============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 735 'H5' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 1H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 740 2H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 768 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 772 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 773 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 800 'H5' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 804 1H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 805 2H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 830 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 835 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 860 'H5' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 864 1H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 865 2H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 887 C5M DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 891 HN3 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 892 1HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 893 2HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 894 3HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 921 'H5' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 925 1H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 926 2H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 948 C5M DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 952 HN3 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 953 1HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 954 2HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 955 3HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 983 'H5' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 987 1H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 988 2H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1010 C5M DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1014 HN3 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1015 1HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1016 2HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1017 3HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1044 'H5' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1048 1H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1049 2H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1074 'H5' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1078 1H2' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1079 2H2' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1101 C5M DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1105 HN3 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1106 1HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1107 2HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1108 3HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1136 'H5' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1140 1H2' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1141 2H2' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1169 'H5' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1173 1H2' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1174 2H2' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1202 'H5' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1206 1H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1207 2H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1234 'H5' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1238 1H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1239 2H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1266 'H5' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1270 1H2' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1271 2H2' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1293 C5M DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1297 HN3 DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1298 1HM5 DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1299 2HM5 DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1300 3HM5 DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1328 'H5' DG A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1332 1H2' DG A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1333 2H2' DG A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1361 'H5' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1365 1H2' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1366 2H2' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1394 'H5' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1398 1H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1399 2H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1424 'H5' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1428 1H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1429 2H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1451 C5M DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1455 HN3 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1456 1HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1457 2HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1458 3HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1485 'H5' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1489 1H2' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1490 2H2' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1518 'H5' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1522 1H2' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1523 2H2' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1545 C5M DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1549 HN3 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1550 1HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1551 2HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1552 3HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1579 'H5' DA A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1583 1H2' DA A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1584 2H2' DA A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1609 'H5' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1613 1H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1614 2H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1641 'H5' DA A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1645 1H2' DA A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1646 2H2' DA A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1668 C5M DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1672 HN3 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1673 1HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1674 2HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1675 3HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1702 'H5' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1706 1H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1707 2H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1734 'H5' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1738 1H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1739 2H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1767 'H5' DG A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1771 1H2' DG A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1772 2H2' DG A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1800 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1804 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1805 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1833 'H5' DG A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1837 1H2' DG A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1838 2H2' DG A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1860 C5M DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1864 HN3 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1865 1HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1866 2HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1867 3HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1892 'H5' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1896 1H2' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1897 2H2' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1925 'H5' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1929 1H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1930 2H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1957 'H5' DA A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1961 1H2' DA A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1962 2H2' DA A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1987 'H5' DC A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1991 1H2' DC A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1992 2H2' DC A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2020 'H5' DG A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2024 1H2' DG A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2025 2H2' DG A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2052 'H5' DA A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2056 1H2' DA A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2057 2H2' DA A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2085 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2089 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2090 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2118 'H5' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2122 1H2' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2123 2H2' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2145 C5M DT A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2149 HN3 DT A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2150 1HM5 DT A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2151 2HM5 DT A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2152 3HM5 DT A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2177 'H5' DC A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2181 1H2' DC A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2182 2H2' DC A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2204 C5M DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2208 HN3 DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2209 1HM5 DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2210 2HM5 DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2211 3HM5 DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2238 'H5' DA A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2242 1H2' DA A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2243 2H2' DA A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2271 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2275 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2276 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2303 'H5' DA A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2307 1H2' DA A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2308 2H2' DA A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2335 'H5' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2339 1H2' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2340 2H2' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2362 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2366 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2367 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2368 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2369 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2396 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2400 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2401 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2426 'H5' DC A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2430 1H2' DC A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2431 2H2' DC A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2456 'H5' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2460 1H2' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2461 2H2' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2488 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2492 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2493 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2521 'H5' DG A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2522 'HO3 DG A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2526 1H2' DG A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2527 2H2' DG A 81 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.159 0.625 -2.625 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.775 -0.874 -0.683 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.224 -0.068 3.650 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.232 -0.107 3.807 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.252 -4.059 4.575 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.594 -3.024 6.775 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.335 -4.590 7.533 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -6.962 -0.953 4.672 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.665 -1.883 1.633 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.556 -0.884 1.210 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.368 -2.457 1.026 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.696 -2.384 1.629 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -3.855 -7.819 7.508 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.789 -6.753 9.156 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.482 -7.024 7.301 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -9.295 -10.741 7.632 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.266 -9.124 6.837 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -12.885 -9.556 4.923 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -14.726 -12.950 4.681 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -17.290 -11.509 1.361 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.658 -11.945 0.292 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -16.765 -15.491 -0.516 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -17.277 -13.823 -4.530 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -15.344 -14.261 -4.788 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -16.406 -17.890 -6.028 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -12.629 -16.336 -8.362 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -13.034 -17.586 -9.533 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -9.696 -13.603 -5.852 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -11.418 -17.104 -3.394 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -11.754 -16.492 -2.555 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -10.426 -17.505 -3.168 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -12.114 -17.934 -3.531 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -12.152 -20.423 -10.908 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -8.308 -19.551 -12.518 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -7.665 -20.303 -10.781 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -7.397 -23.873 -12.188 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -3.183 -22.993 -11.678 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -3.411 -23.682 -9.815 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -2.432 -27.268 -10.585 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 0.850 -26.305 -7.880 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -0.356 -26.921 -6.410 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 0.708 -30.606 -6.604 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 -0.590 -28.954 -2.368 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 0.321 -30.308 -1.710 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -4.481 -27.457 -1.288 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -4.564 -29.081 -5.608 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -5.197 -28.292 -6.015 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -5.186 -29.937 -5.336 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -3.843 -29.390 -6.365 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 1.051 -33.905 -1.176 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 -2.405 -32.672 1.594 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 -1.864 -33.967 2.655 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -6.367 -31.131 0.950 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -4.392 -31.754 -3.141 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -4.500 -30.741 -3.529 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -5.239 -32.359 -3.470 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -3.469 -32.190 -3.525 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 -2.224 -37.674 3.270 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -5.959 -36.726 5.656 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -6.910 -36.936 3.910 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -7.517 -41.074 4.563 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -11.893 -40.451 4.903 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -11.807 -40.567 2.909 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -12.560 -44.441 3.051 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -16.358 -43.529 0.741 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -15.149 -43.686 -0.843 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -15.884 -47.248 -1.283 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -18.028 -45.800 -4.803 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -16.296 -46.175 -5.728 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -17.069 -49.693 -6.818 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -16.421 -48.145 -10.796 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -14.519 -48.709 -10.549 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -14.691 -52.232 -12.012 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -11.688 -50.779 -14.766 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -10.344 -51.407 -13.425 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -9.769 -54.955 -14.792 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -5.666 -53.695 -15.257 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -5.388 -54.351 -13.389 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -4.399 -58.049 -14.215 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -0.680 -56.692 -12.426 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -1.453 -57.242 -10.666 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 0.468 -60.838 -11.191 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 1.315 -58.804 -6.965 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 -0.301 -59.738 -6.250 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 2.484 -62.230 -4.963 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 1.484 -60.315 -1.244 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 -0.111 -61.520 -1.220 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 2.087 -64.426 1.056 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -1.599 -63.758 3.776 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 -2.621 -64.872 2.467 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 24 -2.569 -68.439 3.755 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 24 -4.694 -68.143 7.068 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 24 -5.496 -69.258 5.616 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 -5.337 -72.835 5.140 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -8.899 -73.008 6.777 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -8.937 -73.453 4.829 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 26 -9.248 -78.202 4.895 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 26 -12.159 -78.920 2.107 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 26 -10.638 -78.615 0.846 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 -10.300 -82.417 0.606 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 -11.316 -81.951 -3.699 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 -9.376 -81.510 -3.898 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 28 -8.558 -85.640 -4.612 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 28 -6.987 -84.445 -8.628 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 28 -5.301 -83.968 -7.665 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 29 -5.148 -88.028 -9.003 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 29 -1.762 -85.070 -10.626 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 29 -1.141 -86.541 -11.366 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 29 0.379 -82.206 -7.931 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 29 -3.157 -83.999 -5.532 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 29 -3.672 -83.066 -5.322 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 29 -2.501 -84.254 -4.703 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 29 -3.882 -84.794 -5.686 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 30 0.414 -88.522 -8.950 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 30 2.839 -87.862 -10.999 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 30 3.750 -86.814 -9.560 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 31 6.352 -89.670 -9.826 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 31 8.505 -86.098 -8.376 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 31 9.915 -87.119 -8.631 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 31 7.503 -83.710 -4.957 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 31 4.432 -87.135 -5.250 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 31 3.535 -86.526 -5.122 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 31 4.728 -87.543 -4.279 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 31 4.205 -87.963 -5.926 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 32 12.361 -89.353 -7.785 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 32 14.197 -85.668 -5.918 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 32 13.205 -86.076 -4.231 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 33 16.547 -88.521 -3.071 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 33 14.324 -86.002 0.083 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 33 15.751 -86.140 1.103 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 33 10.284 -86.001 1.610 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 33 11.094 -89.536 -1.268 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 33 10.229 -89.384 -1.909 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 33 10.855 -90.263 -0.493 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 33 11.931 -89.896 -1.861 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 34 18.237 -87.619 3.193 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 34 15.782 -85.024 6.162 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 34 14.632 -86.621 6.514 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 35 17.216 -88.131 10.228 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 35 12.865 -88.211 11.840 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 35 12.584 -89.842 10.719 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 36 13.931 -91.762 14.160 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 36 10.054 -93.626 12.500 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 36 10.011 -94.501 14.025 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 36 9.635 -95.304 8.560 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 36 13.528 -92.872 8.661 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 36 13.335 -92.316 7.745 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 36 14.140 -93.746 8.435 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 36 14.056 -92.235 9.369 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 37 10.787 -97.046 15.908 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 37 7.178 -98.763 14.081 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 37 8.449 -99.769 12.909 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 38 10.925-102.109 13.290 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 38 7.939-104.853 11.036 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 38 9.655-104.924 10.013 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 39 11.551-107.772 10.342 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 39 9.787-107.884 7.641 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 39 11.664-107.682 6.983 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 40 14.550-110.018 6.973 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 40 16.120-107.292 6.323 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 40 17.231-107.906 7.867 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 41 18.831-112.788 7.779 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 41 21.956-113.930 8.436 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 41 21.596-114.933 6.744 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 42 21.803-110.051 6.564 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 42 22.444-109.093 8.232 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 42 23.288-107.556 8.371 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 42 19.565-103.444 8.504 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 42 19.126-107.276 11.010 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 42 18.061-107.430 10.846 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 42 19.277-106.744 11.950 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 42 19.630-108.240 11.054 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 43 25.202-108.656 3.214 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 43 21.280-106.768 2.174 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 43 21.585-105.428 3.626 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 44 21.686-102.282 -0.051 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 44 20.103 -98.633 0.775 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 44 21.894 -97.915 1.296 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 45 20.617-102.396 -3.428 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 45 17.357-105.619 -2.111 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 45 16.422-104.325 -0.907 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 46 13.775-101.927 -1.471 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 46 10.900-105.233 0.157 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 46 10.732-103.455 1.053 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 47 7.450-102.302 -1.180 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 47 7.868-100.846 3.484 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 47 6.160-100.438 3.385 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 47 11.884 -99.139 5.050 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 47 11.597 -98.872 0.437 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 47 12.552 -99.357 0.221 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 47 11.740 -97.787 0.433 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 47 10.880 -99.137 -0.343 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 48 3.270 -98.827 2.708 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 48 1.954 -98.196 6.875 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 48 3.242 -96.672 6.738 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 49 0.755 -94.101 5.644 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 49 1.999 -92.278 9.312 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 49 3.275 -91.255 8.162 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 50 0.815 -88.482 8.234 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 50 5.274 -87.063 8.375 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 50 4.547 -85.512 8.778 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 50 8.067 -87.935 5.151 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 50 4.214 -90.301 4.265 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 50 4.704 -91.244 4.023 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 50 4.022 -89.747 3.344 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 50 3.266 -90.505 4.764 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 51 3.109 -82.437 8.087 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 51 7.462 -81.399 7.321 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 51 7.173 -81.844 5.393 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 52 6.827 -78.086 4.778 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 52 10.559 -77.678 2.630 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 52 9.481 -78.427 1.122 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 53 9.005 -74.750 -0.045 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 53 11.352 -76.712 -3.447 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 53 9.618 -77.467 -4.097 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 54 9.085 -73.830 -6.181 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 54 7.781 -77.728 -8.630 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 54 7.778 -76.697 -10.055 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 54 4.594 -80.458 -7.412 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 54 5.490 -77.512 -3.955 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 54 5.648 -78.281 -3.200 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 54 4.463 -77.149 -3.895 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 54 6.177 -76.685 -3.780 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 55 6.080 -74.669 -12.091 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 55 4.429 -78.205 -14.111 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 55 2.822 -77.922 -12.956 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 56 4.235 -73.843 -11.756 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 56 3.490 -69.878 -14.286 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 56 1.945 -70.094 -13.035 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 57 4.985 -71.025 -8.895 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 57 6.744 -71.752 -5.151 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 57 4.966 -71.064 -4.550 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 2.266 -73.147 -9.292 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 0.100 -75.438 -12.095 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 -1.071 -75.615 -10.484 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 59 -3.175 -72.825 -11.843 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 59 -6.665 -75.212 -12.492 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 59 -7.207 -74.572 -10.676 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 60 -8.330 -70.279 -10.203 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 60 -9.865 -73.728 -7.898 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 60 -11.543 -73.683 -8.425 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 60 -8.530 -74.021 -4.053 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 60 -4.970 -72.172 -6.256 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 60 -4.256 -72.980 -6.118 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 60 -4.847 -71.435 -5.462 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 60 -4.804 -71.698 -7.221 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 61 -12.521 -69.629 -6.414 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 61 -14.594 -71.931 -3.363 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 61 -13.486 -70.406 -2.697 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 62 -17.064 -66.843 -2.295 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 62 -16.202 -66.482 2.065 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 62 -14.419 -65.836 1.432 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 63 -15.798 -62.381 1.748 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 63 -13.088 -62.239 5.165 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 63 -11.712 -61.586 3.870 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 64 -12.219 -57.763 4.506 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 64 -7.785 -57.775 4.563 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 64 -7.866 -57.599 2.574 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 65 -7.461 -53.875 3.295 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 65 -3.196 -54.729 2.033 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 65 -3.980 -54.590 0.199 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 66 -7.115 -49.126 1.939 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 66 -8.465 -47.238 5.356 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 66 -6.631 -47.696 6.006 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -4.434 -44.442 4.994 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -2.160 -44.831 8.459 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -0.846 -45.736 7.255 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 68 1.555 -43.125 6.648 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 68 4.192 -45.339 8.948 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 68 4.656 -46.236 7.223 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 69 7.568 -43.469 7.708 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 69 9.566 -47.077 6.232 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 69 11.053 -46.172 6.487 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 69 8.484 -49.772 3.057 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 69 5.409 -46.416 3.227 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 69 4.504 -47.018 3.322 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 69 5.589 -46.202 2.171 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 69 5.270 -45.475 3.763 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 70 13.465 -43.937 5.348 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 70 15.368 -47.452 3.481 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 70 14.326 -47.035 1.826 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 71 17.397 -45.166 0.497 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 71 14.188 -47.016 -2.693 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 71 15.326 -46.432 -3.901 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 71 9.989 -46.437 -2.932 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 71 11.586 -43.842 0.563 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 71 10.906 -44.220 1.316 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 71 11.188 -42.941 0.110 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 71 12.558 -43.646 0.998 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 72 15.474 -43.199 -3.875 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 72 17.941 -42.356 -6.307 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 72 18.162 -44.193 -5.549 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 13.261 -42.313 -8.248 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 10.892 -45.371 -9.816 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 10.491 -44.840 -7.931 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 74 7.645 -42.661 -6.246 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 74 5.074 -41.835 -5.995 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 74 5.118 -43.472 -7.141 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 75 5.116 -47.347 -6.678 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 75 6.276 -49.703 -10.038 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 75 7.651 -50.396 -8.763 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 5.867 -53.531 -7.336 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 10.134 -53.081 -4.916 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 10.032 -54.817 -4.650 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 11.108 -49.983 -2.058 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 6.804 -49.333 -3.523 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 6.940 -48.294 -3.795 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 6.435 -49.412 -2.506 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 6.120 -49.816 -4.209 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 9.318 -57.765 -3.014 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 12.553 -55.811 -0.196 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 11.042 -55.130 0.922 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 78 8.737 -56.606 2.949 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 78 9.749 -54.184 6.197 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 78 7.790 -53.979 5.856 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 79 5.725 -55.272 8.669 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 79 7.112 -51.697 11.009 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 79 5.126 -51.599 10.806 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 4.749 -54.958 15.190 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 1.871 -51.048 15.666 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 0.454 -51.901 14.543 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 81 -1.296 -52.797 17.938 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 81 -4.503 -50.367 15.586 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 81 -5.053 -52.021 14.607 1.00 0.00 H Number of atoms: 2579 Number of residues: 81 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2788 Number of angles built: 5057 Number of dihedrals built: 7561 Number of impropers built: 557 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3316486 Number of van der Waals pairs: 287389 Number of H-bonds built: 50 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 12 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 132364.1538 kcal/mol (131962.1985 without restraints) Performing minimization step: 2. Total energy = 129149.9449 kcal/mol (128766.9369 without restraints) Performing minimization step: 3. Total energy = 126090.1531 kcal/mol (125724.6667 without restraints) Performing minimization step: 4. Total energy = 123173.2883 kcal/mol (122824.0348 without restraints) Performing minimization step: 5. Total energy = 120388.9617 kcal/mol (120054.7755 without restraints) Performing minimization step: 6. Total energy = 117727.7709 kcal/mol (117407.5965 without restraints) Performing minimization step: 7. Total energy = 115181.1971 kcal/mol (114874.0776 without restraints) Performing minimization step: 8. Total energy = 112741.5125 kcal/mol (112446.5795 without restraints) Performing minimization step: 9. Total energy = 110401.6967 kcal/mol (110118.1605 without restraints) Performing minimization step: 10. Total energy = 108155.3622 kcal/mol (107882.5037 without restraints) Performing minimization step: 11. Total energy = 105996.6879 kcal/mol (105733.8512 without restraints) Performing minimization step: 12. Total energy = 103920.3598 kcal/mol (103666.9457 without restraints) Performing minimization step: 13. Total energy = 101921.5183 kcal/mol (101676.9784 without restraints) Performing minimization step: 14. Total energy = 99995.7111 kcal/mol (99759.5422 without restraints) Performing minimization step: 15. Total energy = 98138.8510 kcal/mol (97910.5909 without restraints) Performing minimization step: 16. Total energy = 96347.1794 kcal/mol (96126.4028 without restraints) Performing minimization step: 17. Total energy = 94617.2331 kcal/mol (94403.5474 without restraints) Performing minimization step: 18. Total energy = 92945.8149 kcal/mol (92738.8576 without restraints) Performing minimization step: 19. Total energy = 91329.9678 kcal/mol (91129.4031 without restraints) Performing minimization step: 20. Total energy = 89766.9515 kcal/mol (89572.4681 without restraints) Performing minimization step: 21. Total energy = 88254.2225 kcal/mol (88065.5311 without restraints) Performing minimization step: 22. Total energy = 86789.4151 kcal/mol (86606.2464 without restraints) Performing minimization step: 23. Total energy = 85370.3254 kcal/mol (85192.4282 without restraints) Performing minimization step: 24. Total energy = 83994.8967 kcal/mol (83822.0364 without restraints) Performing minimization step: 25. Total energy = 82661.2062 kcal/mol (82493.1635 without restraints) Performing minimization step: 26. Total energy = 81367.4540 kcal/mol (81204.0232 without restraints) Performing minimization step: 27. Total energy = 80111.9519 kcal/mol (79952.9401 without restraints) Performing minimization step: 28. Total energy = 78893.1146 kcal/mol (78738.3404 without restraints) Performing minimization step: 29. Total energy = 77709.4509 kcal/mol (77558.7436 without restraints) Performing minimization step: 30. Total energy = 76559.5565 kcal/mol (76412.7551 without restraints) Performing minimization step: 31. Total energy = 75442.1066 kcal/mol (75299.0594 without restraints) Performing minimization step: 32. Total energy = 74355.8505 kcal/mol (74216.4139 without restraints) Performing minimization step: 33. Total energy = 73299.6053 kcal/mol (73163.6436 without restraints) Performing minimization step: 34. Total energy = 72272.2512 kcal/mol (72139.6357 without restraints) Performing minimization step: 35. Total energy = 71272.7270 kcal/mol (71143.3357 without restraints) Performing minimization step: 36. Total energy = 70300.0254 kcal/mol (70173.7426 without restraints) Performing minimization step: 37. Total energy = 69353.1906 kcal/mol (69229.9062 without restraints) Performing minimization step: 38. Total energy = 68431.3117 kcal/mol (68310.9210 without restraints) Performing minimization step: 39. Total energy = 67533.5238 kcal/mol (67415.9271 without restraints) Performing minimization step: 40. Total energy = 66659.0016 kcal/mol (66544.1039 without restraints) Performing minimization step: 41. Total energy = 65806.9589 kcal/mol (65694.6694 without restraints) Performing minimization step: 42. Total energy = 64976.6452 kcal/mol (64866.8774 without restraints) Performing minimization step: 43. Total energy = 64167.3430 kcal/mol (64060.0142 without restraints) Performing minimization step: 44. Total energy = 63378.3671 kcal/mol (63273.3982 without restraints) Performing minimization step: 45. Total energy = 62609.0616 kcal/mol (62506.3769 without restraints) Performing minimization step: 46. Total energy = 61858.7988 kcal/mol (61758.3258 without restraints) Performing minimization step: 47. Total energy = 61126.9770 kcal/mol (61028.6461 without restraints) Performing minimization step: 48. Total energy = 60413.0195 kcal/mol (60316.7640 without restraints) Performing minimization step: 49. Total energy = 59716.3729 kcal/mol (59622.1290 without restraints) Performing minimization step: 50. Total energy = 59036.5061 kcal/mol (58944.2123 without restraints) Performing minimization step: 51. Total energy = 58372.9089 kcal/mol (58282.5061 without restraints) Performing minimization step: 52. Total energy = 57725.0907 kcal/mol (57636.5223 without restraints) Performing minimization step: 53. Total energy = 57092.5802 kcal/mol (57005.7915 without restraints) Performing minimization step: 54. Total energy = 56474.9236 kcal/mol (56389.8620 without restraints) Performing minimization step: 55. Total energy = 55871.6841 kcal/mol (55788.2991 without restraints) Performing minimization step: 56. Total energy = 55282.4412 kcal/mol (55200.6841 without restraints) Performing minimization step: 57. Total energy = 54706.7894 kcal/mol (54626.6133 without restraints) Performing minimization step: 58. Total energy = 54144.3383 kcal/mol (54065.6977 without restraints) Performing minimization step: 59. Total energy = 53594.7108 kcal/mol (53517.5623 without restraints) Performing minimization step: 60. Total energy = 53057.5436 kcal/mol (52981.8448 without restraints) Performing minimization step: 61. Total energy = 52532.4859 kcal/mol (52458.1963 without restraints) Performing minimization step: 62. Total energy = 52019.1987 kcal/mol (51946.2791 without restraints) Performing minimization step: 63. Total energy = 51517.3555 kcal/mol (51445.7678 without restraints) Performing minimization step: 64. Total energy = 51026.6394 kcal/mol (50956.3469 without restraints) Performing minimization step: 65. Total energy = 50546.7459 kcal/mol (50477.7133 without restraints) Performing minimization step: 66. Total energy = 50077.3791 kcal/mol (50009.5719 without restraints) Performing minimization step: 67. Total energy = 49618.2530 kcal/mol (49551.6382 without restraints) Performing minimization step: 68. Total energy = 49169.0917 kcal/mol (49103.6372 without restraints) Performing minimization step: 69. Total energy = 48729.6277 kcal/mol (48665.3025 without restraints) Performing minimization step: 70. Total energy = 48299.6022 kcal/mol (48236.3762 without restraints) Performing minimization step: 71. Total energy = 47878.7645 kcal/mol (47816.6086 without restraints) Performing minimization step: 72. Total energy = 47466.8721 kcal/mol (47405.7580 without restraints) Performing minimization step: 73. Total energy = 47063.6897 kcal/mol (47003.5903 without restraints) Performing minimization step: 74. Total energy = 46668.9897 kcal/mol (46609.8784 without restraints) Performing minimization step: 75. Total energy = 46282.5512 kcal/mol (46224.4024 without restraints) Performing minimization step: 76. Total energy = 45904.1604 kcal/mol (45846.9492 without restraints) Performing minimization step: 77. Total energy = 45533.6097 kcal/mol (45477.3120 without restraints) Performing minimization step: 78. Total energy = 45170.6980 kcal/mol (45115.2905 without restraints) Performing minimization step: 79. Total energy = 44815.2301 kcal/mol (44760.6900 without restraints) Performing minimization step: 80. Total energy = 44467.0168 kcal/mol (44413.3221 without restraints) Performing minimization step: 81. Total energy = 44125.8742 kcal/mol (44073.0037 without restraints) Performing minimization step: 82. Total energy = 43791.6240 kcal/mol (43739.5568 without restraints) Performing minimization step: 83. Total energy = 43464.0935 kcal/mol (43412.8096 without restraints) Performing minimization step: 84. Total energy = 43143.1145 kcal/mol (43092.5942 without restraints) Performing minimization step: 85. Total energy = 42828.5238 kcal/mol (42778.7482 without restraints) Performing minimization step: 86. Total energy = 42520.1630 kcal/mol (42471.1137 without restraints) Performing minimization step: 87. Total energy = 42217.8781 kcal/mol (42169.5372 without restraints) Performing minimization step: 88. Total energy = 41921.5197 kcal/mol (41873.8698 without restraints) Performing minimization step: 89. Total energy = 41630.9425 kcal/mol (41583.9667 without restraints) Performing minimization step: 90. Total energy = 41346.0050 kcal/mol (41299.6869 without restraints) Performing minimization step: 91. Total energy = 41066.5704 kcal/mol (41020.8940 without restraints) Performing minimization step: 92. Total energy = 40792.5052 kcal/mol (40747.4550 without restraints) Performing minimization step: 93. Total energy = 40523.6796 kcal/mol (40479.2405 without restraints) Performing minimization step: 94. Total energy = 40259.9676 kcal/mol (40216.1248 without restraints) Performing minimization step: 95. Total energy = 40001.2465 kcal/mol (39957.9860 without restraints) Performing minimization step: 96. Total energy = 39747.3969 kcal/mol (39704.7045 without restraints) Performing minimization step: 97. Total energy = 39498.3027 kcal/mol (39456.1651 without restraints) Performing minimization step: 98. Total energy = 39253.8511 kcal/mol (39212.2552 without restraints) Performing minimization step: 99. Total energy = 39013.9323 kcal/mol (38972.8652 without restraints) Performing minimization step: 100. Total energy = 38778.4393 kcal/mol (38737.8885 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 101. Total energy = 38547.2680 kcal/mol (38507.2215 without restraints) Performing minimization step: 102. Total energy = 38320.3173 kcal/mol (38280.7632 without restraints) Performing minimization step: 103. Total energy = 38097.4883 kcal/mol (38058.4152 without restraints) Performing minimization step: 104. Total energy = 37878.6852 kcal/mol (37840.0819 without restraints) Performing minimization step: 105. Total energy = 37663.8147 kcal/mol (37625.6705 without restraints) Performing minimization step: 106. Total energy = 37452.7852 kcal/mol (37415.0891 without restraints) Performing minimization step: 107. Total energy = 37245.5083 kcal/mol (37208.2503 without restraints) Performing minimization step: 108. Total energy = 37041.8978 kcal/mol (37005.0677 without restraints) Performing minimization step: 109. Total energy = 36841.8693 kcal/mol (36805.4574 without restraints) Performing minimization step: 110. Total energy = 36645.3410 kcal/mol (36609.3376 without restraints) Performing minimization step: 111. Total energy = 36452.2329 kcal/mol (36416.6288 without restraints) Performing minimization step: 112. Total energy = 36262.4669 kcal/mol (36227.2531 without restraints) Performing minimization step: 113. Total energy = 36075.9680 kcal/mol (36041.1355 without restraints) Performing minimization step: 114. Total energy = 35892.6615 kcal/mol (35858.2018 without restraints) Performing minimization step: 115. Total energy = 35712.4755 kcal/mol (35678.3802 without restraints) Performing minimization step: 116. Total energy = 35535.3397 kcal/mol (35501.6006 without restraints) Performing minimization step: 117. Total energy = 35361.1857 kcal/mol (35327.7947 without restraints) Performing minimization step: 118. Total energy = 35189.9466 kcal/mol (35156.8961 without restraints) Performing minimization step: 119. Total energy = 35021.5572 kcal/mol (34988.8395 without restraints) Performing minimization step: 120. Total energy = 34855.9543 kcal/mol (34823.5621 without restraints) Performing minimization step: 121. Total energy = 34693.0757 kcal/mol (34661.0017 without restraints) Performing minimization step: 122. Total energy = 34532.8612 kcal/mol (34501.0984 without restraints) Performing minimization step: 123. Total energy = 34375.2517 kcal/mol (34343.7933 without restraints) Performing minimization step: 124. Total energy = 34220.1898 kcal/mol (34189.0289 without restraints) Performing minimization step: 125. Total energy = 34067.6197 kcal/mol (34036.7500 without restraints) Performing minimization step: 126. Total energy = 33917.4859 kcal/mol (33886.9009 without restraints) Performing minimization step: 127. Total energy = 33769.7355 kcal/mol (33739.4290 without restraints) Performing minimization step: 128. Total energy = 33624.3164 kcal/mol (33594.2823 without restraints) Performing minimization step: 129. Total energy = 33481.1774 kcal/mol (33451.4098 without restraints) Performing minimization step: 130. Total energy = 33340.2694 kcal/mol (33310.7625 without restraints) Performing minimization step: 131. Total energy = 33201.5437 kcal/mol (33172.2919 without restraints) Performing minimization step: 132. Total energy = 33064.9531 kcal/mol (33035.9508 without restraints) Performing minimization step: 133. Total energy = 32930.4515 kcal/mol (32901.6935 without restraints) Performing minimization step: 134. Total energy = 32797.9938 kcal/mol (32769.4747 without restraints) Performing minimization step: 135. Total energy = 32667.5358 kcal/mol (32639.2505 without restraints) Performing minimization step: 136. Total energy = 32539.0345 kcal/mol (32510.9781 without restraints) Performing minimization step: 137. Total energy = 32412.4487 kcal/mol (32384.6162 without restraints) Performing minimization step: 138. Total energy = 32287.7367 kcal/mol (32260.1232 without restraints) Performing minimization step: 139. Total energy = 32164.8588 kcal/mol (32137.4599 without restraints) Performing minimization step: 140. Total energy = 32043.7760 kcal/mol (32016.5871 without restraints) Performing minimization step: 141. Total energy = 31924.4497 kcal/mol (31897.4663 without restraints) Performing minimization step: 142. Total energy = 31806.8438 kcal/mol (31780.0618 without restraints) Performing minimization step: 143. Total energy = 31690.9213 kcal/mol (31664.3360 without restraints) Performing minimization step: 144. Total energy = 31576.6464 kcal/mol (31550.2539 without restraints) Performing minimization step: 145. Total energy = 31463.9846 kcal/mol (31437.7809 without restraints) Performing minimization step: 146. Total energy = 31352.9019 kcal/mol (31326.8830 without restraints) Performing minimization step: 147. Total energy = 31243.3654 kcal/mol (31217.5274 without restraints) Performing minimization step: 148. Total energy = 31135.3426 kcal/mol (31109.6818 without restraints) Performing minimization step: 149. Total energy = 31028.8023 kcal/mol (31003.3150 without restraints) Performing minimization step: 150. Total energy = 30923.7133 kcal/mol (30898.3959 without restraints) Performing minimization step: 151. Total energy = 30820.0455 kcal/mol (30794.8945 without restraints) Performing minimization step: 152. Total energy = 30717.7696 kcal/mol (30692.7815 without restraints) Performing minimization step: 153. Total energy = 30616.8564 kcal/mol (30592.0279 without restraints) Performing minimization step: 154. Total energy = 30517.2781 kcal/mol (30492.6060 without restraints) Performing minimization step: 155. Total energy = 30419.0072 kcal/mol (30394.4882 without restraints) Performing minimization step: 156. Total energy = 30322.0165 kcal/mol (30297.6475 without restraints) Performing minimization step: 157. Total energy = 30226.2800 kcal/mol (30202.0581 without restraints) Performing minimization step: 158. Total energy = 30131.7723 kcal/mol (30107.6943 without restraints) Performing minimization step: 159. Total energy = 30038.4676 kcal/mol (30014.5305 without restraints) Performing minimization step: 160. Total energy = 29946.3420 kcal/mol (29922.5431 without restraints) Performing minimization step: 161. Total energy = 29855.3711 kcal/mol (29831.7076 without restraints) Performing minimization step: 162. Total energy = 29765.5317 kcal/mol (29742.0009 without restraints) Performing minimization step: 163. Total energy = 29676.8011 kcal/mol (29653.4001 without restraints) Performing minimization step: 164. Total energy = 29589.1571 kcal/mol (29565.8837 without restraints) Performing minimization step: 165. Total energy = 29502.5774 kcal/mol (29479.4288 without restraints) Performing minimization step: 166. Total energy = 29417.0403 kcal/mol (29394.0141 without restraints) Performing minimization step: 167. Total energy = 29332.5258 kcal/mol (29309.6194 without restraints) Performing minimization step: 168. Total energy = 29249.0133 kcal/mol (29226.2245 without restraints) Performing minimization step: 169. Total energy = 29166.4822 kcal/mol (29143.8086 without restraints) Performing minimization step: 170. Total energy = 29084.9136 kcal/mol (29062.3531 without restraints) Performing minimization step: 171. Total energy = 29004.2880 kcal/mol (28981.8381 without restraints) Performing minimization step: 172. Total energy = 28924.5868 kcal/mol (28902.2455 without restraints) Performing minimization step: 173. Total energy = 28845.7919 kcal/mol (28823.5569 without restraints) Performing minimization step: 174. Total energy = 28767.8853 kcal/mol (28745.7547 without restraints) Performing minimization step: 175. Total energy = 28690.8493 kcal/mol (28668.8209 without restraints) Performing minimization step: 176. Total energy = 28614.6674 kcal/mol (28592.7395 without restraints) Performing minimization step: 177. Total energy = 28539.3229 kcal/mol (28517.4934 without restraints) Performing minimization step: 178. Total energy = 28464.7994 kcal/mol (28443.0664 without restraints) Performing minimization step: 179. Total energy = 28391.0810 kcal/mol (28369.4426 without restraints) Performing minimization step: 180. Total energy = 28318.1519 kcal/mol (28296.6064 without restraints) Performing minimization step: 181. Total energy = 28245.9976 kcal/mol (28224.5432 without restraints) Performing minimization step: 182. Total energy = 28174.6020 kcal/mol (28153.2368 without restraints) Performing minimization step: 183. Total energy = 28103.9509 kcal/mol (28082.6732 without restraints) Performing minimization step: 184. Total energy = 28034.0305 kcal/mol (28012.8390 without restraints) Performing minimization step: 185. Total energy = 27964.8269 kcal/mol (27943.7197 without restraints) Performing minimization step: 186. Total energy = 27896.3260 kcal/mol (27875.3016 without restraints) Performing minimization step: 187. Total energy = 27828.5148 kcal/mol (27807.5716 without restraints) Performing minimization step: 188. Total energy = 27761.3798 kcal/mol (27740.5164 without restraints) Performing minimization step: 189. Total energy = 27694.9089 kcal/mol (27674.1236 without restraints) Performing minimization step: 190. Total energy = 27629.0892 kcal/mol (27608.3808 without restraints) Performing minimization step: 191. Total energy = 27563.9091 kcal/mol (27543.2760 without restraints) Performing minimization step: 192. Total energy = 27499.3559 kcal/mol (27478.7968 without restraints) Performing minimization step: 193. Total energy = 27435.4182 kcal/mol (27414.9317 without restraints) Performing minimization step: 194. Total energy = 27372.0847 kcal/mol (27351.6695 without restraints) Performing minimization step: 195. Total energy = 27309.3446 kcal/mol (27288.9994 without restraints) Performing minimization step: 196. Total energy = 27247.1862 kcal/mol (27226.9097 without restraints) Performing minimization step: 197. Total energy = 27185.5993 kcal/mol (27165.3902 without restraints) Performing minimization step: 198. Total energy = 27124.5734 kcal/mol (27104.4307 without restraints) Performing minimization step: 199. Total energy = 27064.0984 kcal/mol (27044.0209 without restraints) Performing minimization step: 200. Total energy = 27004.1642 kcal/mol (26984.1506 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 201. Total energy = 26944.7609 kcal/mol (26924.8099 without restraints) Performing minimization step: 202. Total energy = 26885.8791 kcal/mol (26865.9899 without restraints) Performing minimization step: 203. Total energy = 26827.5095 kcal/mol (26807.6809 without restraints) Performing minimization step: 204. Total energy = 26769.6425 kcal/mol (26749.8734 without restraints) Performing minimization step: 205. Total energy = 26712.2698 kcal/mol (26692.5592 without restraints) Performing minimization step: 206. Total energy = 26655.3828 kcal/mol (26635.7297 without restraints) Performing minimization step: 207. Total energy = 26598.9728 kcal/mol (26579.3763 without restraints) Performing minimization step: 208. Total energy = 26543.0310 kcal/mol (26523.4899 without restraints) Performing minimization step: 209. Total energy = 26487.5487 kcal/mol (26468.0623 without restraints) Performing minimization step: 210. Total energy = 26432.5191 kcal/mol (26413.0863 without restraints) Performing minimization step: 211. Total energy = 26377.9338 kcal/mol (26358.5537 without restraints) Performing minimization step: 212. Total energy = 26323.7851 kcal/mol (26304.4569 without restraints) Performing minimization step: 213. Total energy = 26270.0658 kcal/mol (26250.7884 without restraints) Performing minimization step: 214. Total energy = 26216.7681 kcal/mol (26197.5409 without restraints) Performing minimization step: 215. Total energy = 26163.8855 kcal/mol (26144.7077 without restraints) Performing minimization step: 216. Total energy = 26111.4101 kcal/mol (26092.2806 without restraints) Performing minimization step: 217. Total energy = 26059.3357 kcal/mol (26040.2539 without restraints) Performing minimization step: 218. Total energy = 26007.6550 kcal/mol (25988.6202 without restraints) Performing minimization step: 219. Total energy = 25956.3615 kcal/mol (25937.3728 without restraints) Performing minimization step: 220. Total energy = 25905.4493 kcal/mol (25886.5060 without restraints) Performing minimization step: 221. Total energy = 25854.9113 kcal/mol (25836.0126 without restraints) Performing minimization step: 222. Total energy = 25804.7417 kcal/mol (25785.8870 without restraints) Performing minimization step: 223. Total energy = 25754.9351 kcal/mol (25736.1236 without restraints) Performing minimization step: 224. Total energy = 25705.4852 kcal/mol (25686.7162 without restraints) Performing minimization step: 225. Total energy = 25656.3858 kcal/mol (25637.6587 without restraints) Performing minimization step: 226. Total energy = 25607.6315 kcal/mol (25588.9457 without restraints) Performing minimization step: 227. Total energy = 25559.2168 kcal/mol (25540.5716 without restraints) Performing minimization step: 228. Total energy = 25511.1361 kcal/mol (25492.5309 without restraints) Performing minimization step: 229. Total energy = 25463.3843 kcal/mol (25444.8184 without restraints) Performing minimization step: 230. Total energy = 25415.9561 kcal/mol (25397.4289 without restraints) Performing minimization step: 231. Total energy = 25368.8463 kcal/mol (25350.3572 without restraints) Performing minimization step: 232. Total energy = 25322.0501 kcal/mol (25303.5986 without restraints) Performing minimization step: 233. Total energy = 25275.5627 kcal/mol (25257.1482 without restraints) Performing minimization step: 234. Total energy = 25229.3789 kcal/mol (25211.0008 without restraints) Performing minimization step: 235. Total energy = 25183.4940 kcal/mol (25165.1518 without restraints) Performing minimization step: 236. Total energy = 25137.9039 kcal/mol (25119.5972 without restraints) Performing minimization step: 237. Total energy = 25092.6039 kcal/mol (25074.3317 without restraints) Performing minimization step: 238. Total energy = 25047.5895 kcal/mol (25029.3519 without restraints) Performing minimization step: 239. Total energy = 25002.8568 kcal/mol (24984.6531 without restraints) Performing minimization step: 240. Total energy = 24958.4016 kcal/mol (24940.2312 without restraints) Performing minimization step: 241. Total energy = 24914.2191 kcal/mol (24896.0817 without restraints) Performing minimization step: 242. Total energy = 24870.3057 kcal/mol (24852.2007 without restraints) Performing minimization step: 243. Total energy = 24826.6571 kcal/mol (24808.5838 without restraints) Performing minimization step: 244. Total energy = 24783.2697 kcal/mol (24765.2280 without restraints) Performing minimization step: 245. Total energy = 24740.1400 kcal/mol (24722.1296 without restraints) Performing minimization step: 246. Total energy = 24697.2640 kcal/mol (24679.2842 without restraints) Performing minimization step: 247. Total energy = 24654.6380 kcal/mol (24636.6884 without restraints) Performing minimization step: 248. Total energy = 24612.2585 kcal/mol (24594.3387 without restraints) Performing minimization step: 249. Total energy = 24570.1218 kcal/mol (24552.2314 without restraints) Performing minimization step: 250. Total energy = 24528.2246 kcal/mol (24510.3632 without restraints) Performing minimization step: 251. Total energy = 24486.5637 kcal/mol (24468.7310 without restraints) Performing minimization step: 252. Total energy = 24445.1358 kcal/mol (24427.3313 without restraints) Performing minimization step: 253. Total energy = 24403.9377 kcal/mol (24386.1612 without restraints) Performing minimization step: 254. Total energy = 24362.9662 kcal/mol (24345.2171 without restraints) Performing minimization step: 255. Total energy = 24322.2179 kcal/mol (24304.4960 without restraints) Performing minimization step: 256. Total energy = 24281.6906 kcal/mol (24263.9955 without restraints) Performing minimization step: 257. Total energy = 24241.3806 kcal/mol (24223.7119 without restraints) Performing minimization step: 258. Total energy = 24201.2847 kcal/mol (24183.6422 without restraints) Performing minimization step: 259. Total energy = 24161.4002 kcal/mol (24143.7835 without restraints) Performing minimization step: 260. Total energy = 24121.7250 kcal/mol (24104.1337 without restraints) Performing minimization step: 261. Total energy = 24082.2554 kcal/mol (24064.6893 without restraints) Performing minimization step: 262. Total energy = 24042.9896 kcal/mol (24025.4484 without restraints) Performing minimization step: 263. Total energy = 24003.9243 kcal/mol (23986.4075 without restraints) Performing minimization step: 264. Total energy = 23965.0572 kcal/mol (23947.5647 without restraints) Performing minimization step: 265. Total energy = 23926.3858 kcal/mol (23908.9172 without restraints) Performing minimization step: 266. Total energy = 23887.9073 kcal/mol (23870.4624 without restraints) Performing minimization step: 267. Total energy = 23849.6200 kcal/mol (23832.1985 without restraints) Performing minimization step: 268. Total energy = 23811.5210 kcal/mol (23794.1227 without restraints) Performing minimization step: 269. Total energy = 23773.6086 kcal/mol (23756.2330 without restraints) Performing minimization step: 270. Total energy = 23735.8789 kcal/mol (23718.5260 without restraints) Performing minimization step: 271. Total energy = 23698.3303 kcal/mol (23680.9997 without restraints) Performing minimization step: 272. Total energy = 23660.9614 kcal/mol (23643.6529 without restraints) Performing minimization step: 273. Total energy = 23623.7691 kcal/mol (23606.4824 without restraints) Performing minimization step: 274. Total energy = 23586.7522 kcal/mol (23569.4870 without restraints) Performing minimization step: 275. Total energy = 23549.9077 kcal/mol (23532.6638 without restraints) Performing minimization step: 276. Total energy = 23513.2343 kcal/mol (23496.0115 without restraints) Performing minimization step: 277. Total energy = 23476.7296 kcal/mol (23459.5276 without restraints) Performing minimization step: 278. Total energy = 23440.3915 kcal/mol (23423.2102 without restraints) Performing minimization step: 279. Total energy = 23404.2182 kcal/mol (23387.0573 without restraints) Performing minimization step: 280. Total energy = 23368.2079 kcal/mol (23351.0671 without restraints) Performing minimization step: 281. Total energy = 23332.3583 kcal/mol (23315.2375 without restraints) Performing minimization step: 282. Total energy = 23296.6682 kcal/mol (23279.5672 without restraints) Performing minimization step: 283. Total energy = 23261.1354 kcal/mol (23244.0540 without restraints) Performing minimization step: 284. Total energy = 23225.7581 kcal/mol (23208.6960 without restraints) Performing minimization step: 285. Total energy = 23190.5349 kcal/mol (23173.4919 without restraints) Performing minimization step: 286. Total energy = 23155.4639 kcal/mol (23138.4399 without restraints) Performing minimization step: 287. Total energy = 23120.5432 kcal/mol (23103.5380 without restraints) Performing minimization step: 288. Total energy = 23085.7713 kcal/mol (23068.7844 without restraints) Performing minimization step: 289. Total energy = 23051.1467 kcal/mol (23034.1785 without restraints) Performing minimization step: 290. Total energy = 23016.6682 kcal/mol (22999.7182 without restraints) Performing minimization step: 291. Total energy = 22982.3336 kcal/mol (22965.4016 without restraints) Performing minimization step: 292. Total energy = 22948.1418 kcal/mol (22931.2277 without restraints) Performing minimization step: 293. Total energy = 22914.0910 kcal/mol (22897.1945 without restraints) Performing minimization step: 294. Total energy = 22880.1797 kcal/mol (22863.3008 without restraints) Performing minimization step: 295. Total energy = 22846.4066 kcal/mol (22829.5450 without restraints) Performing minimization step: 296. Total energy = 22812.7703 kcal/mol (22795.9259 without restraints) Performing minimization step: 297. Total energy = 22779.2690 kcal/mol (22762.4416 without restraints) Performing minimization step: 298. Total energy = 22745.9023 kcal/mol (22729.0918 without restraints) Performing minimization step: 299. Total energy = 22712.6671 kcal/mol (22695.8733 without restraints) Performing minimization step: 300. Total energy = 22679.5640 kcal/mol (22662.7868 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 301. Total energy = 22646.5912 kcal/mol (22629.8304 without restraints) Performing minimization step: 302. Total energy = 22613.7470 kcal/mol (22597.0026 without restraints) Performing minimization step: 303. Total energy = 22581.0303 kcal/mol (22564.3020 without restraints) Performing minimization step: 304. Total energy = 22548.4396 kcal/mol (22531.7272 without restraints) Performing minimization step: 305. Total energy = 22515.9738 kcal/mol (22499.2771 without restraints) Performing minimization step: 306. Total energy = 22483.6318 kcal/mol (22466.9509 without restraints) Performing minimization step: 307. Total energy = 22451.4124 kcal/mol (22434.7471 without restraints) Performing minimization step: 308. Total energy = 22419.3147 kcal/mol (22402.6649 without restraints) Performing minimization step: 309. Total energy = 22387.3368 kcal/mol (22370.7022 without restraints) Performing minimization step: 310. Total energy = 22355.4784 kcal/mol (22338.8590 without restraints) Performing minimization step: 311. Total energy = 22323.7384 kcal/mol (22307.1341 without restraints) Performing minimization step: 312. Total energy = 22292.1154 kcal/mol (22275.5261 without restraints) Performing minimization step: 313. Total energy = 22260.6082 kcal/mol (22244.0336 without restraints) Performing minimization step: 314. Total energy = 22229.2159 kcal/mol (22212.6560 without restraints) Performing minimization step: 315. Total energy = 22197.9372 kcal/mol (22181.3919 without restraints) Performing minimization step: 316. Total energy = 22166.7716 kcal/mol (22150.2408 without restraints) Performing minimization step: 317. Total energy = 22135.7179 kcal/mol (22119.2014 without restraints) Performing minimization step: 318. Total energy = 22104.7754 kcal/mol (22088.2731 without restraints) Performing minimization step: 319. Total energy = 22073.9425 kcal/mol (22057.4544 without restraints) Performing minimization step: 320. Total energy = 22043.2186 kcal/mol (22026.7445 without restraints) Performing minimization step: 321. Total energy = 22012.6021 kcal/mol (21996.1419 without restraints) Performing minimization step: 322. Total energy = 21982.0936 kcal/mol (21965.6471 without restraints) Performing minimization step: 323. Total energy = 21951.6910 kcal/mol (21935.2585 without restraints) Performing minimization step: 324. Total energy = 21921.3938 kcal/mol (21904.9747 without restraints) Performing minimization step: 325. Total energy = 21891.2010 kcal/mol (21874.7954 without restraints) Performing minimization step: 326. Total energy = 21861.1120 kcal/mol (21844.7198 without restraints) Performing minimization step: 327. Total energy = 21831.1256 kcal/mol (21814.7467 without restraints) Performing minimization step: 328. Total energy = 21801.2411 kcal/mol (21784.8754 without restraints) Performing minimization step: 329. Total energy = 21771.4572 kcal/mol (21755.1046 without restraints) Performing minimization step: 330. Total energy = 21741.7742 kcal/mol (21725.4347 without restraints) Performing minimization step: 331. Total energy = 21712.1905 kcal/mol (21695.8639 without restraints) Performing minimization step: 332. Total energy = 21682.7054 kcal/mol (21666.3916 without restraints) Performing minimization step: 333. Total energy = 21653.3180 kcal/mol (21637.0169 without restraints) Performing minimization step: 334. Total energy = 21624.0280 kcal/mol (21607.7396 without restraints) Performing minimization step: 335. Total energy = 21594.8348 kcal/mol (21578.5591 without restraints) Performing minimization step: 336. Total energy = 21565.7370 kcal/mol (21549.4737 without restraints) Performing minimization step: 337. Total energy = 21536.7340 kcal/mol (21520.4832 without restraints) Performing minimization step: 338. Total energy = 21507.8253 kcal/mol (21491.5868 without restraints) Performing minimization step: 339. Total energy = 21479.0096 kcal/mol (21462.7834 without restraints) Performing minimization step: 340. Total energy = 21450.2873 kcal/mol (21434.0732 without restraints) Performing minimization step: 341. Total energy = 21421.6565 kcal/mol (21405.4546 without restraints) Performing minimization step: 342. Total energy = 21393.1186 kcal/mol (21376.9287 without restraints) Performing minimization step: 343. Total energy = 21364.6707 kcal/mol (21348.4927 without restraints) Performing minimization step: 344. Total energy = 21336.3128 kcal/mol (21320.1467 without restraints) Performing minimization step: 345. Total energy = 21308.0442 kcal/mol (21291.8899 without restraints) Performing minimization step: 346. Total energy = 21279.8645 kcal/mol (21263.7220 without restraints) Performing minimization step: 347. Total energy = 21251.7728 kcal/mol (21235.6419 without restraints) Performing minimization step: 348. Total energy = 21223.7691 kcal/mol (21207.6500 without restraints) Performing minimization step: 349. Total energy = 21195.8526 kcal/mol (21179.7448 without restraints) Performing minimization step: 350. Total energy = 21168.0219 kcal/mol (21151.9254 without restraints) Performing minimization step: 351. Total energy = 21140.2772 kcal/mol (21124.1923 without restraints) Performing minimization step: 352. Total energy = 21112.6176 kcal/mol (21096.5440 without restraints) Performing minimization step: 353. Total energy = 21085.0426 kcal/mol (21068.9802 without restraints) Performing minimization step: 354. Total energy = 21057.5518 kcal/mol (21041.5006 without restraints) Performing minimization step: 355. Total energy = 21030.1434 kcal/mol (21014.1034 without restraints) Performing minimization step: 356. Total energy = 21002.8188 kcal/mol (20986.7899 without restraints) Performing minimization step: 357. Total energy = 20975.5771 kcal/mol (20959.5591 without restraints) Performing minimization step: 358. Total energy = 20948.4165 kcal/mol (20932.4095 without restraints) Performing minimization step: 359. Total energy = 20921.3375 kcal/mol (20905.3413 without restraints) Performing minimization step: 360. Total energy = 20894.3392 kcal/mol (20878.3540 without restraints) Performing minimization step: 361. Total energy = 20867.4215 kcal/mol (20851.4470 without restraints) Performing minimization step: 362. Total energy = 20840.5832 kcal/mol (20824.6194 without restraints) Performing minimization step: 363. Total energy = 20813.8243 kcal/mol (20797.8712 without restraints) Performing minimization step: 364. Total energy = 20787.1438 kcal/mol (20771.2010 without restraints) Performing minimization step: 365. Total energy = 20760.5415 kcal/mol (20744.6095 without restraints) Performing minimization step: 366. Total energy = 20734.0172 kcal/mol (20718.0957 without restraints) Performing minimization step: 367. Total energy = 20707.5699 kcal/mol (20691.6588 without restraints) Performing minimization step: 368. Total energy = 20681.1994 kcal/mol (20665.2986 without restraints) Performing minimization step: 369. Total energy = 20654.9056 kcal/mol (20639.0152 without restraints) Performing minimization step: 370. Total energy = 20628.6876 kcal/mol (20612.8074 without restraints) Performing minimization step: 371. Total energy = 20602.5446 kcal/mol (20586.6745 without restraints) Performing minimization step: 372. Total energy = 20576.4769 kcal/mol (20560.6171 without restraints) Performing minimization step: 373. Total energy = 20550.4838 kcal/mol (20534.6341 without restraints) Performing minimization step: 374. Total energy = 20524.5648 kcal/mol (20508.7252 without restraints) Performing minimization step: 375. Total energy = 20498.7195 kcal/mol (20482.8900 without restraints) Performing minimization step: 376. Total energy = 20472.9474 kcal/mol (20457.1279 without restraints) Performing minimization step: 377. Total energy = 20447.2483 kcal/mol (20431.4387 without restraints) Performing minimization step: 378. Total energy = 20421.6214 kcal/mol (20405.8216 without restraints) Performing minimization step: 379. Total energy = 20396.0665 kcal/mol (20380.2766 without restraints) Performing minimization step: 380. Total energy = 20370.5833 kcal/mol (20354.8032 without restraints) Performing minimization step: 381. Total energy = 20345.1712 kcal/mol (20329.4009 without restraints) Performing minimization step: 382. Total energy = 20319.8298 kcal/mol (20304.0691 without restraints) Performing minimization step: 383. Total energy = 20294.5589 kcal/mol (20278.8079 without restraints) Performing minimization step: 384. Total energy = 20269.3579 kcal/mol (20253.6166 without restraints) Performing minimization step: 385. Total energy = 20244.2268 kcal/mol (20228.4951 without restraints) Performing minimization step: 386. Total energy = 20219.1651 kcal/mol (20203.4428 without restraints) Performing minimization step: 387. Total energy = 20194.1717 kcal/mol (20178.4589 without restraints) Performing minimization step: 388. Total energy = 20169.2472 kcal/mol (20153.5439 without restraints) Performing minimization step: 389. Total energy = 20144.3909 kcal/mol (20128.6970 without restraints) Performing minimization step: 390. Total energy = 20119.6017 kcal/mol (20103.9172 without restraints) Performing minimization step: 391. Total energy = 20094.8805 kcal/mol (20079.2053 without restraints) Performing minimization step: 392. Total energy = 20070.2262 kcal/mol (20054.5603 without restraints) Performing minimization step: 393. Total energy = 20045.6382 kcal/mol (20029.9813 without restraints) Performing minimization step: 394. Total energy = 20021.1170 kcal/mol (20005.4695 without restraints) Performing minimization step: 395. Total energy = 19996.6616 kcal/mol (19981.0234 without restraints) Performing minimization step: 396. Total energy = 19972.2728 kcal/mol (19956.6437 without restraints) Performing minimization step: 397. Total energy = 19947.9481 kcal/mol (19932.3281 without restraints) Performing minimization step: 398. Total energy = 19923.6895 kcal/mol (19908.0786 without restraints) Performing minimization step: 399. Total energy = 19899.4951 kcal/mol (19883.8932 without restraints) Performing minimization step: 400. Total energy = 19875.3652 kcal/mol (19859.7723 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 401. Total energy = 19851.2991 kcal/mol (19835.7152 without restraints) Performing minimization step: 402. Total energy = 19827.2966 kcal/mol (19811.7214 without restraints) Performing minimization step: 403. Total energy = 19803.3579 kcal/mol (19787.7918 without restraints) Performing minimization step: 404. Total energy = 19779.4822 kcal/mol (19763.9250 without restraints) Performing minimization step: 405. Total energy = 19755.6698 kcal/mol (19740.1214 without restraints) Performing minimization step: 406. Total energy = 19731.9200 kcal/mol (19716.3803 without restraints) Performing minimization step: 407. Total energy = 19708.2323 kcal/mol (19692.7015 without restraints) Performing minimization step: 408. Total energy = 19684.6067 kcal/mol (19669.0845 without restraints) Performing minimization step: 409. Total energy = 19661.0427 kcal/mol (19645.5294 without restraints) Performing minimization step: 410. Total energy = 19637.5401 kcal/mol (19622.0353 without restraints) Performing minimization step: 411. Total energy = 19614.0981 kcal/mol (19598.6019 without restraints) Performing minimization step: 412. Total energy = 19590.7174 kcal/mol (19575.2298 without restraints) Performing minimization step: 413. Total energy = 19567.3969 kcal/mol (19551.9178 without restraints) Performing minimization step: 414. Total energy = 19544.1365 kcal/mol (19528.6661 without restraints) Performing minimization step: 415. Total energy = 19520.9363 kcal/mol (19505.4744 without restraints) Performing minimization step: 416. Total energy = 19497.7957 kcal/mol (19482.3422 without restraints) Performing minimization step: 417. Total energy = 19474.7142 kcal/mol (19459.2692 without restraints) Performing minimization step: 418. Total energy = 19451.6924 kcal/mol (19436.2558 without restraints) Performing minimization step: 419. Total energy = 19428.7304 kcal/mol (19413.3022 without restraints) Performing minimization step: 420. Total energy = 19405.8257 kcal/mol (19390.4058 without restraints) Performing minimization step: 421. Total energy = 19382.9796 kcal/mol (19367.5681 without restraints) Performing minimization step: 422. Total energy = 19360.1914 kcal/mol (19344.7882 without restraints) Performing minimization step: 423. Total energy = 19337.4609 kcal/mol (19322.0660 without restraints) Performing minimization step: 424. Total energy = 19314.7882 kcal/mol (19299.4016 without restraints) Performing minimization step: 425. Total energy = 19292.1732 kcal/mol (19276.7948 without restraints) Performing minimization step: 426. Total energy = 19269.6150 kcal/mol (19254.2448 without restraints) Performing minimization step: 427. Total energy = 19247.1138 kcal/mol (19231.7518 without restraints) Performing minimization step: 428. Total energy = 19224.6691 kcal/mol (19209.3152 without restraints) Performing minimization step: 429. Total energy = 19202.2812 kcal/mol (19186.9355 without restraints) Performing minimization step: 430. Total energy = 19179.9486 kcal/mol (19164.6108 without restraints) Performing minimization step: 431. Total energy = 19157.6721 kcal/mol (19142.3424 without restraints) Performing minimization step: 432. Total energy = 19135.4517 kcal/mol (19120.1302 without restraints) Performing minimization step: 433. Total energy = 19113.2867 kcal/mol (19097.9731 without restraints) Performing minimization step: 434. Total energy = 19091.1768 kcal/mol (19075.8712 without restraints) Performing minimization step: 435. Total energy = 19069.1221 kcal/mol (19053.8245 without restraints) Performing minimization step: 436. Total energy = 19047.1218 kcal/mol (19031.8321 without restraints) Performing minimization step: 437. Total energy = 19025.1763 kcal/mol (19009.8945 without restraints) Performing minimization step: 438. Total energy = 19003.2852 kcal/mol (18988.0114 without restraints) Performing minimization step: 439. Total energy = 18981.4485 kcal/mol (18966.1825 without restraints) Performing minimization step: 440. Total energy = 18959.6653 kcal/mol (18944.4071 without restraints) Performing minimization step: 441. Total energy = 18937.9357 kcal/mol (18922.6854 without restraints) Performing minimization step: 442. Total energy = 18916.2595 kcal/mol (18901.0169 without restraints) Performing minimization step: 443. Total energy = 18894.6367 kcal/mol (18879.4019 without restraints) Performing minimization step: 444. Total energy = 18873.0668 kcal/mol (18857.8398 without restraints) Performing minimization step: 445. Total energy = 18851.5497 kcal/mol (18836.3304 without restraints) Performing minimization step: 446. Total energy = 18830.0849 kcal/mol (18814.8734 without restraints) Performing minimization step: 447. Total energy = 18808.6731 kcal/mol (18793.4693 without restraints) Performing minimization step: 448. Total energy = 18787.3135 kcal/mol (18772.1173 without restraints) Performing minimization step: 449. Total energy = 18766.0058 kcal/mol (18750.8173 without restraints) Performing minimization step: 450. Total energy = 18744.7503 kcal/mol (18729.5693 without restraints) Performing minimization step: 451. Total energy = 18723.5462 kcal/mol (18708.3731 without restraints) Performing minimization step: 452. Total energy = 18702.3937 kcal/mol (18687.2279 without restraints) Performing minimization step: 453. Total energy = 18681.2921 kcal/mol (18666.1338 without restraints) Performing minimization step: 454. Total energy = 18660.2414 kcal/mol (18645.0907 without restraints) Performing minimization step: 455. Total energy = 18639.2417 kcal/mol (18624.0985 without restraints) Performing minimization step: 456. Total energy = 18618.2926 kcal/mol (18603.1570 without restraints) Performing minimization step: 457. Total energy = 18597.3940 kcal/mol (18582.2657 without restraints) Performing minimization step: 458. Total energy = 18576.5463 kcal/mol (18561.4259 without restraints) Performing minimization step: 459. Total energy = 18555.7482 kcal/mol (18540.6350 without restraints) Performing minimization step: 460. Total energy = 18534.9999 kcal/mol (18519.8940 without restraints) Performing minimization step: 461. Total energy = 18514.3014 kcal/mol (18499.2029 without restraints) Performing minimization step: 462. Total energy = 18493.6525 kcal/mol (18478.5614 without restraints) Performing minimization step: 463. Total energy = 18473.0537 kcal/mol (18457.9698 without restraints) Performing minimization step: 464. Total energy = 18452.5030 kcal/mol (18437.4266 without restraints) Performing minimization step: 465. Total energy = 18432.0017 kcal/mol (18416.9326 without restraints) Performing minimization step: 466. Total energy = 18411.5491 kcal/mol (18396.4874 without restraints) Performing minimization step: 467. Total energy = 18391.1455 kcal/mol (18376.0909 without restraints) Performing minimization step: 468. Total energy = 18370.7894 kcal/mol (18355.7422 without restraints) Performing minimization step: 469. Total energy = 18350.4826 kcal/mol (18335.4427 without restraints) Performing minimization step: 470. Total energy = 18330.2242 kcal/mol (18315.1915 without restraints) Performing minimization step: 471. Total energy = 18310.0139 kcal/mol (18294.9884 without restraints) Performing minimization step: 472. Total energy = 18289.8510 kcal/mol (18274.8329 without restraints) Performing minimization step: 473. Total energy = 18269.7359 kcal/mol (18254.7248 without restraints) Performing minimization step: 474. Total energy = 18249.6680 kcal/mol (18234.6640 without restraints) Performing minimization step: 475. Total energy = 18229.6476 kcal/mol (18214.6506 without restraints) Performing minimization step: 476. Total energy = 18209.6740 kcal/mol (18194.6843 without restraints) Performing minimization step: 477. Total energy = 18189.7477 kcal/mol (18174.7651 without restraints) Performing minimization step: 478. Total energy = 18169.8680 kcal/mol (18154.8926 without restraints) Performing minimization step: 479. Total energy = 18150.0350 kcal/mol (18135.0665 without restraints) Performing minimization step: 480. Total energy = 18130.2484 kcal/mol (18115.2870 without restraints) Performing minimization step: 481. Total energy = 18110.5085 kcal/mol (18095.5541 without restraints) Performing minimization step: 482. Total energy = 18090.8150 kcal/mol (18075.8678 without restraints) Performing minimization step: 483. Total energy = 18071.1675 kcal/mol (18056.2272 without restraints) Performing minimization step: 484. Total energy = 18051.5653 kcal/mol (18036.6318 without restraints) Performing minimization step: 485. Total energy = 18032.0094 kcal/mol (18017.0830 without restraints) Performing minimization step: 486. Total energy = 18012.4988 kcal/mol (17997.5793 without restraints) Performing minimization step: 487. Total energy = 17993.0334 kcal/mol (17978.1209 without restraints) Performing minimization step: 488. Total energy = 17973.6136 kcal/mol (17958.7080 without restraints) Performing minimization step: 489. Total energy = 17954.2387 kcal/mol (17939.3400 without restraints) Performing minimization step: 490. Total energy = 17934.9088 kcal/mol (17920.0169 without restraints) Performing minimization step: 491. Total energy = 17915.6238 kcal/mol (17900.7387 without restraints) Performing minimization step: 492. Total energy = 17896.3833 kcal/mol (17881.5052 without restraints) Performing minimization step: 493. Total energy = 17877.1876 kcal/mol (17862.3165 without restraints) Performing minimization step: 494. Total energy = 17858.0361 kcal/mol (17843.1717 without restraints) Performing minimization step: 495. Total energy = 17838.9296 kcal/mol (17824.0720 without restraints) Performing minimization step: 496. Total energy = 17819.8668 kcal/mol (17805.0161 without restraints) Performing minimization step: 497. Total energy = 17800.8472 kcal/mol (17786.0030 without restraints) Performing minimization step: 498. Total energy = 17781.8718 kcal/mol (17767.0345 without restraints) Performing minimization step: 499. Total energy = 17762.9401 kcal/mol (17748.1096 without restraints) Performing minimization step: 500. Total energy = 17744.0522 kcal/mol (17729.2285 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 501. Total energy = 17725.2073 kcal/mol (17710.3903 without restraints) Performing minimization step: 502. Total energy = 17706.4064 kcal/mol (17691.5960 without restraints) Performing minimization step: 503. Total energy = 17687.6482 kcal/mol (17672.8446 without restraints) Performing minimization step: 504. Total energy = 17668.9332 kcal/mol (17654.1362 without restraints) Performing minimization step: 505. Total energy = 17650.2608 kcal/mol (17635.4705 without restraints) Performing minimization step: 506. Total energy = 17631.6311 kcal/mol (17616.8475 without restraints) Performing minimization step: 507. Total energy = 17613.0439 kcal/mol (17598.2669 without restraints) Performing minimization step: 508. Total energy = 17594.4995 kcal/mol (17579.7293 without restraints) Performing minimization step: 509. Total energy = 17575.9971 kcal/mol (17561.2332 without restraints) Performing minimization step: 510. Total energy = 17557.5367 kcal/mol (17542.7797 without restraints) Performing minimization step: 511. Total energy = 17539.1186 kcal/mol (17524.3681 without restraints) Performing minimization step: 512. Total energy = 17520.7426 kcal/mol (17505.9985 without restraints) Performing minimization step: 513. Total energy = 17502.4081 kcal/mol (17487.6707 without restraints) Performing minimization step: 514. Total energy = 17484.1151 kcal/mol (17469.3842 without restraints) Performing minimization step: 515. Total energy = 17465.8641 kcal/mol (17451.1397 without restraints) Performing minimization step: 516. Total energy = 17447.6541 kcal/mol (17432.9362 without restraints) Performing minimization step: 517. Total energy = 17429.4852 kcal/mol (17414.7738 without restraints) Performing minimization step: 518. Total energy = 17411.3578 kcal/mol (17396.6529 without restraints) Performing minimization step: 519. Total energy = 17393.2712 kcal/mol (17378.5727 without restraints) Performing minimization step: 520. Total energy = 17375.2258 kcal/mol (17360.5339 without restraints) Performing minimization step: 521. Total energy = 17357.2210 kcal/mol (17342.5355 without restraints) Performing minimization step: 522. Total energy = 17339.2567 kcal/mol (17324.5777 without restraints) Performing minimization step: 523. Total energy = 17321.3334 kcal/mol (17306.6608 without restraints) Performing minimization step: 524. Total energy = 17303.4504 kcal/mol (17288.7842 without restraints) Performing minimization step: 525. Total energy = 17285.6071 kcal/mol (17270.9473 without restraints) Performing minimization step: 526. Total energy = 17267.8044 kcal/mol (17253.1509 without restraints) Performing minimization step: 527. Total energy = 17250.0414 kcal/mol (17235.3942 without restraints) Performing minimization step: 528. Total energy = 17232.3183 kcal/mol (17217.6775 without restraints) Performing minimization step: 529. Total energy = 17214.6351 kcal/mol (17200.0007 without restraints) Performing minimization step: 530. Total energy = 17196.9918 kcal/mol (17182.3638 without restraints) Performing minimization step: 531. Total energy = 17179.3884 kcal/mol (17164.7667 without restraints) Performing minimization step: 532. Total energy = 17161.8238 kcal/mol (17147.2083 without restraints) Performing minimization step: 533. Total energy = 17144.2984 kcal/mol (17129.6893 without restraints) Performing minimization step: 534. Total energy = 17126.8120 kcal/mol (17112.2092 without restraints) Performing minimization step: 535. Total energy = 17109.3647 kcal/mol (17094.7681 without restraints) Performing minimization step: 536. Total energy = 17091.9562 kcal/mol (17077.3659 without restraints) Performing minimization step: 537. Total energy = 17074.5869 kcal/mol (17060.0028 without restraints) Performing minimization step: 538. Total energy = 17057.2567 kcal/mol (17042.6788 without restraints) Performing minimization step: 539. Total energy = 17039.9650 kcal/mol (17025.3933 without restraints) Performing minimization step: 540. Total energy = 17022.7118 kcal/mol (17008.1465 without restraints) Performing minimization step: 541. Total energy = 17005.4968 kcal/mol (16990.9375 without restraints) Performing minimization step: 542. Total energy = 16988.3197 kcal/mol (16973.7667 without restraints) Performing minimization step: 543. Total energy = 16971.1805 kcal/mol (16956.6337 without restraints) Performing minimization step: 544. Total energy = 16954.0798 kcal/mol (16939.5391 without restraints) Performing minimization step: 545. Total energy = 16937.0171 kcal/mol (16922.4827 without restraints) Performing minimization step: 546. Total energy = 16919.9925 kcal/mol (16905.4641 without restraints) Performing minimization step: 547. Total energy = 16903.0053 kcal/mol (16888.4832 without restraints) Performing minimization step: 548. Total energy = 16886.0556 kcal/mol (16871.5396 without restraints) Performing minimization step: 549. Total energy = 16869.1435 kcal/mol (16854.6334 without restraints) Performing minimization step: 550. Total energy = 16852.2691 kcal/mol (16837.7651 without restraints) Performing minimization step: 551. Total energy = 16835.4313 kcal/mol (16820.9334 without restraints) Performing minimization step: 552. Total energy = 16818.6305 kcal/mol (16804.1387 without restraints) Performing minimization step: 553. Total energy = 16801.8671 kcal/mol (16787.3814 without restraints) Performing minimization step: 554. Total energy = 16785.1408 kcal/mol (16770.6611 without restraints) Performing minimization step: 555. Total energy = 16768.4510 kcal/mol (16753.9773 without restraints) Performing minimization step: 556. Total energy = 16751.7984 kcal/mol (16737.3309 without restraints) Performing minimization step: 557. Total energy = 16735.1822 kcal/mol (16720.7206 without restraints) Performing minimization step: 558. Total energy = 16718.6025 kcal/mol (16704.1471 without restraints) Performing minimization step: 559. Total energy = 16702.0595 kcal/mol (16687.6099 without restraints) Performing minimization step: 560. Total energy = 16685.5521 kcal/mol (16671.1085 without restraints) Performing minimization step: 561. Total energy = 16669.0811 kcal/mol (16654.6434 without restraints) Performing minimization step: 562. Total energy = 16652.6464 kcal/mol (16638.2147 without restraints) Performing minimization step: 563. Total energy = 16636.2468 kcal/mol (16621.8211 without restraints) Performing minimization step: 564. Total energy = 16619.8836 kcal/mol (16605.4639 without restraints) Performing minimization step: 565. Total energy = 16603.5567 kcal/mol (16589.1429 without restraints) Performing minimization step: 566. Total energy = 16587.2652 kcal/mol (16572.8573 without restraints) Performing minimization step: 567. Total energy = 16571.0093 kcal/mol (16556.6074 without restraints) Performing minimization step: 568. Total energy = 16554.7889 kcal/mol (16540.3928 without restraints) Performing minimization step: 569. Total energy = 16538.6029 kcal/mol (16524.2127 without restraints) Performing minimization step: 570. Total energy = 16522.4536 kcal/mol (16508.0694 without restraints) Performing minimization step: 571. Total energy = 16506.3390 kcal/mol (16491.9605 without restraints) Performing minimization step: 572. Total energy = 16490.2593 kcal/mol (16475.8867 without restraints) Performing minimization step: 573. Total energy = 16474.2148 kcal/mol (16459.8480 without restraints) Performing minimization step: 574. Total energy = 16458.2048 kcal/mol (16443.8440 without restraints) Performing minimization step: 575. Total energy = 16442.2297 kcal/mol (16427.8745 without restraints) Performing minimization step: 576. Total energy = 16426.2890 kcal/mol (16411.9397 without restraints) Performing minimization step: 577. Total energy = 16410.3831 kcal/mol (16396.0395 without restraints) Performing minimization step: 578. Total energy = 16394.5118 kcal/mol (16380.1742 without restraints) Performing minimization step: 579. Total energy = 16378.6748 kcal/mol (16364.3429 without restraints) Performing minimization step: 580. Total energy = 16362.8718 kcal/mol (16348.5457 without restraints) Performing minimization step: 581. Total energy = 16347.1033 kcal/mol (16332.7830 without restraints) Performing minimization step: 582. Total energy = 16331.3687 kcal/mol (16317.0540 without restraints) Performing minimization step: 583. Total energy = 16315.6681 kcal/mol (16301.3592 without restraints) Performing minimization step: 584. Total energy = 16300.0012 kcal/mol (16285.6981 without restraints) Performing minimization step: 585. Total energy = 16284.3684 kcal/mol (16270.0710 without restraints) Performing minimization step: 586. Total energy = 16268.7693 kcal/mol (16254.4777 without restraints) Performing minimization step: 587. Total energy = 16253.2039 kcal/mol (16238.9179 without restraints) Performing minimization step: 588. Total energy = 16237.6718 kcal/mol (16223.3915 without restraints) Performing minimization step: 589. Total energy = 16222.1729 kcal/mol (16207.8983 without restraints) Performing minimization step: 590. Total energy = 16206.7075 kcal/mol (16192.4387 without restraints) Performing minimization step: 591. Total energy = 16191.2758 kcal/mol (16177.0125 without restraints) Performing minimization step: 592. Total energy = 16175.8766 kcal/mol (16161.6189 without restraints) Performing minimization step: 593. Total energy = 16160.5103 kcal/mol (16146.2584 without restraints) Performing minimization step: 594. Total energy = 16145.1773 kcal/mol (16130.9310 without restraints) Performing minimization step: 595. Total energy = 16129.8770 kcal/mol (16115.6363 without restraints) Performing minimization step: 596. Total energy = 16114.6093 kcal/mol (16100.3743 without restraints) Performing minimization step: 597. Total energy = 16099.3737 kcal/mol (16085.1443 without restraints) Performing minimization step: 598. Total energy = 16084.1715 kcal/mol (16069.9476 without restraints) Performing minimization step: 599. Total energy = 16069.0017 kcal/mol (16054.7836 without restraints) Performing minimization step: 600. Total energy = 16053.8641 kcal/mol (16039.6516 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 601. Total energy = 16038.7594 kcal/mol (16024.5523 without restraints) Performing minimization step: 602. Total energy = 16023.6859 kcal/mol (16009.4840 without restraints) Performing minimization step: 603. Total energy = 16008.6446 kcal/mol (15994.4487 without restraints) Performing minimization step: 604. Total energy = 15993.6356 kcal/mol (15979.4453 without restraints) Performing minimization step: 605. Total energy = 15978.6586 kcal/mol (15964.4737 without restraints) Performing minimization step: 606. Total energy = 15963.7132 kcal/mol (15949.5338 without restraints) Performing minimization step: 607. Total energy = 15948.7997 kcal/mol (15934.6258 without restraints) Performing minimization step: 608. Total energy = 15933.9176 kcal/mol (15919.7493 without restraints) Performing minimization step: 609. Total energy = 15919.0664 kcal/mol (15904.9036 without restraints) Performing minimization step: 610. Total energy = 15904.2474 kcal/mol (15890.0900 without restraints) Performing minimization step: 611. Total energy = 15889.4598 kcal/mol (15875.3080 without restraints) Performing minimization step: 612. Total energy = 15874.7035 kcal/mol (15860.5571 without restraints) Performing minimization step: 613. Total energy = 15859.9784 kcal/mol (15845.8374 without restraints) Performing minimization step: 614. Total energy = 15845.2839 kcal/mol (15831.1483 without restraints) Performing minimization step: 615. Total energy = 15830.6209 kcal/mol (15816.4909 without restraints) Performing minimization step: 616. Total energy = 15815.9889 kcal/mol (15801.8643 without restraints) Performing minimization step: 617. Total energy = 15801.3873 kcal/mol (15787.2682 without restraints) Performing minimization step: 618. Total energy = 15786.8174 kcal/mol (15772.7039 without restraints) Performing minimization step: 619. Total energy = 15772.2780 kcal/mol (15758.1697 without restraints) Performing minimization step: 620. Total energy = 15757.7687 kcal/mol (15743.6657 without restraints) Performing minimization step: 621. Total energy = 15743.2891 kcal/mol (15729.1916 without restraints) Performing minimization step: 622. Total energy = 15728.8409 kcal/mol (15714.7487 without restraints) Performing minimization step: 623. Total energy = 15714.4226 kcal/mol (15700.3359 without restraints) Performing minimization step: 624. Total energy = 15700.0347 kcal/mol (15685.9533 without restraints) Performing minimization step: 625. Total energy = 15685.6770 kcal/mol (15671.6009 without restraints) Performing minimization step: 626. Total energy = 15671.3482 kcal/mol (15657.2775 without restraints) Performing minimization step: 627. Total energy = 15657.0506 kcal/mol (15642.9853 without restraints) Performing minimization step: 628. Total energy = 15642.7827 kcal/mol (15628.7227 without restraints) Performing minimization step: 629. Total energy = 15628.5449 kcal/mol (15614.4903 without restraints) Performing minimization step: 630. Total energy = 15614.3366 kcal/mol (15600.2872 without restraints) Performing minimization step: 631. Total energy = 15600.1579 kcal/mol (15586.1138 without restraints) Performing minimization step: 632. Total energy = 15586.0083 kcal/mol (15571.9695 without restraints) Performing minimization step: 633. Total energy = 15571.8886 kcal/mol (15557.8551 without restraints) Performing minimization step: 634. Total energy = 15557.7984 kcal/mol (15543.7701 without restraints) Performing minimization step: 635. Total energy = 15543.7375 kcal/mol (15529.7145 without restraints) Performing minimization step: 636. Total energy = 15529.7055 kcal/mol (15515.6879 without restraints) Performing minimization step: 637. Total energy = 15515.7032 kcal/mol (15501.6908 without restraints) Performing minimization step: 638. Total energy = 15501.7298 kcal/mol (15487.7226 without restraints) Performing minimization step: 639. Total energy = 15487.7851 kcal/mol (15473.7831 without restraints) Performing minimization step: 640. Total energy = 15473.8695 kcal/mol (15459.8727 without restraints) Performing minimization step: 641. Total energy = 15459.9827 kcal/mol (15445.9911 without restraints) Performing minimization step: 642. Total energy = 15446.1241 kcal/mol (15432.1378 without restraints) Performing minimization step: 643. Total energy = 15432.2944 kcal/mol (15418.3134 without restraints) Performing minimization step: 644. Total energy = 15418.4931 kcal/mol (15404.5172 without restraints) Performing minimization step: 645. Total energy = 15404.7204 kcal/mol (15390.7497 without restraints) Performing minimization step: 646. Total energy = 15390.9764 kcal/mol (15377.0108 without restraints) Performing minimization step: 647. Total energy = 15377.2604 kcal/mol (15363.3000 without restraints) Performing minimization step: 648. Total energy = 15363.5730 kcal/mol (15349.6179 without restraints) Performing minimization step: 649. Total energy = 15349.9137 kcal/mol (15335.9637 without restraints) Performing minimization step: 650. Total energy = 15336.2825 kcal/mol (15322.3376 without restraints) Performing minimization step: 651. Total energy = 15322.6790 kcal/mol (15308.7392 without restraints) Performing minimization step: 652. Total energy = 15309.1031 kcal/mol (15295.1684 without restraints) Performing minimization step: 653. Total energy = 15295.5553 kcal/mol (15281.6257 without restraints) Performing minimization step: 654. Total energy = 15282.0353 kcal/mol (15268.1109 without restraints) Performing minimization step: 655. Total energy = 15268.5429 kcal/mol (15254.6235 without restraints) Performing minimization step: 656. Total energy = 15255.0780 kcal/mol (15241.1638 without restraints) Performing minimization step: 657. Total energy = 15241.6407 kcal/mol (15227.7316 without restraints) Performing minimization step: 658. Total energy = 15228.2305 kcal/mol (15214.3264 without restraints) Performing minimization step: 659. Total energy = 15214.8479 kcal/mol (15200.9489 without restraints) Performing minimization step: 660. Total energy = 15201.4932 kcal/mol (15187.5993 without restraints) Performing minimization step: 661. Total energy = 15188.1654 kcal/mol (15174.2766 without restraints) Performing minimization step: 662. Total energy = 15174.8645 kcal/mol (15160.9807 without restraints) Performing minimization step: 663. Total energy = 15161.5905 kcal/mol (15147.7116 without restraints) Performing minimization step: 664. Total energy = 15148.3434 kcal/mol (15134.4699 without restraints) Performing minimization step: 665. Total energy = 15135.1236 kcal/mol (15121.2549 without restraints) Performing minimization step: 666. Total energy = 15121.9304 kcal/mol (15108.0667 without restraints) Performing minimization step: 667. Total energy = 15108.7639 kcal/mol (15094.9053 without restraints) Performing minimization step: 668. Total energy = 15095.6245 kcal/mol (15081.7709 without restraints) Performing minimization step: 669. Total energy = 15082.5112 kcal/mol (15068.6625 without restraints) Performing minimization step: 670. Total energy = 15069.4245 kcal/mol (15055.5809 without restraints) Performing minimization step: 671. Total energy = 15056.3643 kcal/mol (15042.5258 without restraints) Performing minimization step: 672. Total energy = 15043.3307 kcal/mol (15029.4971 without restraints) Performing minimization step: 673. Total energy = 15030.3236 kcal/mol (15016.4950 without restraints) Performing minimization step: 674. Total energy = 15017.3423 kcal/mol (15003.5186 without restraints) Performing minimization step: 675. Total energy = 15004.3867 kcal/mol (14990.5679 without restraints) Performing minimization step: 676. Total energy = 14991.4574 kcal/mol (14977.6435 without restraints) Performing minimization step: 677. Total energy = 14978.5541 kcal/mol (14964.7451 without restraints) Performing minimization step: 678. Total energy = 14965.6766 kcal/mol (14951.8726 without restraints) Performing minimization step: 679. Total energy = 14952.8251 kcal/mol (14939.0260 without restraints) Performing minimization step: 680. Total energy = 14939.9993 kcal/mol (14926.2051 without restraints) Performing minimization step: 681. Total energy = 14927.1992 kcal/mol (14913.4100 without restraints) Performing minimization step: 682. Total energy = 14914.4254 kcal/mol (14900.6411 without restraints) Performing minimization step: 683. Total energy = 14901.6764 kcal/mol (14887.8969 without restraints) Performing minimization step: 684. Total energy = 14888.9527 kcal/mol (14875.1781 without restraints) Performing minimization step: 685. Total energy = 14876.2550 kcal/mol (14862.4853 without restraints) Performing minimization step: 686. Total energy = 14863.5820 kcal/mol (14849.8172 without restraints) Performing minimization step: 687. Total energy = 14850.9344 kcal/mol (14837.1744 without restraints) Performing minimization step: 688. Total energy = 14838.3122 kcal/mol (14824.5570 without restraints) Performing minimization step: 689. Total energy = 14825.7145 kcal/mol (14811.9643 without restraints) Performing minimization step: 690. Total energy = 14813.1421 kcal/mol (14799.3967 without restraints) Performing minimization step: 691. Total energy = 14800.5947 kcal/mol (14786.8540 without restraints) Performing minimization step: 692. Total energy = 14788.0721 kcal/mol (14774.3362 without restraints) Performing minimization step: 693. Total energy = 14775.5743 kcal/mol (14761.8434 without restraints) Performing minimization step: 694. Total energy = 14763.1017 kcal/mol (14749.3756 without restraints) Performing minimization step: 695. Total energy = 14750.6534 kcal/mol (14736.9320 without restraints) Performing minimization step: 696. Total energy = 14738.2292 kcal/mol (14724.5127 without restraints) Performing minimization step: 697. Total energy = 14725.8301 kcal/mol (14712.1184 without restraints) Performing minimization step: 698. Total energy = 14713.4555 kcal/mol (14699.7486 without restraints) Performing minimization step: 699. Total energy = 14701.1056 kcal/mol (14687.4034 without restraints) Performing minimization step: 700. Total energy = 14688.7796 kcal/mol (14675.0822 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 701. Total energy = 14676.4785 kcal/mol (14662.7857 without restraints) Performing minimization step: 702. Total energy = 14664.2004 kcal/mol (14650.5125 without restraints) Performing minimization step: 703. Total energy = 14651.9468 kcal/mol (14638.2636 without restraints) Performing minimization step: 704. Total energy = 14639.7169 kcal/mol (14626.0384 without restraints) Performing minimization step: 705. Total energy = 14627.5114 kcal/mol (14613.8377 without restraints) Performing minimization step: 706. Total energy = 14615.3297 kcal/mol (14601.6607 without restraints) Performing minimization step: 707. Total energy = 14603.1719 kcal/mol (14589.5076 without restraints) Performing minimization step: 708. Total energy = 14591.0374 kcal/mol (14577.3779 without restraints) Performing minimization step: 709. Total energy = 14578.9269 kcal/mol (14565.2719 without restraints) Performing minimization step: 710. Total energy = 14566.8400 kcal/mol (14553.1899 without restraints) Performing minimization step: 711. Total energy = 14554.7764 kcal/mol (14541.1309 without restraints) Performing minimization step: 712. Total energy = 14542.7362 kcal/mol (14529.0954 without restraints) Performing minimization step: 713. Total energy = 14530.7194 kcal/mol (14517.0834 without restraints) Performing minimization step: 714. Total energy = 14518.7263 kcal/mol (14505.0948 without restraints) Performing minimization step: 715. Total energy = 14506.7562 kcal/mol (14493.1294 without restraints) Performing minimization step: 716. Total energy = 14494.8093 kcal/mol (14481.1871 without restraints) Performing minimization step: 717. Total energy = 14482.8851 kcal/mol (14469.2675 without restraints) Performing minimization step: 718. Total energy = 14470.9844 kcal/mol (14457.3716 without restraints) Performing minimization step: 719. Total energy = 14459.1071 kcal/mol (14445.4989 without restraints) Performing minimization step: 720. Total energy = 14447.2524 kcal/mol (14433.6488 without restraints) Performing minimization step: 721. Total energy = 14435.4206 kcal/mol (14421.8216 without restraints) Performing minimization step: 722. Total energy = 14423.6117 kcal/mol (14410.0174 without restraints) Performing minimization step: 723. Total energy = 14411.8255 kcal/mol (14398.2357 without restraints) Performing minimization step: 724. Total energy = 14400.0617 kcal/mol (14386.4766 without restraints) Performing minimization step: 725. Total energy = 14388.3205 kcal/mol (14374.7399 without restraints) Performing minimization step: 726. Total energy = 14376.6020 kcal/mol (14363.0261 without restraints) Performing minimization step: 727. Total energy = 14364.9057 kcal/mol (14351.3344 without restraints) Performing minimization step: 728. Total energy = 14353.2321 kcal/mol (14339.6652 without restraints) Performing minimization step: 729. Total energy = 14341.5807 kcal/mol (14328.0185 without restraints) Performing minimization step: 730. Total energy = 14329.9522 kcal/mol (14316.3947 without restraints) Performing minimization step: 731. Total energy = 14318.3457 kcal/mol (14304.7927 without restraints) Performing minimization step: 732. Total energy = 14306.7609 kcal/mol (14293.2125 without restraints) Performing minimization step: 733. Total energy = 14295.1989 kcal/mol (14281.6549 without restraints) Performing minimization step: 734. Total energy = 14283.6584 kcal/mol (14270.1189 without restraints) Performing minimization step: 735. Total energy = 14272.1398 kcal/mol (14258.6049 without restraints) Performing minimization step: 736. Total energy = 14260.6431 kcal/mol (14247.1127 without restraints) Performing minimization step: 737. Total energy = 14249.1681 kcal/mol (14235.6422 without restraints) Performing minimization step: 738. Total energy = 14237.7146 kcal/mol (14224.1932 without restraints) Performing minimization step: 739. Total energy = 14226.2838 kcal/mol (14212.7670 without restraints) Performing minimization step: 740. Total energy = 14214.8739 kcal/mol (14201.3616 without restraints) Performing minimization step: 741. Total energy = 14203.4857 kcal/mol (14189.9778 without restraints) Performing minimization step: 742. Total energy = 14192.1189 kcal/mol (14178.6155 without restraints) Performing minimization step: 743. Total energy = 14180.7734 kcal/mol (14167.2744 without restraints) Performing minimization step: 744. Total energy = 14169.4492 kcal/mol (14155.9547 without restraints) Performing minimization step: 745. Total energy = 14158.1466 kcal/mol (14144.6567 without restraints) Performing minimization step: 746. Total energy = 14146.8649 kcal/mol (14133.3793 without restraints) Performing minimization step: 747. Total energy = 14135.6049 kcal/mol (14122.1238 without restraints) Performing minimization step: 748. Total energy = 14124.3659 kcal/mol (14110.8893 without restraints) Performing minimization step: 749. Total energy = 14113.1481 kcal/mol (14099.6761 without restraints) Performing minimization step: 750. Total energy = 14101.9509 kcal/mol (14088.4831 without restraints) Performing minimization step: 751. Total energy = 14090.7751 kcal/mol (14077.3118 without restraints) Performing minimization step: 752. Total energy = 14079.6197 kcal/mol (14066.1607 without restraints) Performing minimization step: 753. Total energy = 14068.4853 kcal/mol (14055.0308 without restraints) Performing minimization step: 754. Total energy = 14057.3712 kcal/mol (14043.9212 without restraints) Performing minimization step: 755. Total energy = 14046.2782 kcal/mol (14032.8325 without restraints) Performing minimization step: 756. Total energy = 14035.2057 kcal/mol (14021.7644 without restraints) Performing minimization step: 757. Total energy = 14024.1536 kcal/mol (14010.7166 without restraints) Performing minimization step: 758. Total energy = 14013.1223 kcal/mol (13999.6897 without restraints) Performing minimization step: 759. Total energy = 14002.1116 kcal/mol (13988.6834 without restraints) Performing minimization step: 760. Total energy = 13991.1214 kcal/mol (13977.6976 without restraints) Performing minimization step: 761. Total energy = 13980.1515 kcal/mol (13966.7320 without restraints) Performing minimization step: 762. Total energy = 13969.2016 kcal/mol (13955.7866 without restraints) Performing minimization step: 763. Total energy = 13958.2717 kcal/mol (13944.8610 without restraints) Performing minimization step: 764. Total energy = 13947.3620 kcal/mol (13933.9557 without restraints) Performing minimization step: 765. Total energy = 13936.4726 kcal/mol (13923.0706 without restraints) Performing minimization step: 766. Total energy = 13925.6031 kcal/mol (13912.2053 without restraints) Performing minimization step: 767. Total energy = 13914.7532 kcal/mol (13901.3598 without restraints) Performing minimization step: 768. Total energy = 13903.9235 kcal/mol (13890.5345 without restraints) Performing minimization step: 769. Total energy = 13893.1139 kcal/mol (13879.7294 without restraints) Performing minimization step: 770. Total energy = 13882.3246 kcal/mol (13868.9442 without restraints) Performing minimization step: 771. Total energy = 13871.5545 kcal/mol (13858.1784 without restraints) Performing minimization step: 772. Total energy = 13860.8041 kcal/mol (13847.4324 without restraints) Performing minimization step: 773. Total energy = 13850.0735 kcal/mol (13836.7059 without restraints) Performing minimization step: 774. Total energy = 13839.3626 kcal/mol (13825.9994 without restraints) Performing minimization step: 775. Total energy = 13828.6709 kcal/mol (13815.3120 without restraints) Performing minimization step: 776. Total energy = 13817.9987 kcal/mol (13804.6440 without restraints) Performing minimization step: 777. Total energy = 13807.3461 kcal/mol (13793.9959 without restraints) Performing minimization step: 778. Total energy = 13796.7128 kcal/mol (13783.3666 without restraints) Performing minimization step: 779. Total energy = 13786.0987 kcal/mol (13772.7569 without restraints) Performing minimization step: 780. Total energy = 13775.5038 kcal/mol (13762.1662 without restraints) Performing minimization step: 781. Total energy = 13764.9282 kcal/mol (13751.5949 without restraints) Performing minimization step: 782. Total energy = 13754.3719 kcal/mol (13741.0428 without restraints) Performing minimization step: 783. Total energy = 13743.8340 kcal/mol (13730.5092 without restraints) Performing minimization step: 784. Total energy = 13733.3161 kcal/mol (13719.9956 without restraints) Performing minimization step: 785. Total energy = 13722.8168 kcal/mol (13709.5004 without restraints) Performing minimization step: 786. Total energy = 13712.3366 kcal/mol (13699.0244 without restraints) Performing minimization step: 787. Total energy = 13701.8751 kcal/mol (13688.5672 without restraints) Performing minimization step: 788. Total energy = 13691.4323 kcal/mol (13678.1285 without restraints) Performing minimization step: 789. Total energy = 13681.0080 kcal/mol (13667.7082 without restraints) Performing minimization step: 790. Total energy = 13670.6023 kcal/mol (13657.3070 without restraints) Performing minimization step: 791. Total energy = 13660.2153 kcal/mol (13646.9241 without restraints) Performing minimization step: 792. Total energy = 13649.8472 kcal/mol (13636.5603 without restraints) Performing minimization step: 793. Total energy = 13639.4976 kcal/mol (13626.2149 without restraints) Performing minimization step: 794. Total energy = 13629.1664 kcal/mol (13615.8878 without restraints) Performing minimization step: 795. Total energy = 13618.8537 kcal/mol (13605.5793 without restraints) Performing minimization step: 796. Total energy = 13608.5589 kcal/mol (13595.2885 without restraints) Performing minimization step: 797. Total energy = 13598.2826 kcal/mol (13585.0165 without restraints) Performing minimization step: 798. Total energy = 13588.0247 kcal/mol (13574.7628 without restraints) Performing minimization step: 799. Total energy = 13577.7846 kcal/mol (13564.5267 without restraints) Performing minimization step: 800. Total energy = 13567.5631 kcal/mol (13554.3095 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 801. Total energy = 13557.3604 kcal/mol (13544.1109 without restraints) Performing minimization step: 802. Total energy = 13547.1749 kcal/mol (13533.9295 without restraints) Performing minimization step: 803. Total energy = 13537.0074 kcal/mol (13523.7662 without restraints) Performing minimization step: 804. Total energy = 13526.8579 kcal/mol (13513.6206 without restraints) Performing minimization step: 805. Total energy = 13516.7260 kcal/mol (13503.4930 without restraints) Performing minimization step: 806. Total energy = 13506.6121 kcal/mol (13493.3833 without restraints) Performing minimization step: 807. Total energy = 13496.5163 kcal/mol (13483.2915 without restraints) Performing minimization step: 808. Total energy = 13486.4383 kcal/mol (13473.2176 without restraints) Performing minimization step: 809. Total energy = 13476.3772 kcal/mol (13463.1606 without restraints) Performing minimization step: 810. Total energy = 13466.3342 kcal/mol (13453.1217 without restraints) Performing minimization step: 811. Total energy = 13456.3086 kcal/mol (13443.1002 without restraints) Performing minimization step: 812. Total energy = 13446.3005 kcal/mol (13433.0960 without restraints) Performing minimization step: 813. Total energy = 13436.3095 kcal/mol (13423.1092 without restraints) Performing minimization step: 814. Total energy = 13426.3364 kcal/mol (13413.1402 without restraints) Performing minimization step: 815. Total energy = 13416.3808 kcal/mol (13403.1887 without restraints) Performing minimization step: 816. Total energy = 13406.4425 kcal/mol (13393.2544 without restraints) Performing minimization step: 817. Total energy = 13396.5214 kcal/mol (13383.3374 without restraints) Performing minimization step: 818. Total energy = 13386.6179 kcal/mol (13373.4379 without restraints) Performing minimization step: 819. Total energy = 13376.7313 kcal/mol (13363.5554 without restraints) Performing minimization step: 820. Total energy = 13366.8618 kcal/mol (13353.6900 without restraints) Performing minimization step: 821. Total energy = 13357.0094 kcal/mol (13343.8416 without restraints) Performing minimization step: 822. Total energy = 13347.1743 kcal/mol (13334.0105 without restraints) Performing minimization step: 823. Total energy = 13337.3561 kcal/mol (13324.1965 without restraints) Performing minimization step: 824. Total energy = 13327.5548 kcal/mol (13314.3991 without restraints) Performing minimization step: 825. Total energy = 13317.7703 kcal/mol (13304.6185 without restraints) Performing minimization step: 826. Total energy = 13308.0013 kcal/mol (13294.8535 without restraints) Performing minimization step: 827. Total energy = 13298.2495 kcal/mol (13285.1056 without restraints) Performing minimization step: 828. Total energy = 13288.5151 kcal/mol (13275.3753 without restraints) Performing minimization step: 829. Total energy = 13278.7976 kcal/mol (13265.6619 without restraints) Performing minimization step: 830. Total energy = 13269.0964 kcal/mol (13255.9648 without restraints) Performing minimization step: 831. Total energy = 13259.4121 kcal/mol (13246.2844 without restraints) Performing minimization step: 832. Total energy = 13249.7444 kcal/mol (13236.6206 without restraints) Performing minimization step: 833. Total energy = 13240.0936 kcal/mol (13226.9738 without restraints) Performing minimization step: 834. Total energy = 13230.4588 kcal/mol (13217.3430 without restraints) Performing minimization step: 835. Total energy = 13220.8406 kcal/mol (13207.7288 without restraints) Performing minimization step: 836. Total energy = 13211.2386 kcal/mol (13198.1307 without restraints) Performing minimization step: 837. Total energy = 13201.6531 kcal/mol (13188.5491 without restraints) Performing minimization step: 838. Total energy = 13192.0836 kcal/mol (13178.9836 without restraints) Performing minimization step: 839. Total energy = 13182.5304 kcal/mol (13169.4344 without restraints) Performing minimization step: 840. Total energy = 13172.9938 kcal/mol (13159.9019 without restraints) Performing minimization step: 841. Total energy = 13163.4734 kcal/mol (13150.3854 without restraints) Performing minimization step: 842. Total energy = 13153.9681 kcal/mol (13140.8839 without restraints) Performing minimization step: 843. Total energy = 13144.4795 kcal/mol (13131.3993 without restraints) Performing minimization step: 844. Total energy = 13135.0066 kcal/mol (13121.9303 without restraints) Performing minimization step: 845. Total energy = 13125.5499 kcal/mol (13112.4774 without restraints) Performing minimization step: 846. Total energy = 13116.1093 kcal/mol (13103.0411 without restraints) Performing minimization step: 847. Total energy = 13106.6846 kcal/mol (13093.6200 without restraints) Performing minimization step: 848. Total energy = 13097.2752 kcal/mol (13084.2144 without restraints) Performing minimization step: 849. Total energy = 13087.8816 kcal/mol (13074.8248 without restraints) Performing minimization step: 850. Total energy = 13078.5040 kcal/mol (13065.4509 without restraints) Performing minimization step: 851. Total energy = 13069.1416 kcal/mol (13056.0926 without restraints) Performing minimization step: 852. Total energy = 13059.7948 kcal/mol (13046.7496 without restraints) Performing minimization step: 853. Total energy = 13050.4639 kcal/mol (13037.4227 without restraints) Performing minimization step: 854. Total energy = 13041.1485 kcal/mol (13028.1111 without restraints) Performing minimization step: 855. Total energy = 13031.8483 kcal/mol (13018.8148 without restraints) Performing minimization step: 856. Total energy = 13022.5640 kcal/mol (13009.5343 without restraints) Performing minimization step: 857. Total energy = 13013.2950 kcal/mol (13000.2691 without restraints) Performing minimization step: 858. Total energy = 13004.0413 kcal/mol (12991.0194 without restraints) Performing minimization step: 859. Total energy = 12994.8029 kcal/mol (12981.7849 without restraints) Performing minimization step: 860. Total energy = 12985.5803 kcal/mol (12972.5661 without restraints) Performing minimization step: 861. Total energy = 12976.3727 kcal/mol (12963.3623 without restraints) Performing minimization step: 862. Total energy = 12967.1803 kcal/mol (12954.1737 without restraints) Performing minimization step: 863. Total energy = 12958.0030 kcal/mol (12945.0003 without restraints) Performing minimization step: 864. Total energy = 12948.8404 kcal/mol (12935.8416 without restraints) Performing minimization step: 865. Total energy = 12939.6934 kcal/mol (12926.6984 without restraints) Performing minimization step: 866. Total energy = 12930.5616 kcal/mol (12917.5705 without restraints) Performing minimization step: 867. Total energy = 12921.4447 kcal/mol (12908.4574 without restraints) Performing minimization step: 868. Total energy = 12912.3425 kcal/mol (12899.3590 without restraints) Performing minimization step: 869. Total energy = 12903.2557 kcal/mol (12890.2759 without restraints) Performing minimization step: 870. Total energy = 12894.1833 kcal/mol (12881.2074 without restraints) Performing minimization step: 871. Total energy = 12885.1260 kcal/mol (12872.1539 without restraints) Performing minimization step: 872. Total energy = 12876.0835 kcal/mol (12863.1152 without restraints) Performing minimization step: 873. Total energy = 12867.0557 kcal/mol (12854.0913 without restraints) Performing minimization step: 874. Total energy = 12858.0426 kcal/mol (12845.0818 without restraints) Performing minimization step: 875. Total energy = 12849.0441 kcal/mol (12836.0871 without restraints) Performing minimization step: 876. Total energy = 12840.0605 kcal/mol (12827.1073 without restraints) Performing minimization step: 877. Total energy = 12831.0911 kcal/mol (12818.1418 without restraints) Performing minimization step: 878. Total energy = 12822.1363 kcal/mol (12809.1906 without restraints) Performing minimization step: 879. Total energy = 12813.1959 kcal/mol (12800.2541 without restraints) Performing minimization step: 880. Total energy = 12804.2701 kcal/mol (12791.3320 without restraints) Performing minimization step: 881. Total energy = 12795.3588 kcal/mol (12782.4245 without restraints) Performing minimization step: 882. Total energy = 12786.4616 kcal/mol (12773.5310 without restraints) Performing minimization step: 883. Total energy = 12777.5792 kcal/mol (12764.6524 without restraints) Performing minimization step: 884. Total energy = 12768.7109 kcal/mol (12755.7879 without restraints) Performing minimization step: 885. Total energy = 12759.8571 kcal/mol (12746.9378 without restraints) Performing minimization step: 886. Total energy = 12751.0168 kcal/mol (12738.1013 without restraints) Performing minimization step: 887. Total energy = 12742.1912 kcal/mol (12729.2794 without restraints) Performing minimization step: 888. Total energy = 12733.3795 kcal/mol (12720.4715 without restraints) Performing minimization step: 889. Total energy = 12724.5824 kcal/mol (12711.6781 without restraints) Performing minimization step: 890. Total energy = 12715.7992 kcal/mol (12702.8986 without restraints) Performing minimization step: 891. Total energy = 12707.0298 kcal/mol (12694.1329 without restraints) Performing minimization step: 892. Total energy = 12698.2746 kcal/mol (12685.3814 without restraints) Performing minimization step: 893. Total energy = 12689.5330 kcal/mol (12676.6435 without restraints) Performing minimization step: 894. Total energy = 12680.8055 kcal/mol (12667.9198 without restraints) Performing minimization step: 895. Total energy = 12672.0918 kcal/mol (12659.2098 without restraints) Performing minimization step: 896. Total energy = 12663.3923 kcal/mol (12650.5140 without restraints) Performing minimization step: 897. Total energy = 12654.7067 kcal/mol (12641.8322 without restraints) Performing minimization step: 898. Total energy = 12646.0347 kcal/mol (12633.1637 without restraints) Performing minimization step: 899. Total energy = 12637.3764 kcal/mol (12624.5091 without restraints) Performing minimization step: 900. Total energy = 12628.7319 kcal/mol (12615.8683 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 901. Total energy = 12620.1011 kcal/mol (12607.2412 without restraints) Performing minimization step: 902. Total energy = 12611.4842 kcal/mol (12598.6280 without restraints) Performing minimization step: 903. Total energy = 12602.8806 kcal/mol (12590.0280 without restraints) Performing minimization step: 904. Total energy = 12594.2905 kcal/mol (12581.4416 without restraints) Performing minimization step: 905. Total energy = 12585.7137 kcal/mol (12572.8685 without restraints) Performing minimization step: 906. Total energy = 12577.1508 kcal/mol (12564.3092 without restraints) Performing minimization step: 907. Total energy = 12568.6012 kcal/mol (12555.7633 without restraints) Performing minimization step: 908. Total energy = 12560.0652 kcal/mol (12547.2310 without restraints) Performing minimization step: 909. Total energy = 12551.5431 kcal/mol (12538.7126 without restraints) Performing minimization step: 910. Total energy = 12543.0336 kcal/mol (12530.2067 without restraints) Performing minimization step: 911. Total energy = 12534.5375 kcal/mol (12521.7145 without restraints) Performing minimization step: 912. Total energy = 12526.0552 kcal/mol (12513.2356 without restraints) Performing minimization step: 913. Total energy = 12517.5857 kcal/mol (12504.7697 without restraints) Performing minimization step: 914. Total energy = 12509.1291 kcal/mol (12496.3168 without restraints) Performing minimization step: 915. Total energy = 12500.6865 kcal/mol (12487.8778 without restraints) Performing minimization step: 916. Total energy = 12492.2572 kcal/mol (12479.4521 without restraints) Performing minimization step: 917. Total energy = 12483.8405 kcal/mol (12471.0391 without restraints) Performing minimization step: 918. Total energy = 12475.4365 kcal/mol (12462.6387 without restraints) Performing minimization step: 919. Total energy = 12467.0458 kcal/mol (12454.2516 without restraints) Performing minimization step: 920. Total energy = 12458.6678 kcal/mol (12445.8773 without restraints) Performing minimization step: 921. Total energy = 12450.3034 kcal/mol (12437.5165 without restraints) Performing minimization step: 922. Total energy = 12441.9518 kcal/mol (12429.1685 without restraints) Performing minimization step: 923. Total energy = 12433.6131 kcal/mol (12420.8333 without restraints) Performing minimization step: 924. Total energy = 12425.2870 kcal/mol (12412.5109 without restraints) Performing minimization step: 925. Total energy = 12416.9736 kcal/mol (12404.2011 without restraints) Performing minimization step: 926. Total energy = 12408.6732 kcal/mol (12395.9042 without restraints) Performing minimization step: 927. Total energy = 12400.3855 kcal/mol (12387.6201 without restraints) Performing minimization step: 928. Total energy = 12392.1108 kcal/mol (12379.3490 without restraints) Performing minimization step: 929. Total energy = 12383.8490 kcal/mol (12371.0907 without restraints) Performing minimization step: 930. Total energy = 12375.6002 kcal/mol (12362.8455 without restraints) Performing minimization step: 931. Total energy = 12367.3637 kcal/mol (12354.6128 without restraints) Performing minimization step: 932. Total energy = 12359.1399 kcal/mol (12346.3926 without restraints) Performing minimization step: 933. Total energy = 12350.9284 kcal/mol (12338.1846 without restraints) Performing minimization step: 934. Total energy = 12342.7292 kcal/mol (12329.9888 without restraints) Performing minimization step: 935. Total energy = 12334.5423 kcal/mol (12321.8055 without restraints) Performing minimization step: 936. Total energy = 12326.3682 kcal/mol (12313.6349 without restraints) Performing minimization step: 937. Total energy = 12318.2066 kcal/mol (12305.4770 without restraints) Performing minimization step: 938. Total energy = 12310.0573 kcal/mol (12297.3310 without restraints) Performing minimization step: 939. Total energy = 12301.9206 kcal/mol (12289.1980 without restraints) Performing minimization step: 940. Total energy = 12293.7960 kcal/mol (12281.0770 without restraints) Performing minimization step: 941. Total energy = 12285.6844 kcal/mol (12272.9690 without restraints) Performing minimization step: 942. Total energy = 12277.5843 kcal/mol (12264.8724 without restraints) Performing minimization step: 943. Total energy = 12269.4967 kcal/mol (12256.7883 without restraints) Performing minimization step: 944. Total energy = 12261.4217 kcal/mol (12248.7169 without restraints) Performing minimization step: 945. Total energy = 12253.3587 kcal/mol (12240.6574 without restraints) Performing minimization step: 946. Total energy = 12245.3077 kcal/mol (12232.6098 without restraints) Performing minimization step: 947. Total energy = 12237.2684 kcal/mol (12224.5740 without restraints) Performing minimization step: 948. Total energy = 12229.2415 kcal/mol (12216.5508 without restraints) Performing minimization step: 949. Total energy = 12221.2268 kcal/mol (12208.5395 without restraints) Performing minimization step: 950. Total energy = 12213.2246 kcal/mol (12200.5409 without restraints) Performing minimization step: 951. Total energy = 12205.2343 kcal/mol (12192.5541 without restraints) Performing minimization step: 952. Total energy = 12197.2555 kcal/mol (12184.5788 without restraints) Performing minimization step: 953. Total energy = 12189.2890 kcal/mol (12176.6158 without restraints) Performing minimization step: 954. Total energy = 12181.3343 kcal/mol (12168.6646 without restraints) Performing minimization step: 955. Total energy = 12173.3915 kcal/mol (12160.7253 without restraints) Performing minimization step: 956. Total energy = 12165.4601 kcal/mol (12152.7974 without restraints) Performing minimization step: 957. Total energy = 12157.5406 kcal/mol (12144.8814 without restraints) Performing minimization step: 958. Total energy = 12149.6333 kcal/mol (12136.9776 without restraints) Performing minimization step: 959. Total energy = 12141.7376 kcal/mol (12129.0854 without restraints) Performing minimization step: 960. Total energy = 12133.8541 kcal/mol (12121.2054 without restraints) Performing minimization step: 961. Total energy = 12125.9825 kcal/mol (12113.3371 without restraints) Performing minimization step: 962. Total energy = 12118.1222 kcal/mol (12105.4804 without restraints) Performing minimization step: 963. Total energy = 12110.2736 kcal/mol (12097.6353 without restraints) Performing minimization step: 964. Total energy = 12102.4367 kcal/mol (12089.8019 without restraints) Performing minimization step: 965. Total energy = 12094.6112 kcal/mol (12081.9796 without restraints) Performing minimization step: 966. Total energy = 12086.7972 kcal/mol (12074.1693 without restraints) Performing minimization step: 967. Total energy = 12078.9950 kcal/mol (12066.3704 without restraints) Performing minimization step: 968. Total energy = 12071.2037 kcal/mol (12058.5827 without restraints) Performing minimization step: 969. Total energy = 12063.4245 kcal/mol (12050.8070 without restraints) Performing minimization step: 970. Total energy = 12055.6569 kcal/mol (12043.0428 without restraints) Performing minimization step: 971. Total energy = 12047.9007 kcal/mol (12035.2900 without restraints) Performing minimization step: 972. Total energy = 12040.1558 kcal/mol (12027.5486 without restraints) Performing minimization step: 973. Total energy = 12032.4224 kcal/mol (12019.8187 without restraints) Performing minimization step: 974. Total energy = 12024.7008 kcal/mol (12012.1004 without restraints) Performing minimization step: 975. Total energy = 12016.9900 kcal/mol (12004.3931 without restraints) Performing minimization step: 976. Total energy = 12009.2907 kcal/mol (11996.6972 without restraints) Performing minimization step: 977. Total energy = 12001.6026 kcal/mol (11989.0126 without restraints) Performing minimization step: 978. Total energy = 11993.9256 kcal/mol (11981.3389 without restraints) Performing minimization step: 979. Total energy = 11986.2599 kcal/mol (11973.6768 without restraints) Performing minimization step: 980. Total energy = 11978.6059 kcal/mol (11966.0261 without restraints) Performing minimization step: 981. Total energy = 11970.9628 kcal/mol (11958.3865 without restraints) Performing minimization step: 982. Total energy = 11963.3305 kcal/mol (11950.7576 without restraints) Performing minimization step: 983. Total energy = 11955.7097 kcal/mol (11943.1403 without restraints) Performing minimization step: 984. Total energy = 11948.0993 kcal/mol (11935.5332 without restraints) Performing minimization step: 985. Total energy = 11940.5003 kcal/mol (11927.9377 without restraints) Performing minimization step: 986. Total energy = 11932.9130 kcal/mol (11920.3539 without restraints) Performing minimization step: 987. Total energy = 11925.3365 kcal/mol (11912.7806 without restraints) Performing minimization step: 988. Total energy = 11917.7709 kcal/mol (11905.2186 without restraints) Performing minimization step: 989. Total energy = 11910.2161 kcal/mol (11897.6671 without restraints) Performing minimization step: 990. Total energy = 11902.6724 kcal/mol (11890.1268 without restraints) Performing minimization step: 991. Total energy = 11895.1396 kcal/mol (11882.5974 without restraints) Performing minimization step: 992. Total energy = 11887.6174 kcal/mol (11875.0786 without restraints) Performing minimization step: 993. Total energy = 11880.1068 kcal/mol (11867.5715 without restraints) Performing minimization step: 994. Total energy = 11872.6068 kcal/mol (11860.0747 without restraints) Performing minimization step: 995. Total energy = 11865.1171 kcal/mol (11852.5884 without restraints) Performing minimization step: 996. Total energy = 11857.6385 kcal/mol (11845.1132 without restraints) Performing minimization step: 997. Total energy = 11850.1708 kcal/mol (11837.6490 without restraints) Performing minimization step: 998. Total energy = 11842.7139 kcal/mol (11830.1954 without restraints) Performing minimization step: 999. Total energy = 11835.2681 kcal/mol (11822.7529 without restraints) Performing minimization step: 1000. Total energy = 11827.8322 kcal/mol (11815.3204 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 11820.4072 kcal/mol (11807.8987 without restraints) Performing minimization step: 1002. Total energy = 11812.9931 kcal/mol (11800.4880 without restraints) Performing minimization step: 1003. Total energy = 11805.5893 kcal/mol (11793.0876 without restraints) Performing minimization step: 1004. Total energy = 11798.1963 kcal/mol (11785.6979 without restraints) Performing minimization step: 1005. Total energy = 11790.8139 kcal/mol (11778.3190 without restraints) Performing minimization step: 1006. Total energy = 11783.4420 kcal/mol (11770.9503 without restraints) Performing minimization step: 1007. Total energy = 11776.0803 kcal/mol (11763.5920 without restraints) Performing minimization step: 1008. Total energy = 11768.7295 kcal/mol (11756.2447 without restraints) Performing minimization step: 1009. Total energy = 11761.3894 kcal/mol (11748.9078 without restraints) Performing minimization step: 1010. Total energy = 11754.0591 kcal/mol (11741.5808 without restraints) Performing minimization step: 1011. Total energy = 11746.7397 kcal/mol (11734.2648 without restraints) Performing minimization step: 1012. Total energy = 11739.4311 kcal/mol (11726.9596 without restraints) Performing minimization step: 1013. Total energy = 11732.1324 kcal/mol (11719.6641 without restraints) Performing minimization step: 1014. Total energy = 11724.8440 kcal/mol (11712.3791 without restraints) Performing minimization step: 1015. Total energy = 11717.5662 kcal/mol (11705.1045 without restraints) Performing minimization step: 1016. Total energy = 11710.2978 kcal/mol (11697.8396 without restraints) Performing minimization step: 1017. Total energy = 11703.0403 kcal/mol (11690.5853 without restraints) Performing minimization step: 1018. Total energy = 11695.7935 kcal/mol (11683.3420 without restraints) Performing minimization step: 1019. Total energy = 11688.5566 kcal/mol (11676.1083 without restraints) Performing minimization step: 1020. Total energy = 11681.3298 kcal/mol (11668.8846 without restraints) Performing minimization step: 1021. Total energy = 11674.1131 kcal/mol (11661.6714 without restraints) Performing minimization step: 1022. Total energy = 11666.9069 kcal/mol (11654.4686 without restraints) Performing minimization step: 1023. Total energy = 11659.7110 kcal/mol (11647.2761 without restraints) Performing minimization step: 1024. Total energy = 11652.5252 kcal/mol (11640.0935 without restraints) Performing minimization step: 1025. Total energy = 11645.3495 kcal/mol (11632.9211 without restraints) Performing minimization step: 1026. Total energy = 11638.1840 kcal/mol (11625.7590 without restraints) Performing minimization step: 1027. Total energy = 11631.0288 kcal/mol (11618.6072 without restraints) Performing minimization step: 1028. Total energy = 11623.8832 kcal/mol (11611.4647 without restraints) Performing minimization step: 1029. Total energy = 11616.7478 kcal/mol (11604.3326 without restraints) Performing minimization step: 1030. Total energy = 11609.6225 kcal/mol (11597.2106 without restraints) Performing minimization step: 1031. Total energy = 11602.5069 kcal/mol (11590.0984 without restraints) Performing minimization step: 1032. Total energy = 11595.4018 kcal/mol (11582.9965 without restraints) Performing minimization step: 1033. Total energy = 11588.3060 kcal/mol (11575.9040 without restraints) Performing minimization step: 1034. Total energy = 11581.2200 kcal/mol (11568.8213 without restraints) Performing minimization step: 1035. Total energy = 11574.1437 kcal/mol (11561.7483 without restraints) Performing minimization step: 1036. Total energy = 11567.0778 kcal/mol (11554.6856 without restraints) Performing minimization step: 1037. Total energy = 11560.0216 kcal/mol (11547.6327 without restraints) Performing minimization step: 1038. Total energy = 11552.9755 kcal/mol (11540.5899 without restraints) Performing minimization step: 1039. Total energy = 11545.9390 kcal/mol (11533.5567 without restraints) Performing minimization step: 1040. Total energy = 11538.9128 kcal/mol (11526.5340 without restraints) Performing minimization step: 1041. Total energy = 11531.8962 kcal/mol (11519.5204 without restraints) Performing minimization step: 1042. Total energy = 11524.8890 kcal/mol (11512.5165 without restraints) Performing minimization step: 1043. Total energy = 11517.8915 kcal/mol (11505.5222 without restraints) Performing minimization step: 1044. Total energy = 11510.9043 kcal/mol (11498.5382 without restraints) Performing minimization step: 1045. Total energy = 11503.9257 kcal/mol (11491.5630 without restraints) Performing minimization step: 1046. Total energy = 11496.9576 kcal/mol (11484.5982 without restraints) Performing minimization step: 1047. Total energy = 11489.9992 kcal/mol (11477.6431 without restraints) Performing minimization step: 1048. Total energy = 11483.0505 kcal/mol (11470.6976 without restraints) Performing minimization step: 1049. Total energy = 11476.1111 kcal/mol (11463.7614 without restraints) Performing minimization step: 1050. Total energy = 11469.1816 kcal/mol (11456.8352 without restraints) Performing minimization step: 1051. Total energy = 11462.2609 kcal/mol (11449.9178 without restraints) Performing minimization step: 1052. Total energy = 11455.3504 kcal/mol (11443.0104 without restraints) Performing minimization step: 1053. Total energy = 11448.4489 kcal/mol (11436.1123 without restraints) Performing minimization step: 1054. Total energy = 11441.5571 kcal/mol (11429.2237 without restraints) Performing minimization step: 1055. Total energy = 11434.6750 kcal/mol (11422.3448 without restraints) Performing minimization step: 1056. Total energy = 11427.8023 kcal/mol (11415.4753 without restraints) Performing minimization step: 1057. Total energy = 11420.9389 kcal/mol (11408.6152 without restraints) Performing minimization step: 1058. Total energy = 11414.0853 kcal/mol (11401.7648 without restraints) Performing minimization step: 1059. Total energy = 11407.2409 kcal/mol (11394.9237 without restraints) Performing minimization step: 1060. Total energy = 11400.4058 kcal/mol (11388.0917 without restraints) Performing minimization step: 1061. Total energy = 11393.5800 kcal/mol (11381.2691 without restraints) Performing minimization step: 1062. Total energy = 11386.7643 kcal/mol (11374.4567 without restraints) Performing minimization step: 1063. Total energy = 11379.9572 kcal/mol (11367.6529 without restraints) Performing minimization step: 1064. Total energy = 11373.1600 kcal/mol (11360.8590 without restraints) Performing minimization step: 1065. Total energy = 11366.3721 kcal/mol (11354.0741 without restraints) Performing minimization step: 1066. Total energy = 11359.5932 kcal/mol (11347.2985 without restraints) Performing minimization step: 1067. Total energy = 11352.8233 kcal/mol (11340.5318 without restraints) Performing minimization step: 1068. Total energy = 11346.0624 kcal/mol (11333.7740 without restraints) Performing minimization step: 1069. Total energy = 11339.3110 kcal/mol (11327.0260 without restraints) Performing minimization step: 1070. Total energy = 11332.5689 kcal/mol (11320.2871 without restraints) Performing minimization step: 1071. Total energy = 11325.8360 kcal/mol (11313.5574 without restraints) Performing minimization step: 1072. Total energy = 11319.1124 kcal/mol (11306.8369 without restraints) Performing minimization step: 1073. Total energy = 11312.3978 kcal/mol (11300.1256 without restraints) Performing minimization step: 1074. Total energy = 11305.6923 kcal/mol (11293.4232 without restraints) Performing minimization step: 1075. Total energy = 11298.9962 kcal/mol (11286.7303 without restraints) Performing minimization step: 1076. Total energy = 11292.3091 kcal/mol (11280.0464 without restraints) Performing minimization step: 1077. Total energy = 11285.6304 kcal/mol (11273.3709 without restraints) Performing minimization step: 1078. Total energy = 11278.9610 kcal/mol (11266.7047 without restraints) Performing minimization step: 1079. Total energy = 11272.3008 kcal/mol (11260.0477 without restraints) Performing minimization step: 1080. Total energy = 11265.6497 kcal/mol (11253.3998 without restraints) Performing minimization step: 1081. Total energy = 11259.0078 kcal/mol (11246.7611 without restraints) Performing minimization step: 1082. Total energy = 11252.3751 kcal/mol (11240.1316 without restraints) Performing minimization step: 1083. Total energy = 11245.7513 kcal/mol (11233.5110 without restraints) Performing minimization step: 1084. Total energy = 11239.1362 kcal/mol (11226.8990 without restraints) Performing minimization step: 1085. Total energy = 11232.5300 kcal/mol (11220.2961 without restraints) Performing minimization step: 1086. Total energy = 11225.9327 kcal/mol (11213.7018 without restraints) Performing minimization step: 1087. Total energy = 11219.3437 kcal/mol (11207.1160 without restraints) Performing minimization step: 1088. Total energy = 11212.7642 kcal/mol (11200.5397 without restraints) Performing minimization step: 1089. Total energy = 11206.1929 kcal/mol (11193.9718 without restraints) Performing minimization step: 1090. Total energy = 11199.6310 kcal/mol (11187.4129 without restraints) Performing minimization step: 1091. Total energy = 11193.0774 kcal/mol (11180.8625 without restraints) Performing minimization step: 1092. Total energy = 11186.5334 kcal/mol (11174.3216 without restraints) Performing minimization step: 1093. Total energy = 11179.9976 kcal/mol (11167.7890 without restraints) Performing minimization step: 1094. Total energy = 11173.4709 kcal/mol (11161.2654 without restraints) Performing minimization step: 1095. Total energy = 11166.9529 kcal/mol (11154.7506 without restraints) Performing minimization step: 1096. Total energy = 11160.4436 kcal/mol (11148.2445 without restraints) Performing minimization step: 1097. Total energy = 11153.9433 kcal/mol (11141.7473 without restraints) Performing minimization step: 1098. Total energy = 11147.4515 kcal/mol (11135.2587 without restraints) Performing minimization step: 1099. Total energy = 11140.9689 kcal/mol (11128.7792 without restraints) Performing minimization step: 1100. Total energy = 11134.4948 kcal/mol (11122.3084 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 11128.0291 kcal/mol (11115.8458 without restraints) Performing minimization step: 1102. Total energy = 11121.5722 kcal/mol (11109.3920 without restraints) Performing minimization step: 1103. Total energy = 11115.1244 kcal/mol (11102.9473 without restraints) Performing minimization step: 1104. Total energy = 11108.6846 kcal/mol (11096.5106 without restraints) Performing minimization step: 1105. Total energy = 11102.2532 kcal/mol (11090.0822 without restraints) Performing minimization step: 1106. Total energy = 11095.8303 kcal/mol (11083.6627 without restraints) Performing minimization step: 1107. Total energy = 11089.4164 kcal/mol (11077.2519 without restraints) Performing minimization step: 1108. Total energy = 11083.0109 kcal/mol (11070.8496 without restraints) Performing minimization step: 1109. Total energy = 11076.6143 kcal/mol (11064.4561 without restraints) Performing minimization step: 1110. Total energy = 11070.2254 kcal/mol (11058.0704 without restraints) Performing minimization step: 1111. Total energy = 11063.8456 kcal/mol (11051.6937 without restraints) Performing minimization step: 1112. Total energy = 11057.4742 kcal/mol (11045.3253 without restraints) Performing minimization step: 1113. Total energy = 11051.1111 kcal/mol (11038.9652 without restraints) Performing minimization step: 1114. Total energy = 11044.7564 kcal/mol (11032.6138 without restraints) Performing minimization step: 1115. Total energy = 11038.4100 kcal/mol (11026.2706 without restraints) Performing minimization step: 1116. Total energy = 11032.0722 kcal/mol (11019.9359 without restraints) Performing minimization step: 1117. Total energy = 11025.7434 kcal/mol (11013.6102 without restraints) Performing minimization step: 1118. Total energy = 11019.4226 kcal/mol (11007.2925 without restraints) Performing minimization step: 1119. Total energy = 11013.1099 kcal/mol (11000.9829 without restraints) Performing minimization step: 1120. Total energy = 11006.8060 kcal/mol (10994.6822 without restraints) Performing minimization step: 1121. Total energy = 11000.5100 kcal/mol (10988.3893 without restraints) Performing minimization step: 1122. Total energy = 10994.2220 kcal/mol (10982.1042 without restraints) Performing minimization step: 1123. Total energy = 10987.9428 kcal/mol (10975.8283 without restraints) Performing minimization step: 1124. Total energy = 10981.6717 kcal/mol (10969.5603 without restraints) Performing minimization step: 1125. Total energy = 10975.4091 kcal/mol (10963.3008 without restraints) Performing minimization step: 1126. Total energy = 10969.1547 kcal/mol (10957.0495 without restraints) Performing minimization step: 1127. Total energy = 10962.9090 kcal/mol (10950.8069 without restraints) Performing minimization step: 1128. Total energy = 10956.6712 kcal/mol (10944.5721 without restraints) Performing minimization step: 1129. Total energy = 10950.4411 kcal/mol (10938.3451 without restraints) Performing minimization step: 1130. Total energy = 10944.2195 kcal/mol (10932.1268 without restraints) Performing minimization step: 1131. Total energy = 10938.0062 kcal/mol (10925.9165 without restraints) Performing minimization step: 1132. Total energy = 10931.8009 kcal/mol (10919.7141 without restraints) Performing minimization step: 1133. Total energy = 10925.6039 kcal/mol (10913.5204 without restraints) Performing minimization step: 1134. Total energy = 10919.4153 kcal/mol (10907.3349 without restraints) Performing minimization step: 1135. Total energy = 10913.2349 kcal/mol (10901.1575 without restraints) Performing minimization step: 1136. Total energy = 10907.0623 kcal/mol (10894.9883 without restraints) Performing minimization step: 1137. Total energy = 10900.8979 kcal/mol (10888.8268 without restraints) Performing minimization step: 1138. Total energy = 10894.7415 kcal/mol (10882.6733 without restraints) Performing minimization step: 1139. Total energy = 10888.5933 kcal/mol (10876.5284 without restraints) Performing minimization step: 1140. Total energy = 10882.4532 kcal/mol (10870.3913 without restraints) Performing minimization step: 1141. Total energy = 10876.3212 kcal/mol (10864.2622 without restraints) Performing minimization step: 1142. Total energy = 10870.1968 kcal/mol (10858.1411 without restraints) Performing minimization step: 1143. Total energy = 10864.0807 kcal/mol (10852.0281 without restraints) Performing minimization step: 1144. Total energy = 10857.9728 kcal/mol (10845.9232 without restraints) Performing minimization step: 1145. Total energy = 10851.8723 kcal/mol (10839.8258 without restraints) Performing minimization step: 1146. Total energy = 10845.7802 kcal/mol (10833.7369 without restraints) Performing minimization step: 1147. Total energy = 10839.6960 kcal/mol (10827.6556 without restraints) Performing minimization step: 1148. Total energy = 10833.6195 kcal/mol (10821.5822 without restraints) Performing minimization step: 1149. Total energy = 10827.5514 kcal/mol (10815.5173 without restraints) Performing minimization step: 1150. Total energy = 10821.4907 kcal/mol (10809.4594 without restraints) Performing minimization step: 1151. Total energy = 10815.4377 kcal/mol (10803.4095 without restraints) Performing minimization step: 1152. Total energy = 10809.3930 kcal/mol (10797.3679 without restraints) Performing minimization step: 1153. Total energy = 10803.3561 kcal/mol (10791.3341 without restraints) Performing minimization step: 1154. Total energy = 10797.3272 kcal/mol (10785.3083 without restraints) Performing minimization step: 1155. Total energy = 10791.3066 kcal/mol (10779.2907 without restraints) Performing minimization step: 1156. Total energy = 10785.2935 kcal/mol (10773.2808 without restraints) Performing minimization step: 1157. Total energy = 10779.2881 kcal/mol (10767.2784 without restraints) Performing minimization step: 1158. Total energy = 10773.2901 kcal/mol (10761.2834 without restraints) Performing minimization step: 1159. Total energy = 10767.3003 kcal/mol (10755.2968 without restraints) Performing minimization step: 1160. Total energy = 10761.3183 kcal/mol (10749.3177 without restraints) Performing minimization step: 1161. Total energy = 10755.3439 kcal/mol (10743.3464 without restraints) Performing minimization step: 1162. Total energy = 10749.3776 kcal/mol (10737.3832 without restraints) Performing minimization step: 1163. Total energy = 10743.4190 kcal/mol (10731.4275 without restraints) Performing minimization step: 1164. Total energy = 10737.4683 kcal/mol (10725.4799 without restraints) Performing minimization step: 1165. Total energy = 10731.5250 kcal/mol (10719.5397 without restraints) Performing minimization step: 1166. Total energy = 10725.5890 kcal/mol (10713.6067 without restraints) Performing minimization step: 1167. Total energy = 10719.6613 kcal/mol (10707.6820 without restraints) Performing minimization step: 1168. Total energy = 10713.7411 kcal/mol (10701.7648 without restraints) Performing minimization step: 1169. Total energy = 10707.8285 kcal/mol (10695.8553 without restraints) Performing minimization step: 1170. Total energy = 10701.9232 kcal/mol (10689.9531 without restraints) Performing minimization step: 1171. Total energy = 10696.0256 kcal/mol (10684.0584 without restraints) Performing minimization step: 1172. Total energy = 10690.1356 kcal/mol (10678.1715 without restraints) Performing minimization step: 1173. Total energy = 10684.2532 kcal/mol (10672.2922 without restraints) Performing minimization step: 1174. Total energy = 10678.3783 kcal/mol (10666.4203 without restraints) Performing minimization step: 1175. Total energy = 10672.5115 kcal/mol (10660.5565 without restraints) Performing minimization step: 1176. Total energy = 10666.6519 kcal/mol (10654.6999 without restraints) Performing minimization step: 1177. Total energy = 10660.7998 kcal/mol (10648.8509 without restraints) Performing minimization step: 1178. Total energy = 10654.9552 kcal/mol (10643.0094 without restraints) Performing minimization step: 1179. Total energy = 10649.1185 kcal/mol (10637.1757 without restraints) Performing minimization step: 1180. Total energy = 10643.2891 kcal/mol (10631.3492 without restraints) Performing minimization step: 1181. Total energy = 10637.4669 kcal/mol (10625.5300 without restraints) Performing minimization step: 1182. Total energy = 10631.6520 kcal/mol (10619.7183 without restraints) Performing minimization step: 1183. Total energy = 10625.8449 kcal/mol (10613.9141 without restraints) Performing minimization step: 1184. Total energy = 10620.0453 kcal/mol (10608.1175 without restraints) Performing minimization step: 1185. Total energy = 10614.2530 kcal/mol (10602.3282 without restraints) Performing minimization step: 1186. Total energy = 10608.4685 kcal/mol (10596.5467 without restraints) Performing minimization step: 1187. Total energy = 10602.6915 kcal/mol (10590.7728 without restraints) Performing minimization step: 1188. Total energy = 10596.9216 kcal/mol (10585.0059 without restraints) Performing minimization step: 1189. Total energy = 10591.1592 kcal/mol (10579.2464 without restraints) Performing minimization step: 1190. Total energy = 10585.4040 kcal/mol (10573.4943 without restraints) Performing minimization step: 1191. Total energy = 10579.6562 kcal/mol (10567.7494 without restraints) Performing minimization step: 1192. Total energy = 10573.9161 kcal/mol (10562.0124 without restraints) Performing minimization step: 1193. Total energy = 10568.1831 kcal/mol (10556.2826 without restraints) Performing minimization step: 1194. Total energy = 10562.4575 kcal/mol (10550.5599 without restraints) Performing minimization step: 1195. Total energy = 10556.7395 kcal/mol (10544.8448 without restraints) Performing minimization step: 1196. Total energy = 10551.0287 kcal/mol (10539.1371 without restraints) Performing minimization step: 1197. Total energy = 10545.3249 kcal/mol (10533.4362 without restraints) Performing minimization step: 1198. Total energy = 10539.6285 kcal/mol (10527.7429 without restraints) Performing minimization step: 1199. Total energy = 10533.9392 kcal/mol (10522.0564 without restraints) Performing minimization step: 1200. Total energy = 10528.2573 kcal/mol (10516.3776 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 10522.5825 kcal/mol (10510.7056 without restraints) Performing minimization step: 1202. Total energy = 10516.9148 kcal/mol (10505.0411 without restraints) Performing minimization step: 1203. Total energy = 10511.2546 kcal/mol (10499.3838 without restraints) Performing minimization step: 1204. Total energy = 10505.6015 kcal/mol (10493.7337 without restraints) Performing minimization step: 1205. Total energy = 10499.9558 kcal/mol (10488.0910 without restraints) Performing minimization step: 1206. Total energy = 10494.3171 kcal/mol (10482.4553 without restraints) Performing minimization step: 1207. Total energy = 10488.6855 kcal/mol (10476.8267 without restraints) Performing minimization step: 1208. Total energy = 10483.0609 kcal/mol (10471.2051 without restraints) Performing minimization step: 1209. Total energy = 10477.4434 kcal/mol (10465.5904 without restraints) Performing minimization step: 1210. Total energy = 10471.8334 kcal/mol (10459.9835 without restraints) Performing minimization step: 1211. Total energy = 10466.2302 kcal/mol (10454.3833 without restraints) Performing minimization step: 1212. Total energy = 10460.6343 kcal/mol (10448.7904 without restraints) Performing minimization step: 1213. Total energy = 10455.0456 kcal/mol (10443.2047 without restraints) Performing minimization step: 1214. Total energy = 10449.4637 kcal/mol (10437.6258 without restraints) Performing minimization step: 1215. Total energy = 10443.8895 kcal/mol (10432.0545 without restraints) Performing minimization step: 1216. Total energy = 10438.3220 kcal/mol (10426.4900 without restraints) Performing minimization step: 1217. Total energy = 10432.7618 kcal/mol (10420.9327 without restraints) Performing minimization step: 1218. Total energy = 10427.2084 kcal/mol (10415.3823 without restraints) Performing minimization step: 1219. Total energy = 10421.6619 kcal/mol (10409.8388 without restraints) Performing minimization step: 1220. Total energy = 10416.1226 kcal/mol (10404.3025 without restraints) Performing minimization step: 1221. Total energy = 10410.5903 kcal/mol (10398.7732 without restraints) Performing minimization step: 1222. Total energy = 10405.0650 kcal/mol (10393.2509 without restraints) Performing minimization step: 1223. Total energy = 10399.5467 kcal/mol (10387.7355 without restraints) Performing minimization step: 1224. Total energy = 10394.0353 kcal/mol (10382.2270 without restraints) Performing minimization step: 1225. Total energy = 10388.5309 kcal/mol (10376.7256 without restraints) Performing minimization step: 1226. Total energy = 10383.0332 kcal/mol (10371.2309 without restraints) Performing minimization step: 1227. Total energy = 10377.5429 kcal/mol (10365.7435 without restraints) Performing minimization step: 1228. Total energy = 10372.0592 kcal/mol (10360.2628 without restraints) Performing minimization step: 1229. Total energy = 10366.5824 kcal/mol (10354.7891 without restraints) Performing minimization step: 1230. Total energy = 10361.1124 kcal/mol (10349.3218 without restraints) Performing minimization step: 1231. Total energy = 10355.6495 kcal/mol (10343.8619 without restraints) Performing minimization step: 1232. Total energy = 10350.1935 kcal/mol (10338.4089 without restraints) Performing minimization step: 1233. Total energy = 10344.7444 kcal/mol (10332.9627 without restraints) Performing minimization step: 1234. Total energy = 10339.3021 kcal/mol (10327.5235 without restraints) Performing minimization step: 1235. Total energy = 10333.8665 kcal/mol (10322.0908 without restraints) Performing minimization step: 1236. Total energy = 10328.4383 kcal/mol (10316.6656 without restraints) Performing minimization step: 1237. Total energy = 10323.0171 kcal/mol (10311.2474 without restraints) Performing minimization step: 1238. Total energy = 10317.6023 kcal/mol (10305.8354 without restraints) Performing minimization step: 1239. Total energy = 10312.1940 kcal/mol (10300.4300 without restraints) Performing minimization step: 1240. Total energy = 10306.7925 kcal/mol (10295.0315 without restraints) Performing minimization step: 1241. Total energy = 10301.3980 kcal/mol (10289.6399 without restraints) Performing minimization step: 1242. Total energy = 10296.0103 kcal/mol (10284.2552 without restraints) Performing minimization step: 1243. Total energy = 10290.6292 kcal/mol (10278.8771 without restraints) Performing minimization step: 1244. Total energy = 10285.2548 kcal/mol (10273.5055 without restraints) Performing minimization step: 1245. Total energy = 10279.8872 kcal/mol (10268.1408 without restraints) Performing minimization step: 1246. Total energy = 10274.5266 kcal/mol (10262.7834 without restraints) Performing minimization step: 1247. Total energy = 10269.1728 kcal/mol (10257.4323 without restraints) Performing minimization step: 1248. Total energy = 10263.8260 kcal/mol (10252.0885 without restraints) Performing minimization step: 1249. Total energy = 10258.4853 kcal/mol (10246.7508 without restraints) Performing minimization step: 1250. Total energy = 10253.1510 kcal/mol (10241.4194 without restraints) Performing minimization step: 1251. Total energy = 10247.8239 kcal/mol (10236.0953 without restraints) Performing minimization step: 1252. Total energy = 10242.5037 kcal/mol (10230.7780 without restraints) Performing minimization step: 1253. Total energy = 10237.1898 kcal/mol (10225.4670 without restraints) Performing minimization step: 1254. Total energy = 10231.8826 kcal/mol (10220.1627 without restraints) Performing minimization step: 1255. Total energy = 10226.5820 kcal/mol (10214.8650 without restraints) Performing minimization step: 1256. Total energy = 10221.2882 kcal/mol (10209.5741 without restraints) Performing minimization step: 1257. Total energy = 10216.0008 kcal/mol (10204.2897 without restraints) Performing minimization step: 1258. Total energy = 10210.7199 kcal/mol (10199.0117 without restraints) Performing minimization step: 1259. Total energy = 10205.4456 kcal/mol (10193.7402 without restraints) Performing minimization step: 1260. Total energy = 10200.1779 kcal/mol (10188.4755 without restraints) Performing minimization step: 1261. Total energy = 10194.9169 kcal/mol (10183.2174 without restraints) Performing minimization step: 1262. Total energy = 10189.6624 kcal/mol (10177.9658 without restraints) Performing minimization step: 1263. Total energy = 10184.4142 kcal/mol (10172.7206 without restraints) Performing minimization step: 1264. Total energy = 10179.1728 kcal/mol (10167.4821 without restraints) Performing minimization step: 1265. Total energy = 10173.9380 kcal/mol (10162.2502 without restraints) Performing minimization step: 1266. Total energy = 10168.7094 kcal/mol (10157.0246 without restraints) Performing minimization step: 1267. Total energy = 10163.4878 kcal/mol (10151.8059 without restraints) Performing minimization step: 1268. Total energy = 10158.2729 kcal/mol (10146.5938 without restraints) Performing minimization step: 1269. Total energy = 10153.0642 kcal/mol (10141.3881 without restraints) Performing minimization step: 1270. Total energy = 10147.8619 kcal/mol (10136.1889 without restraints) Performing minimization step: 1271. Total energy = 10142.6659 kcal/mol (10130.9954 without restraints) Performing minimization step: 1272. Total energy = 10137.4763 kcal/mol (10125.8089 without restraints) Performing minimization step: 1273. Total energy = 10132.2933 kcal/mol (10120.6288 without restraints) Performing minimization step: 1274. Total energy = 10127.1167 kcal/mol (10115.4552 without restraints) Performing minimization step: 1275. Total energy = 10121.9467 kcal/mol (10110.2880 without restraints) Performing minimization step: 1276. Total energy = 10116.7830 kcal/mol (10105.1272 without restraints) Performing minimization step: 1277. Total energy = 10111.6257 kcal/mol (10099.9728 without restraints) Performing minimization step: 1278. Total energy = 10106.4748 kcal/mol (10094.8247 without restraints) Performing minimization step: 1279. Total energy = 10101.3300 kcal/mol (10089.6829 without restraints) Performing minimization step: 1280. Total energy = 10096.1920 kcal/mol (10084.5479 without restraints) Performing minimization step: 1281. Total energy = 10091.0604 kcal/mol (10079.4191 without restraints) Performing minimization step: 1282. Total energy = 10085.9350 kcal/mol (10074.2966 without restraints) Performing minimization step: 1283. Total energy = 10080.8159 kcal/mol (10069.1804 without restraints) Performing minimization step: 1284. Total energy = 10075.7037 kcal/mol (10064.0711 without restraints) Performing minimization step: 1285. Total energy = 10070.5974 kcal/mol (10058.9678 without restraints) Performing minimization step: 1286. Total energy = 10065.4975 kcal/mol (10053.8707 without restraints) Performing minimization step: 1287. Total energy = 10060.4038 kcal/mol (10048.7799 without restraints) Performing minimization step: 1288. Total energy = 10055.3164 kcal/mol (10043.6954 without restraints) Performing minimization step: 1289. Total energy = 10050.2354 kcal/mol (10038.6173 without restraints) Performing minimization step: 1290. Total energy = 10045.1607 kcal/mol (10033.5455 without restraints) Performing minimization step: 1291. Total energy = 10040.0924 kcal/mol (10028.4801 without restraints) Performing minimization step: 1292. Total energy = 10035.0301 kcal/mol (10023.4206 without restraints) Performing minimization step: 1293. Total energy = 10029.9744 kcal/mol (10018.3679 without restraints) Performing minimization step: 1294. Total energy = 10024.9246 kcal/mol (10013.3208 without restraints) Performing minimization step: 1295. Total energy = 10019.8809 kcal/mol (10008.2801 without restraints) Performing minimization step: 1296. Total energy = 10014.8432 kcal/mol (10003.2452 without restraints) Performing minimization step: 1297. Total energy = 10009.8122 kcal/mol (9998.2172 without restraints) Performing minimization step: 1298. Total energy = 10004.7873 kcal/mol (9993.1951 without restraints) Performing minimization step: 1299. Total energy = 9999.7686 kcal/mol (9988.1794 without restraints) Performing minimization step: 1300. Total energy = 9994.7563 kcal/mol (9983.1699 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 9989.7508 kcal/mol (9978.1674 without restraints) Performing minimization step: 1302. Total energy = 9984.7507 kcal/mol (9973.1700 without restraints) Performing minimization step: 1303. Total energy = 9979.7565 kcal/mol (9968.1787 without restraints) Performing minimization step: 1304. Total energy = 9974.7683 kcal/mol (9963.1934 without restraints) Performing minimization step: 1305. Total energy = 9969.7865 kcal/mol (9958.2145 without restraints) Performing minimization step: 1306. Total energy = 9964.8107 kcal/mol (9953.2414 without restraints) Performing minimization step: 1307. Total energy = 9959.8410 kcal/mol (9948.2747 without restraints) Performing minimization step: 1308. Total energy = 9954.8777 kcal/mol (9943.3144 without restraints) Performing minimization step: 1309. Total energy = 9949.9203 kcal/mol (9938.3596 without restraints) Performing minimization step: 1310. Total energy = 9944.9694 kcal/mol (9933.4117 without restraints) Performing minimization step: 1311. Total energy = 9940.0242 kcal/mol (9928.4694 without restraints) Performing minimization step: 1312. Total energy = 9935.0850 kcal/mol (9923.5332 without restraints) Performing minimization step: 1313. Total energy = 9930.1518 kcal/mol (9918.6027 without restraints) Performing minimization step: 1314. Total energy = 9925.2246 kcal/mol (9913.6784 without restraints) Performing minimization step: 1315. Total energy = 9920.3037 kcal/mol (9908.7603 without restraints) Performing minimization step: 1316. Total energy = 9915.3889 kcal/mol (9903.8484 without restraints) Performing minimization step: 1317. Total energy = 9910.4798 kcal/mol (9898.9420 without restraints) Performing minimization step: 1318. Total energy = 9905.5766 kcal/mol (9894.0418 without restraints) Performing minimization step: 1319. Total energy = 9900.6794 kcal/mol (9889.1475 without restraints) Performing minimization step: 1320. Total energy = 9895.7882 kcal/mol (9884.2591 without restraints) Performing minimization step: 1321. Total energy = 9890.9035 kcal/mol (9879.3771 without restraints) Performing minimization step: 1322. Total energy = 9886.0245 kcal/mol (9874.5011 without restraints) Performing minimization step: 1323. Total energy = 9881.1513 kcal/mol (9869.6308 without restraints) Performing minimization step: 1324. Total energy = 9876.2843 kcal/mol (9864.7667 without restraints) Performing minimization step: 1325. Total energy = 9871.4234 kcal/mol (9859.9087 without restraints) Performing minimization step: 1326. Total energy = 9866.5686 kcal/mol (9855.0568 without restraints) Performing minimization step: 1327. Total energy = 9861.7194 kcal/mol (9850.2103 without restraints) Performing minimization step: 1328. Total energy = 9856.8766 kcal/mol (9845.3703 without restraints) Performing minimization step: 1329. Total energy = 9852.0397 kcal/mol (9840.5363 without restraints) Performing minimization step: 1330. Total energy = 9847.2083 kcal/mol (9835.7079 without restraints) Performing minimization step: 1331. Total energy = 9842.3830 kcal/mol (9830.8853 without restraints) Performing minimization step: 1332. Total energy = 9837.5636 kcal/mol (9826.0687 without restraints) Performing minimization step: 1333. Total energy = 9832.7498 kcal/mol (9821.2578 without restraints) Performing minimization step: 1334. Total energy = 9827.9417 kcal/mol (9816.4525 without restraints) Performing minimization step: 1335. Total energy = 9823.1399 kcal/mol (9811.6536 without restraints) Performing minimization step: 1336. Total energy = 9818.3438 kcal/mol (9806.8603 without restraints) Performing minimization step: 1337. Total energy = 9813.5534 kcal/mol (9802.0727 without restraints) Performing minimization step: 1338. Total energy = 9808.7688 kcal/mol (9797.2910 without restraints) Performing minimization step: 1339. Total energy = 9803.9902 kcal/mol (9792.5153 without restraints) Performing minimization step: 1340. Total energy = 9799.2174 kcal/mol (9787.7453 without restraints) Performing minimization step: 1341. Total energy = 9794.4507 kcal/mol (9782.9814 without restraints) Performing minimization step: 1342. Total energy = 9789.6894 kcal/mol (9778.2229 without restraints) Performing minimization step: 1343. Total energy = 9784.9340 kcal/mol (9773.4703 without restraints) Performing minimization step: 1344. Total energy = 9780.1841 kcal/mol (9768.7233 without restraints) Performing minimization step: 1345. Total energy = 9775.4404 kcal/mol (9763.9824 without restraints) Performing minimization step: 1346. Total energy = 9770.7018 kcal/mol (9759.2467 without restraints) Performing minimization step: 1347. Total energy = 9765.9691 kcal/mol (9754.5169 without restraints) Performing minimization step: 1348. Total energy = 9761.2424 kcal/mol (9749.7929 without restraints) Performing minimization step: 1349. Total energy = 9756.5214 kcal/mol (9745.0748 without restraints) Performing minimization step: 1350. Total energy = 9751.8059 kcal/mol (9740.3621 without restraints) Performing minimization step: 1351. Total energy = 9747.0963 kcal/mol (9735.6553 without restraints) Performing minimization step: 1352. Total energy = 9742.3927 kcal/mol (9730.9546 without restraints) Performing minimization step: 1353. Total energy = 9737.6945 kcal/mol (9726.2593 without restraints) Performing minimization step: 1354. Total energy = 9733.0021 kcal/mol (9721.5696 without restraints) Performing minimization step: 1355. Total energy = 9728.3153 kcal/mol (9716.8857 without restraints) Performing minimization step: 1356. Total energy = 9723.6341 kcal/mol (9712.2071 without restraints) Performing minimization step: 1357. Total energy = 9718.9585 kcal/mol (9707.5345 without restraints) Performing minimization step: 1358. Total energy = 9714.2888 kcal/mol (9702.8676 without restraints) Performing minimization step: 1359. Total energy = 9709.6244 kcal/mol (9698.2060 without restraints) Performing minimization step: 1360. Total energy = 9704.9659 kcal/mol (9693.5503 without restraints) Performing minimization step: 1361. Total energy = 9700.3133 kcal/mol (9688.9006 without restraints) Performing minimization step: 1362. Total energy = 9695.6660 kcal/mol (9684.2561 without restraints) Performing minimization step: 1363. Total energy = 9691.0242 kcal/mol (9679.6171 without restraints) Performing minimization step: 1364. Total energy = 9686.3883 kcal/mol (9674.9840 without restraints) Performing minimization step: 1365. Total energy = 9681.7578 kcal/mol (9670.3563 without restraints) Performing minimization step: 1366. Total energy = 9677.1326 kcal/mol (9665.7340 without restraints) Performing minimization step: 1367. Total energy = 9672.5135 kcal/mol (9661.1176 without restraints) Performing minimization step: 1368. Total energy = 9667.8997 kcal/mol (9656.5067 without restraints) Performing minimization step: 1369. Total energy = 9663.2915 kcal/mol (9651.9012 without restraints) Performing minimization step: 1370. Total energy = 9658.6887 kcal/mol (9647.3013 without restraints) Performing minimization step: 1371. Total energy = 9654.0916 kcal/mol (9642.7069 without restraints) Performing minimization step: 1372. Total energy = 9649.5008 kcal/mol (9638.1190 without restraints) Performing minimization step: 1373. Total energy = 9644.9145 kcal/mol (9633.5355 without restraints) Performing minimization step: 1374. Total energy = 9640.3340 kcal/mol (9628.9578 without restraints) Performing minimization step: 1375. Total energy = 9635.7589 kcal/mol (9624.3856 without restraints) Performing minimization step: 1376. Total energy = 9631.1894 kcal/mol (9619.8188 without restraints) Performing minimization step: 1377. Total energy = 9626.6253 kcal/mol (9615.2576 without restraints) Performing minimization step: 1378. Total energy = 9622.0668 kcal/mol (9610.7018 without restraints) Performing minimization step: 1379. Total energy = 9617.5137 kcal/mol (9606.1515 without restraints) Performing minimization step: 1380. Total energy = 9612.9664 kcal/mol (9601.6071 without restraints) Performing minimization step: 1381. Total energy = 9608.4242 kcal/mol (9597.0676 without restraints) Performing minimization step: 1382. Total energy = 9603.8874 kcal/mol (9592.5337 without restraints) Performing minimization step: 1383. Total energy = 9599.3561 kcal/mol (9588.0049 without restraints) Performing minimization step: 1384. Total energy = 9594.8296 kcal/mol (9583.4814 without restraints) Performing minimization step: 1385. Total energy = 9590.3094 kcal/mol (9578.9639 without restraints) Performing minimization step: 1386. Total energy = 9585.7941 kcal/mol (9574.4515 without restraints) Performing minimization step: 1387. Total energy = 9581.2842 kcal/mol (9569.9444 without restraints) Performing minimization step: 1388. Total energy = 9576.7797 kcal/mol (9565.4427 without restraints) Performing minimization step: 1389. Total energy = 9572.2808 kcal/mol (9560.9467 without restraints) Performing minimization step: 1390. Total energy = 9567.7878 kcal/mol (9556.4564 without restraints) Performing minimization step: 1391. Total energy = 9563.2997 kcal/mol (9551.9713 without restraints) Performing minimization step: 1392. Total energy = 9558.8171 kcal/mol (9547.4912 without restraints) Performing minimization step: 1393. Total energy = 9554.3394 kcal/mol (9543.0163 without restraints) Performing minimization step: 1394. Total energy = 9549.8679 kcal/mol (9538.5478 without restraints) Performing minimization step: 1395. Total energy = 9545.4010 kcal/mol (9534.0835 without restraints) Performing minimization step: 1396. Total energy = 9540.9395 kcal/mol (9529.6249 without restraints) Performing minimization step: 1397. Total energy = 9536.4827 kcal/mol (9525.1709 without restraints) Performing minimization step: 1398. Total energy = 9532.0324 kcal/mol (9520.7234 without restraints) Performing minimization step: 1399. Total energy = 9527.5869 kcal/mol (9516.2805 without restraints) Performing minimization step: 1400. Total energy = 9523.1469 kcal/mol (9511.8434 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 9518.7121 kcal/mol (9507.4114 without restraints) Performing minimization step: 1402. Total energy = 9514.2825 kcal/mol (9502.9846 without restraints) Performing minimization step: 1403. Total energy = 9509.8582 kcal/mol (9498.5630 without restraints) Performing minimization step: 1404. Total energy = 9505.4393 kcal/mol (9494.1469 without restraints) Performing minimization step: 1405. Total energy = 9501.0258 kcal/mol (9489.7362 without restraints) Performing minimization step: 1406. Total energy = 9496.6177 kcal/mol (9485.3309 without restraints) Performing minimization step: 1407. Total energy = 9492.2140 kcal/mol (9480.9300 without restraints) Performing minimization step: 1408. Total energy = 9487.8158 kcal/mol (9476.5346 without restraints) Performing minimization step: 1409. Total energy = 9483.4229 kcal/mol (9472.1444 without restraints) Performing minimization step: 1410. Total energy = 9479.0352 kcal/mol (9467.7595 without restraints) Performing minimization step: 1411. Total energy = 9474.6526 kcal/mol (9463.3797 without restraints) Performing minimization step: 1412. Total energy = 9470.2753 kcal/mol (9459.0052 without restraints) Performing minimization step: 1413. Total energy = 9465.9032 kcal/mol (9454.6357 without restraints) Performing minimization step: 1414. Total energy = 9461.5360 kcal/mol (9450.2714 without restraints) Performing minimization step: 1415. Total energy = 9457.1742 kcal/mol (9445.9124 without restraints) Performing minimization step: 1416. Total energy = 9452.8169 kcal/mol (9441.5577 without restraints) Performing minimization step: 1417. Total energy = 9448.4653 kcal/mol (9437.2090 without restraints) Performing minimization step: 1418. Total energy = 9444.1189 kcal/mol (9432.8654 without restraints) Performing minimization step: 1419. Total energy = 9439.7776 kcal/mol (9428.5268 without restraints) Performing minimization step: 1420. Total energy = 9435.4417 kcal/mol (9424.1937 without restraints) Performing minimization step: 1421. Total energy = 9431.1109 kcal/mol (9419.8657 without restraints) Performing minimization step: 1422. Total energy = 9426.7849 kcal/mol (9415.5424 without restraints) Performing minimization step: 1423. Total energy = 9422.4643 kcal/mol (9411.2245 without restraints) Performing minimization step: 1424. Total energy = 9418.1488 kcal/mol (9406.9118 without restraints) Performing minimization step: 1425. Total energy = 9413.8378 kcal/mol (9402.6036 without restraints) Performing minimization step: 1426. Total energy = 9409.5328 kcal/mol (9398.3015 without restraints) Performing minimization step: 1427. Total energy = 9405.2325 kcal/mol (9394.0039 without restraints) Performing minimization step: 1428. Total energy = 9400.9372 kcal/mol (9389.7113 without restraints) Performing minimization step: 1429. Total energy = 9396.6471 kcal/mol (9385.4239 without restraints) Performing minimization step: 1430. Total energy = 9392.3616 kcal/mol (9381.1413 without restraints) Performing minimization step: 1431. Total energy = 9388.0818 kcal/mol (9376.8641 without restraints) Performing minimization step: 1432. Total energy = 9383.8065 kcal/mol (9372.5917 without restraints) Performing minimization step: 1433. Total energy = 9379.5364 kcal/mol (9368.3243 without restraints) Performing minimization step: 1434. Total energy = 9375.2714 kcal/mol (9364.0621 without restraints) Performing minimization step: 1435. Total energy = 9371.0113 kcal/mol (9359.8047 without restraints) Performing minimization step: 1436. Total energy = 9366.7568 kcal/mol (9355.5529 without restraints) Performing minimization step: 1437. Total energy = 9362.5064 kcal/mol (9351.3051 without restraints) Performing minimization step: 1438. Total energy = 9358.2610 kcal/mol (9347.0627 without restraints) Performing minimization step: 1439. Total energy = 9354.0210 kcal/mol (9342.8254 without restraints) Performing minimization step: 1440. Total energy = 9349.7858 kcal/mol (9338.5930 without restraints) Performing minimization step: 1441. Total energy = 9345.5557 kcal/mol (9334.3656 without restraints) Performing minimization step: 1442. Total energy = 9341.3299 kcal/mol (9330.1425 without restraints) Performing minimization step: 1443. Total energy = 9337.1095 kcal/mol (9325.9249 without restraints) Performing minimization step: 1444. Total energy = 9332.8943 kcal/mol (9321.7124 without restraints) Performing minimization step: 1445. Total energy = 9328.6840 kcal/mol (9317.5049 without restraints) Performing minimization step: 1446. Total energy = 9324.4783 kcal/mol (9313.3020 without restraints) Performing minimization step: 1447. Total energy = 9320.2774 kcal/mol (9309.1040 without restraints) Performing minimization step: 1448. Total energy = 9316.0816 kcal/mol (9304.9107 without restraints) Performing minimization step: 1449. Total energy = 9311.8905 kcal/mol (9300.7224 without restraints) Performing minimization step: 1450. Total energy = 9307.7045 kcal/mol (9296.5391 without restraints) Performing minimization step: 1451. Total energy = 9303.5236 kcal/mol (9292.3609 without restraints) Performing minimization step: 1452. Total energy = 9299.3475 kcal/mol (9288.1876 without restraints) Performing minimization step: 1453. Total energy = 9295.1766 kcal/mol (9284.0194 without restraints) Performing minimization step: 1454. Total energy = 9291.0102 kcal/mol (9279.8557 without restraints) Performing minimization step: 1455. Total energy = 9286.8483 kcal/mol (9275.6966 without restraints) Performing minimization step: 1456. Total energy = 9282.6914 kcal/mol (9271.5424 without restraints) Performing minimization step: 1457. Total energy = 9278.5394 kcal/mol (9267.3931 without restraints) Performing minimization step: 1458. Total energy = 9274.3921 kcal/mol (9263.2486 without restraints) Performing minimization step: 1459. Total energy = 9270.2496 kcal/mol (9259.1089 without restraints) Performing minimization step: 1460. Total energy = 9266.1118 kcal/mol (9254.9738 without restraints) Performing minimization step: 1461. Total energy = 9261.9787 kcal/mol (9250.8434 without restraints) Performing minimization step: 1462. Total energy = 9257.8507 kcal/mol (9246.7181 without restraints) Performing minimization step: 1463. Total energy = 9253.7273 kcal/mol (9242.5975 without restraints) Performing minimization step: 1464. Total energy = 9249.6088 kcal/mol (9238.4817 without restraints) Performing minimization step: 1465. Total energy = 9245.4950 kcal/mol (9234.3706 without restraints) Performing minimization step: 1466. Total energy = 9241.3860 kcal/mol (9230.2643 without restraints) Performing minimization step: 1467. Total energy = 9237.2821 kcal/mol (9226.1632 without restraints) Performing minimization step: 1468. Total energy = 9233.1823 kcal/mol (9222.0660 without restraints) Performing minimization step: 1469. Total energy = 9229.0874 kcal/mol (9217.9740 without restraints) Performing minimization step: 1470. Total energy = 9224.9974 kcal/mol (9213.8867 without restraints) Performing minimization step: 1471. Total energy = 9220.9124 kcal/mol (9209.8044 without restraints) Performing minimization step: 1472. Total energy = 9216.8319 kcal/mol (9205.7267 without restraints) Performing minimization step: 1473. Total energy = 9212.7562 kcal/mol (9201.6536 without restraints) Performing minimization step: 1474. Total energy = 9208.6850 kcal/mol (9197.5853 without restraints) Performing minimization step: 1475. Total energy = 9204.6186 kcal/mol (9193.5214 without restraints) Performing minimization step: 1476. Total energy = 9200.5567 kcal/mol (9189.4623 without restraints) Performing minimization step: 1477. Total energy = 9196.4994 kcal/mol (9185.4076 without restraints) Performing minimization step: 1478. Total energy = 9192.4472 kcal/mol (9181.3582 without restraints) Performing minimization step: 1479. Total energy = 9188.3993 kcal/mol (9177.3131 without restraints) Performing minimization step: 1480. Total energy = 9184.3561 kcal/mol (9173.2726 without restraints) Performing minimization step: 1481. Total energy = 9180.3175 kcal/mol (9169.2367 without restraints) Performing minimization step: 1482. Total energy = 9176.2833 kcal/mol (9165.2052 without restraints) Performing minimization step: 1483. Total energy = 9172.2533 kcal/mol (9161.1779 without restraints) Performing minimization step: 1484. Total energy = 9168.2286 kcal/mol (9157.1560 without restraints) Performing minimization step: 1485. Total energy = 9164.2091 kcal/mol (9153.1393 without restraints) Performing minimization step: 1486. Total energy = 9160.1938 kcal/mol (9149.1267 without restraints) Performing minimization step: 1487. Total energy = 9156.1831 kcal/mol (9145.1187 without restraints) Performing minimization step: 1488. Total energy = 9152.1767 kcal/mol (9141.1149 without restraints) Performing minimization step: 1489. Total energy = 9148.1748 kcal/mol (9137.1157 without restraints) Performing minimization step: 1490. Total energy = 9144.1775 kcal/mol (9133.1211 without restraints) Performing minimization step: 1491. Total energy = 9140.1850 kcal/mol (9129.1314 without restraints) Performing minimization step: 1492. Total energy = 9136.1970 kcal/mol (9125.1459 without restraints) Performing minimization step: 1493. Total energy = 9132.2134 kcal/mol (9121.1651 without restraints) Performing minimization step: 1494. Total energy = 9128.2340 kcal/mol (9117.1883 without restraints) Performing minimization step: 1495. Total energy = 9124.2594 kcal/mol (9113.2165 without restraints) Performing minimization step: 1496. Total energy = 9120.2892 kcal/mol (9109.2491 without restraints) Performing minimization step: 1497. Total energy = 9116.3238 kcal/mol (9105.2863 without restraints) Performing minimization step: 1498. Total energy = 9112.3625 kcal/mol (9101.3279 without restraints) Performing minimization step: 1499. Total energy = 9108.4066 kcal/mol (9097.3746 without restraints) Performing minimization step: 1500. Total energy = 9104.4543 kcal/mol (9093.4249 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 9100.5067 kcal/mol (9089.4801 without restraints) Performing minimization step: 1502. Total energy = 9096.5639 kcal/mol (9085.5399 without restraints) Performing minimization step: 1503. Total energy = 9092.6255 kcal/mol (9081.6042 without restraints) Performing minimization step: 1504. Total energy = 9088.6913 kcal/mol (9077.6727 without restraints) Performing minimization step: 1505. Total energy = 9084.7617 kcal/mol (9073.7458 without restraints) Performing minimization step: 1506. Total energy = 9080.8365 kcal/mol (9069.8234 without restraints) Performing minimization step: 1507. Total energy = 9076.9162 kcal/mol (9065.9057 without restraints) Performing minimization step: 1508. Total energy = 9072.9998 kcal/mol (9061.9920 without restraints) Performing minimization step: 1509. Total energy = 9069.0879 kcal/mol (9058.0829 without restraints) Performing minimization step: 1510. Total energy = 9065.1805 kcal/mol (9054.1781 without restraints) Performing minimization step: 1511. Total energy = 9061.2778 kcal/mol (9050.2781 without restraints) Performing minimization step: 1512. Total energy = 9057.3792 kcal/mol (9046.3823 without restraints) Performing minimization step: 1513. Total energy = 9053.4850 kcal/mol (9042.4907 without restraints) Performing minimization step: 1514. Total energy = 9049.5953 kcal/mol (9038.6036 without restraints) Performing minimization step: 1515. Total energy = 9045.7097 kcal/mol (9034.7207 without restraints) Performing minimization step: 1516. Total energy = 9041.8285 kcal/mol (9030.8422 without restraints) Performing minimization step: 1517. Total energy = 9037.9517 kcal/mol (9026.9682 without restraints) Performing minimization step: 1518. Total energy = 9034.0795 kcal/mol (9023.0986 without restraints) Performing minimization step: 1519. Total energy = 9030.2115 kcal/mol (9019.2333 without restraints) Performing minimization step: 1520. Total energy = 9026.3476 kcal/mol (9015.3721 without restraints) Performing minimization step: 1521. Total energy = 9022.4883 kcal/mol (9011.5155 without restraints) Performing minimization step: 1522. Total energy = 9018.6328 kcal/mol (9007.6627 without restraints) Performing minimization step: 1523. Total energy = 9014.7821 kcal/mol (9003.8147 without restraints) Performing minimization step: 1524. Total energy = 9010.9356 kcal/mol (8999.9709 without restraints) Performing minimization step: 1525. Total energy = 9007.0935 kcal/mol (8996.1315 without restraints) Performing minimization step: 1526. Total energy = 9003.2556 kcal/mol (8992.2961 without restraints) Performing minimization step: 1527. Total energy = 8999.4220 kcal/mol (8988.4652 without restraints) Performing minimization step: 1528. Total energy = 8995.5923 kcal/mol (8984.6383 without restraints) Performing minimization step: 1529. Total energy = 8991.7673 kcal/mol (8980.8159 without restraints) Performing minimization step: 1530. Total energy = 8987.9463 kcal/mol (8976.9976 without restraints) Performing minimization step: 1531. Total energy = 8984.1296 kcal/mol (8973.1836 without restraints) Performing minimization step: 1532. Total energy = 8980.3175 kcal/mol (8969.3742 without restraints) Performing minimization step: 1533. Total energy = 8976.5095 kcal/mol (8965.5687 without restraints) Performing minimization step: 1534. Total energy = 8972.7057 kcal/mol (8961.7677 without restraints) Performing minimization step: 1535. Total energy = 8968.9061 kcal/mol (8957.9708 without restraints) Performing minimization step: 1536. Total energy = 8965.1106 kcal/mol (8954.1779 without restraints) Performing minimization step: 1537. Total energy = 8961.3194 kcal/mol (8950.3894 without restraints) Performing minimization step: 1538. Total energy = 8957.5326 kcal/mol (8946.6053 without restraints) Performing minimization step: 1539. Total energy = 8953.7498 kcal/mol (8942.8252 without restraints) Performing minimization step: 1540. Total energy = 8949.9712 kcal/mol (8939.0493 without restraints) Performing minimization step: 1541. Total energy = 8946.1963 kcal/mol (8935.2769 without restraints) Performing minimization step: 1542. Total energy = 8942.4259 kcal/mol (8931.5093 without restraints) Performing minimization step: 1543. Total energy = 8938.6598 kcal/mol (8927.7459 without restraints) Performing minimization step: 1544. Total energy = 8934.8979 kcal/mol (8923.9866 without restraints) Performing minimization step: 1545. Total energy = 8931.1401 kcal/mol (8920.2315 without restraints) Performing minimization step: 1546. Total energy = 8927.3867 kcal/mol (8916.4807 without restraints) Performing minimization step: 1547. Total energy = 8923.6372 kcal/mol (8912.7340 without restraints) Performing minimization step: 1548. Total energy = 8919.8918 kcal/mol (8908.9912 without restraints) Performing minimization step: 1549. Total energy = 8916.1504 kcal/mol (8905.2525 without restraints) Performing minimization step: 1550. Total energy = 8912.4131 kcal/mol (8901.5178 without restraints) Performing minimization step: 1551. Total energy = 8908.6799 kcal/mol (8897.7874 without restraints) Performing minimization step: 1552. Total energy = 8904.9512 kcal/mol (8894.0614 without restraints) Performing minimization step: 1553. Total energy = 8901.2265 kcal/mol (8890.3392 without restraints) Performing minimization step: 1554. Total energy = 8897.5052 kcal/mol (8886.6205 without restraints) Performing minimization step: 1555. Total energy = 8893.7885 kcal/mol (8882.9065 without restraints) Performing minimization step: 1556. Total energy = 8890.0757 kcal/mol (8879.1963 without restraints) Performing minimization step: 1557. Total energy = 8886.3670 kcal/mol (8875.4903 without restraints) Performing minimization step: 1558. Total energy = 8882.6622 kcal/mol (8871.7882 without restraints) Performing minimization step: 1559. Total energy = 8878.9623 kcal/mol (8868.0909 without restraints) Performing minimization step: 1560. Total energy = 8875.2656 kcal/mol (8864.3969 without restraints) Performing minimization step: 1561. Total energy = 8871.5731 kcal/mol (8860.7070 without restraints) Performing minimization step: 1562. Total energy = 8867.8848 kcal/mol (8857.0213 without restraints) Performing minimization step: 1563. Total energy = 8864.2003 kcal/mol (8853.3395 without restraints) Performing minimization step: 1564. Total energy = 8860.5197 kcal/mol (8849.6615 without restraints) Performing minimization step: 1565. Total energy = 8856.8432 kcal/mol (8845.9878 without restraints) Performing minimization step: 1566. Total energy = 8853.1710 kcal/mol (8842.3182 without restraints) Performing minimization step: 1567. Total energy = 8849.5027 kcal/mol (8838.6526 without restraints) Performing minimization step: 1568. Total energy = 8845.8392 kcal/mol (8834.9917 without restraints) Performing minimization step: 1569. Total energy = 8842.1786 kcal/mol (8831.3337 without restraints) Performing minimization step: 1570. Total energy = 8838.5219 kcal/mol (8827.6796 without restraints) Performing minimization step: 1571. Total energy = 8834.8693 kcal/mol (8824.0297 without restraints) Performing minimization step: 1572. Total energy = 8831.2207 kcal/mol (8820.3839 without restraints) Performing minimization step: 1573. Total energy = 8827.5758 kcal/mol (8816.7413 without restraints) Performing minimization step: 1574. Total energy = 8823.9347 kcal/mol (8813.1030 without restraints) Performing minimization step: 1575. Total energy = 8820.2979 kcal/mol (8809.4689 without restraints) Performing minimization step: 1576. Total energy = 8816.6652 kcal/mol (8805.8390 without restraints) Performing minimization step: 1577. Total energy = 8813.0365 kcal/mol (8802.2129 without restraints) Performing minimization step: 1578. Total energy = 8809.4113 kcal/mol (8798.5900 without restraints) Performing minimization step: 1579. Total energy = 8805.7901 kcal/mol (8794.9716 without restraints) Performing minimization step: 1580. Total energy = 8802.1723 kcal/mol (8791.3564 without restraints) Performing minimization step: 1581. Total energy = 8798.5592 kcal/mol (8787.7460 without restraints) Performing minimization step: 1582. Total energy = 8794.9497 kcal/mol (8784.1392 without restraints) Performing minimization step: 1583. Total energy = 8791.3444 kcal/mol (8780.5365 without restraints) Performing minimization step: 1584. Total energy = 8787.7423 kcal/mol (8776.9370 without restraints) Performing minimization step: 1585. Total energy = 8784.1444 kcal/mol (8773.3419 without restraints) Performing minimization step: 1586. Total energy = 8780.5507 kcal/mol (8769.7506 without restraints) Performing minimization step: 1587. Total energy = 8776.9607 kcal/mol (8766.1633 without restraints) Performing minimization step: 1588. Total energy = 8773.3742 kcal/mol (8762.5794 without restraints) Performing minimization step: 1589. Total energy = 8769.7913 kcal/mol (8758.9992 without restraints) Performing minimization step: 1590. Total energy = 8766.2127 kcal/mol (8755.4233 without restraints) Performing minimization step: 1591. Total energy = 8762.6375 kcal/mol (8751.8507 without restraints) Performing minimization step: 1592. Total energy = 8759.0663 kcal/mol (8748.2821 without restraints) Performing minimization step: 1593. Total energy = 8755.4989 kcal/mol (8744.7173 without restraints) Performing minimization step: 1594. Total energy = 8751.9350 kcal/mol (8741.1560 without restraints) Performing minimization step: 1595. Total energy = 8748.3751 kcal/mol (8737.5988 without restraints) Performing minimization step: 1596. Total energy = 8744.8190 kcal/mol (8734.0453 without restraints) Performing minimization step: 1597. Total energy = 8741.2666 kcal/mol (8730.4954 without restraints) Performing minimization step: 1598. Total energy = 8737.7179 kcal/mol (8726.9494 without restraints) Performing minimization step: 1599. Total energy = 8734.1730 kcal/mol (8723.4072 without restraints) Performing minimization step: 1600. Total energy = 8730.6321 kcal/mol (8719.8688 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 8727.0944 kcal/mol (8716.3338 without restraints) Performing minimization step: 1602. Total energy = 8723.5609 kcal/mol (8712.8028 without restraints) Performing minimization step: 1603. Total energy = 8720.0304 kcal/mol (8709.2751 without restraints) Performing minimization step: 1604. Total energy = 8716.5042 kcal/mol (8705.7515 without restraints) Performing minimization step: 1605. Total energy = 8712.9817 kcal/mol (8702.2315 without restraints) Performing minimization step: 1606. Total energy = 8709.4629 kcal/mol (8698.7154 without restraints) Performing minimization step: 1607. Total energy = 8705.9478 kcal/mol (8695.2029 without restraints) Performing minimization step: 1608. Total energy = 8702.4361 kcal/mol (8691.6939 without restraints) Performing minimization step: 1609. Total energy = 8698.9283 kcal/mol (8688.1885 without restraints) Performing minimization step: 1610. Total energy = 8695.4243 kcal/mol (8684.6874 without restraints) Performing minimization step: 1611. Total energy = 8691.9240 kcal/mol (8681.1896 without restraints) Performing minimization step: 1612. Total energy = 8688.4272 kcal/mol (8677.6954 without restraints) Performing minimization step: 1613. Total energy = 8684.9346 kcal/mol (8674.2055 without restraints) Performing minimization step: 1614. Total energy = 8681.4458 kcal/mol (8670.7191 without restraints) Performing minimization step: 1615. Total energy = 8677.9597 kcal/mol (8667.2357 without restraints) Performing minimization step: 1616. Total energy = 8674.4775 kcal/mol (8663.7562 without restraints) Performing minimization step: 1617. Total energy = 8670.9990 kcal/mol (8660.2802 without restraints) Performing minimization step: 1618. Total energy = 8667.5239 kcal/mol (8656.8078 without restraints) Performing minimization step: 1619. Total energy = 8664.0527 kcal/mol (8653.3392 without restraints) Performing minimization step: 1620. Total energy = 8660.5852 kcal/mol (8649.8742 without restraints) Performing minimization step: 1621. Total energy = 8657.1210 kcal/mol (8646.4126 without restraints) Performing minimization step: 1622. Total energy = 8653.6608 kcal/mol (8642.9550 without restraints) Performing minimization step: 1623. Total energy = 8650.2037 kcal/mol (8639.5005 without restraints) Performing minimization step: 1624. Total energy = 8646.7504 kcal/mol (8636.0498 without restraints) Performing minimization step: 1625. Total energy = 8643.3004 kcal/mol (8632.6025 without restraints) Performing minimization step: 1626. Total energy = 8639.8542 kcal/mol (8629.1589 without restraints) Performing minimization step: 1627. Total energy = 8636.4114 kcal/mol (8625.7186 without restraints) Performing minimization step: 1628. Total energy = 8632.9719 kcal/mol (8622.2818 without restraints) Performing minimization step: 1629. Total energy = 8629.5362 kcal/mol (8618.8486 without restraints) Performing minimization step: 1630. Total energy = 8626.1040 kcal/mol (8615.4190 without restraints) Performing minimization step: 1631. Total energy = 8622.6753 kcal/mol (8611.9929 without restraints) Performing minimization step: 1632. Total energy = 8619.2494 kcal/mol (8608.5697 without restraints) Performing minimization step: 1633. Total energy = 8615.8278 kcal/mol (8605.1506 without restraints) Performing minimization step: 1634. Total energy = 8612.4097 kcal/mol (8601.7352 without restraints) Performing minimization step: 1635. Total energy = 8608.9955 kcal/mol (8598.3235 without restraints) Performing minimization step: 1636. Total energy = 8605.5843 kcal/mol (8594.9149 without restraints) Performing minimization step: 1637. Total energy = 8602.1770 kcal/mol (8591.5102 without restraints) Performing minimization step: 1638. Total energy = 8598.7729 kcal/mol (8588.1087 without restraints) Performing minimization step: 1639. Total energy = 8595.3724 kcal/mol (8584.7108 without restraints) Performing minimization step: 1640. Total energy = 8591.9751 kcal/mol (8581.3160 without restraints) Performing minimization step: 1641. Total energy = 8588.5811 kcal/mol (8577.9247 without restraints) Performing minimization step: 1642. Total energy = 8585.1906 kcal/mol (8574.5368 without restraints) Performing minimization step: 1643. Total energy = 8581.8036 kcal/mol (8571.1523 without restraints) Performing minimization step: 1644. Total energy = 8578.4202 kcal/mol (8567.7715 without restraints) Performing minimization step: 1645. Total energy = 8575.0399 kcal/mol (8564.3939 without restraints) Performing minimization step: 1646. Total energy = 8571.6632 kcal/mol (8561.0197 without restraints) Performing minimization step: 1647. Total energy = 8568.2892 kcal/mol (8557.6483 without restraints) Performing minimization step: 1648. Total energy = 8564.9188 kcal/mol (8554.2804 without restraints) Performing minimization step: 1649. Total energy = 8561.5522 kcal/mol (8550.9164 without restraints) Performing minimization step: 1650. Total energy = 8558.1889 kcal/mol (8547.5557 without restraints) Performing minimization step: 1651. Total energy = 8554.8293 kcal/mol (8544.1987 without restraints) Performing minimization step: 1652. Total energy = 8551.4726 kcal/mol (8540.8446 without restraints) Performing minimization step: 1653. Total energy = 8548.1193 kcal/mol (8537.4938 without restraints) Performing minimization step: 1654. Total energy = 8544.7696 kcal/mol (8534.1468 without restraints) Performing minimization step: 1655. Total energy = 8541.4234 kcal/mol (8530.8032 without restraints) Performing minimization step: 1656. Total energy = 8538.0807 kcal/mol (8527.4630 without restraints) Performing minimization step: 1657. Total energy = 8534.7411 kcal/mol (8524.1259 without restraints) Performing minimization step: 1658. Total energy = 8531.4054 kcal/mol (8520.7928 without restraints) Performing minimization step: 1659. Total energy = 8528.0723 kcal/mol (8517.4623 without restraints) Performing minimization step: 1660. Total energy = 8524.7425 kcal/mol (8514.1351 without restraints) Performing minimization step: 1661. Total energy = 8521.4163 kcal/mol (8510.8114 without restraints) Performing minimization step: 1662. Total energy = 8518.0925 kcal/mol (8507.4902 without restraints) Performing minimization step: 1663. Total energy = 8514.7726 kcal/mol (8504.1729 without restraints) Performing minimization step: 1664. Total energy = 8511.4560 kcal/mol (8500.8589 without restraints) Performing minimization step: 1665. Total energy = 8508.1436 kcal/mol (8497.5490 without restraints) Performing minimization step: 1666. Total energy = 8504.8336 kcal/mol (8494.2416 without restraints) Performing minimization step: 1667. Total energy = 8501.5268 kcal/mol (8490.9374 without restraints) Performing minimization step: 1668. Total energy = 8498.2233 kcal/mol (8487.6364 without restraints) Performing minimization step: 1669. Total energy = 8494.9231 kcal/mol (8484.3388 without restraints) Performing minimization step: 1670. Total energy = 8491.6263 kcal/mol (8481.0445 without restraints) Performing minimization step: 1671. Total energy = 8488.3326 kcal/mol (8477.7534 without restraints) Performing minimization step: 1672. Total energy = 8485.0422 kcal/mol (8474.4656 without restraints) Performing minimization step: 1673. Total energy = 8481.7547 kcal/mol (8471.1808 without restraints) Performing minimization step: 1674. Total energy = 8478.4705 kcal/mol (8467.8990 without restraints) Performing minimization step: 1675. Total energy = 8475.1898 kcal/mol (8464.6208 without restraints) Performing minimization step: 1676. Total energy = 8471.9118 kcal/mol (8461.3454 without restraints) Performing minimization step: 1677. Total energy = 8468.6378 kcal/mol (8458.0739 without restraints) Performing minimization step: 1678. Total energy = 8465.3667 kcal/mol (8454.8055 without restraints) Performing minimization step: 1679. Total energy = 8462.0983 kcal/mol (8451.5394 without restraints) Performing minimization step: 1680. Total energy = 8458.8332 kcal/mol (8448.2771 without restraints) Performing minimization step: 1681. Total energy = 8455.5710 kcal/mol (8445.0174 without restraints) Performing minimization step: 1682. Total energy = 8452.3127 kcal/mol (8441.7617 without restraints) Performing minimization step: 1683. Total energy = 8449.0574 kcal/mol (8438.5090 without restraints) Performing minimization step: 1684. Total energy = 8445.8054 kcal/mol (8435.2594 without restraints) Performing minimization step: 1685. Total energy = 8442.5564 kcal/mol (8432.0130 without restraints) Performing minimization step: 1686. Total energy = 8439.3103 kcal/mol (8428.7695 without restraints) Performing minimization step: 1687. Total energy = 8436.0673 kcal/mol (8425.5292 without restraints) Performing minimization step: 1688. Total energy = 8432.8276 kcal/mol (8422.2919 without restraints) Performing minimization step: 1689. Total energy = 8429.5910 kcal/mol (8419.0578 without restraints) Performing minimization step: 1690. Total energy = 8426.3576 kcal/mol (8415.8269 without restraints) Performing minimization step: 1691. Total energy = 8423.1271 kcal/mol (8412.5990 without restraints) Performing minimization step: 1692. Total energy = 8419.9001 kcal/mol (8409.3747 without restraints) Performing minimization step: 1693. Total energy = 8416.6764 kcal/mol (8406.1534 without restraints) Performing minimization step: 1694. Total energy = 8413.4553 kcal/mol (8402.9349 without restraints) Performing minimization step: 1695. Total energy = 8410.2375 kcal/mol (8399.7195 without restraints) Performing minimization step: 1696. Total energy = 8407.0224 kcal/mol (8396.5070 without restraints) Performing minimization step: 1697. Total energy = 8403.8106 kcal/mol (8393.2978 without restraints) Performing minimization step: 1698. Total energy = 8400.6018 kcal/mol (8390.0915 without restraints) Performing minimization step: 1699. Total energy = 8397.3958 kcal/mol (8386.8881 without restraints) Performing minimization step: 1700. Total energy = 8394.1929 kcal/mol (8383.6877 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 8390.9930 kcal/mol (8380.4903 without restraints) Performing minimization step: 1702. Total energy = 8387.7963 kcal/mol (8377.2962 without restraints) Performing minimization step: 1703. Total energy = 8384.6023 kcal/mol (8374.1047 without restraints) Performing minimization step: 1704. Total energy = 8381.4123 kcal/mol (8370.9171 without restraints) Performing minimization step: 1705. Total energy = 8378.2244 kcal/mol (8367.7318 without restraints) Performing minimization step: 1706. Total energy = 8375.0396 kcal/mol (8364.5495 without restraints) Performing minimization step: 1707. Total energy = 8371.8581 kcal/mol (8361.3706 without restraints) Performing minimization step: 1708. Total energy = 8368.6793 kcal/mol (8358.1943 without restraints) Performing minimization step: 1709. Total energy = 8365.5037 kcal/mol (8355.0214 without restraints) Performing minimization step: 1710. Total energy = 8362.3309 kcal/mol (8351.8510 without restraints) Performing minimization step: 1711. Total energy = 8359.1606 kcal/mol (8348.6832 without restraints) Performing minimization step: 1712. Total energy = 8355.9936 kcal/mol (8345.5188 without restraints) Performing minimization step: 1713. Total energy = 8352.8300 kcal/mol (8342.3576 without restraints) Performing minimization step: 1714. Total energy = 8349.6689 kcal/mol (8339.1991 without restraints) Performing minimization step: 1715. Total energy = 8346.5110 kcal/mol (8336.0439 without restraints) Performing minimization step: 1716. Total energy = 8343.3559 kcal/mol (8332.8912 without restraints) Performing minimization step: 1717. Total energy = 8340.2033 kcal/mol (8329.7411 without restraints) Performing minimization step: 1718. Total energy = 8337.0540 kcal/mol (8326.5943 without restraints) Performing minimization step: 1719. Total energy = 8333.9079 kcal/mol (8323.4507 without restraints) Performing minimization step: 1720. Total energy = 8330.7644 kcal/mol (8320.3097 without restraints) Performing minimization step: 1721. Total energy = 8327.6247 kcal/mol (8317.1727 without restraints) Performing minimization step: 1722. Total energy = 8324.4870 kcal/mol (8314.0374 without restraints) Performing minimization step: 1723. Total energy = 8321.3521 kcal/mol (8310.9050 without restraints) Performing minimization step: 1724. Total energy = 8318.2200 kcal/mol (8307.7755 without restraints) Performing minimization step: 1725. Total energy = 8315.0908 kcal/mol (8304.6487 without restraints) Performing minimization step: 1726. Total energy = 8311.9645 kcal/mol (8301.5249 without restraints) Performing minimization step: 1727. Total energy = 8308.8411 kcal/mol (8298.4041 without restraints) Performing minimization step: 1728. Total energy = 8305.7208 kcal/mol (8295.2863 without restraints) Performing minimization step: 1729. Total energy = 8302.6034 kcal/mol (8292.1713 without restraints) Performing minimization step: 1730. Total energy = 8299.4885 kcal/mol (8289.0589 without restraints) Performing minimization step: 1731. Total energy = 8296.3764 kcal/mol (8285.9494 without restraints) Performing minimization step: 1732. Total energy = 8293.2671 kcal/mol (8282.8427 without restraints) Performing minimization step: 1733. Total energy = 8290.1607 kcal/mol (8279.7387 without restraints) Performing minimization step: 1734. Total energy = 8287.0572 kcal/mol (8276.6378 without restraints) Performing minimization step: 1735. Total energy = 8283.9567 kcal/mol (8273.5397 without restraints) Performing minimization step: 1736. Total energy = 8280.8586 kcal/mol (8270.4442 without restraints) Performing minimization step: 1737. Total energy = 8277.7636 kcal/mol (8267.3515 without restraints) Performing minimization step: 1738. Total energy = 8274.6710 kcal/mol (8264.2616 without restraints) Performing minimization step: 1739. Total energy = 8271.5821 kcal/mol (8261.1752 without restraints) Performing minimization step: 1740. Total energy = 8268.4951 kcal/mol (8258.0906 without restraints) Performing minimization step: 1741. Total energy = 8265.4110 kcal/mol (8255.0090 without restraints) Performing minimization step: 1742. Total energy = 8262.3296 kcal/mol (8251.9302 without restraints) Performing minimization step: 1743. Total energy = 8259.2506 kcal/mol (8248.8537 without restraints) Performing minimization step: 1744. Total energy = 8256.1748 kcal/mol (8245.7803 without restraints) Performing minimization step: 1745. Total energy = 8253.1019 kcal/mol (8242.7099 without restraints) Performing minimization step: 1746. Total energy = 8250.0319 kcal/mol (8239.6424 without restraints) Performing minimization step: 1747. Total energy = 8246.9649 kcal/mol (8236.5779 without restraints) Performing minimization step: 1748. Total energy = 8243.8997 kcal/mol (8233.5152 without restraints) Performing minimization step: 1749. Total energy = 8240.8374 kcal/mol (8230.4554 without restraints) Performing minimization step: 1750. Total energy = 8237.7778 kcal/mol (8227.3984 without restraints) Performing minimization step: 1751. Total energy = 8234.7210 kcal/mol (8224.3440 without restraints) Performing minimization step: 1752. Total energy = 8231.6666 kcal/mol (8221.2919 without restraints) Performing minimization step: 1753. Total energy = 8228.6154 kcal/mol (8218.2435 without restraints) Performing minimization step: 1754. Total energy = 8225.5664 kcal/mol (8215.1969 without restraints) Performing minimization step: 1755. Total energy = 8222.5204 kcal/mol (8212.1533 without restraints) Performing minimization step: 1756. Total energy = 8219.4769 kcal/mol (8209.1123 without restraints) Performing minimization step: 1757. Total energy = 8216.4355 kcal/mol (8206.0734 without restraints) Performing minimization step: 1758. Total energy = 8213.3973 kcal/mol (8203.0375 without restraints) Performing minimization step: 1759. Total energy = 8210.3616 kcal/mol (8200.0045 without restraints) Performing minimization step: 1760. Total energy = 8207.3289 kcal/mol (8196.9743 without restraints) Performing minimization step: 1761. Total energy = 8204.2987 kcal/mol (8193.9465 without restraints) Performing minimization step: 1762. Total energy = 8201.2712 kcal/mol (8190.9216 without restraints) Performing minimization step: 1763. Total energy = 8198.2463 kcal/mol (8187.8991 without restraints) Performing minimization step: 1764. Total energy = 8195.2234 kcal/mol (8184.8787 without restraints) Performing minimization step: 1765. Total energy = 8192.2036 kcal/mol (8181.8614 without restraints) Performing minimization step: 1766. Total energy = 8189.1865 kcal/mol (8178.8469 without restraints) Performing minimization step: 1767. Total energy = 8186.1720 kcal/mol (8175.8347 without restraints) Performing minimization step: 1768. Total energy = 8183.1597 kcal/mol (8172.8250 without restraints) Performing minimization step: 1769. Total energy = 8180.1503 kcal/mol (8169.8180 without restraints) Performing minimization step: 1770. Total energy = 8177.1435 kcal/mol (8166.8137 without restraints) Performing minimization step: 1771. Total energy = 8174.1392 kcal/mol (8163.8119 without restraints) Performing minimization step: 1772. Total energy = 8171.1377 kcal/mol (8160.8128 without restraints) Performing minimization step: 1773. Total energy = 8168.1385 kcal/mol (8157.8161 without restraints) Performing minimization step: 1774. Total energy = 8165.1416 kcal/mol (8154.8217 without restraints) Performing minimization step: 1775. Total energy = 8162.1476 kcal/mol (8151.8301 without restraints) Performing minimization step: 1776. Total energy = 8159.1560 kcal/mol (8148.8410 without restraints) Performing minimization step: 1777. Total energy = 8156.1670 kcal/mol (8145.8545 without restraints) Performing minimization step: 1778. Total energy = 8153.1804 kcal/mol (8142.8702 without restraints) Performing minimization step: 1779. Total energy = 8150.1961 kcal/mol (8139.8887 without restraints) Performing minimization step: 1780. Total energy = 8147.2149 kcal/mol (8136.9098 without restraints) Performing minimization step: 1781. Total energy = 8144.2357 kcal/mol (8133.9330 without restraints) Performing minimization step: 1782. Total energy = 8141.2591 kcal/mol (8130.9589 without restraints) Performing minimization step: 1783. Total energy = 8138.2847 kcal/mol (8127.9868 without restraints) Performing minimization step: 1784. Total energy = 8135.3131 kcal/mol (8125.0178 without restraints) Performing minimization step: 1785. Total energy = 8132.3442 kcal/mol (8122.0515 without restraints) Performing minimization step: 1786. Total energy = 8129.3778 kcal/mol (8119.0874 without restraints) Performing minimization step: 1787. Total energy = 8126.4139 kcal/mol (8116.1260 without restraints) Performing minimization step: 1788. Total energy = 8123.4522 kcal/mol (8113.1667 without restraints) Performing minimization step: 1789. Total energy = 8120.4932 kcal/mol (8110.2103 without restraints) Performing minimization step: 1790. Total energy = 8117.5366 kcal/mol (8107.2560 without restraints) Performing minimization step: 1791. Total energy = 8114.5821 kcal/mol (8104.3040 without restraints) Performing minimization step: 1792. Total energy = 8111.6304 kcal/mol (8101.3547 without restraints) Performing minimization step: 1793. Total energy = 8108.6814 kcal/mol (8098.4081 without restraints) Performing minimization step: 1794. Total energy = 8105.7344 kcal/mol (8095.4635 without restraints) Performing minimization step: 1795. Total energy = 8102.7901 kcal/mol (8092.5218 without restraints) Performing minimization step: 1796. Total energy = 8099.8482 kcal/mol (8089.5823 without restraints) Performing minimization step: 1797. Total energy = 8096.9088 kcal/mol (8086.6454 without restraints) Performing minimization step: 1798. Total energy = 8093.9713 kcal/mol (8083.7103 without restraints) Performing minimization step: 1799. Total energy = 8091.0361 kcal/mol (8080.7776 without restraints) Performing minimization step: 1800. Total energy = 8088.1038 kcal/mol (8077.8476 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 8085.1737 kcal/mol (8074.9201 without restraints) Performing minimization step: 1802. Total energy = 8082.2460 kcal/mol (8071.9948 without restraints) Performing minimization step: 1803. Total energy = 8079.3209 kcal/mol (8069.0724 without restraints) Performing minimization step: 1804. Total energy = 8076.3981 kcal/mol (8066.1517 without restraints) Performing minimization step: 1805. Total energy = 8073.4773 kcal/mol (8063.2334 without restraints) Performing minimization step: 1806. Total energy = 8070.5592 kcal/mol (8060.3177 without restraints) Performing minimization step: 1807. Total energy = 8067.6424 kcal/mol (8057.4034 without restraints) Performing minimization step: 1808. Total energy = 8064.7285 kcal/mol (8054.4919 without restraints) Performing minimization step: 1809. Total energy = 8061.8172 kcal/mol (8051.5831 without restraints) Performing minimization step: 1810. Total energy = 8058.9084 kcal/mol (8048.6767 without restraints) Performing minimization step: 1811. Total energy = 8056.0017 kcal/mol (8045.7724 without restraints) Performing minimization step: 1812. Total energy = 8053.0973 kcal/mol (8042.8704 without restraints) Performing minimization step: 1813. Total energy = 8050.1951 kcal/mol (8039.9707 without restraints) Performing minimization step: 1814. Total energy = 8047.2953 kcal/mol (8037.0733 without restraints) Performing minimization step: 1815. Total energy = 8044.3980 kcal/mol (8034.1786 without restraints) Performing minimization step: 1816. Total energy = 8041.5026 kcal/mol (8031.2854 without restraints) Performing minimization step: 1817. Total energy = 8038.6098 kcal/mol (8028.3951 without restraints) Performing minimization step: 1818. Total energy = 8035.7192 kcal/mol (8025.5069 without restraints) Performing minimization step: 1819. Total energy = 8032.8311 kcal/mol (8022.6211 without restraints) Performing minimization step: 1820. Total energy = 8029.9448 kcal/mol (8019.7374 without restraints) Performing minimization step: 1821. Total energy = 8027.0609 kcal/mol (8016.8559 without restraints) Performing minimization step: 1822. Total energy = 8024.1791 kcal/mol (8013.9764 without restraints) Performing minimization step: 1823. Total energy = 8021.2994 kcal/mol (8011.0992 without restraints) Performing minimization step: 1824. Total energy = 8018.4221 kcal/mol (8008.2244 without restraints) Performing minimization step: 1825. Total energy = 8015.5472 kcal/mol (8005.3519 without restraints) Performing minimization step: 1826. Total energy = 8012.6749 kcal/mol (8002.4820 without restraints) Performing minimization step: 1827. Total energy = 8009.8044 kcal/mol (7999.6139 without restraints) Performing minimization step: 1828. Total energy = 8006.9363 kcal/mol (7996.7484 without restraints) Performing minimization step: 1829. Total energy = 8004.0708 kcal/mol (7993.8851 without restraints) Performing minimization step: 1830. Total energy = 8001.2069 kcal/mol (7991.0236 without restraints) Performing minimization step: 1831. Total energy = 7998.3448 kcal/mol (7988.1640 without restraints) Performing minimization step: 1832. Total energy = 7995.4854 kcal/mol (7985.3070 without restraints) Performing minimization step: 1833. Total energy = 7992.6282 kcal/mol (7982.4522 without restraints) Performing minimization step: 1834. Total energy = 7989.7732 kcal/mol (7979.5995 without restraints) Performing minimization step: 1835. Total energy = 7986.9202 kcal/mol (7976.7490 without restraints) Performing minimization step: 1836. Total energy = 7984.0701 kcal/mol (7973.9013 without restraints) Performing minimization step: 1837. Total energy = 7981.2216 kcal/mol (7971.0553 without restraints) Performing minimization step: 1838. Total energy = 7978.3752 kcal/mol (7968.2112 without restraints) Performing minimization step: 1839. Total energy = 7975.5307 kcal/mol (7965.3690 without restraints) Performing minimization step: 1840. Total energy = 7972.6886 kcal/mol (7962.5294 without restraints) Performing minimization step: 1841. Total energy = 7969.8484 kcal/mol (7959.6915 without restraints) Performing minimization step: 1842. Total energy = 7967.0103 kcal/mol (7956.8559 without restraints) Performing minimization step: 1843. Total energy = 7964.1744 kcal/mol (7954.0222 without restraints) Performing minimization step: 1844. Total energy = 7961.3405 kcal/mol (7951.1909 without restraints) Performing minimization step: 1845. Total energy = 7958.5086 kcal/mol (7948.3614 without restraints) Performing minimization step: 1846. Total energy = 7955.6793 kcal/mol (7945.5345 without restraints) Performing minimization step: 1847. Total energy = 7952.8514 kcal/mol (7942.7087 without restraints) Performing minimization step: 1848. Total energy = 7950.0260 kcal/mol (7939.8860 without restraints) Performing minimization step: 1849. Total energy = 7947.2029 kcal/mol (7937.0652 without restraints) Performing minimization step: 1850. Total energy = 7944.3815 kcal/mol (7934.2463 without restraints) Performing minimization step: 1851. Total energy = 7941.5626 kcal/mol (7931.4298 without restraints) Performing minimization step: 1852. Total energy = 7938.7455 kcal/mol (7928.6151 without restraints) Performing minimization step: 1853. Total energy = 7935.9308 kcal/mol (7925.8030 without restraints) Performing minimization step: 1854. Total energy = 7933.1186 kcal/mol (7922.9930 without restraints) Performing minimization step: 1855. Total energy = 7930.3078 kcal/mol (7920.1845 without restraints) Performing minimization step: 1856. Total energy = 7927.4988 kcal/mol (7917.3779 without restraints) Performing minimization step: 1857. Total energy = 7924.6918 kcal/mol (7914.5733 without restraints) Performing minimization step: 1858. Total energy = 7921.8873 kcal/mol (7911.7713 without restraints) Performing minimization step: 1859. Total energy = 7919.0853 kcal/mol (7908.9715 without restraints) Performing minimization step: 1860. Total energy = 7916.2848 kcal/mol (7906.1732 without restraints) Performing minimization step: 1861. Total energy = 7913.4863 kcal/mol (7903.3772 without restraints) Performing minimization step: 1862. Total energy = 7910.6896 kcal/mol (7900.5829 without restraints) Performing minimization step: 1863. Total energy = 7907.8948 kcal/mol (7897.7906 without restraints) Performing minimization step: 1864. Total energy = 7905.1023 kcal/mol (7895.0004 without restraints) Performing minimization step: 1865. Total energy = 7902.3114 kcal/mol (7892.2118 without restraints) Performing minimization step: 1866. Total energy = 7899.5230 kcal/mol (7889.4261 without restraints) Performing minimization step: 1867. Total energy = 7896.7368 kcal/mol (7886.6420 without restraints) Performing minimization step: 1868. Total energy = 7893.9521 kcal/mol (7883.8597 without restraints) Performing minimization step: 1869. Total energy = 7891.1693 kcal/mol (7881.0793 without restraints) Performing minimization step: 1870. Total energy = 7888.3887 kcal/mol (7878.3012 without restraints) Performing minimization step: 1871. Total energy = 7885.6102 kcal/mol (7875.5250 without restraints) Performing minimization step: 1872. Total energy = 7882.8333 kcal/mol (7872.7504 without restraints) Performing minimization step: 1873. Total energy = 7880.0585 kcal/mol (7869.9780 without restraints) Performing minimization step: 1874. Total energy = 7877.2857 kcal/mol (7867.2075 without restraints) Performing minimization step: 1875. Total energy = 7874.5150 kcal/mol (7864.4393 without restraints) Performing minimization step: 1876. Total energy = 7871.7464 kcal/mol (7861.6729 without restraints) Performing minimization step: 1877. Total energy = 7868.9793 kcal/mol (7858.9082 without restraints) Performing minimization step: 1878. Total energy = 7866.2142 kcal/mol (7856.1454 without restraints) Performing minimization step: 1879. Total energy = 7863.4505 kcal/mol (7853.3841 without restraints) Performing minimization step: 1880. Total energy = 7860.6892 kcal/mol (7850.6252 without restraints) Performing minimization step: 1881. Total energy = 7857.9300 kcal/mol (7847.8683 without restraints) Performing minimization step: 1882. Total energy = 7855.1724 kcal/mol (7845.1131 without restraints) Performing minimization step: 1883. Total energy = 7852.4168 kcal/mol (7842.3599 without restraints) Performing minimization step: 1884. Total energy = 7849.6631 kcal/mol (7839.6085 without restraints) Performing minimization step: 1885. Total energy = 7846.9113 kcal/mol (7836.8591 without restraints) Performing minimization step: 1886. Total energy = 7844.1611 kcal/mol (7834.1112 without restraints) Performing minimization step: 1887. Total energy = 7841.4130 kcal/mol (7831.3655 without restraints) Performing minimization step: 1888. Total energy = 7838.6667 kcal/mol (7828.6214 without restraints) Performing minimization step: 1889. Total energy = 7835.9224 kcal/mol (7825.8796 without restraints) Performing minimization step: 1890. Total energy = 7833.1795 kcal/mol (7823.1390 without restraints) Performing minimization step: 1891. Total energy = 7830.4387 kcal/mol (7820.4004 without restraints) Performing minimization step: 1892. Total energy = 7827.6996 kcal/mol (7817.6638 without restraints) Performing minimization step: 1893. Total energy = 7824.9624 kcal/mol (7814.9290 without restraints) Performing minimization step: 1894. Total energy = 7822.2273 kcal/mol (7812.1962 without restraints) Performing minimization step: 1895. Total energy = 7819.4945 kcal/mol (7809.4657 without restraints) Performing minimization step: 1896. Total energy = 7816.7630 kcal/mol (7806.7366 without restraints) Performing minimization step: 1897. Total energy = 7814.0334 kcal/mol (7804.0092 without restraints) Performing minimization step: 1898. Total energy = 7811.3052 kcal/mol (7801.2834 without restraints) Performing minimization step: 1899. Total energy = 7808.5792 kcal/mol (7798.5597 without restraints) Performing minimization step: 1900. Total energy = 7805.8549 kcal/mol (7795.8378 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 7803.1326 kcal/mol (7793.1179 without restraints) Performing minimization step: 1902. Total energy = 7800.4123 kcal/mol (7790.3998 without restraints) Performing minimization step: 1903. Total energy = 7797.6934 kcal/mol (7787.6833 without restraints) Performing minimization step: 1904. Total energy = 7794.9763 kcal/mol (7784.9685 without restraints) Performing minimization step: 1905. Total energy = 7792.2611 kcal/mol (7782.2557 without restraints) Performing minimization step: 1906. Total energy = 7789.5474 kcal/mol (7779.5443 without restraints) Performing minimization step: 1907. Total energy = 7786.8356 kcal/mol (7776.8347 without restraints) Performing minimization step: 1908. Total energy = 7784.1257 kcal/mol (7774.1273 without restraints) Performing minimization step: 1909. Total energy = 7781.4177 kcal/mol (7771.4215 without restraints) Performing minimization step: 1910. Total energy = 7778.7106 kcal/mol (7768.7168 without restraints) Performing minimization step: 1911. Total energy = 7776.0066 kcal/mol (7766.0151 without restraints) Performing minimization step: 1912. Total energy = 7773.3037 kcal/mol (7763.3147 without restraints) Performing minimization step: 1913. Total energy = 7770.6023 kcal/mol (7760.6154 without restraints) Performing minimization step: 1914. Total energy = 7767.9024 kcal/mol (7757.9180 without restraints) Performing minimization step: 1915. Total energy = 7765.2046 kcal/mol (7755.2224 without restraints) Performing minimization step: 1916. Total energy = 7762.5082 kcal/mol (7752.5283 without restraints) Performing minimization step: 1917. Total energy = 7759.8139 kcal/mol (7749.8364 without restraints) Performing minimization step: 1918. Total energy = 7757.1211 kcal/mol (7747.1458 without restraints) Performing minimization step: 1919. Total energy = 7754.4297 kcal/mol (7744.4568 without restraints) Performing minimization step: 1920. Total energy = 7751.7407 kcal/mol (7741.7701 without restraints) Performing minimization step: 1921. Total energy = 7749.0529 kcal/mol (7739.0845 without restraints) Performing minimization step: 1922. Total energy = 7746.3674 kcal/mol (7736.4014 without restraints) Performing minimization step: 1923. Total energy = 7743.6829 kcal/mol (7733.7192 without restraints) Performing minimization step: 1924. Total energy = 7741.0004 kcal/mol (7731.0390 without restraints) Performing minimization step: 1925. Total energy = 7738.3194 kcal/mol (7728.3603 without restraints) Performing minimization step: 1926. Total energy = 7735.6401 kcal/mol (7725.6831 without restraints) Performing minimization step: 1927. Total energy = 7732.9625 kcal/mol (7723.0081 without restraints) Performing minimization step: 1928. Total energy = 7730.2868 kcal/mol (7720.3346 without restraints) Performing minimization step: 1929. Total energy = 7727.6121 kcal/mol (7717.6622 without restraints) Performing minimization step: 1930. Total energy = 7724.9395 kcal/mol (7714.9918 without restraints) Performing minimization step: 1931. Total energy = 7722.2682 kcal/mol (7712.3230 without restraints) Performing minimization step: 1932. Total energy = 7719.5991 kcal/mol (7709.6561 without restraints) Performing minimization step: 1933. Total energy = 7716.9317 kcal/mol (7706.9910 without restraints) Performing minimization step: 1934. Total energy = 7714.2657 kcal/mol (7704.3274 without restraints) Performing minimization step: 1935. Total energy = 7711.6014 kcal/mol (7701.6653 without restraints) Performing minimization step: 1936. Total energy = 7708.9387 kcal/mol (7699.0049 without restraints) Performing minimization step: 1937. Total energy = 7706.2775 kcal/mol (7696.3459 without restraints) Performing minimization step: 1938. Total energy = 7703.6179 kcal/mol (7693.6888 without restraints) Performing minimization step: 1939. Total energy = 7700.9602 kcal/mol (7691.0332 without restraints) Performing minimization step: 1940. Total energy = 7698.3040 kcal/mol (7688.3794 without restraints) Performing minimization step: 1941. Total energy = 7695.6494 kcal/mol (7685.7271 without restraints) Performing minimization step: 1942. Total energy = 7692.9965 kcal/mol (7683.0764 without restraints) Performing minimization step: 1943. Total energy = 7690.3450 kcal/mol (7680.4272 without restraints) Performing minimization step: 1944. Total energy = 7687.6945 kcal/mol (7677.7790 without restraints) Performing minimization step: 1945. Total energy = 7685.0464 kcal/mol (7675.1332 without restraints) Performing minimization step: 1946. Total energy = 7682.3995 kcal/mol (7672.4887 without restraints) Performing minimization step: 1947. Total energy = 7679.7551 kcal/mol (7669.8464 without restraints) Performing minimization step: 1948. Total energy = 7677.1114 kcal/mol (7667.2050 without restraints) Performing minimization step: 1949. Total energy = 7674.4691 kcal/mol (7664.5649 without restraints) Performing minimization step: 1950. Total energy = 7671.8284 kcal/mol (7661.9266 without restraints) Performing minimization step: 1951. Total energy = 7669.1891 kcal/mol (7659.2896 without restraints) Performing minimization step: 1952. Total energy = 7666.5514 kcal/mol (7656.6542 without restraints) Performing minimization step: 1953. Total energy = 7663.9159 kcal/mol (7654.0209 without restraints) Performing minimization step: 1954. Total energy = 7661.2816 kcal/mol (7651.3889 without restraints) Performing minimization step: 1955. Total energy = 7658.6489 kcal/mol (7648.7584 without restraints) Performing minimization step: 1956. Total energy = 7656.0176 kcal/mol (7646.1295 without restraints) Performing minimization step: 1957. Total energy = 7653.3874 kcal/mol (7643.5015 without restraints) Performing minimization step: 1958. Total energy = 7650.7590 kcal/mol (7640.8753 without restraints) Performing minimization step: 1959. Total energy = 7648.1321 kcal/mol (7638.2507 without restraints) Performing minimization step: 1960. Total energy = 7645.5068 kcal/mol (7635.6276 without restraints) Performing minimization step: 1961. Total energy = 7642.8829 kcal/mol (7633.0061 without restraints) Performing minimization step: 1962. Total energy = 7640.2607 kcal/mol (7630.3862 without restraints) Performing minimization step: 1963. Total energy = 7637.6401 kcal/mol (7627.7678 without restraints) Performing minimization step: 1964. Total energy = 7635.0207 kcal/mol (7625.1506 without restraints) Performing minimization step: 1965. Total energy = 7632.4028 kcal/mol (7622.5350 without restraints) Performing minimization step: 1966. Total energy = 7629.7868 kcal/mol (7619.9212 without restraints) Performing minimization step: 1967. Total energy = 7627.1720 kcal/mol (7617.3087 without restraints) Performing minimization step: 1968. Total energy = 7624.5585 kcal/mol (7614.6974 without restraints) Performing minimization step: 1969. Total energy = 7621.9467 kcal/mol (7612.0879 without restraints) Performing minimization step: 1970. Total energy = 7619.3359 kcal/mol (7609.4794 without restraints) Performing minimization step: 1971. Total energy = 7616.7269 kcal/mol (7606.8726 without restraints) Performing minimization step: 1972. Total energy = 7614.1193 kcal/mol (7604.2672 without restraints) Performing minimization step: 1973. Total energy = 7611.5133 kcal/mol (7601.6635 without restraints) Performing minimization step: 1974. Total energy = 7608.9089 kcal/mol (7599.0614 without restraints) Performing minimization step: 1975. Total energy = 7606.3056 kcal/mol (7596.4603 without restraints) Performing minimization step: 1976. Total energy = 7603.7039 kcal/mol (7593.8609 without restraints) Performing minimization step: 1977. Total energy = 7601.1036 kcal/mol (7591.2629 without restraints) Performing minimization step: 1978. Total energy = 7598.5050 kcal/mol (7588.6664 without restraints) Performing minimization step: 1979. Total energy = 7595.9074 kcal/mol (7586.0711 without restraints) Performing minimization step: 1980. Total energy = 7593.3113 kcal/mol (7583.4774 without restraints) Performing minimization step: 1981. Total energy = 7590.7167 kcal/mol (7580.8848 without restraints) Performing minimization step: 1982. Total energy = 7588.1232 kcal/mol (7578.2937 without restraints) Performing minimization step: 1983. Total energy = 7585.5312 kcal/mol (7575.7038 without restraints) Performing minimization step: 1984. Total energy = 7582.9406 kcal/mol (7573.1155 without restraints) Performing minimization step: 1985. Total energy = 7580.3515 kcal/mol (7570.5286 without restraints) Performing minimization step: 1986. Total energy = 7577.7637 kcal/mol (7567.9430 without restraints) Performing minimization step: 1987. Total energy = 7575.1774 kcal/mol (7565.3589 without restraints) Performing minimization step: 1988. Total energy = 7572.5921 kcal/mol (7562.7759 without restraints) Performing minimization step: 1989. Total energy = 7570.0089 kcal/mol (7560.1952 without restraints) Performing minimization step: 1990. Total energy = 7567.4271 kcal/mol (7557.6154 without restraints) Performing minimization step: 1991. Total energy = 7564.8462 kcal/mol (7555.0367 without restraints) Performing minimization step: 1992. Total energy = 7562.2667 kcal/mol (7552.4594 without restraints) Performing minimization step: 1993. Total energy = 7559.6886 kcal/mol (7549.8835 without restraints) Performing minimization step: 1994. Total energy = 7557.1116 kcal/mol (7547.3088 without restraints) Performing minimization step: 1995. Total energy = 7554.5362 kcal/mol (7544.7356 without restraints) Performing minimization step: 1996. Total energy = 7551.9625 kcal/mol (7542.1641 without restraints) Performing minimization step: 1997. Total energy = 7549.3902 kcal/mol (7539.5940 without restraints) Performing minimization step: 1998. Total energy = 7546.8188 kcal/mol (7537.0250 without restraints) Performing minimization step: 1999. Total energy = 7544.2486 kcal/mol (7534.4569 without restraints) Performing minimization step: 2000. Total energy = 7541.6797 kcal/mol (7531.8902 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 7539.1123 kcal/mol (7529.3250 without restraints) Performing minimization step: 2002. Total energy = 7536.5460 kcal/mol (7526.7609 without restraints) Performing minimization step: 2003. Total energy = 7533.9813 kcal/mol (7524.1984 without restraints) Performing minimization step: 2004. Total energy = 7531.4182 kcal/mol (7521.6375 without restraints) Performing minimization step: 2005. Total energy = 7528.8561 kcal/mol (7519.0776 without restraints) Performing minimization step: 2006. Total energy = 7526.2953 kcal/mol (7516.5191 without restraints) Performing minimization step: 2007. Total energy = 7523.7360 kcal/mol (7513.9620 without restraints) Performing minimization step: 2008. Total energy = 7521.1778 kcal/mol (7511.4059 without restraints) Performing minimization step: 2009. Total energy = 7518.6209 kcal/mol (7508.8513 without restraints) Performing minimization step: 2010. Total energy = 7516.0653 kcal/mol (7506.2979 without restraints) Performing minimization step: 2011. Total energy = 7513.5110 kcal/mol (7503.7458 without restraints) Performing minimization step: 2012. Total energy = 7510.9582 kcal/mol (7501.1952 without restraints) Performing minimization step: 2013. Total energy = 7508.4069 kcal/mol (7498.6462 without restraints) Performing minimization step: 2014. Total energy = 7505.8565 kcal/mol (7496.0979 without restraints) Performing minimization step: 2015. Total energy = 7503.3072 kcal/mol (7493.5507 without restraints) Performing minimization step: 2016. Total energy = 7500.7592 kcal/mol (7491.0050 without restraints) Performing minimization step: 2017. Total energy = 7498.2125 kcal/mol (7488.4605 without restraints) Performing minimization step: 2018. Total energy = 7495.6671 kcal/mol (7485.9173 without restraints) Performing minimization step: 2019. Total energy = 7493.1230 kcal/mol (7483.3755 without restraints) Performing minimization step: 2020. Total energy = 7490.5803 kcal/mol (7480.8349 without restraints) Performing minimization step: 2021. Total energy = 7488.0388 kcal/mol (7478.2956 without restraints) Performing minimization step: 2022. Total energy = 7485.4981 kcal/mol (7475.7571 without restraints) Performing minimization step: 2023. Total energy = 7482.9595 kcal/mol (7473.2206 without restraints) Performing minimization step: 2024. Total energy = 7480.4216 kcal/mol (7470.6849 without restraints) Performing minimization step: 2025. Total energy = 7477.8849 kcal/mol (7468.1504 without restraints) Performing minimization step: 2026. Total energy = 7475.3495 kcal/mol (7465.6172 without restraints) Performing minimization step: 2027. Total energy = 7472.8151 kcal/mol (7463.0850 without restraints) Performing minimization step: 2028. Total energy = 7470.2819 kcal/mol (7460.5540 without restraints) Performing minimization step: 2029. Total energy = 7467.7499 kcal/mol (7458.0242 without restraints) Performing minimization step: 2030. Total energy = 7465.2195 kcal/mol (7455.4959 without restraints) Performing minimization step: 2031. Total energy = 7462.6908 kcal/mol (7452.9694 without restraints) Performing minimization step: 2032. Total energy = 7460.1622 kcal/mol (7450.4431 without restraints) Performing minimization step: 2033. Total energy = 7457.6354 kcal/mol (7447.9183 without restraints) Performing minimization step: 2034. Total energy = 7455.1096 kcal/mol (7445.3948 without restraints) Performing minimization step: 2035. Total energy = 7452.5853 kcal/mol (7442.8726 without restraints) Performing minimization step: 2036. Total energy = 7450.0622 kcal/mol (7440.3517 without restraints) Performing minimization step: 2037. Total energy = 7447.5401 kcal/mol (7437.8317 without restraints) Performing minimization step: 2038. Total energy = 7445.0192 kcal/mol (7435.3130 without restraints) Performing minimization step: 2039. Total energy = 7442.4993 kcal/mol (7432.7954 without restraints) Performing minimization step: 2040. Total energy = 7439.9809 kcal/mol (7430.2790 without restraints) Performing minimization step: 2041. Total energy = 7437.4639 kcal/mol (7427.7643 without restraints) Performing minimization step: 2042. Total energy = 7434.9480 kcal/mol (7425.2505 without restraints) Performing minimization step: 2043. Total energy = 7432.4330 kcal/mol (7422.7377 without restraints) Performing minimization step: 2044. Total energy = 7429.9194 kcal/mol (7420.2262 without restraints) Performing minimization step: 2045. Total energy = 7427.4067 kcal/mol (7417.7157 without restraints) Performing minimization step: 2046. Total energy = 7424.8953 kcal/mol (7415.2063 without restraints) Performing minimization step: 2047. Total energy = 7422.3847 kcal/mol (7412.6979 without restraints) Performing minimization step: 2048. Total energy = 7419.8754 kcal/mol (7410.1909 without restraints) Performing minimization step: 2049. Total energy = 7417.3673 kcal/mol (7407.6848 without restraints) Performing minimization step: 2050. Total energy = 7414.8601 kcal/mol (7405.1799 without restraints) Performing minimization step: 2051. Total energy = 7412.3546 kcal/mol (7402.6765 without restraints) Performing minimization step: 2052. Total energy = 7409.8504 kcal/mol (7400.1745 without restraints) Performing minimization step: 2053. Total energy = 7407.3469 kcal/mol (7397.6730 without restraints) Performing minimization step: 2054. Total energy = 7404.8447 kcal/mol (7395.1731 without restraints) Performing minimization step: 2055. Total energy = 7402.3435 kcal/mol (7392.6740 without restraints) Performing minimization step: 2056. Total energy = 7399.8433 kcal/mol (7390.1759 without restraints) Performing minimization step: 2057. Total energy = 7397.3440 kcal/mol (7387.6788 without restraints) Performing minimization step: 2058. Total energy = 7394.8462 kcal/mol (7385.1832 without restraints) Performing minimization step: 2059. Total energy = 7392.3495 kcal/mol (7382.6886 without restraints) Performing minimization step: 2060. Total energy = 7389.8545 kcal/mol (7380.1959 without restraints) Performing minimization step: 2061. Total energy = 7387.3605 kcal/mol (7377.7039 without restraints) Performing minimization step: 2062. Total energy = 7384.8672 kcal/mol (7375.2127 without restraints) Performing minimization step: 2063. Total energy = 7382.3749 kcal/mol (7372.7225 without restraints) Performing minimization step: 2064. Total energy = 7379.8838 kcal/mol (7370.2336 without restraints) Performing minimization step: 2065. Total energy = 7377.3945 kcal/mol (7367.7466 without restraints) Performing minimization step: 2066. Total energy = 7374.9057 kcal/mol (7365.2598 without restraints) Performing minimization step: 2067. Total energy = 7372.4183 kcal/mol (7362.7745 without restraints) Performing minimization step: 2068. Total energy = 7369.9317 kcal/mol (7360.2901 without restraints) Performing minimization step: 2069. Total energy = 7367.4462 kcal/mol (7357.8067 without restraints) Performing minimization step: 2070. Total energy = 7364.9617 kcal/mol (7355.3244 without restraints) Performing minimization step: 2071. Total energy = 7362.4784 kcal/mol (7352.8431 without restraints) Performing minimization step: 2072. Total energy = 7359.9962 kcal/mol (7350.3631 without restraints) Performing minimization step: 2073. Total energy = 7357.5152 kcal/mol (7347.8842 without restraints) Performing minimization step: 2074. Total energy = 7355.0351 kcal/mol (7345.4062 without restraints) Performing minimization step: 2075. Total energy = 7352.5558 kcal/mol (7342.9291 without restraints) Performing minimization step: 2076. Total energy = 7350.0778 kcal/mol (7340.4532 without restraints) Performing minimization step: 2077. Total energy = 7347.6009 kcal/mol (7337.9784 without restraints) Performing minimization step: 2078. Total energy = 7345.1252 kcal/mol (7335.5049 without restraints) Performing minimization step: 2079. Total energy = 7342.6504 kcal/mol (7333.0322 without restraints) Performing minimization step: 2080. Total energy = 7340.1765 kcal/mol (7330.5603 without restraints) Performing minimization step: 2081. Total energy = 7337.7038 kcal/mol (7328.0898 without restraints) Performing minimization step: 2082. Total energy = 7335.2321 kcal/mol (7325.6202 without restraints) Performing minimization step: 2083. Total energy = 7332.7613 kcal/mol (7323.1516 without restraints) Performing minimization step: 2084. Total energy = 7330.2927 kcal/mol (7320.6850 without restraints) Performing minimization step: 2085. Total energy = 7327.8242 kcal/mol (7318.2187 without restraints) Performing minimization step: 2086. Total energy = 7325.3568 kcal/mol (7315.7533 without restraints) Performing minimization step: 2087. Total energy = 7322.8904 kcal/mol (7313.2891 without restraints) Performing minimization step: 2088. Total energy = 7320.4251 kcal/mol (7310.8260 without restraints) Performing minimization step: 2089. Total energy = 7317.9613 kcal/mol (7308.3644 without restraints) Performing minimization step: 2090. Total energy = 7315.4982 kcal/mol (7305.9033 without restraints) Performing minimization step: 2091. Total energy = 7313.0361 kcal/mol (7303.4433 without restraints) Performing minimization step: 2092. Total energy = 7310.5749 kcal/mol (7300.9842 without restraints) Performing minimization step: 2093. Total energy = 7308.1149 kcal/mol (7298.5261 without restraints) Performing minimization step: 2094. Total energy = 7305.6556 kcal/mol (7296.0691 without restraints) Performing minimization step: 2095. Total energy = 7303.1980 kcal/mol (7293.6134 without restraints) Performing minimization step: 2096. Total energy = 7300.7405 kcal/mol (7291.1582 without restraints) Performing minimization step: 2097. Total energy = 7298.2844 kcal/mol (7288.7042 without restraints) Performing minimization step: 2098. Total energy = 7295.8295 kcal/mol (7286.2513 without restraints) Performing minimization step: 2099. Total energy = 7293.3752 kcal/mol (7283.7988 without restraints) Performing minimization step: 2100. Total energy = 7290.9218 kcal/mol (7281.3479 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 7288.4697 kcal/mol (7278.8978 without restraints) Performing minimization step: 2102. Total energy = 7286.0190 kcal/mol (7276.4493 without restraints) Performing minimization step: 2103. Total energy = 7283.5692 kcal/mol (7274.0016 without restraints) Performing minimization step: 2104. Total energy = 7281.1198 kcal/mol (7271.5542 without restraints) Performing minimization step: 2105. Total energy = 7278.6719 kcal/mol (7269.1086 without restraints) Performing minimization step: 2106. Total energy = 7276.2249 kcal/mol (7266.6636 without restraints) Performing minimization step: 2107. Total energy = 7273.7791 kcal/mol (7264.2199 without restraints) Performing minimization step: 2108. Total energy = 7271.3343 kcal/mol (7261.7772 without restraints) Performing minimization step: 2109. Total energy = 7268.8907 kcal/mol (7259.3356 without restraints) Performing minimization step: 2110. Total energy = 7266.4472 kcal/mol (7256.8942 without restraints) Performing minimization step: 2111. Total energy = 7264.0051 kcal/mol (7254.4542 without restraints) Performing minimization step: 2112. Total energy = 7261.5643 kcal/mol (7252.0154 without restraints) Performing minimization step: 2113. Total energy = 7259.1241 kcal/mol (7249.5775 without restraints) Performing minimization step: 2114. Total energy = 7256.6849 kcal/mol (7247.1402 without restraints) Performing minimization step: 2115. Total energy = 7254.2469 kcal/mol (7244.7042 without restraints) Performing minimization step: 2116. Total energy = 7251.8094 kcal/mol (7242.2689 without restraints) Performing minimization step: 2117. Total energy = 7249.3735 kcal/mol (7239.8350 without restraints) Performing minimization step: 2118. Total energy = 7246.9385 kcal/mol (7237.4021 without restraints) Performing minimization step: 2119. Total energy = 7244.5042 kcal/mol (7234.9699 without restraints) Performing minimization step: 2120. Total energy = 7242.0709 kcal/mol (7232.5386 without restraints) Performing minimization step: 2121. Total energy = 7239.6387 kcal/mol (7230.1085 without restraints) Performing minimization step: 2122. Total energy = 7237.2075 kcal/mol (7227.6794 without restraints) Performing minimization step: 2123. Total energy = 7234.7771 kcal/mol (7225.2511 without restraints) Performing minimization step: 2124. Total energy = 7232.3478 kcal/mol (7222.8239 without restraints) Performing minimization step: 2125. Total energy = 7229.9196 kcal/mol (7220.3978 without restraints) Performing minimization step: 2126. Total energy = 7227.4923 kcal/mol (7217.9725 without restraints) Performing minimization step: 2127. Total energy = 7225.0656 kcal/mol (7215.5479 without restraints) Performing minimization step: 2128. Total energy = 7222.6400 kcal/mol (7213.1244 without restraints) Performing minimization step: 2129. Total energy = 7220.2153 kcal/mol (7210.7017 without restraints) Performing minimization step: 2130. Total energy = 7217.7915 kcal/mol (7208.2799 without restraints) Performing minimization step: 2131. Total energy = 7215.3686 kcal/mol (7205.8591 without restraints) Performing minimization step: 2132. Total energy = 7212.9467 kcal/mol (7203.4393 without restraints) Performing minimization step: 2133. Total energy = 7210.5257 kcal/mol (7201.0203 without restraints) Performing minimization step: 2134. Total energy = 7208.1057 kcal/mol (7198.6024 without restraints) Performing minimization step: 2135. Total energy = 7205.6866 kcal/mol (7196.1854 without restraints) Performing minimization step: 2136. Total energy = 7203.2686 kcal/mol (7193.7694 without restraints) Performing minimization step: 2137. Total energy = 7200.8513 kcal/mol (7191.3542 without restraints) Performing minimization step: 2138. Total energy = 7198.4350 kcal/mol (7188.9399 without restraints) Performing minimization step: 2139. Total energy = 7196.0196 kcal/mol (7186.5267 without restraints) Performing minimization step: 2140. Total energy = 7193.6053 kcal/mol (7184.1143 without restraints) Performing minimization step: 2141. Total energy = 7191.1917 kcal/mol (7181.7027 without restraints) Performing minimization step: 2142. Total energy = 7188.7790 kcal/mol (7179.2921 without restraints) Performing minimization step: 2143. Total energy = 7186.3672 kcal/mol (7176.8823 without restraints) Performing minimization step: 2144. Total energy = 7183.9563 kcal/mol (7174.4734 without restraints) Performing minimization step: 2145. Total energy = 7181.5465 kcal/mol (7172.0657 without restraints) Performing minimization step: 2146. Total energy = 7179.1374 kcal/mol (7169.6586 without restraints) Performing minimization step: 2147. Total energy = 7176.7293 kcal/mol (7167.2526 without restraints) Performing minimization step: 2148. Total energy = 7174.3220 kcal/mol (7164.8474 without restraints) Performing minimization step: 2149. Total energy = 7171.9158 kcal/mol (7162.4432 without restraints) Performing minimization step: 2150. Total energy = 7169.5107 kcal/mol (7160.0402 without restraints) Performing minimization step: 2151. Total energy = 7167.1063 kcal/mol (7157.6378 without restraints) Performing minimization step: 2152. Total energy = 7164.7029 kcal/mol (7155.2367 without restraints) Performing minimization step: 2153. Total energy = 7162.3005 kcal/mol (7152.8361 without restraints) Performing minimization step: 2154. Total energy = 7159.8989 kcal/mol (7150.4366 without restraints) Performing minimization step: 2155. Total energy = 7157.4981 kcal/mol (7148.0378 without restraints) Performing minimization step: 2156. Total energy = 7155.0987 kcal/mol (7145.6407 without restraints) Performing minimization step: 2157. Total energy = 7152.6999 kcal/mol (7143.2438 without restraints) Performing minimization step: 2158. Total energy = 7150.3017 kcal/mol (7140.8474 without restraints) Performing minimization step: 2159. Total energy = 7147.9045 kcal/mol (7138.4523 without restraints) Performing minimization step: 2160. Total energy = 7145.5084 kcal/mol (7136.0582 without restraints) Performing minimization step: 2161. Total energy = 7143.1130 kcal/mol (7133.6649 without restraints) Performing minimization step: 2162. Total energy = 7140.7183 kcal/mol (7131.2722 without restraints) Performing minimization step: 2163. Total energy = 7138.3247 kcal/mol (7128.8805 without restraints) Performing minimization step: 2164. Total energy = 7135.9318 kcal/mol (7126.4897 without restraints) Performing minimization step: 2165. Total energy = 7133.5399 kcal/mol (7124.0998 without restraints) Performing minimization step: 2166. Total energy = 7131.1493 kcal/mol (7121.7113 without restraints) Performing minimization step: 2167. Total energy = 7128.7591 kcal/mol (7119.3231 without restraints) Performing minimization step: 2168. Total energy = 7126.3701 kcal/mol (7116.9361 without restraints) Performing minimization step: 2169. Total energy = 7123.9814 kcal/mol (7114.5493 without restraints) Performing minimization step: 2170. Total energy = 7121.5938 kcal/mol (7112.1639 without restraints) Performing minimization step: 2171. Total energy = 7119.2072 kcal/mol (7109.7793 without restraints) Performing minimization step: 2172. Total energy = 7116.8218 kcal/mol (7107.3961 without restraints) Performing minimization step: 2173. Total energy = 7114.4372 kcal/mol (7105.0133 without restraints) Performing minimization step: 2174. Total energy = 7112.0532 kcal/mol (7102.6313 without restraints) Performing minimization step: 2175. Total energy = 7109.6697 kcal/mol (7100.2496 without restraints) Performing minimization step: 2176. Total energy = 7107.2878 kcal/mol (7097.8699 without restraints) Performing minimization step: 2177. Total energy = 7104.9064 kcal/mol (7095.4905 without restraints) Performing minimization step: 2178. Total energy = 7102.5260 kcal/mol (7093.1123 without restraints) Performing minimization step: 2179. Total energy = 7100.1468 kcal/mol (7090.7350 without restraints) Performing minimization step: 2180. Total energy = 7097.7680 kcal/mol (7088.3582 without restraints) Performing minimization step: 2181. Total energy = 7095.3902 kcal/mol (7085.9824 without restraints) Performing minimization step: 2182. Total energy = 7093.0134 kcal/mol (7083.6075 without restraints) Performing minimization step: 2183. Total energy = 7090.6368 kcal/mol (7081.2328 without restraints) Performing minimization step: 2184. Total energy = 7088.2613 kcal/mol (7078.8595 without restraints) Performing minimization step: 2185. Total energy = 7085.8869 kcal/mol (7076.4871 without restraints) Performing minimization step: 2186. Total energy = 7083.5133 kcal/mol (7074.1155 without restraints) Performing minimization step: 2187. Total energy = 7081.1406 kcal/mol (7071.7448 without restraints) Performing minimization step: 2188. Total energy = 7078.7691 kcal/mol (7069.3754 without restraints) Performing minimization step: 2189. Total energy = 7076.3982 kcal/mol (7067.0064 without restraints) Performing minimization step: 2190. Total energy = 7074.0279 kcal/mol (7064.6379 without restraints) Performing minimization step: 2191. Total energy = 7071.6585 kcal/mol (7062.2707 without restraints) Performing minimization step: 2192. Total energy = 7069.2902 kcal/mol (7059.9043 without restraints) Performing minimization step: 2193. Total energy = 7066.9226 kcal/mol (7057.5388 without restraints) Performing minimization step: 2194. Total energy = 7064.5560 kcal/mol (7055.1742 without restraints) Performing minimization step: 2195. Total energy = 7062.1901 kcal/mol (7052.8104 without restraints) Performing minimization step: 2196. Total energy = 7059.8251 kcal/mol (7050.4472 without restraints) Performing minimization step: 2197. Total energy = 7057.4607 kcal/mol (7048.0850 without restraints) Performing minimization step: 2198. Total energy = 7055.0977 kcal/mol (7045.7239 without restraints) Performing minimization step: 2199. Total energy = 7052.7352 kcal/mol (7043.3633 without restraints) Performing minimization step: 2200. Total energy = 7050.3736 kcal/mol (7041.0037 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 7048.0130 kcal/mol (7038.6451 without restraints) Performing minimization step: 2202. Total energy = 7045.6534 kcal/mol (7036.2876 without restraints) Performing minimization step: 2203. Total energy = 7043.2936 kcal/mol (7033.9300 without restraints) Performing minimization step: 2204. Total energy = 7040.9355 kcal/mol (7031.5736 without restraints) Performing minimization step: 2205. Total energy = 7038.5782 kcal/mol (7029.2183 without restraints) Performing minimization step: 2206. Total energy = 7036.2215 kcal/mol (7026.8636 without restraints) Performing minimization step: 2207. Total energy = 7033.8660 kcal/mol (7024.5100 without restraints) Performing minimization step: 2208. Total energy = 7031.5114 kcal/mol (7022.1574 without restraints) Performing minimization step: 2209. Total energy = 7029.1576 kcal/mol (7019.8056 without restraints) Performing minimization step: 2210. Total energy = 7026.8042 kcal/mol (7017.4542 without restraints) Performing minimization step: 2211. Total energy = 7024.4518 kcal/mol (7015.1038 without restraints) Performing minimization step: 2212. Total energy = 7022.1007 kcal/mol (7012.7546 without restraints) Performing minimization step: 2213. Total energy = 7019.7500 kcal/mol (7010.4059 without restraints) Performing minimization step: 2214. Total energy = 7017.4004 kcal/mol (7008.0584 without restraints) Performing minimization step: 2215. Total energy = 7015.0515 kcal/mol (7005.7114 without restraints) Performing minimization step: 2216. Total energy = 7012.7034 kcal/mol (7003.3653 without restraints) Performing minimization step: 2217. Total energy = 7010.3561 kcal/mol (7001.0200 without restraints) Performing minimization step: 2218. Total energy = 7008.0102 kcal/mol (6998.6760 without restraints) Performing minimization step: 2219. Total energy = 7005.6646 kcal/mol (6996.3324 without restraints) Performing minimization step: 2220. Total energy = 7003.3202 kcal/mol (6993.9900 without restraints) Performing minimization step: 2221. Total energy = 7000.9767 kcal/mol (6991.6484 without restraints) Performing minimization step: 2222. Total energy = 6998.6334 kcal/mol (6989.3068 without restraints) Performing minimization step: 2223. Total energy = 6996.2910 kcal/mol (6986.9667 without restraints) Performing minimization step: 2224. Total energy = 6993.9495 kcal/mol (6984.6272 without restraints) Performing minimization step: 2225. Total energy = 6991.6090 kcal/mol (6982.2885 without restraints) Performing minimization step: 2226. Total energy = 6989.2693 kcal/mol (6979.9508 without restraints) Performing minimization step: 2227. Total energy = 6986.9304 kcal/mol (6977.6139 without restraints) Performing minimization step: 2228. Total energy = 6984.5924 kcal/mol (6975.2780 without restraints) Performing minimization step: 2229. Total energy = 6982.2553 kcal/mol (6972.9428 without restraints) Performing minimization step: 2230. Total energy = 6979.9190 kcal/mol (6970.6084 without restraints) Performing minimization step: 2231. Total energy = 6977.5833 kcal/mol (6968.2746 without restraints) Performing minimization step: 2232. Total energy = 6975.2488 kcal/mol (6965.9422 without restraints) Performing minimization step: 2233. Total energy = 6972.9150 kcal/mol (6963.6100 without restraints) Performing minimization step: 2234. Total energy = 6970.5814 kcal/mol (6961.2787 without restraints) Performing minimization step: 2235. Total energy = 6968.2493 kcal/mol (6958.9485 without restraints) Performing minimization step: 2236. Total energy = 6965.9180 kcal/mol (6956.6192 without restraints) Performing minimization step: 2237. Total energy = 6963.5877 kcal/mol (6954.2908 without restraints) Performing minimization step: 2238. Total energy = 6961.2582 kcal/mol (6951.9633 without restraints) Performing minimization step: 2239. Total energy = 6958.9293 kcal/mol (6949.6363 without restraints) Performing minimization step: 2240. Total energy = 6956.6016 kcal/mol (6947.3107 without restraints) Performing minimization step: 2241. Total energy = 6954.2746 kcal/mol (6944.9855 without restraints) Performing minimization step: 2242. Total energy = 6951.9484 kcal/mol (6942.6613 without restraints) Performing minimization step: 2243. Total energy = 6949.6229 kcal/mol (6940.3377 without restraints) Performing minimization step: 2244. Total energy = 6947.2981 kcal/mol (6938.0149 without restraints) Performing minimization step: 2245. Total energy = 6944.9742 kcal/mol (6935.6930 without restraints) Performing minimization step: 2246. Total energy = 6942.6515 kcal/mol (6933.3722 without restraints) Performing minimization step: 2247. Total energy = 6940.3296 kcal/mol (6931.0522 without restraints) Performing minimization step: 2248. Total energy = 6938.0086 kcal/mol (6928.7332 without restraints) Performing minimization step: 2249. Total energy = 6935.6881 kcal/mol (6926.4146 without restraints) Performing minimization step: 2250. Total energy = 6933.3684 kcal/mol (6924.0968 without restraints) Performing minimization step: 2251. Total energy = 6931.0496 kcal/mol (6921.7801 without restraints) Performing minimization step: 2252. Total energy = 6928.7317 kcal/mol (6919.4640 without restraints) Performing minimization step: 2253. Total energy = 6926.4145 kcal/mol (6917.1488 without restraints) Performing minimization step: 2254. Total energy = 6924.0979 kcal/mol (6914.8341 without restraints) Performing minimization step: 2255. Total energy = 6921.7826 kcal/mol (6912.5207 without restraints) Performing minimization step: 2256. Total energy = 6919.4677 kcal/mol (6910.2078 without restraints) Performing minimization step: 2257. Total energy = 6917.1539 kcal/mol (6907.8959 without restraints) Performing minimization step: 2258. Total energy = 6914.8410 kcal/mol (6905.5849 without restraints) Performing minimization step: 2259. Total energy = 6912.5291 kcal/mol (6903.2750 without restraints) Performing minimization step: 2260. Total energy = 6910.2176 kcal/mol (6900.9654 without restraints) Performing minimization step: 2261. Total energy = 6907.9073 kcal/mol (6898.6570 without restraints) Performing minimization step: 2262. Total energy = 6905.5978 kcal/mol (6896.3495 without restraints) Performing minimization step: 2263. Total energy = 6903.2890 kcal/mol (6894.0426 without restraints) Performing minimization step: 2264. Total energy = 6900.9812 kcal/mol (6891.7368 without restraints) Performing minimization step: 2265. Total energy = 6898.6746 kcal/mol (6889.4321 without restraints) Performing minimization step: 2266. Total energy = 6896.3681 kcal/mol (6887.1276 without restraints) Performing minimization step: 2267. Total energy = 6894.0625 kcal/mol (6884.8239 without restraints) Performing minimization step: 2268. Total energy = 6891.7579 kcal/mol (6882.5213 without restraints) Performing minimization step: 2269. Total energy = 6889.4545 kcal/mol (6880.2199 without restraints) Performing minimization step: 2270. Total energy = 6887.1518 kcal/mol (6877.9191 without restraints) Performing minimization step: 2271. Total energy = 6884.8495 kcal/mol (6875.6185 without restraints) Performing minimization step: 2272. Total energy = 6882.5482 kcal/mol (6873.3192 without restraints) Performing minimization step: 2273. Total energy = 6880.2477 kcal/mol (6871.0207 without restraints) Performing minimization step: 2274. Total energy = 6877.9481 kcal/mol (6868.7230 without restraints) Performing minimization step: 2275. Total energy = 6875.6495 kcal/mol (6866.4262 without restraints) Performing minimization step: 2276. Total energy = 6873.3515 kcal/mol (6864.1302 without restraints) Performing minimization step: 2277. Total energy = 6871.0543 kcal/mol (6861.8348 without restraints) Performing minimization step: 2278. Total energy = 6868.7580 kcal/mol (6859.5405 without restraints) Performing minimization step: 2279. Total energy = 6866.4626 kcal/mol (6857.2471 without restraints) Performing minimization step: 2280. Total energy = 6864.1680 kcal/mol (6854.9544 without restraints) Performing minimization step: 2281. Total energy = 6861.8744 kcal/mol (6852.6628 without restraints) Performing minimization step: 2282. Total energy = 6859.5817 kcal/mol (6850.3719 without restraints) Performing minimization step: 2283. Total energy = 6857.2898 kcal/mol (6848.0819 without restraints) Performing minimization step: 2284. Total energy = 6854.9991 kcal/mol (6845.7932 without restraints) Performing minimization step: 2285. Total energy = 6852.7088 kcal/mol (6843.5048 without restraints) Performing minimization step: 2286. Total energy = 6850.4196 kcal/mol (6841.2174 without restraints) Performing minimization step: 2287. Total energy = 6848.1309 kcal/mol (6838.9307 without restraints) Performing minimization step: 2288. Total energy = 6845.8431 kcal/mol (6836.6449 without restraints) Performing minimization step: 2289. Total energy = 6843.5564 kcal/mol (6834.3603 without restraints) Performing minimization step: 2290. Total energy = 6841.2705 kcal/mol (6832.0761 without restraints) Performing minimization step: 2291. Total energy = 6838.9853 kcal/mol (6829.7927 without restraints) Performing minimization step: 2292. Total energy = 6836.7007 kcal/mol (6827.5100 without restraints) Performing minimization step: 2293. Total energy = 6834.4171 kcal/mol (6825.2284 without restraints) Performing minimization step: 2294. Total energy = 6832.1341 kcal/mol (6822.9471 without restraints) Performing minimization step: 2295. Total energy = 6829.8523 kcal/mol (6820.6674 without restraints) Performing minimization step: 2296. Total energy = 6827.5711 kcal/mol (6818.3881 without restraints) Performing minimization step: 2297. Total energy = 6825.2910 kcal/mol (6816.1099 without restraints) Performing minimization step: 2298. Total energy = 6823.0117 kcal/mol (6813.8325 without restraints) Performing minimization step: 2299. Total energy = 6820.7333 kcal/mol (6811.5560 without restraints) Performing minimization step: 2300. Total energy = 6818.4557 kcal/mol (6809.2803 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 6816.1790 kcal/mol (6807.0055 without restraints) Performing minimization step: 2302. Total energy = 6813.9031 kcal/mol (6804.7316 without restraints) Performing minimization step: 2303. Total energy = 6811.6281 kcal/mol (6802.4585 without restraints) Performing minimization step: 2304. Total energy = 6809.3538 kcal/mol (6800.1860 without restraints) Performing minimization step: 2305. Total energy = 6807.0806 kcal/mol (6797.9147 without restraints) Performing minimization step: 2306. Total energy = 6804.8080 kcal/mol (6795.6442 without restraints) Performing minimization step: 2307. Total energy = 6802.5370 kcal/mol (6793.3750 without restraints) Performing minimization step: 2308. Total energy = 6800.2663 kcal/mol (6791.1061 without restraints) Performing minimization step: 2309. Total energy = 6797.9965 kcal/mol (6788.8382 without restraints) Performing minimization step: 2310. Total energy = 6795.7277 kcal/mol (6786.5713 without restraints) Performing minimization step: 2311. Total energy = 6793.4598 kcal/mol (6784.3054 without restraints) Performing minimization step: 2312. Total energy = 6791.1928 kcal/mol (6782.0402 without restraints) Performing minimization step: 2313. Total energy = 6788.9261 kcal/mol (6779.7754 without restraints) Performing minimization step: 2314. Total energy = 6786.6606 kcal/mol (6777.5119 without restraints) Performing minimization step: 2315. Total energy = 6784.3960 kcal/mol (6775.2491 without restraints) Performing minimization step: 2316. Total energy = 6782.1323 kcal/mol (6772.9873 without restraints) Performing minimization step: 2317. Total energy = 6779.8694 kcal/mol (6770.7263 without restraints) Performing minimization step: 2318. Total energy = 6777.6074 kcal/mol (6768.4662 without restraints) Performing minimization step: 2319. Total energy = 6775.3467 kcal/mol (6766.2073 without restraints) Performing minimization step: 2320. Total energy = 6773.0864 kcal/mol (6763.9490 without restraints) Performing minimization step: 2321. Total energy = 6770.8269 kcal/mol (6761.6913 without restraints) Performing minimization step: 2322. Total energy = 6768.5686 kcal/mol (6759.4349 without restraints) Performing minimization step: 2323. Total energy = 6766.3109 kcal/mol (6757.1792 without restraints) Performing minimization step: 2324. Total energy = 6764.0541 kcal/mol (6754.9242 without restraints) Performing minimization step: 2325. Total energy = 6761.7982 kcal/mol (6752.6702 without restraints) Performing minimization step: 2326. Total energy = 6759.5434 kcal/mol (6750.4173 without restraints) Performing minimization step: 2327. Total energy = 6757.2893 kcal/mol (6748.1651 without restraints) Performing minimization step: 2328. Total energy = 6755.0361 kcal/mol (6745.9137 without restraints) Performing minimization step: 2329. Total energy = 6752.7835 kcal/mol (6743.6631 without restraints) Performing minimization step: 2330. Total energy = 6750.5320 kcal/mol (6741.4135 without restraints) Performing minimization step: 2331. Total energy = 6748.2817 kcal/mol (6739.1650 without restraints) Performing minimization step: 2332. Total energy = 6746.0319 kcal/mol (6736.9171 without restraints) Performing minimization step: 2333. Total energy = 6743.7830 kcal/mol (6734.6701 without restraints) Performing minimization step: 2334. Total energy = 6741.5352 kcal/mol (6732.4244 without restraints) Performing minimization step: 2335. Total energy = 6739.2881 kcal/mol (6730.1789 without restraints) Performing minimization step: 2336. Total energy = 6737.0419 kcal/mol (6727.9347 without restraints) Performing minimization step: 2337. Total energy = 6734.7967 kcal/mol (6725.6913 without restraints) Performing minimization step: 2338. Total energy = 6732.5531 kcal/mol (6723.4496 without restraints) Performing minimization step: 2339. Total energy = 6730.3099 kcal/mol (6721.2084 without restraints) Performing minimization step: 2340. Total energy = 6728.0675 kcal/mol (6718.9677 without restraints) Performing minimization step: 2341. Total energy = 6725.8258 kcal/mol (6716.7278 without restraints) Performing minimization step: 2342. Total energy = 6723.5849 kcal/mol (6714.4889 without restraints) Performing minimization step: 2343. Total energy = 6721.3451 kcal/mol (6712.2510 without restraints) Performing minimization step: 2344. Total energy = 6719.1066 kcal/mol (6710.0143 without restraints) Performing minimization step: 2345. Total energy = 6716.8685 kcal/mol (6707.7781 without restraints) Performing minimization step: 2346. Total energy = 6714.6313 kcal/mol (6705.5429 without restraints) Performing minimization step: 2347. Total energy = 6712.3953 kcal/mol (6703.3087 without restraints) Performing minimization step: 2348. Total energy = 6710.1602 kcal/mol (6701.0756 without restraints) Performing minimization step: 2349. Total energy = 6707.9263 kcal/mol (6698.8435 without restraints) Performing minimization step: 2350. Total energy = 6705.6927 kcal/mol (6696.6118 without restraints) Performing minimization step: 2351. Total energy = 6703.4602 kcal/mol (6694.3811 without restraints) Performing minimization step: 2352. Total energy = 6701.2288 kcal/mol (6692.1516 without restraints) Performing minimization step: 2353. Total energy = 6698.9980 kcal/mol (6689.9227 without restraints) Performing minimization step: 2354. Total energy = 6696.7681 kcal/mol (6687.6947 without restraints) Performing minimization step: 2355. Total energy = 6694.5392 kcal/mol (6685.4676 without restraints) Performing minimization step: 2356. Total energy = 6692.3112 kcal/mol (6683.2414 without restraints) Performing minimization step: 2357. Total energy = 6690.0846 kcal/mol (6681.0168 without restraints) Performing minimization step: 2358. Total energy = 6687.8584 kcal/mol (6678.7924 without restraints) Performing minimization step: 2359. Total energy = 6685.6331 kcal/mol (6676.5690 without restraints) Performing minimization step: 2360. Total energy = 6683.4087 kcal/mol (6674.3463 without restraints) Performing minimization step: 2361. Total energy = 6681.1857 kcal/mol (6672.1253 without restraints) Performing minimization step: 2362. Total energy = 6678.9631 kcal/mol (6669.9047 without restraints) Performing minimization step: 2363. Total energy = 6676.7414 kcal/mol (6667.6847 without restraints) Performing minimization step: 2364. Total energy = 6674.5211 kcal/mol (6665.4663 without restraints) Performing minimization step: 2365. Total energy = 6672.3010 kcal/mol (6663.2480 without restraints) Performing minimization step: 2366. Total energy = 6670.0825 kcal/mol (6661.0314 without restraints) Performing minimization step: 2367. Total energy = 6667.8649 kcal/mol (6658.8157 without restraints) Performing minimization step: 2368. Total energy = 6665.6480 kcal/mol (6656.6007 without restraints) Performing minimization step: 2369. Total energy = 6663.4320 kcal/mol (6654.3865 without restraints) Performing minimization step: 2370. Total energy = 6661.2170 kcal/mol (6652.1733 without restraints) Performing minimization step: 2371. Total energy = 6659.0029 kcal/mol (6649.9611 without restraints) Performing minimization step: 2372. Total energy = 6656.7897 kcal/mol (6647.7498 without restraints) Performing minimization step: 2373. Total energy = 6654.5777 kcal/mol (6645.5396 without restraints) Performing minimization step: 2374. Total energy = 6652.3668 kcal/mol (6643.3307 without restraints) Performing minimization step: 2375. Total energy = 6650.1567 kcal/mol (6641.1224 without restraints) Performing minimization step: 2376. Total energy = 6647.9474 kcal/mol (6638.9149 without restraints) Performing minimization step: 2377. Total energy = 6645.7389 kcal/mol (6636.7083 without restraints) Performing minimization step: 2378. Total energy = 6643.5314 kcal/mol (6634.5027 without restraints) Performing minimization step: 2379. Total energy = 6641.3250 kcal/mol (6632.2982 without restraints) Performing minimization step: 2380. Total energy = 6639.1197 kcal/mol (6630.0948 without restraints) Performing minimization step: 2381. Total energy = 6636.9151 kcal/mol (6627.8919 without restraints) Performing minimization step: 2382. Total energy = 6634.7113 kcal/mol (6625.6901 without restraints) Performing minimization step: 2383. Total energy = 6632.5087 kcal/mol (6623.4893 without restraints) Performing minimization step: 2384. Total energy = 6630.3075 kcal/mol (6621.2899 without restraints) Performing minimization step: 2385. Total energy = 6628.1070 kcal/mol (6619.0913 without restraints) Performing minimization step: 2386. Total energy = 6625.9074 kcal/mol (6616.8935 without restraints) Performing minimization step: 2387. Total energy = 6623.7083 kcal/mol (6614.6963 without restraints) Performing minimization step: 2388. Total energy = 6621.5104 kcal/mol (6612.5003 without restraints) Performing minimization step: 2389. Total energy = 6619.3135 kcal/mol (6610.3051 without restraints) Performing minimization step: 2390. Total energy = 6617.1176 kcal/mol (6608.1112 without restraints) Performing minimization step: 2391. Total energy = 6614.9227 kcal/mol (6605.9181 without restraints) Performing minimization step: 2392. Total energy = 6612.7284 kcal/mol (6603.7256 without restraints) Performing minimization step: 2393. Total energy = 6610.5357 kcal/mol (6601.5348 without restraints) Performing minimization step: 2394. Total energy = 6608.3437 kcal/mol (6599.3447 without restraints) Performing minimization step: 2395. Total energy = 6606.1526 kcal/mol (6597.1554 without restraints) Performing minimization step: 2396. Total energy = 6603.9625 kcal/mol (6594.9671 without restraints) Performing minimization step: 2397. Total energy = 6601.7731 kcal/mol (6592.7796 without restraints) Performing minimization step: 2398. Total energy = 6599.5853 kcal/mol (6590.5936 without restraints) Performing minimization step: 2399. Total energy = 6597.3981 kcal/mol (6588.4083 without restraints) Performing minimization step: 2400. Total energy = 6595.2119 kcal/mol (6586.2239 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 6593.0266 kcal/mol (6584.0405 without restraints) Performing minimization step: 2402. Total energy = 6590.8428 kcal/mol (6581.8585 without restraints) Performing minimization step: 2403. Total energy = 6588.6595 kcal/mol (6579.6771 without restraints) Performing minimization step: 2404. Total energy = 6586.4776 kcal/mol (6577.4971 without restraints) Performing minimization step: 2405. Total energy = 6584.2963 kcal/mol (6575.3176 without restraints) Performing minimization step: 2406. Total energy = 6582.1159 kcal/mol (6573.1391 without restraints) Performing minimization step: 2407. Total energy = 6579.9369 kcal/mol (6570.9619 without restraints) Performing minimization step: 2408. Total energy = 6577.7590 kcal/mol (6568.7858 without restraints) Performing minimization step: 2409. Total energy = 6575.5817 kcal/mol (6566.6103 without restraints) Performing minimization step: 2410. Total energy = 6573.4055 kcal/mol (6564.4361 without restraints) Performing minimization step: 2411. Total energy = 6571.2302 kcal/mol (6562.2626 without restraints) Performing minimization step: 2412. Total energy = 6569.0563 kcal/mol (6560.0905 without restraints) Performing minimization step: 2413. Total energy = 6566.8830 kcal/mol (6557.9191 without restraints) Performing minimization step: 2414. Total energy = 6564.7108 kcal/mol (6555.7487 without restraints) Performing minimization step: 2415. Total energy = 6562.5395 kcal/mol (6553.5791 without restraints) Performing minimization step: 2416. Total energy = 6560.3694 kcal/mol (6551.4110 without restraints) Performing minimization step: 2417. Total energy = 6558.2002 kcal/mol (6549.2437 without restraints) Performing minimization step: 2418. Total energy = 6556.0321 kcal/mol (6547.0773 without restraints) Performing minimization step: 2419. Total energy = 6553.8649 kcal/mol (6544.9121 without restraints) Performing minimization step: 2420. Total energy = 6551.6992 kcal/mol (6542.7482 without restraints) Performing minimization step: 2421. Total energy = 6549.5343 kcal/mol (6540.5851 without restraints) Performing minimization step: 2422. Total energy = 6547.3702 kcal/mol (6538.4228 without restraints) Performing minimization step: 2423. Total energy = 6545.2070 kcal/mol (6536.2615 without restraints) Performing minimization step: 2424. Total energy = 6543.0452 kcal/mol (6534.1014 without restraints) Performing minimization step: 2425. Total energy = 6540.8841 kcal/mol (6531.9422 without restraints) Performing minimization step: 2426. Total energy = 6538.7242 kcal/mol (6529.7842 without restraints) Performing minimization step: 2427. Total energy = 6536.5652 kcal/mol (6527.6270 without restraints) Performing minimization step: 2428. Total energy = 6534.4071 kcal/mol (6525.4706 without restraints) Performing minimization step: 2429. Total energy = 6532.2498 kcal/mol (6523.3153 without restraints) Performing minimization step: 2430. Total energy = 6530.0942 kcal/mol (6521.1615 without restraints) Performing minimization step: 2431. Total energy = 6527.9396 kcal/mol (6519.0087 without restraints) Performing minimization step: 2432. Total energy = 6525.7855 kcal/mol (6516.8565 without restraints) Performing minimization step: 2433. Total energy = 6523.6326 kcal/mol (6514.7054 without restraints) Performing minimization step: 2434. Total energy = 6521.4810 kcal/mol (6512.5556 without restraints) Performing minimization step: 2435. Total energy = 6519.3304 kcal/mol (6510.4069 without restraints) Performing minimization step: 2436. Total energy = 6517.1807 kcal/mol (6508.2590 without restraints) Performing minimization step: 2437. Total energy = 6515.0321 kcal/mol (6506.1123 without restraints) Performing minimization step: 2438. Total energy = 6512.8846 kcal/mol (6503.9667 without restraints) Performing minimization step: 2439. Total energy = 6510.7380 kcal/mol (6501.8218 without restraints) Performing minimization step: 2440. Total energy = 6508.5926 kcal/mol (6499.6782 without restraints) Performing minimization step: 2441. Total energy = 6506.4482 kcal/mol (6497.5356 without restraints) Performing minimization step: 2442. Total energy = 6504.3052 kcal/mol (6495.3945 without restraints) Performing minimization step: 2443. Total energy = 6502.1633 kcal/mol (6493.2544 without restraints) Performing minimization step: 2444. Total energy = 6500.0223 kcal/mol (6491.1153 without restraints) Performing minimization step: 2445. Total energy = 6497.8823 kcal/mol (6488.9773 without restraints) Performing minimization step: 2446. Total energy = 6495.7437 kcal/mol (6486.8404 without restraints) Performing minimization step: 2447. Total energy = 6493.6058 kcal/mol (6484.7042 without restraints) Performing minimization step: 2448. Total energy = 6491.4689 kcal/mol (6482.5692 without restraints) Performing minimization step: 2449. Total energy = 6489.3331 kcal/mol (6480.4352 without restraints) Performing minimization step: 2450. Total energy = 6487.1982 kcal/mol (6478.3022 without restraints) Performing minimization step: 2451. Total energy = 6485.0643 kcal/mol (6476.1701 without restraints) Performing minimization step: 2452. Total energy = 6482.9316 kcal/mol (6474.0393 without restraints) Performing minimization step: 2453. Total energy = 6480.8003 kcal/mol (6471.9098 without restraints) Performing minimization step: 2454. Total energy = 6478.6698 kcal/mol (6469.7811 without restraints) Performing minimization step: 2455. Total energy = 6476.5408 kcal/mol (6467.6539 without restraints) Performing minimization step: 2456. Total energy = 6474.4121 kcal/mol (6465.5270 without restraints) Performing minimization step: 2457. Total energy = 6472.2849 kcal/mol (6463.4016 without restraints) Performing minimization step: 2458. Total energy = 6470.1587 kcal/mol (6461.2773 without restraints) Performing minimization step: 2459. Total energy = 6468.0334 kcal/mol (6459.1538 without restraints) Performing minimization step: 2460. Total energy = 6465.9094 kcal/mol (6457.0317 without restraints) Performing minimization step: 2461. Total energy = 6463.7866 kcal/mol (6454.9107 without restraints) Performing minimization step: 2462. Total energy = 6461.6649 kcal/mol (6452.7909 without restraints) Performing minimization step: 2463. Total energy = 6459.5443 kcal/mol (6450.6720 without restraints) Performing minimization step: 2464. Total energy = 6457.4247 kcal/mol (6448.5543 without restraints) Performing minimization step: 2465. Total energy = 6455.3067 kcal/mol (6446.4381 without restraints) Performing minimization step: 2466. Total energy = 6453.1893 kcal/mol (6444.3225 without restraints) Performing minimization step: 2467. Total energy = 6451.0730 kcal/mol (6442.2081 without restraints) Performing minimization step: 2468. Total energy = 6448.9580 kcal/mol (6440.0949 without restraints) Performing minimization step: 2469. Total energy = 6446.8438 kcal/mol (6437.9825 without restraints) Performing minimization step: 2470. Total energy = 6444.7308 kcal/mol (6435.8713 without restraints) Performing minimization step: 2471. Total energy = 6442.6189 kcal/mol (6433.7612 without restraints) Performing minimization step: 2472. Total energy = 6440.5081 kcal/mol (6431.6523 without restraints) Performing minimization step: 2473. Total energy = 6438.3985 kcal/mol (6429.5445 without restraints) Performing minimization step: 2474. Total energy = 6436.2901 kcal/mol (6427.4380 without restraints) Performing minimization step: 2475. Total energy = 6434.1826 kcal/mol (6425.3322 without restraints) Performing minimization step: 2476. Total energy = 6432.0763 kcal/mol (6423.2278 without restraints) Performing minimization step: 2477. Total energy = 6429.9712 kcal/mol (6421.1244 without restraints) Performing minimization step: 2478. Total energy = 6427.8672 kcal/mol (6419.0223 without restraints) Performing minimization step: 2479. Total energy = 6425.7638 kcal/mol (6416.9207 without restraints) Performing minimization step: 2480. Total energy = 6423.6620 kcal/mol (6414.8207 without restraints) Performing minimization step: 2481. Total energy = 6421.5614 kcal/mol (6412.7219 without restraints) Performing minimization step: 2482. Total energy = 6419.4621 kcal/mol (6410.6245 without restraints) Performing minimization step: 2483. Total energy = 6417.3638 kcal/mol (6408.5280 without restraints) Performing minimization step: 2484. Total energy = 6415.2666 kcal/mol (6406.4326 without restraints) Performing minimization step: 2485. Total energy = 6413.1708 kcal/mol (6404.3386 without restraints) Performing minimization step: 2486. Total energy = 6411.0759 kcal/mol (6402.2455 without restraints) Performing minimization step: 2487. Total energy = 6408.9820 kcal/mol (6400.1533 without restraints) Performing minimization step: 2488. Total energy = 6406.8895 kcal/mol (6398.0628 without restraints) Performing minimization step: 2489. Total energy = 6404.7980 kcal/mol (6395.9731 without restraints) Performing minimization step: 2490. Total energy = 6402.7076 kcal/mol (6393.8845 without restraints) Performing minimization step: 2491. Total energy = 6400.6185 kcal/mol (6391.7973 without restraints) Performing minimization step: 2492. Total energy = 6398.5303 kcal/mol (6389.7108 without restraints) Performing minimization step: 2493. Total energy = 6396.4436 kcal/mol (6387.6260 without restraints) Performing minimization step: 2494. Total energy = 6394.3576 kcal/mol (6385.5419 without restraints) Performing minimization step: 2495. Total energy = 6392.2730 kcal/mol (6383.4590 without restraints) Performing minimization step: 2496. Total energy = 6390.1896 kcal/mol (6381.3775 without restraints) Performing minimization step: 2497. Total energy = 6388.1076 kcal/mol (6379.2972 without restraints) Performing minimization step: 2498. Total energy = 6386.0265 kcal/mol (6377.2179 without restraints) Performing minimization step: 2499. Total energy = 6383.9465 kcal/mol (6375.1398 without restraints) Performing minimization step: 2500. Total energy = 6381.8680 kcal/mol (6373.0631 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 6379.7907 kcal/mol (6370.9876 without restraints) Performing minimization step: 2502. Total energy = 6377.7142 kcal/mol (6368.9129 without restraints) Performing minimization step: 2503. Total energy = 6375.6390 kcal/mol (6366.8395 without restraints) Performing minimization step: 2504. Total energy = 6373.5649 kcal/mol (6364.7673 without restraints) Performing minimization step: 2505. Total energy = 6371.4922 kcal/mol (6362.6964 without restraints) Performing minimization step: 2506. Total energy = 6369.4205 kcal/mol (6360.6266 without restraints) Performing minimization step: 2507. Total energy = 6367.3500 kcal/mol (6358.5578 without restraints) Performing minimization step: 2508. Total energy = 6365.2807 kcal/mol (6356.4904 without restraints) Performing minimization step: 2509. Total energy = 6363.2125 kcal/mol (6354.4240 without restraints) Performing minimization step: 2510. Total energy = 6361.1454 kcal/mol (6352.3587 without restraints) Performing minimization step: 2511. Total energy = 6359.0797 kcal/mol (6350.2948 without restraints) Performing minimization step: 2512. Total energy = 6357.0151 kcal/mol (6348.2320 without restraints) Performing minimization step: 2513. Total energy = 6354.9519 kcal/mol (6346.1708 without restraints) Performing minimization step: 2514. Total energy = 6352.8900 kcal/mol (6344.1108 without restraints) Performing minimization step: 2515. Total energy = 6350.8292 kcal/mol (6342.0516 without restraints) Performing minimization step: 2516. Total energy = 6348.7693 kcal/mol (6339.9935 without restraints) Performing minimization step: 2517. Total energy = 6346.7107 kcal/mol (6337.9368 without restraints) Performing minimization step: 2518. Total energy = 6344.6532 kcal/mol (6335.8810 without restraints) Performing minimization step: 2519. Total energy = 6342.5970 kcal/mol (6333.8266 without restraints) Performing minimization step: 2520. Total energy = 6340.5423 kcal/mol (6331.7738 without restraints) Performing minimization step: 2521. Total energy = 6338.4888 kcal/mol (6329.7220 without restraints) Performing minimization step: 2522. Total energy = 6336.4361 kcal/mol (6327.6712 without restraints) Performing minimization step: 2523. Total energy = 6334.3847 kcal/mol (6325.6216 without restraints) Performing minimization step: 2524. Total energy = 6332.3348 kcal/mol (6323.5735 without restraints) Performing minimization step: 2525. Total energy = 6330.2856 kcal/mol (6321.5262 without restraints) Performing minimization step: 2526. Total energy = 6328.2379 kcal/mol (6319.4802 without restraints) Performing minimization step: 2527. Total energy = 6326.1914 kcal/mol (6317.4355 without restraints) Performing minimization step: 2528. Total energy = 6324.1465 kcal/mol (6315.3925 without restraints) Performing minimization step: 2529. Total energy = 6322.1025 kcal/mol (6313.3502 without restraints) Performing minimization step: 2530. Total energy = 6320.0597 kcal/mol (6311.3092 without restraints) Performing minimization step: 2531. Total energy = 6318.0182 kcal/mol (6309.2696 without restraints) Performing minimization step: 2532. Total energy = 6315.9780 kcal/mol (6307.2312 without restraints) Performing minimization step: 2533. Total energy = 6313.9391 kcal/mol (6305.1941 without restraints) Performing minimization step: 2534. Total energy = 6311.9008 kcal/mol (6303.1578 without restraints) Performing minimization step: 2535. Total energy = 6309.8647 kcal/mol (6301.1233 without restraints) Performing minimization step: 2536. Total energy = 6307.8293 kcal/mol (6299.0897 without restraints) Performing minimization step: 2537. Total energy = 6305.7951 kcal/mol (6297.0573 without restraints) Performing minimization step: 2538. Total energy = 6303.7623 kcal/mol (6295.0264 without restraints) Performing minimization step: 2539. Total energy = 6301.7306 kcal/mol (6292.9965 without restraints) Performing minimization step: 2540. Total energy = 6299.7001 kcal/mol (6290.9678 without restraints) Performing minimization step: 2541. Total energy = 6297.6711 kcal/mol (6288.9406 without restraints) Performing minimization step: 2542. Total energy = 6295.6431 kcal/mol (6286.9144 without restraints) Performing minimization step: 2543. Total energy = 6293.6162 kcal/mol (6284.8894 without restraints) Performing minimization step: 2544. Total energy = 6291.5907 kcal/mol (6282.8657 without restraints) Performing minimization step: 2545. Total energy = 6289.5665 kcal/mol (6280.8433 without restraints) Performing minimization step: 2546. Total energy = 6287.5438 kcal/mol (6278.8224 without restraints) Performing minimization step: 2547. Total energy = 6285.5221 kcal/mol (6276.8025 without restraints) Performing minimization step: 2548. Total energy = 6283.5017 kcal/mol (6274.7837 without restraints) Performing minimization step: 2549. Total energy = 6281.4822 kcal/mol (6272.7662 without restraints) Performing minimization step: 2550. Total energy = 6279.4644 kcal/mol (6270.7502 without restraints) Performing minimization step: 2551. Total energy = 6277.4476 kcal/mol (6268.7352 without restraints) Performing minimization step: 2552. Total energy = 6275.4323 kcal/mol (6266.7217 without restraints) Performing minimization step: 2553. Total energy = 6273.4181 kcal/mol (6264.7092 without restraints) Performing minimization step: 2554. Total energy = 6271.4052 kcal/mol (6262.6982 without restraints) Performing minimization step: 2555. Total energy = 6269.3936 kcal/mol (6260.6884 without restraints) Performing minimization step: 2556. Total energy = 6267.3833 kcal/mol (6258.6800 without restraints) Performing minimization step: 2557. Total energy = 6265.3743 kcal/mol (6256.6727 without restraints) Performing minimization step: 2558. Total energy = 6263.3665 kcal/mol (6254.6668 without restraints) Performing minimization step: 2559. Total energy = 6261.3600 kcal/mol (6252.6621 without restraints) Performing minimization step: 2560. Total energy = 6259.3549 kcal/mol (6250.6588 without restraints) Performing minimization step: 2561. Total energy = 6257.3514 kcal/mol (6248.6572 without restraints) Performing minimization step: 2562. Total energy = 6255.3489 kcal/mol (6246.6563 without restraints) Performing minimization step: 2563. Total energy = 6253.3475 kcal/mol (6244.6568 without restraints) Performing minimization step: 2564. Total energy = 6251.3475 kcal/mol (6242.6586 without restraints) Performing minimization step: 2565. Total energy = 6249.3491 kcal/mol (6240.6621 without restraints) Performing minimization step: 2566. Total energy = 6247.3515 kcal/mol (6238.6663 without restraints) Performing minimization step: 2567. Total energy = 6245.3554 kcal/mol (6236.6720 without restraints) Performing minimization step: 2568. Total energy = 6243.3607 kcal/mol (6234.6790 without restraints) Performing minimization step: 2569. Total energy = 6241.3671 kcal/mol (6232.6872 without restraints) Performing minimization step: 2570. Total energy = 6239.3750 kcal/mol (6230.6970 without restraints) Performing minimization step: 2571. Total energy = 6237.3841 kcal/mol (6228.7079 without restraints) Performing minimization step: 2572. Total energy = 6235.3945 kcal/mol (6226.7201 without restraints) Performing minimization step: 2573. Total energy = 6233.4061 kcal/mol (6224.7335 without restraints) Performing minimization step: 2574. Total energy = 6231.4191 kcal/mol (6222.7483 without restraints) Performing minimization step: 2575. Total energy = 6229.4336 kcal/mol (6220.7646 without restraints) Performing minimization step: 2576. Total energy = 6227.4488 kcal/mol (6218.7817 without restraints) Performing minimization step: 2577. Total energy = 6225.4662 kcal/mol (6216.8008 without restraints) Performing minimization step: 2578. Total energy = 6223.4845 kcal/mol (6214.8210 without restraints) Performing minimization step: 2579. Total energy = 6221.5043 kcal/mol (6212.8425 without restraints) Performing minimization step: 2580. Total energy = 6219.5250 kcal/mol (6210.8650 without restraints) Performing minimization step: 2581. Total energy = 6217.5469 kcal/mol (6208.8887 without restraints) Performing minimization step: 2582. Total energy = 6215.5704 kcal/mol (6206.9141 without restraints) Performing minimization step: 2583. Total energy = 6213.5956 kcal/mol (6204.9412 without restraints) Performing minimization step: 2584. Total energy = 6211.6220 kcal/mol (6202.9693 without restraints) Performing minimization step: 2585. Total energy = 6209.6496 kcal/mol (6200.9987 without restraints) Performing minimization step: 2586. Total energy = 6207.6784 kcal/mol (6199.0292 without restraints) Performing minimization step: 2587. Total energy = 6205.7083 kcal/mol (6197.0610 without restraints) Performing minimization step: 2588. Total energy = 6203.7399 kcal/mol (6195.0944 without restraints) Performing minimization step: 2589. Total energy = 6201.7726 kcal/mol (6193.1289 without restraints) Performing minimization step: 2590. Total energy = 6199.8066 kcal/mol (6191.1647 without restraints) Performing minimization step: 2591. Total energy = 6197.8421 kcal/mol (6189.2021 without restraints) Performing minimization step: 2592. Total energy = 6195.8790 kcal/mol (6187.2408 without restraints) Performing minimization step: 2593. Total energy = 6193.9174 kcal/mol (6185.2810 without restraints) Performing minimization step: 2594. Total energy = 6191.9566 kcal/mol (6183.3220 without restraints) Performing minimization step: 2595. Total energy = 6189.9974 kcal/mol (6181.3645 without restraints) Performing minimization step: 2596. Total energy = 6188.0395 kcal/mol (6179.4085 without restraints) Performing minimization step: 2597. Total energy = 6186.0829 kcal/mol (6177.4537 without restraints) Performing minimization step: 2598. Total energy = 6184.1281 kcal/mol (6175.5007 without restraints) Performing minimization step: 2599. Total energy = 6182.1746 kcal/mol (6173.5491 without restraints) Performing minimization step: 2600. Total energy = 6180.2222 kcal/mol (6171.5984 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 6178.2712 kcal/mol (6169.6492 without restraints) Performing minimization step: 2602. Total energy = 6176.3218 kcal/mol (6167.7018 without restraints) Performing minimization step: 2603. Total energy = 6174.3740 kcal/mol (6165.7556 without restraints) Performing minimization step: 2604. Total energy = 6172.4274 kcal/mol (6163.8108 without restraints) Performing minimization step: 2605. Total energy = 6170.4813 kcal/mol (6161.8664 without restraints) Performing minimization step: 2606. Total energy = 6168.5371 kcal/mol (6159.9242 without restraints) Performing minimization step: 2607. Total energy = 6166.5943 kcal/mol (6157.9831 without restraints) Performing minimization step: 2608. Total energy = 6164.6527 kcal/mol (6156.0434 without restraints) Performing minimization step: 2609. Total energy = 6162.7128 kcal/mol (6154.1053 without restraints) Performing minimization step: 2610. Total energy = 6160.7742 kcal/mol (6152.1685 without restraints) Performing minimization step: 2611. Total energy = 6158.8369 kcal/mol (6150.2330 without restraints) Performing minimization step: 2612. Total energy = 6156.9014 kcal/mol (6148.2997 without restraints) Performing minimization step: 2613. Total energy = 6154.9673 kcal/mol (6146.3670 without restraints) Performing minimization step: 2614. Total energy = 6153.0342 kcal/mol (6144.4358 without restraints) Performing minimization step: 2615. Total energy = 6151.1024 kcal/mol (6142.5057 without restraints) Performing minimization step: 2616. Total energy = 6149.1722 kcal/mol (6140.5773 without restraints) Performing minimization step: 2617. Total energy = 6147.2432 kcal/mol (6138.6501 without restraints) Performing minimization step: 2618. Total energy = 6145.3156 kcal/mol (6136.7243 without restraints) Performing minimization step: 2619. Total energy = 6143.3894 kcal/mol (6134.8000 without restraints) Performing minimization step: 2620. Total energy = 6141.4645 kcal/mol (6132.8769 without restraints) Performing minimization step: 2621. Total energy = 6139.5411 kcal/mol (6130.9553 without restraints) Performing minimization step: 2622. Total energy = 6137.6195 kcal/mol (6129.0355 without restraints) Performing minimization step: 2623. Total energy = 6135.6988 kcal/mol (6127.1166 without restraints) Performing minimization step: 2624. Total energy = 6133.7797 kcal/mol (6125.1993 without restraints) Performing minimization step: 2625. Total energy = 6131.8619 kcal/mol (6123.2833 without restraints) Performing minimization step: 2626. Total energy = 6129.9454 kcal/mol (6121.3686 without restraints) Performing minimization step: 2627. Total energy = 6128.0302 kcal/mol (6119.4552 without restraints) Performing minimization step: 2628. Total energy = 6126.1165 kcal/mol (6117.5433 without restraints) Performing minimization step: 2629. Total energy = 6124.2046 kcal/mol (6115.6333 without restraints) Performing minimization step: 2630. Total energy = 6122.2938 kcal/mol (6113.7243 without restraints) Performing minimization step: 2631. Total energy = 6120.3843 kcal/mol (6111.8166 without restraints) Performing minimization step: 2632. Total energy = 6118.4765 kcal/mol (6109.9106 without restraints) Performing minimization step: 2633. Total energy = 6116.5697 kcal/mol (6108.0055 without restraints) Performing minimization step: 2634. Total energy = 6114.6644 kcal/mol (6106.1021 without restraints) Performing minimization step: 2635. Total energy = 6112.7606 kcal/mol (6104.2001 without restraints) Performing minimization step: 2636. Total energy = 6110.8582 kcal/mol (6102.2995 without restraints) Performing minimization step: 2637. Total energy = 6108.9572 kcal/mol (6100.4003 without restraints) Performing minimization step: 2638. Total energy = 6107.0579 kcal/mol (6098.5028 without restraints) Performing minimization step: 2639. Total energy = 6105.1602 kcal/mol (6096.6069 without restraints) Performing minimization step: 2640. Total energy = 6103.2636 kcal/mol (6094.7121 without restraints) Performing minimization step: 2641. Total energy = 6101.3684 kcal/mol (6092.8188 without restraints) Performing minimization step: 2642. Total energy = 6099.4748 kcal/mol (6090.9269 without restraints) Performing minimization step: 2643. Total energy = 6097.5824 kcal/mol (6089.0363 without restraints) Performing minimization step: 2644. Total energy = 6095.6913 kcal/mol (6087.1470 without restraints) Performing minimization step: 2645. Total energy = 6093.8017 kcal/mol (6085.2593 without restraints) Performing minimization step: 2646. Total energy = 6091.9138 kcal/mol (6083.3732 without restraints) Performing minimization step: 2647. Total energy = 6090.0271 kcal/mol (6081.4883 without restraints) Performing minimization step: 2648. Total energy = 6088.1420 kcal/mol (6079.6050 without restraints) Performing minimization step: 2649. Total energy = 6086.2582 kcal/mol (6077.7230 without restraints) Performing minimization step: 2650. Total energy = 6084.3759 kcal/mol (6075.8426 without restraints) Performing minimization step: 2651. Total energy = 6082.4945 kcal/mol (6073.9629 without restraints) Performing minimization step: 2652. Total energy = 6080.6147 kcal/mol (6072.0850 without restraints) Performing minimization step: 2653. Total energy = 6078.7369 kcal/mol (6070.2089 without restraints) Performing minimization step: 2654. Total energy = 6076.8606 kcal/mol (6068.3347 without restraints) Performing minimization step: 2655. Total energy = 6074.9853 kcal/mol (6066.4609 without restraints) Performing minimization step: 2656. Total energy = 6073.1115 kcal/mol (6064.5890 without restraints) Performing minimization step: 2657. Total energy = 6071.2393 kcal/mol (6062.7186 without restraints) Performing minimization step: 2658. Total energy = 6069.3687 kcal/mol (6060.8498 without restraints) Performing minimization step: 2659. Total energy = 6067.4993 kcal/mol (6058.9821 without restraints) Performing minimization step: 2660. Total energy = 6065.6312 kcal/mol (6057.1159 without restraints) Performing minimization step: 2661. Total energy = 6063.7647 kcal/mol (6055.2512 without restraints) Performing minimization step: 2662. Total energy = 6061.8993 kcal/mol (6053.3877 without restraints) Performing minimization step: 2663. Total energy = 6060.0359 kcal/mol (6051.5260 without restraints) Performing minimization step: 2664. Total energy = 6058.1737 kcal/mol (6049.6657 without restraints) Performing minimization step: 2665. Total energy = 6056.3129 kcal/mol (6047.8068 without restraints) Performing minimization step: 2666. Total energy = 6054.4538 kcal/mol (6045.9494 without restraints) Performing minimization step: 2667. Total energy = 6052.5961 kcal/mol (6044.0934 without restraints) Performing minimization step: 2668. Total energy = 6050.7397 kcal/mol (6042.2389 without restraints) Performing minimization step: 2669. Total energy = 6048.8849 kcal/mol (6040.3858 without restraints) Performing minimization step: 2670. Total energy = 6047.0321 kcal/mol (6038.5352 without restraints) Performing minimization step: 2671. Total energy = 6045.1805 kcal/mol (6036.6850 without restraints) Performing minimization step: 2672. Total energy = 6043.3300 kcal/mol (6034.8364 without restraints) Performing minimization step: 2673. Total energy = 6041.4810 kcal/mol (6032.9892 without restraints) Performing minimization step: 2674. Total energy = 6039.6335 kcal/mol (6031.1435 without restraints) Performing minimization step: 2675. Total energy = 6037.7875 kcal/mol (6029.2993 without restraints) Performing minimization step: 2676. Total energy = 6035.9426 kcal/mol (6027.4563 without restraints) Performing minimization step: 2677. Total energy = 6034.0995 kcal/mol (6025.6149 without restraints) Performing minimization step: 2678. Total energy = 6032.2582 kcal/mol (6023.7754 without restraints) Performing minimization step: 2679. Total energy = 6030.4183 kcal/mol (6021.9373 without restraints) Performing minimization step: 2680. Total energy = 6028.5792 kcal/mol (6020.1001 without restraints) Performing minimization step: 2681. Total energy = 6026.7420 kcal/mol (6018.2647 without restraints) Performing minimization step: 2682. Total energy = 6024.9062 kcal/mol (6016.4307 without restraints) Performing minimization step: 2683. Total energy = 6023.0720 kcal/mol (6014.5983 without restraints) Performing minimization step: 2684. Total energy = 6021.2390 kcal/mol (6012.7671 without restraints) Performing minimization step: 2685. Total energy = 6019.4078 kcal/mol (6010.9377 without restraints) Performing minimization step: 2686. Total energy = 6017.5780 kcal/mol (6009.1097 without restraints) Performing minimization step: 2687. Total energy = 6015.7497 kcal/mol (6007.2833 without restraints) Performing minimization step: 2688. Total energy = 6013.9227 kcal/mol (6005.4581 without restraints) Performing minimization step: 2689. Total energy = 6012.0976 kcal/mol (6003.6348 without restraints) Performing minimization step: 2690. Total energy = 6010.2740 kcal/mol (6001.8130 without restraints) Performing minimization step: 2691. Total energy = 6008.4515 kcal/mol (5999.9922 without restraints) Performing minimization step: 2692. Total energy = 6006.6305 kcal/mol (5998.1731 without restraints) Performing minimization step: 2693. Total energy = 6004.8111 kcal/mol (5996.3555 without restraints) Performing minimization step: 2694. Total energy = 6002.9932 kcal/mol (5994.5394 without restraints) Performing minimization step: 2695. Total energy = 6001.1767 kcal/mol (5992.7248 without restraints) Performing minimization step: 2696. Total energy = 5999.3618 kcal/mol (5990.9116 without restraints) Performing minimization step: 2697. Total energy = 5997.5484 kcal/mol (5989.1000 without restraints) Performing minimization step: 2698. Total energy = 5995.7363 kcal/mol (5987.2897 without restraints) Performing minimization step: 2699. Total energy = 5993.9258 kcal/mol (5985.4811 without restraints) Performing minimization step: 2700. Total energy = 5992.1171 kcal/mol (5983.6743 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 5990.3099 kcal/mol (5981.8687 without restraints) Performing minimization step: 2702. Total energy = 5988.5041 kcal/mol (5980.0648 without restraints) Performing minimization step: 2703. Total energy = 5986.6996 kcal/mol (5978.2621 without restraints) Performing minimization step: 2704. Total energy = 5984.8969 kcal/mol (5976.4612 without restraints) Performing minimization step: 2705. Total energy = 5983.0955 kcal/mol (5974.6618 without restraints) Performing minimization step: 2706. Total energy = 5981.2954 kcal/mol (5972.8636 without restraints) Performing minimization step: 2707. Total energy = 5979.4973 kcal/mol (5971.0670 without restraints) Performing minimization step: 2708. Total energy = 5977.7002 kcal/mol (5969.2718 without restraints) Performing minimization step: 2709. Total energy = 5975.9046 kcal/mol (5967.4779 without restraints) Performing minimization step: 2710. Total energy = 5974.1108 kcal/mol (5965.6860 without restraints) Performing minimization step: 2711. Total energy = 5972.3183 kcal/mol (5963.8953 without restraints) Performing minimization step: 2712. Total energy = 5970.5278 kcal/mol (5962.1066 without restraints) Performing minimization step: 2713. Total energy = 5968.7383 kcal/mol (5960.3190 without restraints) Performing minimization step: 2714. Total energy = 5966.9506 kcal/mol (5958.5331 without restraints) Performing minimization step: 2715. Total energy = 5965.1644 kcal/mol (5956.7487 without restraints) Performing minimization step: 2716. Total energy = 5963.3800 kcal/mol (5954.9660 without restraints) Performing minimization step: 2717. Total energy = 5961.5966 kcal/mol (5953.1845 without restraints) Performing minimization step: 2718. Total energy = 5959.8148 kcal/mol (5951.4046 without restraints) Performing minimization step: 2719. Total energy = 5958.0349 kcal/mol (5949.6264 without restraints) Performing minimization step: 2720. Total energy = 5956.2561 kcal/mol (5947.8495 without restraints) Performing minimization step: 2721. Total energy = 5954.4792 kcal/mol (5946.0746 without restraints) Performing minimization step: 2722. Total energy = 5952.7036 kcal/mol (5944.3006 without restraints) Performing minimization step: 2723. Total energy = 5950.9293 kcal/mol (5942.5280 without restraints) Performing minimization step: 2724. Total energy = 5949.1566 kcal/mol (5940.7572 without restraints) Performing minimization step: 2725. Total energy = 5947.3850 kcal/mol (5938.9872 without restraints) Performing minimization step: 2726. Total energy = 5945.6153 kcal/mol (5937.2195 without restraints) Performing minimization step: 2727. Total energy = 5943.8473 kcal/mol (5935.4533 without restraints) Performing minimization step: 2728. Total energy = 5942.0808 kcal/mol (5933.6886 without restraints) Performing minimization step: 2729. Total energy = 5940.3158 kcal/mol (5931.9255 without restraints) Performing minimization step: 2730. Total energy = 5938.5520 kcal/mol (5930.1634 without restraints) Performing minimization step: 2731. Total energy = 5936.7898 kcal/mol (5928.4030 without restraints) Performing minimization step: 2732. Total energy = 5935.0293 kcal/mol (5926.6444 without restraints) Performing minimization step: 2733. Total energy = 5933.2704 kcal/mol (5924.8873 without restraints) Performing minimization step: 2734. Total energy = 5931.5131 kcal/mol (5923.1318 without restraints) Performing minimization step: 2735. Total energy = 5929.7574 kcal/mol (5921.3780 without restraints) Performing minimization step: 2736. Total energy = 5928.0029 kcal/mol (5919.6253 without restraints) Performing minimization step: 2737. Total energy = 5926.2499 kcal/mol (5917.8741 without restraints) Performing minimization step: 2738. Total energy = 5924.4988 kcal/mol (5916.1248 without restraints) Performing minimization step: 2739. Total energy = 5922.7492 kcal/mol (5914.3770 without restraints) Performing minimization step: 2740. Total energy = 5921.0008 kcal/mol (5912.6304 without restraints) Performing minimization step: 2741. Total energy = 5919.2539 kcal/mol (5910.8853 without restraints) Performing minimization step: 2742. Total energy = 5917.5090 kcal/mol (5909.1422 without restraints) Performing minimization step: 2743. Total energy = 5915.7651 kcal/mol (5907.4002 without restraints) Performing minimization step: 2744. Total energy = 5914.0230 kcal/mol (5905.6598 without restraints) Performing minimization step: 2745. Total energy = 5912.2823 kcal/mol (5903.9210 without restraints) Performing minimization step: 2746. Total energy = 5910.5431 kcal/mol (5902.1836 without restraints) Performing minimization step: 2747. Total energy = 5908.8055 kcal/mol (5900.4479 without restraints) Performing minimization step: 2748. Total energy = 5907.0694 kcal/mol (5898.7135 without restraints) Performing minimization step: 2749. Total energy = 5905.3349 kcal/mol (5896.9808 without restraints) Performing minimization step: 2750. Total energy = 5903.6019 kcal/mol (5895.2498 without restraints) Performing minimization step: 2751. Total energy = 5901.8703 kcal/mol (5893.5200 without restraints) Performing minimization step: 2752. Total energy = 5900.1404 kcal/mol (5891.7918 without restraints) Performing minimization step: 2753. Total energy = 5898.4119 kcal/mol (5890.0650 without restraints) Performing minimization step: 2754. Total energy = 5896.6848 kcal/mol (5888.3398 without restraints) Performing minimization step: 2755. Total energy = 5894.9595 kcal/mol (5886.6163 without restraints) Performing minimization step: 2756. Total energy = 5893.2360 kcal/mol (5884.8946 without restraints) Performing minimization step: 2757. Total energy = 5891.5140 kcal/mol (5883.1745 without restraints) Performing minimization step: 2758. Total energy = 5889.7931 kcal/mol (5881.4554 without restraints) Performing minimization step: 2759. Total energy = 5888.0740 kcal/mol (5879.7381 without restraints) Performing minimization step: 2760. Total energy = 5886.3562 kcal/mol (5878.0221 without restraints) Performing minimization step: 2761. Total energy = 5884.6400 kcal/mol (5876.3077 without restraints) Performing minimization step: 2762. Total energy = 5882.9253 kcal/mol (5874.5949 without restraints) Performing minimization step: 2763. Total energy = 5881.2123 kcal/mol (5872.8836 without restraints) Performing minimization step: 2764. Total energy = 5879.5006 kcal/mol (5871.1738 without restraints) Performing minimization step: 2765. Total energy = 5877.7906 kcal/mol (5869.4656 without restraints) Performing minimization step: 2766. Total energy = 5876.0820 kcal/mol (5867.7588 without restraints) Performing minimization step: 2767. Total energy = 5874.3751 kcal/mol (5866.0539 without restraints) Performing minimization step: 2768. Total energy = 5872.6700 kcal/mol (5864.3505 without restraints) Performing minimization step: 2769. Total energy = 5870.9661 kcal/mol (5862.6484 without restraints) Performing minimization step: 2770. Total energy = 5869.2637 kcal/mol (5860.9478 without restraints) Performing minimization step: 2771. Total energy = 5867.5631 kcal/mol (5859.2493 without restraints) Performing minimization step: 2772. Total energy = 5865.8641 kcal/mol (5857.5518 without restraints) Performing minimization step: 2773. Total energy = 5864.1664 kcal/mol (5855.8559 without restraints) Performing minimization step: 2774. Total energy = 5862.4702 kcal/mol (5854.1615 without restraints) Performing minimization step: 2775. Total energy = 5860.7753 kcal/mol (5852.4684 without restraints) Performing minimization step: 2776. Total energy = 5859.0823 kcal/mol (5850.7773 without restraints) Performing minimization step: 2777. Total energy = 5857.3906 kcal/mol (5849.0874 without restraints) Performing minimization step: 2778. Total energy = 5855.7003 kcal/mol (5847.3989 without restraints) Performing minimization step: 2779. Total energy = 5854.0118 kcal/mol (5845.7123 without restraints) Performing minimization step: 2780. Total energy = 5852.3249 kcal/mol (5844.0270 without restraints) Performing minimization step: 2781. Total energy = 5850.6398 kcal/mol (5842.3439 without restraints) Performing minimization step: 2782. Total energy = 5848.9565 kcal/mol (5840.6626 without restraints) Performing minimization step: 2783. Total energy = 5847.2746 kcal/mol (5838.9823 without restraints) Performing minimization step: 2784. Total energy = 5845.5939 kcal/mol (5837.3034 without restraints) Performing minimization step: 2785. Total energy = 5843.9145 kcal/mol (5835.6259 without restraints) Performing minimization step: 2786. Total energy = 5842.2369 kcal/mol (5833.9501 without restraints) Performing minimization step: 2787. Total energy = 5840.5610 kcal/mol (5832.2760 without restraints) Performing minimization step: 2788. Total energy = 5838.8861 kcal/mol (5830.6029 without restraints) Performing minimization step: 2789. Total energy = 5837.2131 kcal/mol (5828.9317 without restraints) Performing minimization step: 2790. Total energy = 5835.5414 kcal/mol (5827.2618 without restraints) Performing minimization step: 2791. Total energy = 5833.8715 kcal/mol (5825.5937 without restraints) Performing minimization step: 2792. Total energy = 5832.2029 kcal/mol (5823.9270 without restraints) Performing minimization step: 2793. Total energy = 5830.5358 kcal/mol (5822.2617 without restraints) Performing minimization step: 2794. Total energy = 5828.8703 kcal/mol (5820.5981 without restraints) Performing minimization step: 2795. Total energy = 5827.2063 kcal/mol (5818.9358 without restraints) Performing minimization step: 2796. Total energy = 5825.5439 kcal/mol (5817.2752 without restraints) Performing minimization step: 2797. Total energy = 5823.8830 kcal/mol (5815.6162 without restraints) Performing minimization step: 2798. Total energy = 5822.2244 kcal/mol (5813.9593 without restraints) Performing minimization step: 2799. Total energy = 5820.5667 kcal/mol (5812.3034 without restraints) Performing minimization step: 2800. Total energy = 5818.9104 kcal/mol (5810.6490 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 5817.2557 kcal/mol (5808.9961 without restraints) Performing minimization step: 2802. Total energy = 5815.6030 kcal/mol (5807.3452 without restraints) Performing minimization step: 2803. Total energy = 5813.9514 kcal/mol (5805.6954 without restraints) Performing minimization step: 2804. Total energy = 5812.3014 kcal/mol (5804.0472 without restraints) Performing minimization step: 2805. Total energy = 5810.6529 kcal/mol (5802.4006 without restraints) Performing minimization step: 2806. Total energy = 5809.0060 kcal/mol (5800.7555 without restraints) Performing minimization step: 2807. Total energy = 5807.3608 kcal/mol (5799.1121 without restraints) Performing minimization step: 2808. Total energy = 5805.7169 kcal/mol (5797.4700 without restraints) Performing minimization step: 2809. Total energy = 5804.0749 kcal/mol (5795.8299 without restraints) Performing minimization step: 2810. Total energy = 5802.4341 kcal/mol (5794.1908 without restraints) Performing minimization step: 2811. Total energy = 5800.7946 kcal/mol (5792.5532 without restraints) Performing minimization step: 2812. Total energy = 5799.1569 kcal/mol (5790.9173 without restraints) Performing minimization step: 2813. Total energy = 5797.5207 kcal/mol (5789.2830 without restraints) Performing minimization step: 2814. Total energy = 5795.8861 kcal/mol (5787.6501 without restraints) Performing minimization step: 2815. Total energy = 5794.2529 kcal/mol (5786.0188 without restraints) Performing minimization step: 2816. Total energy = 5792.6218 kcal/mol (5784.3895 without restraints) Performing minimization step: 2817. Total energy = 5790.9918 kcal/mol (5782.7613 without restraints) Performing minimization step: 2818. Total energy = 5789.3630 kcal/mol (5781.1344 without restraints) Performing minimization step: 2819. Total energy = 5787.7363 kcal/mol (5779.5094 without restraints) Performing minimization step: 2820. Total energy = 5786.1108 kcal/mol (5777.8858 without restraints) Performing minimization step: 2821. Total energy = 5784.4867 kcal/mol (5776.2636 without restraints) Performing minimization step: 2822. Total energy = 5782.8645 kcal/mol (5774.6432 without restraints) Performing minimization step: 2823. Total energy = 5781.2437 kcal/mol (5773.0241 without restraints) Performing minimization step: 2824. Total energy = 5779.6244 kcal/mol (5771.4067 without restraints) Performing minimization step: 2825. Total energy = 5778.0067 kcal/mol (5769.7908 without restraints) Performing minimization step: 2826. Total energy = 5776.3905 kcal/mol (5768.1764 without restraints) Performing minimization step: 2827. Total energy = 5774.7758 kcal/mol (5766.5634 without restraints) Performing minimization step: 2828. Total energy = 5773.1625 kcal/mol (5764.9521 without restraints) Performing minimization step: 2829. Total energy = 5771.5511 kcal/mol (5763.3425 without restraints) Performing minimization step: 2830. Total energy = 5769.9411 kcal/mol (5761.7344 without restraints) Performing minimization step: 2831. Total energy = 5768.3325 kcal/mol (5760.1275 without restraints) Performing minimization step: 2832. Total energy = 5766.7255 kcal/mol (5758.5224 without restraints) Performing minimization step: 2833. Total energy = 5765.1200 kcal/mol (5756.9187 without restraints) Performing minimization step: 2834. Total energy = 5763.5161 kcal/mol (5755.3165 without restraints) Performing minimization step: 2835. Total energy = 5761.9137 kcal/mol (5753.7160 without restraints) Performing minimization step: 2836. Total energy = 5760.3120 kcal/mol (5752.1162 without restraints) Performing minimization step: 2837. Total energy = 5758.7127 kcal/mol (5750.5186 without restraints) Performing minimization step: 2838. Total energy = 5757.1149 kcal/mol (5748.9227 without restraints) Performing minimization step: 2839. Total energy = 5755.5188 kcal/mol (5747.3284 without restraints) Performing minimization step: 2840. Total energy = 5753.9238 kcal/mol (5745.7352 without restraints) Performing minimization step: 2841. Total energy = 5752.3306 kcal/mol (5744.1438 without restraints) Performing minimization step: 2842. Total energy = 5750.7389 kcal/mol (5742.5540 without restraints) Performing minimization step: 2843. Total energy = 5749.1486 kcal/mol (5740.9655 without restraints) Performing minimization step: 2844. Total energy = 5747.5600 kcal/mol (5739.3787 without restraints) Performing minimization step: 2845. Total energy = 5745.9729 kcal/mol (5737.7934 without restraints) Performing minimization step: 2846. Total energy = 5744.3878 kcal/mol (5736.2101 without restraints) Performing minimization step: 2847. Total energy = 5742.8039 kcal/mol (5734.6281 without restraints) Performing minimization step: 2848. Total energy = 5741.2214 kcal/mol (5733.0474 without restraints) Performing minimization step: 2849. Total energy = 5739.6408 kcal/mol (5731.4686 without restraints) Performing minimization step: 2850. Total energy = 5738.0613 kcal/mol (5729.8910 without restraints) Performing minimization step: 2851. Total energy = 5736.4837 kcal/mol (5728.3151 without restraints) Performing minimization step: 2852. Total energy = 5734.9073 kcal/mol (5726.7405 without restraints) Performing minimization step: 2853. Total energy = 5733.3324 kcal/mol (5725.1675 without restraints) Performing minimization step: 2854. Total energy = 5731.7590 kcal/mol (5723.5960 without restraints) Performing minimization step: 2855. Total energy = 5730.1872 kcal/mol (5722.0260 without restraints) Performing minimization step: 2856. Total energy = 5728.6169 kcal/mol (5720.4575 without restraints) Performing minimization step: 2857. Total energy = 5727.0485 kcal/mol (5718.8909 without restraints) Performing minimization step: 2858. Total energy = 5725.4811 kcal/mol (5717.3254 without restraints) Performing minimization step: 2859. Total energy = 5723.9155 kcal/mol (5715.7615 without restraints) Performing minimization step: 2860. Total energy = 5722.3513 kcal/mol (5714.1991 without restraints) Performing minimization step: 2861. Total energy = 5720.7887 kcal/mol (5712.6385 without restraints) Performing minimization step: 2862. Total energy = 5719.2280 kcal/mol (5711.0795 without restraints) Performing minimization step: 2863. Total energy = 5717.6688 kcal/mol (5709.5221 without restraints) Performing minimization step: 2864. Total energy = 5716.1107 kcal/mol (5707.9658 without restraints) Performing minimization step: 2865. Total energy = 5714.5540 kcal/mol (5706.4110 without restraints) Performing minimization step: 2866. Total energy = 5712.9989 kcal/mol (5704.8576 without restraints) Performing minimization step: 2867. Total energy = 5711.4453 kcal/mol (5703.3059 without restraints) Performing minimization step: 2868. Total energy = 5709.8934 kcal/mol (5701.7558 without restraints) Performing minimization step: 2869. Total energy = 5708.3432 kcal/mol (5700.2075 without restraints) Performing minimization step: 2870. Total energy = 5706.7944 kcal/mol (5698.6605 without restraints) Performing minimization step: 2871. Total energy = 5705.2471 kcal/mol (5697.1150 without restraints) Performing minimization step: 2872. Total energy = 5703.7014 kcal/mol (5695.5711 without restraints) Performing minimization step: 2873. Total energy = 5702.1569 kcal/mol (5694.0284 without restraints) Performing minimization step: 2874. Total energy = 5700.6138 kcal/mol (5692.4872 without restraints) Performing minimization step: 2875. Total energy = 5699.0725 kcal/mol (5690.9475 without restraints) Performing minimization step: 2876. Total energy = 5697.5323 kcal/mol (5689.4093 without restraints) Performing minimization step: 2877. Total energy = 5695.9940 kcal/mol (5687.8728 without restraints) Performing minimization step: 2878. Total energy = 5694.4571 kcal/mol (5686.3377 without restraints) Performing minimization step: 2879. Total energy = 5692.9216 kcal/mol (5684.8040 without restraints) Performing minimization step: 2880. Total energy = 5691.3874 kcal/mol (5683.2716 without restraints) Performing minimization step: 2881. Total energy = 5689.8551 kcal/mol (5681.7412 without restraints) Performing minimization step: 2882. Total energy = 5688.3238 kcal/mol (5680.2118 without restraints) Performing minimization step: 2883. Total energy = 5686.7946 kcal/mol (5678.6843 without restraints) Performing minimization step: 2884. Total energy = 5685.2668 kcal/mol (5677.1585 without restraints) Performing minimization step: 2885. Total energy = 5683.7405 kcal/mol (5675.6339 without restraints) Performing minimization step: 2886. Total energy = 5682.2155 kcal/mol (5674.1109 without restraints) Performing minimization step: 2887. Total energy = 5680.6922 kcal/mol (5672.5893 without restraints) Performing minimization step: 2888. Total energy = 5679.1705 kcal/mol (5671.0693 without restraints) Performing minimization step: 2889. Total energy = 5677.6501 kcal/mol (5669.5508 without restraints) Performing minimization step: 2890. Total energy = 5676.1311 kcal/mol (5668.0336 without restraints) Performing minimization step: 2891. Total energy = 5674.6133 kcal/mol (5666.5176 without restraints) Performing minimization step: 2892. Total energy = 5673.0972 kcal/mol (5665.0033 without restraints) Performing minimization step: 2893. Total energy = 5671.5832 kcal/mol (5663.4913 without restraints) Performing minimization step: 2894. Total energy = 5670.0705 kcal/mol (5661.9804 without restraints) Performing minimization step: 2895. Total energy = 5668.5592 kcal/mol (5660.4709 without restraints) Performing minimization step: 2896. Total energy = 5667.0495 kcal/mol (5658.9630 without restraints) Performing minimization step: 2897. Total energy = 5665.5407 kcal/mol (5657.4560 without restraints) Performing minimization step: 2898. Total energy = 5664.0340 kcal/mol (5655.9511 without restraints) Performing minimization step: 2899. Total energy = 5662.5286 kcal/mol (5654.4475 without restraints) Performing minimization step: 2900. Total energy = 5661.0247 kcal/mol (5652.9454 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 5659.5223 kcal/mol (5651.4448 without restraints) Performing minimization step: 2902. Total energy = 5658.0211 kcal/mol (5649.9455 without restraints) Performing minimization step: 2903. Total energy = 5656.5217 kcal/mol (5648.4480 without restraints) Performing minimization step: 2904. Total energy = 5655.0237 kcal/mol (5646.9518 without restraints) Performing minimization step: 2905. Total energy = 5653.5272 kcal/mol (5645.4571 without restraints) Performing minimization step: 2906. Total energy = 5652.0322 kcal/mol (5643.9638 without restraints) Performing minimization step: 2907. Total energy = 5650.5388 kcal/mol (5642.4723 without restraints) Performing minimization step: 2908. Total energy = 5649.0472 kcal/mol (5640.9825 without restraints) Performing minimization step: 2909. Total energy = 5647.5571 kcal/mol (5639.4942 without restraints) Performing minimization step: 2910. Total energy = 5646.0684 kcal/mol (5638.0074 without restraints) Performing minimization step: 2911. Total energy = 5644.5808 kcal/mol (5636.5215 without restraints) Performing minimization step: 2912. Total energy = 5643.0949 kcal/mol (5635.0375 without restraints) Performing minimization step: 2913. Total energy = 5641.6099 kcal/mol (5633.5543 without restraints) Performing minimization step: 2914. Total energy = 5640.1269 kcal/mol (5632.0731 without restraints) Performing minimization step: 2915. Total energy = 5638.6454 kcal/mol (5630.5937 without restraints) Performing minimization step: 2916. Total energy = 5637.1654 kcal/mol (5629.1153 without restraints) Performing minimization step: 2917. Total energy = 5635.6870 kcal/mol (5627.6388 without restraints) Performing minimization step: 2918. Total energy = 5634.2100 kcal/mol (5626.1635 without restraints) Performing minimization step: 2919. Total energy = 5632.7344 kcal/mol (5624.6897 without restraints) Performing minimization step: 2920. Total energy = 5631.2603 kcal/mol (5623.2174 without restraints) Performing minimization step: 2921. Total energy = 5629.7874 kcal/mol (5621.7464 without restraints) Performing minimization step: 2922. Total energy = 5628.3162 kcal/mol (5620.2770 without restraints) Performing minimization step: 2923. Total energy = 5626.8465 kcal/mol (5618.8091 without restraints) Performing minimization step: 2924. Total energy = 5625.3780 kcal/mol (5617.3425 without restraints) Performing minimization step: 2925. Total energy = 5623.9107 kcal/mol (5615.8770 without restraints) Performing minimization step: 2926. Total energy = 5622.4454 kcal/mol (5614.4136 without restraints) Performing minimization step: 2927. Total energy = 5620.9822 kcal/mol (5612.9521 without restraints) Performing minimization step: 2928. Total energy = 5619.5196 kcal/mol (5611.4914 without restraints) Performing minimization step: 2929. Total energy = 5618.0590 kcal/mol (5610.0326 without restraints) Performing minimization step: 2930. Total energy = 5616.5998 kcal/mol (5608.5752 without restraints) Performing minimization step: 2931. Total energy = 5615.1415 kcal/mol (5607.1189 without restraints) Performing minimization step: 2932. Total energy = 5613.6850 kcal/mol (5605.6640 without restraints) Performing minimization step: 2933. Total energy = 5612.2298 kcal/mol (5604.2107 without restraints) Performing minimization step: 2934. Total energy = 5610.7763 kcal/mol (5602.7590 without restraints) Performing minimization step: 2935. Total energy = 5609.3239 kcal/mol (5601.3084 without restraints) Performing minimization step: 2936. Total energy = 5607.8734 kcal/mol (5599.8597 without restraints) Performing minimization step: 2937. Total energy = 5606.4239 kcal/mol (5598.4120 without restraints) Performing minimization step: 2938. Total energy = 5604.9762 kcal/mol (5596.9662 without restraints) Performing minimization step: 2939. Total energy = 5603.5297 kcal/mol (5595.5216 without restraints) Performing minimization step: 2940. Total energy = 5602.0849 kcal/mol (5594.0785 without restraints) Performing minimization step: 2941. Total energy = 5600.6412 kcal/mol (5592.6367 without restraints) Performing minimization step: 2942. Total energy = 5599.1990 kcal/mol (5591.1963 without restraints) Performing minimization step: 2943. Total energy = 5597.7582 kcal/mol (5589.7573 without restraints) Performing minimization step: 2944. Total energy = 5596.3191 kcal/mol (5588.3201 without restraints) Performing minimization step: 2945. Total energy = 5594.8815 kcal/mol (5586.8843 without restraints) Performing minimization step: 2946. Total energy = 5593.4453 kcal/mol (5585.4499 without restraints) Performing minimization step: 2947. Total energy = 5592.0103 kcal/mol (5584.0167 without restraints) Performing minimization step: 2948. Total energy = 5590.5771 kcal/mol (5582.5852 without restraints) Performing minimization step: 2949. Total energy = 5589.1449 kcal/mol (5581.1549 without restraints) Performing minimization step: 2950. Total energy = 5587.7143 kcal/mol (5579.7261 without restraints) Performing minimization step: 2951. Total energy = 5586.2850 kcal/mol (5578.2987 without restraints) Performing minimization step: 2952. Total energy = 5584.8576 kcal/mol (5576.8732 without restraints) Performing minimization step: 2953. Total energy = 5583.4315 kcal/mol (5575.4488 without restraints) Performing minimization step: 2954. Total energy = 5582.0066 kcal/mol (5574.0257 without restraints) Performing minimization step: 2955. Total energy = 5580.5836 kcal/mol (5572.6046 without restraints) Performing minimization step: 2956. Total energy = 5579.1616 kcal/mol (5571.1844 without restraints) Performing minimization step: 2957. Total energy = 5577.7411 kcal/mol (5569.7657 without restraints) Performing minimization step: 2958. Total energy = 5576.3219 kcal/mol (5568.3484 without restraints) Performing minimization step: 2959. Total energy = 5574.9044 kcal/mol (5566.9329 without restraints) Performing minimization step: 2960. Total energy = 5573.4882 kcal/mol (5565.5183 without restraints) Performing minimization step: 2961. Total energy = 5572.0732 kcal/mol (5564.1051 without restraints) Performing minimization step: 2962. Total energy = 5570.6597 kcal/mol (5562.6935 without restraints) Performing minimization step: 2963. Total energy = 5569.2477 kcal/mol (5561.2832 without restraints) Performing minimization step: 2964. Total energy = 5567.8373 kcal/mol (5559.8747 without restraints) Performing minimization step: 2965. Total energy = 5566.4281 kcal/mol (5558.4673 without restraints) Performing minimization step: 2966. Total energy = 5565.0202 kcal/mol (5557.0613 without restraints) Performing minimization step: 2967. Total energy = 5563.6140 kcal/mol (5555.6569 without restraints) Performing minimization step: 2968. Total energy = 5562.2090 kcal/mol (5554.2537 without restraints) Performing minimization step: 2969. Total energy = 5560.8057 kcal/mol (5552.8521 without restraints) Performing minimization step: 2970. Total energy = 5559.4035 kcal/mol (5551.4518 without restraints) Performing minimization step: 2971. Total energy = 5558.0026 kcal/mol (5550.0528 without restraints) Performing minimization step: 2972. Total energy = 5556.6037 kcal/mol (5548.6556 without restraints) Performing minimization step: 2973. Total energy = 5555.2061 kcal/mol (5547.2601 without restraints) Performing minimization step: 2974. Total energy = 5553.8101 kcal/mol (5545.8657 without restraints) Performing minimization step: 2975. Total energy = 5552.4145 kcal/mol (5544.4719 without restraints) Performing minimization step: 2976. Total energy = 5551.0206 kcal/mol (5543.0798 without restraints) Performing minimization step: 2977. Total energy = 5549.6283 kcal/mol (5541.6893 without restraints) Performing minimization step: 2978. Total energy = 5548.2382 kcal/mol (5540.3012 without restraints) Performing minimization step: 2979. Total energy = 5546.8488 kcal/mol (5538.9135 without restraints) Performing minimization step: 2980. Total energy = 5545.4612 kcal/mol (5537.5276 without restraints) Performing minimization step: 2981. Total energy = 5544.0745 kcal/mol (5536.1429 without restraints) Performing minimization step: 2982. Total energy = 5542.6896 kcal/mol (5534.7598 without restraints) Performing minimization step: 2983. Total energy = 5541.3056 kcal/mol (5533.3775 without restraints) Performing minimization step: 2984. Total energy = 5539.9229 kcal/mol (5531.9966 without restraints) Performing minimization step: 2985. Total energy = 5538.5417 kcal/mol (5530.6173 without restraints) Performing minimization step: 2986. Total energy = 5537.1621 kcal/mol (5529.2395 without restraints) Performing minimization step: 2987. Total energy = 5535.7840 kcal/mol (5527.8632 without restraints) Performing minimization step: 2988. Total energy = 5534.4070 kcal/mol (5526.4881 without restraints) Performing minimization step: 2989. Total energy = 5533.0317 kcal/mol (5525.1145 without restraints) Performing minimization step: 2990. Total energy = 5531.6575 kcal/mol (5523.7422 without restraints) Performing minimization step: 2991. Total energy = 5530.2847 kcal/mol (5522.3712 without restraints) Performing minimization step: 2992. Total energy = 5528.9135 kcal/mol (5521.0018 without restraints) Performing minimization step: 2993. Total energy = 5527.5434 kcal/mol (5519.6336 without restraints) Performing minimization step: 2994. Total energy = 5526.1748 kcal/mol (5518.2667 without restraints) Performing minimization step: 2995. Total energy = 5524.8074 kcal/mol (5516.9012 without restraints) Performing minimization step: 2996. Total energy = 5523.4415 kcal/mol (5515.5372 without restraints) Performing minimization step: 2997. Total energy = 5522.0771 kcal/mol (5514.1746 without restraints) Performing minimization step: 2998. Total energy = 5520.7142 kcal/mol (5512.8135 without restraints) Performing minimization step: 2999. Total energy = 5519.3524 kcal/mol (5511.4535 without restraints) Performing minimization step: 3000. Total energy = 5517.9921 kcal/mol (5510.0950 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 5516.6330 kcal/mol (5508.7375 without restraints) Performing minimization step: 3002. Total energy = 5515.2752 kcal/mol (5507.3817 without restraints) Performing minimization step: 3003. Total energy = 5513.9193 kcal/mol (5506.0277 without restraints) Performing minimization step: 3004. Total energy = 5512.5645 kcal/mol (5504.6746 without restraints) Performing minimization step: 3005. Total energy = 5511.2109 kcal/mol (5503.3229 without restraints) Performing minimization step: 3006. Total energy = 5509.8583 kcal/mol (5501.9720 without restraints) Performing minimization step: 3007. Total energy = 5508.5074 kcal/mol (5500.6230 without restraints) Performing minimization step: 3008. Total energy = 5507.1579 kcal/mol (5499.2753 without restraints) Performing minimization step: 3009. Total energy = 5505.8102 kcal/mol (5497.9295 without restraints) Performing minimization step: 3010. Total energy = 5504.4635 kcal/mol (5496.5845 without restraints) Performing minimization step: 3011. Total energy = 5503.1183 kcal/mol (5495.2412 without restraints) Performing minimization step: 3012. Total energy = 5501.7744 kcal/mol (5493.8991 without restraints) Performing minimization step: 3013. Total energy = 5500.4317 kcal/mol (5492.5582 without restraints) Performing minimization step: 3014. Total energy = 5499.0903 kcal/mol (5491.2187 without restraints) Performing minimization step: 3015. Total energy = 5497.7511 kcal/mol (5489.8813 without restraints) Performing minimization step: 3016. Total energy = 5496.4123 kcal/mol (5488.5442 without restraints) Performing minimization step: 3017. Total energy = 5495.0750 kcal/mol (5487.2087 without restraints) Performing minimization step: 3018. Total energy = 5493.7389 kcal/mol (5485.8744 without restraints) Performing minimization step: 3019. Total energy = 5492.4042 kcal/mol (5484.5416 without restraints) Performing minimization step: 3020. Total energy = 5491.0708 kcal/mol (5483.2100 without restraints) Performing minimization step: 3021. Total energy = 5489.7391 kcal/mol (5481.8801 without restraints) Performing minimization step: 3022. Total energy = 5488.4086 kcal/mol (5480.5515 without restraints) Performing minimization step: 3023. Total energy = 5487.0793 kcal/mol (5479.2240 without restraints) Performing minimization step: 3024. Total energy = 5485.7513 kcal/mol (5477.8978 without restraints) Performing minimization step: 3025. Total energy = 5484.4247 kcal/mol (5476.5729 without restraints) Performing minimization step: 3026. Total energy = 5483.0993 kcal/mol (5475.2494 without restraints) Performing minimization step: 3027. Total energy = 5481.7748 kcal/mol (5473.9267 without restraints) Performing minimization step: 3028. Total energy = 5480.4519 kcal/mol (5472.6057 without restraints) Performing minimization step: 3029. Total energy = 5479.1306 kcal/mol (5471.2861 without restraints) Performing minimization step: 3030. Total energy = 5477.8106 kcal/mol (5469.9680 without restraints) Performing minimization step: 3031. Total energy = 5476.4919 kcal/mol (5468.6511 without restraints) Performing minimization step: 3032. Total energy = 5475.1746 kcal/mol (5467.3355 without restraints) Performing minimization step: 3033. Total energy = 5473.8587 kcal/mol (5466.0215 without restraints) Performing minimization step: 3034. Total energy = 5472.5439 kcal/mol (5464.7085 without restraints) Performing minimization step: 3035. Total energy = 5471.2305 kcal/mol (5463.3969 without restraints) Performing minimization step: 3036. Total energy = 5469.9184 kcal/mol (5462.0866 without restraints) Performing minimization step: 3037. Total energy = 5468.6076 kcal/mol (5460.7779 without restraints) Performing minimization step: 3038. Total energy = 5467.2986 kcal/mol (5459.4704 without restraints) Performing minimization step: 3039. Total energy = 5465.9906 kcal/mol (5458.1643 without restraints) Performing minimization step: 3040. Total energy = 5464.6838 kcal/mol (5456.8593 without restraints) Performing minimization step: 3041. Total energy = 5463.3784 kcal/mol (5455.5558 without restraints) Performing minimization step: 3042. Total energy = 5462.0745 kcal/mol (5454.2536 without restraints) Performing minimization step: 3043. Total energy = 5460.7715 kcal/mol (5452.9524 without restraints) Performing minimization step: 3044. Total energy = 5459.4700 kcal/mol (5451.6527 without restraints) Performing minimization step: 3045. Total energy = 5458.1699 kcal/mol (5450.3545 without restraints) Performing minimization step: 3046. Total energy = 5456.8711 kcal/mol (5449.0576 without restraints) Performing minimization step: 3047. Total energy = 5455.5734 kcal/mol (5447.7615 without restraints) Performing minimization step: 3048. Total energy = 5454.2768 kcal/mol (5446.4668 without restraints) Performing minimization step: 3049. Total energy = 5452.9821 kcal/mol (5445.1739 without restraints) Performing minimization step: 3050. Total energy = 5451.6886 kcal/mol (5443.8824 without restraints) Performing minimization step: 3051. Total energy = 5450.3962 kcal/mol (5442.5916 without restraints) Performing minimization step: 3052. Total energy = 5449.1048 kcal/mol (5441.3021 without restraints) Performing minimization step: 3053. Total energy = 5447.8151 kcal/mol (5440.0141 without restraints) Performing minimization step: 3054. Total energy = 5446.5263 kcal/mol (5438.7271 without restraints) Performing minimization step: 3055. Total energy = 5445.2389 kcal/mol (5437.4415 without restraints) Performing minimization step: 3056. Total energy = 5443.9528 kcal/mol (5436.1574 without restraints) Performing minimization step: 3057. Total energy = 5442.6677 kcal/mol (5434.8740 without restraints) Performing minimization step: 3058. Total energy = 5441.3841 kcal/mol (5433.5921 without restraints) Performing minimization step: 3059. Total energy = 5440.1019 kcal/mol (5432.3120 without restraints) Performing minimization step: 3060. Total energy = 5438.8210 kcal/mol (5431.0327 without restraints) Performing minimization step: 3061. Total energy = 5437.5411 kcal/mol (5429.7546 without restraints) Performing minimization step: 3062. Total energy = 5436.2627 kcal/mol (5428.4780 without restraints) Performing minimization step: 3063. Total energy = 5434.9854 kcal/mol (5427.2025 without restraints) Performing minimization step: 3064. Total energy = 5433.7095 kcal/mol (5425.9285 without restraints) Performing minimization step: 3065. Total energy = 5432.4348 kcal/mol (5424.6557 without restraints) Performing minimization step: 3066. Total energy = 5431.1618 kcal/mol (5423.3844 without restraints) Performing minimization step: 3067. Total energy = 5429.8895 kcal/mol (5422.1139 without restraints) Performing minimization step: 3068. Total energy = 5428.6188 kcal/mol (5420.8450 without restraints) Performing minimization step: 3069. Total energy = 5427.3490 kcal/mol (5419.5770 without restraints) Performing minimization step: 3070. Total energy = 5426.0803 kcal/mol (5418.3101 without restraints) Performing minimization step: 3071. Total energy = 5424.8133 kcal/mol (5417.0448 without restraints) Performing minimization step: 3072. Total energy = 5423.5473 kcal/mol (5415.7806 without restraints) Performing minimization step: 3073. Total energy = 5422.2825 kcal/mol (5414.5176 without restraints) Performing minimization step: 3074. Total energy = 5421.0192 kcal/mol (5413.2562 without restraints) Performing minimization step: 3075. Total energy = 5419.7569 kcal/mol (5411.9957 without restraints) Performing minimization step: 3076. Total energy = 5418.4959 kcal/mol (5410.7364 without restraints) Performing minimization step: 3077. Total energy = 5417.2358 kcal/mol (5409.4782 without restraints) Performing minimization step: 3078. Total energy = 5415.9772 kcal/mol (5408.2214 without restraints) Performing minimization step: 3079. Total energy = 5414.7203 kcal/mol (5406.9666 without restraints) Performing minimization step: 3080. Total energy = 5413.4645 kcal/mol (5405.7123 without restraints) Performing minimization step: 3081. Total energy = 5412.2096 kcal/mol (5404.4592 without restraints) Performing minimization step: 3082. Total energy = 5410.9559 kcal/mol (5403.2074 without restraints) Performing minimization step: 3083. Total energy = 5409.7034 kcal/mol (5401.9567 without restraints) Performing minimization step: 3084. Total energy = 5408.4522 kcal/mol (5400.7073 without restraints) Performing minimization step: 3085. Total energy = 5407.2025 kcal/mol (5399.4593 without restraints) Performing minimization step: 3086. Total energy = 5405.9537 kcal/mol (5398.2122 without restraints) Performing minimization step: 3087. Total energy = 5404.7064 kcal/mol (5396.9668 without restraints) Performing minimization step: 3088. Total energy = 5403.4601 kcal/mol (5395.7223 without restraints) Performing minimization step: 3089. Total energy = 5402.2151 kcal/mol (5394.4792 without restraints) Performing minimization step: 3090. Total energy = 5400.9713 kcal/mol (5393.2371 without restraints) Performing minimization step: 3091. Total energy = 5399.7286 kcal/mol (5391.9962 without restraints) Performing minimization step: 3092. Total energy = 5398.4874 kcal/mol (5390.7569 without restraints) Performing minimization step: 3093. Total energy = 5397.2472 kcal/mol (5389.5185 without restraints) Performing minimization step: 3094. Total energy = 5396.0082 kcal/mol (5388.2812 without restraints) Performing minimization step: 3095. Total energy = 5394.7704 kcal/mol (5387.0452 without restraints) Performing minimization step: 3096. Total energy = 5393.5337 kcal/mol (5385.8105 without restraints) Performing minimization step: 3097. Total energy = 5392.2986 kcal/mol (5384.5770 without restraints) Performing minimization step: 3098. Total energy = 5391.0644 kcal/mol (5383.3448 without restraints) Performing minimization step: 3099. Total energy = 5389.8316 kcal/mol (5382.1136 without restraints) Performing minimization step: 3100. Total energy = 5388.5999 kcal/mol (5380.8837 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 5387.3693 kcal/mol (5379.6549 without restraints) Performing minimization step: 3102. Total energy = 5386.1399 kcal/mol (5378.4274 without restraints) Performing minimization step: 3103. Total energy = 5384.9118 kcal/mol (5377.2010 without restraints) Performing minimization step: 3104. Total energy = 5383.6848 kcal/mol (5375.9760 without restraints) Performing minimization step: 3105. Total energy = 5382.4590 kcal/mol (5374.7517 without restraints) Performing minimization step: 3106. Total energy = 5381.2339 kcal/mol (5373.5285 without restraints) Performing minimization step: 3107. Total energy = 5380.0107 kcal/mol (5372.3071 without restraints) Performing minimization step: 3108. Total energy = 5378.7888 kcal/mol (5371.0870 without restraints) Performing minimization step: 3109. Total energy = 5377.5675 kcal/mol (5369.8675 without restraints) Performing minimization step: 3110. Total energy = 5376.3477 kcal/mol (5368.6497 without restraints) Performing minimization step: 3111. Total energy = 5375.1298 kcal/mol (5367.4335 without restraints) Performing minimization step: 3112. Total energy = 5373.9122 kcal/mol (5366.2176 without restraints) Performing minimization step: 3113. Total energy = 5372.6960 kcal/mol (5365.0032 without restraints) Performing minimization step: 3114. Total energy = 5371.4808 kcal/mol (5363.7897 without restraints) Performing minimization step: 3115. Total energy = 5370.2668 kcal/mol (5362.5777 without restraints) Performing minimization step: 3116. Total energy = 5369.0538 kcal/mol (5361.3664 without restraints) Performing minimization step: 3117. Total energy = 5367.8422 kcal/mol (5360.1568 without restraints) Performing minimization step: 3118. Total energy = 5366.6315 kcal/mol (5358.9477 without restraints) Performing minimization step: 3119. Total energy = 5365.4218 kcal/mol (5357.7397 without restraints) Performing minimization step: 3120. Total energy = 5364.2140 kcal/mol (5356.5337 without restraints) Performing minimization step: 3121. Total energy = 5363.0071 kcal/mol (5355.3288 without restraints) Performing minimization step: 3122. Total energy = 5361.8011 kcal/mol (5354.1245 without restraints) Performing minimization step: 3123. Total energy = 5360.5964 kcal/mol (5352.9215 without restraints) Performing minimization step: 3124. Total energy = 5359.3927 kcal/mol (5351.7196 without restraints) Performing minimization step: 3125. Total energy = 5358.1900 kcal/mol (5350.5185 without restraints) Performing minimization step: 3126. Total energy = 5356.9882 kcal/mol (5349.3188 without restraints) Performing minimization step: 3127. Total energy = 5355.7882 kcal/mol (5348.1205 without restraints) Performing minimization step: 3128. Total energy = 5354.5894 kcal/mol (5346.9234 without restraints) Performing minimization step: 3129. Total energy = 5353.3916 kcal/mol (5345.7274 without restraints) Performing minimization step: 3130. Total energy = 5352.1947 kcal/mol (5344.5324 without restraints) Performing minimization step: 3131. Total energy = 5350.9996 kcal/mol (5343.3390 without restraints) Performing minimization step: 3132. Total energy = 5349.8049 kcal/mol (5342.1461 without restraints) Performing minimization step: 3133. Total energy = 5348.6112 kcal/mol (5340.9542 without restraints) Performing minimization step: 3134. Total energy = 5347.4188 kcal/mol (5339.7636 without restraints) Performing minimization step: 3135. Total energy = 5346.2280 kcal/mol (5338.5745 without restraints) Performing minimization step: 3136. Total energy = 5345.0381 kcal/mol (5337.3865 without restraints) Performing minimization step: 3137. Total energy = 5343.8491 kcal/mol (5336.1993 without restraints) Performing minimization step: 3138. Total energy = 5342.6612 kcal/mol (5335.0132 without restraints) Performing minimization step: 3139. Total energy = 5341.4745 kcal/mol (5333.8282 without restraints) Performing minimization step: 3140. Total energy = 5340.2888 kcal/mol (5332.6443 without restraints) Performing minimization step: 3141. Total energy = 5339.1044 kcal/mol (5331.4617 without restraints) Performing minimization step: 3142. Total energy = 5337.9212 kcal/mol (5330.2803 without restraints) Performing minimization step: 3143. Total energy = 5336.7391 kcal/mol (5329.1000 without restraints) Performing minimization step: 3144. Total energy = 5335.5579 kcal/mol (5327.9206 without restraints) Performing minimization step: 3145. Total energy = 5334.3777 kcal/mol (5326.7420 without restraints) Performing minimization step: 3146. Total energy = 5333.1988 kcal/mol (5325.5650 without restraints) Performing minimization step: 3147. Total energy = 5332.0208 kcal/mol (5324.3888 without restraints) Performing minimization step: 3148. Total energy = 5330.8441 kcal/mol (5323.2139 without restraints) Performing minimization step: 3149. Total energy = 5329.6685 kcal/mol (5322.0401 without restraints) Performing minimization step: 3150. Total energy = 5328.4939 kcal/mol (5320.8673 without restraints) Performing minimization step: 3151. Total energy = 5327.3204 kcal/mol (5319.6955 without restraints) Performing minimization step: 3152. Total energy = 5326.1481 kcal/mol (5318.5250 without restraints) Performing minimization step: 3153. Total energy = 5324.9770 kcal/mol (5317.3557 without restraints) Performing minimization step: 3154. Total energy = 5323.8067 kcal/mol (5316.1872 without restraints) Performing minimization step: 3155. Total energy = 5322.6379 kcal/mol (5315.0201 without restraints) Performing minimization step: 3156. Total energy = 5321.4699 kcal/mol (5313.8539 without restraints) Performing minimization step: 3157. Total energy = 5320.3032 kcal/mol (5312.6891 without restraints) Performing minimization step: 3158. Total energy = 5319.1372 kcal/mol (5311.5248 without restraints) Performing minimization step: 3159. Total energy = 5317.9727 kcal/mol (5310.3622 without restraints) Performing minimization step: 3160. Total energy = 5316.8091 kcal/mol (5309.2003 without restraints) Performing minimization step: 3161. Total energy = 5315.6465 kcal/mol (5308.0395 without restraints) Performing minimization step: 3162. Total energy = 5314.4848 kcal/mol (5306.8794 without restraints) Performing minimization step: 3163. Total energy = 5313.3240 kcal/mol (5305.7205 without restraints) Performing minimization step: 3164. Total energy = 5312.1648 kcal/mol (5304.5631 without restraints) Performing minimization step: 3165. Total energy = 5311.0069 kcal/mol (5303.4069 without restraints) Performing minimization step: 3166. Total energy = 5309.8500 kcal/mol (5302.2519 without restraints) Performing minimization step: 3167. Total energy = 5308.6943 kcal/mol (5301.0978 without restraints) Performing minimization step: 3168. Total energy = 5307.5392 kcal/mol (5299.9447 without restraints) Performing minimization step: 3169. Total energy = 5306.3851 kcal/mol (5298.7923 without restraints) Performing minimization step: 3170. Total energy = 5305.2323 kcal/mol (5297.6412 without restraints) Performing minimization step: 3171. Total energy = 5304.0803 kcal/mol (5296.4910 without restraints) Performing minimization step: 3172. Total energy = 5302.9298 kcal/mol (5295.3423 without restraints) Performing minimization step: 3173. Total energy = 5301.7799 kcal/mol (5294.1941 without restraints) Performing minimization step: 3174. Total energy = 5300.6310 kcal/mol (5293.0470 without restraints) Performing minimization step: 3175. Total energy = 5299.4833 kcal/mol (5291.9010 without restraints) Performing minimization step: 3176. Total energy = 5298.3365 kcal/mol (5290.7561 without restraints) Performing minimization step: 3177. Total energy = 5297.1912 kcal/mol (5289.6126 without restraints) Performing minimization step: 3178. Total energy = 5296.0464 kcal/mol (5288.4695 without restraints) Performing minimization step: 3179. Total energy = 5294.9028 kcal/mol (5287.3276 without restraints) Performing minimization step: 3180. Total energy = 5293.7603 kcal/mol (5286.1869 without restraints) Performing minimization step: 3181. Total energy = 5292.6188 kcal/mol (5285.0473 without restraints) Performing minimization step: 3182. Total energy = 5291.4786 kcal/mol (5283.9085 without restraints) Performing minimization step: 3183. Total energy = 5290.3391 kcal/mol (5282.7710 without restraints) Performing minimization step: 3184. Total energy = 5289.2010 kcal/mol (5281.6347 without restraints) Performing minimization step: 3185. Total energy = 5288.0639 kcal/mol (5280.4996 without restraints) Performing minimization step: 3186. Total energy = 5286.9277 kcal/mol (5279.3650 without restraints) Performing minimization step: 3187. Total energy = 5285.7923 kcal/mol (5278.2313 without restraints) Performing minimization step: 3188. Total energy = 5284.6583 kcal/mol (5277.0993 without restraints) Performing minimization step: 3189. Total energy = 5283.5251 kcal/mol (5275.9677 without restraints) Performing minimization step: 3190. Total energy = 5282.3928 kcal/mol (5274.8371 without restraints) Performing minimization step: 3191. Total energy = 5281.2617 kcal/mol (5273.7078 without restraints) Performing minimization step: 3192. Total energy = 5280.1316 kcal/mol (5272.5795 without restraints) Performing minimization step: 3193. Total energy = 5279.0024 kcal/mol (5271.4520 without restraints) Performing minimization step: 3194. Total energy = 5277.8741 kcal/mol (5270.3255 without restraints) Performing minimization step: 3195. Total energy = 5276.7471 kcal/mol (5269.2003 without restraints) Performing minimization step: 3196. Total energy = 5275.6210 kcal/mol (5268.0760 without restraints) Performing minimization step: 3197. Total energy = 5274.4964 kcal/mol (5266.9530 without restraints) Performing minimization step: 3198. Total energy = 5273.3721 kcal/mol (5265.8306 without restraints) Performing minimization step: 3199. Total energy = 5272.2493 kcal/mol (5264.7095 without restraints) Performing minimization step: 3200. Total energy = 5271.1274 kcal/mol (5263.5895 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 5270.0063 kcal/mol (5262.4700 without restraints) Performing minimization step: 3202. Total energy = 5268.8861 kcal/mol (5261.3516 without restraints) Performing minimization step: 3203. Total energy = 5267.7675 kcal/mol (5260.2347 without restraints) Performing minimization step: 3204. Total energy = 5266.6491 kcal/mol (5259.1181 without restraints) Performing minimization step: 3205. Total energy = 5265.5320 kcal/mol (5258.0029 without restraints) Performing minimization step: 3206. Total energy = 5264.4159 kcal/mol (5256.8884 without restraints) Performing minimization step: 3207. Total energy = 5263.3006 kcal/mol (5255.7749 without restraints) Performing minimization step: 3208. Total energy = 5262.1863 kcal/mol (5254.6624 without restraints) Performing minimization step: 3209. Total energy = 5261.0728 kcal/mol (5253.5505 without restraints) Performing minimization step: 3210. Total energy = 5259.9605 kcal/mol (5252.4400 without restraints) Performing minimization step: 3211. Total energy = 5258.8496 kcal/mol (5251.3309 without restraints) Performing minimization step: 3212. Total energy = 5257.7395 kcal/mol (5250.2226 without restraints) Performing minimization step: 3213. Total energy = 5256.6303 kcal/mol (5249.1151 without restraints) Performing minimization step: 3214. Total energy = 5255.5225 kcal/mol (5248.0090 without restraints) Performing minimization step: 3215. Total energy = 5254.4151 kcal/mol (5246.9034 without restraints) Performing minimization step: 3216. Total energy = 5253.3087 kcal/mol (5245.7987 without restraints) Performing minimization step: 3217. Total energy = 5252.2031 kcal/mol (5244.6950 without restraints) Performing minimization step: 3218. Total energy = 5251.0987 kcal/mol (5243.5923 without restraints) Performing minimization step: 3219. Total energy = 5249.9953 kcal/mol (5242.4908 without restraints) Performing minimization step: 3220. Total energy = 5248.8930 kcal/mol (5241.3902 without restraints) Performing minimization step: 3221. Total energy = 5247.7919 kcal/mol (5240.2907 without restraints) Performing minimization step: 3222. Total energy = 5246.6912 kcal/mol (5239.1918 without restraints) Performing minimization step: 3223. Total energy = 5245.5916 kcal/mol (5238.0939 without restraints) Performing minimization step: 3224. Total energy = 5244.4926 kcal/mol (5236.9967 without restraints) Performing minimization step: 3225. Total energy = 5243.3950 kcal/mol (5235.9010 without restraints) Performing minimization step: 3226. Total energy = 5242.2987 kcal/mol (5234.8064 without restraints) Performing minimization step: 3227. Total energy = 5241.2032 kcal/mol (5233.7126 without restraints) Performing minimization step: 3228. Total energy = 5240.1085 kcal/mol (5232.6196 without restraints) Performing minimization step: 3229. Total energy = 5239.0148 kcal/mol (5231.5276 without restraints) Performing minimization step: 3230. Total energy = 5237.9221 kcal/mol (5230.4369 without restraints) Performing minimization step: 3231. Total energy = 5236.8302 kcal/mol (5229.3465 without restraints) Performing minimization step: 3232. Total energy = 5235.7393 kcal/mol (5228.2574 without restraints) Performing minimization step: 3233. Total energy = 5234.6501 kcal/mol (5227.1701 without restraints) Performing minimization step: 3234. Total energy = 5233.5610 kcal/mol (5226.0825 without restraints) Performing minimization step: 3235. Total energy = 5232.4727 kcal/mol (5224.9960 without restraints) Performing minimization step: 3236. Total energy = 5231.3853 kcal/mol (5223.9104 without restraints) Performing minimization step: 3237. Total energy = 5230.2988 kcal/mol (5222.8257 without restraints) Performing minimization step: 3238. Total energy = 5229.2133 kcal/mol (5221.7419 without restraints) Performing minimization step: 3239. Total energy = 5228.1287 kcal/mol (5220.6591 without restraints) Performing minimization step: 3240. Total energy = 5227.0451 kcal/mol (5219.5771 without restraints) Performing minimization step: 3241. Total energy = 5225.9623 kcal/mol (5218.4961 without restraints) Performing minimization step: 3242. Total energy = 5224.8805 kcal/mol (5217.4160 without restraints) Performing minimization step: 3243. Total energy = 5223.7999 kcal/mol (5216.3374 without restraints) Performing minimization step: 3244. Total energy = 5222.7203 kcal/mol (5215.2593 without restraints) Performing minimization step: 3245. Total energy = 5221.6412 kcal/mol (5214.1820 without restraints) Performing minimization step: 3246. Total energy = 5220.5633 kcal/mol (5213.1058 without restraints) Performing minimization step: 3247. Total energy = 5219.4857 kcal/mol (5212.0300 without restraints) Performing minimization step: 3248. Total energy = 5218.4096 kcal/mol (5210.9556 without restraints) Performing minimization step: 3249. Total energy = 5217.3344 kcal/mol (5209.8822 without restraints) Performing minimization step: 3250. Total energy = 5216.2598 kcal/mol (5208.8093 without restraints) Performing minimization step: 3251. Total energy = 5215.1863 kcal/mol (5207.7375 without restraints) Performing minimization step: 3252. Total energy = 5214.1135 kcal/mol (5206.6663 without restraints) Performing minimization step: 3253. Total energy = 5213.0416 kcal/mol (5205.5963 without restraints) Performing minimization step: 3254. Total energy = 5211.9708 kcal/mol (5204.5272 without restraints) Performing minimization step: 3255. Total energy = 5210.9009 kcal/mol (5203.4590 without restraints) Performing minimization step: 3256. Total energy = 5209.8320 kcal/mol (5202.3919 without restraints) Performing minimization step: 3257. Total energy = 5208.7642 kcal/mol (5201.3259 without restraints) Performing minimization step: 3258. Total energy = 5207.6970 kcal/mol (5200.2603 without restraints) Performing minimization step: 3259. Total energy = 5206.6308 kcal/mol (5199.1959 without restraints) Performing minimization step: 3260. Total energy = 5205.5656 kcal/mol (5198.1325 without restraints) Performing minimization step: 3261. Total energy = 5204.5013 kcal/mol (5197.0699 without restraints) Performing minimization step: 3262. Total energy = 5203.4377 kcal/mol (5196.0080 without restraints) Performing minimization step: 3263. Total energy = 5202.3750 kcal/mol (5194.9470 without restraints) Performing minimization step: 3264. Total energy = 5201.3133 kcal/mol (5193.8870 without restraints) Performing minimization step: 3265. Total energy = 5200.2527 kcal/mol (5192.8284 without restraints) Performing minimization step: 3266. Total energy = 5199.1933 kcal/mol (5191.7705 without restraints) Performing minimization step: 3267. Total energy = 5198.1341 kcal/mol (5190.7130 without restraints) Performing minimization step: 3268. Total energy = 5197.0757 kcal/mol (5189.6564 without restraints) Performing minimization step: 3269. Total energy = 5196.0186 kcal/mol (5188.6009 without restraints) Performing minimization step: 3270. Total energy = 5194.9621 kcal/mol (5187.5463 without restraints) Performing minimization step: 3271. Total energy = 5193.9065 kcal/mol (5186.4923 without restraints) Performing minimization step: 3272. Total energy = 5192.8523 kcal/mol (5185.4400 without restraints) Performing minimization step: 3273. Total energy = 5191.7986 kcal/mol (5184.3879 without restraints) Performing minimization step: 3274. Total energy = 5190.7457 kcal/mol (5183.3367 without restraints) Performing minimization step: 3275. Total energy = 5189.6933 kcal/mol (5182.2861 without restraints) Performing minimization step: 3276. Total energy = 5188.6418 kcal/mol (5181.2363 without restraints) Performing minimization step: 3277. Total energy = 5187.5913 kcal/mol (5180.1875 without restraints) Performing minimization step: 3278. Total energy = 5186.5417 kcal/mol (5179.1396 without restraints) Performing minimization step: 3279. Total energy = 5185.4931 kcal/mol (5178.0927 without restraints) Performing minimization step: 3280. Total energy = 5184.4453 kcal/mol (5177.0468 without restraints) Performing minimization step: 3281. Total energy = 5183.3987 kcal/mol (5176.0018 without restraints) Performing minimization step: 3282. Total energy = 5182.3525 kcal/mol (5174.9573 without restraints) Performing minimization step: 3283. Total energy = 5181.3071 kcal/mol (5173.9136 without restraints) Performing minimization step: 3284. Total energy = 5180.2630 kcal/mol (5172.8712 without restraints) Performing minimization step: 3285. Total energy = 5179.2195 kcal/mol (5171.8296 without restraints) Performing minimization step: 3286. Total energy = 5178.1768 kcal/mol (5170.7885 without restraints) Performing minimization step: 3287. Total energy = 5177.1349 kcal/mol (5169.7483 without restraints) Performing minimization step: 3288. Total energy = 5176.0939 kcal/mol (5168.7090 without restraints) Performing minimization step: 3289. Total energy = 5175.0537 kcal/mol (5167.6706 without restraints) Performing minimization step: 3290. Total energy = 5174.0144 kcal/mol (5166.6330 without restraints) Performing minimization step: 3291. Total energy = 5172.9759 kcal/mol (5165.5962 without restraints) Performing minimization step: 3292. Total energy = 5171.9383 kcal/mol (5164.5603 without restraints) Performing minimization step: 3293. Total energy = 5170.9018 kcal/mol (5163.5255 without restraints) Performing minimization step: 3294. Total energy = 5169.8660 kcal/mol (5162.4915 without restraints) Performing minimization step: 3295. Total energy = 5168.8308 kcal/mol (5161.4579 without restraints) Performing minimization step: 3296. Total energy = 5167.7968 kcal/mol (5160.4257 without restraints) Performing minimization step: 3297. Total energy = 5166.7636 kcal/mol (5159.3941 without restraints) Performing minimization step: 3298. Total energy = 5165.7311 kcal/mol (5158.3634 without restraints) Performing minimization step: 3299. Total energy = 5164.6993 kcal/mol (5157.3333 without restraints) Performing minimization step: 3300. Total energy = 5163.6684 kcal/mol (5156.3041 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 5162.6383 kcal/mol (5155.2757 without restraints) Performing minimization step: 3302. Total energy = 5161.6088 kcal/mol (5154.2479 without restraints) Performing minimization step: 3303. Total energy = 5160.5803 kcal/mol (5153.2211 without restraints) Performing minimization step: 3304. Total energy = 5159.5526 kcal/mol (5152.1952 without restraints) Performing minimization step: 3305. Total energy = 5158.5260 kcal/mol (5151.1703 without restraints) Performing minimization step: 3306. Total energy = 5157.5009 kcal/mol (5150.1469 without restraints) Performing minimization step: 3307. Total energy = 5156.4758 kcal/mol (5149.1236 without restraints) Performing minimization step: 3308. Total energy = 5155.4515 kcal/mol (5148.1009 without restraints) Performing minimization step: 3309. Total energy = 5154.4280 kcal/mol (5147.0791 without restraints) Performing minimization step: 3310. Total energy = 5153.4057 kcal/mol (5146.0584 without restraints) Performing minimization step: 3311. Total energy = 5152.3837 kcal/mol (5145.0382 without restraints) Performing minimization step: 3312. Total energy = 5151.3628 kcal/mol (5144.0191 without restraints) Performing minimization step: 3313. Total energy = 5150.3428 kcal/mol (5143.0009 without restraints) Performing minimization step: 3314. Total energy = 5149.3236 kcal/mol (5141.9832 without restraints) Performing minimization step: 3315. Total energy = 5148.3049 kcal/mol (5140.9662 without restraints) Performing minimization step: 3316. Total energy = 5147.2872 kcal/mol (5139.9502 without restraints) Performing minimization step: 3317. Total energy = 5146.2702 kcal/mol (5138.9349 without restraints) Performing minimization step: 3318. Total energy = 5145.2536 kcal/mol (5137.9200 without restraints) Performing minimization step: 3319. Total energy = 5144.2380 kcal/mol (5136.9062 without restraints) Performing minimization step: 3320. Total energy = 5143.2234 kcal/mol (5135.8932 without restraints) Performing minimization step: 3321. Total energy = 5142.2095 kcal/mol (5134.8811 without restraints) Performing minimization step: 3322. Total energy = 5141.1966 kcal/mol (5133.8700 without restraints) Performing minimization step: 3323. Total energy = 5140.1845 kcal/mol (5132.8594 without restraints) Performing minimization step: 3324. Total energy = 5139.1740 kcal/mol (5131.8506 without restraints) Performing minimization step: 3325. Total energy = 5138.1633 kcal/mol (5130.8417 without restraints) Performing minimization step: 3326. Total energy = 5137.1540 kcal/mol (5129.8342 without restraints) Performing minimization step: 3327. Total energy = 5136.1453 kcal/mol (5128.8271 without restraints) Performing minimization step: 3328. Total energy = 5135.1372 kcal/mol (5127.8206 without restraints) Performing minimization step: 3329. Total energy = 5134.1297 kcal/mol (5126.8149 without restraints) Performing minimization step: 3330. Total energy = 5133.1231 kcal/mol (5125.8100 without restraints) Performing minimization step: 3331. Total energy = 5132.1178 kcal/mol (5124.8063 without restraints) Performing minimization step: 3332. Total energy = 5131.1127 kcal/mol (5123.8029 without restraints) Performing minimization step: 3333. Total energy = 5130.1086 kcal/mol (5122.8005 without restraints) Performing minimization step: 3334. Total energy = 5129.1051 kcal/mol (5121.7987 without restraints) Performing minimization step: 3335. Total energy = 5128.1024 kcal/mol (5120.7976 without restraints) Performing minimization step: 3336. Total energy = 5127.1004 kcal/mol (5119.7974 without restraints) Performing minimization step: 3337. Total energy = 5126.0995 kcal/mol (5118.7982 without restraints) Performing minimization step: 3338. Total energy = 5125.0992 kcal/mol (5117.7996 without restraints) Performing minimization step: 3339. Total energy = 5124.0994 kcal/mol (5116.8014 without restraints) Performing minimization step: 3340. Total energy = 5123.1005 kcal/mol (5115.8043 without restraints) Performing minimization step: 3341. Total energy = 5122.1027 kcal/mol (5114.8081 without restraints) Performing minimization step: 3342. Total energy = 5121.1054 kcal/mol (5113.8125 without restraints) Performing minimization step: 3343. Total energy = 5120.1095 kcal/mol (5112.8183 without restraints) Performing minimization step: 3344. Total energy = 5119.1138 kcal/mol (5111.8243 without restraints) Performing minimization step: 3345. Total energy = 5118.1188 kcal/mol (5110.8310 without restraints) Performing minimization step: 3346. Total energy = 5117.1246 kcal/mol (5109.8385 without restraints) Performing minimization step: 3347. Total energy = 5116.1311 kcal/mol (5108.8465 without restraints) Performing minimization step: 3348. Total energy = 5115.1384 kcal/mol (5107.8557 without restraints) Performing minimization step: 3349. Total energy = 5114.1466 kcal/mol (5106.8655 without restraints) Performing minimization step: 3350. Total energy = 5113.1555 kcal/mol (5105.8760 without restraints) Performing minimization step: 3351. Total energy = 5112.1654 kcal/mol (5104.8878 without restraints) Performing minimization step: 3352. Total energy = 5111.1758 kcal/mol (5103.8997 without restraints) Performing minimization step: 3353. Total energy = 5110.1871 kcal/mol (5102.9127 without restraints) Performing minimization step: 3354. Total energy = 5109.1992 kcal/mol (5101.9266 without restraints) Performing minimization step: 3355. Total energy = 5108.2118 kcal/mol (5100.9407 without restraints) Performing minimization step: 3356. Total energy = 5107.2252 kcal/mol (5099.9559 without restraints) Performing minimization step: 3357. Total energy = 5106.2397 kcal/mol (5098.9721 without restraints) Performing minimization step: 3358. Total energy = 5105.2547 kcal/mol (5097.9888 without restraints) Performing minimization step: 3359. Total energy = 5104.2704 kcal/mol (5097.0061 without restraints) Performing minimization step: 3360. Total energy = 5103.2871 kcal/mol (5096.0246 without restraints) Performing minimization step: 3361. Total energy = 5102.3044 kcal/mol (5095.0434 without restraints) Performing minimization step: 3362. Total energy = 5101.3220 kcal/mol (5094.0628 without restraints) Performing minimization step: 3363. Total energy = 5100.3408 kcal/mol (5093.0834 without restraints) Performing minimization step: 3364. Total energy = 5099.3604 kcal/mol (5092.1045 without restraints) Performing minimization step: 3365. Total energy = 5098.3802 kcal/mol (5091.1259 without restraints) Performing minimization step: 3366. Total energy = 5097.4012 kcal/mol (5090.1489 without restraints) Performing minimization step: 3367. Total energy = 5096.4233 kcal/mol (5089.1725 without restraints) Performing minimization step: 3368. Total energy = 5095.4459 kcal/mol (5088.1967 without restraints) Performing minimization step: 3369. Total energy = 5094.4692 kcal/mol (5087.2218 without restraints) Performing minimization step: 3370. Total energy = 5093.4933 kcal/mol (5086.2475 without restraints) Performing minimization step: 3371. Total energy = 5092.5184 kcal/mol (5085.2743 without restraints) Performing minimization step: 3372. Total energy = 5091.5438 kcal/mol (5084.3014 without restraints) Performing minimization step: 3373. Total energy = 5090.5705 kcal/mol (5083.3297 without restraints) Performing minimization step: 3374. Total energy = 5089.5973 kcal/mol (5082.3582 without restraints) Performing minimization step: 3375. Total energy = 5088.6245 kcal/mol (5081.3871 without restraints) Performing minimization step: 3376. Total energy = 5087.6529 kcal/mol (5080.4171 without restraints) Performing minimization step: 3377. Total energy = 5086.6819 kcal/mol (5079.4478 without restraints) Performing minimization step: 3378. Total energy = 5085.7119 kcal/mol (5078.4795 without restraints) Performing minimization step: 3379. Total energy = 5084.7425 kcal/mol (5077.5117 without restraints) Performing minimization step: 3380. Total energy = 5083.7738 kcal/mol (5076.5448 without restraints) Performing minimization step: 3381. Total energy = 5082.8061 kcal/mol (5075.5787 without restraints) Performing minimization step: 3382. Total energy = 5081.8390 kcal/mol (5074.6132 without restraints) Performing minimization step: 3383. Total energy = 5080.8729 kcal/mol (5073.6489 without restraints) Performing minimization step: 3384. Total energy = 5079.9075 kcal/mol (5072.6851 without restraints) Performing minimization step: 3385. Total energy = 5078.9424 kcal/mol (5071.7217 without restraints) Performing minimization step: 3386. Total energy = 5077.9780 kcal/mol (5070.7589 without restraints) Performing minimization step: 3387. Total energy = 5077.0145 kcal/mol (5069.7971 without restraints) Performing minimization step: 3388. Total energy = 5076.0516 kcal/mol (5068.8358 without restraints) Performing minimization step: 3389. Total energy = 5075.0896 kcal/mol (5067.8755 without restraints) Performing minimization step: 3390. Total energy = 5074.1280 kcal/mol (5066.9155 without restraints) Performing minimization step: 3391. Total energy = 5073.1674 kcal/mol (5065.9566 without restraints) Performing minimization step: 3392. Total energy = 5072.2073 kcal/mol (5064.9983 without restraints) Performing minimization step: 3393. Total energy = 5071.2481 kcal/mol (5064.0405 without restraints) Performing minimization step: 3394. Total energy = 5070.2895 kcal/mol (5063.0838 without restraints) Performing minimization step: 3395. Total energy = 5069.3318 kcal/mol (5062.1277 without restraints) Performing minimization step: 3396. Total energy = 5068.3746 kcal/mol (5061.1721 without restraints) Performing minimization step: 3397. Total energy = 5067.4182 kcal/mol (5060.2174 without restraints) Performing minimization step: 3398. Total energy = 5066.4619 kcal/mol (5059.2627 without restraints) Performing minimization step: 3399. Total energy = 5065.5070 kcal/mol (5058.3095 without restraints) Performing minimization step: 3400. Total energy = 5064.5526 kcal/mol (5057.3567 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5063.5989 kcal/mol (5056.4048 without restraints) Performing minimization step: 3402. Total energy = 5062.6465 kcal/mol (5055.4539 without restraints) Performing minimization step: 3403. Total energy = 5061.6945 kcal/mol (5054.5037 without restraints) Performing minimization step: 3404. Total energy = 5060.7430 kcal/mol (5053.5538 without restraints) Performing minimization step: 3405. Total energy = 5059.7919 kcal/mol (5052.6043 without restraints) Performing minimization step: 3406. Total energy = 5058.8417 kcal/mol (5051.6557 without restraints) Performing minimization step: 3407. Total energy = 5057.8926 kcal/mol (5050.7084 without restraints) Performing minimization step: 3408. Total energy = 5056.9438 kcal/mol (5049.7612 without restraints) Performing minimization step: 3409. Total energy = 5055.9958 kcal/mol (5048.8148 without restraints) Performing minimization step: 3410. Total energy = 5055.0485 kcal/mol (5047.8693 without restraints) Performing minimization step: 3411. Total energy = 5054.1016 kcal/mol (5046.9239 without restraints) Performing minimization step: 3412. Total energy = 5053.1553 kcal/mol (5045.9793 without restraints) Performing minimization step: 3413. Total energy = 5052.2105 kcal/mol (5045.0361 without restraints) Performing minimization step: 3414. Total energy = 5051.2664 kcal/mol (5044.0937 without restraints) Performing minimization step: 3415. Total energy = 5050.3219 kcal/mol (5043.1508 without restraints) Performing minimization step: 3416. Total energy = 5049.3788 kcal/mol (5042.2094 without restraints) Performing minimization step: 3417. Total energy = 5048.4366 kcal/mol (5041.2690 without restraints) Performing minimization step: 3418. Total energy = 5047.4951 kcal/mol (5040.3291 without restraints) Performing minimization step: 3419. Total energy = 5046.5541 kcal/mol (5039.3896 without restraints) Performing minimization step: 3420. Total energy = 5045.6138 kcal/mol (5038.4510 without restraints) Performing minimization step: 3421. Total energy = 5044.6742 kcal/mol (5037.5131 without restraints) Performing minimization step: 3422. Total energy = 5043.7352 kcal/mol (5036.5756 without restraints) Performing minimization step: 3423. Total energy = 5042.7972 kcal/mol (5035.6394 without restraints) Performing minimization step: 3424. Total energy = 5041.8598 kcal/mol (5034.7037 without restraints) Performing minimization step: 3425. Total energy = 5040.9236 kcal/mol (5033.7692 without restraints) Performing minimization step: 3426. Total energy = 5039.9875 kcal/mol (5032.8345 without restraints) Performing minimization step: 3427. Total energy = 5039.0522 kcal/mol (5031.9010 without restraints) Performing minimization step: 3428. Total energy = 5038.1172 kcal/mol (5030.9674 without restraints) Performing minimization step: 3429. Total energy = 5037.1829 kcal/mol (5030.0349 without restraints) Performing minimization step: 3430. Total energy = 5036.2492 kcal/mol (5029.1028 without restraints) Performing minimization step: 3431. Total energy = 5035.3162 kcal/mol (5028.1714 without restraints) Performing minimization step: 3432. Total energy = 5034.3842 kcal/mol (5027.2411 without restraints) Performing minimization step: 3433. Total energy = 5033.4527 kcal/mol (5026.3113 without restraints) Performing minimization step: 3434. Total energy = 5032.5218 kcal/mol (5025.3819 without restraints) Performing minimization step: 3435. Total energy = 5031.5917 kcal/mol (5024.4535 without restraints) Performing minimization step: 3436. Total energy = 5030.6621 kcal/mol (5023.5256 without restraints) Performing minimization step: 3437. Total energy = 5029.7334 kcal/mol (5022.5985 without restraints) Performing minimization step: 3438. Total energy = 5028.8052 kcal/mol (5021.6719 without restraints) Performing minimization step: 3439. Total energy = 5027.8776 kcal/mol (5020.7460 without restraints) Performing minimization step: 3440. Total energy = 5026.9508 kcal/mol (5019.8209 without restraints) Performing minimization step: 3441. Total energy = 5026.0246 kcal/mol (5018.8963 without restraints) Performing minimization step: 3442. Total energy = 5025.0991 kcal/mol (5017.9723 without restraints) Performing minimization step: 3443. Total energy = 5024.1741 kcal/mol (5017.0490 without restraints) Performing minimization step: 3444. Total energy = 5023.2499 kcal/mol (5016.1264 without restraints) Performing minimization step: 3445. Total energy = 5022.3267 kcal/mol (5015.2048 without restraints) Performing minimization step: 3446. Total energy = 5021.4038 kcal/mol (5014.2835 without restraints) Performing minimization step: 3447. Total energy = 5020.4817 kcal/mol (5013.3632 without restraints) Performing minimization step: 3448. Total energy = 5019.5600 kcal/mol (5012.4430 without restraints) Performing minimization step: 3449. Total energy = 5018.6397 kcal/mol (5011.5244 without restraints) Performing minimization step: 3450. Total energy = 5017.7199 kcal/mol (5010.6062 without restraints) Performing minimization step: 3451. Total energy = 5016.8005 kcal/mol (5009.6884 without restraints) Performing minimization step: 3452. Total energy = 5015.8816 kcal/mol (5008.7711 without restraints) Performing minimization step: 3453. Total energy = 5014.9637 kcal/mol (5007.8550 without restraints) Performing minimization step: 3454. Total energy = 5014.0465 kcal/mol (5006.9393 without restraints) Performing minimization step: 3455. Total energy = 5013.1296 kcal/mol (5006.0241 without restraints) Performing minimization step: 3456. Total energy = 5012.2134 kcal/mol (5005.1094 without restraints) Performing minimization step: 3457. Total energy = 5011.2977 kcal/mol (5004.1954 without restraints) Performing minimization step: 3458. Total energy = 5010.3827 kcal/mol (5003.2820 without restraints) Performing minimization step: 3459. Total energy = 5009.4684 kcal/mol (5002.3693 without restraints) Performing minimization step: 3460. Total energy = 5008.5548 kcal/mol (5001.4573 without restraints) Performing minimization step: 3461. Total energy = 5007.6418 kcal/mol (5000.5460 without restraints) Performing minimization step: 3462. Total energy = 5006.7294 kcal/mol (4999.6352 without restraints) Performing minimization step: 3463. Total energy = 5005.8176 kcal/mol (4998.7249 without restraints) Performing minimization step: 3464. Total energy = 5004.9064 kcal/mol (4997.8155 without restraints) Performing minimization step: 3465. Total energy = 5003.9962 kcal/mol (4996.9069 without restraints) Performing minimization step: 3466. Total energy = 5003.0869 kcal/mol (4995.9992 without restraints) Performing minimization step: 3467. Total energy = 5002.1777 kcal/mol (4995.0916 without restraints) Performing minimization step: 3468. Total energy = 5001.2693 kcal/mol (4994.1849 without restraints) Performing minimization step: 3469. Total energy = 5000.3616 kcal/mol (4993.2789 without restraints) Performing minimization step: 3470. Total energy = 4999.4545 kcal/mol (4992.3733 without restraints) Performing minimization step: 3471. Total energy = 4998.5482 kcal/mol (4991.4685 without restraints) Performing minimization step: 3472. Total energy = 4997.6426 kcal/mol (4990.5646 without restraints) Performing minimization step: 3473. Total energy = 4996.7382 kcal/mol (4989.6619 without restraints) Performing minimization step: 3474. Total energy = 4995.8336 kcal/mol (4988.7589 without restraints) Performing minimization step: 3475. Total energy = 4994.9297 kcal/mol (4987.8566 without restraints) Performing minimization step: 3476. Total energy = 4994.0264 kcal/mol (4986.9549 without restraints) Performing minimization step: 3477. Total energy = 4993.1237 kcal/mol (4986.0536 without restraints) Performing minimization step: 3478. Total energy = 4992.2215 kcal/mol (4985.1532 without restraints) Performing minimization step: 3479. Total energy = 4991.3198 kcal/mol (4984.2531 without restraints) Performing minimization step: 3480. Total energy = 4990.4190 kcal/mol (4983.3539 without restraints) Performing minimization step: 3481. Total energy = 4989.5189 kcal/mol (4982.4555 without restraints) Performing minimization step: 3482. Total energy = 4988.6196 kcal/mol (4981.5578 without restraints) Performing minimization step: 3483. Total energy = 4987.7208 kcal/mol (4980.6605 without restraints) Performing minimization step: 3484. Total energy = 4986.8225 kcal/mol (4979.7639 without restraints) Performing minimization step: 3485. Total energy = 4985.9250 kcal/mol (4978.8680 without restraints) Performing minimization step: 3486. Total energy = 4985.0282 kcal/mol (4977.9728 without restraints) Performing minimization step: 3487. Total energy = 4984.1321 kcal/mol (4977.0783 without restraints) Performing minimization step: 3488. Total energy = 4983.2365 kcal/mol (4976.1843 without restraints) Performing minimization step: 3489. Total energy = 4982.3419 kcal/mol (4975.2913 without restraints) Performing minimization step: 3490. Total energy = 4981.4478 kcal/mol (4974.3988 without restraints) Performing minimization step: 3491. Total energy = 4980.5540 kcal/mol (4973.5066 without restraints) Performing minimization step: 3492. Total energy = 4979.6616 kcal/mol (4972.6158 without restraints) Performing minimization step: 3493. Total energy = 4978.7691 kcal/mol (4971.7251 without restraints) Performing minimization step: 3494. Total energy = 4977.8772 kcal/mol (4970.8347 without restraints) Performing minimization step: 3495. Total energy = 4976.9860 kcal/mol (4969.9451 without restraints) Performing minimization step: 3496. Total energy = 4976.0953 kcal/mol (4969.0560 without restraints) Performing minimization step: 3497. Total energy = 4975.2055 kcal/mol (4968.1678 without restraints) Performing minimization step: 3498. Total energy = 4974.3161 kcal/mol (4967.2799 without restraints) Performing minimization step: 3499. Total energy = 4973.4275 kcal/mol (4966.3931 without restraints) Performing minimization step: 3500. Total energy = 4972.5394 kcal/mol (4965.5065 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 4971.6520 kcal/mol (4964.6207 without restraints) Performing minimization step: 3502. Total energy = 4970.7653 kcal/mol (4963.7355 without restraints) Performing minimization step: 3503. Total energy = 4969.8794 kcal/mol (4962.8514 without restraints) Performing minimization step: 3504. Total energy = 4968.9937 kcal/mol (4961.9671 without restraints) Performing minimization step: 3505. Total energy = 4968.1091 kcal/mol (4961.0842 without restraints) Performing minimization step: 3506. Total energy = 4967.2249 kcal/mol (4960.2015 without restraints) Performing minimization step: 3507. Total energy = 4966.3411 kcal/mol (4959.3194 without restraints) Performing minimization step: 3508. Total energy = 4965.4579 kcal/mol (4958.4378 without restraints) Performing minimization step: 3509. Total energy = 4964.5754 kcal/mol (4957.5568 without restraints) Performing minimization step: 3510. Total energy = 4963.6934 kcal/mol (4956.6765 without restraints) Performing minimization step: 3511. Total energy = 4962.8120 kcal/mol (4955.7967 without restraints) Performing minimization step: 3512. Total energy = 4961.9313 kcal/mol (4954.9175 without restraints) Performing minimization step: 3513. Total energy = 4961.0509 kcal/mol (4954.0388 without restraints) Performing minimization step: 3514. Total energy = 4960.1714 kcal/mol (4953.1609 without restraints) Performing minimization step: 3515. Total energy = 4959.2927 kcal/mol (4952.2838 without restraints) Performing minimization step: 3516. Total energy = 4958.4144 kcal/mol (4951.4071 without restraints) Performing minimization step: 3517. Total energy = 4957.5368 kcal/mol (4950.5310 without restraints) Performing minimization step: 3518. Total energy = 4956.6600 kcal/mol (4949.6558 without restraints) Performing minimization step: 3519. Total energy = 4955.7836 kcal/mol (4948.7810 without restraints) Performing minimization step: 3520. Total energy = 4954.9081 kcal/mol (4947.9071 without restraints) Performing minimization step: 3521. Total energy = 4954.0331 kcal/mol (4947.0338 without restraints) Performing minimization step: 3522. Total energy = 4953.1588 kcal/mol (4946.1610 without restraints) Performing minimization step: 3523. Total energy = 4952.2848 kcal/mol (4945.2886 without restraints) Performing minimization step: 3524. Total energy = 4951.4115 kcal/mol (4944.4170 without restraints) Performing minimization step: 3525. Total energy = 4950.5393 kcal/mol (4943.5463 without restraints) Performing minimization step: 3526. Total energy = 4949.6674 kcal/mol (4942.6761 without restraints) Performing minimization step: 3527. Total energy = 4948.7959 kcal/mol (4941.8060 without restraints) Performing minimization step: 3528. Total energy = 4947.9249 kcal/mol (4940.9366 without restraints) Performing minimization step: 3529. Total energy = 4947.0547 kcal/mol (4940.0680 without restraints) Performing minimization step: 3530. Total energy = 4946.1851 kcal/mol (4939.2000 without restraints) Performing minimization step: 3531. Total energy = 4945.3160 kcal/mol (4938.3325 without restraints) Performing minimization step: 3532. Total energy = 4944.4477 kcal/mol (4937.4658 without restraints) Performing minimization step: 3533. Total energy = 4943.5797 kcal/mol (4936.5994 without restraints) Performing minimization step: 3534. Total energy = 4942.7124 kcal/mol (4935.7337 without restraints) Performing minimization step: 3535. Total energy = 4941.8458 kcal/mol (4934.8687 without restraints) Performing minimization step: 3536. Total energy = 4940.9797 kcal/mol (4934.0041 without restraints) Performing minimization step: 3537. Total energy = 4940.1141 kcal/mol (4933.1401 without restraints) Performing minimization step: 3538. Total energy = 4939.2497 kcal/mol (4932.2772 without restraints) Performing minimization step: 3539. Total energy = 4938.3855 kcal/mol (4931.4147 without restraints) Performing minimization step: 3540. Total energy = 4937.5219 kcal/mol (4930.5528 without restraints) Performing minimization step: 3541. Total energy = 4936.6593 kcal/mol (4929.6916 without restraints) Performing minimization step: 3542. Total energy = 4935.7967 kcal/mol (4928.8306 without restraints) Performing minimization step: 3543. Total energy = 4934.9345 kcal/mol (4927.9700 without restraints) Performing minimization step: 3544. Total energy = 4934.0731 kcal/mol (4927.1102 without restraints) Performing minimization step: 3545. Total energy = 4933.2127 kcal/mol (4926.2513 without restraints) Performing minimization step: 3546. Total energy = 4932.3525 kcal/mol (4925.3927 without restraints) Performing minimization step: 3547. Total energy = 4931.4927 kcal/mol (4924.5345 without restraints) Performing minimization step: 3548. Total energy = 4930.6337 kcal/mol (4923.6771 without restraints) Performing minimization step: 3549. Total energy = 4929.7755 kcal/mol (4922.8204 without restraints) Performing minimization step: 3550. Total energy = 4928.9176 kcal/mol (4921.9642 without restraints) Performing minimization step: 3551. Total energy = 4928.0607 kcal/mol (4921.1089 without restraints) Performing minimization step: 3552. Total energy = 4927.2044 kcal/mol (4920.2540 without restraints) Performing minimization step: 3553. Total energy = 4926.3485 kcal/mol (4919.3998 without restraints) Performing minimization step: 3554. Total energy = 4925.4931 kcal/mol (4918.5459 without restraints) Performing minimization step: 3555. Total energy = 4924.6382 kcal/mol (4917.6927 without restraints) Performing minimization step: 3556. Total energy = 4923.7843 kcal/mol (4916.8404 without restraints) Performing minimization step: 3557. Total energy = 4922.9308 kcal/mol (4915.9884 without restraints) Performing minimization step: 3558. Total energy = 4922.0777 kcal/mol (4915.1368 without restraints) Performing minimization step: 3559. Total energy = 4921.2259 kcal/mol (4914.2867 without restraints) Performing minimization step: 3560. Total energy = 4920.3747 kcal/mol (4913.4370 without restraints) Performing minimization step: 3561. Total energy = 4919.5231 kcal/mol (4912.5869 without restraints) Performing minimization step: 3562. Total energy = 4918.6723 kcal/mol (4911.7377 without restraints) Performing minimization step: 3563. Total energy = 4917.8221 kcal/mol (4910.8891 without restraints) Performing minimization step: 3564. Total energy = 4916.9726 kcal/mol (4910.0412 without restraints) Performing minimization step: 3565. Total energy = 4916.1236 kcal/mol (4909.1938 without restraints) Performing minimization step: 3566. Total energy = 4915.2754 kcal/mol (4908.3471 without restraints) Performing minimization step: 3567. Total energy = 4914.4278 kcal/mol (4907.5011 without restraints) Performing minimization step: 3568. Total energy = 4913.5809 kcal/mol (4906.6558 without restraints) Performing minimization step: 3569. Total energy = 4912.7349 kcal/mol (4905.8113 without restraints) Performing minimization step: 3570. Total energy = 4911.8890 kcal/mol (4904.9670 without restraints) Performing minimization step: 3571. Total energy = 4911.0439 kcal/mol (4904.1236 without restraints) Performing minimization step: 3572. Total energy = 4910.1993 kcal/mol (4903.2804 without restraints) Performing minimization step: 3573. Total energy = 4909.3552 kcal/mol (4902.4379 without restraints) Performing minimization step: 3574. Total energy = 4908.5118 kcal/mol (4901.5959 without restraints) Performing minimization step: 3575. Total energy = 4907.6685 kcal/mol (4900.7542 without restraints) Performing minimization step: 3576. Total energy = 4906.8257 kcal/mol (4899.9131 without restraints) Performing minimization step: 3577. Total energy = 4905.9839 kcal/mol (4899.0728 without restraints) Performing minimization step: 3578. Total energy = 4905.1424 kcal/mol (4898.2329 without restraints) Performing minimization step: 3579. Total energy = 4904.3020 kcal/mol (4897.3941 without restraints) Performing minimization step: 3580. Total energy = 4903.4619 kcal/mol (4896.5556 without restraints) Performing minimization step: 3581. Total energy = 4902.6222 kcal/mol (4895.7174 without restraints) Performing minimization step: 3582. Total energy = 4901.7829 kcal/mol (4894.8796 without restraints) Performing minimization step: 3583. Total energy = 4900.9448 kcal/mol (4894.0431 without restraints) Performing minimization step: 3584. Total energy = 4900.1070 kcal/mol (4893.2069 without restraints) Performing minimization step: 3585. Total energy = 4899.2698 kcal/mol (4892.3712 without restraints) Performing minimization step: 3586. Total energy = 4898.4333 kcal/mol (4891.5363 without restraints) Performing minimization step: 3587. Total energy = 4897.5970 kcal/mol (4890.7016 without restraints) Performing minimization step: 3588. Total energy = 4896.7619 kcal/mol (4889.8680 without restraints) Performing minimization step: 3589. Total energy = 4895.9272 kcal/mol (4889.0350 without restraints) Performing minimization step: 3590. Total energy = 4895.0933 kcal/mol (4888.2026 without restraints) Performing minimization step: 3591. Total energy = 4894.2594 kcal/mol (4887.3703 without restraints) Performing minimization step: 3592. Total energy = 4893.4263 kcal/mol (4886.5386 without restraints) Performing minimization step: 3593. Total energy = 4892.5937 kcal/mol (4885.7076 without restraints) Performing minimization step: 3594. Total energy = 4891.7615 kcal/mol (4884.8769 without restraints) Performing minimization step: 3595. Total energy = 4890.9297 kcal/mol (4884.0467 without restraints) Performing minimization step: 3596. Total energy = 4890.0988 kcal/mol (4883.2173 without restraints) Performing minimization step: 3597. Total energy = 4889.2682 kcal/mol (4882.3883 without restraints) Performing minimization step: 3598. Total energy = 4888.4384 kcal/mol (4881.5601 without restraints) Performing minimization step: 3599. Total energy = 4887.6091 kcal/mol (4880.7323 without restraints) Performing minimization step: 3600. Total energy = 4886.7803 kcal/mol (4879.9052 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 4885.9523 kcal/mol (4879.0786 without restraints) Performing minimization step: 3602. Total energy = 4885.1248 kcal/mol (4878.2527 without restraints) Performing minimization step: 3603. Total energy = 4884.2977 kcal/mol (4877.4271 without restraints) Performing minimization step: 3604. Total energy = 4883.4711 kcal/mol (4876.6021 without restraints) Performing minimization step: 3605. Total energy = 4882.6451 kcal/mol (4875.7776 without restraints) Performing minimization step: 3606. Total energy = 4881.8200 kcal/mol (4874.9541 without restraints) Performing minimization step: 3607. Total energy = 4880.9949 kcal/mol (4874.1305 without restraints) Performing minimization step: 3608. Total energy = 4880.1708 kcal/mol (4873.3079 without restraints) Performing minimization step: 3609. Total energy = 4879.3474 kcal/mol (4872.4861 without restraints) Performing minimization step: 3610. Total energy = 4878.5241 kcal/mol (4871.6644 without restraints) Performing minimization step: 3611. Total energy = 4877.7015 kcal/mol (4870.8433 without restraints) Performing minimization step: 3612. Total energy = 4876.8795 kcal/mol (4870.0229 without restraints) Performing minimization step: 3613. Total energy = 4876.0580 kcal/mol (4869.2028 without restraints) Performing minimization step: 3614. Total energy = 4875.2370 kcal/mol (4868.3836 without restraints) Performing minimization step: 3615. Total energy = 4874.4169 kcal/mol (4867.5649 without restraints) Performing minimization step: 3616. Total energy = 4873.5974 kcal/mol (4866.7470 without restraints) Performing minimization step: 3617. Total energy = 4872.7783 kcal/mol (4865.9294 without restraints) Performing minimization step: 3618. Total energy = 4871.9599 kcal/mol (4865.1127 without restraints) Performing minimization step: 3619. Total energy = 4871.1418 kcal/mol (4864.2960 without restraints) Performing minimization step: 3620. Total energy = 4870.3244 kcal/mol (4863.4801 without restraints) Performing minimization step: 3621. Total energy = 4869.5074 kcal/mol (4862.6647 without restraints) Performing minimization step: 3622. Total energy = 4868.6913 kcal/mol (4861.8501 without restraints) Performing minimization step: 3623. Total energy = 4867.8757 kcal/mol (4861.0361 without restraints) Performing minimization step: 3624. Total energy = 4867.0604 kcal/mol (4860.2223 without restraints) Performing minimization step: 3625. Total energy = 4866.2461 kcal/mol (4859.4096 without restraints) Performing minimization step: 3626. Total energy = 4865.4314 kcal/mol (4858.5963 without restraints) Performing minimization step: 3627. Total energy = 4864.6178 kcal/mol (4857.7844 without restraints) Performing minimization step: 3628. Total energy = 4863.8047 kcal/mol (4856.9727 without restraints) Performing minimization step: 3629. Total energy = 4862.9921 kcal/mol (4856.1618 without restraints) Performing minimization step: 3630. Total energy = 4862.1805 kcal/mol (4855.3517 without restraints) Performing minimization step: 3631. Total energy = 4861.3695 kcal/mol (4854.5422 without restraints) Performing minimization step: 3632. Total energy = 4860.5587 kcal/mol (4853.7329 without restraints) Performing minimization step: 3633. Total energy = 4859.7485 kcal/mol (4852.9243 without restraints) Performing minimization step: 3634. Total energy = 4858.9392 kcal/mol (4852.1165 without restraints) Performing minimization step: 3635. Total energy = 4858.1299 kcal/mol (4851.3087 without restraints) Performing minimization step: 3636. Total energy = 4857.3213 kcal/mol (4850.5018 without restraints) Performing minimization step: 3637. Total energy = 4856.5132 kcal/mol (4849.6951 without restraints) Performing minimization step: 3638. Total energy = 4855.7056 kcal/mol (4848.8890 without restraints) Performing minimization step: 3639. Total energy = 4854.8985 kcal/mol (4848.0836 without restraints) Performing minimization step: 3640. Total energy = 4854.0917 kcal/mol (4847.2783 without restraints) Performing minimization step: 3641. Total energy = 4853.2862 kcal/mol (4846.4743 without restraints) Performing minimization step: 3642. Total energy = 4852.4810 kcal/mol (4845.6706 without restraints) Performing minimization step: 3643. Total energy = 4851.6761 kcal/mol (4844.8672 without restraints) Performing minimization step: 3644. Total energy = 4850.8717 kcal/mol (4844.0644 without restraints) Performing minimization step: 3645. Total energy = 4850.0679 kcal/mol (4843.2621 without restraints) Performing minimization step: 3646. Total energy = 4849.2648 kcal/mol (4842.4606 without restraints) Performing minimization step: 3647. Total energy = 4848.4622 kcal/mol (4841.6594 without restraints) Performing minimization step: 3648. Total energy = 4847.6600 kcal/mol (4840.8588 without restraints) Performing minimization step: 3649. Total energy = 4846.8587 kcal/mol (4840.0591 without restraints) Performing minimization step: 3650. Total energy = 4846.0578 kcal/mol (4839.2598 without restraints) Performing minimization step: 3651. Total energy = 4845.2574 kcal/mol (4838.4608 without restraints) Performing minimization step: 3652. Total energy = 4844.4574 kcal/mol (4837.6623 without restraints) Performing minimization step: 3653. Total energy = 4843.6581 kcal/mol (4836.8645 without restraints) Performing minimization step: 3654. Total energy = 4842.8593 kcal/mol (4836.0673 without restraints) Performing minimization step: 3655. Total energy = 4842.0612 kcal/mol (4835.2707 without restraints) Performing minimization step: 3656. Total energy = 4841.2634 kcal/mol (4834.4744 without restraints) Performing minimization step: 3657. Total energy = 4840.4664 kcal/mol (4833.6790 without restraints) Performing minimization step: 3658. Total energy = 4839.6702 kcal/mol (4832.8842 without restraints) Performing minimization step: 3659. Total energy = 4838.8742 kcal/mol (4832.0898 without restraints) Performing minimization step: 3660. Total energy = 4838.0785 kcal/mol (4831.2956 without restraints) Performing minimization step: 3661. Total energy = 4837.2834 kcal/mol (4830.5020 without restraints) Performing minimization step: 3662. Total energy = 4836.4892 kcal/mol (4829.7094 without restraints) Performing minimization step: 3663. Total energy = 4835.6952 kcal/mol (4828.9169 without restraints) Performing minimization step: 3664. Total energy = 4834.9020 kcal/mol (4828.1252 without restraints) Performing minimization step: 3665. Total energy = 4834.1090 kcal/mol (4827.3338 without restraints) Performing minimization step: 3666. Total energy = 4833.3166 kcal/mol (4826.5429 without restraints) Performing minimization step: 3667. Total energy = 4832.5248 kcal/mol (4825.7526 without restraints) Performing minimization step: 3668. Total energy = 4831.7331 kcal/mol (4824.9624 without restraints) Performing minimization step: 3669. Total energy = 4830.9423 kcal/mol (4824.1731 without restraints) Performing minimization step: 3670. Total energy = 4830.1522 kcal/mol (4823.3846 without restraints) Performing minimization step: 3671. Total energy = 4829.3627 kcal/mol (4822.5966 without restraints) Performing minimization step: 3672. Total energy = 4828.5739 kcal/mol (4821.8093 without restraints) Performing minimization step: 3673. Total energy = 4827.7857 kcal/mol (4821.0227 without restraints) Performing minimization step: 3674. Total energy = 4826.9976 kcal/mol (4820.2360 without restraints) Performing minimization step: 3675. Total energy = 4826.2101 kcal/mol (4819.4501 without restraints) Performing minimization step: 3676. Total energy = 4825.4231 kcal/mol (4818.6646 without restraints) Performing minimization step: 3677. Total energy = 4824.6367 kcal/mol (4817.8798 without restraints) Performing minimization step: 3678. Total energy = 4823.8517 kcal/mol (4817.0963 without restraints) Performing minimization step: 3679. Total energy = 4823.0661 kcal/mol (4816.3122 without restraints) Performing minimization step: 3680. Total energy = 4822.2814 kcal/mol (4815.5290 without restraints) Performing minimization step: 3681. Total energy = 4821.4969 kcal/mol (4814.7459 without restraints) Performing minimization step: 3682. Total energy = 4820.7131 kcal/mol (4813.9637 without restraints) Performing minimization step: 3683. Total energy = 4819.9301 kcal/mol (4813.1823 without restraints) Performing minimization step: 3684. Total energy = 4819.1473 kcal/mol (4812.4010 without restraints) Performing minimization step: 3685. Total energy = 4818.3654 kcal/mol (4811.6205 without restraints) Performing minimization step: 3686. Total energy = 4817.5837 kcal/mol (4810.8405 without restraints) Performing minimization step: 3687. Total energy = 4816.8030 kcal/mol (4810.0612 without restraints) Performing minimization step: 3688. Total energy = 4816.0220 kcal/mol (4809.2817 without restraints) Performing minimization step: 3689. Total energy = 4815.2419 kcal/mol (4808.5031 without restraints) Performing minimization step: 3690. Total energy = 4814.4624 kcal/mol (4807.7252 without restraints) Performing minimization step: 3691. Total energy = 4813.6837 kcal/mol (4806.9479 without restraints) Performing minimization step: 3692. Total energy = 4812.9054 kcal/mol (4806.1712 without restraints) Performing minimization step: 3693. Total energy = 4812.1274 kcal/mol (4805.3947 without restraints) Performing minimization step: 3694. Total energy = 4811.3496 kcal/mol (4804.6184 without restraints) Performing minimization step: 3695. Total energy = 4810.5728 kcal/mol (4803.8431 without restraints) Performing minimization step: 3696. Total energy = 4809.7963 kcal/mol (4803.0681 without restraints) Performing minimization step: 3697. Total energy = 4809.0206 kcal/mol (4802.2939 without restraints) Performing minimization step: 3698. Total energy = 4808.2455 kcal/mol (4801.5203 without restraints) Performing minimization step: 3699. Total energy = 4807.4709 kcal/mol (4800.7472 without restraints) Performing minimization step: 3700. Total energy = 4806.6965 kcal/mol (4799.9744 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 4805.9230 kcal/mol (4799.2023 without restraints) Performing minimization step: 3702. Total energy = 4805.1496 kcal/mol (4798.4305 without restraints) Performing minimization step: 3703. Total energy = 4804.3773 kcal/mol (4797.6598 without restraints) Performing minimization step: 3704. Total energy = 4803.6052 kcal/mol (4796.8891 without restraints) Performing minimization step: 3705. Total energy = 4802.8335 kcal/mol (4796.1189 without restraints) Performing minimization step: 3706. Total energy = 4802.0627 kcal/mol (4795.3496 without restraints) Performing minimization step: 3707. Total energy = 4801.2925 kcal/mol (4794.5809 without restraints) Performing minimization step: 3708. Total energy = 4800.5229 kcal/mol (4793.8129 without restraints) Performing minimization step: 3709. Total energy = 4799.7533 kcal/mol (4793.0447 without restraints) Performing minimization step: 3710. Total energy = 4798.9842 kcal/mol (4792.2771 without restraints) Performing minimization step: 3711. Total energy = 4798.2154 kcal/mol (4791.5099 without restraints) Performing minimization step: 3712. Total energy = 4797.4476 kcal/mol (4790.7436 without restraints) Performing minimization step: 3713. Total energy = 4796.6804 kcal/mol (4789.9779 without restraints) Performing minimization step: 3714. Total energy = 4795.9135 kcal/mol (4789.2124 without restraints) Performing minimization step: 3715. Total energy = 4795.1472 kcal/mol (4788.4477 without restraints) Performing minimization step: 3716. Total energy = 4794.3817 kcal/mol (4787.6838 without restraints) Performing minimization step: 3717. Total energy = 4793.6166 kcal/mol (4786.9202 without restraints) Performing minimization step: 3718. Total energy = 4792.8518 kcal/mol (4786.1568 without restraints) Performing minimization step: 3719. Total energy = 4792.0877 kcal/mol (4785.3942 without restraints) Performing minimization step: 3720. Total energy = 4791.3240 kcal/mol (4784.6322 without restraints) Performing minimization step: 3721. Total energy = 4790.5611 kcal/mol (4783.8707 without restraints) Performing minimization step: 3722. Total energy = 4789.7984 kcal/mol (4783.1094 without restraints) Performing minimization step: 3723. Total energy = 4789.0362 kcal/mol (4782.3488 without restraints) Performing minimization step: 3724. Total energy = 4788.2745 kcal/mol (4781.5885 without restraints) Performing minimization step: 3725. Total energy = 4787.5132 kcal/mol (4780.8287 without restraints) Performing minimization step: 3726. Total energy = 4786.7522 kcal/mol (4780.0692 without restraints) Performing minimization step: 3727. Total energy = 4785.9922 kcal/mol (4779.3107 without restraints) Performing minimization step: 3728. Total energy = 4785.2328 kcal/mol (4778.5530 without restraints) Performing minimization step: 3729. Total energy = 4784.4738 kcal/mol (4777.7953 without restraints) Performing minimization step: 3730. Total energy = 4783.7152 kcal/mol (4777.0382 without restraints) Performing minimization step: 3731. Total energy = 4782.9571 kcal/mol (4776.2816 without restraints) Performing minimization step: 3732. Total energy = 4782.1999 kcal/mol (4775.5259 without restraints) Performing minimization step: 3733. Total energy = 4781.4433 kcal/mol (4774.7708 without restraints) Performing minimization step: 3734. Total energy = 4780.6867 kcal/mol (4774.0157 without restraints) Performing minimization step: 3735. Total energy = 4779.9308 kcal/mol (4773.2613 without restraints) Performing minimization step: 3736. Total energy = 4779.1754 kcal/mol (4772.5074 without restraints) Performing minimization step: 3737. Total energy = 4778.4204 kcal/mol (4771.7539 without restraints) Performing minimization step: 3738. Total energy = 4777.6658 kcal/mol (4771.0008 without restraints) Performing minimization step: 3739. Total energy = 4776.9118 kcal/mol (4770.2483 without restraints) Performing minimization step: 3740. Total energy = 4776.1585 kcal/mol (4769.4966 without restraints) Performing minimization step: 3741. Total energy = 4775.4056 kcal/mol (4768.7451 without restraints) Performing minimization step: 3742. Total energy = 4774.6531 kcal/mol (4767.9941 without restraints) Performing minimization step: 3743. Total energy = 4773.9010 kcal/mol (4767.2434 without restraints) Performing minimization step: 3744. Total energy = 4773.1499 kcal/mol (4766.4939 without restraints) Performing minimization step: 3745. Total energy = 4772.3991 kcal/mol (4765.7446 without restraints) Performing minimization step: 3746. Total energy = 4771.6485 kcal/mol (4764.9955 without restraints) Performing minimization step: 3747. Total energy = 4770.8988 kcal/mol (4764.2473 without restraints) Performing minimization step: 3748. Total energy = 4770.1495 kcal/mol (4763.4994 without restraints) Performing minimization step: 3749. Total energy = 4769.4010 kcal/mol (4762.7525 without restraints) Performing minimization step: 3750. Total energy = 4768.6527 kcal/mol (4762.0057 without restraints) Performing minimization step: 3751. Total energy = 4767.9057 kcal/mol (4761.2602 without restraints) Performing minimization step: 3752. Total energy = 4767.1583 kcal/mol (4760.5143 without restraints) Performing minimization step: 3753. Total energy = 4766.4114 kcal/mol (4759.7687 without restraints) Performing minimization step: 3754. Total energy = 4765.6656 kcal/mol (4759.0245 without restraints) Performing minimization step: 3755. Total energy = 4764.9200 kcal/mol (4758.2804 without restraints) Performing minimization step: 3756. Total energy = 4764.1749 kcal/mol (4757.5368 without restraints) Performing minimization step: 3757. Total energy = 4763.4303 kcal/mol (4756.7937 without restraints) Performing minimization step: 3758. Total energy = 4762.6858 kcal/mol (4756.0507 without restraints) Performing minimization step: 3759. Total energy = 4761.9420 kcal/mol (4755.3084 without restraints) Performing minimization step: 3760. Total energy = 4761.1989 kcal/mol (4754.5668 without restraints) Performing minimization step: 3761. Total energy = 4760.4561 kcal/mol (4753.8254 without restraints) Performing minimization step: 3762. Total energy = 4759.7137 kcal/mol (4753.0845 without restraints) Performing minimization step: 3763. Total energy = 4758.9721 kcal/mol (4752.3444 without restraints) Performing minimization step: 3764. Total energy = 4758.2310 kcal/mol (4751.6048 without restraints) Performing minimization step: 3765. Total energy = 4757.4903 kcal/mol (4750.8656 without restraints) Performing minimization step: 3766. Total energy = 4756.7504 kcal/mol (4750.1271 without restraints) Performing minimization step: 3767. Total energy = 4756.0104 kcal/mol (4749.3886 without restraints) Performing minimization step: 3768. Total energy = 4755.2712 kcal/mol (4748.6509 without restraints) Performing minimization step: 3769. Total energy = 4754.5330 kcal/mol (4747.9143 without restraints) Performing minimization step: 3770. Total energy = 4753.7949 kcal/mol (4747.1776 without restraints) Performing minimization step: 3771. Total energy = 4753.0571 kcal/mol (4746.4413 without restraints) Performing minimization step: 3772. Total energy = 4752.3199 kcal/mol (4745.7056 without restraints) Performing minimization step: 3773. Total energy = 4751.5832 kcal/mol (4744.9703 without restraints) Performing minimization step: 3774. Total energy = 4750.8470 kcal/mol (4744.2358 without restraints) Performing minimization step: 3775. Total energy = 4750.1114 kcal/mol (4743.5016 without restraints) Performing minimization step: 3776. Total energy = 4749.3762 kcal/mol (4742.7678 without restraints) Performing minimization step: 3777. Total energy = 4748.6415 kcal/mol (4742.0346 without restraints) Performing minimization step: 3778. Total energy = 4747.9071 kcal/mol (4741.3017 without restraints) Performing minimization step: 3779. Total energy = 4747.1734 kcal/mol (4740.5695 without restraints) Performing minimization step: 3780. Total energy = 4746.4403 kcal/mol (4739.8378 without restraints) Performing minimization step: 3781. Total energy = 4745.7075 kcal/mol (4739.1065 without restraints) Performing minimization step: 3782. Total energy = 4744.9754 kcal/mol (4738.3759 without restraints) Performing minimization step: 3783. Total energy = 4744.2441 kcal/mol (4737.6461 without restraints) Performing minimization step: 3784. Total energy = 4743.5132 kcal/mol (4736.9168 without restraints) Performing minimization step: 3785. Total energy = 4742.7829 kcal/mol (4736.1878 without restraints) Performing minimization step: 3786. Total energy = 4742.0533 kcal/mol (4735.4599 without restraints) Performing minimization step: 3787. Total energy = 4741.3238 kcal/mol (4734.7317 without restraints) Performing minimization step: 3788. Total energy = 4740.5945 kcal/mol (4734.0040 without restraints) Performing minimization step: 3789. Total energy = 4739.8656 kcal/mol (4733.2765 without restraints) Performing minimization step: 3790. Total energy = 4739.1375 kcal/mol (4732.5499 without restraints) Performing minimization step: 3791. Total energy = 4738.4098 kcal/mol (4731.8236 without restraints) Performing minimization step: 3792. Total energy = 4737.6825 kcal/mol (4731.0978 without restraints) Performing minimization step: 3793. Total energy = 4736.9558 kcal/mol (4730.3727 without restraints) Performing minimization step: 3794. Total energy = 4736.2299 kcal/mol (4729.6482 without restraints) Performing minimization step: 3795. Total energy = 4735.5044 kcal/mol (4728.9242 without restraints) Performing minimization step: 3796. Total energy = 4734.7793 kcal/mol (4728.2006 without restraints) Performing minimization step: 3797. Total energy = 4734.0550 kcal/mol (4727.4778 without restraints) Performing minimization step: 3798. Total energy = 4733.3309 kcal/mol (4726.7551 without restraints) Performing minimization step: 3799. Total energy = 4732.6073 kcal/mol (4726.0329 without restraints) Performing minimization step: 3800. Total energy = 4731.8842 kcal/mol (4725.3114 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 4731.1616 kcal/mol (4724.5902 without restraints) Performing minimization step: 3802. Total energy = 4730.4395 kcal/mol (4723.8696 without restraints) Performing minimization step: 3803. Total energy = 4729.7176 kcal/mol (4723.1492 without restraints) Performing minimization step: 3804. Total energy = 4728.9963 kcal/mol (4722.4294 without restraints) Performing minimization step: 3805. Total energy = 4728.2757 kcal/mol (4721.7103 without restraints) Performing minimization step: 3806. Total energy = 4727.5555 kcal/mol (4720.9916 without restraints) Performing minimization step: 3807. Total energy = 4726.8360 kcal/mol (4720.2735 without restraints) Performing minimization step: 3808. Total energy = 4726.1172 kcal/mol (4719.5562 without restraints) Performing minimization step: 3809. Total energy = 4725.3984 kcal/mol (4718.8389 without restraints) Performing minimization step: 3810. Total energy = 4724.6802 kcal/mol (4718.1223 without restraints) Performing minimization step: 3811. Total energy = 4723.9627 kcal/mol (4717.4061 without restraints) Performing minimization step: 3812. Total energy = 4723.2457 kcal/mol (4716.6906 without restraints) Performing minimization step: 3813. Total energy = 4722.5287 kcal/mol (4715.9750 without restraints) Performing minimization step: 3814. Total energy = 4721.8126 kcal/mol (4715.2605 without restraints) Performing minimization step: 3815. Total energy = 4721.0968 kcal/mol (4714.5461 without restraints) Performing minimization step: 3816. Total energy = 4720.3812 kcal/mol (4713.8320 without restraints) Performing minimization step: 3817. Total energy = 4719.6668 kcal/mol (4713.1190 without restraints) Performing minimization step: 3818. Total energy = 4718.9524 kcal/mol (4712.4061 without restraints) Performing minimization step: 3819. Total energy = 4718.2385 kcal/mol (4711.6937 without restraints) Performing minimization step: 3820. Total energy = 4717.5256 kcal/mol (4710.9824 without restraints) Performing minimization step: 3821. Total energy = 4716.8130 kcal/mol (4710.2711 without restraints) Performing minimization step: 3822. Total energy = 4716.1006 kcal/mol (4709.5602 without restraints) Performing minimization step: 3823. Total energy = 4715.3888 kcal/mol (4708.8498 without restraints) Performing minimization step: 3824. Total energy = 4714.6774 kcal/mol (4708.1400 without restraints) Performing minimization step: 3825. Total energy = 4713.9668 kcal/mol (4707.4309 without restraints) Performing minimization step: 3826. Total energy = 4713.2565 kcal/mol (4706.7220 without restraints) Performing minimization step: 3827. Total energy = 4712.5465 kcal/mol (4706.0135 without restraints) Performing minimization step: 3828. Total energy = 4711.8369 kcal/mol (4705.3053 without restraints) Performing minimization step: 3829. Total energy = 4711.1283 kcal/mol (4704.5982 without restraints) Performing minimization step: 3830. Total energy = 4710.4201 kcal/mol (4703.8914 without restraints) Performing minimization step: 3831. Total energy = 4709.7121 kcal/mol (4703.1849 without restraints) Performing minimization step: 3832. Total energy = 4709.0046 kcal/mol (4702.4789 without restraints) Performing minimization step: 3833. Total energy = 4708.2976 kcal/mol (4701.7734 without restraints) Performing minimization step: 3834. Total energy = 4707.5913 kcal/mol (4701.0686 without restraints) Performing minimization step: 3835. Total energy = 4706.8855 kcal/mol (4700.3642 without restraints) Performing minimization step: 3836. Total energy = 4706.1799 kcal/mol (4699.6601 without restraints) Performing minimization step: 3837. Total energy = 4705.4747 kcal/mol (4698.9563 without restraints) Performing minimization step: 3838. Total energy = 4704.7707 kcal/mol (4698.2541 without restraints) Performing minimization step: 3839. Total energy = 4704.0673 kcal/mol (4697.5519 without restraints) Performing minimization step: 3840. Total energy = 4703.3639 kcal/mol (4696.8500 without restraints) Performing minimization step: 3841. Total energy = 4702.6610 kcal/mol (4696.1486 without restraints) Performing minimization step: 3842. Total energy = 4701.9584 kcal/mol (4695.4474 without restraints) Performing minimization step: 3843. Total energy = 4701.2562 kcal/mol (4694.7467 without restraints) Performing minimization step: 3844. Total energy = 4700.5548 kcal/mol (4694.0467 without restraints) Performing minimization step: 3845. Total energy = 4699.8541 kcal/mol (4693.3475 without restraints) Performing minimization step: 3846. Total energy = 4699.1537 kcal/mol (4692.6487 without restraints) Performing minimization step: 3847. Total energy = 4698.4537 kcal/mol (4691.9500 without restraints) Performing minimization step: 3848. Total energy = 4697.7539 kcal/mol (4691.2516 without restraints) Performing minimization step: 3849. Total energy = 4697.0550 kcal/mol (4690.5542 without restraints) Performing minimization step: 3850. Total energy = 4696.3565 kcal/mol (4689.8572 without restraints) Performing minimization step: 3851. Total energy = 4695.6579 kcal/mol (4689.1602 without restraints) Performing minimization step: 3852. Total energy = 4694.9602 kcal/mol (4688.4639 without restraints) Performing minimization step: 3853. Total energy = 4694.2628 kcal/mol (4687.7679 without restraints) Performing minimization step: 3854. Total energy = 4693.5660 kcal/mol (4687.0725 without restraints) Performing minimization step: 3855. Total energy = 4692.8698 kcal/mol (4686.3779 without restraints) Performing minimization step: 3856. Total energy = 4692.1740 kcal/mol (4685.6835 without restraints) Performing minimization step: 3857. Total energy = 4691.4789 kcal/mol (4684.9898 without restraints) Performing minimization step: 3858. Total energy = 4690.7839 kcal/mol (4684.2964 without restraints) Performing minimization step: 3859. Total energy = 4690.0898 kcal/mol (4683.6038 without restraints) Performing minimization step: 3860. Total energy = 4689.3958 kcal/mol (4682.9111 without restraints) Performing minimization step: 3861. Total energy = 4688.7022 kcal/mol (4682.2190 without restraints) Performing minimization step: 3862. Total energy = 4688.0096 kcal/mol (4681.5279 without restraints) Performing minimization step: 3863. Total energy = 4687.3172 kcal/mol (4680.8370 without restraints) Performing minimization step: 3864. Total energy = 4686.6254 kcal/mol (4680.1465 without restraints) Performing minimization step: 3865. Total energy = 4685.9339 kcal/mol (4679.4567 without restraints) Performing minimization step: 3866. Total energy = 4685.2428 kcal/mol (4678.7669 without restraints) Performing minimization step: 3867. Total energy = 4684.5519 kcal/mol (4678.0777 without restraints) Performing minimization step: 3868. Total energy = 4683.8620 kcal/mol (4677.3890 without restraints) Performing minimization step: 3869. Total energy = 4683.1725 kcal/mol (4676.7009 without restraints) Performing minimization step: 3870. Total energy = 4682.4836 kcal/mol (4676.0137 without restraints) Performing minimization step: 3871. Total energy = 4681.7954 kcal/mol (4675.3268 without restraints) Performing minimization step: 3872. Total energy = 4681.1071 kcal/mol (4674.6400 without restraints) Performing minimization step: 3873. Total energy = 4680.4195 kcal/mol (4673.9539 without restraints) Performing minimization step: 3874. Total energy = 4679.7321 kcal/mol (4673.2679 without restraints) Performing minimization step: 3875. Total energy = 4679.0453 kcal/mol (4672.5825 without restraints) Performing minimization step: 3876. Total energy = 4678.3593 kcal/mol (4671.8981 without restraints) Performing minimization step: 3877. Total energy = 4677.6741 kcal/mol (4671.2144 without restraints) Performing minimization step: 3878. Total energy = 4676.9891 kcal/mol (4670.5307 without restraints) Performing minimization step: 3879. Total energy = 4676.3044 kcal/mol (4669.8475 without restraints) Performing minimization step: 3880. Total energy = 4675.6203 kcal/mol (4669.1648 without restraints) Performing minimization step: 3881. Total energy = 4674.9364 kcal/mol (4668.4824 without restraints) Performing minimization step: 3882. Total energy = 4674.2530 kcal/mol (4667.8006 without restraints) Performing minimization step: 3883. Total energy = 4673.5701 kcal/mol (4667.1190 without restraints) Performing minimization step: 3884. Total energy = 4672.8879 kcal/mol (4666.4383 without restraints) Performing minimization step: 3885. Total energy = 4672.2059 kcal/mol (4665.7577 without restraints) Performing minimization step: 3886. Total energy = 4671.5243 kcal/mol (4665.0776 without restraints) Performing minimization step: 3887. Total energy = 4670.8435 kcal/mol (4664.3985 without restraints) Performing minimization step: 3888. Total energy = 4670.1635 kcal/mol (4663.7197 without restraints) Performing minimization step: 3889. Total energy = 4669.4834 kcal/mol (4663.0412 without restraints) Performing minimization step: 3890. Total energy = 4668.8038 kcal/mol (4662.3629 without restraints) Performing minimization step: 3891. Total energy = 4668.1248 kcal/mol (4661.6854 without restraints) Performing minimization step: 3892. Total energy = 4667.4461 kcal/mol (4661.0081 without restraints) Performing minimization step: 3893. Total energy = 4666.7685 kcal/mol (4660.3321 without restraints) Performing minimization step: 3894. Total energy = 4666.0912 kcal/mol (4659.6562 without restraints) Performing minimization step: 3895. Total energy = 4665.4139 kcal/mol (4658.9803 without restraints) Performing minimization step: 3896. Total energy = 4664.7371 kcal/mol (4658.3049 without restraints) Performing minimization step: 3897. Total energy = 4664.0610 kcal/mol (4657.6303 without restraints) Performing minimization step: 3898. Total energy = 4663.3851 kcal/mol (4656.9558 without restraints) Performing minimization step: 3899. Total energy = 4662.7097 kcal/mol (4656.2819 without restraints) Performing minimization step: 3900. Total energy = 4662.0346 kcal/mol (4655.6083 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 4661.3604 kcal/mol (4654.9359 without restraints) Performing minimization step: 3902. Total energy = 4660.6870 kcal/mol (4654.2636 without restraints) Performing minimization step: 3903. Total energy = 4660.0136 kcal/mol (4653.5918 without restraints) Performing minimization step: 3904. Total energy = 4659.3408 kcal/mol (4652.9203 without restraints) Performing minimization step: 3905. Total energy = 4658.6684 kcal/mol (4652.2494 without restraints) Performing minimization step: 3906. Total energy = 4657.9964 kcal/mol (4651.5788 without restraints) Performing minimization step: 3907. Total energy = 4657.3248 kcal/mol (4650.9087 without restraints) Performing minimization step: 3908. Total energy = 4656.6539 kcal/mol (4650.2392 without restraints) Performing minimization step: 3909. Total energy = 4655.9831 kcal/mol (4649.5699 without restraints) Performing minimization step: 3910. Total energy = 4655.3129 kcal/mol (4648.9011 without restraints) Performing minimization step: 3911. Total energy = 4654.6431 kcal/mol (4648.2327 without restraints) Performing minimization step: 3912. Total energy = 4653.9734 kcal/mol (4647.5644 without restraints) Performing minimization step: 3913. Total energy = 4653.3047 kcal/mol (4646.8973 without restraints) Performing minimization step: 3914. Total energy = 4652.6360 kcal/mol (4646.2300 without restraints) Performing minimization step: 3915. Total energy = 4651.9685 kcal/mol (4645.5639 without restraints) Performing minimization step: 3916. Total energy = 4651.3012 kcal/mol (4644.8982 without restraints) Performing minimization step: 3917. Total energy = 4650.6344 kcal/mol (4644.2328 without restraints) Performing minimization step: 3918. Total energy = 4649.9680 kcal/mol (4643.5679 without restraints) Performing minimization step: 3919. Total energy = 4649.3020 kcal/mol (4642.9032 without restraints) Performing minimization step: 3920. Total energy = 4648.6364 kcal/mol (4642.2391 without restraints) Performing minimization step: 3921. Total energy = 4647.9715 kcal/mol (4641.5757 without restraints) Performing minimization step: 3922. Total energy = 4647.3065 kcal/mol (4640.9121 without restraints) Performing minimization step: 3923. Total energy = 4646.6426 kcal/mol (4640.2496 without restraints) Performing minimization step: 3924. Total energy = 4645.9787 kcal/mol (4639.5872 without restraints) Performing minimization step: 3925. Total energy = 4645.3150 kcal/mol (4638.9250 without restraints) Performing minimization step: 3926. Total energy = 4644.6524 kcal/mol (4638.2638 without restraints) Performing minimization step: 3927. Total energy = 4643.9900 kcal/mol (4637.6028 without restraints) Performing minimization step: 3928. Total energy = 4643.3278 kcal/mol (4636.9421 without restraints) Performing minimization step: 3929. Total energy = 4642.6664 kcal/mol (4636.2822 without restraints) Performing minimization step: 3930. Total energy = 4642.0056 kcal/mol (4635.6228 without restraints) Performing minimization step: 3931. Total energy = 4641.3455 kcal/mol (4634.9641 without restraints) Performing minimization step: 3932. Total energy = 4640.6858 kcal/mol (4634.3060 without restraints) Performing minimization step: 3933. Total energy = 4640.0260 kcal/mol (4633.6476 without restraints) Performing minimization step: 3934. Total energy = 4639.3668 kcal/mol (4632.9898 without restraints) Performing minimization step: 3935. Total energy = 4638.7084 kcal/mol (4632.3328 without restraints) Performing minimization step: 3936. Total energy = 4638.0498 kcal/mol (4631.6757 without restraints) Performing minimization step: 3937. Total energy = 4637.3921 kcal/mol (4631.0195 without restraints) Performing minimization step: 3938. Total energy = 4636.7347 kcal/mol (4630.3635 without restraints) Performing minimization step: 3939. Total energy = 4636.0780 kcal/mol (4629.7082 without restraints) Performing minimization step: 3940. Total energy = 4635.4217 kcal/mol (4629.0534 without restraints) Performing minimization step: 3941. Total energy = 4634.7657 kcal/mol (4628.3988 without restraints) Performing minimization step: 3942. Total energy = 4634.1099 kcal/mol (4627.7443 without restraints) Performing minimization step: 3943. Total energy = 4633.4549 kcal/mol (4627.0909 without restraints) Performing minimization step: 3944. Total energy = 4632.8004 kcal/mol (4626.4379 without restraints) Performing minimization step: 3945. Total energy = 4632.1463 kcal/mol (4625.7852 without restraints) Performing minimization step: 3946. Total energy = 4631.4929 kcal/mol (4625.1332 without restraints) Performing minimization step: 3947. Total energy = 4630.8396 kcal/mol (4624.4814 without restraints) Performing minimization step: 3948. Total energy = 4630.1872 kcal/mol (4623.8305 without restraints) Performing minimization step: 3949. Total energy = 4629.5350 kcal/mol (4623.1797 without restraints) Performing minimization step: 3950. Total energy = 4628.8829 kcal/mol (4622.5291 without restraints) Performing minimization step: 3951. Total energy = 4628.2314 kcal/mol (4621.8791 without restraints) Performing minimization step: 3952. Total energy = 4627.5804 kcal/mol (4621.2294 without restraints) Performing minimization step: 3953. Total energy = 4626.9300 kcal/mol (4620.5805 without restraints) Performing minimization step: 3954. Total energy = 4626.2797 kcal/mol (4619.9316 without restraints) Performing minimization step: 3955. Total energy = 4625.6299 kcal/mol (4619.2833 without restraints) Performing minimization step: 3956. Total energy = 4624.9805 kcal/mol (4618.6353 without restraints) Performing minimization step: 3957. Total energy = 4624.3316 kcal/mol (4617.9878 without restraints) Performing minimization step: 3958. Total energy = 4623.6833 kcal/mol (4617.3411 without restraints) Performing minimization step: 3959. Total energy = 4623.0355 kcal/mol (4616.6947 without restraints) Performing minimization step: 3960. Total energy = 4622.3875 kcal/mol (4616.0481 without restraints) Performing minimization step: 3961. Total energy = 4621.7405 kcal/mol (4615.4026 without restraints) Performing minimization step: 3962. Total energy = 4621.0940 kcal/mol (4614.7575 without restraints) Performing minimization step: 3963. Total energy = 4620.4473 kcal/mol (4614.1123 without restraints) Performing minimization step: 3964. Total energy = 4619.8018 kcal/mol (4613.4682 without restraints) Performing minimization step: 3965. Total energy = 4619.1567 kcal/mol (4612.8246 without restraints) Performing minimization step: 3966. Total energy = 4618.5122 kcal/mol (4612.1814 without restraints) Performing minimization step: 3967. Total energy = 4617.8680 kcal/mol (4611.5388 without restraints) Performing minimization step: 3968. Total energy = 4617.2244 kcal/mol (4610.8966 without restraints) Performing minimization step: 3969. Total energy = 4616.5810 kcal/mol (4610.2546 without restraints) Performing minimization step: 3970. Total energy = 4615.9380 kcal/mol (4609.6131 without restraints) Performing minimization step: 3971. Total energy = 4615.2955 kcal/mol (4608.9720 without restraints) Performing minimization step: 3972. Total energy = 4614.6534 kcal/mol (4608.3313 without restraints) Performing minimization step: 3973. Total energy = 4614.0117 kcal/mol (4607.6911 without restraints) Performing minimization step: 3974. Total energy = 4613.3705 kcal/mol (4607.0513 without restraints) Performing minimization step: 3975. Total energy = 4612.7295 kcal/mol (4606.4118 without restraints) Performing minimization step: 3976. Total energy = 4612.0895 kcal/mol (4605.7733 without restraints) Performing minimization step: 3977. Total energy = 4611.4500 kcal/mol (4605.1353 without restraints) Performing minimization step: 3978. Total energy = 4610.8110 kcal/mol (4604.4976 without restraints) Performing minimization step: 3979. Total energy = 4610.1724 kcal/mol (4603.8606 without restraints) Performing minimization step: 3980. Total energy = 4609.5341 kcal/mol (4603.2236 without restraints) Performing minimization step: 3981. Total energy = 4608.8964 kcal/mol (4602.5875 without restraints) Performing minimization step: 3982. Total energy = 4608.2586 kcal/mol (4601.9510 without restraints) Performing minimization step: 3983. Total energy = 4607.6213 kcal/mol (4601.3152 without restraints) Performing minimization step: 3984. Total energy = 4606.9845 kcal/mol (4600.6798 without restraints) Performing minimization step: 3985. Total energy = 4606.3482 kcal/mol (4600.0449 without restraints) Performing minimization step: 3986. Total energy = 4605.7124 kcal/mol (4599.4105 without restraints) Performing minimization step: 3987. Total energy = 4605.0770 kcal/mol (4598.7766 without restraints) Performing minimization step: 3988. Total energy = 4604.4423 kcal/mol (4598.1434 without restraints) Performing minimization step: 3989. Total energy = 4603.8080 kcal/mol (4597.5104 without restraints) Performing minimization step: 3990. Total energy = 4603.1740 kcal/mol (4596.8781 without restraints) Performing minimization step: 3991. Total energy = 4602.5408 kcal/mol (4596.2462 without restraints) Performing minimization step: 3992. Total energy = 4601.9075 kcal/mol (4595.6143 without restraints) Performing minimization step: 3993. Total energy = 4601.2752 kcal/mol (4594.9835 without restraints) Performing minimization step: 3994. Total energy = 4600.6432 kcal/mol (4594.3529 without restraints) Performing minimization step: 3995. Total energy = 4600.0113 kcal/mol (4593.7224 without restraints) Performing minimization step: 3996. Total energy = 4599.3799 kcal/mol (4593.0925 without restraints) Performing minimization step: 3997. Total energy = 4598.7493 kcal/mol (4592.4633 without restraints) Performing minimization step: 3998. Total energy = 4598.1187 kcal/mol (4591.8341 without restraints) Performing minimization step: 3999. Total energy = 4597.4887 kcal/mol (4591.2056 without restraints) Performing minimization step: 4000. Total energy = 4596.8589 kcal/mol (4590.5772 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 4596.2295 kcal/mol (4589.9493 without restraints) Performing minimization step: 4002. Total energy = 4595.6011 kcal/mol (4589.3223 without restraints) Performing minimization step: 4003. Total energy = 4594.9734 kcal/mol (4588.6961 without restraints) Performing minimization step: 4004. Total energy = 4594.3454 kcal/mol (4588.0696 without restraints) Performing minimization step: 4005. Total energy = 4593.7179 kcal/mol (4587.4434 without restraints) Performing minimization step: 4006. Total energy = 4593.0911 kcal/mol (4586.8180 without restraints) Performing minimization step: 4007. Total energy = 4592.4646 kcal/mol (4586.1931 without restraints) Performing minimization step: 4008. Total energy = 4591.8384 kcal/mol (4585.5683 without restraints) Performing minimization step: 4009. Total energy = 4591.2126 kcal/mol (4584.9438 without restraints) Performing minimization step: 4010. Total energy = 4590.5870 kcal/mol (4584.3198 without restraints) Performing minimization step: 4011. Total energy = 4589.9625 kcal/mol (4583.6967 without restraints) Performing minimization step: 4012. Total energy = 4589.3385 kcal/mol (4583.0742 without restraints) Performing minimization step: 4013. Total energy = 4588.7148 kcal/mol (4582.4519 without restraints) Performing minimization step: 4014. Total energy = 4588.0912 kcal/mol (4581.8297 without restraints) Performing minimization step: 4015. Total energy = 4587.4679 kcal/mol (4581.2078 without restraints) Performing minimization step: 4016. Total energy = 4586.8450 kcal/mol (4580.5863 without restraints) Performing minimization step: 4017. Total energy = 4586.2225 kcal/mol (4579.9653 without restraints) Performing minimization step: 4018. Total energy = 4585.6005 kcal/mol (4579.3447 without restraints) Performing minimization step: 4019. Total energy = 4584.9789 kcal/mol (4578.7246 without restraints) Performing minimization step: 4020. Total energy = 4584.3576 kcal/mol (4578.1046 without restraints) Performing minimization step: 4021. Total energy = 4583.7367 kcal/mol (4577.4852 without restraints) Performing minimization step: 4022. Total energy = 4583.1164 kcal/mol (4576.8664 without restraints) Performing minimization step: 4023. Total energy = 4582.4966 kcal/mol (4576.2480 without restraints) Performing minimization step: 4024. Total energy = 4581.8771 kcal/mol (4575.6300 without restraints) Performing minimization step: 4025. Total energy = 4581.2582 kcal/mol (4575.0125 without restraints) Performing minimization step: 4026. Total energy = 4580.6405 kcal/mol (4574.3961 without restraints) Performing minimization step: 4027. Total energy = 4580.0222 kcal/mol (4573.7793 without restraints) Performing minimization step: 4028. Total energy = 4579.4044 kcal/mol (4573.1630 without restraints) Performing minimization step: 4029. Total energy = 4578.7870 kcal/mol (4572.5471 without restraints) Performing minimization step: 4030. Total energy = 4578.1702 kcal/mol (4571.9318 without restraints) Performing minimization step: 4031. Total energy = 4577.5541 kcal/mol (4571.3171 without restraints) Performing minimization step: 4032. Total energy = 4576.9381 kcal/mol (4570.7024 without restraints) Performing minimization step: 4033. Total energy = 4576.3224 kcal/mol (4570.0882 without restraints) Performing minimization step: 4034. Total energy = 4575.7072 kcal/mol (4569.4745 without restraints) Performing minimization step: 4035. Total energy = 4575.0929 kcal/mol (4568.8617 without restraints) Performing minimization step: 4036. Total energy = 4574.4796 kcal/mol (4568.2498 without restraints) Performing minimization step: 4037. Total energy = 4573.8664 kcal/mol (4567.6379 without restraints) Performing minimization step: 4038. Total energy = 4573.2524 kcal/mol (4567.0254 without restraints) Performing minimization step: 4039. Total energy = 4572.6394 kcal/mol (4566.4140 without restraints) Performing minimization step: 4040. Total energy = 4572.0266 kcal/mol (4565.8025 without restraints) Performing minimization step: 4041. Total energy = 4571.4146 kcal/mol (4565.1919 without restraints) Performing minimization step: 4042. Total energy = 4570.8034 kcal/mol (4564.5821 without restraints) Performing minimization step: 4043. Total energy = 4570.1923 kcal/mol (4563.9724 without restraints) Performing minimization step: 4044. Total energy = 4569.5810 kcal/mol (4563.3627 without restraints) Performing minimization step: 4045. Total energy = 4568.9706 kcal/mol (4562.7536 without restraints) Performing minimization step: 4046. Total energy = 4568.3604 kcal/mol (4562.1449 without restraints) Performing minimization step: 4047. Total energy = 4567.7507 kcal/mol (4561.5367 without restraints) Performing minimization step: 4048. Total energy = 4567.1416 kcal/mol (4560.9290 without restraints) Performing minimization step: 4049. Total energy = 4566.5329 kcal/mol (4560.3217 without restraints) Performing minimization step: 4050. Total energy = 4565.9246 kcal/mol (4559.7149 without restraints) Performing minimization step: 4051. Total energy = 4565.3167 kcal/mol (4559.1084 without restraints) Performing minimization step: 4052. Total energy = 4564.7090 kcal/mol (4558.5021 without restraints) Performing minimization step: 4053. Total energy = 4564.1018 kcal/mol (4557.8964 without restraints) Performing minimization step: 4054. Total energy = 4563.4951 kcal/mol (4557.2911 without restraints) Performing minimization step: 4055. Total energy = 4562.8887 kcal/mol (4556.6862 without restraints) Performing minimization step: 4056. Total energy = 4562.2832 kcal/mol (4556.0820 without restraints) Performing minimization step: 4057. Total energy = 4561.6775 kcal/mol (4555.4778 without restraints) Performing minimization step: 4058. Total energy = 4561.0725 kcal/mol (4554.8741 without restraints) Performing minimization step: 4059. Total energy = 4560.4678 kcal/mol (4554.2709 without restraints) Performing minimization step: 4060. Total energy = 4559.8635 kcal/mol (4553.6681 without restraints) Performing minimization step: 4061. Total energy = 4559.2597 kcal/mol (4553.0658 without restraints) Performing minimization step: 4062. Total energy = 4558.6564 kcal/mol (4552.4639 without restraints) Performing minimization step: 4063. Total energy = 4558.0536 kcal/mol (4551.8626 without restraints) Performing minimization step: 4064. Total energy = 4557.4514 kcal/mol (4551.2618 without restraints) Performing minimization step: 4065. Total energy = 4556.8491 kcal/mol (4550.6609 without restraints) Performing minimization step: 4066. Total energy = 4556.2472 kcal/mol (4550.0605 without restraints) Performing minimization step: 4067. Total energy = 4555.6460 kcal/mol (4549.4607 without restraints) Performing minimization step: 4068. Total energy = 4555.0450 kcal/mol (4548.8611 without restraints) Performing minimization step: 4069. Total energy = 4554.4447 kcal/mol (4548.2622 without restraints) Performing minimization step: 4070. Total energy = 4553.8446 kcal/mol (4547.6636 without restraints) Performing minimization step: 4071. Total energy = 4553.2448 kcal/mol (4547.0652 without restraints) Performing minimization step: 4072. Total energy = 4552.6454 kcal/mol (4546.4673 without restraints) Performing minimization step: 4073. Total energy = 4552.0470 kcal/mol (4545.8702 without restraints) Performing minimization step: 4074. Total energy = 4551.4483 kcal/mol (4545.2730 without restraints) Performing minimization step: 4075. Total energy = 4550.8501 kcal/mol (4544.6762 without restraints) Performing minimization step: 4076. Total energy = 4550.2523 kcal/mol (4544.0798 without restraints) Performing minimization step: 4077. Total energy = 4549.6553 kcal/mol (4543.4843 without restraints) Performing minimization step: 4078. Total energy = 4549.0583 kcal/mol (4542.8887 without restraints) Performing minimization step: 4079. Total energy = 4548.4617 kcal/mol (4542.2936 without restraints) Performing minimization step: 4080. Total energy = 4547.8655 kcal/mol (4541.6988 without restraints) Performing minimization step: 4081. Total energy = 4547.2704 kcal/mol (4541.1052 without restraints) Performing minimization step: 4082. Total energy = 4546.6748 kcal/mol (4540.5110 without restraints) Performing minimization step: 4083. Total energy = 4546.0800 kcal/mol (4539.9176 without restraints) Performing minimization step: 4084. Total energy = 4545.4857 kcal/mol (4539.3249 without restraints) Performing minimization step: 4085. Total energy = 4544.8916 kcal/mol (4538.7321 without restraints) Performing minimization step: 4086. Total energy = 4544.2979 kcal/mol (4538.1399 without restraints) Performing minimization step: 4087. Total energy = 4543.7050 kcal/mol (4537.5484 without restraints) Performing minimization step: 4088. Total energy = 4543.1122 kcal/mol (4536.9571 without restraints) Performing minimization step: 4089. Total energy = 4542.5198 kcal/mol (4536.3660 without restraints) Performing minimization step: 4090. Total energy = 4541.9279 kcal/mol (4535.7756 without restraints) Performing minimization step: 4091. Total energy = 4541.3362 kcal/mol (4535.1853 without restraints) Performing minimization step: 4092. Total energy = 4540.7455 kcal/mol (4534.5960 without restraints) Performing minimization step: 4093. Total energy = 4540.1545 kcal/mol (4534.0066 without restraints) Performing minimization step: 4094. Total energy = 4539.5642 kcal/mol (4533.4176 without restraints) Performing minimization step: 4095. Total energy = 4538.9741 kcal/mol (4532.8289 without restraints) Performing minimization step: 4096. Total energy = 4538.3843 kcal/mol (4532.2406 without restraints) Performing minimization step: 4097. Total energy = 4537.7954 kcal/mol (4531.6531 without restraints) Performing minimization step: 4098. Total energy = 4537.2067 kcal/mol (4531.0658 without restraints) Performing minimization step: 4099. Total energy = 4536.6183 kcal/mol (4530.4789 without restraints) Performing minimization step: 4100. Total energy = 4536.0308 kcal/mol (4529.8929 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 4535.4429 kcal/mol (4529.3065 without restraints) Performing minimization step: 4102. Total energy = 4534.8555 kcal/mol (4528.7204 without restraints) Performing minimization step: 4103. Total energy = 4534.2688 kcal/mol (4528.1352 without restraints) Performing minimization step: 4104. Total energy = 4533.6827 kcal/mol (4527.5505 without restraints) Performing minimization step: 4105. Total energy = 4533.0965 kcal/mol (4526.9657 without restraints) Performing minimization step: 4106. Total energy = 4532.5107 kcal/mol (4526.3814 without restraints) Performing minimization step: 4107. Total energy = 4531.9255 kcal/mol (4525.7976 without restraints) Performing minimization step: 4108. Total energy = 4531.3406 kcal/mol (4525.2141 without restraints) Performing minimization step: 4109. Total energy = 4530.7561 kcal/mol (4524.6310 without restraints) Performing minimization step: 4110. Total energy = 4530.1718 kcal/mol (4524.0482 without restraints) Performing minimization step: 4111. Total energy = 4529.5884 kcal/mol (4523.4662 without restraints) Performing minimization step: 4112. Total energy = 4529.0048 kcal/mol (4522.8840 without restraints) Performing minimization step: 4113. Total energy = 4528.4226 kcal/mol (4522.3033 without restraints) Performing minimization step: 4114. Total energy = 4527.8403 kcal/mol (4521.7226 without restraints) Performing minimization step: 4115. Total energy = 4527.2587 kcal/mol (4521.1422 without restraints) Performing minimization step: 4116. Total energy = 4526.6767 kcal/mol (4520.5618 without restraints) Performing minimization step: 4117. Total energy = 4526.0958 kcal/mol (4519.9822 without restraints) Performing minimization step: 4118. Total energy = 4525.5149 kcal/mol (4519.4028 without restraints) Performing minimization step: 4119. Total energy = 4524.9350 kcal/mol (4518.8244 without restraints) Performing minimization step: 4120. Total energy = 4524.3549 kcal/mol (4518.2457 without restraints) Performing minimization step: 4121. Total energy = 4523.7751 kcal/mol (4517.6673 without restraints) Performing minimization step: 4122. Total energy = 4523.1958 kcal/mol (4517.0894 without restraints) Performing minimization step: 4123. Total energy = 4522.6165 kcal/mol (4516.5115 without restraints) Performing minimization step: 4124. Total energy = 4522.0380 kcal/mol (4515.9345 without restraints) Performing minimization step: 4125. Total energy = 4521.4596 kcal/mol (4515.3575 without restraints) Performing minimization step: 4126. Total energy = 4520.8817 kcal/mol (4514.7812 without restraints) Performing minimization step: 4127. Total energy = 4520.3045 kcal/mol (4514.2053 without restraints) Performing minimization step: 4128. Total energy = 4519.7277 kcal/mol (4513.6299 without restraints) Performing minimization step: 4129. Total energy = 4519.1508 kcal/mol (4513.0545 without restraints) Performing minimization step: 4130. Total energy = 4518.5746 kcal/mol (4512.4797 without restraints) Performing minimization step: 4131. Total energy = 4517.9987 kcal/mol (4511.9053 without restraints) Performing minimization step: 4132. Total energy = 4517.4232 kcal/mol (4511.3311 without restraints) Performing minimization step: 4133. Total energy = 4516.8479 kcal/mol (4510.7573 without restraints) Performing minimization step: 4134. Total energy = 4516.2730 kcal/mol (4510.1839 without restraints) Performing minimization step: 4135. Total energy = 4515.6986 kcal/mol (4509.6108 without restraints) Performing minimization step: 4136. Total energy = 4515.1250 kcal/mol (4509.0390 without restraints) Performing minimization step: 4137. Total energy = 4514.5516 kcal/mol (4508.4667 without restraints) Performing minimization step: 4138. Total energy = 4513.9787 kcal/mol (4507.8952 without restraints) Performing minimization step: 4139. Total energy = 4513.4057 kcal/mol (4507.3237 without restraints) Performing minimization step: 4140. Total energy = 4512.8332 kcal/mol (4506.7527 without restraints) Performing minimization step: 4141. Total energy = 4512.2613 kcal/mol (4506.1823 without restraints) Performing minimization step: 4142. Total energy = 4511.6894 kcal/mol (4505.6117 without restraints) Performing minimization step: 4143. Total energy = 4511.1180 kcal/mol (4505.0417 without restraints) Performing minimization step: 4144. Total energy = 4510.5472 kcal/mol (4504.4724 without restraints) Performing minimization step: 4145. Total energy = 4509.9765 kcal/mol (4503.9032 without restraints) Performing minimization step: 4146. Total energy = 4509.4062 kcal/mol (4503.3343 without restraints) Performing minimization step: 4147. Total energy = 4508.8363 kcal/mol (4502.7658 without restraints) Performing minimization step: 4148. Total energy = 4508.2670 kcal/mol (4502.1979 without restraints) Performing minimization step: 4149. Total energy = 4507.6981 kcal/mol (4501.6305 without restraints) Performing minimization step: 4150. Total energy = 4507.1300 kcal/mol (4501.0638 without restraints) Performing minimization step: 4151. Total energy = 4506.5619 kcal/mol (4500.4972 without restraints) Performing minimization step: 4152. Total energy = 4505.9942 kcal/mol (4499.9311 without restraints) Performing minimization step: 4153. Total energy = 4505.4269 kcal/mol (4499.3650 without restraints) Performing minimization step: 4154. Total energy = 4504.8598 kcal/mol (4498.7993 without restraints) Performing minimization step: 4155. Total energy = 4504.2935 kcal/mol (4498.2345 without restraints) Performing minimization step: 4156. Total energy = 4503.7275 kcal/mol (4497.6701 without restraints) Performing minimization step: 4157. Total energy = 4503.1617 kcal/mol (4497.1056 without restraints) Performing minimization step: 4158. Total energy = 4502.5959 kcal/mol (4496.5412 without restraints) Performing minimization step: 4159. Total energy = 4502.0306 kcal/mol (4495.9773 without restraints) Performing minimization step: 4160. Total energy = 4501.4658 kcal/mol (4495.4139 without restraints) Performing minimization step: 4161. Total energy = 4500.9014 kcal/mol (4494.8510 without restraints) Performing minimization step: 4162. Total energy = 4500.3372 kcal/mol (4494.2882 without restraints) Performing minimization step: 4163. Total energy = 4499.7733 kcal/mol (4493.7257 without restraints) Performing minimization step: 4164. Total energy = 4499.2097 kcal/mol (4493.1636 without restraints) Performing minimization step: 4165. Total energy = 4498.6466 kcal/mol (4492.6019 without restraints) Performing minimization step: 4166. Total energy = 4498.0838 kcal/mol (4492.0406 without restraints) Performing minimization step: 4167. Total energy = 4497.5215 kcal/mol (4491.4797 without restraints) Performing minimization step: 4168. Total energy = 4496.9597 kcal/mol (4490.9194 without restraints) Performing minimization step: 4169. Total energy = 4496.3980 kcal/mol (4490.3591 without restraints) Performing minimization step: 4170. Total energy = 4495.8367 kcal/mol (4489.7993 without restraints) Performing minimization step: 4171. Total energy = 4495.2760 kcal/mol (4489.2400 without restraints) Performing minimization step: 4172. Total energy = 4494.7157 kcal/mol (4488.6812 without restraints) Performing minimization step: 4173. Total energy = 4494.1566 kcal/mol (4488.1235 without restraints) Performing minimization step: 4174. Total energy = 4493.5968 kcal/mol (4487.5650 without restraints) Performing minimization step: 4175. Total energy = 4493.0373 kcal/mol (4487.0070 without restraints) Performing minimization step: 4176. Total energy = 4492.4784 kcal/mol (4486.4495 without restraints) Performing minimization step: 4177. Total energy = 4491.9200 kcal/mol (4485.8926 without restraints) Performing minimization step: 4178. Total energy = 4491.3623 kcal/mol (4485.3363 without restraints) Performing minimization step: 4179. Total energy = 4490.8044 kcal/mol (4484.7798 without restraints) Performing minimization step: 4180. Total energy = 4490.2470 kcal/mol (4484.2239 without restraints) Performing minimization step: 4181. Total energy = 4489.6897 kcal/mol (4483.6681 without restraints) Performing minimization step: 4182. Total energy = 4489.1327 kcal/mol (4483.1123 without restraints) Performing minimization step: 4183. Total energy = 4488.5752 kcal/mol (4482.5563 without restraints) Performing minimization step: 4184. Total energy = 4488.0192 kcal/mol (4482.0018 without restraints) Performing minimization step: 4185. Total energy = 4487.4634 kcal/mol (4481.4475 without restraints) Performing minimization step: 4186. Total energy = 4486.9087 kcal/mol (4480.8942 without restraints) Performing minimization step: 4187. Total energy = 4486.3538 kcal/mol (4480.3408 without restraints) Performing minimization step: 4188. Total energy = 4485.7993 kcal/mol (4479.7878 without restraints) Performing minimization step: 4189. Total energy = 4485.2451 kcal/mol (4479.2349 without restraints) Performing minimization step: 4190. Total energy = 4484.6910 kcal/mol (4478.6824 without restraints) Performing minimization step: 4191. Total energy = 4484.1375 kcal/mol (4478.1302 without restraints) Performing minimization step: 4192. Total energy = 4483.5844 kcal/mol (4477.5786 without restraints) Performing minimization step: 4193. Total energy = 4483.0317 kcal/mol (4477.0273 without restraints) Performing minimization step: 4194. Total energy = 4482.4794 kcal/mol (4476.4765 without restraints) Performing minimization step: 4195. Total energy = 4481.9273 kcal/mol (4475.9257 without restraints) Performing minimization step: 4196. Total energy = 4481.3755 kcal/mol (4475.3754 without restraints) Performing minimization step: 4197. Total energy = 4480.8244 kcal/mol (4474.8258 without restraints) Performing minimization step: 4198. Total energy = 4480.2734 kcal/mol (4474.2763 without restraints) Performing minimization step: 4199. Total energy = 4479.7230 kcal/mol (4473.7271 without restraints) Performing minimization step: 4200. Total energy = 4479.1725 kcal/mol (4473.1781 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 4478.6224 kcal/mol (4472.6294 without restraints) Performing minimization step: 4202. Total energy = 4478.0729 kcal/mol (4472.0816 without restraints) Performing minimization step: 4203. Total energy = 4477.5237 kcal/mol (4471.5337 without restraints) Performing minimization step: 4204. Total energy = 4476.9748 kcal/mol (4470.9863 without restraints) Performing minimization step: 4205. Total energy = 4476.4267 kcal/mol (4470.4395 without restraints) Performing minimization step: 4206. Total energy = 4475.8785 kcal/mol (4469.8928 without restraints) Performing minimization step: 4207. Total energy = 4475.3309 kcal/mol (4469.3469 without restraints) Performing minimization step: 4208. Total energy = 4474.7840 kcal/mol (4468.8012 without restraints) Performing minimization step: 4209. Total energy = 4474.2371 kcal/mol (4468.2557 without restraints) Performing minimization step: 4210. Total energy = 4473.6906 kcal/mol (4467.7108 without restraints) Performing minimization step: 4211. Total energy = 4473.1443 kcal/mol (4467.1658 without restraints) Performing minimization step: 4212. Total energy = 4472.5986 kcal/mol (4466.6216 without restraints) Performing minimization step: 4213. Total energy = 4472.0529 kcal/mol (4466.0773 without restraints) Performing minimization step: 4214. Total energy = 4471.5078 kcal/mol (4465.5336 without restraints) Performing minimization step: 4215. Total energy = 4470.9632 kcal/mol (4464.9904 without restraints) Performing minimization step: 4216. Total energy = 4470.4187 kcal/mol (4464.4474 without restraints) Performing minimization step: 4217. Total energy = 4469.8746 kcal/mol (4463.9047 without restraints) Performing minimization step: 4218. Total energy = 4469.3307 kcal/mol (4463.3622 without restraints) Performing minimization step: 4219. Total energy = 4468.7869 kcal/mol (4462.8199 without restraints) Performing minimization step: 4220. Total energy = 4468.2441 kcal/mol (4462.2786 without restraints) Performing minimization step: 4221. Total energy = 4467.7018 kcal/mol (4461.7378 without restraints) Performing minimization step: 4222. Total energy = 4467.1591 kcal/mol (4461.1965 without restraints) Performing minimization step: 4223. Total energy = 4466.6170 kcal/mol (4460.6558 without restraints) Performing minimization step: 4224. Total energy = 4466.0750 kcal/mol (4460.1152 without restraints) Performing minimization step: 4225. Total energy = 4465.5338 kcal/mol (4459.5755 without restraints) Performing minimization step: 4226. Total energy = 4464.9925 kcal/mol (4459.0356 without restraints) Performing minimization step: 4227. Total energy = 4464.4517 kcal/mol (4458.4962 without restraints) Performing minimization step: 4228. Total energy = 4463.9110 kcal/mol (4457.9570 without restraints) Performing minimization step: 4229. Total energy = 4463.3710 kcal/mol (4457.4185 without restraints) Performing minimization step: 4230. Total energy = 4462.8313 kcal/mol (4456.8801 without restraints) Performing minimization step: 4231. Total energy = 4462.2919 kcal/mol (4456.3422 without restraints) Performing minimization step: 4232. Total energy = 4461.7531 kcal/mol (4455.8049 without restraints) Performing minimization step: 4233. Total energy = 4461.2144 kcal/mol (4455.2676 without restraints) Performing minimization step: 4234. Total energy = 4460.6766 kcal/mol (4454.7315 without restraints) Performing minimization step: 4235. Total energy = 4460.1386 kcal/mol (4454.1947 without restraints) Performing minimization step: 4236. Total energy = 4459.6012 kcal/mol (4453.6588 without restraints) Performing minimization step: 4237. Total energy = 4459.0641 kcal/mol (4453.1229 without restraints) Performing minimization step: 4238. Total energy = 4458.5273 kcal/mol (4452.5877 without restraints) Performing minimization step: 4239. Total energy = 4457.9910 kcal/mol (4452.0528 without restraints) Performing minimization step: 4240. Total energy = 4457.4548 kcal/mol (4451.5181 without restraints) Performing minimization step: 4241. Total energy = 4456.9190 kcal/mol (4450.9837 without restraints) Performing minimization step: 4242. Total energy = 4456.3834 kcal/mol (4450.4496 without restraints) Performing minimization step: 4243. Total energy = 4455.8484 kcal/mol (4449.9160 without restraints) Performing minimization step: 4244. Total energy = 4455.3135 kcal/mol (4449.3826 without restraints) Performing minimization step: 4245. Total energy = 4454.7788 kcal/mol (4448.8493 without restraints) Performing minimization step: 4246. Total energy = 4454.2450 kcal/mol (4448.3170 without restraints) Performing minimization step: 4247. Total energy = 4453.7115 kcal/mol (4447.7850 without restraints) Performing minimization step: 4248. Total energy = 4453.1783 kcal/mol (4447.2531 without restraints) Performing minimization step: 4249. Total energy = 4452.6455 kcal/mol (4446.7217 without restraints) Performing minimization step: 4250. Total energy = 4452.1128 kcal/mol (4446.1906 without restraints) Performing minimization step: 4251. Total energy = 4451.5804 kcal/mol (4445.6595 without restraints) Performing minimization step: 4252. Total energy = 4451.0487 kcal/mol (4445.1295 without restraints) Performing minimization step: 4253. Total energy = 4450.5169 kcal/mol (4444.5990 without restraints) Performing minimization step: 4254. Total energy = 4449.9858 kcal/mol (4444.0694 without restraints) Performing minimization step: 4255. Total energy = 4449.4542 kcal/mol (4443.5391 without restraints) Performing minimization step: 4256. Total energy = 4448.9236 kcal/mol (4443.0100 without restraints) Performing minimization step: 4257. Total energy = 4448.3932 kcal/mol (4442.4810 without restraints) Performing minimization step: 4258. Total energy = 4447.8633 kcal/mol (4441.9526 without restraints) Performing minimization step: 4259. Total energy = 4447.3336 kcal/mol (4441.4243 without restraints) Performing minimization step: 4260. Total energy = 4446.8042 kcal/mol (4440.8964 without restraints) Performing minimization step: 4261. Total energy = 4446.2754 kcal/mol (4440.3691 without restraints) Performing minimization step: 4262. Total energy = 4445.7467 kcal/mol (4439.8418 without restraints) Performing minimization step: 4263. Total energy = 4445.2187 kcal/mol (4439.3152 without restraints) Performing minimization step: 4264. Total energy = 4444.6916 kcal/mol (4438.7895 without restraints) Performing minimization step: 4265. Total energy = 4444.1639 kcal/mol (4438.2633 without restraints) Performing minimization step: 4266. Total energy = 4443.6367 kcal/mol (4437.7376 without restraints) Performing minimization step: 4267. Total energy = 4443.1102 kcal/mol (4437.2125 without restraints) Performing minimization step: 4268. Total energy = 4442.5835 kcal/mol (4436.6872 without restraints) Performing minimization step: 4269. Total energy = 4442.0572 kcal/mol (4436.1625 without restraints) Performing minimization step: 4270. Total energy = 4441.5312 kcal/mol (4435.6379 without restraints) Performing minimization step: 4271. Total energy = 4441.0056 kcal/mol (4435.1137 without restraints) Performing minimization step: 4272. Total energy = 4440.4808 kcal/mol (4434.5905 without restraints) Performing minimization step: 4273. Total energy = 4439.9560 kcal/mol (4434.0670 without restraints) Performing minimization step: 4274. Total energy = 4439.4314 kcal/mol (4433.5438 without restraints) Performing minimization step: 4275. Total energy = 4438.9073 kcal/mol (4433.0211 without restraints) Performing minimization step: 4276. Total energy = 4438.3833 kcal/mol (4432.4986 without restraints) Performing minimization step: 4277. Total energy = 4437.8598 kcal/mol (4431.9765 without restraints) Performing minimization step: 4278. Total energy = 4437.3365 kcal/mol (4431.4548 without restraints) Performing minimization step: 4279. Total energy = 4436.8136 kcal/mol (4430.9332 without restraints) Performing minimization step: 4280. Total energy = 4436.2911 kcal/mol (4430.4124 without restraints) Performing minimization step: 4281. Total energy = 4435.7687 kcal/mol (4429.8912 without restraints) Performing minimization step: 4282. Total energy = 4435.2466 kcal/mol (4429.3706 without restraints) Performing minimization step: 4283. Total energy = 4434.7249 kcal/mol (4428.8503 without restraints) Performing minimization step: 4284. Total energy = 4434.2031 kcal/mol (4428.3300 without restraints) Performing minimization step: 4285. Total energy = 4433.6821 kcal/mol (4427.8104 without restraints) Performing minimization step: 4286. Total energy = 4433.1614 kcal/mol (4427.2912 without restraints) Performing minimization step: 4287. Total energy = 4432.6412 kcal/mol (4426.7724 without restraints) Performing minimization step: 4288. Total energy = 4432.1215 kcal/mol (4426.2542 without restraints) Performing minimization step: 4289. Total energy = 4431.6019 kcal/mol (4425.7360 without restraints) Performing minimization step: 4290. Total energy = 4431.0824 kcal/mol (4425.2180 without restraints) Performing minimization step: 4291. Total energy = 4430.5633 kcal/mol (4424.7003 without restraints) Performing minimization step: 4292. Total energy = 4430.0444 kcal/mol (4424.1829 without restraints) Performing minimization step: 4293. Total energy = 4429.5259 kcal/mol (4423.6659 without restraints) Performing minimization step: 4294. Total energy = 4429.0081 kcal/mol (4423.1494 without restraints) Performing minimization step: 4295. Total energy = 4428.4904 kcal/mol (4422.6332 without restraints) Performing minimization step: 4296. Total energy = 4427.9732 kcal/mol (4422.1175 without restraints) Performing minimization step: 4297. Total energy = 4427.4559 kcal/mol (4421.6016 without restraints) Performing minimization step: 4298. Total energy = 4426.9390 kcal/mol (4421.0862 without restraints) Performing minimization step: 4299. Total energy = 4426.4228 kcal/mol (4420.5714 without restraints) Performing minimization step: 4300. Total energy = 4425.9066 kcal/mol (4420.0567 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 4425.3914 kcal/mol (4419.5429 without restraints) Performing minimization step: 4302. Total energy = 4424.8759 kcal/mol (4419.0289 without restraints) Performing minimization step: 4303. Total energy = 4424.3607 kcal/mol (4418.5151 without restraints) Performing minimization step: 4304. Total energy = 4423.8462 kcal/mol (4418.0021 without restraints) Performing minimization step: 4305. Total energy = 4423.3314 kcal/mol (4417.4888 without restraints) Performing minimization step: 4306. Total energy = 4422.8174 kcal/mol (4416.9762 without restraints) Performing minimization step: 4307. Total energy = 4422.3037 kcal/mol (4416.4639 without restraints) Performing minimization step: 4308. Total energy = 4421.7899 kcal/mol (4415.9516 without restraints) Performing minimization step: 4309. Total energy = 4421.2768 kcal/mol (4415.4400 without restraints) Performing minimization step: 4310. Total energy = 4420.7639 kcal/mol (4414.9285 without restraints) Performing minimization step: 4311. Total energy = 4420.2512 kcal/mol (4414.4172 without restraints) Performing minimization step: 4312. Total energy = 4419.7388 kcal/mol (4413.9063 without restraints) Performing minimization step: 4313. Total energy = 4419.2274 kcal/mol (4413.3964 without restraints) Performing minimization step: 4314. Total energy = 4418.7163 kcal/mol (4412.8867 without restraints) Performing minimization step: 4315. Total energy = 4418.2049 kcal/mol (4412.3768 without restraints) Performing minimization step: 4316. Total energy = 4417.6939 kcal/mol (4411.8672 without restraints) Performing minimization step: 4317. Total energy = 4417.1834 kcal/mol (4411.3581 without restraints) Performing minimization step: 4318. Total energy = 4416.6735 kcal/mol (4410.8497 without restraints) Performing minimization step: 4319. Total energy = 4416.1637 kcal/mol (4410.3415 without restraints) Performing minimization step: 4320. Total energy = 4415.6541 kcal/mol (4409.8332 without restraints) Performing minimization step: 4321. Total energy = 4415.1448 kcal/mol (4409.3254 without restraints) Performing minimization step: 4322. Total energy = 4414.6356 kcal/mol (4408.8177 without restraints) Performing minimization step: 4323. Total energy = 4414.1268 kcal/mol (4408.3103 without restraints) Performing minimization step: 4324. Total energy = 4413.6185 kcal/mol (4407.8036 without restraints) Performing minimization step: 4325. Total energy = 4413.1108 kcal/mol (4407.2972 without restraints) Performing minimization step: 4326. Total energy = 4412.6032 kcal/mol (4406.7910 without restraints) Performing minimization step: 4327. Total energy = 4412.0959 kcal/mol (4406.2853 without restraints) Performing minimization step: 4328. Total energy = 4411.5889 kcal/mol (4405.7797 without restraints) Performing minimization step: 4329. Total energy = 4411.0827 kcal/mol (4405.2750 without restraints) Performing minimization step: 4330. Total energy = 4410.5761 kcal/mol (4404.7698 without restraints) Performing minimization step: 4331. Total energy = 4410.0700 kcal/mol (4404.2652 without restraints) Performing minimization step: 4332. Total energy = 4409.5644 kcal/mol (4403.7611 without restraints) Performing minimization step: 4333. Total energy = 4409.0594 kcal/mol (4403.2576 without restraints) Performing minimization step: 4334. Total energy = 4408.5549 kcal/mol (4402.7544 without restraints) Performing minimization step: 4335. Total energy = 4408.0500 kcal/mol (4402.2509 without restraints) Performing minimization step: 4336. Total energy = 4407.5451 kcal/mol (4401.7475 without restraints) Performing minimization step: 4337. Total energy = 4407.0408 kcal/mol (4401.2447 without restraints) Performing minimization step: 4338. Total energy = 4406.5371 kcal/mol (4400.7424 without restraints) Performing minimization step: 4339. Total energy = 4406.0330 kcal/mol (4400.2398 without restraints) Performing minimization step: 4340. Total energy = 4405.5296 kcal/mol (4399.7380 without restraints) Performing minimization step: 4341. Total energy = 4405.0264 kcal/mol (4399.2362 without restraints) Performing minimization step: 4342. Total energy = 4404.5240 kcal/mol (4398.7354 without restraints) Performing minimization step: 4343. Total energy = 4404.0216 kcal/mol (4398.2343 without restraints) Performing minimization step: 4344. Total energy = 4403.5199 kcal/mol (4397.7341 without restraints) Performing minimization step: 4345. Total energy = 4403.0183 kcal/mol (4397.2339 without restraints) Performing minimization step: 4346. Total energy = 4402.5169 kcal/mol (4396.7340 without restraints) Performing minimization step: 4347. Total energy = 4402.0164 kcal/mol (4396.2349 without restraints) Performing minimization step: 4348. Total energy = 4401.5155 kcal/mol (4395.7354 without restraints) Performing minimization step: 4349. Total energy = 4401.0148 kcal/mol (4395.2363 without restraints) Performing minimization step: 4350. Total energy = 4400.5147 kcal/mol (4394.7376 without restraints) Performing minimization step: 4351. Total energy = 4400.0147 kcal/mol (4394.2391 without restraints) Performing minimization step: 4352. Total energy = 4399.5152 kcal/mol (4393.7411 without restraints) Performing minimization step: 4353. Total energy = 4399.0164 kcal/mol (4393.2436 without restraints) Performing minimization step: 4354. Total energy = 4398.5177 kcal/mol (4392.7464 without restraints) Performing minimization step: 4355. Total energy = 4398.0196 kcal/mol (4392.2498 without restraints) Performing minimization step: 4356. Total energy = 4397.5209 kcal/mol (4391.7526 without restraints) Performing minimization step: 4357. Total energy = 4397.0229 kcal/mol (4391.2560 without restraints) Performing minimization step: 4358. Total energy = 4396.5251 kcal/mol (4390.7597 without restraints) Performing minimization step: 4359. Total energy = 4396.0280 kcal/mol (4390.2640 without restraints) Performing minimization step: 4360. Total energy = 4395.5308 kcal/mol (4389.7684 without restraints) Performing minimization step: 4361. Total energy = 4395.0340 kcal/mol (4389.2729 without restraints) Performing minimization step: 4362. Total energy = 4394.5376 kcal/mol (4388.7781 without restraints) Performing minimization step: 4363. Total energy = 4394.0413 kcal/mol (4388.2832 without restraints) Performing minimization step: 4364. Total energy = 4393.5454 kcal/mol (4387.7888 without restraints) Performing minimization step: 4365. Total energy = 4393.0497 kcal/mol (4387.2946 without restraints) Performing minimization step: 4366. Total energy = 4392.5547 kcal/mol (4386.8011 without restraints) Performing minimization step: 4367. Total energy = 4392.0599 kcal/mol (4386.3077 without restraints) Performing minimization step: 4368. Total energy = 4391.5654 kcal/mol (4385.8147 without restraints) Performing minimization step: 4369. Total energy = 4391.0711 kcal/mol (4385.3219 without restraints) Performing minimization step: 4370. Total energy = 4390.5770 kcal/mol (4384.8292 without restraints) Performing minimization step: 4371. Total energy = 4390.0830 kcal/mol (4384.3365 without restraints) Performing minimization step: 4372. Total energy = 4389.5894 kcal/mol (4383.8445 without restraints) Performing minimization step: 4373. Total energy = 4389.0961 kcal/mol (4383.3527 without restraints) Performing minimization step: 4374. Total energy = 4388.6029 kcal/mol (4382.8609 without restraints) Performing minimization step: 4375. Total energy = 4388.1107 kcal/mol (4382.3702 without restraints) Performing minimization step: 4376. Total energy = 4387.6185 kcal/mol (4381.8796 without restraints) Performing minimization step: 4377. Total energy = 4387.1266 kcal/mol (4381.3890 without restraints) Performing minimization step: 4378. Total energy = 4386.6346 kcal/mol (4380.8985 without restraints) Performing minimization step: 4379. Total energy = 4386.1434 kcal/mol (4380.4087 without restraints) Performing minimization step: 4380. Total energy = 4385.6520 kcal/mol (4379.9188 without restraints) Performing minimization step: 4381. Total energy = 4385.1613 kcal/mol (4379.4296 without restraints) Performing minimization step: 4382. Total energy = 4384.6708 kcal/mol (4378.9405 without restraints) Performing minimization step: 4383. Total energy = 4384.1804 kcal/mol (4378.4515 without restraints) Performing minimization step: 4384. Total energy = 4383.6907 kcal/mol (4377.9634 without restraints) Performing minimization step: 4385. Total energy = 4383.2008 kcal/mol (4377.4749 without restraints) Performing minimization step: 4386. Total energy = 4382.7116 kcal/mol (4376.9872 without restraints) Performing minimization step: 4387. Total energy = 4382.2225 kcal/mol (4376.4996 without restraints) Performing minimization step: 4388. Total energy = 4381.7343 kcal/mol (4376.0129 without restraints) Performing minimization step: 4389. Total energy = 4381.2460 kcal/mol (4375.5259 without restraints) Performing minimization step: 4390. Total energy = 4380.7577 kcal/mol (4375.0392 without restraints) Performing minimization step: 4391. Total energy = 4380.2705 kcal/mol (4374.5535 without restraints) Performing minimization step: 4392. Total energy = 4379.7833 kcal/mol (4374.0678 without restraints) Performing minimization step: 4393. Total energy = 4379.2961 kcal/mol (4373.5822 without restraints) Performing minimization step: 4394. Total energy = 4378.8093 kcal/mol (4373.0967 without restraints) Performing minimization step: 4395. Total energy = 4378.3230 kcal/mol (4372.6119 without restraints) Performing minimization step: 4396. Total energy = 4377.8372 kcal/mol (4372.1276 without restraints) Performing minimization step: 4397. Total energy = 4377.3511 kcal/mol (4371.6429 without restraints) Performing minimization step: 4398. Total energy = 4376.8657 kcal/mol (4371.1590 without restraints) Performing minimization step: 4399. Total energy = 4376.3804 kcal/mol (4370.6752 without restraints) Performing minimization step: 4400. Total energy = 4375.8954 kcal/mol (4370.1917 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 4375.4105 kcal/mol (4369.7082 without restraints) Performing minimization step: 4402. Total energy = 4374.9259 kcal/mol (4369.2251 without restraints) Performing minimization step: 4403. Total energy = 4374.4414 kcal/mol (4368.7420 without restraints) Performing minimization step: 4404. Total energy = 4373.9578 kcal/mol (4368.2601 without restraints) Performing minimization step: 4405. Total energy = 4373.4742 kcal/mol (4367.7778 without restraints) Performing minimization step: 4406. Total energy = 4372.9910 kcal/mol (4367.2961 without restraints) Performing minimization step: 4407. Total energy = 4372.5078 kcal/mol (4366.8144 without restraints) Performing minimization step: 4408. Total energy = 4372.0252 kcal/mol (4366.3334 without restraints) Performing minimization step: 4409. Total energy = 4371.5430 kcal/mol (4365.8525 without restraints) Performing minimization step: 4410. Total energy = 4371.0608 kcal/mol (4365.3718 without restraints) Performing minimization step: 4411. Total energy = 4370.5791 kcal/mol (4364.8915 without restraints) Performing minimization step: 4412. Total energy = 4370.0975 kcal/mol (4364.4115 without restraints) Performing minimization step: 4413. Total energy = 4369.6162 kcal/mol (4363.9316 without restraints) Performing minimization step: 4414. Total energy = 4369.1351 kcal/mol (4363.4521 without restraints) Performing minimization step: 4415. Total energy = 4368.6546 kcal/mol (4362.9730 without restraints) Performing minimization step: 4416. Total energy = 4368.1743 kcal/mol (4362.4941 without restraints) Performing minimization step: 4417. Total energy = 4367.6943 kcal/mol (4362.0159 without restraints) Performing minimization step: 4418. Total energy = 4367.2148 kcal/mol (4361.5376 without restraints) Performing minimization step: 4419. Total energy = 4366.7350 kcal/mol (4361.0592 without restraints) Performing minimization step: 4420. Total energy = 4366.2556 kcal/mol (4360.5814 without restraints) Performing minimization step: 4421. Total energy = 4365.7764 kcal/mol (4360.1034 without restraints) Performing minimization step: 4422. Total energy = 4365.2979 kcal/mol (4359.6267 without restraints) Performing minimization step: 4423. Total energy = 4364.8198 kcal/mol (4359.1500 without restraints) Performing minimization step: 4424. Total energy = 4364.3417 kcal/mol (4358.6733 without restraints) Performing minimization step: 4425. Total energy = 4363.8639 kcal/mol (4358.1971 without restraints) Performing minimization step: 4426. Total energy = 4363.3871 kcal/mol (4357.7217 without restraints) Performing minimization step: 4427. Total energy = 4362.9096 kcal/mol (4357.2457 without restraints) Performing minimization step: 4428. Total energy = 4362.4326 kcal/mol (4356.7702 without restraints) Performing minimization step: 4429. Total energy = 4361.9561 kcal/mol (4356.2953 without restraints) Performing minimization step: 4430. Total energy = 4361.4799 kcal/mol (4355.8204 without restraints) Performing minimization step: 4431. Total energy = 4361.0040 kcal/mol (4355.3461 without restraints) Performing minimization step: 4432. Total energy = 4360.5281 kcal/mol (4354.8715 without restraints) Performing minimization step: 4433. Total energy = 4360.0524 kcal/mol (4354.3974 without restraints) Performing minimization step: 4434. Total energy = 4359.5772 kcal/mol (4353.9236 without restraints) Performing minimization step: 4435. Total energy = 4359.1027 kcal/mol (4353.4507 without restraints) Performing minimization step: 4436. Total energy = 4358.6283 kcal/mol (4352.9777 without restraints) Performing minimization step: 4437. Total energy = 4358.1541 kcal/mol (4352.5050 without restraints) Performing minimization step: 4438. Total energy = 4357.6798 kcal/mol (4352.0321 without restraints) Performing minimization step: 4439. Total energy = 4357.2062 kcal/mol (4351.5602 without restraints) Performing minimization step: 4440. Total energy = 4356.7328 kcal/mol (4351.0882 without restraints) Performing minimization step: 4441. Total energy = 4356.2595 kcal/mol (4350.6164 without restraints) Performing minimization step: 4442. Total energy = 4355.7867 kcal/mol (4350.1450 without restraints) Performing minimization step: 4443. Total energy = 4355.3141 kcal/mol (4349.6740 without restraints) Performing minimization step: 4444. Total energy = 4354.8419 kcal/mol (4349.2032 without restraints) Performing minimization step: 4445. Total energy = 4354.3699 kcal/mol (4348.7328 without restraints) Performing minimization step: 4446. Total energy = 4353.8981 kcal/mol (4348.2624 without restraints) Performing minimization step: 4447. Total energy = 4353.4268 kcal/mol (4347.7926 without restraints) Performing minimization step: 4448. Total energy = 4352.9556 kcal/mol (4347.3229 without restraints) Performing minimization step: 4449. Total energy = 4352.4847 kcal/mol (4346.8535 without restraints) Performing minimization step: 4450. Total energy = 4352.0141 kcal/mol (4346.3845 without restraints) Performing minimization step: 4451. Total energy = 4351.5444 kcal/mol (4345.9161 without restraints) Performing minimization step: 4452. Total energy = 4351.0743 kcal/mol (4345.4476 without restraints) Performing minimization step: 4453. Total energy = 4350.6049 kcal/mol (4344.9797 without restraints) Performing minimization step: 4454. Total energy = 4350.1351 kcal/mol (4344.5113 without restraints) Performing minimization step: 4455. Total energy = 4349.6657 kcal/mol (4344.0434 without restraints) Performing minimization step: 4456. Total energy = 4349.1970 kcal/mol (4343.5763 without restraints) Performing minimization step: 4457. Total energy = 4348.7289 kcal/mol (4343.1097 without restraints) Performing minimization step: 4458. Total energy = 4348.2605 kcal/mol (4342.6427 without restraints) Performing minimization step: 4459. Total energy = 4347.7925 kcal/mol (4342.1761 without restraints) Performing minimization step: 4460. Total energy = 4347.3256 kcal/mol (4341.7107 without restraints) Performing minimization step: 4461. Total energy = 4346.8579 kcal/mol (4341.2444 without restraints) Performing minimization step: 4462. Total energy = 4346.3905 kcal/mol (4340.7787 without restraints) Performing minimization step: 4463. Total energy = 4345.9238 kcal/mol (4340.3135 without restraints) Performing minimization step: 4464. Total energy = 4345.4575 kcal/mol (4339.8486 without restraints) Performing minimization step: 4465. Total energy = 4344.9909 kcal/mol (4339.3835 without restraints) Performing minimization step: 4466. Total energy = 4344.5247 kcal/mol (4338.9188 without restraints) Performing minimization step: 4467. Total energy = 4344.0590 kcal/mol (4338.4547 without restraints) Performing minimization step: 4468. Total energy = 4343.5936 kcal/mol (4337.9907 without restraints) Performing minimization step: 4469. Total energy = 4343.1281 kcal/mol (4337.5267 without restraints) Performing minimization step: 4470. Total energy = 4342.6634 kcal/mol (4337.0634 without restraints) Performing minimization step: 4471. Total energy = 4342.1987 kcal/mol (4336.6002 without restraints) Performing minimization step: 4472. Total energy = 4341.7341 kcal/mol (4336.1372 without restraints) Performing minimization step: 4473. Total energy = 4341.2698 kcal/mol (4335.6744 without restraints) Performing minimization step: 4474. Total energy = 4340.8059 kcal/mol (4335.2121 without restraints) Performing minimization step: 4475. Total energy = 4340.3425 kcal/mol (4334.7501 without restraints) Performing minimization step: 4476. Total energy = 4339.8792 kcal/mol (4334.2885 without restraints) Performing minimization step: 4477. Total energy = 4339.4165 kcal/mol (4333.8270 without restraints) Performing minimization step: 4478. Total energy = 4338.9537 kcal/mol (4333.3658 without restraints) Performing minimization step: 4479. Total energy = 4338.4915 kcal/mol (4332.9051 without restraints) Performing minimization step: 4480. Total energy = 4338.0298 kcal/mol (4332.4447 without restraints) Performing minimization step: 4481. Total energy = 4337.5677 kcal/mol (4331.9843 without restraints) Performing minimization step: 4482. Total energy = 4337.1062 kcal/mol (4331.5242 without restraints) Performing minimization step: 4483. Total energy = 4336.6446 kcal/mol (4331.0641 without restraints) Performing minimization step: 4484. Total energy = 4336.1834 kcal/mol (4330.6046 without restraints) Performing minimization step: 4485. Total energy = 4335.7228 kcal/mol (4330.1453 without restraints) Performing minimization step: 4486. Total energy = 4335.2623 kcal/mol (4329.6863 without restraints) Performing minimization step: 4487. Total energy = 4334.8018 kcal/mol (4329.2274 without restraints) Performing minimization step: 4488. Total energy = 4334.3418 kcal/mol (4328.7688 without restraints) Performing minimization step: 4489. Total energy = 4333.8822 kcal/mol (4328.3108 without restraints) Performing minimization step: 4490. Total energy = 4333.4230 kcal/mol (4327.8531 without restraints) Performing minimization step: 4491. Total energy = 4332.9643 kcal/mol (4327.3959 without restraints) Performing minimization step: 4492. Total energy = 4332.5055 kcal/mol (4326.9386 without restraints) Performing minimization step: 4493. Total energy = 4332.0475 kcal/mol (4326.4820 without restraints) Performing minimization step: 4494. Total energy = 4331.5892 kcal/mol (4326.0253 without restraints) Performing minimization step: 4495. Total energy = 4331.1312 kcal/mol (4325.5687 without restraints) Performing minimization step: 4496. Total energy = 4330.6734 kcal/mol (4325.1125 without restraints) Performing minimization step: 4497. Total energy = 4330.2157 kcal/mol (4324.6562 without restraints) Performing minimization step: 4498. Total energy = 4329.7582 kcal/mol (4324.2002 without restraints) Performing minimization step: 4499. Total energy = 4329.3008 kcal/mol (4323.7444 without restraints) Performing minimization step: 4500. Total energy = 4328.8442 kcal/mol (4323.2893 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 4328.3880 kcal/mol (4322.8346 without restraints) Performing minimization step: 4502. Total energy = 4327.9317 kcal/mol (4322.3798 without restraints) Performing minimization step: 4503. Total energy = 4327.4754 kcal/mol (4321.9250 without restraints) Performing minimization step: 4504. Total energy = 4327.0195 kcal/mol (4321.4705 without restraints) Performing minimization step: 4505. Total energy = 4326.5644 kcal/mol (4321.0171 without restraints) Performing minimization step: 4506. Total energy = 4326.1097 kcal/mol (4320.5637 without restraints) Performing minimization step: 4507. Total energy = 4325.6554 kcal/mol (4320.1113 without restraints) Performing minimization step: 4508. Total energy = 4325.2012 kcal/mol (4319.6583 without restraints) Performing minimization step: 4509. Total energy = 4324.7469 kcal/mol (4319.2055 without restraints) Performing minimization step: 4510. Total energy = 4324.2933 kcal/mol (4318.7534 without restraints) Performing minimization step: 4511. Total energy = 4323.8403 kcal/mol (4318.3019 without restraints) Performing minimization step: 4512. Total energy = 4323.3868 kcal/mol (4317.8499 without restraints) Performing minimization step: 4513. Total energy = 4322.9337 kcal/mol (4317.3983 without restraints) Performing minimization step: 4514. Total energy = 4322.4803 kcal/mol (4316.9464 without restraints) Performing minimization step: 4515. Total energy = 4322.0273 kcal/mol (4316.4948 without restraints) Performing minimization step: 4516. Total energy = 4321.5748 kcal/mol (4316.0440 without restraints) Performing minimization step: 4517. Total energy = 4321.1225 kcal/mol (4315.5931 without restraints) Performing minimization step: 4518. Total energy = 4320.6702 kcal/mol (4315.1424 without restraints) Performing minimization step: 4519. Total energy = 4320.2187 kcal/mol (4314.6924 without restraints) Performing minimization step: 4520. Total energy = 4319.7672 kcal/mol (4314.2423 without restraints) Performing minimization step: 4521. Total energy = 4319.3159 kcal/mol (4313.7927 without restraints) Performing minimization step: 4522. Total energy = 4318.8653 kcal/mol (4313.3436 without restraints) Performing minimization step: 4523. Total energy = 4318.4146 kcal/mol (4312.8943 without restraints) Performing minimization step: 4524. Total energy = 4317.9642 kcal/mol (4312.4453 without restraints) Performing minimization step: 4525. Total energy = 4317.5138 kcal/mol (4311.9968 without restraints) Performing minimization step: 4526. Total energy = 4317.0641 kcal/mol (4311.5484 without restraints) Performing minimization step: 4527. Total energy = 4316.6145 kcal/mol (4311.1002 without restraints) Performing minimization step: 4528. Total energy = 4316.1656 kcal/mol (4310.6530 without restraints) Performing minimization step: 4529. Total energy = 4315.7164 kcal/mol (4310.2053 without restraints) Performing minimization step: 4530. Total energy = 4315.2675 kcal/mol (4309.7579 without restraints) Performing minimization step: 4531. Total energy = 4314.8195 kcal/mol (4309.3116 without restraints) Performing minimization step: 4532. Total energy = 4314.3718 kcal/mol (4308.8651 without restraints) Performing minimization step: 4533. Total energy = 4313.9239 kcal/mol (4308.4188 without restraints) Performing minimization step: 4534. Total energy = 4313.4761 kcal/mol (4307.9725 without restraints) Performing minimization step: 4535. Total energy = 4313.0287 kcal/mol (4307.5266 without restraints) Performing minimization step: 4536. Total energy = 4312.5814 kcal/mol (4307.0809 without restraints) Performing minimization step: 4537. Total energy = 4312.1345 kcal/mol (4306.6355 without restraints) Performing minimization step: 4538. Total energy = 4311.6877 kcal/mol (4306.1902 without restraints) Performing minimization step: 4539. Total energy = 4311.2416 kcal/mol (4305.7456 without restraints) Performing minimization step: 4540. Total energy = 4310.7955 kcal/mol (4305.3010 without restraints) Performing minimization step: 4541. Total energy = 4310.3497 kcal/mol (4304.8568 without restraints) Performing minimization step: 4542. Total energy = 4309.9046 kcal/mol (4304.4131 without restraints) Performing minimization step: 4543. Total energy = 4309.4592 kcal/mol (4303.9692 without restraints) Performing minimization step: 4544. Total energy = 4309.0141 kcal/mol (4303.5258 without restraints) Performing minimization step: 4545. Total energy = 4308.5694 kcal/mol (4303.0824 without restraints) Performing minimization step: 4546. Total energy = 4308.1248 kcal/mol (4302.6393 without restraints) Performing minimization step: 4547. Total energy = 4307.6805 kcal/mol (4302.1967 without restraints) Performing minimization step: 4548. Total energy = 4307.2364 kcal/mol (4301.7541 without restraints) Performing minimization step: 4549. Total energy = 4306.7926 kcal/mol (4301.3118 without restraints) Performing minimization step: 4550. Total energy = 4306.3486 kcal/mol (4300.8693 without restraints) Performing minimization step: 4551. Total energy = 4305.9053 kcal/mol (4300.4275 without restraints) Performing minimization step: 4552. Total energy = 4305.4627 kcal/mol (4299.9866 without restraints) Performing minimization step: 4553. Total energy = 4305.0202 kcal/mol (4299.5455 without restraints) Performing minimization step: 4554. Total energy = 4304.5776 kcal/mol (4299.1043 without restraints) Performing minimization step: 4555. Total energy = 4304.1357 kcal/mol (4298.6640 without restraints) Performing minimization step: 4556. Total energy = 4303.6939 kcal/mol (4298.2238 without restraints) Performing minimization step: 4557. Total energy = 4303.2519 kcal/mol (4297.7834 without restraints) Performing minimization step: 4558. Total energy = 4302.8105 kcal/mol (4297.3434 without restraints) Performing minimization step: 4559. Total energy = 4302.3693 kcal/mol (4296.9038 without restraints) Performing minimization step: 4560. Total energy = 4301.9281 kcal/mol (4296.4641 without restraints) Performing minimization step: 4561. Total energy = 4301.4876 kcal/mol (4296.0251 without restraints) Performing minimization step: 4562. Total energy = 4301.0475 kcal/mol (4295.5867 without restraints) Performing minimization step: 4563. Total energy = 4300.6076 kcal/mol (4295.1482 without restraints) Performing minimization step: 4564. Total energy = 4300.1675 kcal/mol (4294.7096 without restraints) Performing minimization step: 4565. Total energy = 4299.7280 kcal/mol (4294.2716 without restraints) Performing minimization step: 4566. Total energy = 4299.2886 kcal/mol (4293.8339 without restraints) Performing minimization step: 4567. Total energy = 4298.8496 kcal/mol (4293.3963 without restraints) Performing minimization step: 4568. Total energy = 4298.4106 kcal/mol (4292.9588 without restraints) Performing minimization step: 4569. Total energy = 4297.9723 kcal/mol (4292.5220 without restraints) Performing minimization step: 4570. Total energy = 4297.5341 kcal/mol (4292.0854 without restraints) Performing minimization step: 4571. Total energy = 4297.0963 kcal/mol (4291.6491 without restraints) Performing minimization step: 4572. Total energy = 4296.6584 kcal/mol (4291.2127 without restraints) Performing minimization step: 4573. Total energy = 4296.2213 kcal/mol (4290.7772 without restraints) Performing minimization step: 4574. Total energy = 4295.7839 kcal/mol (4290.3413 without restraints) Performing minimization step: 4575. Total energy = 4295.3469 kcal/mol (4289.9058 without restraints) Performing minimization step: 4576. Total energy = 4294.9103 kcal/mol (4289.4708 without restraints) Performing minimization step: 4577. Total energy = 4294.4743 kcal/mol (4289.0363 without restraints) Performing minimization step: 4578. Total energy = 4294.0380 kcal/mol (4288.6015 without restraints) Performing minimization step: 4579. Total energy = 4293.6020 kcal/mol (4288.1671 without restraints) Performing minimization step: 4580. Total energy = 4293.1664 kcal/mol (4287.7330 without restraints) Performing minimization step: 4581. Total energy = 4292.7308 kcal/mol (4287.2989 without restraints) Performing minimization step: 4582. Total energy = 4292.2952 kcal/mol (4286.8650 without restraints) Performing minimization step: 4583. Total energy = 4291.8605 kcal/mol (4286.4318 without restraints) Performing minimization step: 4584. Total energy = 4291.4259 kcal/mol (4285.9988 without restraints) Performing minimization step: 4585. Total energy = 4290.9915 kcal/mol (4285.5659 without restraints) Performing minimization step: 4586. Total energy = 4290.5571 kcal/mol (4285.1329 without restraints) Performing minimization step: 4587. Total energy = 4290.1229 kcal/mol (4284.7001 without restraints) Performing minimization step: 4588. Total energy = 4289.6891 kcal/mol (4284.2681 without restraints) Performing minimization step: 4589. Total energy = 4289.2556 kcal/mol (4283.8360 without restraints) Performing minimization step: 4590. Total energy = 4288.8226 kcal/mol (4283.4047 without restraints) Performing minimization step: 4591. Total energy = 4288.3900 kcal/mol (4282.9735 without restraints) Performing minimization step: 4592. Total energy = 4287.9575 kcal/mol (4282.5425 without restraints) Performing minimization step: 4593. Total energy = 4287.5253 kcal/mol (4282.1120 without restraints) Performing minimization step: 4594. Total energy = 4287.0936 kcal/mol (4281.6817 without restraints) Performing minimization step: 4595. Total energy = 4286.6618 kcal/mol (4281.2516 without restraints) Performing minimization step: 4596. Total energy = 4286.2301 kcal/mol (4280.8214 without restraints) Performing minimization step: 4597. Total energy = 4285.7988 kcal/mol (4280.3916 without restraints) Performing minimization step: 4598. Total energy = 4285.3678 kcal/mol (4279.9623 without restraints) Performing minimization step: 4599. Total energy = 4284.9377 kcal/mol (4279.5336 without restraints) Performing minimization step: 4600. Total energy = 4284.5072 kcal/mol (4279.1046 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4284.0771 kcal/mol (4278.6760 without restraints) Performing minimization step: 4602. Total energy = 4283.6470 kcal/mol (4278.2475 without restraints) Performing minimization step: 4603. Total energy = 4283.2171 kcal/mol (4277.8191 without restraints) Performing minimization step: 4604. Total energy = 4282.7877 kcal/mol (4277.3913 without restraints) Performing minimization step: 4605. Total energy = 4282.3582 kcal/mol (4276.9633 without restraints) Performing minimization step: 4606. Total energy = 4281.9289 kcal/mol (4276.5355 without restraints) Performing minimization step: 4607. Total energy = 4281.5000 kcal/mol (4276.1083 without restraints) Performing minimization step: 4608. Total energy = 4281.0711 kcal/mol (4275.6809 without restraints) Performing minimization step: 4609. Total energy = 4280.6427 kcal/mol (4275.2541 without restraints) Performing minimization step: 4610. Total energy = 4280.2145 kcal/mol (4274.8274 without restraints) Performing minimization step: 4611. Total energy = 4279.7874 kcal/mol (4274.4018 without restraints) Performing minimization step: 4612. Total energy = 4279.3596 kcal/mol (4273.9755 without restraints) Performing minimization step: 4613. Total energy = 4278.9322 kcal/mol (4273.5497 without restraints) Performing minimization step: 4614. Total energy = 4278.5055 kcal/mol (4273.1246 without restraints) Performing minimization step: 4615. Total energy = 4278.0785 kcal/mol (4272.6992 without restraints) Performing minimization step: 4616. Total energy = 4277.6518 kcal/mol (4272.2739 without restraints) Performing minimization step: 4617. Total energy = 4277.2252 kcal/mol (4271.8489 without restraints) Performing minimization step: 4618. Total energy = 4276.7994 kcal/mol (4271.4246 without restraints) Performing minimization step: 4619. Total energy = 4276.3738 kcal/mol (4271.0006 without restraints) Performing minimization step: 4620. Total energy = 4275.9486 kcal/mol (4270.5770 without restraints) Performing minimization step: 4621. Total energy = 4275.5231 kcal/mol (4270.1530 without restraints) Performing minimization step: 4622. Total energy = 4275.0977 kcal/mol (4269.7290 without restraints) Performing minimization step: 4623. Total energy = 4274.6727 kcal/mol (4269.3058 without restraints) Performing minimization step: 4624. Total energy = 4274.2483 kcal/mol (4268.8832 without restraints) Performing minimization step: 4625. Total energy = 4273.8241 kcal/mol (4268.4602 without restraints) Performing minimization step: 4626. Total energy = 4273.3999 kcal/mol (4268.0377 without restraints) Performing minimization step: 4627. Total energy = 4272.9759 kcal/mol (4267.6152 without restraints) Performing minimization step: 4628. Total energy = 4272.5525 kcal/mol (4267.1933 without restraints) Performing minimization step: 4629. Total energy = 4272.1292 kcal/mol (4266.7717 without restraints) Performing minimization step: 4630. Total energy = 4271.7062 kcal/mol (4266.3501 without restraints) Performing minimization step: 4631. Total energy = 4271.2834 kcal/mol (4265.9289 without restraints) Performing minimization step: 4632. Total energy = 4270.8607 kcal/mol (4265.5078 without restraints) Performing minimization step: 4633. Total energy = 4270.4382 kcal/mol (4265.0868 without restraints) Performing minimization step: 4634. Total energy = 4270.0158 kcal/mol (4264.6660 without restraints) Performing minimization step: 4635. Total energy = 4269.5943 kcal/mol (4264.2460 without restraints) Performing minimization step: 4636. Total energy = 4269.1724 kcal/mol (4263.8257 without restraints) Performing minimization step: 4637. Total energy = 4268.7509 kcal/mol (4263.4057 without restraints) Performing minimization step: 4638. Total energy = 4268.3295 kcal/mol (4262.9859 without restraints) Performing minimization step: 4639. Total energy = 4267.9085 kcal/mol (4262.5666 without restraints) Performing minimization step: 4640. Total energy = 4267.4883 kcal/mol (4262.1479 without restraints) Performing minimization step: 4641. Total energy = 4267.0676 kcal/mol (4261.7287 without restraints) Performing minimization step: 4642. Total energy = 4266.6475 kcal/mol (4261.3103 without restraints) Performing minimization step: 4643. Total energy = 4266.2278 kcal/mol (4260.8920 without restraints) Performing minimization step: 4644. Total energy = 4265.8081 kcal/mol (4260.4739 without restraints) Performing minimization step: 4645. Total energy = 4265.3885 kcal/mol (4260.0558 without restraints) Performing minimization step: 4646. Total energy = 4264.9693 kcal/mol (4259.6382 without restraints) Performing minimization step: 4647. Total energy = 4264.5502 kcal/mol (4259.2207 without restraints) Performing minimization step: 4648. Total energy = 4264.1314 kcal/mol (4258.8034 without restraints) Performing minimization step: 4649. Total energy = 4263.7125 kcal/mol (4258.3860 without restraints) Performing minimization step: 4650. Total energy = 4263.2937 kcal/mol (4257.9689 without restraints) Performing minimization step: 4651. Total energy = 4262.8756 kcal/mol (4257.5524 without restraints) Performing minimization step: 4652. Total energy = 4262.4578 kcal/mol (4257.1361 without restraints) Performing minimization step: 4653. Total energy = 4262.0401 kcal/mol (4256.7200 without restraints) Performing minimization step: 4654. Total energy = 4261.6230 kcal/mol (4256.3045 without restraints) Performing minimization step: 4655. Total energy = 4261.2058 kcal/mol (4255.8888 without restraints) Performing minimization step: 4656. Total energy = 4260.7889 kcal/mol (4255.4736 without restraints) Performing minimization step: 4657. Total energy = 4260.3722 kcal/mol (4255.0584 without restraints) Performing minimization step: 4658. Total energy = 4259.9557 kcal/mol (4254.6434 without restraints) Performing minimization step: 4659. Total energy = 4259.5398 kcal/mol (4254.2291 without restraints) Performing minimization step: 4660. Total energy = 4259.1241 kcal/mol (4253.8150 without restraints) Performing minimization step: 4661. Total energy = 4258.7083 kcal/mol (4253.4008 without restraints) Performing minimization step: 4662. Total energy = 4258.2927 kcal/mol (4252.9867 without restraints) Performing minimization step: 4663. Total energy = 4257.8773 kcal/mol (4252.5728 without restraints) Performing minimization step: 4664. Total energy = 4257.4624 kcal/mol (4252.1596 without restraints) Performing minimization step: 4665. Total energy = 4257.0482 kcal/mol (4251.7470 without restraints) Performing minimization step: 4666. Total energy = 4256.6339 kcal/mol (4251.3342 without restraints) Performing minimization step: 4667. Total energy = 4256.2195 kcal/mol (4250.9214 without restraints) Performing minimization step: 4668. Total energy = 4255.8056 kcal/mol (4250.5091 without restraints) Performing minimization step: 4669. Total energy = 4255.3918 kcal/mol (4250.0968 without restraints) Performing minimization step: 4670. Total energy = 4254.9785 kcal/mol (4249.6851 without restraints) Performing minimization step: 4671. Total energy = 4254.5656 kcal/mol (4249.2738 without restraints) Performing minimization step: 4672. Total energy = 4254.1524 kcal/mol (4248.8622 without restraints) Performing minimization step: 4673. Total energy = 4253.7396 kcal/mol (4248.4509 without restraints) Performing minimization step: 4674. Total energy = 4253.3270 kcal/mol (4248.0400 without restraints) Performing minimization step: 4675. Total energy = 4252.9147 kcal/mol (4247.6293 without restraints) Performing minimization step: 4676. Total energy = 4252.5024 kcal/mol (4247.2186 without restraints) Performing minimization step: 4677. Total energy = 4252.0907 kcal/mol (4246.8084 without restraints) Performing minimization step: 4678. Total energy = 4251.6789 kcal/mol (4246.3982 without restraints) Performing minimization step: 4679. Total energy = 4251.2675 kcal/mol (4245.9882 without restraints) Performing minimization step: 4680. Total energy = 4250.8561 kcal/mol (4245.5785 without restraints) Performing minimization step: 4681. Total energy = 4250.4449 kcal/mol (4245.1688 without restraints) Performing minimization step: 4682. Total energy = 4250.0343 kcal/mol (4244.7599 without restraints) Performing minimization step: 4683. Total energy = 4249.6236 kcal/mol (4244.3508 without restraints) Performing minimization step: 4684. Total energy = 4249.2133 kcal/mol (4243.9420 without restraints) Performing minimization step: 4685. Total energy = 4248.8032 kcal/mol (4243.5335 without restraints) Performing minimization step: 4686. Total energy = 4248.3934 kcal/mol (4243.1254 without restraints) Performing minimization step: 4687. Total energy = 4247.9841 kcal/mol (4242.7175 without restraints) Performing minimization step: 4688. Total energy = 4247.5747 kcal/mol (4242.3097 without restraints) Performing minimization step: 4689. Total energy = 4247.1657 kcal/mol (4241.9023 without restraints) Performing minimization step: 4690. Total energy = 4246.7566 kcal/mol (4241.4948 without restraints) Performing minimization step: 4691. Total energy = 4246.3478 kcal/mol (4241.0876 without restraints) Performing minimization step: 4692. Total energy = 4245.9395 kcal/mol (4240.6809 without restraints) Performing minimization step: 4693. Total energy = 4245.5317 kcal/mol (4240.2747 without restraints) Performing minimization step: 4694. Total energy = 4245.1236 kcal/mol (4239.8681 without restraints) Performing minimization step: 4695. Total energy = 4244.7164 kcal/mol (4239.4625 without restraints) Performing minimization step: 4696. Total energy = 4244.3090 kcal/mol (4239.0568 without restraints) Performing minimization step: 4697. Total energy = 4243.9021 kcal/mol (4238.6517 without restraints) Performing minimization step: 4698. Total energy = 4243.4957 kcal/mol (4238.2466 without restraints) Performing minimization step: 4699. Total energy = 4243.0890 kcal/mol (4237.8416 without restraints) Performing minimization step: 4700. Total energy = 4242.6825 kcal/mol (4237.4366 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4242.2761 kcal/mol (4237.0318 without restraints) Performing minimization step: 4702. Total energy = 4241.8700 kcal/mol (4236.6273 without restraints) Performing minimization step: 4703. Total energy = 4241.4643 kcal/mol (4236.2231 without restraints) Performing minimization step: 4704. Total energy = 4241.0590 kcal/mol (4235.8194 without restraints) Performing minimization step: 4705. Total energy = 4240.6537 kcal/mol (4235.4158 without restraints) Performing minimization step: 4706. Total energy = 4240.2487 kcal/mol (4235.0124 without restraints) Performing minimization step: 4707. Total energy = 4239.8437 kcal/mol (4234.6089 without restraints) Performing minimization step: 4708. Total energy = 4239.4389 kcal/mol (4234.2058 without restraints) Performing minimization step: 4709. Total energy = 4239.0349 kcal/mol (4233.8033 without restraints) Performing minimization step: 4710. Total energy = 4238.6308 kcal/mol (4233.4009 without restraints) Performing minimization step: 4711. Total energy = 4238.2271 kcal/mol (4232.9988 without restraints) Performing minimization step: 4712. Total energy = 4237.8239 kcal/mol (4232.5971 without restraints) Performing minimization step: 4713. Total energy = 4237.4203 kcal/mol (4232.1951 without restraints) Performing minimization step: 4714. Total energy = 4237.0171 kcal/mol (4231.7935 without restraints) Performing minimization step: 4715. Total energy = 4236.6138 kcal/mol (4231.3917 without restraints) Performing minimization step: 4716. Total energy = 4236.2108 kcal/mol (4230.9904 without restraints) Performing minimization step: 4717. Total energy = 4235.8085 kcal/mol (4230.5898 without restraints) Performing minimization step: 4718. Total energy = 4235.4064 kcal/mol (4230.1892 without restraints) Performing minimization step: 4719. Total energy = 4235.0042 kcal/mol (4229.7886 without restraints) Performing minimization step: 4720. Total energy = 4234.6024 kcal/mol (4229.3884 without restraints) Performing minimization step: 4721. Total energy = 4234.2011 kcal/mol (4228.9888 without restraints) Performing minimization step: 4722. Total energy = 4233.7996 kcal/mol (4228.5888 without restraints) Performing minimization step: 4723. Total energy = 4233.3985 kcal/mol (4228.1893 without restraints) Performing minimization step: 4724. Total energy = 4232.9975 kcal/mol (4227.7899 without restraints) Performing minimization step: 4725. Total energy = 4232.5967 kcal/mol (4227.3909 without restraints) Performing minimization step: 4726. Total energy = 4232.1966 kcal/mol (4226.9923 without restraints) Performing minimization step: 4727. Total energy = 4231.7964 kcal/mol (4226.5936 without restraints) Performing minimization step: 4728. Total energy = 4231.3962 kcal/mol (4226.1950 without restraints) Performing minimization step: 4729. Total energy = 4230.9961 kcal/mol (4225.7965 without restraints) Performing minimization step: 4730. Total energy = 4230.5970 kcal/mol (4225.3990 without restraints) Performing minimization step: 4731. Total energy = 4230.1975 kcal/mol (4225.0011 without restraints) Performing minimization step: 4732. Total energy = 4229.7983 kcal/mol (4224.6038 without restraints) Performing minimization step: 4733. Total energy = 4229.3994 kcal/mol (4224.2062 without restraints) Performing minimization step: 4734. Total energy = 4229.0009 kcal/mol (4223.8093 without restraints) Performing minimization step: 4735. Total energy = 4228.6022 kcal/mol (4223.4123 without restraints) Performing minimization step: 4736. Total energy = 4228.2038 kcal/mol (4223.0154 without restraints) Performing minimization step: 4737. Total energy = 4227.8061 kcal/mol (4222.6195 without restraints) Performing minimization step: 4738. Total energy = 4227.4084 kcal/mol (4222.2232 without restraints) Performing minimization step: 4739. Total energy = 4227.0109 kcal/mol (4221.8273 without restraints) Performing minimization step: 4740. Total energy = 4226.6132 kcal/mol (4221.4313 without restraints) Performing minimization step: 4741. Total energy = 4226.2159 kcal/mol (4221.0356 without restraints) Performing minimization step: 4742. Total energy = 4225.8188 kcal/mol (4220.6401 without restraints) Performing minimization step: 4743. Total energy = 4225.4228 kcal/mol (4220.2460 without restraints) Performing minimization step: 4744. Total energy = 4225.0268 kcal/mol (4219.8514 without restraints) Performing minimization step: 4745. Total energy = 4224.6305 kcal/mol (4219.4567 without restraints) Performing minimization step: 4746. Total energy = 4224.2343 kcal/mol (4219.0622 without restraints) Performing minimization step: 4747. Total energy = 4223.8387 kcal/mol (4218.6681 without restraints) Performing minimization step: 4748. Total energy = 4223.4434 kcal/mol (4218.2744 without restraints) Performing minimization step: 4749. Total energy = 4223.0479 kcal/mol (4217.8805 without restraints) Performing minimization step: 4750. Total energy = 4222.6527 kcal/mol (4217.4870 without restraints) Performing minimization step: 4751. Total energy = 4222.2577 kcal/mol (4217.0936 without restraints) Performing minimization step: 4752. Total energy = 4221.8630 kcal/mol (4216.7004 without restraints) Performing minimization step: 4753. Total energy = 4221.4683 kcal/mol (4216.3073 without restraints) Performing minimization step: 4754. Total energy = 4221.0740 kcal/mol (4215.9147 without restraints) Performing minimization step: 4755. Total energy = 4220.6799 kcal/mol (4215.5223 without restraints) Performing minimization step: 4756. Total energy = 4220.2863 kcal/mol (4215.1302 without restraints) Performing minimization step: 4757. Total energy = 4219.8926 kcal/mol (4214.7382 without restraints) Performing minimization step: 4758. Total energy = 4219.4994 kcal/mol (4214.3465 without restraints) Performing minimization step: 4759. Total energy = 4219.1063 kcal/mol (4213.9552 without restraints) Performing minimization step: 4760. Total energy = 4218.7130 kcal/mol (4213.5634 without restraints) Performing minimization step: 4761. Total energy = 4218.3200 kcal/mol (4213.1720 without restraints) Performing minimization step: 4762. Total energy = 4217.9276 kcal/mol (4212.7812 without restraints) Performing minimization step: 4763. Total energy = 4217.5349 kcal/mol (4212.3901 without restraints) Performing minimization step: 4764. Total energy = 4217.1428 kcal/mol (4211.9996 without restraints) Performing minimization step: 4765. Total energy = 4216.7509 kcal/mol (4211.6093 without restraints) Performing minimization step: 4766. Total energy = 4216.3592 kcal/mol (4211.2193 without restraints) Performing minimization step: 4767. Total energy = 4215.9675 kcal/mol (4210.8293 without restraints) Performing minimization step: 4768. Total energy = 4215.5761 kcal/mol (4210.4395 without restraints) Performing minimization step: 4769. Total energy = 4215.1852 kcal/mol (4210.0503 without restraints) Performing minimization step: 4770. Total energy = 4214.7943 kcal/mol (4209.6609 without restraints) Performing minimization step: 4771. Total energy = 4214.4035 kcal/mol (4209.2717 without restraints) Performing minimization step: 4772. Total energy = 4214.0129 kcal/mol (4208.8827 without restraints) Performing minimization step: 4773. Total energy = 4213.6229 kcal/mol (4208.4944 without restraints) Performing minimization step: 4774. Total energy = 4213.2334 kcal/mol (4208.1065 without restraints) Performing minimization step: 4775. Total energy = 4212.8434 kcal/mol (4207.7181 without restraints) Performing minimization step: 4776. Total energy = 4212.4540 kcal/mol (4207.3304 without restraints) Performing minimization step: 4777. Total energy = 4212.0648 kcal/mol (4206.9427 without restraints) Performing minimization step: 4778. Total energy = 4211.6754 kcal/mol (4206.5550 without restraints) Performing minimization step: 4779. Total energy = 4211.2864 kcal/mol (4206.1679 without restraints) Performing minimization step: 4780. Total energy = 4210.8978 kcal/mol (4205.7807 without restraints) Performing minimization step: 4781. Total energy = 4210.5090 kcal/mol (4205.3934 without restraints) Performing minimization step: 4782. Total energy = 4210.1204 kcal/mol (4205.0066 without restraints) Performing minimization step: 4783. Total energy = 4209.7324 kcal/mol (4204.6202 without restraints) Performing minimization step: 4784. Total energy = 4209.3444 kcal/mol (4204.2337 without restraints) Performing minimization step: 4785. Total energy = 4208.9565 kcal/mol (4203.8475 without restraints) Performing minimization step: 4786. Total energy = 4208.5688 kcal/mol (4203.4614 without restraints) Performing minimization step: 4787. Total energy = 4208.1816 kcal/mol (4203.0760 without restraints) Performing minimization step: 4788. Total energy = 4207.7945 kcal/mol (4202.6904 without restraints) Performing minimization step: 4789. Total energy = 4207.4077 kcal/mol (4202.3052 without restraints) Performing minimization step: 4790. Total energy = 4207.0206 kcal/mol (4201.9198 without restraints) Performing minimization step: 4791. Total energy = 4206.6341 kcal/mol (4201.5350 without restraints) Performing minimization step: 4792. Total energy = 4206.2475 kcal/mol (4201.1500 without restraints) Performing minimization step: 4793. Total energy = 4205.8614 kcal/mol (4200.7656 without restraints) Performing minimization step: 4794. Total energy = 4205.4757 kcal/mol (4200.3814 without restraints) Performing minimization step: 4795. Total energy = 4205.0900 kcal/mol (4199.9974 without restraints) Performing minimization step: 4796. Total energy = 4204.7043 kcal/mol (4199.6133 without restraints) Performing minimization step: 4797. Total energy = 4204.3189 kcal/mol (4199.2295 without restraints) Performing minimization step: 4798. Total energy = 4203.9336 kcal/mol (4198.8459 without restraints) Performing minimization step: 4799. Total energy = 4203.5490 kcal/mol (4198.4629 without restraints) Performing minimization step: 4800. Total energy = 4203.1641 kcal/mol (4198.0796 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4202.7795 kcal/mol (4197.6968 without restraints) Performing minimization step: 4802. Total energy = 4202.3951 kcal/mol (4197.3139 without restraints) Performing minimization step: 4803. Total energy = 4202.0108 kcal/mol (4196.9313 without restraints) Performing minimization step: 4804. Total energy = 4201.6268 kcal/mol (4196.5489 without restraints) Performing minimization step: 4805. Total energy = 4201.2429 kcal/mol (4196.1666 without restraints) Performing minimization step: 4806. Total energy = 4200.8596 kcal/mol (4195.7849 without restraints) Performing minimization step: 4807. Total energy = 4200.4763 kcal/mol (4195.4033 without restraints) Performing minimization step: 4808. Total energy = 4200.0932 kcal/mol (4195.0218 without restraints) Performing minimization step: 4809. Total energy = 4199.7100 kcal/mol (4194.6403 without restraints) Performing minimization step: 4810. Total energy = 4199.3272 kcal/mol (4194.2592 without restraints) Performing minimization step: 4811. Total energy = 4198.9451 kcal/mol (4193.8787 without restraints) Performing minimization step: 4812. Total energy = 4198.5626 kcal/mol (4193.4978 without restraints) Performing minimization step: 4813. Total energy = 4198.1798 kcal/mol (4193.1166 without restraints) Performing minimization step: 4814. Total energy = 4197.7979 kcal/mol (4192.7364 without restraints) Performing minimization step: 4815. Total energy = 4197.4162 kcal/mol (4192.3563 without restraints) Performing minimization step: 4816. Total energy = 4197.0348 kcal/mol (4191.9766 without restraints) Performing minimization step: 4817. Total energy = 4196.6538 kcal/mol (4191.5972 without restraints) Performing minimization step: 4818. Total energy = 4196.2726 kcal/mol (4191.2176 without restraints) Performing minimization step: 4819. Total energy = 4195.8914 kcal/mol (4190.8381 without restraints) Performing minimization step: 4820. Total energy = 4195.5104 kcal/mol (4190.4587 without restraints) Performing minimization step: 4821. Total energy = 4195.1295 kcal/mol (4190.0794 without restraints) Performing minimization step: 4822. Total energy = 4194.7490 kcal/mol (4189.7006 without restraints) Performing minimization step: 4823. Total energy = 4194.3688 kcal/mol (4189.3222 without restraints) Performing minimization step: 4824. Total energy = 4193.9890 kcal/mol (4188.9439 without restraints) Performing minimization step: 4825. Total energy = 4193.6091 kcal/mol (4188.5656 without restraints) Performing minimization step: 4826. Total energy = 4193.2296 kcal/mol (4188.1878 without restraints) Performing minimization step: 4827. Total energy = 4192.8499 kcal/mol (4187.8097 without restraints) Performing minimization step: 4828. Total energy = 4192.4705 kcal/mol (4187.4321 without restraints) Performing minimization step: 4829. Total energy = 4192.0911 kcal/mol (4187.0542 without restraints) Performing minimization step: 4830. Total energy = 4191.7123 kcal/mol (4186.6772 without restraints) Performing minimization step: 4831. Total energy = 4191.3334 kcal/mol (4186.3000 without restraints) Performing minimization step: 4832. Total energy = 4190.9545 kcal/mol (4185.9225 without restraints) Performing minimization step: 4833. Total energy = 4190.5759 kcal/mol (4185.5457 without restraints) Performing minimization step: 4834. Total energy = 4190.1978 kcal/mol (4185.1693 without restraints) Performing minimization step: 4835. Total energy = 4189.8197 kcal/mol (4184.7928 without restraints) Performing minimization step: 4836. Total energy = 4189.4422 kcal/mol (4184.4168 without restraints) Performing minimization step: 4837. Total energy = 4189.0641 kcal/mol (4184.0404 without restraints) Performing minimization step: 4838. Total energy = 4188.6862 kcal/mol (4183.6641 without restraints) Performing minimization step: 4839. Total energy = 4188.3087 kcal/mol (4183.2883 without restraints) Performing minimization step: 4840. Total energy = 4187.9311 kcal/mol (4182.9122 without restraints) Performing minimization step: 4841. Total energy = 4187.5537 kcal/mol (4182.5368 without restraints) Performing minimization step: 4842. Total energy = 4187.1766 kcal/mol (4182.1612 without restraints) Performing minimization step: 4843. Total energy = 4186.7997 kcal/mol (4181.7859 without restraints) Performing minimization step: 4844. Total energy = 4186.4229 kcal/mol (4181.4107 without restraints) Performing minimization step: 4845. Total energy = 4186.0462 kcal/mol (4181.0358 without restraints) Performing minimization step: 4846. Total energy = 4185.6699 kcal/mol (4180.6610 without restraints) Performing minimization step: 4847. Total energy = 4185.2935 kcal/mol (4180.2864 without restraints) Performing minimization step: 4848. Total energy = 4184.9174 kcal/mol (4179.9117 without restraints) Performing minimization step: 4849. Total energy = 4184.5411 kcal/mol (4179.5372 without restraints) Performing minimization step: 4850. Total energy = 4184.1659 kcal/mol (4179.1638 without restraints) Performing minimization step: 4851. Total energy = 4183.7904 kcal/mol (4178.7898 without restraints) Performing minimization step: 4852. Total energy = 4183.4150 kcal/mol (4178.4160 without restraints) Performing minimization step: 4853. Total energy = 4183.0397 kcal/mol (4178.0425 without restraints) Performing minimization step: 4854. Total energy = 4182.6644 kcal/mol (4177.6688 without restraints) Performing minimization step: 4855. Total energy = 4182.2893 kcal/mol (4177.2954 without restraints) Performing minimization step: 4856. Total energy = 4181.9148 kcal/mol (4176.9224 without restraints) Performing minimization step: 4857. Total energy = 4181.5400 kcal/mol (4176.5493 without restraints) Performing minimization step: 4858. Total energy = 4181.1651 kcal/mol (4176.1760 without restraints) Performing minimization step: 4859. Total energy = 4180.7903 kcal/mol (4175.8029 without restraints) Performing minimization step: 4860. Total energy = 4180.4157 kcal/mol (4175.4299 without restraints) Performing minimization step: 4861. Total energy = 4180.0414 kcal/mol (4175.0573 without restraints) Performing minimization step: 4862. Total energy = 4179.6670 kcal/mol (4174.6846 without restraints) Performing minimization step: 4863. Total energy = 4179.2930 kcal/mol (4174.3123 without restraints) Performing minimization step: 4864. Total energy = 4178.9195 kcal/mol (4173.9404 without restraints) Performing minimization step: 4865. Total energy = 4178.5459 kcal/mol (4173.5686 without restraints) Performing minimization step: 4866. Total energy = 4178.1723 kcal/mol (4173.1965 without restraints) Performing minimization step: 4867. Total energy = 4177.7989 kcal/mol (4172.8247 without restraints) Performing minimization step: 4868. Total energy = 4177.4258 kcal/mol (4172.4533 without restraints) Performing minimization step: 4869. Total energy = 4177.0526 kcal/mol (4172.0818 without restraints) Performing minimization step: 4870. Total energy = 4176.6794 kcal/mol (4171.7101 without restraints) Performing minimization step: 4871. Total energy = 4176.3063 kcal/mol (4171.3389 without restraints) Performing minimization step: 4872. Total energy = 4175.9336 kcal/mol (4170.9678 without restraints) Performing minimization step: 4873. Total energy = 4175.5611 kcal/mol (4170.5969 without restraints) Performing minimization step: 4874. Total energy = 4175.1890 kcal/mol (4170.2264 without restraints) Performing minimization step: 4875. Total energy = 4174.8164 kcal/mol (4169.8555 without restraints) Performing minimization step: 4876. Total energy = 4174.4436 kcal/mol (4169.4843 without restraints) Performing minimization step: 4877. Total energy = 4174.0715 kcal/mol (4169.1138 without restraints) Performing minimization step: 4878. Total energy = 4173.6993 kcal/mol (4168.7432 without restraints) Performing minimization step: 4879. Total energy = 4173.3274 kcal/mol (4168.3730 without restraints) Performing minimization step: 4880. Total energy = 4172.9553 kcal/mol (4168.0026 without restraints) Performing minimization step: 4881. Total energy = 4172.5832 kcal/mol (4167.6322 without restraints) Performing minimization step: 4882. Total energy = 4172.2117 kcal/mol (4167.2623 without restraints) Performing minimization step: 4883. Total energy = 4171.8393 kcal/mol (4166.8914 without restraints) Performing minimization step: 4884. Total energy = 4171.4671 kcal/mol (4166.5210 without restraints) Performing minimization step: 4885. Total energy = 4171.0957 kcal/mol (4166.1512 without restraints) Performing minimization step: 4886. Total energy = 4170.7244 kcal/mol (4165.7816 without restraints) Performing minimization step: 4887. Total energy = 4170.3531 kcal/mol (4165.4120 without restraints) Performing minimization step: 4888. Total energy = 4169.9817 kcal/mol (4165.0422 without restraints) Performing minimization step: 4889. Total energy = 4169.6108 kcal/mol (4164.6729 without restraints) Performing minimization step: 4890. Total energy = 4169.2393 kcal/mol (4164.3030 without restraints) Performing minimization step: 4891. Total energy = 4168.8679 kcal/mol (4163.9333 without restraints) Performing minimization step: 4892. Total energy = 4168.4965 kcal/mol (4163.5635 without restraints) Performing minimization step: 4893. Total energy = 4168.1253 kcal/mol (4163.1940 without restraints) Performing minimization step: 4894. Total energy = 4167.7540 kcal/mol (4162.8243 without restraints) Performing minimization step: 4895. Total energy = 4167.3826 kcal/mol (4162.4546 without restraints) Performing minimization step: 4896. Total energy = 4167.0114 kcal/mol (4162.0848 without restraints) Performing minimization step: 4897. Total energy = 4166.6398 kcal/mol (4161.7151 without restraints) Performing minimization step: 4898. Total energy = 4166.2692 kcal/mol (4161.3460 without restraints) Performing minimization step: 4899. Total energy = 4165.8982 kcal/mol (4160.9767 without restraints) Performing minimization step: 4900. Total energy = 4165.5270 kcal/mol (4160.6071 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4165.1561 kcal/mol (4160.2379 without restraints) Performing minimization step: 4902. Total energy = 4164.7850 kcal/mol (4159.8684 without restraints) Performing minimization step: 4903. Total energy = 4164.4142 kcal/mol (4159.4992 without restraints) Performing minimization step: 4904. Total energy = 4164.0434 kcal/mol (4159.1302 without restraints) Performing minimization step: 4905. Total energy = 4163.6722 kcal/mol (4158.7607 without restraints) Performing minimization step: 4906. Total energy = 4163.3014 kcal/mol (4158.3914 without restraints) Performing minimization step: 4907. Total energy = 4162.9297 kcal/mol (4158.0210 without restraints) Performing minimization step: 4908. Total energy = 4162.5582 kcal/mol (4157.6514 without restraints) Performing minimization step: 4909. Total energy = 4162.1868 kcal/mol (4157.2818 without restraints) Performing minimization step: 4910. Total energy = 4161.8154 kcal/mol (4156.9119 without restraints) Performing minimization step: 4911. Total energy = 4161.4441 kcal/mol (4156.5421 without restraints) Performing minimization step: 4912. Total energy = 4161.0725 kcal/mol (4156.1721 without restraints) Performing minimization step: 4913. Total energy = 4160.7006 kcal/mol (4155.8019 without restraints) Performing minimization step: 4914. Total energy = 4160.3290 kcal/mol (4155.4319 without restraints) Performing minimization step: 4915. Total energy = 4159.9570 kcal/mol (4155.0616 without restraints) Performing minimization step: 4916. Total energy = 4159.5852 kcal/mol (4154.6914 without restraints) Performing minimization step: 4917. Total energy = 4159.2132 kcal/mol (4154.3210 without restraints) Performing minimization step: 4918. Total energy = 4158.8417 kcal/mol (4153.9510 without restraints) Performing minimization step: 4919. Total energy = 4158.4691 kcal/mol (4153.5801 without restraints) Performing minimization step: 4920. Total energy = 4158.0970 kcal/mol (4153.2096 without restraints) Performing minimization step: 4921. Total energy = 4157.7243 kcal/mol (4152.8385 without restraints) Performing minimization step: 4922. Total energy = 4157.3516 kcal/mol (4152.4675 without restraints) Performing minimization step: 4923. Total energy = 4156.9786 kcal/mol (4152.0960 without restraints) Performing minimization step: 4924. Total energy = 4156.6053 kcal/mol (4151.7241 without restraints) Performing minimization step: 4925. Total energy = 4156.2319 kcal/mol (4151.3525 without restraints) Performing minimization step: 4926. Total energy = 4155.8584 kcal/mol (4150.9805 without restraints) Performing minimization step: 4927. Total energy = 4155.4846 kcal/mol (4150.6084 without restraints) Performing minimization step: 4928. Total energy = 4155.1104 kcal/mol (4150.2357 without restraints) Performing minimization step: 4929. Total energy = 4154.7361 kcal/mol (4149.8631 without restraints) Performing minimization step: 4930. Total energy = 4154.3615 kcal/mol (4149.4900 without restraints) Performing minimization step: 4931. Total energy = 4153.9863 kcal/mol (4149.1164 without restraints) Performing minimization step: 4932. Total energy = 4153.6111 kcal/mol (4148.7428 without restraints) Performing minimization step: 4933. Total energy = 4153.2358 kcal/mol (4148.3690 without restraints) Performing minimization step: 4934. Total energy = 4152.8599 kcal/mol (4147.9947 without restraints) Performing minimization step: 4935. Total energy = 4152.4839 kcal/mol (4147.6202 without restraints) Performing minimization step: 4936. Total energy = 4152.1075 kcal/mol (4147.2455 without restraints) Performing minimization step: 4937. Total energy = 4151.7313 kcal/mol (4146.8709 without restraints) Performing minimization step: 4938. Total energy = 4151.3540 kcal/mol (4146.4951 without restraints) Performing minimization step: 4939. Total energy = 4150.9765 kcal/mol (4146.1192 without restraints) Performing minimization step: 4940. Total energy = 4150.5984 kcal/mol (4145.7424 without restraints) Performing minimization step: 4941. Total energy = 4150.2194 kcal/mol (4145.3650 without restraints) Performing minimization step: 4942. Total energy = 4149.8403 kcal/mol (4144.9873 without restraints) Performing minimization step: 4943. Total energy = 4149.4609 kcal/mol (4144.6096 without restraints) Performing minimization step: 4944. Total energy = 4149.0810 kcal/mol (4144.2312 without restraints) Performing minimization step: 4945. Total energy = 4148.7001 kcal/mol (4143.8519 without restraints) Performing minimization step: 4946. Total energy = 4148.3189 kcal/mol (4143.4721 without restraints) Performing minimization step: 4947. Total energy = 4147.9373 kcal/mol (4143.0920 without restraints) Performing minimization step: 4948. Total energy = 4147.5550 kcal/mol (4142.7113 without restraints) Performing minimization step: 4949. Total energy = 4147.1720 kcal/mol (4142.3297 without restraints) Performing minimization step: 4950. Total energy = 4146.7885 kcal/mol (4141.9477 without restraints) Performing minimization step: 4951. Total energy = 4146.4043 kcal/mol (4141.5650 without restraints) Performing minimization step: 4952. Total energy = 4146.0193 kcal/mol (4141.1814 without restraints) Performing minimization step: 4953. Total energy = 4145.6336 kcal/mol (4140.7973 without restraints) Performing minimization step: 4954. Total energy = 4145.2469 kcal/mol (4140.4120 without restraints) Performing minimization step: 4955. Total energy = 4144.8593 kcal/mol (4140.0259 without restraints) Performing minimization step: 4956. Total energy = 4144.4713 kcal/mol (4139.6393 without restraints) Performing minimization step: 4957. Total energy = 4144.0828 kcal/mol (4139.2523 without restraints) Performing minimization step: 4958. Total energy = 4143.6929 kcal/mol (4138.8638 without restraints) Performing minimization step: 4959. Total energy = 4143.3022 kcal/mol (4138.4745 without restraints) Performing minimization step: 4960. Total energy = 4142.9110 kcal/mol (4138.0847 without restraints) Performing minimization step: 4961. Total energy = 4142.5182 kcal/mol (4137.6934 without restraints) Performing minimization step: 4962. Total energy = 4142.1245 kcal/mol (4137.3011 without restraints) Performing minimization step: 4963. Total energy = 4141.7297 kcal/mol (4136.9076 without restraints) Performing minimization step: 4964. Total energy = 4141.3337 kcal/mol (4136.5131 without restraints) Performing minimization step: 4965. Total energy = 4140.9371 kcal/mol (4136.1178 without restraints) Performing minimization step: 4966. Total energy = 4140.5395 kcal/mol (4135.7216 without restraints) Performing minimization step: 4967. Total energy = 4140.1402 kcal/mol (4135.3237 without restraints) Performing minimization step: 4968. Total energy = 4139.7397 kcal/mol (4134.9246 without restraints) Performing minimization step: 4969. Total energy = 4139.3383 kcal/mol (4134.5247 without restraints) Performing minimization step: 4970. Total energy = 4138.9354 kcal/mol (4134.1228 without restraints) Performing minimization step: 4971. Total energy = 4138.5307 kcal/mol (4133.7195 without restraints) Performing minimization step: 4972. Total energy = 4138.1252 kcal/mol (4133.3152 without restraints) Performing minimization step: 4973. Total energy = 4137.7181 kcal/mol (4132.9095 without restraints) Performing minimization step: 4974. Total energy = 4137.3093 kcal/mol (4132.5019 without restraints) Performing minimization step: 4975. Total energy = 4136.8988 kcal/mol (4132.0927 without restraints) Performing minimization step: 4976. Total energy = 4136.4873 kcal/mol (4131.6826 without restraints) Performing minimization step: 4977. Total energy = 4136.0740 kcal/mol (4131.2704 without restraints) Performing minimization step: 4978. Total energy = 4135.6585 kcal/mol (4130.8562 without restraints) Performing minimization step: 4979. Total energy = 4135.2415 kcal/mol (4130.4405 without restraints) Performing minimization step: 4980. Total energy = 4134.8231 kcal/mol (4130.0232 without restraints) Performing minimization step: 4981. Total energy = 4134.4024 kcal/mol (4129.6037 without restraints) Performing minimization step: 4982. Total energy = 4133.9800 kcal/mol (4129.1825 without restraints) Performing minimization step: 4983. Total energy = 4133.5557 kcal/mol (4128.7594 without restraints) Performing minimization step: 4984. Total energy = 4133.1299 kcal/mol (4128.3347 without restraints) Performing minimization step: 4985. Total energy = 4132.7021 kcal/mol (4127.9082 without restraints) Performing minimization step: 4986. Total energy = 4132.2721 kcal/mol (4127.4793 without restraints) Performing minimization step: 4987. Total energy = 4131.8399 kcal/mol (4127.0482 without restraints) Performing minimization step: 4988. Total energy = 4131.4056 kcal/mol (4126.6150 without restraints) Performing minimization step: 4989. Total energy = 4130.9691 kcal/mol (4126.1796 without restraints) Performing minimization step: 4990. Total energy = 4130.5305 kcal/mol (4125.7420 without restraints) Performing minimization step: 4991. Total energy = 4130.0898 kcal/mol (4125.3026 without restraints) Performing minimization step: 4992. Total energy = 4129.6466 kcal/mol (4124.8604 without restraints) Performing minimization step: 4993. Total energy = 4129.2012 kcal/mol (4124.4161 without restraints) Performing minimization step: 4994. Total energy = 4128.7532 kcal/mol (4123.9691 without restraints) Performing minimization step: 4995. Total energy = 4128.3028 kcal/mol (4123.5198 without restraints) Performing minimization step: 4996. Total energy = 4127.8504 kcal/mol (4123.0684 without restraints) Performing minimization step: 4997. Total energy = 4127.3955 kcal/mol (4122.6146 without restraints) Performing minimization step: 4998. Total energy = 4126.9381 kcal/mol (4122.1581 without restraints) Performing minimization step: 4999. Total energy = 4126.4776 kcal/mol (4121.6987 without restraints) Performing minimization step: 5000. Total energy = 4126.0151 kcal/mol (4121.2371 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/28a606ec/tmp/CPMA2_refx/CPMA2_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to CPMA2_refx.pdb DONE!