energy = 2398.0744 kcal/mol (2396.8257 without restraints) Performing minimization step: 1688. Total energy = 2397.1856 kcal/mol (2395.9376 without restraints) Performing minimization step: 1689. Total energy = 2396.2981 kcal/mol (2395.0507 without restraints) Performing minimization step: 1690. Total energy = 2395.4119 kcal/mol (2394.1650 without restraints) Performing minimization step: 1691. Total energy = 2394.5271 kcal/mol (2393.2808 without restraints) Performing minimization step: 1692. Total energy = 2393.6430 kcal/mol (2392.3973 without restraints) Performing minimization step: 1693. Total energy = 2392.7606 kcal/mol (2391.5156 without restraints) Performing minimization step: 1694. Total energy = 2391.8795 kcal/mol (2390.6351 without restraints) Performing minimization step: 1695. Total energy = 2390.9998 kcal/mol (2389.7559 without restraints) Performing minimization step: 1696. Total energy = 2390.1213 kcal/mol (2388.8780 without restraints) Performing minimization step: 1697. Total energy = 2389.2441 kcal/mol (2388.0015 without restraints) Performing minimization step: 1698. Total energy = 2388.3686 kcal/mol (2387.1267 without restraints) Performing minimization step: 1699. Total energy = 2387.4938 kcal/mol (2386.2524 without restraints) Performing minimization step: 1700. Total energy = 2386.6205 kcal/mol (2385.3797 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 2385.7486 kcal/mol (2384.5084 without restraints) Performing minimization step: 1702. Total energy = 2384.8782 kcal/mol (2383.6386 without restraints) Performing minimization step: 1703. Total energy = 2384.0093 kcal/mol (2382.7704 without restraints) Performing minimization step: 1704. Total energy = 2383.1416 kcal/mol (2381.9032 without restraints) Performing minimization step: 1705. Total energy = 2382.2751 kcal/mol (2381.0373 without restraints) Performing minimization step: 1706. Total energy = 2381.4095 kcal/mol (2380.1724 without restraints) Performing minimization step: 1707. Total energy = 2380.5454 kcal/mol (2379.3089 without restraints) Performing minimization step: 1708. Total energy = 2379.6829 kcal/mol (2378.4470 without restraints) Performing minimization step: 1709. Total energy = 2378.8217 kcal/mol (2377.5864 without restraints) Performing minimization step: 1710. Total energy = 2377.9616 kcal/mol (2376.7269 without restraints) Performing minimization step: 1711. Total energy = 2377.1028 kcal/mol (2375.8687 without restraints) Performing minimization step: 1712. Total energy = 2376.2453 kcal/mol (2375.0118 without restraints) Performing minimization step: 1713. Total energy = 2375.3892 kcal/mol (2374.1563 without restraints) Performing minimization step: 1714. Total energy = 2374.5344 kcal/mol (2373.3023 without restraints) Performing minimization step: 1715. Total energy = 2373.6813 kcal/mol (2372.4496 without restraints) Performing minimization step: 1716. Total energy = 2372.8291 kcal/mol (2371.5981 without restraints) Performing minimization step: 1717. Total energy = 2371.9785 kcal/mol (2370.7480 without restraints) Performing minimization step: 1718. Total energy = 2371.1292 kcal/mol (2369.8994 without restraints) Performing minimization step: 1719. Total energy = 2370.2810 kcal/mol (2369.0518 without restraints) Performing minimization step: 1720. Total energy = 2369.4341 kcal/mol (2368.2055 without restraints) Performing minimization step: 1721. Total energy = 2368.5888 kcal/mol (2367.3608 without restraints) Performing minimization step: 1722. Total energy = 2367.7449 kcal/mol (2366.5175 without restraints) Performing minimization step: 1723. Total energy = 2366.9022 kcal/mol (2365.6755 without restraints) Performing minimization step: 1724. Total energy = 2366.0602 kcal/mol (2364.8341 without restraints) Performing minimization step: 1725. Total energy = 2365.2198 kcal/mol (2363.9943 without restraints) Performing minimization step: 1726. Total energy = 2364.3808 kcal/mol (2363.1558 without restraints) Performing minimization step: 1727. Total energy = 2363.5432 kcal/mol (2362.3189 without restraints) Performing minimization step: 1728. Total energy = 2362.7075 kcal/mol (2361.4838 without restraints) Performing minimization step: 1729. Total energy = 2361.8727 kcal/mol (2360.6496 without restraints) Performing minimization step: 1730. Total energy = 2361.0392 kcal/mol (2359.8167 without restraints) Performing minimization step: 1731. Total energy = 2360.2070 kcal/mol (2358.9851 without restraints) Performing minimization step: 1732. Total energy = 2359.3763 kcal/mol (2358.1550 without restraints) Performing minimization step: 1733. Total energy = 2358.5469 kcal/mol (2357.3262 without restraints) Performing minimization step: 1734. Total energy = 2357.7187 kcal/mol (2356.4986 without restraints) Performing minimization step: 1735. Total energy = 2356.8919 kcal/mol (2355.6724 without restraints) Performing minimization step: 1736. Total energy = 2356.0663 kcal/mol (2354.8475 without restraints) Performing minimization step: 1737. Total energy = 2355.2421 kcal/mol (2354.0238 without restraints) Performing minimization step: 1738. Total energy = 2354.4192 kcal/mol (2353.2016 without restraints) Performing minimization step: 1739. Total energy = 2353.5976 kcal/mol (2352.3806 without restraints) Performing minimization step: 1740. Total energy = 2352.7774 kcal/mol (2351.5610 without restraints) Performing minimization step: 1741. Total energy = 2351.9585 kcal/mol (2350.7427 without restraints) Performing minimization step: 1742. Total energy = 2351.1409 kcal/mol (2349.9257 without restraints) Performing minimization step: 1743. Total energy = 2350.3246 kcal/mol (2349.1101 without restraints) Performing minimization step: 1744. Total energy = 2349.5098 kcal/mol (2348.2958 without restraints) Performing minimization step: 1745. Total energy = 2348.6963 kcal/mol (2347.4829 without restraints) Performing minimization step: 1746. Total energy = 2347.8840 kcal/mol (2346.6713 without restraints) Performing minimization step: 1747. Total energy = 2347.0731 kcal/mol (2345.8610 without restraints) Performing minimization step: 1748. Total energy = 2346.2636 kcal/mol (2345.0521 without restraints) Performing minimization step: 1749. Total energy = 2345.4555 kcal/mol (2344.2446 without restraints) Performing minimization step: 1750. Total energy = 2344.6489 kcal/mol (2343.4386 without restraints) Performing minimization step: 1751. Total energy = 2343.8434 kcal/mol (2342.6337 without restraints) Performing minimization step: 1752. Total energy = 2343.0392 kcal/mol (2341.8301 without restraints) Performing minimization step: 1753. Total energy = 2342.2362 kcal/mol (2341.0277 without restraints) Performing minimization step: 1754. Total energy = 2341.4349 kcal/mol (2340.2270 without restraints) Performing minimization step: 1755. Total energy = 2340.6347 kcal/mol (2339.4275 without restraints) Performing minimization step: 1756. Total energy = 2339.8359 kcal/mol (2338.6292 without restraints) Performing minimization step: 1757. Total energy = 2339.0385 kcal/mol (2337.8325 without restraints) Performing minimization step: 1758. Total energy = 2338.2424 kcal/mol (2337.0370 without restraints) Performing minimization step: 1759. Total energy = 2337.4479 kcal/mol (2336.2431 without restraints) Performing minimization step: 1760. Total energy = 2336.6544 kcal/mol (2335.4502 without restraints) Performing minimization step: 1761. Total energy = 2335.8625 kcal/mol (2334.6589 without restraints) Performing minimization step: 1762. Total energy = 2335.0717 kcal/mol (2333.8687 without restraints) Performing minimization step: 1763. Total energy = 2334.2823 kcal/mol (2333.0799 without restraints) Performing minimization step: 1764. Total energy = 2333.4944 kcal/mol (2332.2927 without restraints) Performing minimization step: 1765. Total energy = 2332.7077 kcal/mol (2331.5065 without restraints) Performing minimization step: 1766. Total energy = 2331.9223 kcal/mol (2330.7218 without restraints) Performing minimization step: 1767. Total energy = 2331.1382 kcal/mol (2329.9383 without restraints) Performing minimization step: 1768. Total energy = 2330.3558 kcal/mol (2329.1564 without restraints) Performing minimization step: 1769. Total energy = 2329.5742 kcal/mol (2328.3755 without restraints) Performing minimization step: 1770. Total energy = 2328.7943 kcal/mol (2327.5962 without restraints) Performing minimization step: 1771. Total energy = 2328.0156 kcal/mol (2326.8181 without restraints) Performing minimization step: 1772. Total energy = 2327.2386 kcal/mol (2326.0417 without restraints) Performing minimization step: 1773. Total energy = 2326.4626 kcal/mol (2325.2664 without restraints) Performing minimization step: 1774. Total energy = 2325.6880 kcal/mol (2324.4923 without restraints) Performing minimization step: 1775. Total energy = 2324.9150 kcal/mol (2323.7200 without restraints) Performing minimization step: 1776. Total energy = 2324.1431 kcal/mol (2322.9487 without restraints) Performing minimization step: 1777. Total energy = 2323.3724 kcal/mol (2322.1784 without restraints) Performing minimization step: 1778. Total energy = 2322.6028 kcal/mol (2321.4095 without restraints) Performing minimization step: 1779. Total energy = 2321.8346 kcal/mol (2320.6419 without restraints) Performing minimization step: 1780. Total energy = 2321.0680 kcal/mol (2319.8760 without restraints) Performing minimization step: 1781. Total energy = 2320.3029 kcal/mol (2319.1115 without restraints) Performing minimization step: 1782. Total energy = 2319.5389 kcal/mol (2318.3481 without restraints) Performing minimization step: 1783. Total energy = 2318.7762 kcal/mol (2317.5861 without restraints) Performing minimization step: 1784. Total energy = 2318.0150 kcal/mol (2316.8254 without restraints) Performing minimization step: 1785. Total energy = 2317.2552 kcal/mol (2316.0663 without restraints) Performing minimization step: 1786. Total energy = 2316.4966 kcal/mol (2315.3082 without restraints) Performing minimization step: 1787. Total energy = 2315.7389 kcal/mol (2314.5512 without restraints) Performing minimization step: 1788. Total energy = 2314.9830 kcal/mol (2313.7958 without restraints) Performing minimization step: 1789. Total energy = 2314.2284 kcal/mol (2313.0419 without restraints) Performing minimization step: 1790. Total energy = 2313.4749 kcal/mol (2312.2889 without restraints) Performing minimization step: 1791. Total energy = 2312.7227 kcal/mol (2311.5374 without restraints) Performing minimization step: 1792. Total energy = 2311.9718 kcal/mol (2310.7871 without restraints) Performing minimization step: 1793. Total energy = 2311.2225 kcal/mol (2310.0384 without restraints) Performing minimization step: 1794. Total energy = 2310.4746 kcal/mol (2309.2911 without restraints) Performing minimization step: 1795. Total energy = 2309.7282 kcal/mol (2308.5454 without restraints) Performing minimization step: 1796. Total energy = 2308.9832 kcal/mol (2307.8009 without restraints) Performing minimization step: 1797. Total energy = 2308.2392 kcal/mol (2307.0575 without restraints) Performing minimization step: 1798. Total energy = 2307.4966 kcal/mol (2306.3155 without restraints) Performing minimization step: 1799. Total energy = 2306.7553 kcal/mol (2305.5750 without restraints) Performing minimization step: 1800. Total energy = 2306.0154 kcal/mol (2304.8356 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 2305.2767 kcal/mol (2304.0974 without restraints) Performing minimization step: 1802. Total energy = 2304.5392 kcal/mol (2303.3604 without restraints) Performing minimization step: 1803. Total energy = 2303.8030 kcal/mol (2302.6250 without restraints) Performing minimization step: 1804. Total energy = 2303.0679 kcal/mol (2301.8905 without restraints) Performing minimization step: 1805. Total energy = 2302.3348 kcal/mol (2301.1580 without restraints) Performing minimization step: 1806. Total energy = 2301.6027 kcal/mol (2300.4265 without restraints) Performing minimization step: 1807. Total energy = 2300.8721 kcal/mol (2299.6965 without restraints) Performing minimization step: 1808. Total energy = 2300.1427 kcal/mol (2298.9677 without restraints) Performing minimization step: 1809. Total energy = 2299.4147 kcal/mol (2298.2403 without restraints) Performing minimization step: 1810. Total energy = 2298.6887 kcal/mol (2297.5142 without restraints) Performing minimization step: 1811. Total energy = 2297.9629 kcal/mol (2296.7896 without restraints) Performing minimization step: 1812. Total energy = 2297.2387 kcal/mol (2296.0661 without restraints) Performing minimization step: 1813. Total energy = 2296.5157 kcal/mol (2295.3438 without restraints) Performing minimization step: 1814. Total energy = 2295.7944 kcal/mol (2294.6231 without restraints) Performing minimization step: 1815. Total energy = 2295.0746 kcal/mol (2293.9039 without restraints) Performing minimization step: 1816. Total energy = 2294.3558 kcal/mol (2293.1857 without restraints) Performing minimization step: 1817. Total energy = 2293.6383 kcal/mol (2292.4688 without restraints) Performing minimization step: 1818. Total energy = 2292.9222 kcal/mol (2291.7534 without restraints) Performing minimization step: 1819. Total energy = 2292.2075 kcal/mol (2291.0392 without restraints) Performing minimization step: 1820. Total energy = 2291.4941 kcal/mol (2290.3264 without restraints) Performing minimization step: 1821. Total energy = 2290.7818 kcal/mol (2289.6147 without restraints) Performing minimization step: 1822. Total energy = 2290.0709 kcal/mol (2288.9044 without restraints) Performing minimization step: 1823. Total energy = 2289.3612 kcal/mol (2288.1954 without restraints) Performing minimization step: 1824. Total energy = 2288.6530 kcal/mol (2287.4877 without restraints) Performing minimization step: 1825. Total energy = 2287.9459 kcal/mol (2286.7813 without restraints) Performing minimization step: 1826. Total energy = 2287.2406 kcal/mol (2286.0766 without restraints) Performing minimization step: 1827. Total energy = 2286.5363 kcal/mol (2285.3728 without restraints) Performing minimization step: 1828. Total energy = 2285.8332 kcal/mol (2284.6704 without restraints) Performing minimization step: 1829. Total energy = 2285.1314 kcal/mol (2283.9692 without restraints) Performing minimization step: 1830. Total energy = 2284.4312 kcal/mol (2283.2696 without restraints) Performing minimization step: 1831. Total energy = 2283.7321 kcal/mol (2282.5710 without restraints) Performing minimization step: 1832. Total energy = 2283.0342 kcal/mol (2281.8737 without restraints) Performing minimization step: 1833. Total energy = 2282.3375 kcal/mol (2281.1775 without restraints) Performing minimization step: 1834. Total energy = 2281.6421 kcal/mol (2280.4829 without restraints) Performing minimization step: 1835. Total energy = 2280.9482 kcal/mol (2279.7896 without restraints) Performing minimization step: 1836. Total energy = 2280.2555 kcal/mol (2279.0975 without restraints) Performing minimization step: 1837. Total energy = 2279.5639 kcal/mol (2278.4065 without restraints) Performing minimization step: 1838. Total energy = 2278.8738 kcal/mol (2277.7170 without restraints) Performing minimization step: 1839. Total energy = 2278.1854 kcal/mol (2277.0292 without restraints) Performing minimization step: 1840. Total energy = 2277.4979 kcal/mol (2276.3423 without restraints) Performing minimization step: 1841. Total energy = 2276.8119 kcal/mol (2275.6568 without restraints) Performing minimization step: 1842. Total energy = 2276.1269 kcal/mol (2274.9725 without restraints) Performing minimization step: 1843. Total energy = 2275.4430 kcal/mol (2274.2892 without restraints) Performing minimization step: 1844. Total energy = 2274.7607 kcal/mol (2273.6075 without restraints) Performing minimization step: 1845. Total energy = 2274.0796 kcal/mol (2272.9270 without restraints) Performing minimization step: 1846. Total energy = 2273.3998 kcal/mol (2272.2478 without restraints) Performing minimization step: 1847. Total energy = 2272.7213 kcal/mol (2271.5699 without restraints) Performing minimization step: 1848. Total energy = 2272.0442 kcal/mol (2270.8934 without restraints) Performing minimization step: 1849. Total energy = 2271.3685 kcal/mol (2270.2183 without restraints) Performing minimization step: 1850. Total energy = 2270.6938 kcal/mol (2269.5442 without restraints) Performing minimization step: 1851. Total energy = 2270.0204 kcal/mol (2268.8714 without restraints) Performing minimization step: 1852. Total energy = 2269.3484 kcal/mol (2268.1999 without restraints) Performing minimization step: 1853. Total energy = 2268.6776 kcal/mol (2267.5297 without restraints) Performing minimization step: 1854. Total energy = 2268.0079 kcal/mol (2266.8607 without restraints) Performing minimization step: 1855. Total energy = 2267.3396 kcal/mol (2266.1930 without restraints) Performing minimization step: 1856. Total energy = 2266.6726 kcal/mol (2265.5266 without restraints) Performing minimization step: 1857. Total energy = 2266.0069 kcal/mol (2264.8615 without restraints) Performing minimization step: 1858. Total energy = 2265.3424 kcal/mol (2264.1976 without restraints) Performing minimization step: 1859. Total energy = 2264.6792 kcal/mol (2263.5350 without restraints) Performing minimization step: 1860. Total energy = 2264.0173 kcal/mol (2262.8737 without restraints) Performing minimization step: 1861. Total energy = 2263.3567 kcal/mol (2262.2136 without restraints) Performing minimization step: 1862. Total energy = 2262.6972 kcal/mol (2261.5548 without restraints) Performing minimization step: 1863. Total energy = 2262.0393 kcal/mol (2260.8975 without restraints) Performing minimization step: 1864. Total energy = 2261.3824 kcal/mol (2260.2412 without restraints) Performing minimization step: 1865. Total energy = 2260.7270 kcal/mol (2259.5864 without restraints) Performing minimization step: 1866. Total energy = 2260.0730 kcal/mol (2258.9329 without restraints) Performing minimization step: 1867. Total energy = 2259.4198 kcal/mol (2258.2804 without restraints) Performing minimization step: 1868. Total energy = 2258.7681 kcal/mol (2257.6293 without restraints) Performing minimization step: 1869. Total energy = 2258.1175 kcal/mol (2256.9793 without restraints) Performing minimization step: 1870. Total energy = 2257.4681 kcal/mol (2256.3305 without restraints) Performing minimization step: 1871. Total energy = 2256.8200 kcal/mol (2255.6830 without restraints) Performing minimization step: 1872. Total energy = 2256.1733 kcal/mol (2255.0369 without restraints) Performing minimization step: 1873. Total energy = 2255.5279 kcal/mol (2254.3921 without restraints) Performing minimization step: 1874. Total energy = 2254.8835 kcal/mol (2253.7483 without restraints) Performing minimization step: 1875. Total energy = 2254.2404 kcal/mol (2253.1057 without restraints) Performing minimization step: 1876. Total energy = 2253.5980 kcal/mol (2252.4640 without restraints) Performing minimization step: 1877. Total energy = 2252.9577 kcal/mol (2251.8242 without restraints) Performing minimization step: 1878. Total energy = 2252.3183 kcal/mol (2251.1856 without restraints) Performing minimization step: 1879. Total energy = 2251.6802 kcal/mol (2250.5479 without restraints) Performing minimization step: 1880. Total energy = 2251.0432 kcal/mol (2249.9115 without restraints) Performing minimization step: 1881. Total energy = 2250.4075 kcal/mol (2249.2764 without restraints) Performing minimization step: 1882. Total energy = 2249.7730 kcal/mol (2248.6425 without restraints) Performing minimization step: 1883. Total energy = 2249.1395 kcal/mol (2248.0096 without restraints) Performing minimization step: 1884. Total energy = 2248.5074 kcal/mol (2247.3781 without restraints) Performing minimization step: 1885. Total energy = 2247.8766 kcal/mol (2246.7478 without restraints) Performing minimization step: 1886. Total energy = 2247.2475 kcal/mol (2246.1193 without restraints) Performing minimization step: 1887. Total energy = 2246.6190 kcal/mol (2245.4915 without restraints) Performing minimization step: 1888. Total energy = 2245.9918 kcal/mol (2244.8649 without restraints) Performing minimization step: 1889. Total energy = 2245.3659 kcal/mol (2244.2395 without restraints) Performing minimization step: 1890. Total energy = 2244.7409 kcal/mol (2243.6150 without restraints) Performing minimization step: 1891. Total energy = 2244.1169 kcal/mol (2242.9918 without restraints) Performing minimization step: 1892. Total energy = 2243.4946 kcal/mol (2242.3700 without restraints) Performing minimization step: 1893. Total energy = 2242.8736 kcal/mol (2241.7497 without restraints) Performing minimization step: 1894. Total energy = 2242.2538 kcal/mol (2241.1305 without restraints) Performing minimization step: 1895. Total energy = 2241.6350 kcal/mol (2240.5122 without restraints) Performing minimization step: 1896. Total energy = 2241.0180 kcal/mol (2239.8958 without restraints) Performing minimization step: 1897. Total energy = 2240.4018 kcal/mol (2239.2801 without restraints) Performing minimization step: 1898. Total energy = 2239.7868 kcal/mol (2238.6657 without restraints) Performing minimization step: 1899. Total energy = 2239.1731 kcal/mol (2238.0526 without restraints) Performing minimization step: 1900. Total energy = 2238.5605 kcal/mol (2237.4406 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 2237.9490 kcal/mol (2236.8297 without restraints) Performing minimization step: 1902. Total energy = 2237.3384 kcal/mol (2236.2197 without restraints) Performing minimization step: 1903. Total energy = 2236.7293 kcal/mol (2235.6112 without restraints) Performing minimization step: 1904. Total energy = 2236.1213 kcal/mol (2235.0038 without restraints) Performing minimization step: 1905. Total energy = 2235.5143 kcal/mol (2234.3974 without restraints) Performing minimization step: 1906. Total energy = 2234.9085 kcal/mol (2233.7921 without restraints) Performing minimization step: 1907. Total energy = 2234.3042 kcal/mol (2233.1885 without restraints) Performing minimization step: 1908. Total energy = 2233.7010 kcal/mol (2232.5858 without restraints) Performing minimization step: 1909. Total energy = 2233.0990 kcal/mol (2231.9844 without restraints) Performing minimization step: 1910. Total energy = 2232.4981 kcal/mol (2231.3841 without restraints) Performing minimization step: 1911. Total energy = 2231.8983 kcal/mol (2230.7849 without restraints) Performing minimization step: 1912. Total energy = 2231.2998 kcal/mol (2230.1869 without restraints) Performing minimization step: 1913. Total energy = 2230.7024 kcal/mol (2229.5901 without restraints) Performing minimization step: 1914. Total energy = 2230.1062 kcal/mol (2228.9945 without restraints) Performing minimization step: 1915. Total energy = 2229.5111 kcal/mol (2228.4000 without restraints) Performing minimization step: 1916. Total energy = 2228.9172 kcal/mol (2227.8067 without restraints) Performing minimization step: 1917. Total energy = 2228.3247 kcal/mol (2227.2148 without restraints) Performing minimization step: 1918. Total energy = 2227.7329 kcal/mol (2226.6235 without restraints) Performing minimization step: 1919. Total energy = 2227.1426 kcal/mol (2226.0339 without restraints) Performing minimization step: 1920. Total energy = 2226.5534 kcal/mol (2225.4452 without restraints) Performing minimization step: 1921. Total energy = 2225.9653 kcal/mol (2224.8577 without restraints) Performing minimization step: 1922. Total energy = 2225.3783 kcal/mol (2224.2713 without restraints) Performing minimization step: 1923. Total energy = 2224.7925 kcal/mol (2223.6861 without restraints) Performing minimization step: 1924. Total energy = 2224.2078 kcal/mol (2223.1020 without restraints) Performing minimization step: 1925. Total energy = 2223.6243 kcal/mol (2222.5190 without restraints) Performing minimization step: 1926. Total energy = 2223.0419 kcal/mol (2221.9372 without restraints) Performing minimization step: 1927. Total energy = 2222.4606 kcal/mol (2221.3566 without restraints) Performing minimization step: 1928. Total energy = 2221.8807 kcal/mol (2220.7774 without restraints) Performing minimization step: 1929. Total energy = 2221.3021 kcal/mol (2220.1992 without restraints) Performing minimization step: 1930. Total energy = 2220.7244 kcal/mol (2219.6220 without restraints) Performing minimization step: 1931. Total energy = 2220.1478 kcal/mol (2219.0461 without restraints) Performing minimization step: 1932. Total energy = 2219.5723 kcal/mol (2218.4711 without restraints) Performing minimization step: 1933. Total energy = 2218.9979 kcal/mol (2217.8975 without restraints) Performing minimization step: 1934. Total energy = 2218.4247 kcal/mol (2217.3247 without restraints) Performing minimization step: 1935. Total energy = 2217.8524 kcal/mol (2216.7530 without restraints) Performing minimization step: 1936. Total energy = 2217.2814 kcal/mol (2216.1824 without restraints) Performing minimization step: 1937. Total energy = 2216.7115 kcal/mol (2215.6132 without restraints) Performing minimization step: 1938. Total energy = 2216.1426 kcal/mol (2215.0449 without restraints) Performing minimization step: 1939. Total energy = 2215.5751 kcal/mol (2214.4779 without restraints) Performing minimization step: 1940. Total energy = 2215.0082 kcal/mol (2213.9116 without restraints) Performing minimization step: 1941. Total energy = 2214.4426 kcal/mol (2213.3467 without restraints) Performing minimization step: 1942. Total energy = 2213.8780 kcal/mol (2212.7826 without restraints) Performing minimization step: 1943. Total energy = 2213.3147 kcal/mol (2212.2198 without restraints) Performing minimization step: 1944. Total energy = 2212.7524 kcal/mol (2211.6581 without restraints) Performing minimization step: 1945. Total energy = 2212.1915 kcal/mol (2211.0977 without restraints) Performing minimization step: 1946. Total energy = 2211.6311 kcal/mol (2210.5379 without restraints) Performing minimization step: 1947. Total energy = 2211.0721 kcal/mol (2209.9795 without restraints) Performing minimization step: 1948. Total energy = 2210.5143 kcal/mol (2209.4223 without restraints) Performing minimization step: 1949. Total energy = 2209.9575 kcal/mol (2208.8661 without restraints) Performing minimization step: 1950. Total energy = 2209.4017 kcal/mol (2208.3109 without restraints) Performing minimization step: 1951. Total energy = 2208.8470 kcal/mol (2207.7566 without restraints) Performing minimization step: 1952. Total energy = 2208.2933 kcal/mol (2207.2035 without restraints) Performing minimization step: 1953. Total energy = 2207.7411 kcal/mol (2206.6522 without restraints) Performing minimization step: 1954. Total energy = 2207.1900 kcal/mol (2206.1014 without restraints) Performing minimization step: 1955. Total energy = 2206.6396 kcal/mol (2205.5516 without restraints) Performing minimization step: 1956. Total energy = 2206.0903 kcal/mol (2205.0029 without restraints) Performing minimization step: 1957. Total energy = 2205.5425 kcal/mol (2204.4557 without restraints) Performing minimization step: 1958. Total energy = 2204.9954 kcal/mol (2203.9091 without restraints) Performing minimization step: 1959. Total energy = 2204.4493 kcal/mol (2203.3635 without restraints) Performing minimization step: 1960. Total energy = 2203.9042 kcal/mol (2202.8191 without restraints) Performing minimization step: 1961. Total energy = 2203.3602 kcal/mol (2202.2756 without restraints) Performing minimization step: 1962. Total energy = 2202.8173 kcal/mol (2201.7333 without restraints) Performing minimization step: 1963. Total energy = 2202.2755 kcal/mol (2201.1920 without restraints) Performing minimization step: 1964. Total energy = 2201.7349 kcal/mol (2200.6520 without restraints) Performing minimization step: 1965. Total energy = 2201.1951 kcal/mol (2200.1127 without restraints) Performing minimization step: 1966. Total energy = 2200.6566 kcal/mol (2199.5749 without restraints) Performing minimization step: 1967. Total energy = 2200.1189 kcal/mol (2199.0377 without restraints) Performing minimization step: 1968. Total energy = 2199.5821 kcal/mol (2198.5015 without restraints) Performing minimization step: 1969. Total energy = 2199.0467 kcal/mol (2197.9666 without restraints) Performing minimization step: 1970. Total energy = 2198.5123 kcal/mol (2197.4328 without restraints) Performing minimization step: 1971. Total energy = 2197.9788 kcal/mol (2196.9000 without restraints) Performing minimization step: 1972. Total energy = 2197.4465 kcal/mol (2196.3681 without restraints) Performing minimization step: 1973. Total energy = 2196.9150 kcal/mol (2195.8372 without restraints) Performing minimization step: 1974. Total energy = 2196.3846 kcal/mol (2195.3073 without restraints) Performing minimization step: 1975. Total energy = 2195.8554 kcal/mol (2194.7787 without restraints) Performing minimization step: 1976. Total energy = 2195.3270 kcal/mol (2194.2509 without restraints) Performing minimization step: 1977. Total energy = 2194.7998 kcal/mol (2193.7243 without restraints) Performing minimization step: 1978. Total energy = 2194.2735 kcal/mol (2193.1985 without restraints) Performing minimization step: 1979. Total energy = 2193.7484 kcal/mol (2192.6741 without restraints) Performing minimization step: 1980. Total energy = 2193.2243 kcal/mol (2192.1504 without restraints) Performing minimization step: 1981. Total energy = 2192.7009 kcal/mol (2191.6276 without restraints) Performing minimization step: 1982. Total energy = 2192.1786 kcal/mol (2191.1058 without restraints) Performing minimization step: 1983. Total energy = 2191.6574 kcal/mol (2190.5852 without restraints) Performing minimization step: 1984. Total energy = 2191.1376 kcal/mol (2190.0661 without restraints) Performing minimization step: 1985. Total energy = 2190.6187 kcal/mol (2189.5477 without restraints) Performing minimization step: 1986. Total energy = 2190.1005 kcal/mol (2189.0299 without restraints) Performing minimization step: 1987. Total energy = 2189.5831 kcal/mol (2188.5131 without restraints) Performing minimization step: 1988. Total energy = 2189.0667 kcal/mol (2187.9973 without restraints) Performing minimization step: 1989. Total energy = 2188.5514 kcal/mol (2187.4825 without restraints) Performing minimization step: 1990. Total energy = 2188.0372 kcal/mol (2186.9689 without restraints) Performing minimization step: 1991. Total energy = 2187.5238 kcal/mol (2186.4561 without restraints) Performing minimization step: 1992. Total energy = 2187.0115 kcal/mol (2185.9442 without restraints) Performing minimization step: 1993. Total energy = 2186.5005 kcal/mol (2185.4338 without restraints) Performing minimization step: 1994. Total energy = 2185.9900 kcal/mol (2184.9239 without restraints) Performing minimization step: 1995. Total energy = 2185.4806 kcal/mol (2184.4150 without restraints) Performing minimization step: 1996. Total energy = 2184.9721 kcal/mol (2183.9072 without restraints) Performing minimization step: 1997. Total energy = 2184.4643 kcal/mol (2183.3999 without restraints) Performing minimization step: 1998. Total energy = 2183.9578 kcal/mol (2182.8939 without restraints) Performing minimization step: 1999. Total energy = 2183.4522 kcal/mol (2182.3888 without restraints) Performing minimization step: 2000. Total energy = 2182.9475 kcal/mol (2181.8847 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 2182.4439 kcal/mol (2181.3818 without restraints) Performing minimization step: 2002. Total energy = 2181.9413 kcal/mol (2180.8796 without restraints) Performing minimization step: 2003. Total energy = 2181.4395 kcal/mol (2180.3783 without restraints) Performing minimization step: 2004. Total energy = 2180.9389 kcal/mol (2179.8782 without restraints) Performing minimization step: 2005. Total energy = 2180.4390 kcal/mol (2179.3789 without restraints) Performing minimization step: 2006. Total energy = 2179.9404 kcal/mol (2178.8808 without restraints) Performing minimization step: 2007. Total energy = 2179.4424 kcal/mol (2178.3834 without restraints) Performing minimization step: 2008. Total energy = 2178.9454 kcal/mol (2177.8870 without restraints) Performing minimization step: 2009. Total energy = 2178.4493 kcal/mol (2177.3914 without restraints) Performing minimization step: 2010. Total energy = 2177.9541 kcal/mol (2176.8968 without restraints) Performing minimization step: 2011. Total energy = 2177.4599 kcal/mol (2176.4031 without restraints) Performing minimization step: 2012. Total energy = 2176.9666 kcal/mol (2175.9104 without restraints) Performing minimization step: 2013. Total energy = 2176.4742 kcal/mol (2175.4185 without restraints) Performing minimization step: 2014. Total energy = 2175.9828 kcal/mol (2174.9277 without restraints) Performing minimization step: 2015. Total energy = 2175.4922 kcal/mol (2174.4375 without restraints) Performing minimization step: 2016. Total energy = 2175.0025 kcal/mol (2173.9484 without restraints) Performing minimization step: 2017. Total energy = 2174.5139 kcal/mol (2173.4603 without restraints) Performing minimization step: 2018. Total energy = 2174.0263 kcal/mol (2172.9733 without restraints) Performing minimization step: 2019. Total energy = 2173.5397 kcal/mol (2172.4872 without restraints) Performing minimization step: 2020. Total energy = 2173.0538 kcal/mol (2172.0018 without restraints) Performing minimization step: 2021. Total energy = 2172.5688 kcal/mol (2171.5174 without restraints) Performing minimization step: 2022. Total energy = 2172.0846 kcal/mol (2171.0338 without restraints) Performing minimization step: 2023. Total energy = 2171.6016 kcal/mol (2170.5512 without restraints) Performing minimization step: 2024. Total energy = 2171.1194 kcal/mol (2170.0696 without restraints) Performing minimization step: 2025. Total energy = 2170.6382 kcal/mol (2169.5889 without restraints) Performing minimization step: 2026. Total energy = 2170.1576 kcal/mol (2169.1089 without restraints) Performing minimization step: 2027. Total energy = 2169.6780 kcal/mol (2168.6298 without restraints) Performing minimization step: 2028. Total energy = 2169.1991 kcal/mol (2168.1515 without restraints) Performing minimization step: 2029. Total energy = 2168.7212 kcal/mol (2167.6741 without restraints) Performing minimization step: 2030. Total energy = 2168.2443 kcal/mol (2167.1978 without restraints) Performing minimization step: 2031. Total energy = 2167.7679 kcal/mol (2166.7219 without restraints) Performing minimization step: 2032. Total energy = 2167.2925 kcal/mol (2166.2470 without restraints) Performing minimization step: 2033. Total energy = 2166.8181 kcal/mol (2165.7732 without restraints) Performing minimization step: 2034. Total energy = 2166.3445 kcal/mol (2165.3001 without restraints) Performing minimization step: 2035. Total energy = 2165.8721 kcal/mol (2164.8283 without restraints) Performing minimization step: 2036. Total energy = 2165.4005 kcal/mol (2164.3571 without restraints) Performing minimization step: 2037. Total energy = 2164.9297 kcal/mol (2163.8868 without restraints) Performing minimization step: 2038. Total energy = 2164.4596 kcal/mol (2163.4173 without restraints) Performing minimization step: 2039. Total energy = 2163.9906 kcal/mol (2162.9488 without restraints) Performing minimization step: 2040. Total energy = 2163.5224 kcal/mol (2162.4811 without restraints) Performing minimization step: 2041. Total energy = 2163.0552 kcal/mol (2162.0145 without restraints) Performing minimization step: 2042. Total energy = 2162.5887 kcal/mol (2161.5485 without restraints) Performing minimization step: 2043. Total energy = 2162.1230 kcal/mol (2161.0833 without restraints) Performing minimization step: 2044. Total energy = 2161.6582 kcal/mol (2160.6191 without restraints) Performing minimization step: 2045. Total energy = 2161.1945 kcal/mol (2160.1559 without restraints) Performing minimization step: 2046. Total energy = 2160.7315 kcal/mol (2159.6934 without restraints) Performing minimization step: 2047. Total energy = 2160.2693 kcal/mol (2159.2318 without restraints) Performing minimization step: 2048. Total energy = 2159.8081 kcal/mol (2158.7710 without restraints) Performing minimization step: 2049. Total energy = 2159.3475 kcal/mol (2158.3110 without restraints) Performing minimization step: 2050. Total energy = 2158.8877 kcal/mol (2157.8517 without restraints) Performing minimization step: 2051. Total energy = 2158.4288 kcal/mol (2157.3933 without restraints) Performing minimization step: 2052. Total energy = 2157.9707 kcal/mol (2156.9358 without restraints) Performing minimization step: 2053. Total energy = 2157.5135 kcal/mol (2156.4791 without restraints) Performing minimization step: 2054. Total energy = 2157.0575 kcal/mol (2156.0236 without restraints) Performing minimization step: 2055. Total energy = 2156.6016 kcal/mol (2155.5682 without restraints) Performing minimization step: 2056. Total energy = 2156.1469 kcal/mol (2155.1139 without restraints) Performing minimization step: 2057. Total energy = 2155.6932 kcal/mol (2154.6609 without restraints) Performing minimization step: 2058. Total energy = 2155.2404 kcal/mol (2154.2086 without restraints) Performing minimization step: 2059. Total energy = 2154.7883 kcal/mol (2153.7570 without restraints) Performing minimization step: 2060. Total energy = 2154.3370 kcal/mol (2153.3062 without restraints) Performing minimization step: 2061. Total energy = 2153.8867 kcal/mol (2152.8564 without restraints) Performing minimization step: 2062. Total energy = 2153.4370 kcal/mol (2152.4073 without restraints) Performing minimization step: 2063. Total energy = 2152.9880 kcal/mol (2151.9588 without restraints) Performing minimization step: 2064. Total energy = 2152.5398 kcal/mol (2151.5110 without restraints) Performing minimization step: 2065. Total energy = 2152.0923 kcal/mol (2151.0641 without restraints) Performing minimization step: 2066. Total energy = 2151.6457 kcal/mol (2150.6180 without restraints) Performing minimization step: 2067. Total energy = 2151.1998 kcal/mol (2150.1727 without restraints) Performing minimization step: 2068. Total energy = 2150.7556 kcal/mol (2149.7289 without restraints) Performing minimization step: 2069. Total energy = 2150.3113 kcal/mol (2149.2851 without restraints) Performing minimization step: 2070. Total energy = 2149.8678 kcal/mol (2148.8422 without restraints) Performing minimization step: 2071. Total energy = 2149.4252 kcal/mol (2148.4001 without restraints) Performing minimization step: 2072. Total energy = 2148.9834 kcal/mol (2147.9587 without restraints) Performing minimization step: 2073. Total energy = 2148.5424 kcal/mol (2147.5183 without restraints) Performing minimization step: 2074. Total energy = 2148.1021 kcal/mol (2147.0785 without restraints) Performing minimization step: 2075. Total energy = 2147.6628 kcal/mol (2146.6397 without restraints) Performing minimization step: 2076. Total energy = 2147.2242 kcal/mol (2146.2016 without restraints) Performing minimization step: 2077. Total energy = 2146.7860 kcal/mol (2145.7639 without restraints) Performing minimization step: 2078. Total energy = 2146.3488 kcal/mol (2145.3272 without restraints) Performing minimization step: 2079. Total energy = 2145.9123 kcal/mol (2144.8913 without restraints) Performing minimization step: 2080. Total energy = 2145.4767 kcal/mol (2144.4561 without restraints) Performing minimization step: 2081. Total energy = 2145.0418 kcal/mol (2144.0217 without restraints) Performing minimization step: 2082. Total energy = 2144.6077 kcal/mol (2143.5881 without restraints) Performing minimization step: 2083. Total energy = 2144.1743 kcal/mol (2143.1552 without restraints) Performing minimization step: 2084. Total energy = 2143.7418 kcal/mol (2142.7233 without restraints) Performing minimization step: 2085. Total energy = 2143.3099 kcal/mol (2142.2919 without restraints) Performing minimization step: 2086. Total energy = 2142.8790 kcal/mol (2141.8615 without restraints) Performing minimization step: 2087. Total energy = 2142.4488 kcal/mol (2141.4318 without restraints) Performing minimization step: 2088. Total energy = 2142.0193 kcal/mol (2141.0028 without restraints) Performing minimization step: 2089. Total energy = 2141.5902 kcal/mol (2140.5741 without restraints) Performing minimization step: 2090. Total energy = 2141.1623 kcal/mol (2140.1467 without restraints) Performing minimization step: 2091. Total energy = 2140.7350 kcal/mol (2139.7200 without restraints) Performing minimization step: 2092. Total energy = 2140.3084 kcal/mol (2139.2938 without restraints) Performing minimization step: 2093. Total energy = 2139.8824 kcal/mol (2138.8684 without restraints) Performing minimization step: 2094. Total energy = 2139.4576 kcal/mol (2138.4441 without restraints) Performing minimization step: 2095. Total energy = 2139.0332 kcal/mol (2138.0202 without restraints) Performing minimization step: 2096. Total energy = 2138.6096 kcal/mol (2137.5970 without restraints) Performing minimization step: 2097. Total energy = 2138.1866 kcal/mol (2137.1746 without restraints) Performing minimization step: 2098. Total energy = 2137.7644 kcal/mol (2136.7529 without restraints) Performing minimization step: 2099. Total energy = 2137.3431 kcal/mol (2136.3321 without restraints) Performing minimization step: 2100. Total energy = 2136.9225 kcal/mol (2135.9119 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 2136.5024 kcal/mol (2135.4924 without restraints) Performing minimization step: 2102. Total energy = 2136.0832 kcal/mol (2135.0736 without restraints) Performing minimization step: 2103. Total energy = 2135.6646 kcal/mol (2134.6555 without restraints) Performing minimization step: 2104. Total energy = 2135.2468 kcal/mol (2134.2382 without restraints) Performing minimization step: 2105. Total energy = 2134.8296 kcal/mol (2133.8215 without restraints) Performing minimization step: 2106. Total energy = 2134.4133 kcal/mol (2133.4057 without restraints) Performing minimization step: 2107. Total energy = 2133.9972 kcal/mol (2132.9901 without restraints) Performing minimization step: 2108. Total energy = 2133.5823 kcal/mol (2132.5756 without restraints) Performing minimization step: 2109. Total energy = 2133.1679 kcal/mol (2132.1618 without restraints) Performing minimization step: 2110. Total energy = 2132.7542 kcal/mol (2131.7484 without restraints) Performing minimization step: 2111. Total energy = 2132.3410 kcal/mol (2131.3358 without restraints) Performing minimization step: 2112. Total energy = 2131.9288 kcal/mol (2130.9241 without restraints) Performing minimization step: 2113. Total energy = 2131.5172 kcal/mol (2130.5129 without restraints) Performing minimization step: 2114. Total energy = 2131.1064 kcal/mol (2130.1027 without restraints) Performing minimization step: 2115. Total energy = 2130.6968 kcal/mol (2129.6936 without restraints) Performing minimization step: 2116. Total energy = 2130.2873 kcal/mol (2129.2846 without restraints) Performing minimization step: 2117. Total energy = 2129.8789 kcal/mol (2128.8767 without restraints) Performing minimization step: 2118. Total energy = 2129.4711 kcal/mol (2128.4694 without restraints) Performing minimization step: 2119. Total energy = 2129.0638 kcal/mol (2128.0625 without restraints) Performing minimization step: 2120. Total energy = 2128.6569 kcal/mol (2127.6561 without restraints) Performing minimization step: 2121. Total energy = 2128.2509 kcal/mol (2127.2506 without restraints) Performing minimization step: 2122. Total energy = 2127.8455 kcal/mol (2126.8457 without restraints) Performing minimization step: 2123. Total energy = 2127.4409 kcal/mol (2126.4416 without restraints) Performing minimization step: 2124. Total energy = 2127.0369 kcal/mol (2126.0381 without restraints) Performing minimization step: 2125. Total energy = 2126.6340 kcal/mol (2125.6359 without restraints) Performing minimization step: 2126. Total energy = 2126.2319 kcal/mol (2125.2339 without restraints) Performing minimization step: 2127. Total energy = 2125.8299 kcal/mol (2124.8325 without restraints) Performing minimization step: 2128. Total energy = 2125.4285 kcal/mol (2124.4315 without restraints) Performing minimization step: 2129. Total energy = 2125.0278 kcal/mol (2124.0313 without restraints) Performing minimization step: 2130. Total energy = 2124.6279 kcal/mol (2123.6318 without restraints) Performing minimization step: 2131. Total energy = 2124.2290 kcal/mol (2123.2334 without restraints) Performing minimization step: 2132. Total energy = 2123.8303 kcal/mol (2122.8352 without restraints) Performing minimization step: 2133. Total energy = 2123.4325 kcal/mol (2122.4379 without restraints) Performing minimization step: 2134. Total energy = 2123.0353 kcal/mol (2122.0413 without restraints) Performing minimization step: 2135. Total energy = 2122.6388 kcal/mol (2121.6451 without restraints) Performing minimization step: 2136. Total energy = 2122.2430 kcal/mol (2121.2498 without restraints) Performing minimization step: 2137. Total energy = 2121.8477 kcal/mol (2120.8550 without restraints) Performing minimization step: 2138. Total energy = 2121.4530 kcal/mol (2120.4607 without restraints) Performing minimization step: 2139. Total energy = 2121.0589 kcal/mol (2120.0671 without restraints) Performing minimization step: 2140. Total energy = 2120.6655 kcal/mol (2119.6742 without restraints) Performing minimization step: 2141. Total energy = 2120.2728 kcal/mol (2119.2819 without restraints) Performing minimization step: 2142. Total energy = 2119.8806 kcal/mol (2118.8902 without restraints) Performing minimization step: 2143. Total energy = 2119.4891 kcal/mol (2118.4993 without restraints) Performing minimization step: 2144. Total energy = 2119.0986 kcal/mol (2118.1091 without restraints) Performing minimization step: 2145. Total energy = 2118.7083 kcal/mol (2117.7193 without restraints) Performing minimization step: 2146. Total energy = 2118.3187 kcal/mol (2117.3302 without restraints) Performing minimization step: 2147. Total energy = 2117.9297 kcal/mol (2116.9417 without restraints) Performing minimization step: 2148. Total energy = 2117.5420 kcal/mol (2116.5544 without restraints) Performing minimization step: 2149. Total energy = 2117.1543 kcal/mol (2116.1672 without restraints) Performing minimization step: 2150. Total energy = 2116.7675 kcal/mol (2115.7808 without restraints) Performing minimization step: 2151. Total energy = 2116.3815 kcal/mol (2115.3955 without restraints) Performing minimization step: 2152. Total energy = 2115.9959 kcal/mol (2115.0102 without restraints) Performing minimization step: 2153. Total energy = 2115.6107 kcal/mol (2114.6255 without restraints) Performing minimization step: 2154. Total energy = 2115.2260 kcal/mol (2114.2411 without restraints) Performing minimization step: 2155. Total energy = 2114.8418 kcal/mol (2113.8574 without restraints) Performing minimization step: 2156. Total energy = 2114.4581 kcal/mol (2113.4743 without restraints) Performing minimization step: 2157. Total energy = 2114.0756 kcal/mol (2113.0922 without restraints) Performing minimization step: 2158. Total energy = 2113.6936 kcal/mol (2112.7107 without restraints) Performing minimization step: 2159. Total energy = 2113.3122 kcal/mol (2112.3297 without restraints) Performing minimization step: 2160. Total energy = 2112.9313 kcal/mol (2111.9492 without restraints) Performing minimization step: 2161. Total energy = 2112.5510 kcal/mol (2111.5694 without restraints) Performing minimization step: 2162. Total energy = 2112.1713 kcal/mol (2111.1901 without restraints) Performing minimization step: 2163. Total energy = 2111.7922 kcal/mol (2110.8115 without restraints) Performing minimization step: 2164. Total energy = 2111.4137 kcal/mol (2110.4335 without restraints) Performing minimization step: 2165. Total energy = 2111.0358 kcal/mol (2110.0561 without restraints) Performing minimization step: 2166. Total energy = 2110.6585 kcal/mol (2109.6792 without restraints) Performing minimization step: 2167. Total energy = 2110.2820 kcal/mol (2109.3031 without restraints) Performing minimization step: 2168. Total energy = 2109.9061 kcal/mol (2108.9277 without restraints) Performing minimization step: 2169. Total energy = 2109.5306 kcal/mol (2108.5526 without restraints) Performing minimization step: 2170. Total energy = 2109.1558 kcal/mol (2108.1783 without restraints) Performing minimization step: 2171. Total energy = 2108.7814 kcal/mol (2107.8044 without restraints) Performing minimization step: 2172. Total energy = 2108.4080 kcal/mol (2107.4315 without restraints) Performing minimization step: 2173. Total energy = 2108.0348 kcal/mol (2107.0585 without restraints) Performing minimization step: 2174. Total energy = 2107.6620 kcal/mol (2106.6863 without restraints) Performing minimization step: 2175. Total energy = 2107.2901 kcal/mol (2106.3150 without restraints) Performing minimization step: 2176. Total energy = 2106.9188 kcal/mol (2105.9440 without restraints) Performing minimization step: 2177. Total energy = 2106.5480 kcal/mol (2105.5737 without restraints) Performing minimization step: 2178. Total energy = 2106.1777 kcal/mol (2105.2037 without restraints) Performing minimization step: 2179. Total energy = 2105.8079 kcal/mol (2104.8344 without restraints) Performing minimization step: 2180. Total energy = 2105.4386 kcal/mol (2104.4656 without restraints) Performing minimization step: 2181. Total energy = 2105.0701 kcal/mol (2104.0975 without restraints) Performing minimization step: 2182. Total energy = 2104.7021 kcal/mol (2103.7300 without restraints) Performing minimization step: 2183. Total energy = 2104.3345 kcal/mol (2103.3628 without restraints) Performing minimization step: 2184. Total energy = 2103.9679 kcal/mol (2102.9967 without restraints) Performing minimization step: 2185. Total energy = 2103.6017 kcal/mol (2102.6309 without restraints) Performing minimization step: 2186. Total energy = 2103.2367 kcal/mol (2102.2663 without restraints) Performing minimization step: 2187. Total energy = 2102.8713 kcal/mol (2101.9012 without restraints) Performing minimization step: 2188. Total energy = 2102.5066 kcal/mol (2101.5371 without restraints) Performing minimization step: 2189. Total energy = 2102.1423 kcal/mol (2101.1733 without restraints) Performing minimization step: 2190. Total energy = 2101.7792 kcal/mol (2100.8107 without restraints) Performing minimization step: 2191. Total energy = 2101.4164 kcal/mol (2100.4482 without restraints) Performing minimization step: 2192. Total energy = 2101.0539 kcal/mol (2100.0861 without restraints) Performing minimization step: 2193. Total energy = 2100.6926 kcal/mol (2099.7252 without restraints) Performing minimization step: 2194. Total energy = 2100.3314 kcal/mol (2099.3646 without restraints) Performing minimization step: 2195. Total energy = 2099.9713 kcal/mol (2099.0050 without restraints) Performing minimization step: 2196. Total energy = 2099.6115 kcal/mol (2098.6455 without restraints) Performing minimization step: 2197. Total energy = 2099.2519 kcal/mol (2098.2863 without restraints) Performing minimization step: 2198. Total energy = 2098.8928 kcal/mol (2097.9275 without restraints) Performing minimization step: 2199. Total energy = 2098.5341 kcal/mol (2097.5694 without restraints) Performing minimization step: 2200. Total energy = 2098.1762 kcal/mol (2097.2119 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 2097.8188 kcal/mol (2096.8549 without restraints) Performing minimization step: 2202. Total energy = 2097.4619 kcal/mol (2096.4984 without restraints) Performing minimization step: 2203. Total energy = 2097.1057 kcal/mol (2096.1427 without restraints) Performing minimization step: 2204. Total energy = 2096.7500 kcal/mol (2095.7874 without restraints) Performing minimization step: 2205. Total energy = 2096.3947 kcal/mol (2095.4325 without restraints) Performing minimization step: 2206. Total energy = 2096.0399 kcal/mol (2095.0782 without restraints) Performing minimization step: 2207. Total energy = 2095.6857 kcal/mol (2094.7244 without restraints) Performing minimization step: 2208. Total energy = 2095.3322 kcal/mol (2094.3713 without restraints) Performing minimization step: 2209. Total energy = 2094.9790 kcal/mol (2094.0186 without restraints) Performing minimization step: 2210. Total energy = 2094.6262 kcal/mol (2093.6661 without restraints) Performing minimization step: 2211. Total energy = 2094.2741 kcal/mol (2093.3144 without restraints) Performing minimization step: 2212. Total energy = 2093.9227 kcal/mol (2092.9635 without restraints) Performing minimization step: 2213. Total energy = 2093.5715 kcal/mol (2092.6127 without restraints) Performing minimization step: 2214. Total energy = 2093.2209 kcal/mol (2092.2625 without restraints) Performing minimization step: 2215. Total energy = 2092.8707 kcal/mol (2091.9128 without restraints) Performing minimization step: 2216. Total energy = 2092.5218 kcal/mol (2091.5643 without restraints) Performing minimization step: 2217. Total energy = 2092.1728 kcal/mol (2091.2157 without restraints) Performing minimization step: 2218. Total energy = 2091.8242 kcal/mol (2090.8675 without restraints) Performing minimization step: 2219. Total energy = 2091.4767 kcal/mol (2090.5204 without restraints) Performing minimization step: 2220. Total energy = 2091.1295 kcal/mol (2090.1736 without restraints) Performing minimization step: 2221. Total energy = 2090.7830 kcal/mol (2089.8275 without restraints) Performing minimization step: 2222. Total energy = 2090.4368 kcal/mol (2089.4818 without restraints) Performing minimization step: 2223. Total energy = 2090.0910 kcal/mol (2089.1364 without restraints) Performing minimization step: 2224. Total energy = 2089.7457 kcal/mol (2088.7916 without restraints) Performing minimization step: 2225. Total energy = 2089.4009 kcal/mol (2088.4471 without restraints) Performing minimization step: 2226. Total energy = 2089.0570 kcal/mol (2088.1037 without restraints) Performing minimization step: 2227. Total energy = 2088.7133 kcal/mol (2087.7603 without restraints) Performing minimization step: 2228. Total energy = 2088.3699 kcal/mol (2087.4173 without restraints) Performing minimization step: 2229. Total energy = 2088.0269 kcal/mol (2087.0748 without restraints) Performing minimization step: 2230. Total energy = 2087.6844 kcal/mol (2086.7326 without restraints) Performing minimization step: 2231. Total energy = 2087.3425 kcal/mol (2086.3913 without restraints) Performing minimization step: 2232. Total energy = 2087.0016 kcal/mol (2086.0507 without restraints) Performing minimization step: 2233. Total energy = 2086.6607 kcal/mol (2085.7102 without restraints) Performing minimization step: 2234. Total energy = 2086.3209 kcal/mol (2085.3708 without restraints) Performing minimization step: 2235. Total energy = 2085.9809 kcal/mol (2085.0313 without restraints) Performing minimization step: 2236. Total energy = 2085.6417 kcal/mol (2084.6925 without restraints) Performing minimization step: 2237. Total energy = 2085.3029 kcal/mol (2084.3540 without restraints) Performing minimization step: 2238. Total energy = 2084.9642 kcal/mol (2084.0157 without restraints) Performing minimization step: 2239. Total energy = 2084.6262 kcal/mol (2083.6782 without restraints) Performing minimization step: 2240. Total energy = 2084.2888 kcal/mol (2083.3411 without restraints) Performing minimization step: 2241. Total energy = 2083.9522 kcal/mol (2083.0051 without restraints) Performing minimization step: 2242. Total energy = 2083.6163 kcal/mol (2082.6697 without restraints) Performing minimization step: 2243. Total energy = 2083.2805 kcal/mol (2082.3341 without restraints) Performing minimization step: 2244. Total energy = 2082.9450 kcal/mol (2081.9989 without restraints) Performing minimization step: 2245. Total energy = 2082.6099 kcal/mol (2081.6643 without restraints) Performing minimization step: 2246. Total energy = 2082.2752 kcal/mol (2081.3300 without restraints) Performing minimization step: 2247. Total energy = 2081.9411 kcal/mol (2080.9962 without restraints) Performing minimization step: 2248. Total energy = 2081.6075 kcal/mol (2080.6630 without restraints) Performing minimization step: 2249. Total energy = 2081.2747 kcal/mol (2080.3307 without restraints) Performing minimization step: 2250. Total energy = 2080.9420 kcal/mol (2079.9983 without restraints) Performing minimization step: 2251. Total energy = 2080.6097 kcal/mol (2079.6665 without restraints) Performing minimization step: 2252. Total energy = 2080.2787 kcal/mol (2079.3358 without restraints) Performing minimization step: 2253. Total energy = 2079.9474 kcal/mol (2079.0049 without restraints) Performing minimization step: 2254. Total energy = 2079.6165 kcal/mol (2078.6745 without restraints) Performing minimization step: 2255. Total energy = 2079.2864 kcal/mol (2078.3447 without restraints) Performing minimization step: 2256. Total energy = 2078.9565 kcal/mol (2078.0152 without restraints) Performing minimization step: 2257. Total energy = 2078.6269 kcal/mol (2077.6861 without restraints) Performing minimization step: 2258. Total energy = 2078.2978 kcal/mol (2077.3572 without restraints) Performing minimization step: 2259. Total energy = 2077.9693 kcal/mol (2077.0291 without restraints) Performing minimization step: 2260. Total energy = 2077.6412 kcal/mol (2076.7015 without restraints) Performing minimization step: 2261. Total energy = 2077.3136 kcal/mol (2076.3742 without restraints) Performing minimization step: 2262. Total energy = 2076.9868 kcal/mol (2076.0480 without restraints) Performing minimization step: 2263. Total energy = 2076.6600 kcal/mol (2075.7215 without restraints) Performing minimization step: 2264. Total energy = 2076.3340 kcal/mol (2075.3958 without restraints) Performing minimization step: 2265. Total energy = 2076.0082 kcal/mol (2075.0704 without restraints) Performing minimization step: 2266. Total energy = 2075.6829 kcal/mol (2074.7455 without restraints) Performing minimization step: 2267. Total energy = 2075.3579 kcal/mol (2074.4209 without restraints) Performing minimization step: 2268. Total energy = 2075.0336 kcal/mol (2074.0971 without restraints) Performing minimization step: 2269. Total energy = 2074.7098 kcal/mol (2073.7736 without restraints) Performing minimization step: 2270. Total energy = 2074.3860 kcal/mol (2073.4501 without restraints) Performing minimization step: 2271. Total energy = 2074.0629 kcal/mol (2073.1275 without restraints) Performing minimization step: 2272. Total energy = 2073.7406 kcal/mol (2072.8054 without restraints) Performing minimization step: 2273. Total energy = 2073.4184 kcal/mol (2072.4837 without restraints) Performing minimization step: 2274. Total energy = 2073.0967 kcal/mol (2072.1624 without restraints) Performing minimization step: 2275. Total energy = 2072.7757 kcal/mol (2071.8417 without restraints) Performing minimization step: 2276. Total energy = 2072.4549 kcal/mol (2071.5215 without restraints) Performing minimization step: 2277. Total energy = 2072.1348 kcal/mol (2071.2016 without restraints) Performing minimization step: 2278. Total energy = 2071.8148 kcal/mol (2070.8820 without restraints) Performing minimization step: 2279. Total energy = 2071.4953 kcal/mol (2070.5628 without restraints) Performing minimization step: 2280. Total energy = 2071.1761 kcal/mol (2070.2440 without restraints) Performing minimization step: 2281. Total energy = 2070.8574 kcal/mol (2069.9256 without restraints) Performing minimization step: 2282. Total energy = 2070.5394 kcal/mol (2069.6081 without restraints) Performing minimization step: 2283. Total energy = 2070.2217 kcal/mol (2069.2908 without restraints) Performing minimization step: 2284. Total energy = 2069.9043 kcal/mol (2068.9737 without restraints) Performing minimization step: 2285. Total energy = 2069.5878 kcal/mol (2068.6578 without restraints) Performing minimization step: 2286. Total energy = 2069.2714 kcal/mol (2068.3415 without restraints) Performing minimization step: 2287. Total energy = 2068.9554 kcal/mol (2068.0259 without restraints) Performing minimization step: 2288. Total energy = 2068.6399 kcal/mol (2067.7108 without restraints) Performing minimization step: 2289. Total energy = 2068.3246 kcal/mol (2067.3958 without restraints) Performing minimization step: 2290. Total energy = 2068.0097 kcal/mol (2067.0814 without restraints) Performing minimization step: 2291. Total energy = 2067.6955 kcal/mol (2066.7675 without restraints) Performing minimization step: 2292. Total energy = 2067.3814 kcal/mol (2066.4538 without restraints) Performing minimization step: 2293. Total energy = 2067.0681 kcal/mol (2066.1408 without restraints) Performing minimization step: 2294. Total energy = 2066.7551 kcal/mol (2065.8282 without restraints) Performing minimization step: 2295. Total energy = 2066.4423 kcal/mol (2065.5158 without restraints) Performing minimization step: 2296. Total energy = 2066.1304 kcal/mol (2065.2042 without restraints) Performing minimization step: 2297. Total energy = 2065.8185 kcal/mol (2064.8927 without restraints) Performing minimization step: 2298. Total energy = 2065.5072 kcal/mol (2064.5819 without restraints) Performing minimization step: 2299. Total energy = 2065.1963 kcal/mol (2064.2712 without restraints) Performing minimization step: 2300. Total energy = 2064.8858 kcal/mol (2063.9611 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 2064.5755 kcal/mol (2063.6511 without restraints) Performing minimization step: 2302. Total energy = 2064.2656 kcal/mol (2063.3416 without restraints) Performing minimization step: 2303. Total energy = 2063.9561 kcal/mol (2063.0325 without restraints) Performing minimization step: 2304. Total energy = 2063.6470 kcal/mol (2062.7237 without restraints) Performing minimization step: 2305. Total energy = 2063.3384 kcal/mol (2062.4154 without restraints) Performing minimization step: 2306. Total energy = 2063.0301 kcal/mol (2062.1075 without restraints) Performing minimization step: 2307. Total energy = 2062.7220 kcal/mol (2061.7998 without restraints) Performing minimization step: 2308. Total energy = 2062.4146 kcal/mol (2061.4927 without restraints) Performing minimization step: 2309. Total energy = 2062.1076 kcal/mol (2061.1861 without restraints) Performing minimization step: 2310. Total energy = 2061.8007 kcal/mol (2060.8796 without restraints) Performing minimization step: 2311. Total energy = 2061.4950 kcal/mol (2060.5743 without restraints) Performing minimization step: 2312. Total energy = 2061.1893 kcal/mol (2060.2688 without restraints) Performing minimization step: 2313. Total energy = 2060.8839 kcal/mol (2059.9638 without restraints) Performing minimization step: 2314. Total energy = 2060.5784 kcal/mol (2059.6587 without restraints) Performing minimization step: 2315. Total energy = 2060.2738 kcal/mol (2059.3544 without restraints) Performing minimization step: 2316. Total energy = 2059.9696 kcal/mol (2059.0505 without restraints) Performing minimization step: 2317. Total energy = 2059.6657 kcal/mol (2058.7470 without restraints) Performing minimization step: 2318. Total energy = 2059.3623 kcal/mol (2058.4438 without restraints) Performing minimization step: 2319. Total energy = 2059.0593 kcal/mol (2058.1414 without restraints) Performing minimization step: 2320. Total energy = 2058.7567 kcal/mol (2057.8390 without restraints) Performing minimization step: 2321. Total energy = 2058.4542 kcal/mol (2057.5369 without restraints) Performing minimization step: 2322. Total energy = 2058.1523 kcal/mol (2057.2353 without restraints) Performing minimization step: 2323. Total energy = 2057.8508 kcal/mol (2056.9342 without restraints) Performing minimization step: 2324. Total energy = 2057.5495 kcal/mol (2056.6332 without restraints) Performing minimization step: 2325. Total energy = 2057.2488 kcal/mol (2056.3330 without restraints) Performing minimization step: 2326. Total energy = 2056.9485 kcal/mol (2056.0330 without restraints) Performing minimization step: 2327. Total energy = 2056.6487 kcal/mol (2055.7336 without restraints) Performing minimization step: 2328. Total energy = 2056.3494 kcal/mol (2055.4346 without restraints) Performing minimization step: 2329. Total energy = 2056.0502 kcal/mol (2055.1357 without restraints) Performing minimization step: 2330. Total energy = 2055.7517 kcal/mol (2054.8377 without restraints) Performing minimization step: 2331. Total energy = 2055.4534 kcal/mol (2054.5396 without restraints) Performing minimization step: 2332. Total energy = 2055.1554 kcal/mol (2054.2419 without restraints) Performing minimization step: 2333. Total energy = 2054.8578 kcal/mol (2053.9447 without restraints) Performing minimization step: 2334. Total energy = 2054.5606 kcal/mol (2053.6478 without restraints) Performing minimization step: 2335. Total energy = 2054.2640 kcal/mol (2053.3515 without restraints) Performing minimization step: 2336. Total energy = 2053.9676 kcal/mol (2053.0554 without restraints) Performing minimization step: 2337. Total energy = 2053.6714 kcal/mol (2052.7595 without restraints) Performing minimization step: 2338. Total energy = 2053.3758 kcal/mol (2052.4643 without restraints) Performing minimization step: 2339. Total energy = 2053.0804 kcal/mol (2052.1692 without restraints) Performing minimization step: 2340. Total energy = 2052.7857 kcal/mol (2051.8749 without restraints) Performing minimization step: 2341. Total energy = 2052.4910 kcal/mol (2051.5806 without restraints) Performing minimization step: 2342. Total energy = 2052.1970 kcal/mol (2051.2870 without restraints) Performing minimization step: 2343. Total energy = 2051.9032 kcal/mol (2050.9934 without restraints) Performing minimization step: 2344. Total energy = 2051.6097 kcal/mol (2050.7002 without restraints) Performing minimization step: 2345. Total energy = 2051.3167 kcal/mol (2050.4075 without restraints) Performing minimization step: 2346. Total energy = 2051.0243 kcal/mol (2050.1155 without restraints) Performing minimization step: 2347. Total energy = 2050.7318 kcal/mol (2049.8232 without restraints) Performing minimization step: 2348. Total energy = 2050.4399 kcal/mol (2049.5319 without restraints) Performing minimization step: 2349. Total energy = 2050.1488 kcal/mol (2049.2410 without restraints) Performing minimization step: 2350. Total energy = 2049.8574 kcal/mol (2048.9499 without restraints) Performing minimization step: 2351. Total energy = 2049.5664 kcal/mol (2048.6592 without restraints) Performing minimization step: 2352. Total energy = 2049.2758 kcal/mol (2048.3691 without restraints) Performing minimization step: 2353. Total energy = 2048.9857 kcal/mol (2048.0792 without restraints) Performing minimization step: 2354. Total energy = 2048.6958 kcal/mol (2047.7896 without restraints) Performing minimization step: 2355. Total energy = 2048.4062 kcal/mol (2047.5003 without restraints) Performing minimization step: 2356. Total energy = 2048.1170 kcal/mol (2047.2114 without restraints) Performing minimization step: 2357. Total energy = 2047.8284 kcal/mol (2046.9232 without restraints) Performing minimization step: 2358. Total energy = 2047.5399 kcal/mol (2046.6350 without restraints) Performing minimization step: 2359. Total energy = 2047.2522 kcal/mol (2046.3476 without restraints) Performing minimization step: 2360. Total energy = 2046.9644 kcal/mol (2046.0601 without restraints) Performing minimization step: 2361. Total energy = 2046.6770 kcal/mol (2045.7730 without restraints) Performing minimization step: 2362. Total energy = 2046.3901 kcal/mol (2045.4865 without restraints) Performing minimization step: 2363. Total energy = 2046.1034 kcal/mol (2045.2001 without restraints) Performing minimization step: 2364. Total energy = 2045.8173 kcal/mol (2044.9143 without restraints) Performing minimization step: 2365. Total energy = 2045.5316 kcal/mol (2044.6289 without restraints) Performing minimization step: 2366. Total energy = 2045.2462 kcal/mol (2044.3438 without restraints) Performing minimization step: 2367. Total energy = 2044.9611 kcal/mol (2044.0590 without restraints) Performing minimization step: 2368. Total energy = 2044.6762 kcal/mol (2043.7745 without restraints) Performing minimization step: 2369. Total energy = 2044.3914 kcal/mol (2043.4900 without restraints) Performing minimization step: 2370. Total energy = 2044.1074 kcal/mol (2043.2063 without restraints) Performing minimization step: 2371. Total energy = 2043.8237 kcal/mol (2042.9229 without restraints) Performing minimization step: 2372. Total energy = 2043.5401 kcal/mol (2042.6395 without restraints) Performing minimization step: 2373. Total energy = 2043.2568 kcal/mol (2042.3566 without restraints) Performing minimization step: 2374. Total energy = 2042.9738 kcal/mol (2042.0740 without restraints) Performing minimization step: 2375. Total energy = 2042.6913 kcal/mol (2041.7917 without restraints) Performing minimization step: 2376. Total energy = 2042.4091 kcal/mol (2041.5098 without restraints) Performing minimization step: 2377. Total energy = 2042.1273 kcal/mol (2041.2283 without restraints) Performing minimization step: 2378. Total energy = 2041.8458 kcal/mol (2040.9471 without restraints) Performing minimization step: 2379. Total energy = 2041.5645 kcal/mol (2040.6662 without restraints) Performing minimization step: 2380. Total energy = 2041.2836 kcal/mol (2040.3856 without restraints) Performing minimization step: 2381. Total energy = 2041.0033 kcal/mol (2040.1055 without restraints) Performing minimization step: 2382. Total energy = 2040.7232 kcal/mol (2039.8259 without restraints) Performing minimization step: 2383. Total energy = 2040.4435 kcal/mol (2039.5464 without restraints) Performing minimization step: 2384. Total energy = 2040.1642 kcal/mol (2039.2674 without restraints) Performing minimization step: 2385. Total energy = 2039.8851 kcal/mol (2038.9886 without restraints) Performing minimization step: 2386. Total energy = 2039.6063 kcal/mol (2038.7101 without restraints) Performing minimization step: 2387. Total energy = 2039.3277 kcal/mol (2038.4319 without restraints) Performing minimization step: 2388. Total energy = 2039.0494 kcal/mol (2038.1538 without restraints) Performing minimization step: 2389. Total energy = 2038.7717 kcal/mol (2037.8764 without restraints) Performing minimization step: 2390. Total energy = 2038.4942 kcal/mol (2037.5992 without restraints) Performing minimization step: 2391. Total energy = 2038.2172 kcal/mol (2037.3225 without restraints) Performing minimization step: 2392. Total energy = 2037.9404 kcal/mol (2037.0460 without restraints) Performing minimization step: 2393. Total energy = 2037.6641 kcal/mol (2036.7700 without restraints) Performing minimization step: 2394. Total energy = 2037.3878 kcal/mol (2036.4940 without restraints) Performing minimization step: 2395. Total energy = 2037.1122 kcal/mol (2036.2189 without restraints) Performing minimization step: 2396. Total energy = 2036.8366 kcal/mol (2035.9434 without restraints) Performing minimization step: 2397. Total energy = 2036.5616 kcal/mol (2035.6687 without restraints) Performing minimization step: 2398. Total energy = 2036.2866 kcal/mol (2035.3940 without restraints) Performing minimization step: 2399. Total energy = 2036.0123 kcal/mol (2035.1199 without restraints) Performing minimization step: 2400. Total energy = 2035.7382 kcal/mol (2034.8462 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 2035.4644 kcal/mol (2034.5725 without restraints) Performing minimization step: 2402. Total energy = 2035.1913 kcal/mol (2034.3000 without restraints) Performing minimization step: 2403. Total energy = 2034.9182 kcal/mol (2034.0270 without restraints) Performing minimization step: 2404. Total energy = 2034.6456 kcal/mol (2033.7547 without restraints) Performing minimization step: 2405. Total energy = 2034.3730 kcal/mol (2033.4826 without restraints) Performing minimization step: 2406. Total energy = 2034.1009 kcal/mol (2033.2106 without restraints) Performing minimization step: 2407. Total energy = 2033.8289 kcal/mol (2032.9389 without restraints) Performing minimization step: 2408. Total energy = 2033.5576 kcal/mol (2032.6679 without restraints) Performing minimization step: 2409. Total energy = 2033.2863 kcal/mol (2032.3969 without restraints) Performing minimization step: 2410. Total energy = 2033.0155 kcal/mol (2032.1263 without restraints) Performing minimization step: 2411. Total energy = 2032.7451 kcal/mol (2031.8562 without restraints) Performing minimization step: 2412. Total energy = 2032.4746 kcal/mol (2031.5861 without restraints) Performing minimization step: 2413. Total energy = 2032.2043 kcal/mol (2031.3160 without restraints) Performing minimization step: 2414. Total energy = 2031.9345 kcal/mol (2031.0465 without restraints) Performing minimization step: 2415. Total energy = 2031.6654 kcal/mol (2030.7779 without restraints) Performing minimization step: 2416. Total energy = 2031.3967 kcal/mol (2030.5093 without restraints) Performing minimization step: 2417. Total energy = 2031.1281 kcal/mol (2030.2409 without restraints) Performing minimization step: 2418. Total energy = 2030.8590 kcal/mol (2029.9722 without restraints) Performing minimization step: 2419. Total energy = 2030.5910 kcal/mol (2029.7045 without restraints) Performing minimization step: 2420. Total energy = 2030.3231 kcal/mol (2029.4368 without restraints) Performing minimization step: 2421. Total energy = 2030.0557 kcal/mol (2029.1697 without restraints) Performing minimization step: 2422. Total energy = 2029.7886 kcal/mol (2028.9028 without restraints) Performing minimization step: 2423. Total energy = 2029.5217 kcal/mol (2028.6362 without restraints) Performing minimization step: 2424. Total energy = 2029.2550 kcal/mol (2028.3698 without restraints) Performing minimization step: 2425. Total energy = 2028.9888 kcal/mol (2028.1039 without restraints) Performing minimization step: 2426. Total energy = 2028.7231 kcal/mol (2027.8384 without restraints) Performing minimization step: 2427. Total energy = 2028.4574 kcal/mol (2027.5731 without restraints) Performing minimization step: 2428. Total energy = 2028.1920 kcal/mol (2027.3080 without restraints) Performing minimization step: 2429. Total energy = 2027.9271 kcal/mol (2027.0434 without restraints) Performing minimization step: 2430. Total energy = 2027.6620 kcal/mol (2026.7785 without restraints) Performing minimization step: 2431. Total energy = 2027.3974 kcal/mol (2026.5142 without restraints) Performing minimization step: 2432. Total energy = 2027.1332 kcal/mol (2026.2501 without restraints) Performing minimization step: 2433. Total energy = 2026.8692 kcal/mol (2025.9866 without restraints) Performing minimization step: 2434. Total energy = 2026.6059 kcal/mol (2025.7234 without restraints) Performing minimization step: 2435. Total energy = 2026.3429 kcal/mol (2025.4607 without restraints) Performing minimization step: 2436. Total energy = 2026.0798 kcal/mol (2025.1978 without restraints) Performing minimization step: 2437. Total energy = 2025.8169 kcal/mol (2024.9353 without restraints) Performing minimization step: 2438. Total energy = 2025.5545 kcal/mol (2024.6732 without restraints) Performing minimization step: 2439. Total energy = 2025.2926 kcal/mol (2024.4115 without restraints) Performing minimization step: 2440. Total energy = 2025.0309 kcal/mol (2024.1501 without restraints) Performing minimization step: 2441. Total energy = 2024.7693 kcal/mol (2023.8887 without restraints) Performing minimization step: 2442. Total energy = 2024.5080 kcal/mol (2023.6277 without restraints) Performing minimization step: 2443. Total energy = 2024.2470 kcal/mol (2023.3670 without restraints) Performing minimization step: 2444. Total energy = 2023.9863 kcal/mol (2023.1065 without restraints) Performing minimization step: 2445. Total energy = 2023.7258 kcal/mol (2022.8463 without restraints) Performing minimization step: 2446. Total energy = 2023.4658 kcal/mol (2022.5866 without restraints) Performing minimization step: 2447. Total energy = 2023.2060 kcal/mol (2022.3270 without restraints) Performing minimization step: 2448. Total energy = 2022.9467 kcal/mol (2022.0679 without restraints) Performing minimization step: 2449. Total energy = 2022.6878 kcal/mol (2021.8093 without restraints) Performing minimization step: 2450. Total energy = 2022.4290 kcal/mol (2021.5508 without restraints) Performing minimization step: 2451. Total energy = 2022.1703 kcal/mol (2021.2922 without restraints) Performing minimization step: 2452. Total energy = 2021.9120 kcal/mol (2021.0343 without restraints) Performing minimization step: 2453. Total energy = 2021.6539 kcal/mol (2020.7765 without restraints) Performing minimization step: 2454. Total energy = 2021.3961 kcal/mol (2020.5189 without restraints) Performing minimization step: 2455. Total energy = 2021.1386 kcal/mol (2020.2616 without restraints) Performing minimization step: 2456. Total energy = 2020.8813 kcal/mol (2020.0046 without restraints) Performing minimization step: 2457. Total energy = 2020.6245 kcal/mol (2019.7481 without restraints) Performing minimization step: 2458. Total energy = 2020.3680 kcal/mol (2019.4918 without restraints) Performing minimization step: 2459. Total energy = 2020.1116 kcal/mol (2019.2357 without restraints) Performing minimization step: 2460. Total energy = 2019.8555 kcal/mol (2018.9798 without restraints) Performing minimization step: 2461. Total energy = 2019.5996 kcal/mol (2018.7242 without restraints) Performing minimization step: 2462. Total energy = 2019.3441 kcal/mol (2018.4689 without restraints) Performing minimization step: 2463. Total energy = 2019.0891 kcal/mol (2018.2142 without restraints) Performing minimization step: 2464. Total energy = 2018.8343 kcal/mol (2017.9597 without restraints) Performing minimization step: 2465. Total energy = 2018.5798 kcal/mol (2017.7055 without restraints) Performing minimization step: 2466. Total energy = 2018.3256 kcal/mol (2017.4515 without restraints) Performing minimization step: 2467. Total energy = 2018.0719 kcal/mol (2017.1980 without restraints) Performing minimization step: 2468. Total energy = 2017.8178 kcal/mol (2016.9442 without restraints) Performing minimization step: 2469. Total energy = 2017.5640 kcal/mol (2016.6907 without restraints) Performing minimization step: 2470. Total energy = 2017.3106 kcal/mol (2016.4374 without restraints) Performing minimization step: 2471. Total energy = 2017.0575 kcal/mol (2016.1846 without restraints) Performing minimization step: 2472. Total energy = 2016.8051 kcal/mol (2015.9325 without restraints) Performing minimization step: 2473. Total energy = 2016.5530 kcal/mol (2015.6807 without restraints) Performing minimization step: 2474. Total energy = 2016.3009 kcal/mol (2015.4287 without restraints) Performing minimization step: 2475. Total energy = 2016.0491 kcal/mol (2015.1771 without restraints) Performing minimization step: 2476. Total energy = 2015.7976 kcal/mol (2014.9259 without restraints) Performing minimization step: 2477. Total energy = 2015.5460 kcal/mol (2014.6745 without restraints) Performing minimization step: 2478. Total energy = 2015.2951 kcal/mol (2014.4238 without restraints) Performing minimization step: 2479. Total energy = 2015.0442 kcal/mol (2014.1732 without restraints) Performing minimization step: 2480. Total energy = 2014.7937 kcal/mol (2013.9229 without restraints) Performing minimization step: 2481. Total energy = 2014.5438 kcal/mol (2013.6733 without restraints) Performing minimization step: 2482. Total energy = 2014.2938 kcal/mol (2013.4235 without restraints) Performing minimization step: 2483. Total energy = 2014.0447 kcal/mol (2013.1747 without restraints) Performing minimization step: 2484. Total energy = 2013.7953 kcal/mol (2012.9255 without restraints) Performing minimization step: 2485. Total energy = 2013.5460 kcal/mol (2012.6765 without restraints) Performing minimization step: 2486. Total energy = 2013.2971 kcal/mol (2012.4278 without restraints) Performing minimization step: 2487. Total energy = 2013.0484 kcal/mol (2012.1793 without restraints) Performing minimization step: 2488. Total energy = 2012.8001 kcal/mol (2011.9313 without restraints) Performing minimization step: 2489. Total energy = 2012.5524 kcal/mol (2011.6838 without restraints) Performing minimization step: 2490. Total energy = 2012.3045 kcal/mol (2011.4362 without restraints) Performing minimization step: 2491. Total energy = 2012.0569 kcal/mol (2011.1888 without restraints) Performing minimization step: 2492. Total energy = 2011.8096 kcal/mol (2010.9417 without restraints) Performing minimization step: 2493. Total energy = 2011.5628 kcal/mol (2010.6952 without restraints) Performing minimization step: 2494. Total energy = 2011.3160 kcal/mol (2010.4484 without restraints) Performing minimization step: 2495. Total energy = 2011.0695 kcal/mol (2010.2023 without restraints) Performing minimization step: 2496. Total energy = 2010.8234 kcal/mol (2009.9564 without restraints) Performing minimization step: 2497. Total energy = 2010.5772 kcal/mol (2009.7104 without restraints) Performing minimization step: 2498. Total energy = 2010.3315 kcal/mol (2009.4651 without restraints) Performing minimization step: 2499. Total energy = 2010.0862 kcal/mol (2009.2200 without restraints) Performing minimization step: 2500. Total energy = 2009.8413 kcal/mol (2008.9752 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 2009.5964 kcal/mol (2008.7306 without restraints) Performing minimization step: 2502. Total energy = 2009.3517 kcal/mol (2008.4861 without restraints) Performing minimization step: 2503. Total energy = 2009.1073 kcal/mol (2008.2419 without restraints) Performing minimization step: 2504. Total energy = 2008.8632 kcal/mol (2007.9980 without restraints) Performing minimization step: 2505. Total energy = 2008.6192 kcal/mol (2007.7543 without restraints) Performing minimization step: 2506. Total energy = 2008.3757 kcal/mol (2007.5110 without restraints) Performing minimization step: 2507. Total energy = 2008.1323 kcal/mol (2007.2679 without restraints) Performing minimization step: 2508. Total energy = 2007.8893 kcal/mol (2007.0250 without restraints) Performing minimization step: 2509. Total energy = 2007.6464 kcal/mol (2006.7823 without restraints) Performing minimization step: 2510. Total energy = 2007.4041 kcal/mol (2006.5403 without restraints) Performing minimization step: 2511. Total energy = 2007.1617 kcal/mol (2006.2981 without restraints) Performing minimization step: 2512. Total energy = 2006.9202 kcal/mol (2006.0568 without restraints) Performing minimization step: 2513. Total energy = 2006.6783 kcal/mol (2005.8151 without restraints) Performing minimization step: 2514. Total energy = 2006.4369 kcal/mol (2005.5740 without restraints) Performing minimization step: 2515. Total energy = 2006.1959 kcal/mol (2005.3332 without restraints) Performing minimization step: 2516. Total energy = 2005.9549 kcal/mol (2005.0924 without restraints) Performing minimization step: 2517. Total energy = 2005.7141 kcal/mol (2004.8518 without restraints) Performing minimization step: 2518. Total energy = 2005.4738 kcal/mol (2004.6119 without restraints) Performing minimization step: 2519. Total energy = 2005.2336 kcal/mol (2004.3717 without restraints) Performing minimization step: 2520. Total energy = 2004.9937 kcal/mol (2004.1320 without restraints) Performing minimization step: 2521. Total energy = 2004.7538 kcal/mol (2003.8924 without restraints) Performing minimization step: 2522. Total energy = 2004.5141 kcal/mol (2003.6526 without restraints) Performing minimization step: 2523. Total energy = 2004.2745 kcal/mol (2003.4135 without restraints) Performing minimization step: 2524. Total energy = 2004.0354 kcal/mol (2003.1746 without restraints) Performing minimization step: 2525. Total energy = 2003.7965 kcal/mol (2002.9359 without restraints) Performing minimization step: 2526. Total energy = 2003.5580 kcal/mol (2002.6976 without restraints) Performing minimization step: 2527. Total energy = 2003.3195 kcal/mol (2002.4592 without restraints) Performing minimization step: 2528. Total energy = 2003.0815 kcal/mol (2002.2216 without restraints) Performing minimization step: 2529. Total energy = 2002.8438 kcal/mol (2001.9841 without restraints) Performing minimization step: 2530. Total energy = 2002.6062 kcal/mol (2001.7467 without restraints) Performing minimization step: 2531. Total energy = 2002.3690 kcal/mol (2001.5097 without restraints) Performing minimization step: 2532. Total energy = 2002.1319 kcal/mol (2001.2728 without restraints) Performing minimization step: 2533. Total energy = 2001.8951 kcal/mol (2001.0361 without restraints) Performing minimization step: 2534. Total energy = 2001.6586 kcal/mol (2000.7999 without restraints) Performing minimization step: 2535. Total energy = 2001.4220 kcal/mol (2000.5635 without restraints) Performing minimization step: 2536. Total energy = 2001.1858 kcal/mol (2000.3275 without restraints) Performing minimization step: 2537. Total energy = 2000.9499 kcal/mol (2000.0918 without restraints) Performing minimization step: 2538. Total energy = 2000.7142 kcal/mol (1999.8563 without restraints) Performing minimization step: 2539. Total energy = 2000.4790 kcal/mol (1999.6213 without restraints) Performing minimization step: 2540. Total energy = 2000.2438 kcal/mol (1999.3864 without restraints) Performing minimization step: 2541. Total energy = 2000.0089 kcal/mol (1999.1516 without restraints) Performing minimization step: 2542. Total energy = 1999.7742 kcal/mol (1998.9171 without restraints) Performing minimization step: 2543. Total energy = 1999.5398 kcal/mol (1998.6829 without restraints) Performing minimization step: 2544. Total energy = 1999.3056 kcal/mol (1998.4489 without restraints) Performing minimization step: 2545. Total energy = 1999.0716 kcal/mol (1998.2151 without restraints) Performing minimization step: 2546. Total energy = 1998.8378 kcal/mol (1997.9815 without restraints) Performing minimization step: 2547. Total energy = 1998.6043 kcal/mol (1997.7483 without restraints) Performing minimization step: 2548. Total energy = 1998.3709 kcal/mol (1997.5149 without restraints) Performing minimization step: 2549. Total energy = 1998.1378 kcal/mol (1997.2821 without restraints) Performing minimization step: 2550. Total energy = 1997.9053 kcal/mol (1997.0499 without restraints) Performing minimization step: 2551. Total energy = 1997.6729 kcal/mol (1996.8177 without restraints) Performing minimization step: 2552. Total energy = 1997.4408 kcal/mol (1996.5858 without restraints) Performing minimization step: 2553. Total energy = 1997.2089 kcal/mol (1996.3540 without restraints) Performing minimization step: 2554. Total energy = 1996.9771 kcal/mol (1996.1224 without restraints) Performing minimization step: 2555. Total energy = 1996.7455 kcal/mol (1995.8910 without restraints) Performing minimization step: 2556. Total energy = 1996.5142 kcal/mol (1995.6599 without restraints) Performing minimization step: 2557. Total energy = 1996.2836 kcal/mol (1995.4296 without restraints) Performing minimization step: 2558. Total energy = 1996.0530 kcal/mol (1995.1990 without restraints) Performing minimization step: 2559. Total energy = 1995.8225 kcal/mol (1994.9687 without restraints) Performing minimization step: 2560. Total energy = 1995.5918 kcal/mol (1994.7382 without restraints) Performing minimization step: 2561. Total energy = 1995.3616 kcal/mol (1994.5083 without restraints) Performing minimization step: 2562. Total energy = 1995.1320 kcal/mol (1994.2790 without restraints) Performing minimization step: 2563. Total energy = 1994.9024 kcal/mol (1994.0494 without restraints) Performing minimization step: 2564. Total energy = 1994.6729 kcal/mol (1993.8202 without restraints) Performing minimization step: 2565. Total energy = 1994.4440 kcal/mol (1993.5914 without restraints) Performing minimization step: 2566. Total energy = 1994.2151 kcal/mol (1993.3627 without restraints) Performing minimization step: 2567. Total energy = 1993.9863 kcal/mol (1993.1341 without restraints) Performing minimization step: 2568. Total energy = 1993.7578 kcal/mol (1992.9057 without restraints) Performing minimization step: 2569. Total energy = 1993.5294 kcal/mol (1992.6775 without restraints) Performing minimization step: 2570. Total energy = 1993.3017 kcal/mol (1992.4500 without restraints) Performing minimization step: 2571. Total energy = 1993.0738 kcal/mol (1992.2223 without restraints) Performing minimization step: 2572. Total energy = 1992.8466 kcal/mol (1991.9953 without restraints) Performing minimization step: 2573. Total energy = 1992.6192 kcal/mol (1991.7680 without restraints) Performing minimization step: 2574. Total energy = 1992.3920 kcal/mol (1991.5410 without restraints) Performing minimization step: 2575. Total energy = 1992.1650 kcal/mol (1991.3142 without restraints) Performing minimization step: 2576. Total energy = 1991.9380 kcal/mol (1991.0874 without restraints) Performing minimization step: 2577. Total energy = 1991.7115 kcal/mol (1990.8611 without restraints) Performing minimization step: 2578. Total energy = 1991.4856 kcal/mol (1990.6354 without restraints) Performing minimization step: 2579. Total energy = 1991.2598 kcal/mol (1990.4097 without restraints) Performing minimization step: 2580. Total energy = 1991.0340 kcal/mol (1990.1841 without restraints) Performing minimization step: 2581. Total energy = 1990.8085 kcal/mol (1989.9590 without restraints) Performing minimization step: 2582. Total energy = 1990.5833 kcal/mol (1989.7339 without restraints) Performing minimization step: 2583. Total energy = 1990.3582 kcal/mol (1989.5089 without restraints) Performing minimization step: 2584. Total energy = 1990.1333 kcal/mol (1989.2841 without restraints) Performing minimization step: 2585. Total energy = 1989.9085 kcal/mol (1989.0595 without restraints) Performing minimization step: 2586. Total energy = 1989.6841 kcal/mol (1988.8354 without restraints) Performing minimization step: 2587. Total energy = 1989.4599 kcal/mol (1988.6113 without restraints) Performing minimization step: 2588. Total energy = 1989.2361 kcal/mol (1988.3876 without restraints) Performing minimization step: 2589. Total energy = 1989.0121 kcal/mol (1988.1638 without restraints) Performing minimization step: 2590. Total energy = 1988.7888 kcal/mol (1987.9408 without restraints) Performing minimization step: 2591. Total energy = 1988.5660 kcal/mol (1987.7181 without restraints) Performing minimization step: 2592. Total energy = 1988.3429 kcal/mol (1987.4951 without restraints) Performing minimization step: 2593. Total energy = 1988.1202 kcal/mol (1987.2726 without restraints) Performing minimization step: 2594. Total energy = 1987.8979 kcal/mol (1987.0505 without restraints) Performing minimization step: 2595. Total energy = 1987.6756 kcal/mol (1986.8284 without restraints) Performing minimization step: 2596. Total energy = 1987.4533 kcal/mol (1986.6062 without restraints) Performing minimization step: 2597. Total energy = 1987.2313 kcal/mol (1986.3843 without restraints) Performing minimization step: 2598. Total energy = 1987.0096 kcal/mol (1986.1628 without restraints) Performing minimization step: 2599. Total energy = 1986.7880 kcal/mol (1985.9414 without restraints) Performing minimization step: 2600. Total energy = 1986.5668 kcal/mol (1985.7204 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 1986.3458 kcal/mol (1985.4995 without restraints) Performing minimization step: 2602. Total energy = 1986.1248 kcal/mol (1985.2787 without restraints) Performing minimization step: 2603. Total energy = 1985.9040 kcal/mol (1985.0580 without restraints) Performing minimization step: 2604. Total energy = 1985.6836 kcal/mol (1984.8378 without restraints) Performing minimization step: 2605. Total energy = 1985.4632 kcal/mol (1984.6176 without restraints) Performing minimization step: 2606. Total energy = 1985.2434 kcal/mol (1984.3980 without restraints) Performing minimization step: 2607. Total energy = 1985.0233 kcal/mol (1984.1780 without restraints) Performing minimization step: 2608. Total energy = 1984.8036 kcal/mol (1983.9585 without restraints) Performing minimization step: 2609. Total energy = 1984.5844 kcal/mol (1983.7394 without restraints) Performing minimization step: 2610. Total energy = 1984.3658 kcal/mol (1983.5210 without restraints) Performing minimization step: 2611. Total energy = 1984.1471 kcal/mol (1983.3025 without restraints) Performing minimization step: 2612. Total energy = 1983.9285 kcal/mol (1983.0840 without restraints) Performing minimization step: 2613. Total energy = 1983.7103 kcal/mol (1982.8659 without restraints) Performing minimization step: 2614. Total energy = 1983.4919 kcal/mol (1982.6477 without restraints) Performing minimization step: 2615. Total energy = 1983.2736 kcal/mol (1982.4296 without restraints) Performing minimization step: 2616. Total energy = 1983.0556 kcal/mol (1982.2117 without restraints) Performing minimization step: 2617. Total energy = 1982.8379 kcal/mol (1981.9943 without restraints) Performing minimization step: 2618. Total energy = 1982.6206 kcal/mol (1981.7772 without restraints) Performing minimization step: 2619. Total energy = 1982.4034 kcal/mol (1981.5600 without restraints) Performing minimization step: 2620. Total energy = 1982.1861 kcal/mol (1981.3429 without restraints) Performing minimization step: 2621. Total energy = 1981.9692 kcal/mol (1981.1261 without restraints) Performing minimization step: 2622. Total energy = 1981.7525 kcal/mol (1980.9096 without restraints) Performing minimization step: 2623. Total energy = 1981.5360 kcal/mol (1980.6933 without restraints) Performing minimization step: 2624. Total energy = 1981.3195 kcal/mol (1980.4769 without restraints) Performing minimization step: 2625. Total energy = 1981.1038 kcal/mol (1980.2613 without restraints) Performing minimization step: 2626. Total energy = 1980.8884 kcal/mol (1980.0461 without restraints) Performing minimization step: 2627. Total energy = 1980.6727 kcal/mol (1979.8306 without restraints) Performing minimization step: 2628. Total energy = 1980.4573 kcal/mol (1979.6153 without restraints) Performing minimization step: 2629. Total energy = 1980.2420 kcal/mol (1979.4002 without restraints) Performing minimization step: 2630. Total energy = 1980.0270 kcal/mol (1979.1853 without restraints) Performing minimization step: 2631. Total energy = 1979.8119 kcal/mol (1978.9704 without restraints) Performing minimization step: 2632. Total energy = 1979.5974 kcal/mol (1978.7558 without restraints) Performing minimization step: 2633. Total energy = 1979.3826 kcal/mol (1978.5414 without restraints) Performing minimization step: 2634. Total energy = 1979.1685 kcal/mol (1978.3273 without restraints) Performing minimization step: 2635. Total energy = 1978.9547 kcal/mol (1978.1138 without restraints) Performing minimization step: 2636. Total energy = 1978.7411 kcal/mol (1977.9003 without restraints) Performing minimization step: 2637. Total energy = 1978.5276 kcal/mol (1977.6869 without restraints) Performing minimization step: 2638. Total energy = 1978.3142 kcal/mol (1977.4736 without restraints) Performing minimization step: 2639. Total energy = 1978.1010 kcal/mol (1977.2606 without restraints) Performing minimization step: 2640. Total energy = 1977.8881 kcal/mol (1977.0479 without restraints) Performing minimization step: 2641. Total energy = 1977.6754 kcal/mol (1976.8353 without restraints) Performing minimization step: 2642. Total energy = 1977.4627 kcal/mol (1976.6226 without restraints) Performing minimization step: 2643. Total energy = 1977.2503 kcal/mol (1976.4104 without restraints) Performing minimization step: 2644. Total energy = 1977.0381 kcal/mol (1976.1984 without restraints) Performing minimization step: 2645. Total energy = 1976.8262 kcal/mol (1975.9866 without restraints) Performing minimization step: 2646. Total energy = 1976.6144 kcal/mol (1975.7750 without restraints) Performing minimization step: 2647. Total energy = 1976.4029 kcal/mol (1975.5636 without restraints) Performing minimization step: 2648. Total energy = 1976.1917 kcal/mol (1975.3528 without restraints) Performing minimization step: 2649. Total energy = 1975.9809 kcal/mol (1975.1420 without restraints) Performing minimization step: 2650. Total energy = 1975.7700 kcal/mol (1974.9312 without restraints) Performing minimization step: 2651. Total energy = 1975.5593 kcal/mol (1974.7205 without restraints) Performing minimization step: 2652. Total energy = 1975.3491 kcal/mol (1974.5105 without restraints) Performing minimization step: 2653. Total energy = 1975.1389 kcal/mol (1974.3006 without restraints) Performing minimization step: 2654. Total energy = 1974.9290 kcal/mol (1974.0907 without restraints) Performing minimization step: 2655. Total energy = 1974.7191 kcal/mol (1973.8809 without restraints) Performing minimization step: 2656. Total energy = 1974.5095 kcal/mol (1973.6715 without restraints) Performing minimization step: 2657. Total energy = 1974.3002 kcal/mol (1973.4625 without restraints) Performing minimization step: 2658. Total energy = 1974.0911 kcal/mol (1973.2533 without restraints) Performing minimization step: 2659. Total energy = 1973.8820 kcal/mol (1973.0445 without restraints) Performing minimization step: 2660. Total energy = 1973.6732 kcal/mol (1972.8357 without restraints) Performing minimization step: 2661. Total energy = 1973.4647 kcal/mol (1972.6273 without restraints) Performing minimization step: 2662. Total energy = 1973.2559 kcal/mol (1972.4187 without restraints) Performing minimization step: 2663. Total energy = 1973.0475 kcal/mol (1972.2104 without restraints) Performing minimization step: 2664. Total energy = 1972.8394 kcal/mol (1972.0024 without restraints) Performing minimization step: 2665. Total energy = 1972.6315 kcal/mol (1971.7947 without restraints) Performing minimization step: 2666. Total energy = 1972.4238 kcal/mol (1971.5871 without restraints) Performing minimization step: 2667. Total energy = 1972.2162 kcal/mol (1971.3796 without restraints) Performing minimization step: 2668. Total energy = 1972.0089 kcal/mol (1971.1724 without restraints) Performing minimization step: 2669. Total energy = 1971.8018 kcal/mol (1970.9655 without restraints) Performing minimization step: 2670. Total energy = 1971.5947 kcal/mol (1970.7584 without restraints) Performing minimization step: 2671. Total energy = 1971.3880 kcal/mol (1970.5520 without restraints) Performing minimization step: 2672. Total energy = 1971.1814 kcal/mol (1970.3455 without restraints) Performing minimization step: 2673. Total energy = 1970.9752 kcal/mol (1970.1394 without restraints) Performing minimization step: 2674. Total energy = 1970.7696 kcal/mol (1969.9339 without restraints) Performing minimization step: 2675. Total energy = 1970.5636 kcal/mol (1969.7280 without restraints) Performing minimization step: 2676. Total energy = 1970.3577 kcal/mol (1969.5223 without restraints) Performing minimization step: 2677. Total energy = 1970.1525 kcal/mol (1969.3172 without restraints) Performing minimization step: 2678. Total energy = 1969.9471 kcal/mol (1969.1119 without restraints) Performing minimization step: 2679. Total energy = 1969.7415 kcal/mol (1968.9063 without restraints) Performing minimization step: 2680. Total energy = 1969.5364 kcal/mol (1968.7014 without restraints) Performing minimization step: 2681. Total energy = 1969.3317 kcal/mol (1968.4969 without restraints) Performing minimization step: 2682. Total energy = 1969.1270 kcal/mol (1968.2923 without restraints) Performing minimization step: 2683. Total energy = 1968.9227 kcal/mol (1968.0882 without restraints) Performing minimization step: 2684. Total energy = 1968.7187 kcal/mol (1967.8842 without restraints) Performing minimization step: 2685. Total energy = 1968.5147 kcal/mol (1967.6804 without restraints) Performing minimization step: 2686. Total energy = 1968.3107 kcal/mol (1967.4765 without restraints) Performing minimization step: 2687. Total energy = 1968.1072 kcal/mol (1967.2731 without restraints) Performing minimization step: 2688. Total energy = 1967.9038 kcal/mol (1967.0698 without restraints) Performing minimization step: 2689. Total energy = 1967.7004 kcal/mol (1966.8665 without restraints) Performing minimization step: 2690. Total energy = 1967.4972 kcal/mol (1966.6635 without restraints) Performing minimization step: 2691. Total energy = 1967.2944 kcal/mol (1966.4608 without restraints) Performing minimization step: 2692. Total energy = 1967.0917 kcal/mol (1966.2581 without restraints) Performing minimization step: 2693. Total energy = 1966.8891 kcal/mol (1966.0557 without restraints) Performing minimization step: 2694. Total energy = 1966.6869 kcal/mol (1965.8536 without restraints) Performing minimization step: 2695. Total energy = 1966.4847 kcal/mol (1965.6515 without restraints) Performing minimization step: 2696. Total energy = 1966.2827 kcal/mol (1965.4496 without restraints) Performing minimization step: 2697. Total energy = 1966.0808 kcal/mol (1965.2479 without restraints) Performing minimization step: 2698. Total energy = 1965.8794 kcal/mol (1965.0465 without restraints) Performing minimization step: 2699. Total energy = 1965.6779 kcal/mol (1964.8452 without restraints) Performing minimization step: 2700. Total energy = 1965.4767 kcal/mol (1964.6441 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 1965.2756 kcal/mol (1964.4431 without restraints) Performing minimization step: 2702. Total energy = 1965.0747 kcal/mol (1964.2423 without restraints) Performing minimization step: 2703. Total energy = 1964.8737 kcal/mol (1964.0413 without restraints) Performing minimization step: 2704. Total energy = 1964.6733 kcal/mol (1963.8411 without restraints) Performing minimization step: 2705. Total energy = 1964.4730 kcal/mol (1963.6409 without restraints) Performing minimization step: 2706. Total energy = 1964.2729 kcal/mol (1963.4409 without restraints) Performing minimization step: 2707. Total energy = 1964.0728 kcal/mol (1963.2410 without restraints) Performing minimization step: 2708. Total energy = 1963.8731 kcal/mol (1963.0414 without restraints) Performing minimization step: 2709. Total energy = 1963.6736 kcal/mol (1962.8419 without restraints) Performing minimization step: 2710. Total energy = 1963.4744 kcal/mol (1962.6428 without restraints) Performing minimization step: 2711. Total energy = 1963.2752 kcal/mol (1962.4437 without restraints) Performing minimization step: 2712. Total energy = 1963.0763 kcal/mol (1962.2451 without restraints) Performing minimization step: 2713. Total energy = 1962.8776 kcal/mol (1962.0464 without restraints) Performing minimization step: 2714. Total energy = 1962.6789 kcal/mol (1961.8478 without restraints) Performing minimization step: 2715. Total energy = 1962.4807 kcal/mol (1961.6497 without restraints) Performing minimization step: 2716. Total energy = 1962.2827 kcal/mol (1961.4518 without restraints) Performing minimization step: 2717. Total energy = 1962.0844 kcal/mol (1961.2536 without restraints) Performing minimization step: 2718. Total energy = 1961.8863 kcal/mol (1961.0556 without restraints) Performing minimization step: 2719. Total energy = 1961.6888 kcal/mol (1960.8582 without restraints) Performing minimization step: 2720. Total energy = 1961.4914 kcal/mol (1960.6609 without restraints) Performing minimization step: 2721. Total energy = 1961.2938 kcal/mol (1960.4634 without restraints) Performing minimization step: 2722. Total energy = 1961.0968 kcal/mol (1960.2665 without restraints) Performing minimization step: 2723. Total energy = 1960.8997 kcal/mol (1960.0695 without restraints) Performing minimization step: 2724. Total energy = 1960.7028 kcal/mol (1959.8727 without restraints) Performing minimization step: 2725. Total energy = 1960.5061 kcal/mol (1959.6761 without restraints) Performing minimization step: 2726. Total energy = 1960.3098 kcal/mol (1959.4799 without restraints) Performing minimization step: 2727. Total energy = 1960.1134 kcal/mol (1959.2836 without restraints) Performing minimization step: 2728. Total energy = 1959.9173 kcal/mol (1959.0876 without restraints) Performing minimization step: 2729. Total energy = 1959.7215 kcal/mol (1958.8919 without restraints) Performing minimization step: 2730. Total energy = 1959.5258 kcal/mol (1958.6963 without restraints) Performing minimization step: 2731. Total energy = 1959.3303 kcal/mol (1958.5009 without restraints) Performing minimization step: 2732. Total energy = 1959.1348 kcal/mol (1958.3054 without restraints) Performing minimization step: 2733. Total energy = 1958.9399 kcal/mol (1958.1107 without restraints) Performing minimization step: 2734. Total energy = 1958.7444 kcal/mol (1957.9153 without restraints) Performing minimization step: 2735. Total energy = 1958.5493 kcal/mol (1957.7203 without restraints) Performing minimization step: 2736. Total energy = 1958.3546 kcal/mol (1957.5257 without restraints) Performing minimization step: 2737. Total energy = 1958.1601 kcal/mol (1957.3312 without restraints) Performing minimization step: 2738. Total energy = 1957.9657 kcal/mol (1957.1370 without restraints) Performing minimization step: 2739. Total energy = 1957.7719 kcal/mol (1956.9433 without restraints) Performing minimization step: 2740. Total energy = 1957.5780 kcal/mol (1956.7494 without restraints) Performing minimization step: 2741. Total energy = 1957.3840 kcal/mol (1956.5555 without restraints) Performing minimization step: 2742. Total energy = 1957.1903 kcal/mol (1956.3619 without restraints) Performing minimization step: 2743. Total energy = 1956.9968 kcal/mol (1956.1685 without restraints) Performing minimization step: 2744. Total energy = 1956.8036 kcal/mol (1955.9753 without restraints) Performing minimization step: 2745. Total energy = 1956.6104 kcal/mol (1955.7823 without restraints) Performing minimization step: 2746. Total energy = 1956.4175 kcal/mol (1955.5895 without restraints) Performing minimization step: 2747. Total energy = 1956.2245 kcal/mol (1955.3966 without restraints) Performing minimization step: 2748. Total energy = 1956.0328 kcal/mol (1955.2049 without restraints) Performing minimization step: 2749. Total energy = 1955.8404 kcal/mol (1955.0126 without restraints) Performing minimization step: 2750. Total energy = 1955.6482 kcal/mol (1954.8205 without restraints) Performing minimization step: 2751. Total energy = 1955.4566 kcal/mol (1954.6289 without restraints) Performing minimization step: 2752. Total energy = 1955.2647 kcal/mol (1954.4372 without restraints) Performing minimization step: 2753. Total energy = 1955.0730 kcal/mol (1954.2456 without restraints) Performing minimization step: 2754. Total energy = 1954.8813 kcal/mol (1954.0539 without restraints) Performing minimization step: 2755. Total energy = 1954.6903 kcal/mol (1953.8632 without restraints) Performing minimization step: 2756. Total energy = 1954.4999 kcal/mol (1953.6727 without restraints) Performing minimization step: 2757. Total energy = 1954.3091 kcal/mol (1953.4820 without restraints) Performing minimization step: 2758. Total energy = 1954.1187 kcal/mol (1953.2917 without restraints) Performing minimization step: 2759. Total energy = 1953.9282 kcal/mol (1953.1014 without restraints) Performing minimization step: 2760. Total energy = 1953.7381 kcal/mol (1952.9112 without restraints) Performing minimization step: 2761. Total energy = 1953.5477 kcal/mol (1952.7210 without restraints) Performing minimization step: 2762. Total energy = 1953.3577 kcal/mol (1952.5311 without restraints) Performing minimization step: 2763. Total energy = 1953.1680 kcal/mol (1952.3414 without restraints) Performing minimization step: 2764. Total energy = 1952.9782 kcal/mol (1952.1517 without restraints) Performing minimization step: 2765. Total energy = 1952.7885 kcal/mol (1951.9621 without restraints) Performing minimization step: 2766. Total energy = 1952.5994 kcal/mol (1951.7730 without restraints) Performing minimization step: 2767. Total energy = 1952.4100 kcal/mol (1951.5838 without restraints) Performing minimization step: 2768. Total energy = 1952.2210 kcal/mol (1951.3949 without restraints) Performing minimization step: 2769. Total energy = 1952.0322 kcal/mol (1951.2060 without restraints) Performing minimization step: 2770. Total energy = 1951.8434 kcal/mol (1951.0173 without restraints) Performing minimization step: 2771. Total energy = 1951.6547 kcal/mol (1950.8288 without restraints) Performing minimization step: 2772. Total energy = 1951.4663 kcal/mol (1950.6404 without restraints) Performing minimization step: 2773. Total energy = 1951.2780 kcal/mol (1950.4522 without restraints) Performing minimization step: 2774. Total energy = 1951.0901 kcal/mol (1950.2643 without restraints) Performing minimization step: 2775. Total energy = 1950.9021 kcal/mol (1950.0764 without restraints) Performing minimization step: 2776. Total energy = 1950.7143 kcal/mol (1949.8886 without restraints) Performing minimization step: 2777. Total energy = 1950.5267 kcal/mol (1949.7012 without restraints) Performing minimization step: 2778. Total energy = 1950.3395 kcal/mol (1949.5140 without restraints) Performing minimization step: 2779. Total energy = 1950.1522 kcal/mol (1949.3268 without restraints) Performing minimization step: 2780. Total energy = 1949.9651 kcal/mol (1949.1398 without restraints) Performing minimization step: 2781. Total energy = 1949.7780 kcal/mol (1948.9529 without restraints) Performing minimization step: 2782. Total energy = 1949.5916 kcal/mol (1948.7665 without restraints) Performing minimization step: 2783. Total energy = 1949.4052 kcal/mol (1948.5801 without restraints) Performing minimization step: 2784. Total energy = 1949.2189 kcal/mol (1948.3939 without restraints) Performing minimization step: 2785. Total energy = 1949.0325 kcal/mol (1948.2075 without restraints) Performing minimization step: 2786. Total energy = 1948.8464 kcal/mol (1948.0215 without restraints) Performing minimization step: 2787. Total energy = 1948.6605 kcal/mol (1947.8356 without restraints) Performing minimization step: 2788. Total energy = 1948.4747 kcal/mol (1947.6499 without restraints) Performing minimization step: 2789. Total energy = 1948.2890 kcal/mol (1947.4644 without restraints) Performing minimization step: 2790. Total energy = 1948.1036 kcal/mol (1947.2790 without restraints) Performing minimization step: 2791. Total energy = 1947.9183 kcal/mol (1947.0938 without restraints) Performing minimization step: 2792. Total energy = 1947.7333 kcal/mol (1946.9087 without restraints) Performing minimization step: 2793. Total energy = 1947.5489 kcal/mol (1946.7245 without restraints) Performing minimization step: 2794. Total energy = 1947.3644 kcal/mol (1946.5401 without restraints) Performing minimization step: 2795. Total energy = 1947.1797 kcal/mol (1946.3554 without restraints) Performing minimization step: 2796. Total energy = 1946.9948 kcal/mol (1946.1706 without restraints) Performing minimization step: 2797. Total energy = 1946.8105 kcal/mol (1945.9864 without restraints) Performing minimization step: 2798. Total energy = 1946.6264 kcal/mol (1945.8023 without restraints) Performing minimization step: 2799. Total energy = 1946.4424 kcal/mol (1945.6184 without restraints) Performing minimization step: 2800. Total energy = 1946.2583 kcal/mol (1945.4342 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 1946.0745 kcal/mol (1945.2506 without restraints) Performing minimization step: 2802. Total energy = 1945.8911 kcal/mol (1945.0672 without restraints) Performing minimization step: 2803. Total energy = 1945.7077 kcal/mol (1944.8839 without restraints) Performing minimization step: 2804. Total energy = 1945.5246 kcal/mol (1944.7010 without restraints) Performing minimization step: 2805. Total energy = 1945.3415 kcal/mol (1944.5179 without restraints) Performing minimization step: 2806. Total energy = 1945.1591 kcal/mol (1944.3356 without restraints) Performing minimization step: 2807. Total energy = 1944.9765 kcal/mol (1944.1530 without restraints) Performing minimization step: 2808. Total energy = 1944.7943 kcal/mol (1943.9708 without restraints) Performing minimization step: 2809. Total energy = 1944.6121 kcal/mol (1943.7887 without restraints) Performing minimization step: 2810. Total energy = 1944.4299 kcal/mol (1943.6066 without restraints) Performing minimization step: 2811. Total energy = 1944.2482 kcal/mol (1943.4249 without restraints) Performing minimization step: 2812. Total energy = 1944.0663 kcal/mol (1943.2431 without restraints) Performing minimization step: 2813. Total energy = 1943.8847 kcal/mol (1943.0616 without restraints) Performing minimization step: 2814. Total energy = 1943.7030 kcal/mol (1942.8798 without restraints) Performing minimization step: 2815. Total energy = 1943.5221 kcal/mol (1942.6991 without restraints) Performing minimization step: 2816. Total energy = 1943.3411 kcal/mol (1942.5181 without restraints) Performing minimization step: 2817. Total energy = 1943.1601 kcal/mol (1942.3371 without restraints) Performing minimization step: 2818. Total energy = 1942.9790 kcal/mol (1942.1560 without restraints) Performing minimization step: 2819. Total energy = 1942.7982 kcal/mol (1941.9753 without restraints) Performing minimization step: 2820. Total energy = 1942.6176 kcal/mol (1941.7948 without restraints) Performing minimization step: 2821. Total energy = 1942.4374 kcal/mol (1941.6146 without restraints) Performing minimization step: 2822. Total energy = 1942.2571 kcal/mol (1941.4344 without restraints) Performing minimization step: 2823. Total energy = 1942.0772 kcal/mol (1941.2546 without restraints) Performing minimization step: 2824. Total energy = 1941.8973 kcal/mol (1941.0747 without restraints) Performing minimization step: 2825. Total energy = 1941.7175 kcal/mol (1940.8950 without restraints) Performing minimization step: 2826. Total energy = 1941.5379 kcal/mol (1940.7155 without restraints) Performing minimization step: 2827. Total energy = 1941.3585 kcal/mol (1940.5361 without restraints) Performing minimization step: 2828. Total energy = 1941.1792 kcal/mol (1940.3568 without restraints) Performing minimization step: 2829. Total energy = 1941.0001 kcal/mol (1940.1779 without restraints) Performing minimization step: 2830. Total energy = 1940.8214 kcal/mol (1939.9991 without restraints) Performing minimization step: 2831. Total energy = 1940.6428 kcal/mol (1939.8206 without restraints) Performing minimization step: 2832. Total energy = 1940.4647 kcal/mol (1939.6425 without restraints) Performing minimization step: 2833. Total energy = 1940.2862 kcal/mol (1939.4641 without restraints) Performing minimization step: 2834. Total energy = 1940.1082 kcal/mol (1939.2861 without restraints) Performing minimization step: 2835. Total energy = 1939.9300 kcal/mol (1939.1080 without restraints) Performing minimization step: 2836. Total energy = 1939.7521 kcal/mol (1938.9301 without restraints) Performing minimization step: 2837. Total energy = 1939.5741 kcal/mol (1938.7522 without restraints) Performing minimization step: 2838. Total energy = 1939.3966 kcal/mol (1938.5747 without restraints) Performing minimization step: 2839. Total energy = 1939.2191 kcal/mol (1938.3972 without restraints) Performing minimization step: 2840. Total energy = 1939.0419 kcal/mol (1938.2201 without restraints) Performing minimization step: 2841. Total energy = 1938.8645 kcal/mol (1938.0427 without restraints) Performing minimization step: 2842. Total energy = 1938.6875 kcal/mol (1937.8658 without restraints) Performing minimization step: 2843. Total energy = 1938.5105 kcal/mol (1937.6888 without restraints) Performing minimization step: 2844. Total energy = 1938.3335 kcal/mol (1937.5120 without restraints) Performing minimization step: 2845. Total energy = 1938.1569 kcal/mol (1937.3354 without restraints) Performing minimization step: 2846. Total energy = 1937.9805 kcal/mol (1937.1590 without restraints) Performing minimization step: 2847. Total energy = 1937.8041 kcal/mol (1936.9826 without restraints) Performing minimization step: 2848. Total energy = 1937.6281 kcal/mol (1936.8067 without restraints) Performing minimization step: 2849. Total energy = 1937.4520 kcal/mol (1936.6306 without restraints) Performing minimization step: 2850. Total energy = 1937.2763 kcal/mol (1936.4550 without restraints) Performing minimization step: 2851. Total energy = 1937.1006 kcal/mol (1936.2793 without restraints) Performing minimization step: 2852. Total energy = 1936.9251 kcal/mol (1936.1038 without restraints) Performing minimization step: 2853. Total energy = 1936.7499 kcal/mol (1935.9286 without restraints) Performing minimization step: 2854. Total energy = 1936.5746 kcal/mol (1935.7534 without restraints) Performing minimization step: 2855. Total energy = 1936.3995 kcal/mol (1935.5783 without restraints) Performing minimization step: 2856. Total energy = 1936.2245 kcal/mol (1935.4033 without restraints) Performing minimization step: 2857. Total energy = 1936.0496 kcal/mol (1935.2285 without restraints) Performing minimization step: 2858. Total energy = 1935.8752 kcal/mol (1935.0541 without restraints) Performing minimization step: 2859. Total energy = 1935.7007 kcal/mol (1934.8797 without restraints) Performing minimization step: 2860. Total energy = 1935.5262 kcal/mol (1934.7054 without restraints) Performing minimization step: 2861. Total energy = 1935.3522 kcal/mol (1934.5312 without restraints) Performing minimization step: 2862. Total energy = 1935.1781 kcal/mol (1934.3572 without restraints) Performing minimization step: 2863. Total energy = 1935.0041 kcal/mol (1934.1833 without restraints) Performing minimization step: 2864. Total energy = 1934.8306 kcal/mol (1934.0098 without restraints) Performing minimization step: 2865. Total energy = 1934.6570 kcal/mol (1933.8362 without restraints) Performing minimization step: 2866. Total energy = 1934.4835 kcal/mol (1933.6628 without restraints) Performing minimization step: 2867. Total energy = 1934.3101 kcal/mol (1933.4895 without restraints) Performing minimization step: 2868. Total energy = 1934.1371 kcal/mol (1933.3165 without restraints) Performing minimization step: 2869. Total energy = 1933.9642 kcal/mol (1933.1436 without restraints) Performing minimization step: 2870. Total energy = 1933.7915 kcal/mol (1932.9709 without restraints) Performing minimization step: 2871. Total energy = 1933.6185 kcal/mol (1932.7978 without restraints) Performing minimization step: 2872. Total energy = 1933.4458 kcal/mol (1932.6252 without restraints) Performing minimization step: 2873. Total energy = 1933.2734 kcal/mol (1932.4529 without restraints) Performing minimization step: 2874. Total energy = 1933.1014 kcal/mol (1932.2809 without restraints) Performing minimization step: 2875. Total energy = 1932.9302 kcal/mol (1932.1096 without restraints) Performing minimization step: 2876. Total energy = 1932.7581 kcal/mol (1931.9376 without restraints) Performing minimization step: 2877. Total energy = 1932.5863 kcal/mol (1931.7659 without restraints) Performing minimization step: 2878. Total energy = 1932.4149 kcal/mol (1931.5947 without restraints) Performing minimization step: 2879. Total energy = 1932.2438 kcal/mol (1931.4234 without restraints) Performing minimization step: 2880. Total energy = 1932.0724 kcal/mol (1931.2521 without restraints) Performing minimization step: 2881. Total energy = 1931.9013 kcal/mol (1931.0811 without restraints) Performing minimization step: 2882. Total energy = 1931.7303 kcal/mol (1930.9101 without restraints) Performing minimization step: 2883. Total energy = 1931.5593 kcal/mol (1930.7391 without restraints) Performing minimization step: 2884. Total energy = 1931.3888 kcal/mol (1930.5686 without restraints) Performing minimization step: 2885. Total energy = 1931.2179 kcal/mol (1930.3978 without restraints) Performing minimization step: 2886. Total energy = 1931.0478 kcal/mol (1930.2280 without restraints) Performing minimization step: 2887. Total energy = 1930.8777 kcal/mol (1930.0576 without restraints) Performing minimization step: 2888. Total energy = 1930.7082 kcal/mol (1929.8882 without restraints) Performing minimization step: 2889. Total energy = 1930.5383 kcal/mol (1929.7182 without restraints) Performing minimization step: 2890. Total energy = 1930.3684 kcal/mol (1929.5483 without restraints) Performing minimization step: 2891. Total energy = 1930.1986 kcal/mol (1929.3786 without restraints) Performing minimization step: 2892. Total energy = 1930.0289 kcal/mol (1929.2090 without restraints) Performing minimization step: 2893. Total energy = 1929.8595 kcal/mol (1929.0395 without restraints) Performing minimization step: 2894. Total energy = 1929.6901 kcal/mol (1928.8702 without restraints) Performing minimization step: 2895. Total energy = 1929.5213 kcal/mol (1928.7014 without restraints) Performing minimization step: 2896. Total energy = 1929.3523 kcal/mol (1928.5325 without restraints) Performing minimization step: 2897. Total energy = 1929.1834 kcal/mol (1928.3636 without restraints) Performing minimization step: 2898. Total energy = 1929.0145 kcal/mol (1928.1947 without restraints) Performing minimization step: 2899. Total energy = 1928.8459 kcal/mol (1928.0261 without restraints) Performing minimization step: 2900. Total energy = 1928.6777 kcal/mol (1927.8579 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 1928.5094 kcal/mol (1927.6896 without restraints) Performing minimization step: 2902. Total energy = 1928.3410 kcal/mol (1927.5212 without restraints) Performing minimization step: 2903. Total energy = 1928.1730 kcal/mol (1927.3533 without restraints) Performing minimization step: 2904. Total energy = 1928.0048 kcal/mol (1927.1850 without restraints) Performing minimization step: 2905. Total energy = 1927.8372 kcal/mol (1927.0176 without restraints) Performing minimization step: 2906. Total energy = 1927.6696 kcal/mol (1926.8500 without restraints) Performing minimization step: 2907. Total energy = 1927.5023 kcal/mol (1926.6827 without restraints) Performing minimization step: 2908. Total energy = 1927.3348 kcal/mol (1926.5152 without restraints) Performing minimization step: 2909. Total energy = 1927.1676 kcal/mol (1926.3480 without restraints) Performing minimization step: 2910. Total energy = 1927.0008 kcal/mol (1926.1812 without restraints) Performing minimization step: 2911. Total energy = 1926.8338 kcal/mol (1926.0143 without restraints) Performing minimization step: 2912. Total energy = 1926.6673 kcal/mol (1925.8478 without restraints) Performing minimization step: 2913. Total energy = 1926.5012 kcal/mol (1925.6816 without restraints) Performing minimization step: 2914. Total energy = 1926.3347 kcal/mol (1925.5152 without restraints) Performing minimization step: 2915. Total energy = 1926.1684 kcal/mol (1925.3489 without restraints) Performing minimization step: 2916. Total energy = 1926.0023 kcal/mol (1925.1828 without restraints) Performing minimization step: 2917. Total energy = 1925.8364 kcal/mol (1925.0170 without restraints) Performing minimization step: 2918. Total energy = 1925.6710 kcal/mol (1924.8516 without restraints) Performing minimization step: 2919. Total energy = 1925.5053 kcal/mol (1924.6858 without restraints) Performing minimization step: 2920. Total energy = 1925.3396 kcal/mol (1924.5202 without restraints) Performing minimization step: 2921. Total energy = 1925.1741 kcal/mol (1924.3546 without restraints) Performing minimization step: 2922. Total energy = 1925.0085 kcal/mol (1924.1890 without restraints) Performing minimization step: 2923. Total energy = 1924.8436 kcal/mol (1924.0243 without restraints) Performing minimization step: 2924. Total energy = 1924.6786 kcal/mol (1923.8593 without restraints) Performing minimization step: 2925. Total energy = 1924.5137 kcal/mol (1923.6944 without restraints) Performing minimization step: 2926. Total energy = 1924.3485 kcal/mol (1923.5292 without restraints) Performing minimization step: 2927. Total energy = 1924.1841 kcal/mol (1923.3647 without restraints) Performing minimization step: 2928. Total energy = 1924.0197 kcal/mol (1923.2004 without restraints) Performing minimization step: 2929. Total energy = 1923.8553 kcal/mol (1923.0359 without restraints) Performing minimization step: 2930. Total energy = 1923.6911 kcal/mol (1922.8718 without restraints) Performing minimization step: 2931. Total energy = 1923.5271 kcal/mol (1922.7078 without restraints) Performing minimization step: 2932. Total energy = 1923.3634 kcal/mol (1922.5441 without restraints) Performing minimization step: 2933. Total energy = 1923.1996 kcal/mol (1922.3803 without restraints) Performing minimization step: 2934. Total energy = 1923.0362 kcal/mol (1922.2169 without restraints) Performing minimization step: 2935. Total energy = 1922.8727 kcal/mol (1922.0534 without restraints) Performing minimization step: 2936. Total energy = 1922.7091 kcal/mol (1921.8899 without restraints) Performing minimization step: 2937. Total energy = 1922.5459 kcal/mol (1921.7267 without restraints) Performing minimization step: 2938. Total energy = 1922.3830 kcal/mol (1921.5638 without restraints) Performing minimization step: 2939. Total energy = 1922.2202 kcal/mol (1921.4009 without restraints) Performing minimization step: 2940. Total energy = 1922.0574 kcal/mol (1921.2382 without restraints) Performing minimization step: 2941. Total energy = 1921.8948 kcal/mol (1921.0757 without restraints) Performing minimization step: 2942. Total energy = 1921.7324 kcal/mol (1920.9132 without restraints) Performing minimization step: 2943. Total energy = 1921.5702 kcal/mol (1920.7511 without restraints) Performing minimization step: 2944. Total energy = 1921.4081 kcal/mol (1920.5889 without restraints) Performing minimization step: 2945. Total energy = 1921.2460 kcal/mol (1920.4268 without restraints) Performing minimization step: 2946. Total energy = 1921.0843 kcal/mol (1920.2652 without restraints) Performing minimization step: 2947. Total energy = 1920.9226 kcal/mol (1920.1034 without restraints) Performing minimization step: 2948. Total energy = 1920.7606 kcal/mol (1919.9414 without restraints) Performing minimization step: 2949. Total energy = 1920.5990 kcal/mol (1919.7799 without restraints) Performing minimization step: 2950. Total energy = 1920.4376 kcal/mol (1919.6184 without restraints) Performing minimization step: 2951. Total energy = 1920.2767 kcal/mol (1919.4575 without restraints) Performing minimization step: 2952. Total energy = 1920.1156 kcal/mol (1919.2964 without restraints) Performing minimization step: 2953. Total energy = 1919.9548 kcal/mol (1919.1356 without restraints) Performing minimization step: 2954. Total energy = 1919.7939 kcal/mol (1918.9747 without restraints) Performing minimization step: 2955. Total energy = 1919.6332 kcal/mol (1918.8140 without restraints) Performing minimization step: 2956. Total energy = 1919.4724 kcal/mol (1918.6532 without restraints) Performing minimization step: 2957. Total energy = 1919.3117 kcal/mol (1918.4925 without restraints) Performing minimization step: 2958. Total energy = 1919.1515 kcal/mol (1918.3324 without restraints) Performing minimization step: 2959. Total energy = 1918.9914 kcal/mol (1918.1721 without restraints) Performing minimization step: 2960. Total energy = 1918.8315 kcal/mol (1918.0124 without restraints) Performing minimization step: 2961. Total energy = 1918.6716 kcal/mol (1917.8524 without restraints) Performing minimization step: 2962. Total energy = 1918.5115 kcal/mol (1917.6924 without restraints) Performing minimization step: 2963. Total energy = 1918.3516 kcal/mol (1917.5325 without restraints) Performing minimization step: 2964. Total energy = 1918.1919 kcal/mol (1917.3727 without restraints) Performing minimization step: 2965. Total energy = 1918.0330 kcal/mol (1917.2138 without restraints) Performing minimization step: 2966. Total energy = 1917.8740 kcal/mol (1917.0548 without restraints) Performing minimization step: 2967. Total energy = 1917.7149 kcal/mol (1916.8957 without restraints) Performing minimization step: 2968. Total energy = 1917.5559 kcal/mol (1916.7367 without restraints) Performing minimization step: 2969. Total energy = 1917.3972 kcal/mol (1916.5780 without restraints) Performing minimization step: 2970. Total energy = 1917.2384 kcal/mol (1916.4193 without restraints) Performing minimization step: 2971. Total energy = 1917.0799 kcal/mol (1916.2607 without restraints) Performing minimization step: 2972. Total energy = 1916.9214 kcal/mol (1916.1022 without restraints) Performing minimization step: 2973. Total energy = 1916.7632 kcal/mol (1915.9440 without restraints) Performing minimization step: 2974. Total energy = 1916.6052 kcal/mol (1915.7860 without restraints) Performing minimization step: 2975. Total energy = 1916.4479 kcal/mol (1915.6287 without restraints) Performing minimization step: 2976. Total energy = 1916.2900 kcal/mol (1915.4708 without restraints) Performing minimization step: 2977. Total energy = 1916.1323 kcal/mol (1915.3130 without restraints) Performing minimization step: 2978. Total energy = 1915.9746 kcal/mol (1915.1554 without restraints) Performing minimization step: 2979. Total energy = 1915.8172 kcal/mol (1914.9979 without restraints) Performing minimization step: 2980. Total energy = 1915.6598 kcal/mol (1914.8407 without restraints) Performing minimization step: 2981. Total energy = 1915.5028 kcal/mol (1914.6837 without restraints) Performing minimization step: 2982. Total energy = 1915.3455 kcal/mol (1914.5263 without restraints) Performing minimization step: 2983. Total energy = 1915.1886 kcal/mol (1914.3693 without restraints) Performing minimization step: 2984. Total energy = 1915.0322 kcal/mol (1914.2129 without restraints) Performing minimization step: 2985. Total energy = 1914.8755 kcal/mol (1914.0562 without restraints) Performing minimization step: 2986. Total energy = 1914.7193 kcal/mol (1913.9002 without restraints) Performing minimization step: 2987. Total energy = 1914.5628 kcal/mol (1913.7437 without restraints) Performing minimization step: 2988. Total energy = 1914.4067 kcal/mol (1913.5874 without restraints) Performing minimization step: 2989. Total energy = 1914.2505 kcal/mol (1913.4312 without restraints) Performing minimization step: 2990. Total energy = 1914.0948 kcal/mol (1913.2755 without restraints) Performing minimization step: 2991. Total energy = 1913.9393 kcal/mol (1913.1200 without restraints) Performing minimization step: 2992. Total energy = 1913.7835 kcal/mol (1912.9642 without restraints) Performing minimization step: 2993. Total energy = 1913.6279 kcal/mol (1912.8085 without restraints) Performing minimization step: 2994. Total energy = 1913.4724 kcal/mol (1912.6530 without restraints) Performing minimization step: 2995. Total energy = 1913.3170 kcal/mol (1912.4976 without restraints) Performing minimization step: 2996. Total energy = 1913.1616 kcal/mol (1912.3422 without restraints) Performing minimization step: 2997. Total energy = 1913.0064 kcal/mol (1912.1870 without restraints) Performing minimization step: 2998. Total energy = 1912.8514 kcal/mol (1912.0320 without restraints) Performing minimization step: 2999. Total energy = 1912.6967 kcal/mol (1911.8773 without restraints) Performing minimization step: 3000. Total energy = 1912.5420 kcal/mol (1911.7225 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 1912.3876 kcal/mol (1911.5681 without restraints) Performing minimization step: 3002. Total energy = 1912.2334 kcal/mol (1911.4139 without restraints) Performing minimization step: 3003. Total energy = 1912.0792 kcal/mol (1911.2597 without restraints) Performing minimization step: 3004. Total energy = 1911.9253 kcal/mol (1911.1058 without restraints) Performing minimization step: 3005. Total energy = 1911.7714 kcal/mol (1910.9519 without restraints) Performing minimization step: 3006. Total energy = 1911.6176 kcal/mol (1910.7981 without restraints) Performing minimization step: 3007. Total energy = 1911.4638 kcal/mol (1910.6442 without restraints) Performing minimization step: 3008. Total energy = 1911.3102 kcal/mol (1910.4907 without restraints) Performing minimization step: 3009. Total energy = 1911.1568 kcal/mol (1910.3372 without restraints) Performing minimization step: 3010. Total energy = 1911.0034 kcal/mol (1910.1838 without restraints) Performing minimization step: 3011. Total energy = 1910.8501 kcal/mol (1910.0304 without restraints) Performing minimization step: 3012. Total energy = 1910.6969 kcal/mol (1909.8773 without restraints) Performing minimization step: 3013. Total energy = 1910.5440 kcal/mol (1909.7244 without restraints) Performing minimization step: 3014. Total energy = 1910.3918 kcal/mol (1909.5722 without restraints) Performing minimization step: 3015. Total energy = 1910.2388 kcal/mol (1909.4191 without restraints) Performing minimization step: 3016. Total energy = 1910.0861 kcal/mol (1909.2664 without restraints) Performing minimization step: 3017. Total energy = 1909.9333 kcal/mol (1909.1136 without restraints) Performing minimization step: 3018. Total energy = 1909.7809 kcal/mol (1908.9612 without restraints) Performing minimization step: 3019. Total energy = 1909.6284 kcal/mol (1908.8087 without restraints) Performing minimization step: 3020. Total energy = 1909.4764 kcal/mol (1908.6567 without restraints) Performing minimization step: 3021. Total energy = 1909.3243 kcal/mol (1908.5046 without restraints) Performing minimization step: 3022. Total energy = 1909.1726 kcal/mol (1908.3526 without restraints) Performing minimization step: 3023. Total energy = 1909.0206 kcal/mol (1908.2008 without restraints) Performing minimization step: 3024. Total energy = 1908.8688 kcal/mol (1908.0489 without restraints) Performing minimization step: 3025. Total energy = 1908.7176 kcal/mol (1907.8979 without restraints) Performing minimization step: 3026. Total energy = 1908.5663 kcal/mol (1907.7465 without restraints) Performing minimization step: 3027. Total energy = 1908.4154 kcal/mol (1907.5956 without restraints) Performing minimization step: 3028. Total energy = 1908.2643 kcal/mol (1907.4443 without restraints) Performing minimization step: 3029. Total energy = 1908.1135 kcal/mol (1907.2935 without restraints) Performing minimization step: 3030. Total energy = 1907.9629 kcal/mol (1907.1430 without restraints) Performing minimization step: 3031. Total energy = 1907.8121 kcal/mol (1906.9921 without restraints) Performing minimization step: 3032. Total energy = 1907.6615 kcal/mol (1906.8414 without restraints) Performing minimization step: 3033. Total energy = 1907.5109 kcal/mol (1906.6909 without restraints) Performing minimization step: 3034. Total energy = 1907.3606 kcal/mol (1906.5404 without restraints) Performing minimization step: 3035. Total energy = 1907.2100 kcal/mol (1906.3899 without restraints) Performing minimization step: 3036. Total energy = 1907.0598 kcal/mol (1906.2397 without restraints) Performing minimization step: 3037. Total energy = 1906.9100 kcal/mol (1906.0899 without restraints) Performing minimization step: 3038. Total energy = 1906.7604 kcal/mol (1905.9403 without restraints) Performing minimization step: 3039. Total energy = 1906.6103 kcal/mol (1905.7901 without restraints) Performing minimization step: 3040. Total energy = 1906.4607 kcal/mol (1905.6405 without restraints) Performing minimization step: 3041. Total energy = 1906.3110 kcal/mol (1905.4907 without restraints) Performing minimization step: 3042. Total energy = 1906.1617 kcal/mol (1905.3414 without restraints) Performing minimization step: 3043. Total energy = 1906.0124 kcal/mol (1905.1921 without restraints) Performing minimization step: 3044. Total energy = 1905.8636 kcal/mol (1905.0434 without restraints) Performing minimization step: 3045. Total energy = 1905.7149 kcal/mol (1904.8945 without restraints) Performing minimization step: 3046. Total energy = 1905.5659 kcal/mol (1904.7455 without restraints) Performing minimization step: 3047. Total energy = 1905.4177 kcal/mol (1904.5974 without restraints) Performing minimization step: 3048. Total energy = 1905.2692 kcal/mol (1904.4488 without restraints) Performing minimization step: 3049. Total energy = 1905.1208 kcal/mol (1904.3004 without restraints) Performing minimization step: 3050. Total energy = 1904.9727 kcal/mol (1904.1522 without restraints) Performing minimization step: 3051. Total energy = 1904.8244 kcal/mol (1904.0039 without restraints) Performing minimization step: 3052. Total energy = 1904.6765 kcal/mol (1903.8559 without restraints) Performing minimization step: 3053. Total energy = 1904.5285 kcal/mol (1903.7079 without restraints) Performing minimization step: 3054. Total energy = 1904.3810 kcal/mol (1903.5603 without restraints) Performing minimization step: 3055. Total energy = 1904.2330 kcal/mol (1903.4124 without restraints) Performing minimization step: 3056. Total energy = 1904.0858 kcal/mol (1903.2652 without restraints) Performing minimization step: 3057. Total energy = 1903.9383 kcal/mol (1903.1176 without restraints) Performing minimization step: 3058. Total energy = 1903.7912 kcal/mol (1902.9705 without restraints) Performing minimization step: 3059. Total energy = 1903.6441 kcal/mol (1902.8235 without restraints) Performing minimization step: 3060. Total energy = 1903.4972 kcal/mol (1902.6764 without restraints) Performing minimization step: 3061. Total energy = 1903.3501 kcal/mol (1902.5293 without restraints) Performing minimization step: 3062. Total energy = 1903.2034 kcal/mol (1902.3825 without restraints) Performing minimization step: 3063. Total energy = 1903.0571 kcal/mol (1902.2362 without restraints) Performing minimization step: 3064. Total energy = 1902.9108 kcal/mol (1902.0901 without restraints) Performing minimization step: 3065. Total energy = 1902.7649 kcal/mol (1901.9439 without restraints) Performing minimization step: 3066. Total energy = 1902.6183 kcal/mol (1901.7972 without restraints) Performing minimization step: 3067. Total energy = 1902.4725 kcal/mol (1901.6514 without restraints) Performing minimization step: 3068. Total energy = 1902.3260 kcal/mol (1901.5050 without restraints) Performing minimization step: 3069. Total energy = 1902.1795 kcal/mol (1901.3584 without restraints) Performing minimization step: 3070. Total energy = 1902.0333 kcal/mol (1901.2121 without restraints) Performing minimization step: 3071. Total energy = 1901.8874 kcal/mol (1901.0662 without restraints) Performing minimization step: 3072. Total energy = 1901.7420 kcal/mol (1900.9208 without restraints) Performing minimization step: 3073. Total energy = 1901.5964 kcal/mol (1900.7752 without restraints) Performing minimization step: 3074. Total energy = 1901.4511 kcal/mol (1900.6298 without restraints) Performing minimization step: 3075. Total energy = 1901.3057 kcal/mol (1900.4844 without restraints) Performing minimization step: 3076. Total energy = 1901.1604 kcal/mol (1900.3391 without restraints) Performing minimization step: 3077. Total energy = 1901.0153 kcal/mol (1900.1939 without restraints) Performing minimization step: 3078. Total energy = 1900.8709 kcal/mol (1900.0496 without restraints) Performing minimization step: 3079. Total energy = 1900.7261 kcal/mol (1899.9047 without restraints) Performing minimization step: 3080. Total energy = 1900.5813 kcal/mol (1899.7598 without restraints) Performing minimization step: 3081. Total energy = 1900.4367 kcal/mol (1899.6152 without restraints) Performing minimization step: 3082. Total energy = 1900.2920 kcal/mol (1899.4705 without restraints) Performing minimization step: 3083. Total energy = 1900.1479 kcal/mol (1899.3263 without restraints) Performing minimization step: 3084. Total energy = 1900.0036 kcal/mol (1899.1820 without restraints) Performing minimization step: 3085. Total energy = 1899.8597 kcal/mol (1899.0380 without restraints) Performing minimization step: 3086. Total energy = 1899.7157 kcal/mol (1898.8939 without restraints) Performing minimization step: 3087. Total energy = 1899.5718 kcal/mol (1898.7500 without restraints) Performing minimization step: 3088. Total energy = 1899.4279 kcal/mol (1898.6061 without restraints) Performing minimization step: 3089. Total energy = 1899.2841 kcal/mol (1898.4623 without restraints) Performing minimization step: 3090. Total energy = 1899.1412 kcal/mol (1898.3196 without restraints) Performing minimization step: 3091. Total energy = 1898.9979 kcal/mol (1898.1760 without restraints) Performing minimization step: 3092. Total energy = 1898.8543 kcal/mol (1898.0324 without restraints) Performing minimization step: 3093. Total energy = 1898.7111 kcal/mol (1897.8891 without restraints) Performing minimization step: 3094. Total energy = 1898.5680 kcal/mol (1897.7459 without restraints) Performing minimization step: 3095. Total energy = 1898.4249 kcal/mol (1897.6028 without restraints) Performing minimization step: 3096. Total energy = 1898.2820 kcal/mol (1897.4599 without restraints) Performing minimization step: 3097. Total energy = 1898.1394 kcal/mol (1897.3173 without restraints) Performing minimization step: 3098. Total energy = 1897.9968 kcal/mol (1897.1746 without restraints) Performing minimization step: 3099. Total energy = 1897.8545 kcal/mol (1897.0323 without restraints) Performing minimization step: 3100. Total energy = 1897.7123 kcal/mol (1896.8901 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 1897.5700 kcal/mol (1896.7477 without restraints) Performing minimization step: 3102. Total energy = 1897.4278 kcal/mol (1896.6054 without restraints) Performing minimization step: 3103. Total energy = 1897.2859 kcal/mol (1896.4635 without restraints) Performing minimization step: 3104. Total energy = 1897.1439 kcal/mol (1896.3215 without restraints) Performing minimization step: 3105. Total energy = 1897.0020 kcal/mol (1896.1795 without restraints) Performing minimization step: 3106. Total energy = 1896.8601 kcal/mol (1896.0376 without restraints) Performing minimization step: 3107. Total energy = 1896.7185 kcal/mol (1895.8959 without restraints) Performing minimization step: 3108. Total energy = 1896.5770 kcal/mol (1895.7544 without restraints) Performing minimization step: 3109. Total energy = 1896.4353 kcal/mol (1895.6125 without restraints) Performing minimization step: 3110. Total energy = 1896.2938 kcal/mol (1895.4711 without restraints) Performing minimization step: 3111. Total energy = 1896.1522 kcal/mol (1895.3294 without restraints) Performing minimization step: 3112. Total energy = 1896.0114 kcal/mol (1895.1886 without restraints) Performing minimization step: 3113. Total energy = 1895.8711 kcal/mol (1895.0482 without restraints) Performing minimization step: 3114. Total energy = 1895.7303 kcal/mol (1894.9074 without restraints) Performing minimization step: 3115. Total energy = 1895.5900 kcal/mol (1894.7670 without restraints) Performing minimization step: 3116. Total energy = 1895.4494 kcal/mol (1894.6264 without restraints) Performing minimization step: 3117. Total energy = 1895.3094 kcal/mol (1894.4863 without restraints) Performing minimization step: 3118. Total energy = 1895.1694 kcal/mol (1894.3463 without restraints) Performing minimization step: 3119. Total energy = 1895.0293 kcal/mol (1894.2063 without restraints) Performing minimization step: 3120. Total energy = 1894.8893 kcal/mol (1894.0661 without restraints) Performing minimization step: 3121. Total energy = 1894.7498 kcal/mol (1893.9265 without restraints) Performing minimization step: 3122. Total energy = 1894.6098 kcal/mol (1893.7865 without restraints) Performing minimization step: 3123. Total energy = 1894.4700 kcal/mol (1893.6467 without restraints) Performing minimization step: 3124. Total energy = 1894.3306 kcal/mol (1893.5073 without restraints) Performing minimization step: 3125. Total energy = 1894.1911 kcal/mol (1893.3677 without restraints) Performing minimization step: 3126. Total energy = 1894.0517 kcal/mol (1893.2282 without restraints) Performing minimization step: 3127. Total energy = 1893.9124 kcal/mol (1893.0887 without restraints) Performing minimization step: 3128. Total energy = 1893.7731 kcal/mol (1892.9495 without restraints) Performing minimization step: 3129. Total energy = 1893.6340 kcal/mol (1892.8103 without restraints) Performing minimization step: 3130. Total energy = 1893.4951 kcal/mol (1892.6715 without restraints) Performing minimization step: 3131. Total energy = 1893.3563 kcal/mol (1892.5325 without restraints) Performing minimization step: 3132. Total energy = 1893.2175 kcal/mol (1892.3937 without restraints) Performing minimization step: 3133. Total energy = 1893.0789 kcal/mol (1892.2550 without restraints) Performing minimization step: 3134. Total energy = 1892.9405 kcal/mol (1892.1166 without restraints) Performing minimization step: 3135. Total energy = 1892.8021 kcal/mol (1891.9782 without restraints) Performing minimization step: 3136. Total energy = 1892.6638 kcal/mol (1891.8398 without restraints) Performing minimization step: 3137. Total energy = 1892.5252 kcal/mol (1891.7011 without restraints) Performing minimization step: 3138. Total energy = 1892.3871 kcal/mol (1891.5630 without restraints) Performing minimization step: 3139. Total energy = 1892.2492 kcal/mol (1891.4250 without restraints) Performing minimization step: 3140. Total energy = 1892.1113 kcal/mol (1891.2871 without restraints) Performing minimization step: 3141. Total energy = 1891.9736 kcal/mol (1891.1493 without restraints) Performing minimization step: 3142. Total energy = 1891.8357 kcal/mol (1891.0114 without restraints) Performing minimization step: 3143. Total energy = 1891.6983 kcal/mol (1890.8739 without restraints) Performing minimization step: 3144. Total energy = 1891.5611 kcal/mol (1890.7367 without restraints) Performing minimization step: 3145. Total energy = 1891.4235 kcal/mol (1890.5990 without restraints) Performing minimization step: 3146. Total energy = 1891.2863 kcal/mol (1890.4618 without restraints) Performing minimization step: 3147. Total energy = 1891.1493 kcal/mol (1890.3247 without restraints) Performing minimization step: 3148. Total energy = 1891.0122 kcal/mol (1890.1875 without restraints) Performing minimization step: 3149. Total energy = 1890.8753 kcal/mol (1890.0506 without restraints) Performing minimization step: 3150. Total energy = 1890.7389 kcal/mol (1889.9142 without restraints) Performing minimization step: 3151. Total energy = 1890.6023 kcal/mol (1889.7775 without restraints) Performing minimization step: 3152. Total energy = 1890.4658 kcal/mol (1889.6410 without restraints) Performing minimization step: 3153. Total energy = 1890.3294 kcal/mol (1889.5045 without restraints) Performing minimization step: 3154. Total energy = 1890.1933 kcal/mol (1889.3683 without restraints) Performing minimization step: 3155. Total energy = 1890.0572 kcal/mol (1889.2321 without restraints) Performing minimization step: 3156. Total energy = 1889.9215 kcal/mol (1889.0965 without restraints) Performing minimization step: 3157. Total energy = 1889.7859 kcal/mol (1888.9607 without restraints) Performing minimization step: 3158. Total energy = 1889.6500 kcal/mol (1888.8249 without restraints) Performing minimization step: 3159. Total energy = 1889.5148 kcal/mol (1888.6895 without restraints) Performing minimization step: 3160. Total energy = 1889.3792 kcal/mol (1888.5539 without restraints) Performing minimization step: 3161. Total energy = 1889.2437 kcal/mol (1888.4183 without restraints) Performing minimization step: 3162. Total energy = 1889.1085 kcal/mol (1888.2832 without restraints) Performing minimization step: 3163. Total energy = 1888.9733 kcal/mol (1888.1479 without restraints) Performing minimization step: 3164. Total energy = 1888.8384 kcal/mol (1888.0128 without restraints) Performing minimization step: 3165. Total energy = 1888.7032 kcal/mol (1887.8776 without restraints) Performing minimization step: 3166. Total energy = 1888.5682 kcal/mol (1887.7426 without restraints) Performing minimization step: 3167. Total energy = 1888.4334 kcal/mol (1887.6077 without restraints) Performing minimization step: 3168. Total energy = 1888.2991 kcal/mol (1887.4733 without restraints) Performing minimization step: 3169. Total energy = 1888.1646 kcal/mol (1887.3387 without restraints) Performing minimization step: 3170. Total energy = 1888.0300 kcal/mol (1887.2042 without restraints) Performing minimization step: 3171. Total energy = 1887.8957 kcal/mol (1887.0697 without restraints) Performing minimization step: 3172. Total energy = 1887.7616 kcal/mol (1886.9356 without restraints) Performing minimization step: 3173. Total energy = 1887.6277 kcal/mol (1886.8016 without restraints) Performing minimization step: 3174. Total energy = 1887.4935 kcal/mol (1886.6674 without restraints) Performing minimization step: 3175. Total energy = 1887.3596 kcal/mol (1886.5335 without restraints) Performing minimization step: 3176. Total energy = 1887.2257 kcal/mol (1886.3994 without restraints) Performing minimization step: 3177. Total energy = 1887.0919 kcal/mol (1886.2656 without restraints) Performing minimization step: 3178. Total energy = 1886.9583 kcal/mol (1886.1319 without restraints) Performing minimization step: 3179. Total energy = 1886.8250 kcal/mol (1885.9986 without restraints) Performing minimization step: 3180. Total energy = 1886.6916 kcal/mol (1885.8651 without restraints) Performing minimization step: 3181. Total energy = 1886.5581 kcal/mol (1885.7315 without restraints) Performing minimization step: 3182. Total energy = 1886.4246 kcal/mol (1885.5980 without restraints) Performing minimization step: 3183. Total energy = 1886.2918 kcal/mol (1885.4651 without restraints) Performing minimization step: 3184. Total energy = 1886.1590 kcal/mol (1885.3322 without restraints) Performing minimization step: 3185. Total energy = 1886.0260 kcal/mol (1885.1992 without restraints) Performing minimization step: 3186. Total energy = 1885.8933 kcal/mol (1885.0664 without restraints) Performing minimization step: 3187. Total energy = 1885.7604 kcal/mol (1884.9335 without restraints) Performing minimization step: 3188. Total energy = 1885.6279 kcal/mol (1884.8009 without restraints) Performing minimization step: 3189. Total energy = 1885.4957 kcal/mol (1884.6686 without restraints) Performing minimization step: 3190. Total energy = 1885.3633 kcal/mol (1884.5361 without restraints) Performing minimization step: 3191. Total energy = 1885.2311 kcal/mol (1884.4040 without restraints) Performing minimization step: 3192. Total energy = 1885.0993 kcal/mol (1884.2720 without restraints) Performing minimization step: 3193. Total energy = 1884.9673 kcal/mol (1884.1399 without restraints) Performing minimization step: 3194. Total energy = 1884.8353 kcal/mol (1884.0079 without restraints) Performing minimization step: 3195. Total energy = 1884.7035 kcal/mol (1883.8760 without restraints) Performing minimization step: 3196. Total energy = 1884.5719 kcal/mol (1883.7444 without restraints) Performing minimization step: 3197. Total energy = 1884.4405 kcal/mol (1883.6129 without restraints) Performing minimization step: 3198. Total energy = 1884.3092 kcal/mol (1883.4815 without restraints) Performing minimization step: 3199. Total energy = 1884.1777 kcal/mol (1883.3500 without restraints) Performing minimization step: 3200. Total energy = 1884.0464 kcal/mol (1883.2186 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 1883.9152 kcal/mol (1883.0874 without restraints) Performing minimization step: 3202. Total energy = 1883.7843 kcal/mol (1882.9564 without restraints) Performing minimization step: 3203. Total energy = 1883.6533 kcal/mol (1882.8253 without restraints) Performing minimization step: 3204. Total energy = 1883.5224 kcal/mol (1882.6944 without restraints) Performing minimization step: 3205. Total energy = 1883.3916 kcal/mol (1882.5635 without restraints) Performing minimization step: 3206. Total energy = 1883.2609 kcal/mol (1882.4327 without restraints) Performing minimization step: 3207. Total energy = 1883.1304 kcal/mol (1882.3021 without restraints) Performing minimization step: 3208. Total energy = 1882.9999 kcal/mol (1882.1715 without restraints) Performing minimization step: 3209. Total energy = 1882.8698 kcal/mol (1882.0415 without restraints) Performing minimization step: 3210. Total energy = 1882.7396 kcal/mol (1881.9112 without restraints) Performing minimization step: 3211. Total energy = 1882.6095 kcal/mol (1881.7809 without restraints) Performing minimization step: 3212. Total energy = 1882.4794 kcal/mol (1881.6508 without restraints) Performing minimization step: 3213. Total energy = 1882.3494 kcal/mol (1881.5208 without restraints) Performing minimization step: 3214. Total energy = 1882.2198 kcal/mol (1881.3910 without restraints) Performing minimization step: 3215. Total energy = 1882.0898 kcal/mol (1881.2610 without restraints) Performing minimization step: 3216. Total energy = 1881.9602 kcal/mol (1881.1313 without restraints) Performing minimization step: 3217. Total energy = 1881.8306 kcal/mol (1881.0019 without restraints) Performing minimization step: 3218. Total energy = 1881.7014 kcal/mol (1880.8724 without restraints) Performing minimization step: 3219. Total energy = 1881.5721 kcal/mol (1880.7430 without restraints) Performing minimization step: 3220. Total energy = 1881.4428 kcal/mol (1880.6137 without restraints) Performing minimization step: 3221. Total energy = 1881.3139 kcal/mol (1880.4847 without restraints) Performing minimization step: 3222. Total energy = 1881.1849 kcal/mol (1880.3557 without restraints) Performing minimization step: 3223. Total energy = 1881.0560 kcal/mol (1880.2267 without restraints) Performing minimization step: 3224. Total energy = 1880.9275 kcal/mol (1880.0980 without restraints) Performing minimization step: 3225. Total energy = 1880.7988 kcal/mol (1879.9692 without restraints) Performing minimization step: 3226. Total energy = 1880.6704 kcal/mol (1879.8408 without restraints) Performing minimization step: 3227. Total energy = 1880.5417 kcal/mol (1879.7121 without restraints) Performing minimization step: 3228. Total energy = 1880.4132 kcal/mol (1879.5835 without restraints) Performing minimization step: 3229. Total energy = 1880.2851 kcal/mol (1879.4553 without restraints) Performing minimization step: 3230. Total energy = 1880.1570 kcal/mol (1879.3271 without restraints) Performing minimization step: 3231. Total energy = 1880.0289 kcal/mol (1879.1990 without restraints) Performing minimization step: 3232. Total energy = 1879.9009 kcal/mol (1879.0707 without restraints) Performing minimization step: 3233. Total energy = 1879.7729 kcal/mol (1878.9428 without restraints) Performing minimization step: 3234. Total energy = 1879.6454 kcal/mol (1878.8152 without restraints) Performing minimization step: 3235. Total energy = 1879.5180 kcal/mol (1878.6879 without restraints) Performing minimization step: 3236. Total energy = 1879.3905 kcal/mol (1878.5602 without restraints) Performing minimization step: 3237. Total energy = 1879.2630 kcal/mol (1878.4326 without restraints) Performing minimization step: 3238. Total energy = 1879.1360 kcal/mol (1878.3056 without restraints) Performing minimization step: 3239. Total energy = 1879.0088 kcal/mol (1878.1783 without restraints) Performing minimization step: 3240. Total energy = 1878.8816 kcal/mol (1878.0510 without restraints) Performing minimization step: 3241. Total energy = 1878.7546 kcal/mol (1877.9239 without restraints) Performing minimization step: 3242. Total energy = 1878.6277 kcal/mol (1877.7970 without restraints) Performing minimization step: 3243. Total energy = 1878.5006 kcal/mol (1877.6697 without restraints) Performing minimization step: 3244. Total energy = 1878.3742 kcal/mol (1877.5433 without restraints) Performing minimization step: 3245. Total energy = 1878.2475 kcal/mol (1877.4165 without restraints) Performing minimization step: 3246. Total energy = 1878.1210 kcal/mol (1877.2899 without restraints) Performing minimization step: 3247. Total energy = 1877.9947 kcal/mol (1877.1635 without restraints) Performing minimization step: 3248. Total energy = 1877.8687 kcal/mol (1877.0375 without restraints) Performing minimization step: 3249. Total energy = 1877.7425 kcal/mol (1876.9112 without restraints) Performing minimization step: 3250. Total energy = 1877.6163 kcal/mol (1876.7849 without restraints) Performing minimization step: 3251. Total energy = 1877.4900 kcal/mol (1876.6586 without restraints) Performing minimization step: 3252. Total energy = 1877.3642 kcal/mol (1876.5327 without restraints) Performing minimization step: 3253. Total energy = 1877.2385 kcal/mol (1876.4069 without restraints) Performing minimization step: 3254. Total energy = 1877.1130 kcal/mol (1876.2813 without restraints) Performing minimization step: 3255. Total energy = 1876.9873 kcal/mol (1876.1556 without restraints) Performing minimization step: 3256. Total energy = 1876.8617 kcal/mol (1876.0299 without restraints) Performing minimization step: 3257. Total energy = 1876.7364 kcal/mol (1875.9046 without restraints) Performing minimization step: 3258. Total energy = 1876.6109 kcal/mol (1875.7789 without restraints) Performing minimization step: 3259. Total energy = 1876.4856 kcal/mol (1875.6536 without restraints) Performing minimization step: 3260. Total energy = 1876.3602 kcal/mol (1875.5281 without restraints) Performing minimization step: 3261. Total energy = 1876.2353 kcal/mol (1875.4031 without restraints) Performing minimization step: 3262. Total energy = 1876.1108 kcal/mol (1875.2785 without restraints) Performing minimization step: 3263. Total energy = 1875.9862 kcal/mol (1875.1538 without restraints) Performing minimization step: 3264. Total energy = 1875.8616 kcal/mol (1875.0291 without restraints) Performing minimization step: 3265. Total energy = 1875.7369 kcal/mol (1874.9044 without restraints) Performing minimization step: 3266. Total energy = 1875.6124 kcal/mol (1874.7797 without restraints) Performing minimization step: 3267. Total energy = 1875.4879 kcal/mol (1874.6553 without restraints) Performing minimization step: 3268. Total energy = 1875.3640 kcal/mol (1874.5315 without restraints) Performing minimization step: 3269. Total energy = 1875.2400 kcal/mol (1874.4071 without restraints) Performing minimization step: 3270. Total energy = 1875.1154 kcal/mol (1874.2826 without restraints) Performing minimization step: 3271. Total energy = 1874.9917 kcal/mol (1874.1587 without restraints) Performing minimization step: 3272. Total energy = 1874.8677 kcal/mol (1874.0347 without restraints) Performing minimization step: 3273. Total energy = 1874.7439 kcal/mol (1873.9107 without restraints) Performing minimization step: 3274. Total energy = 1874.6202 kcal/mol (1873.7870 without restraints) Performing minimization step: 3275. Total energy = 1874.4966 kcal/mol (1873.6633 without restraints) Performing minimization step: 3276. Total energy = 1874.3731 kcal/mol (1873.5396 without restraints) Performing minimization step: 3277. Total energy = 1874.2497 kcal/mol (1873.4162 without restraints) Performing minimization step: 3278. Total energy = 1874.1264 kcal/mol (1873.2928 without restraints) Performing minimization step: 3279. Total energy = 1874.0030 kcal/mol (1873.1694 without restraints) Performing minimization step: 3280. Total energy = 1873.8800 kcal/mol (1873.0463 without restraints) Performing minimization step: 3281. Total energy = 1873.7573 kcal/mol (1872.9235 without restraints) Performing minimization step: 3282. Total energy = 1873.6345 kcal/mol (1872.8005 without restraints) Performing minimization step: 3283. Total energy = 1873.5118 kcal/mol (1872.6779 without restraints) Performing minimization step: 3284. Total energy = 1873.3891 kcal/mol (1872.5550 without restraints) Performing minimization step: 3285. Total energy = 1873.2665 kcal/mol (1872.4323 without restraints) Performing minimization step: 3286. Total energy = 1873.1440 kcal/mol (1872.3099 without restraints) Performing minimization step: 3287. Total energy = 1873.0218 kcal/mol (1872.1874 without restraints) Performing minimization step: 3288. Total energy = 1872.8993 kcal/mol (1872.0649 without restraints) Performing minimization step: 3289. Total energy = 1872.7771 kcal/mol (1871.9427 without restraints) Performing minimization step: 3290. Total energy = 1872.6550 kcal/mol (1871.8204 without restraints) Performing minimization step: 3291. Total energy = 1872.5331 kcal/mol (1871.6984 without restraints) Performing minimization step: 3292. Total energy = 1872.4114 kcal/mol (1871.5767 without restraints) Performing minimization step: 3293. Total energy = 1872.2895 kcal/mol (1871.4547 without restraints) Performing minimization step: 3294. Total energy = 1872.1677 kcal/mol (1871.3328 without restraints) Performing minimization step: 3295. Total energy = 1872.0459 kcal/mol (1871.2109 without restraints) Performing minimization step: 3296. Total energy = 1871.9242 kcal/mol (1871.0891 without restraints) Performing minimization step: 3297. Total energy = 1871.8027 kcal/mol (1870.9675 without restraints) Performing minimization step: 3298. Total energy = 1871.6811 kcal/mol (1870.8457 without restraints) Performing minimization step: 3299. Total energy = 1871.5598 kcal/mol (1870.7245 without restraints) Performing minimization step: 3300. Total energy = 1871.4386 kcal/mol (1870.6031 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 1871.3176 kcal/mol (1870.4821 without restraints) Performing minimization step: 3302. Total energy = 1871.1966 kcal/mol (1870.3610 without restraints) Performing minimization step: 3303. Total energy = 1871.0756 kcal/mol (1870.2399 without restraints) Performing minimization step: 3304. Total energy = 1870.9547 kcal/mol (1870.1189 without restraints) Performing minimization step: 3305. Total energy = 1870.8337 kcal/mol (1869.9978 without restraints) Performing minimization step: 3306. Total energy = 1870.7134 kcal/mol (1869.8774 without restraints) Performing minimization step: 3307. Total energy = 1870.5928 kcal/mol (1869.7567 without restraints) Performing minimization step: 3308. Total energy = 1870.4725 kcal/mol (1869.6363 without restraints) Performing minimization step: 3309. Total energy = 1870.3520 kcal/mol (1869.5158 without restraints) Performing minimization step: 3310. Total energy = 1870.2315 kcal/mol (1869.3952 without restraints) Performing minimization step: 3311. Total energy = 1870.1116 kcal/mol (1869.2752 without restraints) Performing minimization step: 3312. Total energy = 1869.9914 kcal/mol (1869.1549 without restraints) Performing minimization step: 3313. Total energy = 1869.8715 kcal/mol (1869.0350 without restraints) Performing minimization step: 3314. Total energy = 1869.7516 kcal/mol (1868.9150 without restraints) Performing minimization step: 3315. Total energy = 1869.6318 kcal/mol (1868.7950 without restraints) Performing minimization step: 3316. Total energy = 1869.5122 kcal/mol (1868.6754 without restraints) Performing minimization step: 3317. Total energy = 1869.3928 kcal/mol (1868.5560 without restraints) Performing minimization step: 3318. Total energy = 1869.2734 kcal/mol (1868.4363 without restraints) Performing minimization step: 3319. Total energy = 1869.1541 kcal/mol (1868.3170 without restraints) Performing minimization step: 3320. Total energy = 1869.0352 kcal/mol (1868.1980 without restraints) Performing minimization step: 3321. Total energy = 1868.9159 kcal/mol (1868.0787 without restraints) Performing minimization step: 3322. Total energy = 1868.7966 kcal/mol (1867.9592 without restraints) Performing minimization step: 3323. Total energy = 1868.6774 kcal/mol (1867.8400 without restraints) Performing minimization step: 3324. Total energy = 1868.5586 kcal/mol (1867.7211 without restraints) Performing minimization step: 3325. Total energy = 1868.4397 kcal/mol (1867.6021 without restraints) Performing minimization step: 3326. Total energy = 1868.3206 kcal/mol (1867.4829 without restraints) Performing minimization step: 3327. Total energy = 1868.2019 kcal/mol (1867.3641 without restraints) Performing minimization step: 3328. Total energy = 1868.0835 kcal/mol (1867.2456 without restraints) Performing minimization step: 3329. Total energy = 1867.9652 kcal/mol (1867.1272 without restraints) Performing minimization step: 3330. Total energy = 1867.8467 kcal/mol (1867.0086 without restraints) Performing minimization step: 3331. Total energy = 1867.7285 kcal/mol (1866.8903 without restraints) Performing minimization step: 3332. Total energy = 1867.6109 kcal/mol (1866.7728 without restraints) Performing minimization step: 3333. Total energy = 1867.4929 kcal/mol (1866.6545 without restraints) Performing minimization step: 3334. Total energy = 1867.3748 kcal/mol (1866.5363 without restraints) Performing minimization step: 3335. Total energy = 1867.2568 kcal/mol (1866.4182 without restraints) Performing minimization step: 3336. Total energy = 1867.1391 kcal/mol (1866.3004 without restraints) Performing minimization step: 3337. Total energy = 1867.0213 kcal/mol (1866.1826 without restraints) Performing minimization step: 3338. Total energy = 1866.9036 kcal/mol (1866.0648 without restraints) Performing minimization step: 3339. Total energy = 1866.7864 kcal/mol (1865.9475 without restraints) Performing minimization step: 3340. Total energy = 1866.6689 kcal/mol (1865.8299 without restraints) Performing minimization step: 3341. Total energy = 1866.5517 kcal/mol (1865.7126 without restraints) Performing minimization step: 3342. Total energy = 1866.4344 kcal/mol (1865.5952 without restraints) Performing minimization step: 3343. Total energy = 1866.3178 kcal/mol (1865.4785 without restraints) Performing minimization step: 3344. Total energy = 1866.2007 kcal/mol (1865.3613 without restraints) Performing minimization step: 3345. Total energy = 1866.0838 kcal/mol (1865.2444 without restraints) Performing minimization step: 3346. Total energy = 1865.9670 kcal/mol (1865.1274 without restraints) Performing minimization step: 3347. Total energy = 1865.8501 kcal/mol (1865.0105 without restraints) Performing minimization step: 3348. Total energy = 1865.7334 kcal/mol (1864.8936 without restraints) Performing minimization step: 3349. Total energy = 1865.6167 kcal/mol (1864.7768 without restraints) Performing minimization step: 3350. Total energy = 1865.5000 kcal/mol (1864.6600 without restraints) Performing minimization step: 3351. Total energy = 1865.3838 kcal/mol (1864.5438 without restraints) Performing minimization step: 3352. Total energy = 1865.2676 kcal/mol (1864.4275 without restraints) Performing minimization step: 3353. Total energy = 1865.1517 kcal/mol (1864.3114 without restraints) Performing minimization step: 3354. Total energy = 1865.0357 kcal/mol (1864.1954 without restraints) Performing minimization step: 3355. Total energy = 1864.9194 kcal/mol (1864.0790 without restraints) Performing minimization step: 3356. Total energy = 1864.8035 kcal/mol (1863.9630 without restraints) Performing minimization step: 3357. Total energy = 1864.6875 kcal/mol (1863.8469 without restraints) Performing minimization step: 3358. Total energy = 1864.5717 kcal/mol (1863.7310 without restraints) Performing minimization step: 3359. Total energy = 1864.4559 kcal/mol (1863.6151 without restraints) Performing minimization step: 3360. Total energy = 1864.3404 kcal/mol (1863.4995 without restraints) Performing minimization step: 3361. Total energy = 1864.2247 kcal/mol (1863.3837 without restraints) Performing minimization step: 3362. Total energy = 1864.1092 kcal/mol (1863.2681 without restraints) Performing minimization step: 3363. Total energy = 1863.9938 kcal/mol (1863.1526 without restraints) Performing minimization step: 3364. Total energy = 1863.8786 kcal/mol (1863.0373 without restraints) Performing minimization step: 3365. Total energy = 1863.7634 kcal/mol (1862.9220 without restraints) Performing minimization step: 3366. Total energy = 1863.6482 kcal/mol (1862.8067 without restraints) Performing minimization step: 3367. Total energy = 1863.5331 kcal/mol (1862.6915 without restraints) Performing minimization step: 3368. Total energy = 1863.4183 kcal/mol (1862.5767 without restraints) Performing minimization step: 3369. Total energy = 1863.3036 kcal/mol (1862.4619 without restraints) Performing minimization step: 3370. Total energy = 1863.1888 kcal/mol (1862.3470 without restraints) Performing minimization step: 3371. Total energy = 1863.0741 kcal/mol (1862.2321 without restraints) Performing minimization step: 3372. Total energy = 1862.9598 kcal/mol (1862.1180 without restraints) Performing minimization step: 3373. Total energy = 1862.8454 kcal/mol (1862.0033 without restraints) Performing minimization step: 3374. Total energy = 1862.7308 kcal/mol (1861.8885 without restraints) Performing minimization step: 3375. Total energy = 1862.6163 kcal/mol (1861.7740 without restraints) Performing minimization step: 3376. Total energy = 1862.5020 kcal/mol (1861.6596 without restraints) Performing minimization step: 3377. Total energy = 1862.3880 kcal/mol (1861.5454 without restraints) Performing minimization step: 3378. Total energy = 1862.2739 kcal/mol (1861.4312 without restraints) Performing minimization step: 3379. Total energy = 1862.1599 kcal/mol (1861.3171 without restraints) Performing minimization step: 3380. Total energy = 1862.0459 kcal/mol (1861.2031 without restraints) Performing minimization step: 3381. Total energy = 1861.9321 kcal/mol (1861.0891 without restraints) Performing minimization step: 3382. Total energy = 1861.8182 kcal/mol (1860.9753 without restraints) Performing minimization step: 3383. Total energy = 1861.7050 kcal/mol (1860.8619 without restraints) Performing minimization step: 3384. Total energy = 1861.5917 kcal/mol (1860.7485 without restraints) Performing minimization step: 3385. Total energy = 1861.4782 kcal/mol (1860.6349 without restraints) Performing minimization step: 3386. Total energy = 1861.3649 kcal/mol (1860.5215 without restraints) Performing minimization step: 3387. Total energy = 1861.2516 kcal/mol (1860.4082 without restraints) Performing minimization step: 3388. Total energy = 1861.1386 kcal/mol (1860.2951 without restraints) Performing minimization step: 3389. Total energy = 1861.0255 kcal/mol (1860.1818 without restraints) Performing minimization step: 3390. Total energy = 1860.9125 kcal/mol (1860.0687 without restraints) Performing minimization step: 3391. Total energy = 1860.7997 kcal/mol (1859.9558 without restraints) Performing minimization step: 3392. Total energy = 1860.6871 kcal/mol (1859.8430 without restraints) Performing minimization step: 3393. Total energy = 1860.5742 kcal/mol (1859.7301 without restraints) Performing minimization step: 3394. Total energy = 1860.4618 kcal/mol (1859.6175 without restraints) Performing minimization step: 3395. Total energy = 1860.3495 kcal/mol (1859.5052 without restraints) Performing minimization step: 3396. Total energy = 1860.2370 kcal/mol (1859.3925 without restraints) Performing minimization step: 3397. Total energy = 1860.1248 kcal/mol (1859.2802 without restraints) Performing minimization step: 3398. Total energy = 1860.0124 kcal/mol (1859.1677 without restraints) Performing minimization step: 3399. Total energy = 1859.9001 kcal/mol (1859.0554 without restraints) Performing minimization step: 3400. Total energy = 1859.7880 kcal/mol (1858.9432 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 1859.6759 kcal/mol (1858.8310 without restraints) Performing minimization step: 3402. Total energy = 1859.5639 kcal/mol (1858.7188 without restraints) Performing minimization step: 3403. Total energy = 1859.4517 kcal/mol (1858.6065 without restraints) Performing minimization step: 3404. Total energy = 1859.3403 kcal/mol (1858.4951 without restraints) Performing minimization step: 3405. Total energy = 1859.2285 kcal/mol (1858.3832 without restraints) Performing minimization step: 3406. Total energy = 1859.1172 kcal/mol (1858.2718 without restraints) Performing minimization step: 3407. Total energy = 1859.0056 kcal/mol (1858.1601 without restraints) Performing minimization step: 3408. Total energy = 1858.8945 kcal/mol (1858.0489 without restraints) Performing minimization step: 3409. Total energy = 1858.7832 kcal/mol (1857.9376 without restraints) Performing minimization step: 3410. Total energy = 1858.6720 kcal/mol (1857.8261 without restraints) Performing minimization step: 3411. Total energy = 1858.5607 kcal/mol (1857.7148 without restraints) Performing minimization step: 3412. Total energy = 1858.4497 kcal/mol (1857.6037 without restraints) Performing minimization step: 3413. Total energy = 1858.3387 kcal/mol (1857.4925 without restraints) Performing minimization step: 3414. Total energy = 1858.2277 kcal/mol (1857.3814 without restraints) Performing minimization step: 3415. Total energy = 1858.1168 kcal/mol (1857.2704 without restraints) Performing minimization step: 3416. Total energy = 1858.0061 kcal/mol (1857.1596 without restraints) Performing minimization step: 3417. Total energy = 1857.8951 kcal/mol (1857.0485 without restraints) Performing minimization step: 3418. Total energy = 1857.7845 kcal/mol (1856.9378 without restraints) Performing minimization step: 3419. Total energy = 1857.6737 kcal/mol (1856.8269 without restraints) Performing minimization step: 3420. Total energy = 1857.5632 kcal/mol (1856.7163 without restraints) Performing minimization step: 3421. Total energy = 1857.4530 kcal/mol (1856.6060 without restraints) Performing minimization step: 3422. Total energy = 1857.3430 kcal/mol (1856.4960 without restraints) Performing minimization step: 3423. Total energy = 1857.2332 kcal/mol (1856.3860 without restraints) Performing minimization step: 3424. Total energy = 1857.1228 kcal/mol (1856.2755 without restraints) Performing minimization step: 3425. Total energy = 1857.0129 kcal/mol (1856.1655 without restraints) Performing minimization step: 3426. Total energy = 1856.9029 kcal/mol (1856.0554 without restraints) Performing minimization step: 3427. Total energy = 1856.7934 kcal/mol (1855.9458 without restraints) Performing minimization step: 3428. Total energy = 1856.6836 kcal/mol (1855.8358 without restraints) Performing minimization step: 3429. Total energy = 1856.5738 kcal/mol (1855.7260 without restraints) Performing minimization step: 3430. Total energy = 1856.4646 kcal/mol (1855.6167 without restraints) Performing minimization step: 3431. Total energy = 1856.3550 kcal/mol (1855.5070 without restraints) Performing minimization step: 3432. Total energy = 1856.2455 kcal/mol (1855.3974 without restraints) Performing minimization step: 3433. Total energy = 1856.1361 kcal/mol (1855.2878 without restraints) Performing minimization step: 3434. Total energy = 1856.0270 kcal/mol (1855.1786 without restraints) Performing minimization step: 3435. Total energy = 1855.9178 kcal/mol (1855.0693 without restraints) Performing minimization step: 3436. Total energy = 1855.8086 kcal/mol (1854.9601 without restraints) Performing minimization step: 3437. Total energy = 1855.6994 kcal/mol (1854.8506 without restraints) Performing minimization step: 3438. Total energy = 1855.5902 kcal/mol (1854.7415 without restraints) Performing minimization step: 3439. Total energy = 1855.4816 kcal/mol (1854.6327 without restraints) Performing minimization step: 3440. Total energy = 1855.3725 kcal/mol (1854.5235 without restraints) Performing minimization step: 3441. Total energy = 1855.2638 kcal/mol (1854.4147 without restraints) Performing minimization step: 3442. Total energy = 1855.1551 kcal/mol (1854.3059 without restraints) Performing minimization step: 3443. Total energy = 1855.0467 kcal/mol (1854.1974 without restraints) Performing minimization step: 3444. Total energy = 1854.9381 kcal/mol (1854.0886 without restraints) Performing minimization step: 3445. Total energy = 1854.8296 kcal/mol (1853.9800 without restraints) Performing minimization step: 3446. Total energy = 1854.7213 kcal/mol (1853.8716 without restraints) Performing minimization step: 3447. Total energy = 1854.6130 kcal/mol (1853.7632 without restraints) Performing minimization step: 3448. Total energy = 1854.5050 kcal/mol (1853.6551 without restraints) Performing minimization step: 3449. Total energy = 1854.3974 kcal/mol (1853.5474 without restraints) Performing minimization step: 3450. Total energy = 1854.2900 kcal/mol (1853.4399 without restraints) Performing minimization step: 3451. Total energy = 1854.1820 kcal/mol (1853.3318 without restraints) Performing minimization step: 3452. Total energy = 1854.0741 kcal/mol (1853.2238 without restraints) Performing minimization step: 3453. Total energy = 1853.9666 kcal/mol (1853.1162 without restraints) Performing minimization step: 3454. Total energy = 1853.8594 kcal/mol (1853.0089 without restraints) Performing minimization step: 3455. Total energy = 1853.7519 kcal/mol (1852.9013 without restraints) Performing minimization step: 3456. Total energy = 1853.6444 kcal/mol (1852.7937 without restraints) Performing minimization step: 3457. Total energy = 1853.5370 kcal/mol (1852.6861 without restraints) Performing minimization step: 3458. Total energy = 1853.4298 kcal/mol (1852.5789 without restraints) Performing minimization step: 3459. Total energy = 1853.3225 kcal/mol (1852.4715 without restraints) Performing minimization step: 3460. Total energy = 1853.2156 kcal/mol (1852.3645 without restraints) Performing minimization step: 3461. Total energy = 1853.1087 kcal/mol (1852.2574 without restraints) Performing minimization step: 3462. Total energy = 1853.0016 kcal/mol (1852.1502 without restraints) Performing minimization step: 3463. Total energy = 1852.8947 kcal/mol (1852.0434 without restraints) Performing minimization step: 3464. Total energy = 1852.7880 kcal/mol (1851.9363 without restraints) Performing minimization step: 3465. Total energy = 1852.6811 kcal/mol (1851.8294 without restraints) Performing minimization step: 3466. Total energy = 1852.5744 kcal/mol (1851.7226 without restraints) Performing minimization step: 3467. Total energy = 1852.4677 kcal/mol (1851.6158 without restraints) Performing minimization step: 3468. Total energy = 1852.3612 kcal/mol (1851.5091 without restraints) Performing minimization step: 3469. Total energy = 1852.2547 kcal/mol (1851.4025 without restraints) Performing minimization step: 3470. Total energy = 1852.1483 kcal/mol (1851.2960 without restraints) Performing minimization step: 3471. Total energy = 1852.0420 kcal/mol (1851.1896 without restraints) Performing minimization step: 3472. Total energy = 1851.9358 kcal/mol (1851.0833 without restraints) Performing minimization step: 3473. Total energy = 1851.8300 kcal/mol (1850.9774 without restraints) Performing minimization step: 3474. Total energy = 1851.7245 kcal/mol (1850.8717 without restraints) Performing minimization step: 3475. Total energy = 1851.6185 kcal/mol (1850.7657 without restraints) Performing minimization step: 3476. Total energy = 1851.5130 kcal/mol (1850.6603 without restraints) Performing minimization step: 3477. Total energy = 1851.4076 kcal/mol (1850.5546 without restraints) Performing minimization step: 3478. Total energy = 1851.3020 kcal/mol (1850.4488 without restraints) Performing minimization step: 3479. Total energy = 1851.1964 kcal/mol (1850.3431 without restraints) Performing minimization step: 3480. Total energy = 1851.0911 kcal/mol (1850.2379 without restraints) Performing minimization step: 3481. Total energy = 1850.9858 kcal/mol (1850.1323 without restraints) Performing minimization step: 3482. Total energy = 1850.8803 kcal/mol (1850.0267 without restraints) Performing minimization step: 3483. Total energy = 1850.7752 kcal/mol (1849.9215 without restraints) Performing minimization step: 3484. Total energy = 1850.6699 kcal/mol (1849.8160 without restraints) Performing minimization step: 3485. Total energy = 1850.5647 kcal/mol (1849.7108 without restraints) Performing minimization step: 3486. Total energy = 1850.4598 kcal/mol (1849.6057 without restraints) Performing minimization step: 3487. Total energy = 1850.3549 kcal/mol (1849.5007 without restraints) Performing minimization step: 3488. Total energy = 1850.2501 kcal/mol (1849.3959 without restraints) Performing minimization step: 3489. Total energy = 1850.1454 kcal/mol (1849.2911 without restraints) Performing minimization step: 3490. Total energy = 1850.0404 kcal/mol (1849.1859 without restraints) Performing minimization step: 3491. Total energy = 1849.9357 kcal/mol (1849.0811 without restraints) Performing minimization step: 3492. Total energy = 1849.8310 kcal/mol (1848.9763 without restraints) Performing minimization step: 3493. Total energy = 1849.7265 kcal/mol (1848.8716 without restraints) Performing minimization step: 3494. Total energy = 1849.6215 kcal/mol (1848.7665 without restraints) Performing minimization step: 3495. Total energy = 1849.5175 kcal/mol (1848.6624 without restraints) Performing minimization step: 3496. Total energy = 1849.4132 kcal/mol (1848.5580 without restraints) Performing minimization step: 3497. Total energy = 1849.3087 kcal/mol (1848.4534 without restraints) Performing minimization step: 3498. Total energy = 1849.2046 kcal/mol (1848.3492 without restraints) Performing minimization step: 3499. Total energy = 1849.1007 kcal/mol (1848.2451 without restraints) Performing minimization step: 3500. Total energy = 1848.9966 kcal/mol (1848.1410 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 1848.8927 kcal/mol (1848.0369 without restraints) Performing minimization step: 3502. Total energy = 1848.7888 kcal/mol (1847.9329 without restraints) Performing minimization step: 3503. Total energy = 1848.6853 kcal/mol (1847.8293 without restraints) Performing minimization step: 3504. Total energy = 1848.5817 kcal/mol (1847.7256 without restraints) Performing minimization step: 3505. Total energy = 1848.4779 kcal/mol (1847.6217 without restraints) Performing minimization step: 3506. Total energy = 1848.3743 kcal/mol (1847.5180 without restraints) Performing minimization step: 3507. Total energy = 1848.2710 kcal/mol (1847.4146 without restraints) Performing minimization step: 3508. Total energy = 1848.1676 kcal/mol (1847.3111 without restraints) Performing minimization step: 3509. Total energy = 1848.0643 kcal/mol (1847.2076 without restraints) Performing minimization step: 3510. Total energy = 1847.9612 kcal/mol (1847.1044 without restraints) Performing minimization step: 3511. Total energy = 1847.8580 kcal/mol (1847.0011 without restraints) Performing minimization step: 3512. Total energy = 1847.7551 kcal/mol (1846.8981 without restraints) Performing minimization step: 3513. Total energy = 1847.6523 kcal/mol (1846.7951 without restraints) Performing minimization step: 3514. Total energy = 1847.5495 kcal/mol (1846.6922 without restraints) Performing minimization step: 3515. Total energy = 1847.4466 kcal/mol (1846.5892 without restraints) Performing minimization step: 3516. Total energy = 1847.3440 kcal/mol (1846.4865 without restraints) Performing minimization step: 3517. Total energy = 1847.2412 kcal/mol (1846.3836 without restraints) Performing minimization step: 3518. Total energy = 1847.1387 kcal/mol (1846.2811 without restraints) Performing minimization step: 3519. Total energy = 1847.0362 kcal/mol (1846.1783 without restraints) Performing minimization step: 3520. Total energy = 1846.9337 kcal/mol (1846.0757 without restraints) Performing minimization step: 3521. Total energy = 1846.8312 kcal/mol (1845.9731 without restraints) Performing minimization step: 3522. Total energy = 1846.7288 kcal/mol (1845.8706 without restraints) Performing minimization step: 3523. Total energy = 1846.6267 kcal/mol (1845.7685 without restraints) Performing minimization step: 3524. Total energy = 1846.5246 kcal/mol (1845.6662 without restraints) Performing minimization step: 3525. Total energy = 1846.4226 kcal/mol (1845.5641 without restraints) Performing minimization step: 3526. Total energy = 1846.3205 kcal/mol (1845.4619 without restraints) Performing minimization step: 3527. Total energy = 1846.2186 kcal/mol (1845.3598 without restraints) Performing minimization step: 3528. Total energy = 1846.1169 kcal/mol (1845.2580 without restraints) Performing minimization step: 3529. Total energy = 1846.0152 kcal/mol (1845.1562 without restraints) Performing minimization step: 3530. Total energy = 1845.9138 kcal/mol (1845.0548 without restraints) Performing minimization step: 3531. Total energy = 1845.8123 kcal/mol (1844.9530 without restraints) Performing minimization step: 3532. Total energy = 1845.7107 kcal/mol (1844.8513 without restraints) Performing minimization step: 3533. Total energy = 1845.6097 kcal/mol (1844.7504 without restraints) Performing minimization step: 3534. Total energy = 1845.5087 kcal/mol (1844.6491 without restraints) Performing minimization step: 3535. Total energy = 1845.4075 kcal/mol (1844.5478 without restraints) Performing minimization step: 3536. Total energy = 1845.3062 kcal/mol (1844.4463 without restraints) Performing minimization step: 3537. Total energy = 1845.2052 kcal/mol (1844.3452 without restraints) Performing minimization step: 3538. Total energy = 1845.1041 kcal/mol (1844.2441 without restraints) Performing minimization step: 3539. Total energy = 1845.0031 kcal/mol (1844.1429 without restraints) Performing minimization step: 3540. Total energy = 1844.9025 kcal/mol (1844.0422 without restraints) Performing minimization step: 3541. Total energy = 1844.8018 kcal/mol (1843.9414 without restraints) Performing minimization step: 3542. Total energy = 1844.7009 kcal/mol (1843.8404 without restraints) Performing minimization step: 3543. Total energy = 1844.6005 kcal/mol (1843.7398 without restraints) Performing minimization step: 3544. Total energy = 1844.4998 kcal/mol (1843.6390 without restraints) Performing minimization step: 3545. Total energy = 1844.3991 kcal/mol (1843.5382 without restraints) Performing minimization step: 3546. Total energy = 1844.2988 kcal/mol (1843.4378 without restraints) Performing minimization step: 3547. Total energy = 1844.1984 kcal/mol (1843.3371 without restraints) Performing minimization step: 3548. Total energy = 1844.0979 kcal/mol (1843.2367 without restraints) Performing minimization step: 3549. Total energy = 1843.9977 kcal/mol (1843.1364 without restraints) Performing minimization step: 3550. Total energy = 1843.8978 kcal/mol (1843.0363 without restraints) Performing minimization step: 3551. Total energy = 1843.7974 kcal/mol (1842.9356 without restraints) Performing minimization step: 3552. Total energy = 1843.6971 kcal/mol (1842.8354 without restraints) Performing minimization step: 3553. Total energy = 1843.5970 kcal/mol (1842.7352 without restraints) Performing minimization step: 3554. Total energy = 1843.4970 kcal/mol (1842.6351 without restraints) Performing minimization step: 3555. Total energy = 1843.3975 kcal/mol (1842.5354 without restraints) Performing minimization step: 3556. Total energy = 1843.2976 kcal/mol (1842.4354 without restraints) Performing minimization step: 3557. Total energy = 1843.1979 kcal/mol (1842.3355 without restraints) Performing minimization step: 3558. Total energy = 1843.0983 kcal/mol (1842.2359 without restraints) Performing minimization step: 3559. Total energy = 1842.9988 kcal/mol (1842.1362 without restraints) Performing minimization step: 3560. Total energy = 1842.8994 kcal/mol (1842.0367 without restraints) Performing minimization step: 3561. Total energy = 1842.8000 kcal/mol (1841.9373 without restraints) Performing minimization step: 3562. Total energy = 1842.7007 kcal/mol (1841.8378 without restraints) Performing minimization step: 3563. Total energy = 1842.6017 kcal/mol (1841.7386 without restraints) Performing minimization step: 3564. Total energy = 1842.5024 kcal/mol (1841.6393 without restraints) Performing minimization step: 3565. Total energy = 1842.4030 kcal/mol (1841.5397 without restraints) Performing minimization step: 3566. Total energy = 1842.3039 kcal/mol (1841.4405 without restraints) Performing minimization step: 3567. Total energy = 1842.2051 kcal/mol (1841.3415 without restraints) Performing minimization step: 3568. Total energy = 1842.1061 kcal/mol (1841.2424 without restraints) Performing minimization step: 3569. Total energy = 1842.0076 kcal/mol (1841.1438 without restraints) Performing minimization step: 3570. Total energy = 1841.9087 kcal/mol (1841.0448 without restraints) Performing minimization step: 3571. Total energy = 1841.8101 kcal/mol (1840.9460 without restraints) Performing minimization step: 3572. Total energy = 1841.7116 kcal/mol (1840.8475 without restraints) Performing minimization step: 3573. Total energy = 1841.6131 kcal/mol (1840.7488 without restraints) Performing minimization step: 3574. Total energy = 1841.5145 kcal/mol (1840.6501 without restraints) Performing minimization step: 3575. Total energy = 1841.4159 kcal/mol (1840.5513 without restraints) Performing minimization step: 3576. Total energy = 1841.3175 kcal/mol (1840.4529 without restraints) Performing minimization step: 3577. Total energy = 1841.2193 kcal/mol (1840.3547 without restraints) Performing minimization step: 3578. Total energy = 1841.1212 kcal/mol (1840.2563 without restraints) Performing minimization step: 3579. Total energy = 1841.0234 kcal/mol (1840.1585 without restraints) Performing minimization step: 3580. Total energy = 1840.9254 kcal/mol (1840.0603 without restraints) Performing minimization step: 3581. Total energy = 1840.8274 kcal/mol (1839.9621 without restraints) Performing minimization step: 3582. Total energy = 1840.7296 kcal/mol (1839.8643 without restraints) Performing minimization step: 3583. Total energy = 1840.6322 kcal/mol (1839.7672 without restraints) Performing minimization step: 3584. Total energy = 1840.5348 kcal/mol (1839.6691 without restraints) Performing minimization step: 3585. Total energy = 1840.4369 kcal/mol (1839.5712 without restraints) Performing minimization step: 3586. Total energy = 1840.3392 kcal/mol (1839.4734 without restraints) Performing minimization step: 3587. Total energy = 1840.2415 kcal/mol (1839.3755 without restraints) Performing minimization step: 3588. Total energy = 1840.1439 kcal/mol (1839.2778 without restraints) Performing minimization step: 3589. Total energy = 1840.0464 kcal/mol (1839.1802 without restraints) Performing minimization step: 3590. Total energy = 1839.9490 kcal/mol (1839.0827 without restraints) Performing minimization step: 3591. Total energy = 1839.8517 kcal/mol (1838.9852 without restraints) Performing minimization step: 3592. Total energy = 1839.7546 kcal/mol (1838.8881 without restraints) Performing minimization step: 3593. Total energy = 1839.6576 kcal/mol (1838.7908 without restraints) Performing minimization step: 3594. Total energy = 1839.5607 kcal/mol (1838.6941 without restraints) Performing minimization step: 3595. Total energy = 1839.4641 kcal/mol (1838.5972 without restraints) Performing minimization step: 3596. Total energy = 1839.3674 kcal/mol (1838.5004 without restraints) Performing minimization step: 3597. Total energy = 1839.2708 kcal/mol (1838.4035 without restraints) Performing minimization step: 3598. Total energy = 1839.1742 kcal/mol (1838.3070 without restraints) Performing minimization step: 3599. Total energy = 1839.0776 kcal/mol (1838.2101 without restraints) Performing minimization step: 3600. Total energy = 1838.9806 kcal/mol (1838.1131 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 1838.8842 kcal/mol (1838.0165 without restraints) Performing minimization step: 3602. Total energy = 1838.7876 kcal/mol (1837.9197 without restraints) Performing minimization step: 3603. Total energy = 1838.6911 kcal/mol (1837.8231 without restraints) Performing minimization step: 3604. Total energy = 1838.5949 kcal/mol (1837.7268 without restraints) Performing minimization step: 3605. Total energy = 1838.4991 kcal/mol (1837.6309 without restraints) Performing minimization step: 3606. Total energy = 1838.4031 kcal/mol (1837.5347 without restraints) Performing minimization step: 3607. Total energy = 1838.3069 kcal/mol (1837.4384 without restraints) Performing minimization step: 3608. Total energy = 1838.2109 kcal/mol (1837.3424 without restraints) Performing minimization step: 3609. Total energy = 1838.1154 kcal/mol (1837.2468 without restraints) Performing minimization step: 3610. Total energy = 1838.0198 kcal/mol (1837.1510 without restraints) Performing minimization step: 3611. Total energy = 1837.9242 kcal/mol (1837.0553 without restraints) Performing minimization step: 3612. Total energy = 1837.8290 kcal/mol (1836.9600 without restraints) Performing minimization step: 3613. Total energy = 1837.7335 kcal/mol (1836.8643 without restraints) Performing minimization step: 3614. Total energy = 1837.6380 kcal/mol (1836.7687 without restraints) Performing minimization step: 3615. Total energy = 1837.5426 kcal/mol (1836.6731 without restraints) Performing minimization step: 3616. Total energy = 1837.4470 kcal/mol (1836.5774 without restraints) Performing minimization step: 3617. Total energy = 1837.3513 kcal/mol (1836.4816 without restraints) Performing minimization step: 3618. Total energy = 1837.2561 kcal/mol (1836.3862 without restraints) Performing minimization step: 3619. Total energy = 1837.1607 kcal/mol (1836.2907 without restraints) Performing minimization step: 3620. Total energy = 1837.0655 kcal/mol (1836.1953 without restraints) Performing minimization step: 3621. Total energy = 1836.9703 kcal/mol (1836.1002 without restraints) Performing minimization step: 3622. Total energy = 1836.8753 kcal/mol (1836.0049 without restraints) Performing minimization step: 3623. Total energy = 1836.7802 kcal/mol (1835.9096 without restraints) Performing minimization step: 3624. Total energy = 1836.6851 kcal/mol (1835.8145 without restraints) Performing minimization step: 3625. Total energy = 1836.5901 kcal/mol (1835.7193 without restraints) Performing minimization step: 3626. Total energy = 1836.4950 kcal/mol (1835.6241 without restraints) Performing minimization step: 3627. Total energy = 1836.4002 kcal/mol (1835.5292 without restraints) Performing minimization step: 3628. Total energy = 1836.3054 kcal/mol (1835.4343 without restraints) Performing minimization step: 3629. Total energy = 1836.2107 kcal/mol (1835.3395 without restraints) Performing minimization step: 3630. Total energy = 1836.1163 kcal/mol (1835.2449 without restraints) Performing minimization step: 3631. Total energy = 1836.0221 kcal/mol (1835.1506 without restraints) Performing minimization step: 3632. Total energy = 1835.9276 kcal/mol (1835.0560 without restraints) Performing minimization step: 3633. Total energy = 1835.8332 kcal/mol (1834.9614 without restraints) Performing minimization step: 3634. Total energy = 1835.7390 kcal/mol (1834.8674 without restraints) Performing minimization step: 3635. Total energy = 1835.6452 kcal/mol (1834.7732 without restraints) Performing minimization step: 3636. Total energy = 1835.5510 kcal/mol (1834.6788 without restraints) Performing minimization step: 3637. Total energy = 1835.4568 kcal/mol (1834.5845 without restraints) Performing minimization step: 3638. Total energy = 1835.3628 kcal/mol (1834.4905 without restraints) Performing minimization step: 3639. Total energy = 1835.2692 kcal/mol (1834.3967 without restraints) Performing minimization step: 3640. Total energy = 1835.1755 kcal/mol (1834.3028 without restraints) Performing minimization step: 3641. Total energy = 1835.0813 kcal/mol (1834.2085 without restraints) Performing minimization step: 3642. Total energy = 1834.9874 kcal/mol (1834.1144 without restraints) Performing minimization step: 3643. Total energy = 1834.8938 kcal/mol (1834.0207 without restraints) Performing minimization step: 3644. Total energy = 1834.8001 kcal/mol (1833.9270 without restraints) Performing minimization step: 3645. Total energy = 1834.7070 kcal/mol (1833.8336 without restraints) Performing minimization step: 3646. Total energy = 1834.6136 kcal/mol (1833.7402 without restraints) Performing minimization step: 3647. Total energy = 1834.5202 kcal/mol (1833.6466 without restraints) Performing minimization step: 3648. Total energy = 1834.4268 kcal/mol (1833.5531 without restraints) Performing minimization step: 3649. Total energy = 1834.3334 kcal/mol (1833.4595 without restraints) Performing minimization step: 3650. Total energy = 1834.2401 kcal/mol (1833.3662 without restraints) Performing minimization step: 3651. Total energy = 1834.1469 kcal/mol (1833.2728 without restraints) Performing minimization step: 3652. Total energy = 1834.0537 kcal/mol (1833.1795 without restraints) Performing minimization step: 3653. Total energy = 1833.9606 kcal/mol (1833.0863 without restraints) Performing minimization step: 3654. Total energy = 1833.8680 kcal/mol (1832.9935 without restraints) Performing minimization step: 3655. Total energy = 1833.7752 kcal/mol (1832.9007 without restraints) Performing minimization step: 3656. Total energy = 1833.6824 kcal/mol (1832.8076 without restraints) Performing minimization step: 3657. Total energy = 1833.5898 kcal/mol (1832.7151 without restraints) Performing minimization step: 3658. Total energy = 1833.4975 kcal/mol (1832.6225 without restraints) Performing minimization step: 3659. Total energy = 1833.4048 kcal/mol (1832.5297 without restraints) Performing minimization step: 3660. Total energy = 1833.3129 kcal/mol (1832.4377 without restraints) Performing minimization step: 3661. Total energy = 1833.2204 kcal/mol (1832.3450 without restraints) Performing minimization step: 3662. Total energy = 1833.1279 kcal/mol (1832.2524 without restraints) Performing minimization step: 3663. Total energy = 1833.0359 kcal/mol (1832.1602 without restraints) Performing minimization step: 3664. Total energy = 1832.9435 kcal/mol (1832.0677 without restraints) Performing minimization step: 3665. Total energy = 1832.8513 kcal/mol (1831.9752 without restraints) Performing minimization step: 3666. Total energy = 1832.7592 kcal/mol (1831.8831 without restraints) Performing minimization step: 3667. Total energy = 1832.6676 kcal/mol (1831.7914 without restraints) Performing minimization step: 3668. Total energy = 1832.5754 kcal/mol (1831.6991 without restraints) Performing minimization step: 3669. Total energy = 1832.4834 kcal/mol (1831.6070 without restraints) Performing minimization step: 3670. Total energy = 1832.3916 kcal/mol (1831.5151 without restraints) Performing minimization step: 3671. Total energy = 1832.2997 kcal/mol (1831.4230 without restraints) Performing minimization step: 3672. Total energy = 1832.2081 kcal/mol (1831.3313 without restraints) Performing minimization step: 3673. Total energy = 1832.1163 kcal/mol (1831.2393 without restraints) Performing minimization step: 3674. Total energy = 1832.0247 kcal/mol (1831.1478 without restraints) Performing minimization step: 3675. Total energy = 1831.9331 kcal/mol (1831.0558 without restraints) Performing minimization step: 3676. Total energy = 1831.8415 kcal/mol (1830.9642 without restraints) Performing minimization step: 3677. Total energy = 1831.7500 kcal/mol (1830.8726 without restraints) Performing minimization step: 3678. Total energy = 1831.6586 kcal/mol (1830.7810 without restraints) Performing minimization step: 3679. Total energy = 1831.5672 kcal/mol (1830.6894 without restraints) Performing minimization step: 3680. Total energy = 1831.4758 kcal/mol (1830.5979 without restraints) Performing minimization step: 3681. Total energy = 1831.3849 kcal/mol (1830.5067 without restraints) Performing minimization step: 3682. Total energy = 1831.2935 kcal/mol (1830.4154 without restraints) Performing minimization step: 3683. Total energy = 1831.2024 kcal/mol (1830.3241 without restraints) Performing minimization step: 3684. Total energy = 1831.1112 kcal/mol (1830.2328 without restraints) Performing minimization step: 3685. Total energy = 1831.0201 kcal/mol (1830.1415 without restraints) Performing minimization step: 3686. Total energy = 1830.9291 kcal/mol (1830.0505 without restraints) Performing minimization step: 3687. Total energy = 1830.8385 kcal/mol (1829.9598 without restraints) Performing minimization step: 3688. Total energy = 1830.7478 kcal/mol (1829.8689 without restraints) Performing minimization step: 3689. Total energy = 1830.6570 kcal/mol (1829.7780 without restraints) Performing minimization step: 3690. Total energy = 1830.5666 kcal/mol (1829.6874 without restraints) Performing minimization step: 3691. Total energy = 1830.4759 kcal/mol (1829.5965 without restraints) Performing minimization step: 3692. Total energy = 1830.3856 kcal/mol (1829.5061 without restraints) Performing minimization step: 3693. Total energy = 1830.2951 kcal/mol (1829.4155 without restraints) Performing minimization step: 3694. Total energy = 1830.2047 kcal/mol (1829.3250 without restraints) Performing minimization step: 3695. Total energy = 1830.1143 kcal/mol (1829.2344 without restraints) Performing minimization step: 3696. Total energy = 1830.0242 kcal/mol (1829.1443 without restraints) Performing minimization step: 3697. Total energy = 1829.9343 kcal/mol (1829.0544 without restraints) Performing minimization step: 3698. Total energy = 1829.8443 kcal/mol (1828.9641 without restraints) Performing minimization step: 3699. Total energy = 1829.7544 kcal/mol (1828.8740 without restraints) Performing minimization step: 3700. Total energy = 1829.6643 kcal/mol (1828.7838 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 1829.5743 kcal/mol (1828.6937 without restraints) Performing minimization step: 3702. Total energy = 1829.4841 kcal/mol (1828.6034 without restraints) Performing minimization step: 3703. Total energy = 1829.3945 kcal/mol (1828.5136 without restraints) Performing minimization step: 3704. Total energy = 1829.3049 kcal/mol (1828.4239 without restraints) Performing minimization step: 3705. Total energy = 1829.2153 kcal/mol (1828.3341 without restraints) Performing minimization step: 3706. Total energy = 1829.1256 kcal/mol (1828.2443 without restraints) Performing minimization step: 3707. Total energy = 1829.0358 kcal/mol (1828.1543 without restraints) Performing minimization step: 3708. Total energy = 1828.9463 kcal/mol (1828.0648 without restraints) Performing minimization step: 3709. Total energy = 1828.8573 kcal/mol (1827.9756 without restraints) Performing minimization step: 3710. Total energy = 1828.7676 kcal/mol (1827.8858 without restraints) Performing minimization step: 3711. Total energy = 1828.6782 kcal/mol (1827.7962 without restraints) Performing minimization step: 3712. Total energy = 1828.5890 kcal/mol (1827.7070 without restraints) Performing minimization step: 3713. Total energy = 1828.5003 kcal/mol (1827.6180 without restraints) Performing minimization step: 3714. Total energy = 1828.4115 kcal/mol (1827.5291 without restraints) Performing minimization step: 3715. Total energy = 1828.3223 kcal/mol (1827.4398 without restraints) Performing minimization step: 3716. Total energy = 1828.2333 kcal/mol (1827.3507 without restraints) Performing minimization step: 3717. Total energy = 1828.1444 kcal/mol (1827.2616 without restraints) Performing minimization step: 3718. Total energy = 1828.0557 kcal/mol (1827.1728 without restraints) Performing minimization step: 3719. Total energy = 1827.9670 kcal/mol (1827.0840 without restraints) Performing minimization step: 3720. Total energy = 1827.8782 kcal/mol (1826.9950 without restraints) Performing minimization step: 3721. Total energy = 1827.7895 kcal/mol (1826.9062 without restraints) Performing minimization step: 3722. Total energy = 1827.7013 kcal/mol (1826.8179 without restraints) Performing minimization step: 3723. Total energy = 1827.6125 kcal/mol (1826.7290 without restraints) Performing minimization step: 3724. Total energy = 1827.5239 kcal/mol (1826.6400 without restraints) Performing minimization step: 3725. Total energy = 1827.4354 kcal/mol (1826.5515 without restraints) Performing minimization step: 3726. Total energy = 1827.3469 kcal/mol (1826.4629 without restraints) Performing minimization step: 3727. Total energy = 1827.2589 kcal/mol (1826.3748 without restraints) Performing minimization step: 3728. Total energy = 1827.1706 kcal/mol (1826.2863 without restraints) Performing minimization step: 3729. Total energy = 1827.0823 kcal/mol (1826.1979 without restraints) Performing minimization step: 3730. Total energy = 1826.9942 kcal/mol (1826.1096 without restraints) Performing minimization step: 3731. Total energy = 1826.9060 kcal/mol (1826.0214 without restraints) Performing minimization step: 3732. Total energy = 1826.8179 kcal/mol (1825.9331 without restraints) Performing minimization step: 3733. Total energy = 1826.7299 kcal/mol (1825.8449 without restraints) Performing minimization step: 3734. Total energy = 1826.6419 kcal/mol (1825.7568 without restraints) Performing minimization step: 3735. Total energy = 1826.5540 kcal/mol (1825.6687 without restraints) Performing minimization step: 3736. Total energy = 1826.4661 kcal/mol (1825.5807 without restraints) Performing minimization step: 3737. Total energy = 1826.3783 kcal/mol (1825.4928 without restraints) Performing minimization step: 3738. Total energy = 1826.2906 kcal/mol (1825.4050 without restraints) Performing minimization step: 3739. Total energy = 1826.2030 kcal/mol (1825.3172 without restraints) Performing minimization step: 3740. Total energy = 1826.1155 kcal/mol (1825.2297 without restraints) Performing minimization step: 3741. Total energy = 1826.0284 kcal/mol (1825.1424 without restraints) Performing minimization step: 3742. Total energy = 1825.9409 kcal/mol (1825.0547 without restraints) Performing minimization step: 3743. Total energy = 1825.8533 kcal/mol (1824.9670 without restraints) Performing minimization step: 3744. Total energy = 1825.7659 kcal/mol (1824.8795 without restraints) Performing minimization step: 3745. Total energy = 1825.6789 kcal/mol (1824.7922 without restraints) Performing minimization step: 3746. Total energy = 1825.5916 kcal/mol (1824.7049 without restraints) Performing minimization step: 3747. Total energy = 1825.5048 kcal/mol (1824.6180 without restraints) Performing minimization step: 3748. Total energy = 1825.4174 kcal/mol (1824.5304 without restraints) Performing minimization step: 3749. Total energy = 1825.3305 kcal/mol (1824.4434 without restraints) Performing minimization step: 3750. Total energy = 1825.2434 kcal/mol (1824.3561 without restraints) Performing minimization step: 3751. Total energy = 1825.1568 kcal/mol (1824.2694 without restraints) Performing minimization step: 3752. Total energy = 1825.0700 kcal/mol (1824.1826 without restraints) Performing minimization step: 3753. Total energy = 1824.9833 kcal/mol (1824.0956 without restraints) Performing minimization step: 3754. Total energy = 1824.8963 kcal/mol (1824.0085 without restraints) Performing minimization step: 3755. Total energy = 1824.8096 kcal/mol (1823.9216 without restraints) Performing minimization step: 3756. Total energy = 1824.7231 kcal/mol (1823.8350 without restraints) Performing minimization step: 3757. Total energy = 1824.6369 kcal/mol (1823.7486 without restraints) Performing minimization step: 3758. Total energy = 1824.5503 kcal/mol (1823.6620 without restraints) Performing minimization step: 3759. Total energy = 1824.4641 kcal/mol (1823.5756 without restraints) Performing minimization step: 3760. Total energy = 1824.3789 kcal/mol (1823.4903 without restraints) Performing minimization step: 3761. Total energy = 1824.2927 kcal/mol (1823.4039 without restraints) Performing minimization step: 3762. Total energy = 1824.2062 kcal/mol (1823.3173 without restraints) Performing minimization step: 3763. Total energy = 1824.1201 kcal/mol (1823.2311 without restraints) Performing minimization step: 3764. Total energy = 1824.0337 kcal/mol (1823.1445 without restraints) Performing minimization step: 3765. Total energy = 1823.9477 kcal/mol (1823.0583 without restraints) Performing minimization step: 3766. Total energy = 1823.8618 kcal/mol (1822.9724 without restraints) Performing minimization step: 3767. Total energy = 1823.7761 kcal/mol (1822.8865 without restraints) Performing minimization step: 3768. Total energy = 1823.6905 kcal/mol (1822.8008 without restraints) Performing minimization step: 3769. Total energy = 1823.6047 kcal/mol (1822.7148 without restraints) Performing minimization step: 3770. Total energy = 1823.5189 kcal/mol (1822.6289 without restraints) Performing minimization step: 3771. Total energy = 1823.4332 kcal/mol (1822.5430 without restraints) Performing minimization step: 3772. Total energy = 1823.3477 kcal/mol (1822.4574 without restraints) Performing minimization step: 3773. Total energy = 1823.2622 kcal/mol (1822.3720 without restraints) Performing minimization step: 3774. Total energy = 1823.1770 kcal/mol (1822.2864 without restraints) Performing minimization step: 3775. Total energy = 1823.0917 kcal/mol (1822.2010 without restraints) Performing minimization step: 3776. Total energy = 1823.0062 kcal/mol (1822.1154 without restraints) Performing minimization step: 3777. Total energy = 1822.9209 kcal/mol (1822.0299 without restraints) Performing minimization step: 3778. Total energy = 1822.8360 kcal/mol (1821.9451 without restraints) Performing minimization step: 3779. Total energy = 1822.7508 kcal/mol (1821.8594 without restraints) Performing minimization step: 3780. Total energy = 1822.6655 kcal/mol (1821.7741 without restraints) Performing minimization step: 3781. Total energy = 1822.5805 kcal/mol (1821.6890 without restraints) Performing minimization step: 3782. Total energy = 1822.4954 kcal/mol (1821.6038 without restraints) Performing minimization step: 3783. Total energy = 1822.4102 kcal/mol (1821.5184 without restraints) Performing minimization step: 3784. Total energy = 1822.3252 kcal/mol (1821.4332 without restraints) Performing minimization step: 3785. Total energy = 1822.2403 kcal/mol (1821.3482 without restraints) Performing minimization step: 3786. Total energy = 1822.1554 kcal/mol (1821.2632 without restraints) Performing minimization step: 3787. Total energy = 1822.0709 kcal/mol (1821.1785 without restraints) Performing minimization step: 3788. Total energy = 1821.9862 kcal/mol (1821.0937 without restraints) Performing minimization step: 3789. Total energy = 1821.9015 kcal/mol (1821.0089 without restraints) Performing minimization step: 3790. Total energy = 1821.8171 kcal/mol (1820.9243 without restraints) Performing minimization step: 3791. Total energy = 1821.7323 kcal/mol (1820.8394 without restraints) Performing minimization step: 3792. Total energy = 1821.6480 kcal/mol (1820.7549 without restraints) Performing minimization step: 3793. Total energy = 1821.5635 kcal/mol (1820.6703 without restraints) Performing minimization step: 3794. Total energy = 1821.4793 kcal/mol (1820.5860 without restraints) Performing minimization step: 3795. Total energy = 1821.3950 kcal/mol (1820.5015 without restraints) Performing minimization step: 3796. Total energy = 1821.3107 kcal/mol (1820.4171 without restraints) Performing minimization step: 3797. Total energy = 1821.2264 kcal/mol (1820.3326 without restraints) Performing minimization step: 3798. Total energy = 1821.1423 kcal/mol (1820.2485 without restraints) Performing minimization step: 3799. Total energy = 1821.0583 kcal/mol (1820.1643 without restraints) Performing minimization step: 3800. Total energy = 1820.9746 kcal/mol (1820.0804 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 1820.8910 kcal/mol (1819.9967 without restraints) Performing minimization step: 3802. Total energy = 1820.8071 kcal/mol (1819.9126 without restraints) Performing minimization step: 3803. Total energy = 1820.7230 kcal/mol (1819.8284 without restraints) Performing minimization step: 3804. Total energy = 1820.6398 kcal/mol (1819.7451 without restraints) Performing minimization step: 3805. Total energy = 1820.5560 kcal/mol (1819.6611 without restraints) Performing minimization step: 3806. Total energy = 1820.4723 kcal/mol (1819.5772 without restraints) Performing minimization step: 3807. Total energy = 1820.3886 kcal/mol (1819.4934 without restraints) Performing minimization step: 3808. Total energy = 1820.3051 kcal/mol (1819.4098 without restraints) Performing minimization step: 3809. Total energy = 1820.2218 kcal/mol (1819.3265 without restraints) Performing minimization step: 3810. Total energy = 1820.1382 kcal/mol (1819.2426 without restraints) Performing minimization step: 3811. Total energy = 1820.0548 kcal/mol (1819.1590 without restraints) Performing minimization step: 3812. Total energy = 1819.9715 kcal/mol (1819.0757 without restraints) Performing minimization step: 3813. Total energy = 1819.8882 kcal/mol (1818.9921 without restraints) Performing minimization step: 3814. Total energy = 1819.8051 kcal/mol (1818.9090 without restraints) Performing minimization step: 3815. Total energy = 1819.7220 kcal/mol (1818.8255 without restraints) Performing minimization step: 3816. Total energy = 1819.6385 kcal/mol (1818.7420 without restraints) Performing minimization step: 3817. Total energy = 1819.5555 kcal/mol (1818.6590 without restraints) Performing minimization step: 3818. Total energy = 1819.4727 kcal/mol (1818.5760 without restraints) Performing minimization step: 3819. Total energy = 1819.3897 kcal/mol (1818.4928 without restraints) Performing minimization step: 3820. Total energy = 1819.3073 kcal/mol (1818.4103 without restraints) Performing minimization step: 3821. Total energy = 1819.2244 kcal/mol (1818.3272 without restraints) Performing minimization step: 3822. Total energy = 1819.1416 kcal/mol (1818.2443 without restraints) Performing minimization step: 3823. Total energy = 1819.0591 kcal/mol (1818.1617 without restraints) Performing minimization step: 3824. Total energy = 1818.9764 kcal/mol (1818.0788 without restraints) Performing minimization step: 3825. Total energy = 1818.8941 kcal/mol (1817.9964 without restraints) Performing minimization step: 3826. Total energy = 1818.8115 kcal/mol (1817.9136 without restraints) Performing minimization step: 3827. Total energy = 1818.7290 kcal/mol (1817.8309 without restraints) Performing minimization step: 3828. Total energy = 1818.6467 kcal/mol (1817.7485 without restraints) Performing minimization step: 3829. Total energy = 1818.5643 kcal/mol (1817.6660 without restraints) Performing minimization step: 3830. Total energy = 1818.4822 kcal/mol (1817.5837 without restraints) Performing minimization step: 3831. Total energy = 1818.3999 kcal/mol (1817.5013 without restraints) Performing minimization step: 3832. Total energy = 1818.3182 kcal/mol (1817.4195 without restraints) Performing minimization step: 3833. Total energy = 1818.2360 kcal/mol (1817.3371 without restraints) Performing minimization step: 3834. Total energy = 1818.1541 kcal/mol (1817.2554 without restraints) Performing minimization step: 3835. Total energy = 1818.0723 kcal/mol (1817.1731 without restraints) Performing minimization step: 3836. Total energy = 1817.9907 kcal/mol (1817.0915 without restraints) Performing minimization step: 3837. Total energy = 1817.9088 kcal/mol (1817.0093 without restraints) Performing minimization step: 3838. Total energy = 1817.8268 kcal/mol (1816.9272 without restraints) Performing minimization step: 3839. Total energy = 1817.7449 kcal/mol (1816.8452 without restraints) Performing minimization step: 3840. Total energy = 1817.6630 kcal/mol (1816.7632 without restraints) Performing minimization step: 3841. Total energy = 1817.5812 kcal/mol (1816.6812 without restraints) Performing minimization step: 3842. Total energy = 1817.4995 kcal/mol (1816.5993 without restraints) Performing minimization step: 3843. Total energy = 1817.4178 kcal/mol (1816.5175 without restraints) Performing minimization step: 3844. Total energy = 1817.3362 kcal/mol (1816.4357 without restraints) Performing minimization step: 3845. Total energy = 1817.2545 kcal/mol (1816.3541 without restraints) Performing minimization step: 3846. Total energy = 1817.1731 kcal/mol (1816.2724 without restraints) Performing minimization step: 3847. Total energy = 1817.0916 kcal/mol (1816.1907 without restraints) Performing minimization step: 3848. Total energy = 1817.0103 kcal/mol (1816.1093 without restraints) Performing minimization step: 3849. Total energy = 1816.9287 kcal/mol (1816.0276 without restraints) Performing minimization step: 3850. Total energy = 1816.8476 kcal/mol (1815.9463 without restraints) Performing minimization step: 3851. Total energy = 1816.7663 kcal/mol (1815.8649 without restraints) Performing minimization step: 3852. Total energy = 1816.6852 kcal/mol (1815.7836 without restraints) Performing minimization step: 3853. Total energy = 1816.6040 kcal/mol (1815.7023 without restraints) Performing minimization step: 3854. Total energy = 1816.5229 kcal/mol (1815.6211 without restraints) Performing minimization step: 3855. Total energy = 1816.4419 kcal/mol (1815.5398 without restraints) Performing minimization step: 3856. Total energy = 1816.3608 kcal/mol (1815.4587 without restraints) Performing minimization step: 3857. Total energy = 1816.2801 kcal/mol (1815.3778 without restraints) Performing minimization step: 3858. Total energy = 1816.1994 kcal/mol (1815.2969 without restraints) Performing minimization step: 3859. Total energy = 1816.1183 kcal/mol (1815.2157 without restraints) Performing minimization step: 3860. Total energy = 1816.0375 kcal/mol (1815.1347 without restraints) Performing minimization step: 3861. Total energy = 1815.9572 kcal/mol (1815.0544 without restraints) Performing minimization step: 3862. Total energy = 1815.8771 kcal/mol (1814.9741 without restraints) Performing minimization step: 3863. Total energy = 1815.7964 kcal/mol (1814.8933 without restraints) Performing minimization step: 3864. Total energy = 1815.7159 kcal/mol (1814.8125 without restraints) Performing minimization step: 3865. Total energy = 1815.6354 kcal/mol (1814.7321 without restraints) Performing minimization step: 3866. Total energy = 1815.5551 kcal/mol (1814.6515 without restraints) Performing minimization step: 3867. Total energy = 1815.4746 kcal/mol (1814.5709 without restraints) Performing minimization step: 3868. Total energy = 1815.3939 kcal/mol (1814.4899 without restraints) Performing minimization step: 3869. Total energy = 1815.3131 kcal/mol (1814.4092 without restraints) Performing minimization step: 3870. Total energy = 1815.2329 kcal/mol (1814.3288 without restraints) Performing minimization step: 3871. Total energy = 1815.1530 kcal/mol (1814.2487 without restraints) Performing minimization step: 3872. Total energy = 1815.0730 kcal/mol (1814.1687 without restraints) Performing minimization step: 3873. Total energy = 1814.9930 kcal/mol (1814.0884 without restraints) Performing minimization step: 3874. Total energy = 1814.9130 kcal/mol (1814.0082 without restraints) Performing minimization step: 3875. Total energy = 1814.8332 kcal/mol (1813.9283 without restraints) Performing minimization step: 3876. Total energy = 1814.7532 kcal/mol (1813.8482 without restraints) Performing minimization step: 3877. Total energy = 1814.6734 kcal/mol (1813.7683 without restraints) Performing minimization step: 3878. Total energy = 1814.5944 kcal/mol (1813.6891 without restraints) Performing minimization step: 3879. Total energy = 1814.5146 kcal/mol (1813.6092 without restraints) Performing minimization step: 3880. Total energy = 1814.4351 kcal/mol (1813.5295 without restraints) Performing minimization step: 3881. Total energy = 1814.3552 kcal/mol (1813.4494 without restraints) Performing minimization step: 3882. Total energy = 1814.2756 kcal/mol (1813.3697 without restraints) Performing minimization step: 3883. Total energy = 1814.1963 kcal/mol (1813.2901 without restraints) Performing minimization step: 3884. Total energy = 1814.1167 kcal/mol (1813.2105 without restraints) Performing minimization step: 3885. Total energy = 1814.0372 kcal/mol (1813.1309 without restraints) Performing minimization step: 3886. Total energy = 1813.9581 kcal/mol (1813.0517 without restraints) Performing minimization step: 3887. Total energy = 1813.8789 kcal/mol (1812.9723 without restraints) Performing minimization step: 3888. Total energy = 1813.8000 kcal/mol (1812.8932 without restraints) Performing minimization step: 3889. Total energy = 1813.7207 kcal/mol (1812.8138 without restraints) Performing minimization step: 3890. Total energy = 1813.6420 kcal/mol (1812.7350 without restraints) Performing minimization step: 3891. Total energy = 1813.5631 kcal/mol (1812.6559 without restraints) Performing minimization step: 3892. Total energy = 1813.4839 kcal/mol (1812.5766 without restraints) Performing minimization step: 3893. Total energy = 1813.4051 kcal/mol (1812.4976 without restraints) Performing minimization step: 3894. Total energy = 1813.3263 kcal/mol (1812.4186 without restraints) Performing minimization step: 3895. Total energy = 1813.2479 kcal/mol (1812.3401 without restraints) Performing minimization step: 3896. Total energy = 1813.1690 kcal/mol (1812.2610 without restraints) Performing minimization step: 3897. Total energy = 1813.0902 kcal/mol (1812.1821 without restraints) Performing minimization step: 3898. Total energy = 1813.0112 kcal/mol (1812.1030 without restraints) Performing minimization step: 3899. Total energy = 1812.9327 kcal/mol (1812.0243 without restraints) Performing minimization step: 3900. Total energy = 1812.8543 kcal/mol (1811.9458 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 1812.7759 kcal/mol (1811.8672 without restraints) Performing minimization step: 3902. Total energy = 1812.6974 kcal/mol (1811.7886 without restraints) Performing minimization step: 3903. Total energy = 1812.6190 kcal/mol (1811.7099 without restraints) Performing minimization step: 3904. Total energy = 1812.5407 kcal/mol (1811.6316 without restraints) Performing minimization step: 3905. Total energy = 1812.4625 kcal/mol (1811.5533 without restraints) Performing minimization step: 3906. Total energy = 1812.3844 kcal/mol (1811.4750 without restraints) Performing minimization step: 3907. Total energy = 1812.3060 kcal/mol (1811.3965 without restraints) Performing minimization step: 3908. Total energy = 1812.2280 kcal/mol (1811.3183 without restraints) Performing minimization step: 3909. Total energy = 1812.1498 kcal/mol (1811.2400 without restraints) Performing minimization step: 3910. Total energy = 1812.0716 kcal/mol (1811.1616 without restraints) Performing minimization step: 3911. Total energy = 1811.9937 kcal/mol (1811.0838 without restraints) Performing minimization step: 3912. Total energy = 1811.9158 kcal/mol (1811.0055 without restraints) Performing minimization step: 3913. Total energy = 1811.8378 kcal/mol (1810.9274 without restraints) Performing minimization step: 3914. Total energy = 1811.7600 kcal/mol (1810.8495 without restraints) Performing minimization step: 3915. Total energy = 1811.6819 kcal/mol (1810.7712 without restraints) Performing minimization step: 3916. Total energy = 1811.6042 kcal/mol (1810.6934 without restraints) Performing minimization step: 3917. Total energy = 1811.5265 kcal/mol (1810.6156 without restraints) Performing minimization step: 3918. Total energy = 1811.4487 kcal/mol (1810.5375 without restraints) Performing minimization step: 3919. Total energy = 1811.3711 kcal/mol (1810.4598 without restraints) Performing minimization step: 3920. Total energy = 1811.2936 kcal/mol (1810.3821 without restraints) Performing minimization step: 3921. Total energy = 1811.2161 kcal/mol (1810.3046 without restraints) Performing minimization step: 3922. Total energy = 1811.1387 kcal/mol (1810.2270 without restraints) Performing minimization step: 3923. Total energy = 1811.0616 kcal/mol (1810.1498 without restraints) Performing minimization step: 3924. Total energy = 1810.9843 kcal/mol (1810.0723 without restraints) Performing minimization step: 3925. Total energy = 1810.9070 kcal/mol (1809.9949 without restraints) Performing minimization step: 3926. Total energy = 1810.8304 kcal/mol (1809.9182 without restraints) Performing minimization step: 3927. Total energy = 1810.7535 kcal/mol (1809.8412 without restraints) Performing minimization step: 3928. Total energy = 1810.6765 kcal/mol (1809.7639 without restraints) Performing minimization step: 3929. Total energy = 1810.5994 kcal/mol (1809.6866 without restraints) Performing minimization step: 3930. Total energy = 1810.5223 kcal/mol (1809.6094 without restraints) Performing minimization step: 3931. Total energy = 1810.4454 kcal/mol (1809.5324 without restraints) Performing minimization step: 3932. Total energy = 1810.3684 kcal/mol (1809.4552 without restraints) Performing minimization step: 3933. Total energy = 1810.2917 kcal/mol (1809.3783 without restraints) Performing minimization step: 3934. Total energy = 1810.2145 kcal/mol (1809.3010 without restraints) Performing minimization step: 3935. Total energy = 1810.1376 kcal/mol (1809.2239 without restraints) Performing minimization step: 3936. Total energy = 1810.0609 kcal/mol (1809.1471 without restraints) Performing minimization step: 3937. Total energy = 1809.9846 kcal/mol (1809.0706 without restraints) Performing minimization step: 3938. Total energy = 1809.9078 kcal/mol (1808.9937 without restraints) Performing minimization step: 3939. Total energy = 1809.8310 kcal/mol (1808.9167 without restraints) Performing minimization step: 3940. Total energy = 1809.7542 kcal/mol (1808.8398 without restraints) Performing minimization step: 3941. Total energy = 1809.6777 kcal/mol (1808.7632 without restraints) Performing minimization step: 3942. Total energy = 1809.6016 kcal/mol (1808.6869 without restraints) Performing minimization step: 3943. Total energy = 1809.5250 kcal/mol (1808.6102 without restraints) Performing minimization step: 3944. Total energy = 1809.4486 kcal/mol (1808.5337 without restraints) Performing minimization step: 3945. Total energy = 1809.3723 kcal/mol (1808.4573 without restraints) Performing minimization step: 3946. Total energy = 1809.2963 kcal/mol (1808.3810 without restraints) Performing minimization step: 3947. Total energy = 1809.2200 kcal/mol (1808.3046 without restraints) Performing minimization step: 3948. Total energy = 1809.1437 kcal/mol (1808.2281 without restraints) Performing minimization step: 3949. Total energy = 1809.0675 kcal/mol (1808.1519 without restraints) Performing minimization step: 3950. Total energy = 1808.9912 kcal/mol (1808.0753 without restraints) Performing minimization step: 3951. Total energy = 1808.9153 kcal/mol (1807.9993 without restraints) Performing minimization step: 3952. Total energy = 1808.8394 kcal/mol (1807.9233 without restraints) Performing minimization step: 3953. Total energy = 1808.7635 kcal/mol (1807.8472 without restraints) Performing minimization step: 3954. Total energy = 1808.6877 kcal/mol (1807.7712 without restraints) Performing minimization step: 3955. Total energy = 1808.6120 kcal/mol (1807.6955 without restraints) Performing minimization step: 3956. Total energy = 1808.5363 kcal/mol (1807.6196 without restraints) Performing minimization step: 3957. Total energy = 1808.4606 kcal/mol (1807.5438 without restraints) Performing minimization step: 3958. Total energy = 1808.3849 kcal/mol (1807.4679 without restraints) Performing minimization step: 3959. Total energy = 1808.3094 kcal/mol (1807.3922 without restraints) Performing minimization step: 3960. Total energy = 1808.2338 kcal/mol (1807.3164 without restraints) Performing minimization step: 3961. Total energy = 1808.1581 kcal/mol (1807.2406 without restraints) Performing minimization step: 3962. Total energy = 1808.0825 kcal/mol (1807.1649 without restraints) Performing minimization step: 3963. Total energy = 1808.0070 kcal/mol (1807.0892 without restraints) Performing minimization step: 3964. Total energy = 1807.9315 kcal/mol (1807.0135 without restraints) Performing minimization step: 3965. Total energy = 1807.8563 kcal/mol (1806.9383 without restraints) Performing minimization step: 3966. Total energy = 1807.7805 kcal/mol (1806.8623 without restraints) Performing minimization step: 3967. Total energy = 1807.7054 kcal/mol (1806.7870 without restraints) Performing minimization step: 3968. Total energy = 1807.6301 kcal/mol (1806.7116 without restraints) Performing minimization step: 3969. Total energy = 1807.5550 kcal/mol (1806.6364 without restraints) Performing minimization step: 3970. Total energy = 1807.4798 kcal/mol (1806.5610 without restraints) Performing minimization step: 3971. Total energy = 1807.4049 kcal/mol (1806.4859 without restraints) Performing minimization step: 3972. Total energy = 1807.3297 kcal/mol (1806.4106 without restraints) Performing minimization step: 3973. Total energy = 1807.2549 kcal/mol (1806.3356 without restraints) Performing minimization step: 3974. Total energy = 1807.1802 kcal/mol (1806.2609 without restraints) Performing minimization step: 3975. Total energy = 1807.1055 kcal/mol (1806.1859 without restraints) Performing minimization step: 3976. Total energy = 1807.0305 kcal/mol (1806.1106 without restraints) Performing minimization step: 3977. Total energy = 1806.9556 kcal/mol (1806.0358 without restraints) Performing minimization step: 3978. Total energy = 1806.8805 kcal/mol (1805.9605 without restraints) Performing minimization step: 3979. Total energy = 1806.8055 kcal/mol (1805.8853 without restraints) Performing minimization step: 3980. Total energy = 1806.7308 kcal/mol (1805.8104 without restraints) Performing minimization step: 3981. Total energy = 1806.6563 kcal/mol (1805.7358 without restraints) Performing minimization step: 3982. Total energy = 1806.5821 kcal/mol (1805.6617 without restraints) Performing minimization step: 3983. Total energy = 1806.5077 kcal/mol (1805.5869 without restraints) Performing minimization step: 3984. Total energy = 1806.4331 kcal/mol (1805.5122 without restraints) Performing minimization step: 3985. Total energy = 1806.3586 kcal/mol (1805.4375 without restraints) Performing minimization step: 3986. Total energy = 1806.2842 kcal/mol (1805.3629 without restraints) Performing minimization step: 3987. Total energy = 1806.2101 kcal/mol (1805.2888 without restraints) Performing minimization step: 3988. Total energy = 1806.1358 kcal/mol (1805.2143 without restraints) Performing minimization step: 3989. Total energy = 1806.0618 kcal/mol (1805.1402 without restraints) Performing minimization step: 3990. Total energy = 1805.9881 kcal/mol (1805.0662 without restraints) Performing minimization step: 3991. Total energy = 1805.9141 kcal/mol (1804.9921 without restraints) Performing minimization step: 3992. Total energy = 1805.8398 kcal/mol (1804.9176 without restraints) Performing minimization step: 3993. Total energy = 1805.7656 kcal/mol (1804.8433 without restraints) Performing minimization step: 3994. Total energy = 1805.6916 kcal/mol (1804.7693 without restraints) Performing minimization step: 3995. Total energy = 1805.6177 kcal/mol (1804.6952 without restraints) Performing minimization step: 3996. Total energy = 1805.5443 kcal/mol (1804.6216 without restraints) Performing minimization step: 3997. Total energy = 1805.4706 kcal/mol (1804.5478 without restraints) Performing minimization step: 3998. Total energy = 1805.3967 kcal/mol (1804.4737 without restraints) Performing minimization step: 3999. Total energy = 1805.3231 kcal/mol (1804.3999 without restraints) Performing minimization step: 4000. Total energy = 1805.2493 kcal/mol (1804.3259 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 1805.1755 kcal/mol (1804.2520 without restraints) Performing minimization step: 4002. Total energy = 1805.1022 kcal/mol (1804.1786 without restraints) Performing minimization step: 4003. Total energy = 1805.0286 kcal/mol (1804.1049 without restraints) Performing minimization step: 4004. Total energy = 1804.9553 kcal/mol (1804.0314 without restraints) Performing minimization step: 4005. Total energy = 1804.8817 kcal/mol (1803.9576 without restraints) Performing minimization step: 4006. Total energy = 1804.8082 kcal/mol (1803.8840 without restraints) Performing minimization step: 4007. Total energy = 1804.7349 kcal/mol (1803.8106 without restraints) Performing minimization step: 4008. Total energy = 1804.6617 kcal/mol (1803.7372 without restraints) Performing minimization step: 4009. Total energy = 1804.5884 kcal/mol (1803.6637 without restraints) Performing minimization step: 4010. Total energy = 1804.5151 kcal/mol (1803.5903 without restraints) Performing minimization step: 4011. Total energy = 1804.4418 kcal/mol (1803.5168 without restraints) Performing minimization step: 4012. Total energy = 1804.3690 kcal/mol (1803.4439 without restraints) Performing minimization step: 4013. Total energy = 1804.2956 kcal/mol (1803.3703 without restraints) Performing minimization step: 4014. Total energy = 1804.2223 kcal/mol (1803.2968 without restraints) Performing minimization step: 4015. Total energy = 1804.1491 kcal/mol (1803.2236 without restraints) Performing minimization step: 4016. Total energy = 1804.0763 kcal/mol (1803.1506 without restraints) Performing minimization step: 4017. Total energy = 1804.0035 kcal/mol (1803.0776 without restraints) Performing minimization step: 4018. Total energy = 1803.9308 kcal/mol (1803.0049 without restraints) Performing minimization step: 4019. Total energy = 1803.8581 kcal/mol (1802.9319 without restraints) Performing minimization step: 4020. Total energy = 1803.7854 kcal/mol (1802.8591 without restraints) Performing minimization step: 4021. Total energy = 1803.7132 kcal/mol (1802.7867 without restraints) Performing minimization step: 4022. Total energy = 1803.6404 kcal/mol (1802.7138 without restraints) Performing minimization step: 4023. Total energy = 1803.5675 kcal/mol (1802.6407 without restraints) Performing minimization step: 4024. Total energy = 1803.4950 kcal/mol (1802.5680 without restraints) Performing minimization step: 4025. Total energy = 1803.4224 kcal/mol (1802.4953 without restraints) Performing minimization step: 4026. Total energy = 1803.3497 kcal/mol (1802.4226 without restraints) Performing minimization step: 4027. Total energy = 1803.2778 kcal/mol (1802.3505 without restraints) Performing minimization step: 4028. Total energy = 1803.2054 kcal/mol (1802.2778 without restraints) Performing minimization step: 4029. Total energy = 1803.1329 kcal/mol (1802.2052 without restraints) Performing minimization step: 4030. Total energy = 1803.0606 kcal/mol (1802.1329 without restraints) Performing minimization step: 4031. Total energy = 1802.9884 kcal/mol (1802.0604 without restraints) Performing minimization step: 4032. Total energy = 1802.9166 kcal/mol (1801.9885 without restraints) Performing minimization step: 4033. Total energy = 1802.8443 kcal/mol (1801.9160 without restraints) Performing minimization step: 4034. Total energy = 1802.7723 kcal/mol (1801.8438 without restraints) Performing minimization step: 4035. Total energy = 1802.7002 kcal/mol (1801.7716 without restraints) Performing minimization step: 4036. Total energy = 1802.6280 kcal/mol (1801.6993 without restraints) Performing minimization step: 4037. Total energy = 1802.5559 kcal/mol (1801.6270 without restraints) Performing minimization step: 4038. Total energy = 1802.4839 kcal/mol (1801.5548 without restraints) Performing minimization step: 4039. Total energy = 1802.4122 kcal/mol (1801.4830 without restraints) Performing minimization step: 4040. Total energy = 1802.3403 kcal/mol (1801.4111 without restraints) Performing minimization step: 4041. Total energy = 1802.2685 kcal/mol (1801.3391 without restraints) Performing minimization step: 4042. Total energy = 1802.1967 kcal/mol (1801.2670 without restraints) Performing minimization step: 4043. Total energy = 1802.1248 kcal/mol (1801.1950 without restraints) Performing minimization step: 4044. Total energy = 1802.0531 kcal/mol (1801.1231 without restraints) Performing minimization step: 4045. Total energy = 1801.9813 kcal/mol (1801.0512 without restraints) Performing minimization step: 4046. Total energy = 1801.9097 kcal/mol (1800.9796 without restraints) Performing minimization step: 4047. Total energy = 1801.8381 kcal/mol (1800.9077 without restraints) Performing minimization step: 4048. Total energy = 1801.7665 kcal/mol (1800.8360 without restraints) Performing minimization step: 4049. Total energy = 1801.6953 kcal/mol (1800.7647 without restraints) Performing minimization step: 4050. Total energy = 1801.6238 kcal/mol (1800.6929 without restraints) Performing minimization step: 4051. Total energy = 1801.5522 kcal/mol (1800.6211 without restraints) Performing minimization step: 4052. Total energy = 1801.4809 kcal/mol (1800.5498 without restraints) Performing minimization step: 4053. Total energy = 1801.4095 kcal/mol (1800.4782 without restraints) Performing minimization step: 4054. Total energy = 1801.3384 kcal/mol (1800.4069 without restraints) Performing minimization step: 4055. Total energy = 1801.2670 kcal/mol (1800.3353 without restraints) Performing minimization step: 4056. Total energy = 1801.1957 kcal/mol (1800.2639 without restraints) Performing minimization step: 4057. Total energy = 1801.1245 kcal/mol (1800.1926 without restraints) Performing minimization step: 4058. Total energy = 1801.0536 kcal/mol (1800.1215 without restraints) Performing minimization step: 4059. Total energy = 1800.9823 kcal/mol (1800.0501 without restraints) Performing minimization step: 4060. Total energy = 1800.9120 kcal/mol (1799.9796 without restraints) Performing minimization step: 4061. Total energy = 1800.8409 kcal/mol (1799.9084 without restraints) Performing minimization step: 4062. Total energy = 1800.7699 kcal/mol (1799.8372 without restraints) Performing minimization step: 4063. Total energy = 1800.6991 kcal/mol (1799.7663 without restraints) Performing minimization step: 4064. Total energy = 1800.6282 kcal/mol (1799.6952 without restraints) Performing minimization step: 4065. Total energy = 1800.5574 kcal/mol (1799.6243 without restraints) Performing minimization step: 4066. Total energy = 1800.4866 kcal/mol (1799.5533 without restraints) Performing minimization step: 4067. Total energy = 1800.4162 kcal/mol (1799.4829 without restraints) Performing minimization step: 4068. Total energy = 1800.3456 kcal/mol (1799.4120 without restraints) Performing minimization step: 4069. Total energy = 1800.2753 kcal/mol (1799.3415 without restraints) Performing minimization step: 4070. Total energy = 1800.2047 kcal/mol (1799.2708 without restraints) Performing minimization step: 4071. Total energy = 1800.1344 kcal/mol (1799.2003 without restraints) Performing minimization step: 4072. Total energy = 1800.0640 kcal/mol (1799.1298 without restraints) Performing minimization step: 4073. Total energy = 1799.9935 kcal/mol (1799.0591 without restraints) Performing minimization step: 4074. Total energy = 1799.9230 kcal/mol (1798.9885 without restraints) Performing minimization step: 4075. Total energy = 1799.8528 kcal/mol (1798.9183 without restraints) Performing minimization step: 4076. Total energy = 1799.7827 kcal/mol (1798.8480 without restraints) Performing minimization step: 4077. Total energy = 1799.7127 kcal/mol (1798.7778 without restraints) Performing minimization step: 4078. Total energy = 1799.6427 kcal/mol (1798.7076 without restraints) Performing minimization step: 4079. Total energy = 1799.5727 kcal/mol (1798.6374 without restraints) Performing minimization step: 4080. Total energy = 1799.5027 kcal/mol (1798.5673 without restraints) Performing minimization step: 4081. Total energy = 1799.4327 kcal/mol (1798.4970 without restraints) Performing minimization step: 4082. Total energy = 1799.3623 kcal/mol (1798.4265 without restraints) Performing minimization step: 4083. Total energy = 1799.2922 kcal/mol (1798.3563 without restraints) Performing minimization step: 4084. Total energy = 1799.2224 kcal/mol (1798.2865 without restraints) Performing minimization step: 4085. Total energy = 1799.1526 kcal/mol (1798.2164 without restraints) Performing minimization step: 4086. Total energy = 1799.0829 kcal/mol (1798.1465 without restraints) Performing minimization step: 4087. Total energy = 1799.0130 kcal/mol (1798.0765 without restraints) Performing minimization step: 4088. Total energy = 1798.9433 kcal/mol (1798.0066 without restraints) Performing minimization step: 4089. Total energy = 1798.8737 kcal/mol (1797.9370 without restraints) Performing minimization step: 4090. Total energy = 1798.8041 kcal/mol (1797.8672 without restraints) Performing minimization step: 4091. Total energy = 1798.7345 kcal/mol (1797.7975 without restraints) Performing minimization step: 4092. Total energy = 1798.6649 kcal/mol (1797.7276 without restraints) Performing minimization step: 4093. Total energy = 1798.5953 kcal/mol (1797.6579 without restraints) Performing minimization step: 4094. Total energy = 1798.5257 kcal/mol (1797.5881 without restraints) Performing minimization step: 4095. Total energy = 1798.4561 kcal/mol (1797.5184 without restraints) Performing minimization step: 4096. Total energy = 1798.3866 kcal/mol (1797.4487 without restraints) Performing minimization step: 4097. Total energy = 1798.3171 kcal/mol (1797.3791 without restraints) Performing minimization step: 4098. Total energy = 1798.2477 kcal/mol (1797.3095 without restraints) Performing minimization step: 4099. Total energy = 1798.1784 kcal/mol (1797.2401 without restraints) Performing minimization step: 4100. Total energy = 1798.1091 kcal/mol (1797.1706 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 1798.0400 kcal/mol (1797.1013 without restraints) Performing minimization step: 4102. Total energy = 1797.9713 kcal/mol (1797.0326 without restraints) Performing minimization step: 4103. Total energy = 1797.9023 kcal/mol (1796.9634 without restraints) Performing minimization step: 4104. Total energy = 1797.8332 kcal/mol (1796.8941 without restraints) Performing minimization step: 4105. Total energy = 1797.7647 kcal/mol (1796.8255 without restraints) Performing minimization step: 4106. Total energy = 1797.6958 kcal/mol (1796.7564 without restraints) Performing minimization step: 4107. Total energy = 1797.6271 kcal/mol (1796.6875 without restraints) Performing minimization step: 4108. Total energy = 1797.5580 kcal/mol (1796.6183 without restraints) Performing minimization step: 4109. Total energy = 1797.4891 kcal/mol (1796.5493 without restraints) Performing minimization step: 4110. Total energy = 1797.4202 kcal/mol (1796.4802 without restraints) Performing minimization step: 4111. Total energy = 1797.3513 kcal/mol (1796.4112 without restraints) Performing minimization step: 4112. Total energy = 1797.2825 kcal/mol (1796.3421 without restraints) Performing minimization step: 4113. Total energy = 1797.2137 kcal/mol (1796.2732 without restraints) Performing minimization step: 4114. Total energy = 1797.1449 kcal/mol (1796.2043 without restraints) Performing minimization step: 4115. Total energy = 1797.0767 kcal/mol (1796.1360 without restraints) Performing minimization step: 4116. Total energy = 1797.0081 kcal/mol (1796.0672 without restraints) Performing minimization step: 4117. Total energy = 1796.9397 kcal/mol (1795.9986 without restraints) Performing minimization step: 4118. Total energy = 1796.8713 kcal/mol (1795.9301 without restraints) Performing minimization step: 4119. Total energy = 1796.8029 kcal/mol (1795.8615 without restraints) Performing minimization step: 4120. Total energy = 1796.7344 kcal/mol (1795.7928 without restraints) Performing minimization step: 4121. Total energy = 1796.6660 kcal/mol (1795.7243 without restraints) Performing minimization step: 4122. Total energy = 1796.5974 kcal/mol (1795.6555 without restraints) Performing minimization step: 4123. Total energy = 1796.5297 kcal/mol (1795.5878 without restraints) Performing minimization step: 4124. Total energy = 1796.4614 kcal/mol (1795.5192 without restraints) Performing minimization step: 4125. Total energy = 1796.3931 kcal/mol (1795.4508 without restraints) Performing minimization step: 4126. Total energy = 1796.3248 kcal/mol (1795.3824 without restraints) Performing minimization step: 4127. Total energy = 1796.2564 kcal/mol (1795.3136 without restraints) Performing minimization step: 4128. Total energy = 1796.1880 kcal/mol (1795.2452 without restraints) Performing minimization step: 4129. Total energy = 1796.1198 kcal/mol (1795.1767 without restraints) Performing minimization step: 4130. Total energy = 1796.0516 kcal/mol (1795.1085 without restraints) Performing minimization step: 4131. Total energy = 1795.9835 kcal/mol (1795.0403 without restraints) Performing minimization step: 4132. Total energy = 1795.9159 kcal/mol (1794.9724 without restraints) Performing minimization step: 4133. Total energy = 1795.8480 kcal/mol (1794.9045 without restraints) Performing minimization step: 4134. Total energy = 1795.7801 kcal/mol (1794.8364 without restraints) Performing minimization step: 4135. Total energy = 1795.7123 kcal/mol (1794.7685 without restraints) Performing minimization step: 4136. Total energy = 1795.6445 kcal/mol (1794.7005 without restraints) Performing minimization step: 4137. Total energy = 1795.5767 kcal/mol (1794.6326 without restraints) Performing minimization step: 4138. Total energy = 1795.5089 kcal/mol (1794.5646 without restraints) Performing minimization step: 4139. Total energy = 1795.4412 kcal/mol (1794.4967 without restraints) Performing minimization step: 4140. Total energy = 1795.3735 kcal/mol (1794.4289 without restraints) Performing minimization step: 4141. Total energy = 1795.3059 kcal/mol (1794.3612 without restraints) Performing minimization step: 4142. Total energy = 1795.2387 kcal/mol (1794.2939 without restraints) Performing minimization step: 4143. Total energy = 1795.1713 kcal/mol (1794.2262 without restraints) Performing minimization step: 4144. Total energy = 1795.1041 kcal/mol (1794.1589 without restraints) Performing minimization step: 4145. Total energy = 1795.0364 kcal/mol (1794.0910 without restraints) Performing minimization step: 4146. Total energy = 1794.9692 kcal/mol (1794.0236 without restraints) Performing minimization step: 4147. Total energy = 1794.9021 kcal/mol (1793.9565 without restraints) Performing minimization step: 4148. Total energy = 1794.8348 kcal/mol (1793.8890 without restraints) Performing minimization step: 4149. Total energy = 1794.7676 kcal/mol (1793.8215 without restraints) Performing minimization step: 4150. Total energy = 1794.7004 kcal/mol (1793.7543 without restraints) Performing minimization step: 4151. Total energy = 1794.6332 kcal/mol (1793.6869 without restraints) Performing minimization step: 4152. Total energy = 1794.5662 kcal/mol (1793.6198 without restraints) Performing minimization step: 4153. Total energy = 1794.4990 kcal/mol (1793.5524 without restraints) Performing minimization step: 4154. Total energy = 1794.4319 kcal/mol (1793.4851 without restraints) Performing minimization step: 4155. Total energy = 1794.3648 kcal/mol (1793.4179 without restraints) Performing minimization step: 4156. Total energy = 1794.2978 kcal/mol (1793.3507 without restraints) Performing minimization step: 4157. Total energy = 1794.2306 kcal/mol (1793.2835 without restraints) Performing minimization step: 4158. Total energy = 1794.1640 kcal/mol (1793.2167 without restraints) Performing minimization step: 4159. Total energy = 1794.0976 kcal/mol (1793.1500 without restraints) Performing minimization step: 4160. Total energy = 1794.0310 kcal/mol (1793.0834 without restraints) Performing minimization step: 4161. Total energy = 1793.9640 kcal/mol (1793.0161 without restraints) Performing minimization step: 4162. Total energy = 1793.8972 kcal/mol (1792.9492 without restraints) Performing minimization step: 4163. Total energy = 1793.8305 kcal/mol (1792.8824 without restraints) Performing minimization step: 4164. Total energy = 1793.7639 kcal/mol (1792.8156 without restraints) Performing minimization step: 4165. Total energy = 1793.6972 kcal/mol (1792.7488 without restraints) Performing minimization step: 4166. Total energy = 1793.6306 kcal/mol (1792.6820 without restraints) Performing minimization step: 4167. Total energy = 1793.5644 kcal/mol (1792.6157 without restraints) Performing minimization step: 4168. Total energy = 1793.4979 kcal/mol (1792.5490 without restraints) Performing minimization step: 4169. Total energy = 1793.4314 kcal/mol (1792.4824 without restraints) Performing minimization step: 4170. Total energy = 1793.3649 kcal/mol (1792.4157 without restraints) Performing minimization step: 4171. Total energy = 1793.2987 kcal/mol (1792.3493 without restraints) Performing minimization step: 4172. Total energy = 1793.2323 kcal/mol (1792.2828 without restraints) Performing minimization step: 4173. Total energy = 1793.1660 kcal/mol (1792.2164 without restraints) Performing minimization step: 4174. Total energy = 1793.1002 kcal/mol (1792.1504 without restraints) Performing minimization step: 4175. Total energy = 1793.0341 kcal/mol (1792.0842 without restraints) Performing minimization step: 4176. Total energy = 1792.9680 kcal/mol (1792.0178 without restraints) Performing minimization step: 4177. Total energy = 1792.9021 kcal/mol (1791.9518 without restraints) Performing minimization step: 4178. Total energy = 1792.8364 kcal/mol (1791.8860 without restraints) Performing minimization step: 4179. Total energy = 1792.7703 kcal/mol (1791.8197 without restraints) Performing minimization step: 4180. Total energy = 1792.7042 kcal/mol (1791.7535 without restraints) Performing minimization step: 4181. Total energy = 1792.6385 kcal/mol (1791.6876 without restraints) Performing minimization step: 4182. Total energy = 1792.5725 kcal/mol (1791.6214 without restraints) Performing minimization step: 4183. Total energy = 1792.5065 kcal/mol (1791.5553 without restraints) Performing minimization step: 4184. Total energy = 1792.4409 kcal/mol (1791.4896 without restraints) Performing minimization step: 4185. Total energy = 1792.3753 kcal/mol (1791.4238 without restraints) Performing minimization step: 4186. Total energy = 1792.3094 kcal/mol (1791.3578 without restraints) Performing minimization step: 4187. Total energy = 1792.2438 kcal/mol (1791.2920 without restraints) Performing minimization step: 4188. Total energy = 1792.1783 kcal/mol (1791.2263 without restraints) Performing minimization step: 4189. Total energy = 1792.1126 kcal/mol (1791.1605 without restraints) Performing minimization step: 4190. Total energy = 1792.0470 kcal/mol (1791.0947 without restraints) Performing minimization step: 4191. Total energy = 1791.9813 kcal/mol (1791.0289 without restraints) Performing minimization step: 4192. Total energy = 1791.9157 kcal/mol (1790.9631 without restraints) Performing minimization step: 4193. Total energy = 1791.8501 kcal/mol (1790.8974 without restraints) Performing minimization step: 4194. Total energy = 1791.7846 kcal/mol (1790.8317 without restraints) Performing minimization step: 4195. Total energy = 1791.7191 kcal/mol (1790.7661 without restraints) Performing minimization step: 4196. Total energy = 1791.6537 kcal/mol (1790.7005 without restraints) Performing minimization step: 4197. Total energy = 1791.5884 kcal/mol (1790.6351 without restraints) Performing minimization step: 4198. Total energy = 1791.5229 kcal/mol (1790.5693 without restraints) Performing minimization step: 4199. Total energy = 1791.4577 kcal/mol (1790.5041 without restraints) Performing minimization step: 4200. Total energy = 1791.3925 kcal/mol (1790.4387 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 1791.3272 kcal/mol (1790.3733 without restraints) Performing minimization step: 4202. Total energy = 1791.2620 kcal/mol (1790.3079 without restraints) Performing minimization step: 4203. Total energy = 1791.1971 kcal/mol (1790.2428 without restraints) Performing minimization step: 4204. Total energy = 1791.1319 kcal/mol (1790.1775 without restraints) Performing minimization step: 4205. Total energy = 1791.0668 kcal/mol (1790.1122 without restraints) Performing minimization step: 4206. Total energy = 1791.0020 kcal/mol (1790.0472 without restraints) Performing minimization step: 4207. Total energy = 1790.9372 kcal/mol (1789.9823 without restraints) Performing minimization step: 4208. Total energy = 1790.8724 kcal/mol (1789.9173 without restraints) Performing minimization step: 4209. Total energy = 1790.8074 kcal/mol (1789.8522 without restraints) Performing minimization step: 4210. Total energy = 1790.7425 kcal/mol (1789.7870 without restraints) Performing minimization step: 4211. Total energy = 1790.6775 kcal/mol (1789.7220 without restraints) Performing minimization step: 4212. Total energy = 1790.6127 kcal/mol (1789.6571 without restraints) Performing minimization step: 4213. Total energy = 1790.5478 kcal/mol (1789.5921 without restraints) Performing minimization step: 4214. Total energy = 1790.4830 kcal/mol (1789.5269 without restraints) Performing minimization step: 4215. Total energy = 1790.4184 kcal/mol (1789.4622 without restraints) Performing minimization step: 4216. Total energy = 1790.3537 kcal/mol (1789.3974 without restraints) Performing minimization step: 4217. Total energy = 1790.2892 kcal/mol (1789.3328 without restraints) Performing minimization step: 4218. Total energy = 1790.2251 kcal/mol (1789.2685 without restraints) Performing minimization step: 4219. Total energy = 1790.1606 kcal/mol (1789.2040 without restraints) Performing minimization step: 4220. Total energy = 1790.0962 kcal/mol (1789.1393 without restraints) Performing minimization step: 4221. Total energy = 1790.0319 kcal/mol (1789.0748 without restraints) Performing minimization step: 4222. Total energy = 1789.9673 kcal/mol (1789.0101 without restraints) Performing minimization step: 4223. Total energy = 1789.9030 kcal/mol (1788.9456 without restraints) Performing minimization step: 4224. Total energy = 1789.8384 kcal/mol (1788.8808 without restraints) Performing minimization step: 4225. Total energy = 1789.7737 kcal/mol (1788.8160 without restraints) Performing minimization step: 4226. Total energy = 1789.7096 kcal/mol (1788.7520 without restraints) Performing minimization step: 4227. Total energy = 1789.6457 kcal/mol (1788.6877 without restraints) Performing minimization step: 4228. Total energy = 1789.5817 kcal/mol (1788.6237 without restraints) Performing minimization step: 4229. Total energy = 1789.5178 kcal/mol (1788.5595 without restraints) Performing minimization step: 4230. Total energy = 1789.4542 kcal/mol (1788.4958 without restraints) Performing minimization step: 4231. Total energy = 1789.3902 kcal/mol (1788.4316 without restraints) Performing minimization step: 4232. Total energy = 1789.3266 kcal/mol (1788.3678 without restraints) Performing minimization step: 4233. Total energy = 1789.2628 kcal/mol (1788.3039 without restraints) Performing minimization step: 4234. Total energy = 1789.1989 kcal/mol (1788.2399 without restraints) Performing minimization step: 4235. Total energy = 1789.1350 kcal/mol (1788.1758 without restraints) Performing minimization step: 4236. Total energy = 1789.0710 kcal/mol (1788.1117 without restraints) Performing minimization step: 4237. Total energy = 1789.0071 kcal/mol (1788.0475 without restraints) Performing minimization step: 4238. Total energy = 1788.9433 kcal/mol (1787.9837 without restraints) Performing minimization step: 4239. Total energy = 1788.8796 kcal/mol (1787.9198 without restraints) Performing minimization step: 4240. Total energy = 1788.8160 kcal/mol (1787.8560 without restraints) Performing minimization step: 4241. Total energy = 1788.7520 kcal/mol (1787.7919 without restraints) Performing minimization step: 4242. Total energy = 1788.6883 kcal/mol (1787.7281 without restraints) Performing minimization step: 4243. Total energy = 1788.6242 kcal/mol (1787.6638 without restraints) Performing minimization step: 4244. Total energy = 1788.5607 kcal/mol (1787.6002 without restraints) Performing minimization step: 4245. Total energy = 1788.4973 kcal/mol (1787.5365 without restraints) Performing minimization step: 4246. Total energy = 1788.4337 kcal/mol (1787.4728 without restraints) Performing minimization step: 4247. Total energy = 1788.3703 kcal/mol (1787.4092 without restraints) Performing minimization step: 4248. Total energy = 1788.3068 kcal/mol (1787.3456 without restraints) Performing minimization step: 4249. Total energy = 1788.2431 kcal/mol (1787.2817 without restraints) Performing minimization step: 4250. Total energy = 1788.1797 kcal/mol (1787.2181 without restraints) Performing minimization step: 4251. Total energy = 1788.1166 kcal/mol (1787.1551 without restraints) Performing minimization step: 4252. Total energy = 1788.0534 kcal/mol (1787.0916 without restraints) Performing minimization step: 4253. Total energy = 1787.9901 kcal/mol (1787.0282 without restraints) Performing minimization step: 4254. Total energy = 1787.9271 kcal/mol (1786.9650 without restraints) Performing minimization step: 4255. Total energy = 1787.8641 kcal/mol (1786.9018 without restraints) Performing minimization step: 4256. Total energy = 1787.8008 kcal/mol (1786.8384 without restraints) Performing minimization step: 4257. Total energy = 1787.7377 kcal/mol (1786.7751 without restraints) Performing minimization step: 4258. Total energy = 1787.6746 kcal/mol (1786.7118 without restraints) Performing minimization step: 4259. Total energy = 1787.6118 kcal/mol (1786.6489 without restraints) Performing minimization step: 4260. Total energy = 1787.5488 kcal/mol (1786.5857 without restraints) Performing minimization step: 4261. Total energy = 1787.4858 kcal/mol (1786.5226 without restraints) Performing minimization step: 4262. Total energy = 1787.4229 kcal/mol (1786.4595 without restraints) Performing minimization step: 4263. Total energy = 1787.3600 kcal/mol (1786.3965 without restraints) Performing minimization step: 4264. Total energy = 1787.2977 kcal/mol (1786.3340 without restraints) Performing minimization step: 4265. Total energy = 1787.2348 kcal/mol (1786.2710 without restraints) Performing minimization step: 4266. Total energy = 1787.1718 kcal/mol (1786.2078 without restraints) Performing minimization step: 4267. Total energy = 1787.1090 kcal/mol (1786.1449 without restraints) Performing minimization step: 4268. Total energy = 1787.0464 kcal/mol (1786.0822 without restraints) Performing minimization step: 4269. Total energy = 1786.9838 kcal/mol (1786.0195 without restraints) Performing minimization step: 4270. Total energy = 1786.9214 kcal/mol (1785.9568 without restraints) Performing minimization step: 4271. Total energy = 1786.8589 kcal/mol (1785.8943 without restraints) Performing minimization step: 4272. Total energy = 1786.7964 kcal/mol (1785.8315 without restraints) Performing minimization step: 4273. Total energy = 1786.7338 kcal/mol (1785.7688 without restraints) Performing minimization step: 4274. Total energy = 1786.6717 kcal/mol (1785.7065 without restraints) Performing minimization step: 4275. Total energy = 1786.6093 kcal/mol (1785.6440 without restraints) Performing minimization step: 4276. Total energy = 1786.5470 kcal/mol (1785.5815 without restraints) Performing minimization step: 4277. Total energy = 1786.4849 kcal/mol (1785.5193 without restraints) Performing minimization step: 4278. Total energy = 1786.4230 kcal/mol (1785.4570 without restraints) Performing minimization step: 4279. Total energy = 1786.3607 kcal/mol (1785.3948 without restraints) Performing minimization step: 4280. Total energy = 1786.2984 kcal/mol (1785.3323 without restraints) Performing minimization step: 4281. Total energy = 1786.2361 kcal/mol (1785.2699 without restraints) Performing minimization step: 4282. Total energy = 1786.1739 kcal/mol (1785.2075 without restraints) Performing minimization step: 4283. Total energy = 1786.1114 kcal/mol (1785.1449 without restraints) Performing minimization step: 4284. Total energy = 1786.0493 kcal/mol (1785.0826 without restraints) Performing minimization step: 4285. Total energy = 1785.9872 kcal/mol (1785.0203 without restraints) Performing minimization step: 4286. Total energy = 1785.9252 kcal/mol (1784.9583 without restraints) Performing minimization step: 4287. Total energy = 1785.8632 kcal/mol (1784.8959 without restraints) Performing minimization step: 4288. Total energy = 1785.8015 kcal/mol (1784.8341 without restraints) Performing minimization step: 4289. Total energy = 1785.7395 kcal/mol (1784.7720 without restraints) Performing minimization step: 4290. Total energy = 1785.6775 kcal/mol (1784.7099 without restraints) Performing minimization step: 4291. Total energy = 1785.6156 kcal/mol (1784.6478 without restraints) Performing minimization step: 4292. Total energy = 1785.5538 kcal/mol (1784.5859 without restraints) Performing minimization step: 4293. Total energy = 1785.4920 kcal/mol (1784.5239 without restraints) Performing minimization step: 4294. Total energy = 1785.4302 kcal/mol (1784.4620 without restraints) Performing minimization step: 4295. Total energy = 1785.3687 kcal/mol (1784.4003 without restraints) Performing minimization step: 4296. Total energy = 1785.3071 kcal/mol (1784.3386 without restraints) Performing minimization step: 4297. Total energy = 1785.2454 kcal/mol (1784.2767 without restraints) Performing minimization step: 4298. Total energy = 1785.1837 kcal/mol (1784.2148 without restraints) Performing minimization step: 4299. Total energy = 1785.1221 kcal/mol (1784.1530 without restraints) Performing minimization step: 4300. Total energy = 1785.0605 kcal/mol (1784.0913 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 1784.9991 kcal/mol (1784.0298 without restraints) Performing minimization step: 4302. Total energy = 1784.9382 kcal/mol (1783.9687 without restraints) Performing minimization step: 4303. Total energy = 1784.8767 kcal/mol (1783.9071 without restraints) Performing minimization step: 4304. Total energy = 1784.8152 kcal/mol (1783.8454 without restraints) Performing minimization step: 4305. Total energy = 1784.7538 kcal/mol (1783.7839 without restraints) Performing minimization step: 4306. Total energy = 1784.6932 kcal/mol (1783.7231 without restraints) Performing minimization step: 4307. Total energy = 1784.6319 kcal/mol (1783.6618 without restraints) Performing minimization step: 4308. Total energy = 1784.5705 kcal/mol (1783.6001 without restraints) Performing minimization step: 4309. Total energy = 1784.5094 kcal/mol (1783.5387 without restraints) Performing minimization step: 4310. Total energy = 1784.4483 kcal/mol (1783.4775 without restraints) Performing minimization step: 4311. Total energy = 1784.3875 kcal/mol (1783.4168 without restraints) Performing minimization step: 4312. Total energy = 1784.3267 kcal/mol (1783.3557 without restraints) Performing minimization step: 4313. Total energy = 1784.2657 kcal/mol (1783.2947 without restraints) Performing minimization step: 4314. Total energy = 1784.2046 kcal/mol (1783.2332 without restraints) Performing minimization step: 4315. Total energy = 1784.1435 kcal/mol (1783.1720 without restraints) Performing minimization step: 4316. Total energy = 1784.0824 kcal/mol (1783.1108 without restraints) Performing minimization step: 4317. Total energy = 1784.0218 kcal/mol (1783.0500 without restraints) Performing minimization step: 4318. Total energy = 1783.9609 kcal/mol (1782.9891 without restraints) Performing minimization step: 4319. Total energy = 1783.9001 kcal/mol (1782.9281 without restraints) Performing minimization step: 4320. Total energy = 1783.8395 kcal/mol (1782.8673 without restraints) Performing minimization step: 4321. Total energy = 1783.7784 kcal/mol (1782.8060 without restraints) Performing minimization step: 4322. Total energy = 1783.7175 kcal/mol (1782.7450 without restraints) Performing minimization step: 4323. Total energy = 1783.6567 kcal/mol (1782.6840 without restraints) Performing minimization step: 4324. Total energy = 1783.5960 kcal/mol (1782.6231 without restraints) Performing minimization step: 4325. Total energy = 1783.5355 kcal/mol (1782.5625 without restraints) Performing minimization step: 4326. Total energy = 1783.4753 kcal/mol (1782.5021 without restraints) Performing minimization step: 4327. Total energy = 1783.4153 kcal/mol (1782.4421 without restraints) Performing minimization step: 4328. Total energy = 1783.3547 kcal/mol (1782.3813 without restraints) Performing minimization step: 4329. Total energy = 1783.2941 kcal/mol (1782.3205 without restraints) Performing minimization step: 4330. Total energy = 1783.2336 kcal/mol (1782.2598 without restraints) Performing minimization step: 4331. Total energy = 1783.1730 kcal/mol (1782.1991 without restraints) Performing minimization step: 4332. Total energy = 1783.1125 kcal/mol (1782.1384 without restraints) Performing minimization step: 4333. Total energy = 1783.0522 kcal/mol (1782.0781 without restraints) Performing minimization step: 4334. Total energy = 1782.9921 kcal/mol (1782.0178 without restraints) Performing minimization step: 4335. Total energy = 1782.9318 kcal/mol (1781.9572 without restraints) Performing minimization step: 4336. Total energy = 1782.8716 kcal/mol (1781.8969 without restraints) Performing minimization step: 4337. Total energy = 1782.8113 kcal/mol (1781.8365 without restraints) Performing minimization step: 4338. Total energy = 1782.7511 kcal/mol (1781.7761 without restraints) Performing minimization step: 4339. Total energy = 1782.6908 kcal/mol (1781.7157 without restraints) Performing minimization step: 4340. Total energy = 1782.6309 kcal/mol (1781.6555 without restraints) Performing minimization step: 4341. Total energy = 1782.5707 kcal/mol (1781.5952 without restraints) Performing minimization step: 4342. Total energy = 1782.5105 kcal/mol (1781.5349 without restraints) Performing minimization step: 4343. Total energy = 1782.4504 kcal/mol (1781.4747 without restraints) Performing minimization step: 4344. Total energy = 1782.3906 kcal/mol (1781.4147 without restraints) Performing minimization step: 4345. Total energy = 1782.3305 kcal/mol (1781.3545 without restraints) Performing minimization step: 4346. Total energy = 1782.2703 kcal/mol (1781.2941 without restraints) Performing minimization step: 4347. Total energy = 1782.2103 kcal/mol (1781.2339 without restraints) Performing minimization step: 4348. Total energy = 1782.1506 kcal/mol (1781.1741 without restraints) Performing minimization step: 4349. Total energy = 1782.0909 kcal/mol (1781.1143 without restraints) Performing minimization step: 4350. Total energy = 1782.0310 kcal/mol (1781.0542 without restraints) Performing minimization step: 4351. Total energy = 1781.9711 kcal/mol (1780.9942 without restraints) Performing minimization step: 4352. Total energy = 1781.9113 kcal/mol (1780.9342 without restraints) Performing minimization step: 4353. Total energy = 1781.8525 kcal/mol (1780.8752 without restraints) Performing minimization step: 4354. Total energy = 1781.7927 kcal/mol (1780.8153 without restraints) Performing minimization step: 4355. Total energy = 1781.7330 kcal/mol (1780.7554 without restraints) Performing minimization step: 4356. Total energy = 1781.6733 kcal/mol (1780.6956 without restraints) Performing minimization step: 4357. Total energy = 1781.6135 kcal/mol (1780.6355 without restraints) Performing minimization step: 4358. Total energy = 1781.5538 kcal/mol (1780.5757 without restraints) Performing minimization step: 4359. Total energy = 1781.4944 kcal/mol (1780.5162 without restraints) Performing minimization step: 4360. Total energy = 1781.4349 kcal/mol (1780.4566 without restraints) Performing minimization step: 4361. Total energy = 1781.3756 kcal/mol (1780.3971 without restraints) Performing minimization step: 4362. Total energy = 1781.3163 kcal/mol (1780.3377 without restraints) Performing minimization step: 4363. Total energy = 1781.2570 kcal/mol (1780.2784 without restraints) Performing minimization step: 4364. Total energy = 1781.1979 kcal/mol (1780.2190 without restraints) Performing minimization step: 4365. Total energy = 1781.1386 kcal/mol (1780.1594 without restraints) Performing minimization step: 4366. Total energy = 1781.0794 kcal/mol (1780.1001 without restraints) Performing minimization step: 4367. Total energy = 1781.0205 kcal/mol (1780.0411 without restraints) Performing minimization step: 4368. Total energy = 1780.9613 kcal/mol (1779.9817 without restraints) Performing minimization step: 4369. Total energy = 1780.9022 kcal/mol (1779.9225 without restraints) Performing minimization step: 4370. Total energy = 1780.8432 kcal/mol (1779.8633 without restraints) Performing minimization step: 4371. Total energy = 1780.7843 kcal/mol (1779.8044 without restraints) Performing minimization step: 4372. Total energy = 1780.7253 kcal/mol (1779.7451 without restraints) Performing minimization step: 4373. Total energy = 1780.6663 kcal/mol (1779.6862 without restraints) Performing minimization step: 4374. Total energy = 1780.6076 kcal/mol (1779.6272 without restraints) Performing minimization step: 4375. Total energy = 1780.5483 kcal/mol (1779.5677 without restraints) Performing minimization step: 4376. Total energy = 1780.4894 kcal/mol (1779.5087 without restraints) Performing minimization step: 4377. Total energy = 1780.4304 kcal/mol (1779.4495 without restraints) Performing minimization step: 4378. Total energy = 1780.3715 kcal/mol (1779.3905 without restraints) Performing minimization step: 4379. Total energy = 1780.3127 kcal/mol (1779.3315 without restraints) Performing minimization step: 4380. Total energy = 1780.2538 kcal/mol (1779.2725 without restraints) Performing minimization step: 4381. Total energy = 1780.1952 kcal/mol (1779.2137 without restraints) Performing minimization step: 4382. Total energy = 1780.1364 kcal/mol (1779.1547 without restraints) Performing minimization step: 4383. Total energy = 1780.0776 kcal/mol (1779.0958 without restraints) Performing minimization step: 4384. Total energy = 1780.0189 kcal/mol (1779.0369 without restraints) Performing minimization step: 4385. Total energy = 1779.9602 kcal/mol (1778.9781 without restraints) Performing minimization step: 4386. Total energy = 1779.9017 kcal/mol (1778.9194 without restraints) Performing minimization step: 4387. Total energy = 1779.8432 kcal/mol (1778.8608 without restraints) Performing minimization step: 4388. Total energy = 1779.7846 kcal/mol (1778.8020 without restraints) Performing minimization step: 4389. Total energy = 1779.7264 kcal/mol (1778.7436 without restraints) Performing minimization step: 4390. Total energy = 1779.6679 kcal/mol (1778.6850 without restraints) Performing minimization step: 4391. Total energy = 1779.6094 kcal/mol (1778.6263 without restraints) Performing minimization step: 4392. Total energy = 1779.5509 kcal/mol (1778.5677 without restraints) Performing minimization step: 4393. Total energy = 1779.4926 kcal/mol (1778.5093 without restraints) Performing minimization step: 4394. Total energy = 1779.4342 kcal/mol (1778.4507 without restraints) Performing minimization step: 4395. Total energy = 1779.3756 kcal/mol (1778.3920 without restraints) Performing minimization step: 4396. Total energy = 1779.3174 kcal/mol (1778.3336 without restraints) Performing minimization step: 4397. Total energy = 1779.2593 kcal/mol (1778.2753 without restraints) Performing minimization step: 4398. Total energy = 1779.2012 kcal/mol (1778.2171 without restraints) Performing minimization step: 4399. Total energy = 1779.1431 kcal/mol (1778.1589 without restraints) Performing minimization step: 4400. Total energy = 1779.0852 kcal/mol (1778.1008 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 1779.0271 kcal/mol (1778.0425 without restraints) Performing minimization step: 4402. Total energy = 1778.9690 kcal/mol (1777.9843 without restraints) Performing minimization step: 4403. Total energy = 1778.9109 kcal/mol (1777.9261 without restraints) Performing minimization step: 4404. Total energy = 1778.8530 kcal/mol (1777.8680 without restraints) Performing minimization step: 4405. Total energy = 1778.7950 kcal/mol (1777.8098 without restraints) Performing minimization step: 4406. Total energy = 1778.7370 kcal/mol (1777.7518 without restraints) Performing minimization step: 4407. Total energy = 1778.6792 kcal/mol (1777.6937 without restraints) Performing minimization step: 4408. Total energy = 1778.6212 kcal/mol (1777.6356 without restraints) Performing minimization step: 4409. Total energy = 1778.5633 kcal/mol (1777.5776 without restraints) Performing minimization step: 4410. Total energy = 1778.5054 kcal/mol (1777.5194 without restraints) Performing minimization step: 4411. Total energy = 1778.4475 kcal/mol (1777.4614 without restraints) Performing minimization step: 4412. Total energy = 1778.3899 kcal/mol (1777.4037 without restraints) Performing minimization step: 4413. Total energy = 1778.3323 kcal/mol (1777.3459 without restraints) Performing minimization step: 4414. Total energy = 1778.2745 kcal/mol (1777.2880 without restraints) Performing minimization step: 4415. Total energy = 1778.2174 kcal/mol (1777.2308 without restraints) Performing minimization step: 4416. Total energy = 1778.1599 kcal/mol (1777.1731 without restraints) Performing minimization step: 4417. Total energy = 1778.1022 kcal/mol (1777.1152 without restraints) Performing minimization step: 4418. Total energy = 1778.0444 kcal/mol (1777.0573 without restraints) Performing minimization step: 4419. Total energy = 1777.9868 kcal/mol (1776.9995 without restraints) Performing minimization step: 4420. Total energy = 1777.9292 kcal/mol (1776.9418 without restraints) Performing minimization step: 4421. Total energy = 1777.8716 kcal/mol (1776.8840 without restraints) Performing minimization step: 4422. Total energy = 1777.8141 kcal/mol (1776.8264 without restraints) Performing minimization step: 4423. Total energy = 1777.7570 kcal/mol (1776.7692 without restraints) Performing minimization step: 4424. Total energy = 1777.7000 kcal/mol (1776.7119 without restraints) Performing minimization step: 4425. Total energy = 1777.6426 kcal/mol (1776.6544 without restraints) Performing minimization step: 4426. Total energy = 1777.5851 kcal/mol (1776.5968 without restraints) Performing minimization step: 4427. Total energy = 1777.5278 kcal/mol (1776.5393 without restraints) Performing minimization step: 4428. Total energy = 1777.4704 kcal/mol (1776.4818 without restraints) Performing minimization step: 4429. Total energy = 1777.4131 kcal/mol (1776.4243 without restraints) Performing minimization step: 4430. Total energy = 1777.3559 kcal/mol (1776.3670 without restraints) Performing minimization step: 4431. Total energy = 1777.2987 kcal/mol (1776.3096 without restraints) Performing minimization step: 4432. Total energy = 1777.2416 kcal/mol (1776.2525 without restraints) Performing minimization step: 4433. Total energy = 1777.1841 kcal/mol (1776.1948 without restraints) Performing minimization step: 4434. Total energy = 1777.1272 kcal/mol (1776.1377 without restraints) Performing minimization step: 4435. Total energy = 1777.0696 kcal/mol (1776.0799 without restraints) Performing minimization step: 4436. Total energy = 1777.0123 kcal/mol (1776.0225 without restraints) Performing minimization step: 4437. Total energy = 1776.9553 kcal/mol (1775.9653 without restraints) Performing minimization step: 4438. Total energy = 1776.8981 kcal/mol (1775.9080 without restraints) Performing minimization step: 4439. Total energy = 1776.8411 kcal/mol (1775.8508 without restraints) Performing minimization step: 4440. Total energy = 1776.7841 kcal/mol (1775.7937 without restraints) Performing minimization step: 4441. Total energy = 1776.7272 kcal/mol (1775.7366 without restraints) Performing minimization step: 4442. Total energy = 1776.6701 kcal/mol (1775.6794 without restraints) Performing minimization step: 4443. Total energy = 1776.6132 kcal/mol (1775.6224 without restraints) Performing minimization step: 4444. Total energy = 1776.5565 kcal/mol (1775.5657 without restraints) Performing minimization step: 4445. Total energy = 1776.5001 kcal/mol (1775.5089 without restraints) Performing minimization step: 4446. Total energy = 1776.4433 kcal/mol (1775.4520 without restraints) Performing minimization step: 4447. Total energy = 1776.3867 kcal/mol (1775.3955 without restraints) Performing minimization step: 4448. Total energy = 1776.3304 kcal/mol (1775.3388 without restraints) Performing minimization step: 4449. Total energy = 1776.2737 kcal/mol (1775.2819 without restraints) Performing minimization step: 4450. Total energy = 1776.2170 kcal/mol (1775.2251 without restraints) Performing minimization step: 4451. Total energy = 1776.1605 kcal/mol (1775.1686 without restraints) Performing minimization step: 4452. Total energy = 1776.1042 kcal/mol (1775.1120 without restraints) Performing minimization step: 4453. Total energy = 1776.0476 kcal/mol (1775.0553 without restraints) Performing minimization step: 4454. Total energy = 1775.9914 kcal/mol (1774.9991 without restraints) Performing minimization step: 4455. Total energy = 1775.9352 kcal/mol (1774.9426 without restraints) Performing minimization step: 4456. Total energy = 1775.8790 kcal/mol (1774.8862 without restraints) Performing minimization step: 4457. Total energy = 1775.8224 kcal/mol (1774.8294 without restraints) Performing minimization step: 4458. Total energy = 1775.7661 kcal/mol (1774.7731 without restraints) Performing minimization step: 4459. Total energy = 1775.7098 kcal/mol (1774.7165 without restraints) Performing minimization step: 4460. Total energy = 1775.6540 kcal/mol (1774.6608 without restraints) Performing minimization step: 4461. Total energy = 1775.5979 kcal/mol (1774.6043 without restraints) Performing minimization step: 4462. Total energy = 1775.5418 kcal/mol (1774.5481 without restraints) Performing minimization step: 4463. Total energy = 1775.4856 kcal/mol (1774.4917 without restraints) Performing minimization step: 4464. Total energy = 1775.4296 kcal/mol (1774.4355 without restraints) Performing minimization step: 4465. Total energy = 1775.3732 kcal/mol (1774.3791 without restraints) Performing minimization step: 4466. Total energy = 1775.3173 kcal/mol (1774.3230 without restraints) Performing minimization step: 4467. Total energy = 1775.2615 kcal/mol (1774.2671 without restraints) Performing minimization step: 4468. Total energy = 1775.2054 kcal/mol (1774.2108 without restraints) Performing minimization step: 4469. Total energy = 1775.1493 kcal/mol (1774.1546 without restraints) Performing minimization step: 4470. Total energy = 1775.0931 kcal/mol (1774.0983 without restraints) Performing minimization step: 4471. Total energy = 1775.0370 kcal/mol (1774.0421 without restraints) Performing minimization step: 4472. Total energy = 1774.9812 kcal/mol (1773.9860 without restraints) Performing minimization step: 4473. Total energy = 1774.9258 kcal/mol (1773.9305 without restraints) Performing minimization step: 4474. Total energy = 1774.8699 kcal/mol (1773.8744 without restraints) Performing minimization step: 4475. Total energy = 1774.8142 kcal/mol (1773.8186 without restraints) Performing minimization step: 4476. Total energy = 1774.7586 kcal/mol (1773.7630 without restraints) Performing minimization step: 4477. Total energy = 1774.7028 kcal/mol (1773.7068 without restraints) Performing minimization step: 4478. Total energy = 1774.6469 kcal/mol (1773.6508 without restraints) Performing minimization step: 4479. Total energy = 1774.5911 kcal/mol (1773.5949 without restraints) Performing minimization step: 4480. Total energy = 1774.5353 kcal/mol (1773.5390 without restraints) Performing minimization step: 4481. Total energy = 1774.4795 kcal/mol (1773.4830 without restraints) Performing minimization step: 4482. Total energy = 1774.4242 kcal/mol (1773.4276 without restraints) Performing minimization step: 4483. Total energy = 1774.3689 kcal/mol (1773.3721 without restraints) Performing minimization step: 4484. Total energy = 1774.3133 kcal/mol (1773.3163 without restraints) Performing minimization step: 4485. Total energy = 1774.2576 kcal/mol (1773.2606 without restraints) Performing minimization step: 4486. Total energy = 1774.2023 kcal/mol (1773.2053 without restraints) Performing minimization step: 4487. Total energy = 1774.1470 kcal/mol (1773.1496 without restraints) Performing minimization step: 4488. Total energy = 1774.0919 kcal/mol (1773.0944 without restraints) Performing minimization step: 4489. Total energy = 1774.0364 kcal/mol (1773.0387 without restraints) Performing minimization step: 4490. Total energy = 1773.9807 kcal/mol (1772.9829 without restraints) Performing minimization step: 4491. Total energy = 1773.9253 kcal/mol (1772.9273 without restraints) Performing minimization step: 4492. Total energy = 1773.8701 kcal/mol (1772.8720 without restraints) Performing minimization step: 4493. Total energy = 1773.8148 kcal/mol (1772.8165 without restraints) Performing minimization step: 4494. Total energy = 1773.7595 kcal/mol (1772.7612 without restraints) Performing minimization step: 4495. Total energy = 1773.7045 kcal/mol (1772.7060 without restraints) Performing minimization step: 4496. Total energy = 1773.6496 kcal/mol (1772.6510 without restraints) Performing minimization step: 4497. Total energy = 1773.5946 kcal/mol (1772.5958 without restraints) Performing minimization step: 4498. Total energy = 1773.5394 kcal/mol (1772.5404 without restraints) Performing minimization step: 4499. Total energy = 1773.4845 kcal/mol (1772.4856 without restraints) Performing minimization step: 4500. Total energy = 1773.4298 kcal/mol (1772.4305 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 1773.3749 kcal/mol (1772.3755 without restraints) Performing minimization step: 4502. Total energy = 1773.3201 kcal/mol (1772.3205 without restraints) Performing minimization step: 4503. Total energy = 1773.2649 kcal/mol (1772.2652 without restraints) Performing minimization step: 4504. Total energy = 1773.2099 kcal/mol (1772.2100 without restraints) Performing minimization step: 4505. Total energy = 1773.1550 kcal/mol (1772.1550 without restraints) Performing minimization step: 4506. Total energy = 1773.1000 kcal/mol (1772.0999 without restraints) Performing minimization step: 4507. Total energy = 1773.0451 kcal/mol (1772.0448 without restraints) Performing minimization step: 4508. Total energy = 1772.9903 kcal/mol (1771.9898 without restraints) Performing minimization step: 4509. Total energy = 1772.9353 kcal/mol (1771.9347 without restraints) Performing minimization step: 4510. Total energy = 1772.8807 kcal/mol (1771.8800 without restraints) Performing minimization step: 4511. Total energy = 1772.8261 kcal/mol (1771.8253 without restraints) Performing minimization step: 4512. Total energy = 1772.7714 kcal/mol (1771.7703 without restraints) Performing minimization step: 4513. Total energy = 1772.7166 kcal/mol (1771.7154 without restraints) Performing minimization step: 4514. Total energy = 1772.6619 kcal/mol (1771.6606 without restraints) Performing minimization step: 4515. Total energy = 1772.6071 kcal/mol (1771.6056 without restraints) Performing minimization step: 4516. Total energy = 1772.5527 kcal/mol (1771.5511 without restraints) Performing minimization step: 4517. Total energy = 1772.4982 kcal/mol (1771.4967 without restraints) Performing minimization step: 4518. Total energy = 1772.4438 kcal/mol (1771.4419 without restraints) Performing minimization step: 4519. Total energy = 1772.3893 kcal/mol (1771.3873 without restraints) Performing minimization step: 4520. Total energy = 1772.3350 kcal/mol (1771.3328 without restraints) Performing minimization step: 4521. Total energy = 1772.2806 kcal/mol (1771.2782 without restraints) Performing minimization step: 4522. Total energy = 1772.2261 kcal/mol (1771.2236 without restraints) Performing minimization step: 4523. Total energy = 1772.1716 kcal/mol (1771.1689 without restraints) Performing minimization step: 4524. Total energy = 1772.1174 kcal/mol (1771.1146 without restraints) Performing minimization step: 4525. Total energy = 1772.0629 kcal/mol (1771.0600 without restraints) Performing minimization step: 4526. Total energy = 1772.0089 kcal/mol (1771.0058 without restraints) Performing minimization step: 4527. Total energy = 1771.9545 kcal/mol (1770.9513 without restraints) Performing minimization step: 4528. Total energy = 1771.9005 kcal/mol (1770.8973 without restraints) Performing minimization step: 4529. Total energy = 1771.8469 kcal/mol (1770.8434 without restraints) Performing minimization step: 4530. Total energy = 1771.7930 kcal/mol (1770.7894 without restraints) Performing minimization step: 4531. Total energy = 1771.7387 kcal/mol (1770.7349 without restraints) Performing minimization step: 4532. Total energy = 1771.6847 kcal/mol (1770.6810 without restraints) Performing minimization step: 4533. Total energy = 1771.6307 kcal/mol (1770.6266 without restraints) Performing minimization step: 4534. Total energy = 1771.5770 kcal/mol (1770.5728 without restraints) Performing minimization step: 4535. Total energy = 1771.5229 kcal/mol (1770.5185 without restraints) Performing minimization step: 4536. Total energy = 1771.4688 kcal/mol (1770.4642 without restraints) Performing minimization step: 4537. Total energy = 1771.4151 kcal/mol (1770.4104 without restraints) Performing minimization step: 4538. Total energy = 1771.3613 kcal/mol (1770.3564 without restraints) Performing minimization step: 4539. Total energy = 1771.3077 kcal/mol (1770.3028 without restraints) Performing minimization step: 4540. Total energy = 1771.2538 kcal/mol (1770.2487 without restraints) Performing minimization step: 4541. Total energy = 1771.2004 kcal/mol (1770.1950 without restraints) Performing minimization step: 4542. Total energy = 1771.1465 kcal/mol (1770.1411 without restraints) Performing minimization step: 4543. Total energy = 1771.0925 kcal/mol (1770.0870 without restraints) Performing minimization step: 4544. Total energy = 1771.0384 kcal/mol (1770.0327 without restraints) Performing minimization step: 4545. Total energy = 1770.9846 kcal/mol (1769.9787 without restraints) Performing minimization step: 4546. Total energy = 1770.9308 kcal/mol (1769.9248 without restraints) Performing minimization step: 4547. Total energy = 1770.8770 kcal/mol (1769.8708 without restraints) Performing minimization step: 4548. Total energy = 1770.8236 kcal/mol (1769.8173 without restraints) Performing minimization step: 4549. Total energy = 1770.7699 kcal/mol (1769.7636 without restraints) Performing minimization step: 4550. Total energy = 1770.7163 kcal/mol (1769.7098 without restraints) Performing minimization step: 4551. Total energy = 1770.6630 kcal/mol (1769.6564 without restraints) Performing minimization step: 4552. Total energy = 1770.6098 kcal/mol (1769.6030 without restraints) Performing minimization step: 4553. Total energy = 1770.5562 kcal/mol (1769.5492 without restraints) Performing minimization step: 4554. Total energy = 1770.5028 kcal/mol (1769.4957 without restraints) Performing minimization step: 4555. Total energy = 1770.4493 kcal/mol (1769.4421 without restraints) Performing minimization step: 4556. Total energy = 1770.3958 kcal/mol (1769.3884 without restraints) Performing minimization step: 4557. Total energy = 1770.3427 kcal/mol (1769.3352 without restraints) Performing minimization step: 4558. Total energy = 1770.2892 kcal/mol (1769.2815 without restraints) Performing minimization step: 4559. Total energy = 1770.2359 kcal/mol (1769.2281 without restraints) Performing minimization step: 4560. Total energy = 1770.1828 kcal/mol (1769.1748 without restraints) Performing minimization step: 4561. Total energy = 1770.1294 kcal/mol (1769.1212 without restraints) Performing minimization step: 4562. Total energy = 1770.0765 kcal/mol (1769.0684 without restraints) Performing minimization step: 4563. Total energy = 1770.0238 kcal/mol (1769.0153 without restraints) Performing minimization step: 4564. Total energy = 1769.9704 kcal/mol (1768.9617 without restraints) Performing minimization step: 4565. Total energy = 1769.9170 kcal/mol (1768.9083 without restraints) Performing minimization step: 4566. Total energy = 1769.8637 kcal/mol (1768.8549 without restraints) Performing minimization step: 4567. Total energy = 1769.8107 kcal/mol (1768.8017 without restraints) Performing minimization step: 4568. Total energy = 1769.7576 kcal/mol (1768.7485 without restraints) Performing minimization step: 4569. Total energy = 1769.7044 kcal/mol (1768.6951 without restraints) Performing minimization step: 4570. Total energy = 1769.6513 kcal/mol (1768.6418 without restraints) Performing minimization step: 4571. Total energy = 1769.5986 kcal/mol (1768.5890 without restraints) Performing minimization step: 4572. Total energy = 1769.5455 kcal/mol (1768.5358 without restraints) Performing minimization step: 4573. Total energy = 1769.4929 kcal/mol (1768.4830 without restraints) Performing minimization step: 4574. Total energy = 1769.4398 kcal/mol (1768.4298 without restraints) Performing minimization step: 4575. Total energy = 1769.3868 kcal/mol (1768.3767 without restraints) Performing minimization step: 4576. Total energy = 1769.3339 kcal/mol (1768.3236 without restraints) Performing minimization step: 4577. Total energy = 1769.2810 kcal/mol (1768.2705 without restraints) Performing minimization step: 4578. Total energy = 1769.2280 kcal/mol (1768.2175 without restraints) Performing minimization step: 4579. Total energy = 1769.1753 kcal/mol (1768.1646 without restraints) Performing minimization step: 4580. Total energy = 1769.1228 kcal/mol (1768.1119 without restraints) Performing minimization step: 4581. Total energy = 1769.0700 kcal/mol (1768.0590 without restraints) Performing minimization step: 4582. Total energy = 1769.0172 kcal/mol (1768.0061 without restraints) Performing minimization step: 4583. Total energy = 1768.9644 kcal/mol (1767.9531 without restraints) Performing minimization step: 4584. Total energy = 1768.9118 kcal/mol (1767.9004 without restraints) Performing minimization step: 4585. Total energy = 1768.8594 kcal/mol (1767.8478 without restraints) Performing minimization step: 4586. Total energy = 1768.8069 kcal/mol (1767.7952 without restraints) Performing minimization step: 4587. Total energy = 1768.7544 kcal/mol (1767.7426 without restraints) Performing minimization step: 4588. Total energy = 1768.7017 kcal/mol (1767.6898 without restraints) Performing minimization step: 4589. Total energy = 1768.6491 kcal/mol (1767.6370 without restraints) Performing minimization step: 4590. Total energy = 1768.5965 kcal/mol (1767.5842 without restraints) Performing minimization step: 4591. Total energy = 1768.5441 kcal/mol (1767.5318 without restraints) Performing minimization step: 4592. Total energy = 1768.4920 kcal/mol (1767.4795 without restraints) Performing minimization step: 4593. Total energy = 1768.4395 kcal/mol (1767.4269 without restraints) Performing minimization step: 4594. Total energy = 1768.3869 kcal/mol (1767.3741 without restraints) Performing minimization step: 4595. Total energy = 1768.3345 kcal/mol (1767.3215 without restraints) Performing minimization step: 4596. Total energy = 1768.2820 kcal/mol (1767.2689 without restraints) Performing minimization step: 4597. Total energy = 1768.2297 kcal/mol (1767.2165 without restraints) Performing minimization step: 4598. Total energy = 1768.1778 kcal/mol (1767.1644 without restraints) Performing minimization step: 4599. Total energy = 1768.1257 kcal/mol (1767.1122 without restraints) Performing minimization step: 4600. Total energy = 1768.0734 kcal/mol (1767.0597 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 1768.0211 kcal/mol (1767.0073 without restraints) Performing minimization step: 4602. Total energy = 1767.9688 kcal/mol (1766.9548 without restraints) Performing minimization step: 4603. Total energy = 1767.9166 kcal/mol (1766.9024 without restraints) Performing minimization step: 4604. Total energy = 1767.8646 kcal/mol (1766.8504 without restraints) Performing minimization step: 4605. Total energy = 1767.8129 kcal/mol (1766.7986 without restraints) Performing minimization step: 4606. Total energy = 1767.7611 kcal/mol (1766.7468 without restraints) Performing minimization step: 4607. Total energy = 1767.7092 kcal/mol (1766.6945 without restraints) Performing minimization step: 4608. Total energy = 1767.6580 kcal/mol (1766.6438 without restraints) Performing minimization step: 4609. Total energy = 1767.6068 kcal/mol (1766.5919 without restraints) Performing minimization step: 4610. Total energy = 1767.5551 kcal/mol (1766.5401 without restraints) Performing minimization step: 4611. Total energy = 1767.5033 kcal/mol (1766.4881 without restraints) Performing minimization step: 4612. Total energy = 1767.4515 kcal/mol (1766.4362 without restraints) Performing minimization step: 4613. Total energy = 1767.3996 kcal/mol (1766.3841 without restraints) Performing minimization step: 4614. Total energy = 1767.3478 kcal/mol (1766.3322 without restraints) Performing minimization step: 4615. Total energy = 1767.2962 kcal/mol (1766.2804 without restraints) Performing minimization step: 4616. Total energy = 1767.2445 kcal/mol (1766.2288 without restraints) Performing minimization step: 4617. Total energy = 1767.1930 kcal/mol (1766.1770 without restraints) Performing minimization step: 4618. Total energy = 1767.1414 kcal/mol (1766.1252 without restraints) Performing minimization step: 4619. Total energy = 1767.0896 kcal/mol (1766.0732 without restraints) Performing minimization step: 4620. Total energy = 1767.0380 kcal/mol (1766.0215 without restraints) Performing minimization step: 4621. Total energy = 1766.9861 kcal/mol (1765.9695 without restraints) Performing minimization step: 4622. Total energy = 1766.9348 kcal/mol (1765.9180 without restraints) Performing minimization step: 4623. Total energy = 1766.8832 kcal/mol (1765.8663 without restraints) Performing minimization step: 4624. Total energy = 1766.8319 kcal/mol (1765.8149 without restraints) Performing minimization step: 4625. Total energy = 1766.7803 kcal/mol (1765.7632 without restraints) Performing minimization step: 4626. Total energy = 1766.7287 kcal/mol (1765.7114 without restraints) Performing minimization step: 4627. Total energy = 1766.6771 kcal/mol (1765.6596 without restraints) Performing minimization step: 4628. Total energy = 1766.6259 kcal/mol (1765.6082 without restraints) Performing minimization step: 4629. Total energy = 1766.5744 kcal/mol (1765.5567 without restraints) Performing minimization step: 4630. Total energy = 1766.5232 kcal/mol (1765.5053 without restraints) Performing minimization step: 4631. Total energy = 1766.4717 kcal/mol (1765.4537 without restraints) Performing minimization step: 4632. Total energy = 1766.4208 kcal/mol (1765.4026 without restraints) Performing minimization step: 4633. Total energy = 1766.3694 kcal/mol (1765.3511 without restraints) Performing minimization step: 4634. Total energy = 1766.3180 kcal/mol (1765.2995 without restraints) Performing minimization step: 4635. Total energy = 1766.2669 kcal/mol (1765.2483 without restraints) Performing minimization step: 4636. Total energy = 1766.2155 kcal/mol (1765.1968 without restraints) Performing minimization step: 4637. Total energy = 1766.1642 kcal/mol (1765.1453 without restraints) Performing minimization step: 4638. Total energy = 1766.1133 kcal/mol (1765.0943 without restraints) Performing minimization step: 4639. Total energy = 1766.0620 kcal/mol (1765.0429 without restraints) Performing minimization step: 4640. Total energy = 1766.0108 kcal/mol (1764.9917 without restraints) Performing minimization step: 4641. Total energy = 1765.9598 kcal/mol (1764.9404 without restraints) Performing minimization step: 4642. Total energy = 1765.9090 kcal/mol (1764.8895 without restraints) Performing minimization step: 4643. Total energy = 1765.8578 kcal/mol (1764.8381 without restraints) Performing minimization step: 4644. Total energy = 1765.8066 kcal/mol (1764.7868 without restraints) Performing minimization step: 4645. Total energy = 1765.7555 kcal/mol (1764.7355 without restraints) Performing minimization step: 4646. Total energy = 1765.7048 kcal/mol (1764.6847 without restraints) Performing minimization step: 4647. Total energy = 1765.6539 kcal/mol (1764.6336 without restraints) Performing minimization step: 4648. Total energy = 1765.6027 kcal/mol (1764.5823 without restraints) Performing minimization step: 4649. Total energy = 1765.5518 kcal/mol (1764.5313 without restraints) Performing minimization step: 4650. Total energy = 1765.5008 kcal/mol (1764.4802 without restraints) Performing minimization step: 4651. Total energy = 1765.4505 kcal/mol (1764.4297 without restraints) Performing minimization step: 4652. Total energy = 1765.3995 kcal/mol (1764.3786 without restraints) Performing minimization step: 4653. Total energy = 1765.3492 kcal/mol (1764.3281 without restraints) Performing minimization step: 4654. Total energy = 1765.2982 kcal/mol (1764.2770 without restraints) Performing minimization step: 4655. Total energy = 1765.2474 kcal/mol (1764.2261 without restraints) Performing minimization step: 4656. Total energy = 1765.1967 kcal/mol (1764.1752 without restraints) Performing minimization step: 4657. Total energy = 1765.1459 kcal/mol (1764.1243 without restraints) Performing minimization step: 4658. Total energy = 1765.0951 kcal/mol (1764.0733 without restraints) Performing minimization step: 4659. Total energy = 1765.0443 kcal/mol (1764.0225 without restraints) Performing minimization step: 4660. Total energy = 1764.9936 kcal/mol (1763.9716 without restraints) Performing minimization step: 4661. Total energy = 1764.9429 kcal/mol (1763.9207 without restraints) Performing minimization step: 4662. Total energy = 1764.8925 kcal/mol (1763.8702 without restraints) Performing minimization step: 4663. Total energy = 1764.8419 kcal/mol (1763.8194 without restraints) Performing minimization step: 4664. Total energy = 1764.7915 kcal/mol (1763.7689 without restraints) Performing minimization step: 4665. Total energy = 1764.7411 kcal/mol (1763.7184 without restraints) Performing minimization step: 4666. Total energy = 1764.6905 kcal/mol (1763.6677 without restraints) Performing minimization step: 4667. Total energy = 1764.6400 kcal/mol (1763.6170 without restraints) Performing minimization step: 4668. Total energy = 1764.5895 kcal/mol (1763.5663 without restraints) Performing minimization step: 4669. Total energy = 1764.5390 kcal/mol (1763.5157 without restraints) Performing minimization step: 4670. Total energy = 1764.4885 kcal/mol (1763.4651 without restraints) Performing minimization step: 4671. Total energy = 1764.4381 kcal/mol (1763.4146 without restraints) Performing minimization step: 4672. Total energy = 1764.3877 kcal/mol (1763.3640 without restraints) Performing minimization step: 4673. Total energy = 1764.3373 kcal/mol (1763.3136 without restraints) Performing minimization step: 4674. Total energy = 1764.2873 kcal/mol (1763.2634 without restraints) Performing minimization step: 4675. Total energy = 1764.2369 kcal/mol (1763.2129 without restraints) Performing minimization step: 4676. Total energy = 1764.1867 kcal/mol (1763.1625 without restraints) Performing minimization step: 4677. Total energy = 1764.1364 kcal/mol (1763.1120 without restraints) Performing minimization step: 4678. Total energy = 1764.0861 kcal/mol (1763.0616 without restraints) Performing minimization step: 4679. Total energy = 1764.0357 kcal/mol (1763.0111 without restraints) Performing minimization step: 4680. Total energy = 1763.9859 kcal/mol (1762.9612 without restraints) Performing minimization step: 4681. Total energy = 1763.9357 kcal/mol (1762.9109 without restraints) Performing minimization step: 4682. Total energy = 1763.8851 kcal/mol (1762.8601 without restraints) Performing minimization step: 4683. Total energy = 1763.8350 kcal/mol (1762.8098 without restraints) Performing minimization step: 4684. Total energy = 1763.7848 kcal/mol (1762.7595 without restraints) Performing minimization step: 4685. Total energy = 1763.7347 kcal/mol (1762.7092 without restraints) Performing minimization step: 4686. Total energy = 1763.6846 kcal/mol (1762.6590 without restraints) Performing minimization step: 4687. Total energy = 1763.6351 kcal/mol (1762.6094 without restraints) Performing minimization step: 4688. Total energy = 1763.5850 kcal/mol (1762.5592 without restraints) Performing minimization step: 4689. Total energy = 1763.5352 kcal/mol (1762.5093 without restraints) Performing minimization step: 4690. Total energy = 1763.4855 kcal/mol (1762.4594 without restraints) Performing minimization step: 4691. Total energy = 1763.4355 kcal/mol (1762.4092 without restraints) Performing minimization step: 4692. Total energy = 1763.3855 kcal/mol (1762.3592 without restraints) Performing minimization step: 4693. Total energy = 1763.3356 kcal/mol (1762.3092 without restraints) Performing minimization step: 4694. Total energy = 1763.2862 kcal/mol (1762.2595 without restraints) Performing minimization step: 4695. Total energy = 1763.2364 kcal/mol (1762.2096 without restraints) Performing minimization step: 4696. Total energy = 1763.1869 kcal/mol (1762.1600 without restraints) Performing minimization step: 4697. Total energy = 1763.1370 kcal/mol (1762.1100 without restraints) Performing minimization step: 4698. Total energy = 1763.0877 kcal/mol (1762.0606 without restraints) Performing minimization step: 4699. Total energy = 1763.0382 kcal/mol (1762.0109 without restraints) Performing minimization step: 4700. Total energy = 1762.9892 kcal/mol (1761.9617 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 1762.9395 kcal/mol (1761.9119 without restraints) Performing minimization step: 4702. Total energy = 1762.8898 kcal/mol (1761.8621 without restraints) Performing minimization step: 4703. Total energy = 1762.8406 kcal/mol (1761.8127 without restraints) Performing minimization step: 4704. Total energy = 1762.7911 kcal/mol (1761.7632 without restraints) Performing minimization step: 4705. Total energy = 1762.7415 kcal/mol (1761.7134 without restraints) Performing minimization step: 4706. Total energy = 1762.6921 kcal/mol (1761.6639 without restraints) Performing minimization step: 4707. Total energy = 1762.6430 kcal/mol (1761.6146 without restraints) Performing minimization step: 4708. Total energy = 1762.5934 kcal/mol (1761.5649 without restraints) Performing minimization step: 4709. Total energy = 1762.5439 kcal/mol (1761.5153 without restraints) Performing minimization step: 4710. Total energy = 1762.4946 kcal/mol (1761.4659 without restraints) Performing minimization step: 4711. Total energy = 1762.4455 kcal/mol (1761.4166 without restraints) Performing minimization step: 4712. Total energy = 1762.3961 kcal/mol (1761.3670 without restraints) Performing minimization step: 4713. Total energy = 1762.3466 kcal/mol (1761.3175 without restraints) Performing minimization step: 4714. Total energy = 1762.2973 kcal/mol (1761.2680 without restraints) Performing minimization step: 4715. Total energy = 1762.2479 kcal/mol (1761.2185 without restraints) Performing minimization step: 4716. Total energy = 1762.1990 kcal/mol (1761.1694 without restraints) Performing minimization step: 4717. Total energy = 1762.1494 kcal/mol (1761.1197 without restraints) Performing minimization step: 4718. Total energy = 1762.1001 kcal/mol (1761.0703 without restraints) Performing minimization step: 4719. Total energy = 1762.0508 kcal/mol (1761.0209 without restraints) Performing minimization step: 4720. Total energy = 1762.0017 kcal/mol (1760.9715 without restraints) Performing minimization step: 4721. Total energy = 1761.9524 kcal/mol (1760.9222 without restraints) Performing minimization step: 4722. Total energy = 1761.9035 kcal/mol (1760.8732 without restraints) Performing minimization step: 4723. Total energy = 1761.8547 kcal/mol (1760.8242 without restraints) Performing minimization step: 4724. Total energy = 1761.8055 kcal/mol (1760.7749 without restraints) Performing minimization step: 4725. Total energy = 1761.7568 kcal/mol (1760.7260 without restraints) Performing minimization step: 4726. Total energy = 1761.7079 kcal/mol (1760.6770 without restraints) Performing minimization step: 4727. Total energy = 1761.6586 kcal/mol (1760.6276 without restraints) Performing minimization step: 4728. Total energy = 1761.6100 kcal/mol (1760.5790 without restraints) Performing minimization step: 4729. Total energy = 1761.5611 kcal/mol (1760.5298 without restraints) Performing minimization step: 4730. Total energy = 1761.5119 kcal/mol (1760.4805 without restraints) Performing minimization step: 4731. Total energy = 1761.4629 kcal/mol (1760.4314 without restraints) Performing minimization step: 4732. Total energy = 1761.4142 kcal/mol (1760.3825 without restraints) Performing minimization step: 4733. Total energy = 1761.3652 kcal/mol (1760.3334 without restraints) Performing minimization step: 4734. Total energy = 1761.3164 kcal/mol (1760.2844 without restraints) Performing minimization step: 4735. Total energy = 1761.2679 kcal/mol (1760.2358 without restraints) Performing minimization step: 4736. Total energy = 1761.2191 kcal/mol (1760.1869 without restraints) Performing minimization step: 4737. Total energy = 1761.1707 kcal/mol (1760.1384 without restraints) Performing minimization step: 4738. Total energy = 1761.1220 kcal/mol (1760.0895 without restraints) Performing minimization step: 4739. Total energy = 1761.0733 kcal/mol (1760.0408 without restraints) Performing minimization step: 4740. Total energy = 1761.0247 kcal/mol (1759.9920 without restraints) Performing minimization step: 4741. Total energy = 1760.9763 kcal/mol (1759.9435 without restraints) Performing minimization step: 4742. Total energy = 1760.9278 kcal/mol (1759.8948 without restraints) Performing minimization step: 4743. Total energy = 1760.8792 kcal/mol (1759.8459 without restraints) Performing minimization step: 4744. Total energy = 1760.8302 kcal/mol (1759.7970 without restraints) Performing minimization step: 4745. Total energy = 1760.7817 kcal/mol (1759.7485 without restraints) Performing minimization step: 4746. Total energy = 1760.7334 kcal/mol (1759.7000 without restraints) Performing minimization step: 4747. Total energy = 1760.6849 kcal/mol (1759.6512 without restraints) Performing minimization step: 4748. Total energy = 1760.6365 kcal/mol (1759.6028 without restraints) Performing minimization step: 4749. Total energy = 1760.5880 kcal/mol (1759.5541 without restraints) Performing minimization step: 4750. Total energy = 1760.5397 kcal/mol (1759.5057 without restraints) Performing minimization step: 4751. Total energy = 1760.4914 kcal/mol (1759.4572 without restraints) Performing minimization step: 4752. Total energy = 1760.4432 kcal/mol (1759.4090 without restraints) Performing minimization step: 4753. Total energy = 1760.3949 kcal/mol (1759.3604 without restraints) Performing minimization step: 4754. Total energy = 1760.3464 kcal/mol (1759.3119 without restraints) Performing minimization step: 4755. Total energy = 1760.2982 kcal/mol (1759.2635 without restraints) Performing minimization step: 4756. Total energy = 1760.2498 kcal/mol (1759.2150 without restraints) Performing minimization step: 4757. Total energy = 1760.2020 kcal/mol (1759.1670 without restraints) Performing minimization step: 4758. Total energy = 1760.1538 kcal/mol (1759.1188 without restraints) Performing minimization step: 4759. Total energy = 1760.1056 kcal/mol (1759.0705 without restraints) Performing minimization step: 4760. Total energy = 1760.0574 kcal/mol (1759.0221 without restraints) Performing minimization step: 4761. Total energy = 1760.0092 kcal/mol (1758.9738 without restraints) Performing minimization step: 4762. Total energy = 1759.9610 kcal/mol (1758.9254 without restraints) Performing minimization step: 4763. Total energy = 1759.9127 kcal/mol (1758.8769 without restraints) Performing minimization step: 4764. Total energy = 1759.8646 kcal/mol (1758.8288 without restraints) Performing minimization step: 4765. Total energy = 1759.8169 kcal/mol (1758.7810 without restraints) Performing minimization step: 4766. Total energy = 1759.7691 kcal/mol (1758.7331 without restraints) Performing minimization step: 4767. Total energy = 1759.7213 kcal/mol (1758.6850 without restraints) Performing minimization step: 4768. Total energy = 1759.6732 kcal/mol (1758.6368 without restraints) Performing minimization step: 4769. Total energy = 1759.6263 kcal/mol (1758.5898 without restraints) Performing minimization step: 4770. Total energy = 1759.5784 kcal/mol (1758.5419 without restraints) Performing minimization step: 4771. Total energy = 1759.5307 kcal/mol (1758.4942 without restraints) Performing minimization step: 4772. Total energy = 1759.4830 kcal/mol (1758.4461 without restraints) Performing minimization step: 4773. Total energy = 1759.4348 kcal/mol (1758.3978 without restraints) Performing minimization step: 4774. Total energy = 1759.3870 kcal/mol (1758.3499 without restraints) Performing minimization step: 4775. Total energy = 1759.3391 kcal/mol (1758.3018 without restraints) Performing minimization step: 4776. Total energy = 1759.2912 kcal/mol (1758.2538 without restraints) Performing minimization step: 4777. Total energy = 1759.2434 kcal/mol (1758.2059 without restraints) Performing minimization step: 4778. Total energy = 1759.1959 kcal/mol (1758.1584 without restraints) Performing minimization step: 4779. Total energy = 1759.1483 kcal/mol (1758.1105 without restraints) Performing minimization step: 4780. Total energy = 1759.1003 kcal/mol (1758.0623 without restraints) Performing minimization step: 4781. Total energy = 1759.0524 kcal/mol (1758.0144 without restraints) Performing minimization step: 4782. Total energy = 1759.0048 kcal/mol (1757.9667 without restraints) Performing minimization step: 4783. Total energy = 1758.9573 kcal/mol (1757.9190 without restraints) Performing minimization step: 4784. Total energy = 1758.9096 kcal/mol (1757.8712 without restraints) Performing minimization step: 4785. Total energy = 1758.8620 kcal/mol (1757.8236 without restraints) Performing minimization step: 4786. Total energy = 1758.8145 kcal/mol (1757.7758 without restraints) Performing minimization step: 4787. Total energy = 1758.7669 kcal/mol (1757.7281 without restraints) Performing minimization step: 4788. Total energy = 1758.7195 kcal/mol (1757.6805 without restraints) Performing minimization step: 4789. Total energy = 1758.6723 kcal/mol (1757.6333 without restraints) Performing minimization step: 4790. Total energy = 1758.6251 kcal/mol (1757.5859 without restraints) Performing minimization step: 4791. Total energy = 1758.5778 kcal/mol (1757.5386 without restraints) Performing minimization step: 4792. Total energy = 1758.5302 kcal/mol (1757.4908 without restraints) Performing minimization step: 4793. Total energy = 1758.4830 kcal/mol (1757.4436 without restraints) Performing minimization step: 4794. Total energy = 1758.4361 kcal/mol (1757.3963 without restraints) Performing minimization step: 4795. Total energy = 1758.3887 kcal/mol (1757.3489 without restraints) Performing minimization step: 4796. Total energy = 1758.3421 kcal/mol (1757.3021 without restraints) Performing minimization step: 4797. Total energy = 1758.2946 kcal/mol (1757.2546 without restraints) Performing minimization step: 4798. Total energy = 1758.2472 kcal/mol (1757.2070 without restraints) Performing minimization step: 4799. Total energy = 1758.1998 kcal/mol (1757.1594 without restraints) Performing minimization step: 4800. Total energy = 1758.1524 kcal/mol (1757.1119 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 1758.1055 kcal/mol (1757.0649 without restraints) Performing minimization step: 4802. Total energy = 1758.0585 kcal/mol (1757.0178 without restraints) Performing minimization step: 4803. Total energy = 1758.0113 kcal/mol (1756.9704 without restraints) Performing minimization step: 4804. Total energy = 1757.9640 kcal/mol (1756.9231 without restraints) Performing minimization step: 4805. Total energy = 1757.9168 kcal/mol (1756.8757 without restraints) Performing minimization step: 4806. Total energy = 1757.8696 kcal/mol (1756.8284 without restraints) Performing minimization step: 4807. Total energy = 1757.8224 kcal/mol (1756.7811 without restraints) Performing minimization step: 4808. Total energy = 1757.7753 kcal/mol (1756.7338 without restraints) Performing minimization step: 4809. Total energy = 1757.7284 kcal/mol (1756.6869 without restraints) Performing minimization step: 4810. Total energy = 1757.6814 kcal/mol (1756.6398 without restraints) Performing minimization step: 4811. Total energy = 1757.6342 kcal/mol (1756.5923 without restraints) Performing minimization step: 4812. Total energy = 1757.5874 kcal/mol (1756.5454 without restraints) Performing minimization step: 4813. Total energy = 1757.5408 kcal/mol (1756.4987 without restraints) Performing minimization step: 4814. Total energy = 1757.4936 kcal/mol (1756.4514 without restraints) Performing minimization step: 4815. Total energy = 1757.4467 kcal/mol (1756.4045 without restraints) Performing minimization step: 4816. Total energy = 1757.3998 kcal/mol (1756.3574 without restraints) Performing minimization step: 4817. Total energy = 1757.3534 kcal/mol (1756.3108 without restraints) Performing minimization step: 4818. Total energy = 1757.3064 kcal/mol (1756.2637 without restraints) Performing minimization step: 4819. Total energy = 1757.2597 kcal/mol (1756.2169 without restraints) Performing minimization step: 4820. Total energy = 1757.2129 kcal/mol (1756.1699 without restraints) Performing minimization step: 4821. Total energy = 1757.1663 kcal/mol (1756.1232 without restraints) Performing minimization step: 4822. Total energy = 1757.1195 kcal/mol (1756.0763 without restraints) Performing minimization step: 4823. Total energy = 1757.0727 kcal/mol (1756.0293 without restraints) Performing minimization step: 4824. Total energy = 1757.0261 kcal/mol (1755.9826 without restraints) Performing minimization step: 4825. Total energy = 1756.9793 kcal/mol (1755.9358 without restraints) Performing minimization step: 4826. Total energy = 1756.9324 kcal/mol (1755.8887 without restraints) Performing minimization step: 4827. Total energy = 1756.8859 kcal/mol (1755.8421 without restraints) Performing minimization step: 4828. Total energy = 1756.8393 kcal/mol (1755.7953 without restraints) Performing minimization step: 4829. Total energy = 1756.7926 kcal/mol (1755.7486 without restraints) Performing minimization step: 4830. Total energy = 1756.7461 kcal/mol (1755.7019 without restraints) Performing minimization step: 4831. Total energy = 1756.6995 kcal/mol (1755.6551 without restraints) Performing minimization step: 4832. Total energy = 1756.6525 kcal/mol (1755.6080 without restraints) Performing minimization step: 4833. Total energy = 1756.6060 kcal/mol (1755.5614 without restraints) Performing minimization step: 4834. Total energy = 1756.5594 kcal/mol (1755.5148 without restraints) Performing minimization step: 4835. Total energy = 1756.5129 kcal/mol (1755.4681 without restraints) Performing minimization step: 4836. Total energy = 1756.4669 kcal/mol (1755.4220 without restraints) Performing minimization step: 4837. Total energy = 1756.4207 kcal/mol (1755.3756 without restraints) Performing minimization step: 4838. Total energy = 1756.3740 kcal/mol (1755.3289 without restraints) Performing minimization step: 4839. Total energy = 1756.3276 kcal/mol (1755.2823 without restraints) Performing minimization step: 4840. Total energy = 1756.2812 kcal/mol (1755.2358 without restraints) Performing minimization step: 4841. Total energy = 1756.2348 kcal/mol (1755.1892 without restraints) Performing minimization step: 4842. Total energy = 1756.1884 kcal/mol (1755.1427 without restraints) Performing minimization step: 4843. Total energy = 1756.1417 kcal/mol (1755.0959 without restraints) Performing minimization step: 4844. Total energy = 1756.0956 kcal/mol (1755.0497 without restraints) Performing minimization step: 4845. Total energy = 1756.0493 kcal/mol (1755.0032 without restraints) Performing minimization step: 4846. Total energy = 1756.0030 kcal/mol (1754.9568 without restraints) Performing minimization step: 4847. Total energy = 1755.9567 kcal/mol (1754.9104 without restraints) Performing minimization step: 4848. Total energy = 1755.9105 kcal/mol (1754.8641 without restraints) Performing minimization step: 4849. Total energy = 1755.8640 kcal/mol (1754.8175 without restraints) Performing minimization step: 4850. Total energy = 1755.8179 kcal/mol (1754.7711 without restraints) Performing minimization step: 4851. Total energy = 1755.7716 kcal/mol (1754.7248 without restraints) Performing minimization step: 4852. Total energy = 1755.7259 kcal/mol (1754.6790 without restraints) Performing minimization step: 4853. Total energy = 1755.6797 kcal/mol (1754.6327 without restraints) Performing minimization step: 4854. Total energy = 1755.6336 kcal/mol (1754.5865 without restraints) Performing minimization step: 4855. Total energy = 1755.5877 kcal/mol (1754.5404 without restraints) Performing minimization step: 4856. Total energy = 1755.5422 kcal/mol (1754.4949 without restraints) Performing minimization step: 4857. Total energy = 1755.4961 kcal/mol (1754.4484 without restraints) Performing minimization step: 4858. Total energy = 1755.4499 kcal/mol (1754.4023 without restraints) Performing minimization step: 4859. Total energy = 1755.4039 kcal/mol (1754.3562 without restraints) Performing minimization step: 4860. Total energy = 1755.3579 kcal/mol (1754.3101 without restraints) Performing minimization step: 4861. Total energy = 1755.3121 kcal/mol (1754.2642 without restraints) Performing minimization step: 4862. Total energy = 1755.2667 kcal/mol (1754.2186 without restraints) Performing minimization step: 4863. Total energy = 1755.2210 kcal/mol (1754.1728 without restraints) Performing minimization step: 4864. Total energy = 1755.1753 kcal/mol (1754.1270 without restraints) Performing minimization step: 4865. Total energy = 1755.1296 kcal/mol (1754.0811 without restraints) Performing minimization step: 4866. Total energy = 1755.0839 kcal/mol (1754.0354 without restraints) Performing minimization step: 4867. Total energy = 1755.0382 kcal/mol (1753.9895 without restraints) Performing minimization step: 4868. Total energy = 1754.9924 kcal/mol (1753.9435 without restraints) Performing minimization step: 4869. Total energy = 1754.9466 kcal/mol (1753.8976 without restraints) Performing minimization step: 4870. Total energy = 1754.9008 kcal/mol (1753.8518 without restraints) Performing minimization step: 4871. Total energy = 1754.8551 kcal/mol (1753.8060 without restraints) Performing minimization step: 4872. Total energy = 1754.8094 kcal/mol (1753.7601 without restraints) Performing minimization step: 4873. Total energy = 1754.7637 kcal/mol (1753.7143 without restraints) Performing minimization step: 4874. Total energy = 1754.7181 kcal/mol (1753.6686 without restraints) Performing minimization step: 4875. Total energy = 1754.6725 kcal/mol (1753.6228 without restraints) Performing minimization step: 4876. Total energy = 1754.6269 kcal/mol (1753.5771 without restraints) Performing minimization step: 4877. Total energy = 1754.5813 kcal/mol (1753.5314 without restraints) Performing minimization step: 4878. Total energy = 1754.5357 kcal/mol (1753.4855 without restraints) Performing minimization step: 4879. Total energy = 1754.4898 kcal/mol (1753.4397 without restraints) Performing minimization step: 4880. Total energy = 1754.4443 kcal/mol (1753.3940 without restraints) Performing minimization step: 4881. Total energy = 1754.3987 kcal/mol (1753.3483 without restraints) Performing minimization step: 4882. Total energy = 1754.3534 kcal/mol (1753.3030 without restraints) Performing minimization step: 4883. Total energy = 1754.3082 kcal/mol (1753.2576 without restraints) Performing minimization step: 4884. Total energy = 1754.2628 kcal/mol (1753.2121 without restraints) Performing minimization step: 4885. Total energy = 1754.2172 kcal/mol (1753.1663 without restraints) Performing minimization step: 4886. Total energy = 1754.1719 kcal/mol (1753.1209 without restraints) Performing minimization step: 4887. Total energy = 1754.1267 kcal/mol (1753.0756 without restraints) Performing minimization step: 4888. Total energy = 1754.0816 kcal/mol (1753.0304 without restraints) Performing minimization step: 4889. Total energy = 1754.0363 kcal/mol (1752.9849 without restraints) Performing minimization step: 4890. Total energy = 1753.9908 kcal/mol (1752.9393 without restraints) Performing minimization step: 4891. Total energy = 1753.9455 kcal/mol (1752.8939 without restraints) Performing minimization step: 4892. Total energy = 1753.9002 kcal/mol (1752.8485 without restraints) Performing minimization step: 4893. Total energy = 1753.8551 kcal/mol (1752.8033 without restraints) Performing minimization step: 4894. Total energy = 1753.8099 kcal/mol (1752.7580 without restraints) Performing minimization step: 4895. Total energy = 1753.7647 kcal/mol (1752.7127 without restraints) Performing minimization step: 4896. Total energy = 1753.7200 kcal/mol (1752.6678 without restraints) Performing minimization step: 4897. Total energy = 1753.6748 kcal/mol (1752.6225 without restraints) Performing minimization step: 4898. Total energy = 1753.6299 kcal/mol (1752.5775 without restraints) Performing minimization step: 4899. Total energy = 1753.5852 kcal/mol (1752.5327 without restraints) Performing minimization step: 4900. Total energy = 1753.5405 kcal/mol (1752.4881 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 1753.4959 kcal/mol (1752.4432 without restraints) Performing minimization step: 4902. Total energy = 1753.4508 kcal/mol (1752.3980 without restraints) Performing minimization step: 4903. Total energy = 1753.4064 kcal/mol (1752.3535 without restraints) Performing minimization step: 4904. Total energy = 1753.3615 kcal/mol (1752.3084 without restraints) Performing minimization step: 4905. Total energy = 1753.3166 kcal/mol (1752.2634 without restraints) Performing minimization step: 4906. Total energy = 1753.2717 kcal/mol (1752.2184 without restraints) Performing minimization step: 4907. Total energy = 1753.2268 kcal/mol (1752.1733 without restraints) Performing minimization step: 4908. Total energy = 1753.1819 kcal/mol (1752.1284 without restraints) Performing minimization step: 4909. Total energy = 1753.1373 kcal/mol (1752.0836 without restraints) Performing minimization step: 4910. Total energy = 1753.0926 kcal/mol (1752.0388 without restraints) Performing minimization step: 4911. Total energy = 1753.0478 kcal/mol (1751.9939 without restraints) Performing minimization step: 4912. Total energy = 1753.0035 kcal/mol (1751.9494 without restraints) Performing minimization step: 4913. Total energy = 1752.9590 kcal/mol (1751.9048 without restraints) Performing minimization step: 4914. Total energy = 1752.9141 kcal/mol (1751.8597 without restraints) Performing minimization step: 4915. Total energy = 1752.8693 kcal/mol (1751.8149 without restraints) Performing minimization step: 4916. Total energy = 1752.8244 kcal/mol (1751.7699 without restraints) Performing minimization step: 4917. Total energy = 1752.7796 kcal/mol (1751.7249 without restraints) Performing minimization step: 4918. Total energy = 1752.7348 kcal/mol (1751.6801 without restraints) Performing minimization step: 4919. Total energy = 1752.6901 kcal/mol (1751.6353 without restraints) Performing minimization step: 4920. Total energy = 1752.6457 kcal/mol (1751.5907 without restraints) Performing minimization step: 4921. Total energy = 1752.6014 kcal/mol (1751.5463 without restraints) Performing minimization step: 4922. Total energy = 1752.5568 kcal/mol (1751.5016 without restraints) Performing minimization step: 4923. Total energy = 1752.5124 kcal/mol (1751.4570 without restraints) Performing minimization step: 4924. Total energy = 1752.4679 kcal/mol (1751.4124 without restraints) Performing minimization step: 4925. Total energy = 1752.4233 kcal/mol (1751.3677 without restraints) Performing minimization step: 4926. Total energy = 1752.3788 kcal/mol (1751.3231 without restraints) Performing minimization step: 4927. Total energy = 1752.3345 kcal/mol (1751.2788 without restraints) Performing minimization step: 4928. Total energy = 1752.2900 kcal/mol (1751.2341 without restraints) Performing minimization step: 4929. Total energy = 1752.2457 kcal/mol (1751.1895 without restraints) Performing minimization step: 4930. Total energy = 1752.2012 kcal/mol (1751.1450 without restraints) Performing minimization step: 4931. Total energy = 1752.1566 kcal/mol (1751.1004 without restraints) Performing minimization step: 4932. Total energy = 1752.1124 kcal/mol (1751.0561 without restraints) Performing minimization step: 4933. Total energy = 1752.0681 kcal/mol (1751.0116 without restraints) Performing minimization step: 4934. Total energy = 1752.0237 kcal/mol (1750.9671 without restraints) Performing minimization step: 4935. Total energy = 1751.9794 kcal/mol (1750.9227 without restraints) Performing minimization step: 4936. Total energy = 1751.9353 kcal/mol (1750.8785 without restraints) Performing minimization step: 4937. Total energy = 1751.8911 kcal/mol (1750.8343 without restraints) Performing minimization step: 4938. Total energy = 1751.8472 kcal/mol (1750.7903 without restraints) Performing minimization step: 4939. Total energy = 1751.8035 kcal/mol (1750.7463 without restraints) Performing minimization step: 4940. Total energy = 1751.7593 kcal/mol (1750.7020 without restraints) Performing minimization step: 4941. Total energy = 1751.7155 kcal/mol (1750.6581 without restraints) Performing minimization step: 4942. Total energy = 1751.6715 kcal/mol (1750.6139 without restraints) Performing minimization step: 4943. Total energy = 1751.6275 kcal/mol (1750.5700 without restraints) Performing minimization step: 4944. Total energy = 1751.5838 kcal/mol (1750.5260 without restraints) Performing minimization step: 4945. Total energy = 1751.5397 kcal/mol (1750.4818 without restraints) Performing minimization step: 4946. Total energy = 1751.4956 kcal/mol (1750.4376 without restraints) Performing minimization step: 4947. Total energy = 1751.4517 kcal/mol (1750.3936 without restraints) Performing minimization step: 4948. Total energy = 1751.4077 kcal/mol (1750.3495 without restraints) Performing minimization step: 4949. Total energy = 1751.3640 kcal/mol (1750.3057 without restraints) Performing minimization step: 4950. Total energy = 1751.3202 kcal/mol (1750.2618 without restraints) Performing minimization step: 4951. Total energy = 1751.2763 kcal/mol (1750.2179 without restraints) Performing minimization step: 4952. Total energy = 1751.2327 kcal/mol (1750.1740 without restraints) Performing minimization step: 4953. Total energy = 1751.1890 kcal/mol (1750.1302 without restraints) Performing minimization step: 4954. Total energy = 1751.1451 kcal/mol (1750.0862 without restraints) Performing minimization step: 4955. Total energy = 1751.1014 kcal/mol (1750.0424 without restraints) Performing minimization step: 4956. Total energy = 1751.0576 kcal/mol (1749.9985 without restraints) Performing minimization step: 4957. Total energy = 1751.0137 kcal/mol (1749.9545 without restraints) Performing minimization step: 4958. Total energy = 1750.9699 kcal/mol (1749.9106 without restraints) Performing minimization step: 4959. Total energy = 1750.9265 kcal/mol (1749.8671 without restraints) Performing minimization step: 4960. Total energy = 1750.8827 kcal/mol (1749.8231 without restraints) Performing minimization step: 4961. Total energy = 1750.8392 kcal/mol (1749.7795 without restraints) Performing minimization step: 4962. Total energy = 1750.7954 kcal/mol (1749.7357 without restraints) Performing minimization step: 4963. Total energy = 1750.7519 kcal/mol (1749.6920 without restraints) Performing minimization step: 4964. Total energy = 1750.7082 kcal/mol (1749.6482 without restraints) Performing minimization step: 4965. Total energy = 1750.6647 kcal/mol (1749.6046 without restraints) Performing minimization step: 4966. Total energy = 1750.6214 kcal/mol (1749.5612 without restraints) Performing minimization step: 4967. Total energy = 1750.5780 kcal/mol (1749.5177 without restraints) Performing minimization step: 4968. Total energy = 1750.5345 kcal/mol (1749.4741 without restraints) Performing minimization step: 4969. Total energy = 1750.4909 kcal/mol (1749.4304 without restraints) Performing minimization step: 4970. Total energy = 1750.4473 kcal/mol (1749.3867 without restraints) Performing minimization step: 4971. Total energy = 1750.4040 kcal/mol (1749.3432 without restraints) Performing minimization step: 4972. Total energy = 1750.3614 kcal/mol (1749.3005 without restraints) Performing minimization step: 4973. Total energy = 1750.3181 kcal/mol (1749.2570 without restraints) Performing minimization step: 4974. Total energy = 1750.2750 kcal/mol (1749.2139 without restraints) Performing minimization step: 4975. Total energy = 1750.2317 kcal/mol (1749.1705 without restraints) Performing minimization step: 4976. Total energy = 1750.1883 kcal/mol (1749.1269 without restraints) Performing minimization step: 4977. Total energy = 1750.1449 kcal/mol (1749.0834 without restraints) Performing minimization step: 4978. Total energy = 1750.1016 kcal/mol (1749.0400 without restraints) Performing minimization step: 4979. Total energy = 1750.0582 kcal/mol (1748.9965 without restraints) Performing minimization step: 4980. Total energy = 1750.0150 kcal/mol (1748.9533 without restraints) Performing minimization step: 4981. Total energy = 1749.9719 kcal/mol (1748.9102 without restraints) Performing minimization step: 4982. Total energy = 1749.9288 kcal/mol (1748.8668 without restraints) Performing minimization step: 4983. Total energy = 1749.8855 kcal/mol (1748.8233 without restraints) Performing minimization step: 4984. Total energy = 1749.8424 kcal/mol (1748.7801 without restraints) Performing minimization step: 4985. Total energy = 1749.7993 kcal/mol (1748.7370 without restraints) Performing minimization step: 4986. Total energy = 1749.7563 kcal/mol (1748.6938 without restraints) Performing minimization step: 4987. Total energy = 1749.7132 kcal/mol (1748.6507 without restraints) Performing minimization step: 4988. Total energy = 1749.6700 kcal/mol (1748.6074 without restraints) Performing minimization step: 4989. Total energy = 1749.6269 kcal/mol (1748.5640 without restraints) Performing minimization step: 4990. Total energy = 1749.5837 kcal/mol (1748.5208 without restraints) Performing minimization step: 4991. Total energy = 1749.5405 kcal/mol (1748.4775 without restraints) Performing minimization step: 4992. Total energy = 1749.4974 kcal/mol (1748.4343 without restraints) Performing minimization step: 4993. Total energy = 1749.4546 kcal/mol (1748.3914 without restraints) Performing minimization step: 4994. Total energy = 1749.4120 kcal/mol (1748.3487 without restraints) Performing minimization step: 4995. Total energy = 1749.3690 kcal/mol (1748.3056 without restraints) Performing minimization step: 4996. Total energy = 1749.3259 kcal/mol (1748.2622 without restraints) Performing minimization step: 4997. Total energy = 1749.2828 kcal/mol (1748.2191 without restraints) Performing minimization step: 4998. Total energy = 1749.2401 kcal/mol (1748.1763 without restraints) Performing minimization step: 4999. Total energy = 1749.1971 kcal/mol (1748.1332 without restraints) Performing minimization step: 5000. Total energy = 1749.1544 kcal/mol (1748.0905 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2763b75e/tmp/1CDNAOriginalPymol_refx/1CDNAOriginalPymol_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to 1CDNAOriginalPymol_refx.pdb DONE!