============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr.pdb ============================================================================= Atom's 45 C4 residue renamed to RG3 Atom's 44 N3 residue renamed to RG3 Atom's 43 N2 residue renamed to RG3 Atom's 42 C2 residue renamed to RG3 Atom's 41 N1 residue renamed to RG3 Atom's 40 O6 residue renamed to RG3 Atom's 39 C6 residue renamed to RG3 Atom's 38 C5 residue renamed to RG3 Atom's 37 N7 residue renamed to RG3 Atom's 36 C8 residue renamed to RG3 Atom's 35 N9 residue renamed to RG3 Atom's 34 C1' residue renamed to RG3 Atom's 33 O2' residue renamed to RG3 Atom's 32 C2' residue renamed to RG3 Atom's 31 O3' residue renamed to RG3 Atom's 30 C3' residue renamed to RG3 Atom's 29 O4' residue renamed to RG3 Atom's 28 C4' residue renamed to RG3 Atom's 27 C5' residue renamed to RG3 Atom's 26 O5' residue renamed to RG3 Atom's 25 OP2 residue renamed to RG3 Atom's 24 OP1 residue renamed to RG3 Atom's 23 P residue renamed to RG3 Missing atom added: ATOM 23 H5'1 A A 51 292.659 277.925 283.721 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 51 292.003 276.830 285.065 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 51 293.430 278.713 285.657 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 51 290.573 279.229 286.413 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 51 292.192 282.092 285.123 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 51 289.944 280.723 286.699 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 51 290.629 281.108 287.874 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 51 290.417 280.244 282.654 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 51 288.388 284.278 280.755 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 51 288.404 285.914 281.246 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 51 290.874 286.496 285.266 1.00 0.00 H Missing atom added: ATOM 24 H5'1 RG3 A 52 294.859 277.849 289.096 1.00 0.00 H Missing atom added: ATOM 25 H5'2 RG3 A 52 293.372 277.916 290.199 1.00 0.00 H Missing atom added: ATOM 26 H4' RG3 A 52 294.897 276.995 291.341 1.00 0.00 H Missing atom added: ATOM 27 H3' RG3 A 52 293.053 278.575 292.407 1.00 0.00 H Missing atom added: ATOM 30 H1' RG3 A 52 296.571 279.099 293.670 1.00 0.00 H Missing atom added: ATOM 28 H2' RG3 A 52 294.128 278.403 294.549 1.00 0.00 H Missing atom added: ATOM 29 HO'2 RG3 A 52 295.168 276.352 293.552 1.00 0.00 H Missing atom added: ATOM 31 H8 RG3 A 52 293.906 280.966 291.576 1.00 0.00 H Missing atom added: ATOM 34 H1 RG3 A 52 295.041 283.818 297.753 1.00 0.00 H Missing atom added: ATOM 32 H21 RG3 A 52 296.703 280.567 297.804 1.00 0.00 H Missing atom added: ATOM 33 H22 RG3 A 52 295.822 281.719 298.638 1.00 0.00 H Missing atom added: ATOM 35 H3T RG3 A 52 294.399 276.125 292.822 1.00 0.00 H Missing atom added: ATOM 3 OP3 A A 51 290.846 276.897 281.756 1.00109.76 O Number of atoms: 69 Number of residues: 2 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 74 Number of angles built: 130 Number of dihedrals built: 195 Number of impropers built: 15 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 2142 Number of van der Waals pairs: 1737 Number of H-bonds built: 0 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 0 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 2496.9575 kcal/mol (2494.8781 without restraints) Performing minimization step: 2. Total energy = 2479.4390 kcal/mol (2477.3827 without restraints) Performing minimization step: 3. Total energy = 2462.1147 kcal/mol (2460.0812 without restraints) Performing minimization step: 4. Total energy = 2444.9822 kcal/mol (2442.9712 without restraints) Performing minimization step: 5. Total energy = 2428.0392 kcal/mol (2426.0505 without restraints) Performing minimization step: 6. Total energy = 2411.2834 kcal/mol (2409.3166 without restraints) Performing minimization step: 7. Total energy = 2394.7125 kcal/mol (2392.7673 without restraints) Performing minimization step: 8. Total energy = 2378.3241 kcal/mol (2376.4004 without restraints) Performing minimization step: 9. Total energy = 2362.1162 kcal/mol (2360.2137 without restraints) Performing minimization step: 10. Total energy = 2346.0864 kcal/mol (2344.2048 without restraints) Performing minimization step: 11. Total energy = 2330.2327 kcal/mol (2328.3718 without restraints) Performing minimization step: 12. Total energy = 2314.5529 kcal/mol (2312.7123 without restraints) Performing minimization step: 13. Total energy = 2299.0448 kcal/mol (2297.2244 without restraints) Performing minimization step: 14. Total energy = 2283.7064 kcal/mol (2281.9059 without restraints) Performing minimization step: 15. Total energy = 2268.5356 kcal/mol (2266.7548 without restraints) Performing minimization step: 16. Total energy = 2253.5304 kcal/mol (2251.7690 without restraints) Performing minimization step: 17. Total energy = 2238.6888 kcal/mol (2236.9465 without restraints) Performing minimization step: 18. Total energy = 2224.0087 kcal/mol (2222.2854 without restraints) Performing minimization step: 19. Total energy = 2209.4883 kcal/mol (2207.7837 without restraints) Performing minimization step: 20. Total energy = 2195.1256 kcal/mol (2193.4395 without restraints) Performing minimization step: 21. Total energy = 2180.9187 kcal/mol (2179.2509 without restraints) Performing minimization step: 22. Total energy = 2166.8656 kcal/mol (2165.2159 without restraints) Performing minimization step: 23. Total energy = 2152.9647 kcal/mol (2151.3328 without restraints) Performing minimization step: 24. Total energy = 2139.2139 kcal/mol (2137.5997 without restraints) Performing minimization step: 25. Total energy = 2125.6116 kcal/mol (2124.0147 without restraints) Performing minimization step: 26. Total energy = 2112.1558 kcal/mol (2110.5762 without restraints) Performing minimization step: 27. Total energy = 2098.8449 kcal/mol (2097.2823 without restraints) Performing minimization step: 28. Total energy = 2085.6772 kcal/mol (2084.1313 without restraints) Performing minimization step: 29. Total energy = 2072.6508 kcal/mol (2071.1215 without restraints) Performing minimization step: 30. Total energy = 2059.7640 kcal/mol (2058.2512 without restraints) Performing minimization step: 31. Total energy = 2047.0153 kcal/mol (2045.5186 without restraints) Performing minimization step: 32. Total energy = 2034.4030 kcal/mol (2032.9223 without restraints) Performing minimization step: 33. Total energy = 2021.9253 kcal/mol (2020.4604 without restraints) Performing minimization step: 34. Total energy = 2009.5808 kcal/mol (2008.1315 without restraints) Performing minimization step: 35. Total energy = 1997.3677 kcal/mol (1995.9338 without restraints) Performing minimization step: 36. Total energy = 1985.2846 kcal/mol (1983.8660 without restraints) Performing minimization step: 37. Total energy = 1973.3298 kcal/mol (1971.9263 without restraints) Performing minimization step: 38. Total energy = 1961.5019 kcal/mol (1960.1132 without restraints) Performing minimization step: 39. Total energy = 1949.7993 kcal/mol (1948.4253 without restraints) Performing minimization step: 40. Total energy = 1938.2205 kcal/mol (1936.8611 without restraints) Performing minimization step: 41. Total energy = 1926.7641 kcal/mol (1925.4190 without restraints) Performing minimization step: 42. Total energy = 1915.4285 kcal/mol (1914.0976 without restraints) Performing minimization step: 43. Total energy = 1904.2124 kcal/mol (1902.8955 without restraints) Performing minimization step: 44. Total energy = 1893.1143 kcal/mol (1891.8113 without restraints) Performing minimization step: 45. Total energy = 1882.1329 kcal/mol (1880.8435 without restraints) Performing minimization step: 46. Total energy = 1871.2666 kcal/mol (1869.9908 without restraints) Performing minimization step: 47. Total energy = 1860.5143 kcal/mol (1859.2518 without restraints) Performing minimization step: 48. Total energy = 1849.8744 kcal/mol (1848.6251 without restraints) Performing minimization step: 49. Total energy = 1839.3457 kcal/mol (1838.1094 without restraints) Performing minimization step: 50. Total energy = 1828.9268 kcal/mol (1827.7035 without restraints) Performing minimization step: 51. Total energy = 1818.6165 kcal/mol (1817.4059 without restraints) Performing minimization step: 52. Total energy = 1808.4134 kcal/mol (1807.2154 without restraints) Performing minimization step: 53. Total energy = 1798.3163 kcal/mol (1797.1307 without restraints) Performing minimization step: 54. Total energy = 1788.3240 kcal/mol (1787.1507 without restraints) Performing minimization step: 55. Total energy = 1778.4351 kcal/mol (1777.2740 without restraints) Performing minimization step: 56. Total energy = 1768.6485 kcal/mol (1767.4994 without restraints) Performing minimization step: 57. Total energy = 1758.9630 kcal/mol (1757.8257 without restraints) Performing minimization step: 58. Total energy = 1749.3773 kcal/mol (1748.2517 without restraints) Performing minimization step: 59. Total energy = 1739.8903 kcal/mol (1738.7763 without restraints) Performing minimization step: 60. Total energy = 1730.5008 kcal/mol (1729.3983 without restraints) Performing minimization step: 61. Total energy = 1721.2077 kcal/mol (1720.1164 without restraints) Performing minimization step: 62. Total energy = 1712.0098 kcal/mol (1710.9297 without restraints) Performing minimization step: 63. Total energy = 1702.9060 kcal/mol (1701.8370 without restraints) Performing minimization step: 64. Total energy = 1693.8952 kcal/mol (1692.8371 without restraints) Performing minimization step: 65. Total energy = 1684.9764 kcal/mol (1683.9290 without restraints) Performing minimization step: 66. Total energy = 1676.1483 kcal/mol (1675.1116 without restraints) Performing minimization step: 67. Total energy = 1667.4100 kcal/mol (1666.3838 without restraints) Performing minimization step: 68. Total energy = 1658.7604 kcal/mol (1657.7446 without restraints) Performing minimization step: 69. Total energy = 1650.1984 kcal/mol (1649.1929 without restraints) Performing minimization step: 70. Total energy = 1641.7231 kcal/mol (1640.7278 without restraints) Performing minimization step: 71. Total energy = 1633.3333 kcal/mol (1632.3481 without restraints) Performing minimization step: 72. Total energy = 1625.0282 kcal/mol (1624.0529 without restraints) Performing minimization step: 73. Total energy = 1616.8067 kcal/mol (1615.8412 without restraints) Performing minimization step: 74. Total energy = 1608.6678 kcal/mol (1607.7120 without restraints) Performing minimization step: 75. Total energy = 1600.6106 kcal/mol (1599.6643 without restraints) Performing minimization step: 76. Total energy = 1592.6340 kcal/mol (1591.6973 without restraints) Performing minimization step: 77. Total energy = 1584.7373 kcal/mol (1583.8098 without restraints) Performing minimization step: 78. Total energy = 1576.9193 kcal/mol (1576.0012 without restraints) Performing minimization step: 79. Total energy = 1569.1793 kcal/mol (1568.2703 without restraints) Performing minimization step: 80. Total energy = 1561.5162 kcal/mol (1560.6163 without restraints) Performing minimization step: 81. Total energy = 1553.9293 kcal/mol (1553.0382 without restraints) Performing minimization step: 82. Total energy = 1546.4176 kcal/mol (1545.5353 without restraints) Performing minimization step: 83. Total energy = 1538.9801 kcal/mol (1538.1066 without restraints) Performing minimization step: 84. Total energy = 1531.6162 kcal/mol (1530.7513 without restraints) Performing minimization step: 85. Total energy = 1524.3248 kcal/mol (1523.4685 without restraints) Performing minimization step: 86. Total energy = 1517.1052 kcal/mol (1516.2573 without restraints) Performing minimization step: 87. Total energy = 1509.9566 kcal/mol (1509.1169 without restraints) Performing minimization step: 88. Total energy = 1502.8780 kcal/mol (1502.0466 without restraints) Performing minimization step: 89. Total energy = 1495.8687 kcal/mol (1495.0454 without restraints) Performing minimization step: 90. Total energy = 1488.9278 kcal/mol (1488.1126 without restraints) Performing minimization step: 91. Total energy = 1482.0547 kcal/mol (1481.2474 without restraints) Performing minimization step: 92. Total energy = 1475.2484 kcal/mol (1474.4489 without restraints) Performing minimization step: 93. Total energy = 1468.5082 kcal/mol (1467.7165 without restraints) Performing minimization step: 94. Total energy = 1461.8334 kcal/mol (1461.0494 without restraints) Performing minimization step: 95. Total energy = 1455.2231 kcal/mol (1454.4467 without restraints) Performing minimization step: 96. Total energy = 1448.6767 kcal/mol (1447.9078 without restraints) Performing minimization step: 97. Total energy = 1442.1934 kcal/mol (1441.4318 without restraints) Performing minimization step: 98. Total energy = 1435.7724 kcal/mol (1435.0182 without restraints) Performing minimization step: 99. Total energy = 1429.4131 kcal/mol (1428.6661 without restraints) Performing minimization step: 100. Total energy = 1423.1147 kcal/mol (1422.3748 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 101. Total energy = 1416.8765 kcal/mol (1416.1437 without restraints) Performing minimization step: 102. Total energy = 1410.6978 kcal/mol (1409.9720 without restraints) Performing minimization step: 103. Total energy = 1404.5779 kcal/mol (1403.8590 without restraints) Performing minimization step: 104. Total energy = 1398.5162 kcal/mol (1397.8042 without restraints) Performing minimization step: 105. Total energy = 1392.5120 kcal/mol (1391.8067 without restraints) Performing minimization step: 106. Total energy = 1386.5646 kcal/mol (1385.8659 without restraints) Performing minimization step: 107. Total energy = 1380.6733 kcal/mol (1379.9812 without restraints) Performing minimization step: 108. Total energy = 1374.8375 kcal/mol (1374.1520 without restraints) Performing minimization step: 109. Total energy = 1369.0566 kcal/mol (1368.3775 without restraints) Performing minimization step: 110. Total energy = 1363.3299 kcal/mol (1362.6572 without restraints) Performing minimization step: 111. Total energy = 1357.6568 kcal/mol (1356.9904 without restraints) Performing minimization step: 112. Total energy = 1352.0367 kcal/mol (1351.3765 without restraints) Performing minimization step: 113. Total energy = 1346.4690 kcal/mol (1345.8149 without restraints) Performing minimization step: 114. Total energy = 1340.9530 kcal/mol (1340.3050 without restraints) Performing minimization step: 115. Total energy = 1335.4882 kcal/mol (1334.8462 without restraints) Performing minimization step: 116. Total energy = 1330.0740 kcal/mol (1329.4379 without restraints) Performing minimization step: 117. Total energy = 1324.7098 kcal/mol (1324.0796 without restraints) Performing minimization step: 118. Total energy = 1319.3950 kcal/mol (1318.7706 without restraints) Performing minimization step: 119. Total energy = 1314.1291 kcal/mol (1313.5104 without restraints) Performing minimization step: 120. Total energy = 1308.9114 kcal/mol (1308.2984 without restraints) Performing minimization step: 121. Total energy = 1303.7415 kcal/mol (1303.1340 without restraints) Performing minimization step: 122. Total energy = 1298.6187 kcal/mol (1298.0168 without restraints) Performing minimization step: 123. Total energy = 1293.5426 kcal/mol (1292.9462 without restraints) Performing minimization step: 124. Total energy = 1288.5127 kcal/mol (1287.9216 without restraints) Performing minimization step: 125. Total energy = 1283.5282 kcal/mol (1282.9426 without restraints) Performing minimization step: 126. Total energy = 1278.5889 kcal/mol (1278.0085 without restraints) Performing minimization step: 127. Total energy = 1273.6941 kcal/mol (1273.1189 without restraints) Performing minimization step: 128. Total energy = 1268.8433 kcal/mol (1268.2733 without restraints) Performing minimization step: 129. Total energy = 1264.0360 kcal/mol (1263.4711 without restraints) Performing minimization step: 130. Total energy = 1259.2717 kcal/mol (1258.7119 without restraints) Performing minimization step: 131. Total energy = 1254.5500 kcal/mol (1253.9951 without restraints) Performing minimization step: 132. Total energy = 1249.8703 kcal/mol (1249.3204 without restraints) Performing minimization step: 133. Total energy = 1245.2321 kcal/mol (1244.6871 without restraints) Performing minimization step: 134. Total energy = 1240.6351 kcal/mol (1240.0949 without restraints) Performing minimization step: 135. Total energy = 1236.0786 kcal/mol (1235.5432 without restraints) Performing minimization step: 136. Total energy = 1231.5624 kcal/mol (1231.0316 without restraints) Performing minimization step: 137. Total energy = 1227.0857 kcal/mol (1226.5597 without restraints) Performing minimization step: 138. Total energy = 1222.6484 kcal/mol (1222.1269 without restraints) Performing minimization step: 139. Total energy = 1218.2498 kcal/mol (1217.7329 without restraints) Performing minimization step: 140. Total energy = 1213.8895 kcal/mol (1213.3771 without restraints) Performing minimization step: 141. Total energy = 1209.5672 kcal/mol (1209.0592 without restraints) Performing minimization step: 142. Total energy = 1205.2823 kcal/mol (1204.7788 without restraints) Performing minimization step: 143. Total energy = 1201.0345 kcal/mol (1200.5353 without restraints) Performing minimization step: 144. Total energy = 1196.8233 kcal/mol (1196.3284 without restraints) Performing minimization step: 145. Total energy = 1192.6483 kcal/mol (1192.1576 without restraints) Performing minimization step: 146. Total energy = 1188.5091 kcal/mol (1188.0226 without restraints) Performing minimization step: 147. Total energy = 1184.4053 kcal/mol (1183.9229 without restraints) Performing minimization step: 148. Total energy = 1180.3364 kcal/mol (1179.8582 without restraints) Performing minimization step: 149. Total energy = 1176.3021 kcal/mol (1175.8280 without restraints) Performing minimization step: 150. Total energy = 1172.3021 kcal/mol (1171.8319 without restraints) Performing minimization step: 151. Total energy = 1168.3358 kcal/mol (1167.8696 without restraints) Performing minimization step: 152. Total energy = 1164.4029 kcal/mol (1163.9407 without restraints) Performing minimization step: 153. Total energy = 1160.5031 kcal/mol (1160.0447 without restraints) Performing minimization step: 154. Total energy = 1156.6359 kcal/mol (1156.1814 without restraints) Performing minimization step: 155. Total energy = 1152.8011 kcal/mol (1152.3503 without restraints) Performing minimization step: 156. Total energy = 1148.9981 kcal/mol (1148.5511 without restraints) Performing minimization step: 157. Total energy = 1145.2267 kcal/mol (1144.7834 without restraints) Performing minimization step: 158. Total energy = 1141.4865 kcal/mol (1141.0469 without restraints) Performing minimization step: 159. Total energy = 1137.7772 kcal/mol (1137.3412 without restraints) Performing minimization step: 160. Total energy = 1134.0984 kcal/mol (1133.6659 without restraints) Performing minimization step: 161. Total energy = 1130.4497 kcal/mol (1130.0208 without restraints) Performing minimization step: 162. Total energy = 1126.8308 kcal/mol (1126.4054 without restraints) Performing minimization step: 163. Total energy = 1123.2414 kcal/mol (1122.8195 without restraints) Performing minimization step: 164. Total energy = 1119.6812 kcal/mol (1119.2626 without restraints) Performing minimization step: 165. Total energy = 1116.1497 kcal/mol (1115.7346 without restraints) Performing minimization step: 166. Total energy = 1112.6468 kcal/mol (1112.2350 without restraints) Performing minimization step: 167. Total energy = 1109.1720 kcal/mol (1108.7635 without restraints) Performing minimization step: 168. Total energy = 1105.7251 kcal/mol (1105.3199 without restraints) Performing minimization step: 169. Total energy = 1102.3057 kcal/mol (1101.9037 without restraints) Performing minimization step: 170. Total energy = 1098.9136 kcal/mol (1098.5148 without restraints) Performing minimization step: 171. Total energy = 1095.5483 kcal/mol (1095.1527 without restraints) Performing minimization step: 172. Total energy = 1092.2097 kcal/mol (1091.8172 without restraints) Performing minimization step: 173. Total energy = 1088.8974 kcal/mol (1088.5080 without restraints) Performing minimization step: 174. Total energy = 1085.6111 kcal/mol (1085.2248 without restraints) Performing minimization step: 175. Total energy = 1082.3506 kcal/mol (1081.9672 without restraints) Performing minimization step: 176. Total energy = 1079.1155 kcal/mol (1078.7351 without restraints) Performing minimization step: 177. Total energy = 1075.9055 kcal/mol (1075.5281 without restraints) Performing minimization step: 178. Total energy = 1072.7205 kcal/mol (1072.3460 without restraints) Performing minimization step: 179. Total energy = 1069.5600 kcal/mol (1069.1884 without restraints) Performing minimization step: 180. Total energy = 1066.4238 kcal/mol (1066.0551 without restraints) Performing minimization step: 181. Total energy = 1063.3117 kcal/mol (1062.9458 without restraints) Performing minimization step: 182. Total energy = 1060.2234 kcal/mol (1059.8603 without restraints) Performing minimization step: 183. Total energy = 1057.1586 kcal/mol (1056.7983 without restraints) Performing minimization step: 184. Total energy = 1054.1171 kcal/mol (1053.7594 without restraints) Performing minimization step: 185. Total energy = 1051.0985 kcal/mol (1050.7436 without restraints) Performing minimization step: 186. Total energy = 1048.1027 kcal/mol (1047.7504 without restraints) Performing minimization step: 187. Total energy = 1045.1294 kcal/mol (1044.7797 without restraints) Performing minimization step: 188. Total energy = 1042.1783 kcal/mol (1041.8313 without restraints) Performing minimization step: 189. Total energy = 1039.2492 kcal/mol (1038.9047 without restraints) Performing minimization step: 190. Total energy = 1036.3418 kcal/mol (1035.9999 without restraints) Performing minimization step: 191. Total energy = 1033.4560 kcal/mol (1033.1166 without restraints) Performing minimization step: 192. Total energy = 1030.5914 kcal/mol (1030.2545 without restraints) Performing minimization step: 193. Total energy = 1027.7478 kcal/mol (1027.4134 without restraints) Performing minimization step: 194. Total energy = 1024.9251 kcal/mol (1024.5931 without restraints) Performing minimization step: 195. Total energy = 1022.1229 kcal/mol (1021.7933 without restraints) Performing minimization step: 196. Total energy = 1019.3411 kcal/mol (1019.0139 without restraints) Performing minimization step: 197. Total energy = 1016.5793 kcal/mol (1016.2545 without restraints) Performing minimization step: 198. Total energy = 1013.8375 kcal/mol (1013.5150 without restraints) Performing minimization step: 199. Total energy = 1011.1153 kcal/mol (1010.7952 without restraints) Performing minimization step: 200. Total energy = 1008.4127 kcal/mol (1008.0948 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 201. Total energy = 1005.7292 kcal/mol (1005.4136 without restraints) Performing minimization step: 202. Total energy = 1003.0648 kcal/mol (1002.7514 without restraints) Performing minimization step: 203. Total energy = 1000.4192 kcal/mol (1000.1081 without restraints) Performing minimization step: 204. Total energy = 997.7923 kcal/mol (997.4833 without restraints) Performing minimization step: 205. Total energy = 995.1837 kcal/mol (994.8769 without restraints) Performing minimization step: 206. Total energy = 992.5934 kcal/mol (992.2887 without restraints) Performing minimization step: 207. Total energy = 990.0211 kcal/mol (989.7186 without restraints) Performing minimization step: 208. Total energy = 987.4667 kcal/mol (987.1662 without restraints) Performing minimization step: 209. Total energy = 984.9298 kcal/mol (984.6314 without restraints) Performing minimization step: 210. Total energy = 982.4104 kcal/mol (982.1141 without restraints) Performing minimization step: 211. Total energy = 979.9083 kcal/mol (979.6139 without restraints) Performing minimization step: 212. Total energy = 977.4232 kcal/mol (977.1308 without restraints) Performing minimization step: 213. Total energy = 974.9549 kcal/mol (974.6646 without restraints) Performing minimization step: 214. Total energy = 972.5034 kcal/mol (972.2150 without restraints) Performing minimization step: 215. Total energy = 970.0684 kcal/mol (969.7820 without restraints) Performing minimization step: 216. Total energy = 967.6498 kcal/mol (967.3652 without restraints) Performing minimization step: 217. Total energy = 965.2473 kcal/mol (964.9646 without restraints) Performing minimization step: 218. Total energy = 962.8607 kcal/mol (962.5800 without restraints) Performing minimization step: 219. Total energy = 960.4900 kcal/mol (960.2111 without restraints) Performing minimization step: 220. Total energy = 958.1350 kcal/mol (957.8579 without restraints) Performing minimization step: 221. Total energy = 955.7954 kcal/mol (955.5202 without restraints) Performing minimization step: 222. Total energy = 953.4711 kcal/mol (953.1977 without restraints) Performing minimization step: 223. Total energy = 951.1620 kcal/mol (950.8904 without restraints) Performing minimization step: 224. Total energy = 948.8679 kcal/mol (948.5980 without restraints) Performing minimization step: 225. Total energy = 946.5886 kcal/mol (946.3205 without restraints) Performing minimization step: 226. Total energy = 944.3240 kcal/mol (944.0576 without restraints) Performing minimization step: 227. Total energy = 942.0739 kcal/mol (941.8092 without restraints) Performing minimization step: 228. Total energy = 939.8382 kcal/mol (939.5751 without restraints) Performing minimization step: 229. Total energy = 937.6167 kcal/mol (937.3553 without restraints) Performing minimization step: 230. Total energy = 935.4092 kcal/mol (935.1495 without restraints) Performing minimization step: 231. Total energy = 933.2156 kcal/mol (932.9575 without restraints) Performing minimization step: 232. Total energy = 931.0359 kcal/mol (930.7794 without restraints) Performing minimization step: 233. Total energy = 928.8697 kcal/mol (928.6148 without restraints) Performing minimization step: 234. Total energy = 926.7170 kcal/mol (926.4637 without restraints) Performing minimization step: 235. Total energy = 924.5777 kcal/mol (924.3259 without restraints) Performing minimization step: 236. Total energy = 922.4515 kcal/mol (922.2014 without restraints) Performing minimization step: 237. Total energy = 920.3385 kcal/mol (920.0898 without restraints) Performing minimization step: 238. Total energy = 918.2383 kcal/mol (917.9912 without restraints) Performing minimization step: 239. Total energy = 916.1509 kcal/mol (915.9053 without restraints) Performing minimization step: 240. Total energy = 914.0762 kcal/mol (913.8321 without restraints) Performing minimization step: 241. Total energy = 912.0141 kcal/mol (911.7714 without restraints) Performing minimization step: 242. Total energy = 909.9643 kcal/mol (909.7231 without restraints) Performing minimization step: 243. Total energy = 907.9268 kcal/mol (907.6870 without restraints) Performing minimization step: 244. Total energy = 905.9014 kcal/mol (905.6631 without restraints) Performing minimization step: 245. Total energy = 903.8881 kcal/mol (903.6512 without restraints) Performing minimization step: 246. Total energy = 901.8867 kcal/mol (901.6511 without restraints) Performing minimization step: 247. Total energy = 899.8970 kcal/mol (899.6628 without restraints) Performing minimization step: 248. Total energy = 897.9190 kcal/mol (897.6862 without restraints) Performing minimization step: 249. Total energy = 895.9525 kcal/mol (895.7211 without restraints) Performing minimization step: 250. Total energy = 893.9974 kcal/mol (893.7674 without restraints) Performing minimization step: 251. Total energy = 892.0537 kcal/mol (891.8249 without restraints) Performing minimization step: 252. Total energy = 890.1211 kcal/mol (889.8937 without restraints) Performing minimization step: 253. Total energy = 888.1996 kcal/mol (887.9735 without restraints) Performing minimization step: 254. Total energy = 886.2891 kcal/mol (886.0643 without restraints) Performing minimization step: 255. Total energy = 884.3894 kcal/mol (884.1659 without restraints) Performing minimization step: 256. Total energy = 882.5005 kcal/mol (882.2782 without restraints) Performing minimization step: 257. Total energy = 880.6222 kcal/mol (880.4012 without restraints) Performing minimization step: 258. Total energy = 878.7545 kcal/mol (878.5346 without restraints) Performing minimization step: 259. Total energy = 876.8972 kcal/mol (876.6785 without restraints) Performing minimization step: 260. Total energy = 875.0501 kcal/mol (874.8327 without restraints) Performing minimization step: 261. Total energy = 873.2134 kcal/mol (872.9972 without restraints) Performing minimization step: 262. Total energy = 871.3867 kcal/mol (871.1717 without restraints) Performing minimization step: 263. Total energy = 869.5700 kcal/mol (869.3562 without restraints) Performing minimization step: 264. Total energy = 867.7633 kcal/mol (867.5506 without restraints) Performing minimization step: 265. Total energy = 865.9664 kcal/mol (865.7549 without restraints) Performing minimization step: 266. Total energy = 864.1792 kcal/mol (863.9688 without restraints) Performing minimization step: 267. Total energy = 862.4017 kcal/mol (862.1924 without restraints) Performing minimization step: 268. Total energy = 860.6336 kcal/mol (860.4255 without restraints) Performing minimization step: 269. Total energy = 858.8751 kcal/mol (858.6681 without restraints) Performing minimization step: 270. Total energy = 857.1259 kcal/mol (856.9199 without restraints) Performing minimization step: 271. Total energy = 855.3859 kcal/mol (855.1811 without restraints) Performing minimization step: 272. Total energy = 853.6551 kcal/mol (853.4514 without restraints) Performing minimization step: 273. Total energy = 851.9334 kcal/mol (851.7307 without restraints) Performing minimization step: 274. Total energy = 850.2207 kcal/mol (850.0191 without restraints) Performing minimization step: 275. Total energy = 848.5169 kcal/mol (848.3163 without restraints) Performing minimization step: 276. Total energy = 846.8219 kcal/mol (846.6224 without restraints) Performing minimization step: 277. Total energy = 845.1357 kcal/mol (844.9372 without restraints) Performing minimization step: 278. Total energy = 843.4581 kcal/mol (843.2606 without restraints) Performing minimization step: 279. Total energy = 841.7891 kcal/mol (841.5926 without restraints) Performing minimization step: 280. Total energy = 840.1286 kcal/mol (839.9331 without restraints) Performing minimization step: 281. Total energy = 838.4765 kcal/mol (838.2820 without restraints) Performing minimization step: 282. Total energy = 836.8328 kcal/mol (836.6392 without restraints) Performing minimization step: 283. Total energy = 835.1973 kcal/mol (835.0047 without restraints) Performing minimization step: 284. Total energy = 833.5699 kcal/mol (833.3783 without restraints) Performing minimization step: 285. Total energy = 831.9507 kcal/mol (831.7601 without restraints) Performing minimization step: 286. Total energy = 830.3395 kcal/mol (830.1498 without restraints) Performing minimization step: 287. Total energy = 828.7363 kcal/mol (828.5475 without restraints) Performing minimization step: 288. Total energy = 827.1409 kcal/mol (826.9530 without restraints) Performing minimization step: 289. Total energy = 825.5533 kcal/mol (825.3664 without restraints) Performing minimization step: 290. Total energy = 823.9735 kcal/mol (823.7875 without restraints) Performing minimization step: 291. Total energy = 822.4013 kcal/mol (822.2162 without restraints) Performing minimization step: 292. Total energy = 820.8368 kcal/mol (820.6525 without restraints) Performing minimization step: 293. Total energy = 819.2797 kcal/mol (819.0964 without restraints) Performing minimization step: 294. Total energy = 817.7301 kcal/mol (817.5476 without restraints) Performing minimization step: 295. Total energy = 816.1879 kcal/mol (816.0063 without restraints) Performing minimization step: 296. Total energy = 814.6530 kcal/mol (814.4723 without restraints) Performing minimization step: 297. Total energy = 813.1254 kcal/mol (812.9455 without restraints) Performing minimization step: 298. Total energy = 811.6049 kcal/mol (811.4259 without restraints) Performing minimization step: 299. Total energy = 810.0916 kcal/mol (809.9134 without restraints) Performing minimization step: 300. Total energy = 808.5853 kcal/mol (808.4079 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 301. Total energy = 807.0860 kcal/mol (806.9095 without restraints) Performing minimization step: 302. Total energy = 805.5937 kcal/mol (805.4180 without restraints) Performing minimization step: 303. Total energy = 804.1082 kcal/mol (803.9333 without restraints) Performing minimization step: 304. Total energy = 802.6296 kcal/mol (802.4554 without restraints) Performing minimization step: 305. Total energy = 801.1577 kcal/mol (800.9843 without restraints) Performing minimization step: 306. Total energy = 799.6925 kcal/mol (799.5199 without restraints) Performing minimization step: 307. Total energy = 798.2339 kcal/mol (798.0621 without restraints) Performing minimization step: 308. Total energy = 796.7819 kcal/mol (796.6109 without restraints) Performing minimization step: 309. Total energy = 795.3364 kcal/mol (795.1662 without restraints) Performing minimization step: 310. Total energy = 793.8974 kcal/mol (793.7279 without restraints) Performing minimization step: 311. Total energy = 792.4647 kcal/mol (792.2960 without restraints) Performing minimization step: 312. Total energy = 791.0385 kcal/mol (790.8705 without restraints) Performing minimization step: 313. Total energy = 789.6185 kcal/mol (789.4513 without restraints) Performing minimization step: 314. Total energy = 788.2048 kcal/mol (788.0383 without restraints) Performing minimization step: 315. Total energy = 786.7972 kcal/mol (786.6315 without restraints) Performing minimization step: 316. Total energy = 785.3958 kcal/mol (785.2308 without restraints) Performing minimization step: 317. Total energy = 784.0005 kcal/mol (783.8362 without restraints) Performing minimization step: 318. Total energy = 782.6112 kcal/mol (782.4476 without restraints) Performing minimization step: 319. Total energy = 781.2279 kcal/mol (781.0650 without restraints) Performing minimization step: 320. Total energy = 779.8505 kcal/mol (779.6883 without restraints) Performing minimization step: 321. Total energy = 778.4790 kcal/mol (778.3175 without restraints) Performing minimization step: 322. Total energy = 777.1133 kcal/mol (776.9525 without restraints) Performing minimization step: 323. Total energy = 775.7535 kcal/mol (775.5933 without restraints) Performing minimization step: 324. Total energy = 774.3993 kcal/mol (774.2398 without restraints) Performing minimization step: 325. Total energy = 773.0508 kcal/mol (772.8920 without restraints) Performing minimization step: 326. Total energy = 771.7080 kcal/mol (771.5498 without restraints) Performing minimization step: 327. Total energy = 770.3708 kcal/mol (770.2133 without restraints) Performing minimization step: 328. Total energy = 769.0391 kcal/mol (768.8822 without restraints) Performing minimization step: 329. Total energy = 767.7129 kcal/mol (767.5567 without restraints) Performing minimization step: 330. Total energy = 766.3922 kcal/mol (766.2366 without restraints) Performing minimization step: 331. Total energy = 765.0769 kcal/mol (764.9219 without restraints) Performing minimization step: 332. Total energy = 763.7669 kcal/mol (763.6126 without restraints) Performing minimization step: 333. Total energy = 762.4623 kcal/mol (762.3086 without restraints) Performing minimization step: 334. Total energy = 761.1630 kcal/mol (761.0099 without restraints) Performing minimization step: 335. Total energy = 759.8689 kcal/mol (759.7164 without restraints) Performing minimization step: 336. Total energy = 758.5800 kcal/mol (758.4282 without restraints) Performing minimization step: 337. Total energy = 757.2963 kcal/mol (757.1450 without restraints) Performing minimization step: 338. Total energy = 756.0176 kcal/mol (755.8670 without restraints) Performing minimization step: 339. Total energy = 754.7441 kcal/mol (754.5941 without restraints) Performing minimization step: 340. Total energy = 753.4756 kcal/mol (753.3262 without restraints) Performing minimization step: 341. Total energy = 752.2121 kcal/mol (752.0632 without restraints) Performing minimization step: 342. Total energy = 750.9535 kcal/mol (750.8053 without restraints) Performing minimization step: 343. Total energy = 749.6999 kcal/mol (749.5522 without restraints) Performing minimization step: 344. Total energy = 748.4511 kcal/mol (748.3040 without restraints) Performing minimization step: 345. Total energy = 747.2072 kcal/mol (747.0607 without restraints) Performing minimization step: 346. Total energy = 745.9681 kcal/mol (745.8222 without restraints) Performing minimization step: 347. Total energy = 744.7338 kcal/mol (744.5884 without restraints) Performing minimization step: 348. Total energy = 743.5042 kcal/mol (743.3593 without restraints) Performing minimization step: 349. Total energy = 742.2793 kcal/mol (742.1350 without restraints) Performing minimization step: 350. Total energy = 741.0590 kcal/mol (740.9153 without restraints) Performing minimization step: 351. Total energy = 739.8434 kcal/mol (739.7002 without restraints) Performing minimization step: 352. Total energy = 738.6324 kcal/mol (738.4897 without restraints) Performing minimization step: 353. Total energy = 737.4259 kcal/mol (737.2838 without restraints) Performing minimization step: 354. Total energy = 736.2239 kcal/mol (736.0823 without restraints) Performing minimization step: 355. Total energy = 735.0265 kcal/mol (734.8854 without restraints) Performing minimization step: 356. Total energy = 733.8335 kcal/mol (733.6929 without restraints) Performing minimization step: 357. Total energy = 732.6449 kcal/mol (732.5048 without restraints) Performing minimization step: 358. Total energy = 731.4607 kcal/mol (731.3211 without restraints) Performing minimization step: 359. Total energy = 730.2808 kcal/mol (730.1418 without restraints) Performing minimization step: 360. Total energy = 729.1053 kcal/mol (728.9668 without restraints) Performing minimization step: 361. Total energy = 727.9340 kcal/mol (727.7960 without restraints) Performing minimization step: 362. Total energy = 726.7671 kcal/mol (726.6296 without restraints) Performing minimization step: 363. Total energy = 725.6043 kcal/mol (725.4673 without restraints) Performing minimization step: 364. Total energy = 724.4458 kcal/mol (724.3093 without restraints) Performing minimization step: 365. Total energy = 723.2914 kcal/mol (723.1554 without restraints) Performing minimization step: 366. Total energy = 722.1412 kcal/mol (722.0056 without restraints) Performing minimization step: 367. Total energy = 720.9950 kcal/mol (720.8600 without restraints) Performing minimization step: 368. Total energy = 719.8530 kcal/mol (719.7184 without restraints) Performing minimization step: 369. Total energy = 718.7150 kcal/mol (718.5809 without restraints) Performing minimization step: 370. Total energy = 717.5810 kcal/mol (717.4474 without restraints) Performing minimization step: 371. Total energy = 716.4510 kcal/mol (716.3179 without restraints) Performing minimization step: 372. Total energy = 715.3250 kcal/mol (715.1923 without restraints) Performing minimization step: 373. Total energy = 714.2029 kcal/mol (714.0707 without restraints) Performing minimization step: 374. Total energy = 713.0848 kcal/mol (712.9530 without restraints) Performing minimization step: 375. Total energy = 711.9705 kcal/mol (711.8392 without restraints) Performing minimization step: 376. Total energy = 710.8600 kcal/mol (710.7292 without restraints) Performing minimization step: 377. Total energy = 709.7534 kcal/mol (709.6231 without restraints) Performing minimization step: 378. Total energy = 708.6507 kcal/mol (708.5207 without restraints) Performing minimization step: 379. Total energy = 707.5516 kcal/mol (707.4221 without restraints) Performing minimization step: 380. Total energy = 706.4564 kcal/mol (706.3273 without restraints) Performing minimization step: 381. Total energy = 705.3648 kcal/mol (705.2362 without restraints) Performing minimization step: 382. Total energy = 704.2770 kcal/mol (704.1488 without restraints) Performing minimization step: 383. Total energy = 703.1928 kcal/mol (703.0651 without restraints) Performing minimization step: 384. Total energy = 702.1123 kcal/mol (701.9850 without restraints) Performing minimization step: 385. Total energy = 701.0354 kcal/mol (700.9085 without restraints) Performing minimization step: 386. Total energy = 699.9621 kcal/mol (699.8357 without restraints) Performing minimization step: 387. Total energy = 698.8924 kcal/mol (698.7664 without restraints) Performing minimization step: 388. Total energy = 697.8263 kcal/mol (697.7006 without restraints) Performing minimization step: 389. Total energy = 696.7636 kcal/mol (696.6384 without restraints) Performing minimization step: 390. Total energy = 695.7045 kcal/mol (695.5797 without restraints) Performing minimization step: 391. Total energy = 694.6489 kcal/mol (694.5245 without restraints) Performing minimization step: 392. Total energy = 693.5967 kcal/mol (693.4727 without restraints) Performing minimization step: 393. Total energy = 692.5480 kcal/mol (692.4244 without restraints) Performing minimization step: 394. Total energy = 691.5027 kcal/mol (691.3795 without restraints) Performing minimization step: 395. Total energy = 690.4608 kcal/mol (690.3380 without restraints) Performing minimization step: 396. Total energy = 689.4222 kcal/mol (689.2999 without restraints) Performing minimization step: 397. Total energy = 688.3871 kcal/mol (688.2651 without restraints) Performing minimization step: 398. Total energy = 687.3552 kcal/mol (687.2336 without restraints) Performing minimization step: 399. Total energy = 686.3266 kcal/mol (686.2054 without restraints) Performing minimization step: 400. Total energy = 685.3014 kcal/mol (685.1806 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 401. Total energy = 684.2794 kcal/mol (684.1589 without restraints) Performing minimization step: 402. Total energy = 683.2606 kcal/mol (683.1406 without restraints) Performing minimization step: 403. Total energy = 682.2451 kcal/mol (682.1254 without restraints) Performing minimization step: 404. Total energy = 681.2328 kcal/mol (681.1135 without restraints) Performing minimization step: 405. Total energy = 680.2237 kcal/mol (680.1047 without restraints) Performing minimization step: 406. Total energy = 679.2177 kcal/mol (679.0992 without restraints) Performing minimization step: 407. Total energy = 678.2149 kcal/mol (678.0967 without restraints) Performing minimization step: 408. Total energy = 677.2152 kcal/mol (677.0974 without restraints) Performing minimization step: 409. Total energy = 676.2186 kcal/mol (676.1012 without restraints) Performing minimization step: 410. Total energy = 675.2251 kcal/mol (675.1081 without restraints) Performing minimization step: 411. Total energy = 674.2347 kcal/mol (674.1180 without restraints) Performing minimization step: 412. Total energy = 673.2474 kcal/mol (673.1310 without restraints) Performing minimization step: 413. Total energy = 672.2630 kcal/mol (672.1470 without restraints) Performing minimization step: 414. Total energy = 671.2817 kcal/mol (671.1661 without restraints) Performing minimization step: 415. Total energy = 670.3034 kcal/mol (670.1881 without restraints) Performing minimization step: 416. Total energy = 669.3280 kcal/mol (669.2131 without restraints) Performing minimization step: 417. Total energy = 668.3557 kcal/mol (668.2411 without restraints) Performing minimization step: 418. Total energy = 667.3862 kcal/mol (667.2720 without restraints) Performing minimization step: 419. Total energy = 666.4197 kcal/mol (666.3058 without restraints) Performing minimization step: 420. Total energy = 665.4561 kcal/mol (665.3426 without restraints) Performing minimization step: 421. Total energy = 664.4954 kcal/mol (664.3822 without restraints) Performing minimization step: 422. Total energy = 663.5376 kcal/mol (663.4247 without restraints) Performing minimization step: 423. Total energy = 662.5826 kcal/mol (662.4701 without restraints) Performing minimization step: 424. Total energy = 661.6305 kcal/mol (661.5183 without restraints) Performing minimization step: 425. Total energy = 660.6812 kcal/mol (660.5693 without restraints) Performing minimization step: 426. Total energy = 659.7347 kcal/mol (659.6232 without restraints) Performing minimization step: 427. Total energy = 658.7910 kcal/mol (658.6798 without restraints) Performing minimization step: 428. Total energy = 657.8501 kcal/mol (657.7392 without restraints) Performing minimization step: 429. Total energy = 656.9120 kcal/mol (656.8014 without restraints) Performing minimization step: 430. Total energy = 655.9765 kcal/mol (655.8663 without restraints) Performing minimization step: 431. Total energy = 655.0439 kcal/mol (654.9339 without restraints) Performing minimization step: 432. Total energy = 654.1139 kcal/mol (654.0043 without restraints) Performing minimization step: 433. Total energy = 653.1867 kcal/mol (653.0774 without restraints) Performing minimization step: 434. Total energy = 652.2621 kcal/mol (652.1531 without restraints) Performing minimization step: 435. Total energy = 651.3402 kcal/mol (651.2315 without restraints) Performing minimization step: 436. Total energy = 650.4209 kcal/mol (650.3126 without restraints) Performing minimization step: 437. Total energy = 649.5043 kcal/mol (649.3963 without restraints) Performing minimization step: 438. Total energy = 648.5903 kcal/mol (648.4826 without restraints) Performing minimization step: 439. Total energy = 647.6790 kcal/mol (647.5716 without restraints) Performing minimization step: 440. Total energy = 646.7702 kcal/mol (646.6631 without restraints) Performing minimization step: 441. Total energy = 645.8640 kcal/mol (645.7572 without restraints) Performing minimization step: 442. Total energy = 644.9604 kcal/mol (644.8539 without restraints) Performing minimization step: 443. Total energy = 644.0594 kcal/mol (643.9532 without restraints) Performing minimization step: 444. Total energy = 643.1609 kcal/mol (643.0550 without restraints) Performing minimization step: 445. Total energy = 642.2649 kcal/mol (642.1593 without restraints) Performing minimization step: 446. Total energy = 641.3714 kcal/mol (641.2661 without restraints) Performing minimization step: 447. Total energy = 640.4804 kcal/mol (640.3754 without restraints) Performing minimization step: 448. Total energy = 639.5920 kcal/mol (639.4872 without restraints) Performing minimization step: 449. Total energy = 638.7060 kcal/mol (638.6015 without restraints) Performing minimization step: 450. Total energy = 637.8224 kcal/mol (637.7183 without restraints) Performing minimization step: 451. Total energy = 636.9413 kcal/mol (636.8375 without restraints) Performing minimization step: 452. Total energy = 636.0627 kcal/mol (635.9591 without restraints) Performing minimization step: 453. Total energy = 635.1865 kcal/mol (635.0832 without restraints) Performing minimization step: 454. Total energy = 634.3127 kcal/mol (634.2097 without restraints) Performing minimization step: 455. Total energy = 633.4413 kcal/mol (633.3385 without restraints) Performing minimization step: 456. Total energy = 632.5722 kcal/mol (632.4698 without restraints) Performing minimization step: 457. Total energy = 631.7056 kcal/mol (631.6034 without restraints) Performing minimization step: 458. Total energy = 630.8413 kcal/mol (630.7394 without restraints) Performing minimization step: 459. Total energy = 629.9793 kcal/mol (629.8777 without restraints) Performing minimization step: 460. Total energy = 629.1197 kcal/mol (629.0184 without restraints) Performing minimization step: 461. Total energy = 628.2625 kcal/mol (628.1614 without restraints) Performing minimization step: 462. Total energy = 627.4075 kcal/mol (627.3067 without restraints) Performing minimization step: 463. Total energy = 626.5549 kcal/mol (626.4544 without restraints) Performing minimization step: 464. Total energy = 625.7045 kcal/mol (625.6043 without restraints) Performing minimization step: 465. Total energy = 624.8565 kcal/mol (624.7565 without restraints) Performing minimization step: 466. Total energy = 624.0107 kcal/mol (623.9110 without restraints) Performing minimization step: 467. Total energy = 623.1671 kcal/mol (623.0677 without restraints) Performing minimization step: 468. Total energy = 622.3258 kcal/mol (622.2267 without restraints) Performing minimization step: 469. Total energy = 621.4868 kcal/mol (621.3879 without restraints) Performing minimization step: 470. Total energy = 620.6500 kcal/mol (620.5513 without restraints) Performing minimization step: 471. Total energy = 619.8154 kcal/mol (619.7170 without restraints) Performing minimization step: 472. Total energy = 618.9829 kcal/mol (618.8848 without restraints) Performing minimization step: 473. Total energy = 618.1527 kcal/mol (618.0549 without restraints) Performing minimization step: 474. Total energy = 617.3247 kcal/mol (617.2271 without restraints) Performing minimization step: 475. Total energy = 616.4989 kcal/mol (616.4015 without restraints) Performing minimization step: 476. Total energy = 615.6752 kcal/mol (615.5781 without restraints) Performing minimization step: 477. Total energy = 614.8536 kcal/mol (614.7568 without restraints) Performing minimization step: 478. Total energy = 614.0342 kcal/mol (613.9377 without restraints) Performing minimization step: 479. Total energy = 613.2170 kcal/mol (613.1206 without restraints) Performing minimization step: 480. Total energy = 612.4019 kcal/mol (612.3058 without restraints) Performing minimization step: 481. Total energy = 611.5888 kcal/mol (611.4930 without restraints) Performing minimization step: 482. Total energy = 610.7779 kcal/mol (610.6823 without restraints) Performing minimization step: 483. Total energy = 609.9691 kcal/mol (609.8737 without restraints) Performing minimization step: 484. Total energy = 609.1623 kcal/mol (609.0672 without restraints) Performing minimization step: 485. Total energy = 608.3577 kcal/mol (608.2628 without restraints) Performing minimization step: 486. Total energy = 607.5551 kcal/mol (607.4604 without restraints) Performing minimization step: 487. Total energy = 606.7545 kcal/mol (606.6601 without restraints) Performing minimization step: 488. Total energy = 605.9560 kcal/mol (605.8619 without restraints) Performing minimization step: 489. Total energy = 605.1595 kcal/mol (605.0657 without restraints) Performing minimization step: 490. Total energy = 604.3651 kcal/mol (604.2715 without restraints) Performing minimization step: 491. Total energy = 603.5727 kcal/mol (603.4793 without restraints) Performing minimization step: 492. Total energy = 602.7823 kcal/mol (602.6891 without restraints) Performing minimization step: 493. Total energy = 601.9939 kcal/mol (601.9009 without restraints) Performing minimization step: 494. Total energy = 601.2074 kcal/mol (601.1147 without restraints) Performing minimization step: 495. Total energy = 600.4230 kcal/mol (600.3305 without restraints) Performing minimization step: 496. Total energy = 599.6405 kcal/mol (599.5483 without restraints) Performing minimization step: 497. Total energy = 598.8600 kcal/mol (598.7680 without restraints) Performing minimization step: 498. Total energy = 598.0815 kcal/mol (597.9897 without restraints) Performing minimization step: 499. Total energy = 597.3049 kcal/mol (597.2134 without restraints) Performing minimization step: 500. Total energy = 596.5302 kcal/mol (596.4389 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 501. Total energy = 595.7575 kcal/mol (595.6664 without restraints) Performing minimization step: 502. Total energy = 594.9867 kcal/mol (594.8959 without restraints) Performing minimization step: 503. Total energy = 594.2178 kcal/mol (594.1272 without restraints) Performing minimization step: 504. Total energy = 593.4509 kcal/mol (593.3604 without restraints) Performing minimization step: 505. Total energy = 592.6858 kcal/mol (592.5956 without restraints) Performing minimization step: 506. Total energy = 591.9226 kcal/mol (591.8326 without restraints) Performing minimization step: 507. Total energy = 591.1613 kcal/mol (591.0715 without restraints) Performing minimization step: 508. Total energy = 590.4018 kcal/mol (590.3123 without restraints) Performing minimization step: 509. Total energy = 589.6443 kcal/mol (589.5550 without restraints) Performing minimization step: 510. Total energy = 588.8886 kcal/mol (588.7995 without restraints) Performing minimization step: 511. Total energy = 588.1347 kcal/mol (588.0458 without restraints) Performing minimization step: 512. Total energy = 587.3827 kcal/mol (587.2940 without restraints) Performing minimization step: 513. Total energy = 586.6325 kcal/mol (586.5441 without restraints) Performing minimization step: 514. Total energy = 585.8841 kcal/mol (585.7959 without restraints) Performing minimization step: 515. Total energy = 585.1376 kcal/mol (585.0496 without restraints) Performing minimization step: 516. Total energy = 584.3929 kcal/mol (584.3051 without restraints) Performing minimization step: 517. Total energy = 583.6500 kcal/mol (583.5624 without restraints) Performing minimization step: 518. Total energy = 582.9088 kcal/mol (582.8215 without restraints) Performing minimization step: 519. Total energy = 582.1695 kcal/mol (582.0823 without restraints) Performing minimization step: 520. Total energy = 581.4320 kcal/mol (581.3450 without restraints) Performing minimization step: 521. Total energy = 580.6962 kcal/mol (580.6094 without restraints) Performing minimization step: 522. Total energy = 579.9622 kcal/mol (579.8756 without restraints) Performing minimization step: 523. Total energy = 579.2299 kcal/mol (579.1436 without restraints) Performing minimization step: 524. Total energy = 578.4994 kcal/mol (578.4133 without restraints) Performing minimization step: 525. Total energy = 577.7707 kcal/mol (577.6848 without restraints) Performing minimization step: 526. Total energy = 577.0437 kcal/mol (576.9580 without restraints) Performing minimization step: 527. Total energy = 576.3184 kcal/mol (576.2329 without restraints) Performing minimization step: 528. Total energy = 575.5949 kcal/mol (575.5096 without restraints) Performing minimization step: 529. Total energy = 574.8731 kcal/mol (574.7880 without restraints) Performing minimization step: 530. Total energy = 574.1530 kcal/mol (574.0681 without restraints) Performing minimization step: 531. Total energy = 573.4346 kcal/mol (573.3499 without restraints) Performing minimization step: 532. Total energy = 572.7179 kcal/mol (572.6334 without restraints) Performing minimization step: 533. Total energy = 572.0028 kcal/mol (571.9186 without restraints) Performing minimization step: 534. Total energy = 571.2895 kcal/mol (571.2054 without restraints) Performing minimization step: 535. Total energy = 570.5779 kcal/mol (570.4940 without restraints) Performing minimization step: 536. Total energy = 569.8679 kcal/mol (569.7842 without restraints) Performing minimization step: 537. Total energy = 569.1596 kcal/mol (569.0761 without restraints) Performing minimization step: 538. Total energy = 568.4530 kcal/mol (568.3697 without restraints) Performing minimization step: 539. Total energy = 567.7480 kcal/mol (567.6649 without restraints) Performing minimization step: 540. Total energy = 567.0446 kcal/mol (566.9617 without restraints) Performing minimization step: 541. Total energy = 566.3429 kcal/mol (566.2602 without restraints) Performing minimization step: 542. Total energy = 565.6429 kcal/mol (565.5604 without restraints) Performing minimization step: 543. Total energy = 564.9445 kcal/mol (564.8621 without restraints) Performing minimization step: 544. Total energy = 564.2476 kcal/mol (564.1655 without restraints) Performing minimization step: 545. Total energy = 563.5525 kcal/mol (563.4705 without restraints) Performing minimization step: 546. Total energy = 562.8589 kcal/mol (562.7771 without restraints) Performing minimization step: 547. Total energy = 562.1669 kcal/mol (562.0853 without restraints) Performing minimization step: 548. Total energy = 561.4765 kcal/mol (561.3951 without restraints) Performing minimization step: 549. Total energy = 560.7877 kcal/mol (560.7065 without restraints) Performing minimization step: 550. Total energy = 560.1005 kcal/mol (560.0195 without restraints) Performing minimization step: 551. Total energy = 559.4149 kcal/mol (559.3341 without restraints) Performing minimization step: 552. Total energy = 558.7309 kcal/mol (558.6502 without restraints) Performing minimization step: 553. Total energy = 558.0484 kcal/mol (557.9680 without restraints) Performing minimization step: 554. Total energy = 557.3675 kcal/mol (557.2872 without restraints) Performing minimization step: 555. Total energy = 556.6882 kcal/mol (556.6081 without restraints) Performing minimization step: 556. Total energy = 556.0104 kcal/mol (555.9305 without restraints) Performing minimization step: 557. Total energy = 555.3341 kcal/mol (555.2544 without restraints) Performing minimization step: 558. Total energy = 554.6594 kcal/mol (554.5799 without restraints) Performing minimization step: 559. Total energy = 553.9863 kcal/mol (553.9069 without restraints) Performing minimization step: 560. Total energy = 553.3146 kcal/mol (553.2354 without restraints) Performing minimization step: 561. Total energy = 552.6445 kcal/mol (552.5655 without restraints) Performing minimization step: 562. Total energy = 551.9759 kcal/mol (551.8971 without restraints) Performing minimization step: 563. Total energy = 551.3089 kcal/mol (551.2302 without restraints) Performing minimization step: 564. Total energy = 550.6433 kcal/mol (550.5648 without restraints) Performing minimization step: 565. Total energy = 549.9792 kcal/mol (549.9009 without restraints) Performing minimization step: 566. Total energy = 549.3167 kcal/mol (549.2385 without restraints) Performing minimization step: 567. Total energy = 548.6556 kcal/mol (548.5776 without restraints) Performing minimization step: 568. Total energy = 547.9960 kcal/mol (547.9182 without restraints) Performing minimization step: 569. Total energy = 547.3379 kcal/mol (547.2603 without restraints) Performing minimization step: 570. Total energy = 546.6813 kcal/mol (546.6039 without restraints) Performing minimization step: 571. Total energy = 546.0261 kcal/mol (545.9489 without restraints) Performing minimization step: 572. Total energy = 545.3724 kcal/mol (545.2954 without restraints) Performing minimization step: 573. Total energy = 544.7202 kcal/mol (544.6433 without restraints) Performing minimization step: 574. Total energy = 544.0695 kcal/mol (543.9927 without restraints) Performing minimization step: 575. Total energy = 543.4201 kcal/mol (543.3436 without restraints) Performing minimization step: 576. Total energy = 542.7723 kcal/mol (542.6959 without restraints) Performing minimization step: 577. Total energy = 542.1259 kcal/mol (542.0496 without restraints) Performing minimization step: 578. Total energy = 541.4809 kcal/mol (541.4048 without restraints) Performing minimization step: 579. Total energy = 540.8373 kcal/mol (540.7614 without restraints) Performing minimization step: 580. Total energy = 540.1952 kcal/mol (540.1195 without restraints) Performing minimization step: 581. Total energy = 539.5545 kcal/mol (539.4790 without restraints) Performing minimization step: 582. Total energy = 538.9152 kcal/mol (538.8398 without restraints) Performing minimization step: 583. Total energy = 538.2773 kcal/mol (538.2021 without restraints) Performing minimization step: 584. Total energy = 537.6409 kcal/mol (537.5658 without restraints) Performing minimization step: 585. Total energy = 537.0058 kcal/mol (536.9309 without restraints) Performing minimization step: 586. Total energy = 536.3722 kcal/mol (536.2975 without restraints) Performing minimization step: 587. Total energy = 535.7399 kcal/mol (535.6654 without restraints) Performing minimization step: 588. Total energy = 535.1090 kcal/mol (535.0346 without restraints) Performing minimization step: 589. Total energy = 534.4795 kcal/mol (534.4053 without restraints) Performing minimization step: 590. Total energy = 533.8514 kcal/mol (533.7774 without restraints) Performing minimization step: 591. Total energy = 533.2247 kcal/mol (533.1508 without restraints) Performing minimization step: 592. Total energy = 532.5993 kcal/mol (532.5256 without restraints) Performing minimization step: 593. Total energy = 531.9753 kcal/mol (531.9018 without restraints) Performing minimization step: 594. Total energy = 531.3527 kcal/mol (531.2793 without restraints) Performing minimization step: 595. Total energy = 530.7314 kcal/mol (530.6582 without restraints) Performing minimization step: 596. Total energy = 530.1115 kcal/mol (530.0384 without restraints) Performing minimization step: 597. Total energy = 529.4929 kcal/mol (529.4200 without restraints) Performing minimization step: 598. Total energy = 528.8757 kcal/mol (528.8029 without restraints) Performing minimization step: 599. Total energy = 528.2598 kcal/mol (528.1872 without restraints) Performing minimization step: 600. Total energy = 527.6453 kcal/mol (527.5728 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 601. Total energy = 527.0321 kcal/mol (526.9598 without restraints) Performing minimization step: 602. Total energy = 526.4202 kcal/mol (526.3480 without restraints) Performing minimization step: 603. Total energy = 525.8096 kcal/mol (525.7376 without restraints) Performing minimization step: 604. Total energy = 525.2004 kcal/mol (525.1285 without restraints) Performing minimization step: 605. Total energy = 524.5924 kcal/mol (524.5208 without restraints) Performing minimization step: 606. Total energy = 523.9858 kcal/mol (523.9143 without restraints) Performing minimization step: 607. Total energy = 523.3805 kcal/mol (523.3091 without restraints) Performing minimization step: 608. Total energy = 522.7765 kcal/mol (522.7053 without restraints) Performing minimization step: 609. Total energy = 522.1738 kcal/mol (522.1027 without restraints) Performing minimization step: 610. Total energy = 521.5724 kcal/mol (521.5015 without restraints) Performing minimization step: 611. Total energy = 520.9722 kcal/mol (520.9015 without restraints) Performing minimization step: 612. Total energy = 520.3734 kcal/mol (520.3028 without restraints) Performing minimization step: 613. Total energy = 519.7758 kcal/mol (519.7054 without restraints) Performing minimization step: 614. Total energy = 519.1796 kcal/mol (519.1093 without restraints) Performing minimization step: 615. Total energy = 518.5846 kcal/mol (518.5144 without restraints) Performing minimization step: 616. Total energy = 517.9908 kcal/mol (517.9208 without restraints) Performing minimization step: 617. Total energy = 517.3984 kcal/mol (517.3285 without restraints) Performing minimization step: 618. Total energy = 516.8071 kcal/mol (516.7374 without restraints) Performing minimization step: 619. Total energy = 516.2172 kcal/mol (516.1476 without restraints) Performing minimization step: 620. Total energy = 515.6285 kcal/mol (515.5591 without restraints) Performing minimization step: 621. Total energy = 515.0411 kcal/mol (514.9718 without restraints) Performing minimization step: 622. Total energy = 514.4549 kcal/mol (514.3857 without restraints) Performing minimization step: 623. Total energy = 513.8699 kcal/mol (513.8009 without restraints) Performing minimization step: 624. Total energy = 513.2862 kcal/mol (513.2174 without restraints) Performing minimization step: 625. Total energy = 512.7037 kcal/mol (512.6350 without restraints) Performing minimization step: 626. Total energy = 512.1225 kcal/mol (512.0539 without restraints) Performing minimization step: 627. Total energy = 511.5424 kcal/mol (511.4741 without restraints) Performing minimization step: 628. Total energy = 510.9637 kcal/mol (510.8954 without restraints) Performing minimization step: 629. Total energy = 510.3861 kcal/mol (510.3180 without restraints) Performing minimization step: 630. Total energy = 509.8097 kcal/mol (509.7418 without restraints) Performing minimization step: 631. Total energy = 509.2346 kcal/mol (509.1668 without restraints) Performing minimization step: 632. Total energy = 508.6606 kcal/mol (508.5930 without restraints) Performing minimization step: 633. Total energy = 508.0879 kcal/mol (508.0204 without restraints) Performing minimization step: 634. Total energy = 507.5164 kcal/mol (507.4490 without restraints) Performing minimization step: 635. Total energy = 506.9460 kcal/mol (506.8788 without restraints) Performing minimization step: 636. Total energy = 506.3769 kcal/mol (506.3098 without restraints) Performing minimization step: 637. Total energy = 505.8090 kcal/mol (505.7420 without restraints) Performing minimization step: 638. Total energy = 505.2422 kcal/mol (505.1754 without restraints) Performing minimization step: 639. Total energy = 504.6766 kcal/mol (504.6100 without restraints) Performing minimization step: 640. Total energy = 504.1123 kcal/mol (504.0457 without restraints) Performing minimization step: 641. Total energy = 503.5490 kcal/mol (503.4826 without restraints) Performing minimization step: 642. Total energy = 502.9870 kcal/mol (502.9207 without restraints) Performing minimization step: 643. Total energy = 502.4261 kcal/mol (502.3600 without restraints) Performing minimization step: 644. Total energy = 501.8664 kcal/mol (501.8004 without restraints) Performing minimization step: 645. Total energy = 501.3079 kcal/mol (501.2420 without restraints) Performing minimization step: 646. Total energy = 500.7505 kcal/mol (500.6848 without restraints) Performing minimization step: 647. Total energy = 500.1943 kcal/mol (500.1287 without restraints) Performing minimization step: 648. Total energy = 499.6392 kcal/mol (499.5738 without restraints) Performing minimization step: 649. Total energy = 499.0853 kcal/mol (499.0200 without restraints) Performing minimization step: 650. Total energy = 498.5325 kcal/mol (498.4674 without restraints) Performing minimization step: 651. Total energy = 497.9809 kcal/mol (497.9159 without restraints) Performing minimization step: 652. Total energy = 497.4304 kcal/mol (497.3655 without restraints) Performing minimization step: 653. Total energy = 496.8811 kcal/mol (496.8163 without restraints) Performing minimization step: 654. Total energy = 496.3328 kcal/mol (496.2682 without restraints) Performing minimization step: 655. Total energy = 495.7857 kcal/mol (495.7212 without restraints) Performing minimization step: 656. Total energy = 495.2398 kcal/mol (495.1754 without restraints) Performing minimization step: 657. Total energy = 494.6949 kcal/mol (494.6307 without restraints) Performing minimization step: 658. Total energy = 494.1512 kcal/mol (494.0871 without restraints) Performing minimization step: 659. Total energy = 493.6086 kcal/mol (493.5446 without restraints) Performing minimization step: 660. Total energy = 493.0671 kcal/mol (493.0033 without restraints) Performing minimization step: 661. Total energy = 492.5267 kcal/mol (492.4630 without restraints) Performing minimization step: 662. Total energy = 491.9875 kcal/mol (491.9239 without restraints) Performing minimization step: 663. Total energy = 491.4493 kcal/mol (491.3858 without restraints) Performing minimization step: 664. Total energy = 490.9122 kcal/mol (490.8489 without restraints) Performing minimization step: 665. Total energy = 490.3762 kcal/mol (490.3130 without restraints) Performing minimization step: 666. Total energy = 489.8414 kcal/mol (489.7783 without restraints) Performing minimization step: 667. Total energy = 489.3076 kcal/mol (489.2446 without restraints) Performing minimization step: 668. Total energy = 488.7749 kcal/mol (488.7121 without restraints) Performing minimization step: 669. Total energy = 488.2433 kcal/mol (488.1806 without restraints) Performing minimization step: 670. Total energy = 487.7127 kcal/mol (487.6502 without restraints) Performing minimization step: 671. Total energy = 487.1833 kcal/mol (487.1208 without restraints) Performing minimization step: 672. Total energy = 486.6549 kcal/mol (486.5926 without restraints) Performing minimization step: 673. Total energy = 486.1276 kcal/mol (486.0654 without restraints) Performing minimization step: 674. Total energy = 485.6014 kcal/mol (485.5393 without restraints) Performing minimization step: 675. Total energy = 485.0762 kcal/mol (485.0143 without restraints) Performing minimization step: 676. Total energy = 484.5521 kcal/mol (484.4903 without restraints) Performing minimization step: 677. Total energy = 484.0290 kcal/mol (483.9674 without restraints) Performing minimization step: 678. Total energy = 483.5071 kcal/mol (483.4455 without restraints) Performing minimization step: 679. Total energy = 482.9861 kcal/mol (482.9247 without restraints) Performing minimization step: 680. Total energy = 482.4662 kcal/mol (482.4049 without restraints) Performing minimization step: 681. Total energy = 481.9474 kcal/mol (481.8862 without restraints) Performing minimization step: 682. Total energy = 481.4296 kcal/mol (481.3686 without restraints) Performing minimization step: 683. Total energy = 480.9129 kcal/mol (480.8519 without restraints) Performing minimization step: 684. Total energy = 480.3972 kcal/mol (480.3364 without restraints) Performing minimization step: 685. Total energy = 479.8825 kcal/mol (479.8218 without restraints) Performing minimization step: 686. Total energy = 479.3689 kcal/mol (479.3083 without restraints) Performing minimization step: 687. Total energy = 478.8563 kcal/mol (478.7958 without restraints) Performing minimization step: 688. Total energy = 478.3447 kcal/mol (478.2844 without restraints) Performing minimization step: 689. Total energy = 477.8342 kcal/mol (477.7740 without restraints) Performing minimization step: 690. Total energy = 477.3246 kcal/mol (477.2645 without restraints) Performing minimization step: 691. Total energy = 476.8161 kcal/mol (476.7562 without restraints) Performing minimization step: 692. Total energy = 476.3086 kcal/mol (476.2488 without restraints) Performing minimization step: 693. Total energy = 475.8022 kcal/mol (475.7424 without restraints) Performing minimization step: 694. Total energy = 475.2967 kcal/mol (475.2371 without restraints) Performing minimization step: 695. Total energy = 474.7922 kcal/mol (474.7328 without restraints) Performing minimization step: 696. Total energy = 474.2888 kcal/mol (474.2294 without restraints) Performing minimization step: 697. Total energy = 473.7863 kcal/mol (473.7271 without restraints) Performing minimization step: 698. Total energy = 473.2849 kcal/mol (473.2258 without restraints) Performing minimization step: 699. Total energy = 472.7844 kcal/mol (472.7254 without restraints) Performing minimization step: 700. Total energy = 472.2850 kcal/mol (472.2261 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 701. Total energy = 471.7865 kcal/mol (471.7277 without restraints) Performing minimization step: 702. Total energy = 471.2891 kcal/mol (471.2304 without restraints) Performing minimization step: 703. Total energy = 470.7926 kcal/mol (470.7340 without restraints) Performing minimization step: 704. Total energy = 470.2971 kcal/mol (470.2386 without restraints) Performing minimization step: 705. Total energy = 469.8025 kcal/mol (469.7442 without restraints) Performing minimization step: 706. Total energy = 469.3090 kcal/mol (469.2508 without restraints) Performing minimization step: 707. Total energy = 468.8164 kcal/mol (468.7583 without restraints) Performing minimization step: 708. Total energy = 468.3248 kcal/mol (468.2668 without restraints) Performing minimization step: 709. Total energy = 467.8342 kcal/mol (467.7763 without restraints) Performing minimization step: 710. Total energy = 467.3445 kcal/mol (467.2868 without restraints) Performing minimization step: 711. Total energy = 466.8558 kcal/mol (466.7982 without restraints) Performing minimization step: 712. Total energy = 466.3681 kcal/mol (466.3106 without restraints) Performing minimization step: 713. Total energy = 465.8813 kcal/mol (465.8239 without restraints) Performing minimization step: 714. Total energy = 465.3955 kcal/mol (465.3382 without restraints) Performing minimization step: 715. Total energy = 464.9106 kcal/mol (464.8535 without restraints) Performing minimization step: 716. Total energy = 464.4267 kcal/mol (464.3697 without restraints) Performing minimization step: 717. Total energy = 463.9438 kcal/mol (463.8868 without restraints) Performing minimization step: 718. Total energy = 463.4617 kcal/mol (463.4049 without restraints) Performing minimization step: 719. Total energy = 462.9807 kcal/mol (462.9239 without restraints) Performing minimization step: 720. Total energy = 462.5005 kcal/mol (462.4439 without restraints) Performing minimization step: 721. Total energy = 462.0213 kcal/mol (461.9648 without restraints) Performing minimization step: 722. Total energy = 461.5431 kcal/mol (461.4867 without restraints) Performing minimization step: 723. Total energy = 461.0658 kcal/mol (461.0095 without restraints) Performing minimization step: 724. Total energy = 460.5894 kcal/mol (460.5332 without restraints) Performing minimization step: 725. Total energy = 460.1139 kcal/mol (460.0578 without restraints) Performing minimization step: 726. Total energy = 459.6394 kcal/mol (459.5834 without restraints) Performing minimization step: 727. Total energy = 459.1657 kcal/mol (459.1099 without restraints) Performing minimization step: 728. Total energy = 458.6930 kcal/mol (458.6373 without restraints) Performing minimization step: 729. Total energy = 458.2213 kcal/mol (458.1656 without restraints) Performing minimization step: 730. Total energy = 457.7504 kcal/mol (457.6949 without restraints) Performing minimization step: 731. Total energy = 457.2804 kcal/mol (457.2250 without restraints) Performing minimization step: 732. Total energy = 456.8114 kcal/mol (456.7561 without restraints) Performing minimization step: 733. Total energy = 456.3433 kcal/mol (456.2881 without restraints) Performing minimization step: 734. Total energy = 455.8761 kcal/mol (455.8210 without restraints) Performing minimization step: 735. Total energy = 455.4097 kcal/mol (455.3547 without restraints) Performing minimization step: 736. Total energy = 454.9443 kcal/mol (454.8894 without restraints) Performing minimization step: 737. Total energy = 454.4798 kcal/mol (454.4250 without restraints) Performing minimization step: 738. Total energy = 454.0162 kcal/mol (453.9615 without restraints) Performing minimization step: 739. Total energy = 453.5534 kcal/mol (453.4989 without restraints) Performing minimization step: 740. Total energy = 453.0916 kcal/mol (453.0371 without restraints) Performing minimization step: 741. Total energy = 452.6306 kcal/mol (452.5763 without restraints) Performing minimization step: 742. Total energy = 452.1706 kcal/mol (452.1163 without restraints) Performing minimization step: 743. Total energy = 451.7114 kcal/mol (451.6572 without restraints) Performing minimization step: 744. Total energy = 451.2531 kcal/mol (451.1990 without restraints) Performing minimization step: 745. Total energy = 450.7957 kcal/mol (450.7417 without restraints) Performing minimization step: 746. Total energy = 450.3391 kcal/mol (450.2853 without restraints) Performing minimization step: 747. Total energy = 449.8835 kcal/mol (449.8297 without restraints) Performing minimization step: 748. Total energy = 449.4287 kcal/mol (449.3750 without restraints) Performing minimization step: 749. Total energy = 448.9747 kcal/mol (448.9212 without restraints) Performing minimization step: 750. Total energy = 448.5217 kcal/mol (448.4682 without restraints) Performing minimization step: 751. Total energy = 448.0695 kcal/mol (448.0161 without restraints) Performing minimization step: 752. Total energy = 447.6181 kcal/mol (447.5649 without restraints) Performing minimization step: 753. Total energy = 447.1677 kcal/mol (447.1145 without restraints) Performing minimization step: 754. Total energy = 446.7180 kcal/mol (446.6650 without restraints) Performing minimization step: 755. Total energy = 446.2693 kcal/mol (446.2164 without restraints) Performing minimization step: 756. Total energy = 445.8214 kcal/mol (445.7685 without restraints) Performing minimization step: 757. Total energy = 445.3743 kcal/mol (445.3216 without restraints) Performing minimization step: 758. Total energy = 444.9281 kcal/mol (444.8755 without restraints) Performing minimization step: 759. Total energy = 444.4827 kcal/mol (444.4302 without restraints) Performing minimization step: 760. Total energy = 444.0382 kcal/mol (443.9858 without restraints) Performing minimization step: 761. Total energy = 443.5945 kcal/mol (443.5422 without restraints) Performing minimization step: 762. Total energy = 443.1517 kcal/mol (443.0995 without restraints) Performing minimization step: 763. Total energy = 442.7097 kcal/mol (442.6576 without restraints) Performing minimization step: 764. Total energy = 442.2685 kcal/mol (442.2165 without restraints) Performing minimization step: 765. Total energy = 441.8282 kcal/mol (441.7763 without restraints) Performing minimization step: 766. Total energy = 441.3887 kcal/mol (441.3369 without restraints) Performing minimization step: 767. Total energy = 440.9500 kcal/mol (440.8983 without restraints) Performing minimization step: 768. Total energy = 440.5122 kcal/mol (440.4605 without restraints) Performing minimization step: 769. Total energy = 440.0752 kcal/mol (440.0236 without restraints) Performing minimization step: 770. Total energy = 439.6389 kcal/mol (439.5875 without restraints) Performing minimization step: 771. Total energy = 439.2036 kcal/mol (439.1522 without restraints) Performing minimization step: 772. Total energy = 438.7690 kcal/mol (438.7178 without restraints) Performing minimization step: 773. Total energy = 438.3352 kcal/mol (438.2841 without restraints) Performing minimization step: 774. Total energy = 437.9023 kcal/mol (437.8512 without restraints) Performing minimization step: 775. Total energy = 437.4702 kcal/mol (437.4192 without restraints) Performing minimization step: 776. Total energy = 437.0389 kcal/mol (436.9880 without restraints) Performing minimization step: 777. Total energy = 436.6083 kcal/mol (436.5576 without restraints) Performing minimization step: 778. Total energy = 436.1786 kcal/mol (436.1279 without restraints) Performing minimization step: 779. Total energy = 435.7497 kcal/mol (435.6991 without restraints) Performing minimization step: 780. Total energy = 435.3216 kcal/mol (435.2711 without restraints) Performing minimization step: 781. Total energy = 434.8943 kcal/mol (434.8439 without restraints) Performing minimization step: 782. Total energy = 434.4678 kcal/mol (434.4175 without restraints) Performing minimization step: 783. Total energy = 434.0420 kcal/mol (433.9918 without restraints) Performing minimization step: 784. Total energy = 433.6171 kcal/mol (433.5670 without restraints) Performing minimization step: 785. Total energy = 433.1930 kcal/mol (433.1429 without restraints) Performing minimization step: 786. Total energy = 432.7696 kcal/mol (432.7197 without restraints) Performing minimization step: 787. Total energy = 432.3470 kcal/mol (432.2972 without restraints) Performing minimization step: 788. Total energy = 431.9252 kcal/mol (431.8755 without restraints) Performing minimization step: 789. Total energy = 431.5042 kcal/mol (431.4546 without restraints) Performing minimization step: 790. Total energy = 431.0840 kcal/mol (431.0344 without restraints) Performing minimization step: 791. Total energy = 430.6645 kcal/mol (430.6151 without restraints) Performing minimization step: 792. Total energy = 430.2458 kcal/mol (430.1965 without restraints) Performing minimization step: 793. Total energy = 429.8279 kcal/mol (429.7786 without restraints) Performing minimization step: 794. Total energy = 429.4108 kcal/mol (429.3616 without restraints) Performing minimization step: 795. Total energy = 428.9944 kcal/mol (428.9453 without restraints) Performing minimization step: 796. Total energy = 428.5788 kcal/mol (428.5298 without restraints) Performing minimization step: 797. Total energy = 428.1639 kcal/mol (428.1150 without restraints) Performing minimization step: 798. Total energy = 427.7498 kcal/mol (427.7010 without restraints) Performing minimization step: 799. Total energy = 427.3365 kcal/mol (427.2878 without restraints) Performing minimization step: 800. Total energy = 426.9239 kcal/mol (426.8753 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 801. Total energy = 426.5121 kcal/mol (426.4636 without restraints) Performing minimization step: 802. Total energy = 426.1011 kcal/mol (426.0526 without restraints) Performing minimization step: 803. Total energy = 425.6907 kcal/mol (425.6424 without restraints) Performing minimization step: 804. Total energy = 425.2812 kcal/mol (425.2329 without restraints) Performing minimization step: 805. Total energy = 424.8724 kcal/mol (424.8242 without restraints) Performing minimization step: 806. Total energy = 424.4643 kcal/mol (424.4162 without restraints) Performing minimization step: 807. Total energy = 424.0570 kcal/mol (424.0089 without restraints) Performing minimization step: 808. Total energy = 423.6504 kcal/mol (423.6024 without restraints) Performing minimization step: 809. Total energy = 423.2445 kcal/mol (423.1967 without restraints) Performing minimization step: 810. Total energy = 422.8394 kcal/mol (422.7916 without restraints) Performing minimization step: 811. Total energy = 422.4350 kcal/mol (422.3873 without restraints) Performing minimization step: 812. Total energy = 422.0314 kcal/mol (421.9838 without restraints) Performing minimization step: 813. Total energy = 421.6285 kcal/mol (421.5809 without restraints) Performing minimization step: 814. Total energy = 421.2263 kcal/mol (421.1788 without restraints) Performing minimization step: 815. Total energy = 420.8248 kcal/mol (420.7775 without restraints) Performing minimization step: 816. Total energy = 420.4241 kcal/mol (420.3768 without restraints) Performing minimization step: 817. Total energy = 420.0241 kcal/mol (419.9769 without restraints) Performing minimization step: 818. Total energy = 419.6248 kcal/mol (419.5777 without restraints) Performing minimization step: 819. Total energy = 419.2262 kcal/mol (419.1792 without restraints) Performing minimization step: 820. Total energy = 418.8283 kcal/mol (418.7814 without restraints) Performing minimization step: 821. Total energy = 418.4312 kcal/mol (418.3844 without restraints) Performing minimization step: 822. Total energy = 418.0348 kcal/mol (417.9880 without restraints) Performing minimization step: 823. Total energy = 417.6390 kcal/mol (417.5924 without restraints) Performing minimization step: 824. Total energy = 417.2440 kcal/mol (417.1974 without restraints) Performing minimization step: 825. Total energy = 416.8497 kcal/mol (416.8032 without restraints) Performing minimization step: 826. Total energy = 416.4561 kcal/mol (416.4097 without restraints) Performing minimization step: 827. Total energy = 416.0632 kcal/mol (416.0169 without restraints) Performing minimization step: 828. Total energy = 415.6710 kcal/mol (415.6248 without restraints) Performing minimization step: 829. Total energy = 415.2795 kcal/mol (415.2334 without restraints) Performing minimization step: 830. Total energy = 414.8887 kcal/mol (414.8427 without restraints) Performing minimization step: 831. Total energy = 414.4986 kcal/mol (414.4526 without restraints) Performing minimization step: 832. Total energy = 414.1092 kcal/mol (414.0633 without restraints) Performing minimization step: 833. Total energy = 413.7205 kcal/mol (413.6747 without restraints) Performing minimization step: 834. Total energy = 413.3325 kcal/mol (413.2867 without restraints) Performing minimization step: 835. Total energy = 412.9451 kcal/mol (412.8995 without restraints) Performing minimization step: 836. Total energy = 412.5585 kcal/mol (412.5129 without restraints) Performing minimization step: 837. Total energy = 412.1725 kcal/mol (412.1270 without restraints) Performing minimization step: 838. Total energy = 411.7872 kcal/mol (411.7418 without restraints) Performing minimization step: 839. Total energy = 411.4026 kcal/mol (411.3573 without restraints) Performing minimization step: 840. Total energy = 411.0187 kcal/mol (410.9734 without restraints) Performing minimization step: 841. Total energy = 410.6354 kcal/mol (410.5902 without restraints) Performing minimization step: 842. Total energy = 410.2529 kcal/mol (410.2077 without restraints) Performing minimization step: 843. Total energy = 409.8710 kcal/mol (409.8259 without restraints) Performing minimization step: 844. Total energy = 409.4897 kcal/mol (409.4448 without restraints) Performing minimization step: 845. Total energy = 409.1092 kcal/mol (409.0643 without restraints) Performing minimization step: 846. Total energy = 408.7293 kcal/mol (408.6845 without restraints) Performing minimization step: 847. Total energy = 408.3500 kcal/mol (408.3053 without restraints) Performing minimization step: 848. Total energy = 407.9714 kcal/mol (407.9268 without restraints) Performing minimization step: 849. Total energy = 407.5935 kcal/mol (407.5489 without restraints) Performing minimization step: 850. Total energy = 407.2163 kcal/mol (407.1718 without restraints) Performing minimization step: 851. Total energy = 406.8397 kcal/mol (406.7953 without restraints) Performing minimization step: 852. Total energy = 406.4637 kcal/mol (406.4194 without restraints) Performing minimization step: 853. Total energy = 406.0885 kcal/mol (406.0442 without restraints) Performing minimization step: 854. Total energy = 405.7138 kcal/mol (405.6696 without restraints) Performing minimization step: 855. Total energy = 405.3398 kcal/mol (405.2957 without restraints) Performing minimization step: 856. Total energy = 404.9665 kcal/mol (404.9225 without restraints) Performing minimization step: 857. Total energy = 404.5938 kcal/mol (404.5499 without restraints) Performing minimization step: 858. Total energy = 404.2218 kcal/mol (404.1779 without restraints) Performing minimization step: 859. Total energy = 403.8504 kcal/mol (403.8066 without restraints) Performing minimization step: 860. Total energy = 403.4797 kcal/mol (403.4359 without restraints) Performing minimization step: 861. Total energy = 403.1095 kcal/mol (403.0659 without restraints) Performing minimization step: 862. Total energy = 402.7401 kcal/mol (402.6965 without restraints) Performing minimization step: 863. Total energy = 402.3712 kcal/mol (402.3277 without restraints) Performing minimization step: 864. Total energy = 402.0030 kcal/mol (401.9596 without restraints) Performing minimization step: 865. Total energy = 401.6355 kcal/mol (401.5921 without restraints) Performing minimization step: 866. Total energy = 401.2685 kcal/mol (401.2253 without restraints) Performing minimization step: 867. Total energy = 400.9022 kcal/mol (400.8590 without restraints) Performing minimization step: 868. Total energy = 400.5365 kcal/mol (400.4934 without restraints) Performing minimization step: 869. Total energy = 400.1715 kcal/mol (400.1284 without restraints) Performing minimization step: 870. Total energy = 399.8071 kcal/mol (399.7641 without restraints) Performing minimization step: 871. Total energy = 399.4432 kcal/mol (399.4003 without restraints) Performing minimization step: 872. Total energy = 399.0801 kcal/mol (399.0372 without restraints) Performing minimization step: 873. Total energy = 398.7175 kcal/mol (398.6747 without restraints) Performing minimization step: 874. Total energy = 398.3555 kcal/mol (398.3129 without restraints) Performing minimization step: 875. Total energy = 397.9942 kcal/mol (397.9516 without restraints) Performing minimization step: 876. Total energy = 397.6335 kcal/mol (397.5909 without restraints) Performing minimization step: 877. Total energy = 397.2734 kcal/mol (397.2309 without restraints) Performing minimization step: 878. Total energy = 396.9139 kcal/mol (396.8715 without restraints) Performing minimization step: 879. Total energy = 396.5550 kcal/mol (396.5126 without restraints) Performing minimization step: 880. Total energy = 396.1967 kcal/mol (396.1544 without restraints) Performing minimization step: 881. Total energy = 395.8390 kcal/mol (395.7968 without restraints) Performing minimization step: 882. Total energy = 395.4819 kcal/mol (395.4398 without restraints) Performing minimization step: 883. Total energy = 395.1255 kcal/mol (395.0834 without restraints) Performing minimization step: 884. Total energy = 394.7696 kcal/mol (394.7276 without restraints) Performing minimization step: 885. Total energy = 394.4143 kcal/mol (394.3724 without restraints) Performing minimization step: 886. Total energy = 394.0596 kcal/mol (394.0178 without restraints) Performing minimization step: 887. Total energy = 393.7055 kcal/mol (393.6638 without restraints) Performing minimization step: 888. Total energy = 393.3520 kcal/mol (393.3104 without restraints) Performing minimization step: 889. Total energy = 392.9991 kcal/mol (392.9575 without restraints) Performing minimization step: 890. Total energy = 392.6468 kcal/mol (392.6053 without restraints) Performing minimization step: 891. Total energy = 392.2951 kcal/mol (392.2536 without restraints) Performing minimization step: 892. Total energy = 391.9440 kcal/mol (391.9026 without restraints) Performing minimization step: 893. Total energy = 391.5934 kcal/mol (391.5521 without restraints) Performing minimization step: 894. Total energy = 391.2435 kcal/mol (391.2022 without restraints) Performing minimization step: 895. Total energy = 390.8941 kcal/mol (390.8529 without restraints) Performing minimization step: 896. Total energy = 390.5453 kcal/mol (390.5041 without restraints) Performing minimization step: 897. Total energy = 390.1970 kcal/mol (390.1560 without restraints) Performing minimization step: 898. Total energy = 389.8494 kcal/mol (389.8084 without restraints) Performing minimization step: 899. Total energy = 389.5023 kcal/mol (389.4614 without restraints) Performing minimization step: 900. Total energy = 389.1558 kcal/mol (389.1149 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 901. Total energy = 388.8099 kcal/mol (388.7691 without restraints) Performing minimization step: 902. Total energy = 388.4645 kcal/mol (388.4238 without restraints) Performing minimization step: 903. Total energy = 388.1197 kcal/mol (388.0791 without restraints) Performing minimization step: 904. Total energy = 387.7755 kcal/mol (387.7349 without restraints) Performing minimization step: 905. Total energy = 387.4318 kcal/mol (387.3913 without restraints) Performing minimization step: 906. Total energy = 387.0888 kcal/mol (387.0483 without restraints) Performing minimization step: 907. Total energy = 386.7462 kcal/mol (386.7058 without restraints) Performing minimization step: 908. Total energy = 386.4042 kcal/mol (386.3639 without restraints) Performing minimization step: 909. Total energy = 386.0628 kcal/mol (386.0226 without restraints) Performing minimization step: 910. Total energy = 385.7220 kcal/mol (385.6818 without restraints) Performing minimization step: 911. Total energy = 385.3817 kcal/mol (385.3416 without restraints) Performing minimization step: 912. Total energy = 385.0419 kcal/mol (385.0019 without restraints) Performing minimization step: 913. Total energy = 384.7027 kcal/mol (384.6627 without restraints) Performing minimization step: 914. Total energy = 384.3641 kcal/mol (384.3242 without restraints) Performing minimization step: 915. Total energy = 384.0260 kcal/mol (383.9861 without restraints) Performing minimization step: 916. Total energy = 383.6885 kcal/mol (383.6487 without restraints) Performing minimization step: 917. Total energy = 383.3515 kcal/mol (383.3117 without restraints) Performing minimization step: 918. Total energy = 383.0150 kcal/mol (382.9753 without restraints) Performing minimization step: 919. Total energy = 382.6791 kcal/mol (382.6395 without restraints) Performing minimization step: 920. Total energy = 382.3438 kcal/mol (382.3042 without restraints) Performing minimization step: 921. Total energy = 382.0089 kcal/mol (381.9694 without restraints) Performing minimization step: 922. Total energy = 381.6746 kcal/mol (381.6352 without restraints) Performing minimization step: 923. Total energy = 381.3409 kcal/mol (381.3015 without restraints) Performing minimization step: 924. Total energy = 381.0077 kcal/mol (380.9684 without restraints) Performing minimization step: 925. Total energy = 380.6750 kcal/mol (380.6358 without restraints) Performing minimization step: 926. Total energy = 380.3429 kcal/mol (380.3037 without restraints) Performing minimization step: 927. Total energy = 380.0112 kcal/mol (379.9721 without restraints) Performing minimization step: 928. Total energy = 379.6802 kcal/mol (379.6411 without restraints) Performing minimization step: 929. Total energy = 379.3496 kcal/mol (379.3106 without restraints) Performing minimization step: 930. Total energy = 379.0196 kcal/mol (378.9806 without restraints) Performing minimization step: 931. Total energy = 378.6901 kcal/mol (378.6512 without restraints) Performing minimization step: 932. Total energy = 378.3611 kcal/mol (378.3223 without restraints) Performing minimization step: 933. Total energy = 378.0326 kcal/mol (377.9939 without restraints) Performing minimization step: 934. Total energy = 377.7047 kcal/mol (377.6660 without restraints) Performing minimization step: 935. Total energy = 377.3773 kcal/mol (377.3386 without restraints) Performing minimization step: 936. Total energy = 377.0504 kcal/mol (377.0118 without restraints) Performing minimization step: 937. Total energy = 376.7240 kcal/mol (376.6855 without restraints) Performing minimization step: 938. Total energy = 376.3981 kcal/mol (376.3597 without restraints) Performing minimization step: 939. Total energy = 376.0727 kcal/mol (376.0344 without restraints) Performing minimization step: 940. Total energy = 375.7479 kcal/mol (375.7096 without restraints) Performing minimization step: 941. Total energy = 375.4236 kcal/mol (375.3853 without restraints) Performing minimization step: 942. Total energy = 375.0997 kcal/mol (375.0615 without restraints) Performing minimization step: 943. Total energy = 374.7764 kcal/mol (374.7383 without restraints) Performing minimization step: 944. Total energy = 374.4536 kcal/mol (374.4155 without restraints) Performing minimization step: 945. Total energy = 374.1313 kcal/mol (374.0933 without restraints) Performing minimization step: 946. Total energy = 373.8095 kcal/mol (373.7715 without restraints) Performing minimization step: 947. Total energy = 373.4882 kcal/mol (373.4503 without restraints) Performing minimization step: 948. Total energy = 373.1674 kcal/mol (373.1296 without restraints) Performing minimization step: 949. Total energy = 372.8471 kcal/mol (372.8093 without restraints) Performing minimization step: 950. Total energy = 372.5273 kcal/mol (372.4896 without restraints) Performing minimization step: 951. Total energy = 372.2080 kcal/mol (372.1703 without restraints) Performing minimization step: 952. Total energy = 371.8892 kcal/mol (371.8516 without restraints) Performing minimization step: 953. Total energy = 371.5708 kcal/mol (371.5333 without restraints) Performing minimization step: 954. Total energy = 371.2530 kcal/mol (371.2155 without restraints) Performing minimization step: 955. Total energy = 370.9357 kcal/mol (370.8982 without restraints) Performing minimization step: 956. Total energy = 370.6188 kcal/mol (370.5814 without restraints) Performing minimization step: 957. Total energy = 370.3025 kcal/mol (370.2651 without restraints) Performing minimization step: 958. Total energy = 369.9866 kcal/mol (369.9493 without restraints) Performing minimization step: 959. Total energy = 369.6712 kcal/mol (369.6340 without restraints) Performing minimization step: 960. Total energy = 369.3563 kcal/mol (369.3191 without restraints) Performing minimization step: 961. Total energy = 369.0418 kcal/mol (369.0048 without restraints) Performing minimization step: 962. Total energy = 368.7279 kcal/mol (368.6909 without restraints) Performing minimization step: 963. Total energy = 368.4144 kcal/mol (368.3775 without restraints) Performing minimization step: 964. Total energy = 368.1014 kcal/mol (368.0645 without restraints) Performing minimization step: 965. Total energy = 367.7889 kcal/mol (367.7521 without restraints) Performing minimization step: 966. Total energy = 367.4769 kcal/mol (367.4401 without restraints) Performing minimization step: 967. Total energy = 367.1653 kcal/mol (367.1286 without restraints) Performing minimization step: 968. Total energy = 366.8542 kcal/mol (366.8176 without restraints) Performing minimization step: 969. Total energy = 366.5436 kcal/mol (366.5070 without restraints) Performing minimization step: 970. Total energy = 366.2335 kcal/mol (366.1969 without restraints) Performing minimization step: 971. Total energy = 365.9238 kcal/mol (365.8873 without restraints) Performing minimization step: 972. Total energy = 365.6146 kcal/mol (365.5781 without restraints) Performing minimization step: 973. Total energy = 365.3058 kcal/mol (365.2694 without restraints) Performing minimization step: 974. Total energy = 364.9976 kcal/mol (364.9612 without restraints) Performing minimization step: 975. Total energy = 364.6897 kcal/mol (364.6534 without restraints) Performing minimization step: 976. Total energy = 364.3824 kcal/mol (364.3461 without restraints) Performing minimization step: 977. Total energy = 364.0755 kcal/mol (364.0393 without restraints) Performing minimization step: 978. Total energy = 363.7690 kcal/mol (363.7329 without restraints) Performing minimization step: 979. Total energy = 363.4631 kcal/mol (363.4270 without restraints) Performing minimization step: 980. Total energy = 363.1575 kcal/mol (363.1215 without restraints) Performing minimization step: 981. Total energy = 362.8525 kcal/mol (362.8165 without restraints) Performing minimization step: 982. Total energy = 362.5479 kcal/mol (362.5119 without restraints) Performing minimization step: 983. Total energy = 362.2437 kcal/mol (362.2078 without restraints) Performing minimization step: 984. Total energy = 361.9400 kcal/mol (361.9042 without restraints) Performing minimization step: 985. Total energy = 361.6367 kcal/mol (361.6010 without restraints) Performing minimization step: 986. Total energy = 361.3339 kcal/mol (361.2982 without restraints) Performing minimization step: 987. Total energy = 361.0315 kcal/mol (360.9959 without restraints) Performing minimization step: 988. Total energy = 360.7296 kcal/mol (360.6940 without restraints) Performing minimization step: 989. Total energy = 360.4282 kcal/mol (360.3926 without restraints) Performing minimization step: 990. Total energy = 360.1271 kcal/mol (360.0916 without restraints) Performing minimization step: 991. Total energy = 359.8265 kcal/mol (359.7911 without restraints) Performing minimization step: 992. Total energy = 359.5264 kcal/mol (359.4910 without restraints) Performing minimization step: 993. Total energy = 359.2267 kcal/mol (359.1913 without restraints) Performing minimization step: 994. Total energy = 358.9274 kcal/mol (358.8921 without restraints) Performing minimization step: 995. Total energy = 358.6286 kcal/mol (358.5934 without restraints) Performing minimization step: 996. Total energy = 358.3302 kcal/mol (358.2950 without restraints) Performing minimization step: 997. Total energy = 358.0323 kcal/mol (357.9971 without restraints) Performing minimization step: 998. Total energy = 357.7347 kcal/mol (357.6996 without restraints) Performing minimization step: 999. Total energy = 357.4376 kcal/mol (357.4026 without restraints) Performing minimization step: 1000. Total energy = 357.1410 kcal/mol (357.1060 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 356.8448 kcal/mol (356.8098 without restraints) Performing minimization step: 1002. Total energy = 356.5490 kcal/mol (356.5141 without restraints) Performing minimization step: 1003. Total energy = 356.2536 kcal/mol (356.2187 without restraints) Performing minimization step: 1004. Total energy = 355.9586 kcal/mol (355.9238 without restraints) Performing minimization step: 1005. Total energy = 355.6641 kcal/mol (355.6294 without restraints) Performing minimization step: 1006. Total energy = 355.3700 kcal/mol (355.3353 without restraints) Performing minimization step: 1007. Total energy = 355.0763 kcal/mol (355.0417 without restraints) Performing minimization step: 1008. Total energy = 354.7831 kcal/mol (354.7485 without restraints) Performing minimization step: 1009. Total energy = 354.4903 kcal/mol (354.4557 without restraints) Performing minimization step: 1010. Total energy = 354.1978 kcal/mol (354.1634 without restraints) Performing minimization step: 1011. Total energy = 353.9059 kcal/mol (353.8714 without restraints) Performing minimization step: 1012. Total energy = 353.6143 kcal/mol (353.5799 without restraints) Performing minimization step: 1013. Total energy = 353.3231 kcal/mol (353.2888 without restraints) Performing minimization step: 1014. Total energy = 353.0324 kcal/mol (352.9981 without restraints) Performing minimization step: 1015. Total energy = 352.7420 kcal/mol (352.7078 without restraints) Performing minimization step: 1016. Total energy = 352.4521 kcal/mol (352.4179 without restraints) Performing minimization step: 1017. Total energy = 352.1626 kcal/mol (352.1285 without restraints) Performing minimization step: 1018. Total energy = 351.8735 kcal/mol (351.8394 without restraints) Performing minimization step: 1019. Total energy = 351.5848 kcal/mol (351.5508 without restraints) Performing minimization step: 1020. Total energy = 351.2965 kcal/mol (351.2625 without restraints) Performing minimization step: 1021. Total energy = 351.0086 kcal/mol (350.9747 without restraints) Performing minimization step: 1022. Total energy = 350.7212 kcal/mol (350.6873 without restraints) Performing minimization step: 1023. Total energy = 350.4341 kcal/mol (350.4002 without restraints) Performing minimization step: 1024. Total energy = 350.1474 kcal/mol (350.1136 without restraints) Performing minimization step: 1025. Total energy = 349.8612 kcal/mol (349.8274 without restraints) Performing minimization step: 1026. Total energy = 349.5753 kcal/mol (349.5416 without restraints) Performing minimization step: 1027. Total energy = 349.2898 kcal/mol (349.2562 without restraints) Performing minimization step: 1028. Total energy = 349.0048 kcal/mol (348.9712 without restraints) Performing minimization step: 1029. Total energy = 348.7201 kcal/mol (348.6865 without restraints) Performing minimization step: 1030. Total energy = 348.4358 kcal/mol (348.4023 without restraints) Performing minimization step: 1031. Total energy = 348.1520 kcal/mol (348.1185 without restraints) Performing minimization step: 1032. Total energy = 347.8685 kcal/mol (347.8350 without restraints) Performing minimization step: 1033. Total energy = 347.5854 kcal/mol (347.5520 without restraints) Performing minimization step: 1034. Total energy = 347.3027 kcal/mol (347.2694 without restraints) Performing minimization step: 1035. Total energy = 347.0204 kcal/mol (346.9871 without restraints) Performing minimization step: 1036. Total energy = 346.7385 kcal/mol (346.7052 without restraints) Performing minimization step: 1037. Total energy = 346.4570 kcal/mol (346.4237 without restraints) Performing minimization step: 1038. Total energy = 346.1758 kcal/mol (346.1426 without restraints) Performing minimization step: 1039. Total energy = 345.8951 kcal/mol (345.8619 without restraints) Performing minimization step: 1040. Total energy = 345.6147 kcal/mol (345.5816 without restraints) Performing minimization step: 1041. Total energy = 345.3347 kcal/mol (345.3017 without restraints) Performing minimization step: 1042. Total energy = 345.0551 kcal/mol (345.0221 without restraints) Performing minimization step: 1043. Total energy = 344.7759 kcal/mol (344.7429 without restraints) Performing minimization step: 1044. Total energy = 344.4970 kcal/mol (344.4642 without restraints) Performing minimization step: 1045. Total energy = 344.2186 kcal/mol (344.1857 without restraints) Performing minimization step: 1046. Total energy = 343.9405 kcal/mol (343.9077 without restraints) Performing minimization step: 1047. Total energy = 343.6628 kcal/mol (343.6301 without restraints) Performing minimization step: 1048. Total energy = 343.3855 kcal/mol (343.3528 without restraints) Performing minimization step: 1049. Total energy = 343.1085 kcal/mol (343.0759 without restraints) Performing minimization step: 1050. Total energy = 342.8320 kcal/mol (342.7993 without restraints) Performing minimization step: 1051. Total energy = 342.5558 kcal/mol (342.5232 without restraints) Performing minimization step: 1052. Total energy = 342.2799 kcal/mol (342.2474 without restraints) Performing minimization step: 1053. Total energy = 342.0045 kcal/mol (341.9720 without restraints) Performing minimization step: 1054. Total energy = 341.7294 kcal/mol (341.6969 without restraints) Performing minimization step: 1055. Total energy = 341.4547 kcal/mol (341.4223 without restraints) Performing minimization step: 1056. Total energy = 341.1803 kcal/mol (341.1480 without restraints) Performing minimization step: 1057. Total energy = 340.9064 kcal/mol (340.8740 without restraints) Performing minimization step: 1058. Total energy = 340.6327 kcal/mol (340.6005 without restraints) Performing minimization step: 1059. Total energy = 340.3595 kcal/mol (340.3273 without restraints) Performing minimization step: 1060. Total energy = 340.0866 kcal/mol (340.0544 without restraints) Performing minimization step: 1061. Total energy = 339.8141 kcal/mol (339.7819 without restraints) Performing minimization step: 1062. Total energy = 339.5419 kcal/mol (339.5098 without restraints) Performing minimization step: 1063. Total energy = 339.2701 kcal/mol (339.2381 without restraints) Performing minimization step: 1064. Total energy = 338.9987 kcal/mol (338.9667 without restraints) Performing minimization step: 1065. Total energy = 338.7276 kcal/mol (338.6957 without restraints) Performing minimization step: 1066. Total energy = 338.4569 kcal/mol (338.4250 without restraints) Performing minimization step: 1067. Total energy = 338.1866 kcal/mol (338.1547 without restraints) Performing minimization step: 1068. Total energy = 337.9166 kcal/mol (337.8847 without restraints) Performing minimization step: 1069. Total energy = 337.6469 kcal/mol (337.6151 without restraints) Performing minimization step: 1070. Total energy = 337.3776 kcal/mol (337.3459 without restraints) Performing minimization step: 1071. Total energy = 337.1087 kcal/mol (337.0770 without restraints) Performing minimization step: 1072. Total energy = 336.8401 kcal/mol (336.8084 without restraints) Performing minimization step: 1073. Total energy = 336.5719 kcal/mol (336.5402 without restraints) Performing minimization step: 1074. Total energy = 336.3040 kcal/mol (336.2724 without restraints) Performing minimization step: 1075. Total energy = 336.0364 kcal/mol (336.0049 without restraints) Performing minimization step: 1076. Total energy = 335.7693 kcal/mol (335.7377 without restraints) Performing minimization step: 1077. Total energy = 335.5024 kcal/mol (335.4710 without restraints) Performing minimization step: 1078. Total energy = 335.2359 kcal/mol (335.2045 without restraints) Performing minimization step: 1079. Total energy = 334.9698 kcal/mol (334.9384 without restraints) Performing minimization step: 1080. Total energy = 334.7040 kcal/mol (334.6726 without restraints) Performing minimization step: 1081. Total energy = 334.4385 kcal/mol (334.4072 without restraints) Performing minimization step: 1082. Total energy = 334.1734 kcal/mol (334.1422 without restraints) Performing minimization step: 1083. Total energy = 333.9087 kcal/mol (333.8774 without restraints) Performing minimization step: 1084. Total energy = 333.6442 kcal/mol (333.6131 without restraints) Performing minimization step: 1085. Total energy = 333.3802 kcal/mol (333.3490 without restraints) Performing minimization step: 1086. Total energy = 333.1164 kcal/mol (333.0853 without restraints) Performing minimization step: 1087. Total energy = 332.8530 kcal/mol (332.8219 without restraints) Performing minimization step: 1088. Total energy = 332.5899 kcal/mol (332.5589 without restraints) Performing minimization step: 1089. Total energy = 332.3272 kcal/mol (332.2962 without restraints) Performing minimization step: 1090. Total energy = 332.0648 kcal/mol (332.0339 without restraints) Performing minimization step: 1091. Total energy = 331.8027 kcal/mol (331.7718 without restraints) Performing minimization step: 1092. Total energy = 331.5410 kcal/mol (331.5101 without restraints) Performing minimization step: 1093. Total energy = 331.2796 kcal/mol (331.2488 without restraints) Performing minimization step: 1094. Total energy = 331.0186 kcal/mol (330.9878 without restraints) Performing minimization step: 1095. Total energy = 330.7578 kcal/mol (330.7271 without restraints) Performing minimization step: 1096. Total energy = 330.4974 kcal/mol (330.4667 without restraints) Performing minimization step: 1097. Total energy = 330.2374 kcal/mol (330.2067 without restraints) Performing minimization step: 1098. Total energy = 329.9776 kcal/mol (329.9470 without restraints) Performing minimization step: 1099. Total energy = 329.7182 kcal/mol (329.6876 without restraints) Performing minimization step: 1100. Total energy = 329.4591 kcal/mol (329.4286 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 329.2004 kcal/mol (329.1698 without restraints) Performing minimization step: 1102. Total energy = 328.9419 kcal/mol (328.9115 without restraints) Performing minimization step: 1103. Total energy = 328.6838 kcal/mol (328.6534 without restraints) Performing minimization step: 1104. Total energy = 328.4260 kcal/mol (328.3956 without restraints) Performing minimization step: 1105. Total energy = 328.1686 kcal/mol (328.1382 without restraints) Performing minimization step: 1106. Total energy = 327.9114 kcal/mol (327.8811 without restraints) Performing minimization step: 1107. Total energy = 327.6546 kcal/mol (327.6243 without restraints) Performing minimization step: 1108. Total energy = 327.3981 kcal/mol (327.3679 without restraints) Performing minimization step: 1109. Total energy = 327.1419 kcal/mol (327.1117 without restraints) Performing minimization step: 1110. Total energy = 326.8861 kcal/mol (326.8559 without restraints) Performing minimization step: 1111. Total energy = 326.6305 kcal/mol (326.6004 without restraints) Performing minimization step: 1112. Total energy = 326.3753 kcal/mol (326.3452 without restraints) Performing minimization step: 1113. Total energy = 326.1204 kcal/mol (326.0903 without restraints) Performing minimization step: 1114. Total energy = 325.8658 kcal/mol (325.8358 without restraints) Performing minimization step: 1115. Total energy = 325.6115 kcal/mol (325.5815 without restraints) Performing minimization step: 1116. Total energy = 325.3576 kcal/mol (325.3276 without restraints) Performing minimization step: 1117. Total energy = 325.1039 kcal/mol (325.0740 without restraints) Performing minimization step: 1118. Total energy = 324.8506 kcal/mol (324.8207 without restraints) Performing minimization step: 1119. Total energy = 324.5975 kcal/mol (324.5677 without restraints) Performing minimization step: 1120. Total energy = 324.3448 kcal/mol (324.3150 without restraints) Performing minimization step: 1121. Total energy = 324.0924 kcal/mol (324.0626 without restraints) Performing minimization step: 1122. Total energy = 323.8403 kcal/mol (323.8106 without restraints) Performing minimization step: 1123. Total energy = 323.5885 kcal/mol (323.5588 without restraints) Performing minimization step: 1124. Total energy = 323.3370 kcal/mol (323.3074 without restraints) Performing minimization step: 1125. Total energy = 323.0858 kcal/mol (323.0562 without restraints) Performing minimization step: 1126. Total energy = 322.8350 kcal/mol (322.8054 without restraints) Performing minimization step: 1127. Total energy = 322.5844 kcal/mol (322.5548 without restraints) Performing minimization step: 1128. Total energy = 322.3341 kcal/mol (322.3046 without restraints) Performing minimization step: 1129. Total energy = 322.0842 kcal/mol (322.0547 without restraints) Performing minimization step: 1130. Total energy = 321.8345 kcal/mol (321.8051 without restraints) Performing minimization step: 1131. Total energy = 321.5852 kcal/mol (321.5557 without restraints) Performing minimization step: 1132. Total energy = 321.3361 kcal/mol (321.3067 without restraints) Performing minimization step: 1133. Total energy = 321.0873 kcal/mol (321.0580 without restraints) Performing minimization step: 1134. Total energy = 320.8389 kcal/mol (320.8096 without restraints) Performing minimization step: 1135. Total energy = 320.5907 kcal/mol (320.5615 without restraints) Performing minimization step: 1136. Total energy = 320.3429 kcal/mol (320.3136 without restraints) Performing minimization step: 1137. Total energy = 320.0953 kcal/mol (320.0661 without restraints) Performing minimization step: 1138. Total energy = 319.8480 kcal/mol (319.8189 without restraints) Performing minimization step: 1139. Total energy = 319.6011 kcal/mol (319.5719 without restraints) Performing minimization step: 1140. Total energy = 319.3544 kcal/mol (319.3253 without restraints) Performing minimization step: 1141. Total energy = 319.1080 kcal/mol (319.0789 without restraints) Performing minimization step: 1142. Total energy = 318.8619 kcal/mol (318.8329 without restraints) Performing minimization step: 1143. Total energy = 318.6161 kcal/mol (318.5871 without restraints) Performing minimization step: 1144. Total energy = 318.3706 kcal/mol (318.3416 without restraints) Performing minimization step: 1145. Total energy = 318.1254 kcal/mol (318.0965 without restraints) Performing minimization step: 1146. Total energy = 317.8805 kcal/mol (317.8516 without restraints) Performing minimization step: 1147. Total energy = 317.6358 kcal/mol (317.6070 without restraints) Performing minimization step: 1148. Total energy = 317.3915 kcal/mol (317.3627 without restraints) Performing minimization step: 1149. Total energy = 317.1474 kcal/mol (317.1186 without restraints) Performing minimization step: 1150. Total energy = 316.9037 kcal/mol (316.8749 without restraints) Performing minimization step: 1151. Total energy = 316.6602 kcal/mol (316.6315 without restraints) Performing minimization step: 1152. Total energy = 316.4170 kcal/mol (316.3883 without restraints) Performing minimization step: 1153. Total energy = 316.1741 kcal/mol (316.1454 without restraints) Performing minimization step: 1154. Total energy = 315.9315 kcal/mol (315.9028 without restraints) Performing minimization step: 1155. Total energy = 315.6891 kcal/mol (315.6605 without restraints) Performing minimization step: 1156. Total energy = 315.4471 kcal/mol (315.4185 without restraints) Performing minimization step: 1157. Total energy = 315.2053 kcal/mol (315.1768 without restraints) Performing minimization step: 1158. Total energy = 314.9638 kcal/mol (314.9353 without restraints) Performing minimization step: 1159. Total energy = 314.7226 kcal/mol (314.6941 without restraints) Performing minimization step: 1160. Total energy = 314.4816 kcal/mol (314.4532 without restraints) Performing minimization step: 1161. Total energy = 314.2410 kcal/mol (314.2126 without restraints) Performing minimization step: 1162. Total energy = 314.0006 kcal/mol (313.9723 without restraints) Performing minimization step: 1163. Total energy = 313.7605 kcal/mol (313.7322 without restraints) Performing minimization step: 1164. Total energy = 313.5207 kcal/mol (313.4924 without restraints) Performing minimization step: 1165. Total energy = 313.2812 kcal/mol (313.2529 without restraints) Performing minimization step: 1166. Total energy = 313.0419 kcal/mol (313.0137 without restraints) Performing minimization step: 1167. Total energy = 312.8029 kcal/mol (312.7747 without restraints) Performing minimization step: 1168. Total energy = 312.5642 kcal/mol (312.5360 without restraints) Performing minimization step: 1169. Total energy = 312.3257 kcal/mol (312.2976 without restraints) Performing minimization step: 1170. Total energy = 312.0876 kcal/mol (312.0595 without restraints) Performing minimization step: 1171. Total energy = 311.8497 kcal/mol (311.8216 without restraints) Performing minimization step: 1172. Total energy = 311.6121 kcal/mol (311.5840 without restraints) Performing minimization step: 1173. Total energy = 311.3747 kcal/mol (311.3467 without restraints) Performing minimization step: 1174. Total energy = 311.1376 kcal/mol (311.1097 without restraints) Performing minimization step: 1175. Total energy = 310.9008 kcal/mol (310.8729 without restraints) Performing minimization step: 1176. Total energy = 310.6643 kcal/mol (310.6364 without restraints) Performing minimization step: 1177. Total energy = 310.4280 kcal/mol (310.4002 without restraints) Performing minimization step: 1178. Total energy = 310.1920 kcal/mol (310.1642 without restraints) Performing minimization step: 1179. Total energy = 309.9563 kcal/mol (309.9285 without restraints) Performing minimization step: 1180. Total energy = 309.7208 kcal/mol (309.6931 without restraints) Performing minimization step: 1181. Total energy = 309.4856 kcal/mol (309.4579 without restraints) Performing minimization step: 1182. Total energy = 309.2507 kcal/mol (309.2230 without restraints) Performing minimization step: 1183. Total energy = 309.0160 kcal/mol (308.9883 without restraints) Performing minimization step: 1184. Total energy = 308.7816 kcal/mol (308.7540 without restraints) Performing minimization step: 1185. Total energy = 308.5475 kcal/mol (308.5199 without restraints) Performing minimization step: 1186. Total energy = 308.3136 kcal/mol (308.2860 without restraints) Performing minimization step: 1187. Total energy = 308.0800 kcal/mol (308.0524 without restraints) Performing minimization step: 1188. Total energy = 307.8466 kcal/mol (307.8191 without restraints) Performing minimization step: 1189. Total energy = 307.6136 kcal/mol (307.5861 without restraints) Performing minimization step: 1190. Total energy = 307.3807 kcal/mol (307.3533 without restraints) Performing minimization step: 1191. Total energy = 307.1482 kcal/mol (307.1207 without restraints) Performing minimization step: 1192. Total energy = 306.9158 kcal/mol (306.8884 without restraints) Performing minimization step: 1193. Total energy = 306.6838 kcal/mol (306.6564 without restraints) Performing minimization step: 1194. Total energy = 306.4520 kcal/mol (306.4247 without restraints) Performing minimization step: 1195. Total energy = 306.2205 kcal/mol (306.1932 without restraints) Performing minimization step: 1196. Total energy = 305.9892 kcal/mol (305.9619 without restraints) Performing minimization step: 1197. Total energy = 305.7582 kcal/mol (305.7309 without restraints) Performing minimization step: 1198. Total energy = 305.5274 kcal/mol (305.5002 without restraints) Performing minimization step: 1199. Total energy = 305.2969 kcal/mol (305.2697 without restraints) Performing minimization step: 1200. Total energy = 305.0666 kcal/mol (305.0395 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 304.8366 kcal/mol (304.8095 without restraints) Performing minimization step: 1202. Total energy = 304.6069 kcal/mol (304.5798 without restraints) Performing minimization step: 1203. Total energy = 304.3774 kcal/mol (304.3503 without restraints) Performing minimization step: 1204. Total energy = 304.1482 kcal/mol (304.1211 without restraints) Performing minimization step: 1205. Total energy = 303.9192 kcal/mol (303.8922 without restraints) Performing minimization step: 1206. Total energy = 303.6904 kcal/mol (303.6634 without restraints) Performing minimization step: 1207. Total energy = 303.4619 kcal/mol (303.4350 without restraints) Performing minimization step: 1208. Total energy = 303.2337 kcal/mol (303.2068 without restraints) Performing minimization step: 1209. Total energy = 303.0057 kcal/mol (302.9788 without restraints) Performing minimization step: 1210. Total energy = 302.7780 kcal/mol (302.7511 without restraints) Performing minimization step: 1211. Total energy = 302.5505 kcal/mol (302.5236 without restraints) Performing minimization step: 1212. Total energy = 302.3232 kcal/mol (302.2964 without restraints) Performing minimization step: 1213. Total energy = 302.0962 kcal/mol (302.0695 without restraints) Performing minimization step: 1214. Total energy = 301.8695 kcal/mol (301.8427 without restraints) Performing minimization step: 1215. Total energy = 301.6430 kcal/mol (301.6163 without restraints) Performing minimization step: 1216. Total energy = 301.4167 kcal/mol (301.3900 without restraints) Performing minimization step: 1217. Total energy = 301.1907 kcal/mol (301.1641 without restraints) Performing minimization step: 1218. Total energy = 300.9650 kcal/mol (300.9383 without restraints) Performing minimization step: 1219. Total energy = 300.7394 kcal/mol (300.7128 without restraints) Performing minimization step: 1220. Total energy = 300.5141 kcal/mol (300.4876 without restraints) Performing minimization step: 1221. Total energy = 300.2891 kcal/mol (300.2626 without restraints) Performing minimization step: 1222. Total energy = 300.0643 kcal/mol (300.0378 without restraints) Performing minimization step: 1223. Total energy = 299.8398 kcal/mol (299.8133 without restraints) Performing minimization step: 1224. Total energy = 299.6154 kcal/mol (299.5890 without restraints) Performing minimization step: 1225. Total energy = 299.3914 kcal/mol (299.3649 without restraints) Performing minimization step: 1226. Total energy = 299.1675 kcal/mol (299.1411 without restraints) Performing minimization step: 1227. Total energy = 298.9439 kcal/mol (298.9176 without restraints) Performing minimization step: 1228. Total energy = 298.7206 kcal/mol (298.6942 without restraints) Performing minimization step: 1229. Total energy = 298.4975 kcal/mol (298.4711 without restraints) Performing minimization step: 1230. Total energy = 298.2746 kcal/mol (298.2483 without restraints) Performing minimization step: 1231. Total energy = 298.0519 kcal/mol (298.0257 without restraints) Performing minimization step: 1232. Total energy = 297.8295 kcal/mol (297.8033 without restraints) Performing minimization step: 1233. Total energy = 297.6074 kcal/mol (297.5812 without restraints) Performing minimization step: 1234. Total energy = 297.3854 kcal/mol (297.3593 without restraints) Performing minimization step: 1235. Total energy = 297.1637 kcal/mol (297.1376 without restraints) Performing minimization step: 1236. Total energy = 296.9423 kcal/mol (296.9162 without restraints) Performing minimization step: 1237. Total energy = 296.7211 kcal/mol (296.6950 without restraints) Performing minimization step: 1238. Total energy = 296.5001 kcal/mol (296.4740 without restraints) Performing minimization step: 1239. Total energy = 296.2793 kcal/mol (296.2533 without restraints) Performing minimization step: 1240. Total energy = 296.0588 kcal/mol (296.0328 without restraints) Performing minimization step: 1241. Total energy = 295.8385 kcal/mol (295.8125 without restraints) Performing minimization step: 1242. Total energy = 295.6184 kcal/mol (295.5924 without restraints) Performing minimization step: 1243. Total energy = 295.3986 kcal/mol (295.3726 without restraints) Performing minimization step: 1244. Total energy = 295.1790 kcal/mol (295.1531 without restraints) Performing minimization step: 1245. Total energy = 294.9596 kcal/mol (294.9337 without restraints) Performing minimization step: 1246. Total energy = 294.7404 kcal/mol (294.7146 without restraints) Performing minimization step: 1247. Total energy = 294.5215 kcal/mol (294.4957 without restraints) Performing minimization step: 1248. Total energy = 294.3028 kcal/mol (294.2770 without restraints) Performing minimization step: 1249. Total energy = 294.0844 kcal/mol (294.0586 without restraints) Performing minimization step: 1250. Total energy = 293.8662 kcal/mol (293.8404 without restraints) Performing minimization step: 1251. Total energy = 293.6482 kcal/mol (293.6224 without restraints) Performing minimization step: 1252. Total energy = 293.4304 kcal/mol (293.4047 without restraints) Performing minimization step: 1253. Total energy = 293.2128 kcal/mol (293.1872 without restraints) Performing minimization step: 1254. Total energy = 292.9955 kcal/mol (292.9699 without restraints) Performing minimization step: 1255. Total energy = 292.7784 kcal/mol (292.7528 without restraints) Performing minimization step: 1256. Total energy = 292.5615 kcal/mol (292.5359 without restraints) Performing minimization step: 1257. Total energy = 292.3449 kcal/mol (292.3193 without restraints) Performing minimization step: 1258. Total energy = 292.1285 kcal/mol (292.1029 without restraints) Performing minimization step: 1259. Total energy = 291.9122 kcal/mol (291.8867 without restraints) Performing minimization step: 1260. Total energy = 291.6963 kcal/mol (291.6708 without restraints) Performing minimization step: 1261. Total energy = 291.4805 kcal/mol (291.4551 without restraints) Performing minimization step: 1262. Total energy = 291.2650 kcal/mol (291.2395 without restraints) Performing minimization step: 1263. Total energy = 291.0497 kcal/mol (291.0243 without restraints) Performing minimization step: 1264. Total energy = 290.8346 kcal/mol (290.8092 without restraints) Performing minimization step: 1265. Total energy = 290.6197 kcal/mol (290.5943 without restraints) Performing minimization step: 1266. Total energy = 290.4050 kcal/mol (290.3797 without restraints) Performing minimization step: 1267. Total energy = 290.1906 kcal/mol (290.1653 without restraints) Performing minimization step: 1268. Total energy = 289.9764 kcal/mol (289.9511 without restraints) Performing minimization step: 1269. Total energy = 289.7624 kcal/mol (289.7371 without restraints) Performing minimization step: 1270. Total energy = 289.5486 kcal/mol (289.5234 without restraints) Performing minimization step: 1271. Total energy = 289.3350 kcal/mol (289.3098 without restraints) Performing minimization step: 1272. Total energy = 289.1217 kcal/mol (289.0965 without restraints) Performing minimization step: 1273. Total energy = 288.9086 kcal/mol (288.8834 without restraints) Performing minimization step: 1274. Total energy = 288.6957 kcal/mol (288.6705 without restraints) Performing minimization step: 1275. Total energy = 288.4830 kcal/mol (288.4579 without restraints) Performing minimization step: 1276. Total energy = 288.2705 kcal/mol (288.2454 without restraints) Performing minimization step: 1277. Total energy = 288.0582 kcal/mol (288.0332 without restraints) Performing minimization step: 1278. Total energy = 287.8462 kcal/mol (287.8212 without restraints) Performing minimization step: 1279. Total energy = 287.6343 kcal/mol (287.6093 without restraints) Performing minimization step: 1280. Total energy = 287.4227 kcal/mol (287.3977 without restraints) Performing minimization step: 1281. Total energy = 287.2113 kcal/mol (287.1864 without restraints) Performing minimization step: 1282. Total energy = 287.0001 kcal/mol (286.9752 without restraints) Performing minimization step: 1283. Total energy = 286.7891 kcal/mol (286.7642 without restraints) Performing minimization step: 1284. Total energy = 286.5783 kcal/mol (286.5535 without restraints) Performing minimization step: 1285. Total energy = 286.3678 kcal/mol (286.3429 without restraints) Performing minimization step: 1286. Total energy = 286.1574 kcal/mol (286.1326 without restraints) Performing minimization step: 1287. Total energy = 285.9473 kcal/mol (285.9225 without restraints) Performing minimization step: 1288. Total energy = 285.7374 kcal/mol (285.7126 without restraints) Performing minimization step: 1289. Total energy = 285.5276 kcal/mol (285.5029 without restraints) Performing minimization step: 1290. Total energy = 285.3181 kcal/mol (285.2934 without restraints) Performing minimization step: 1291. Total energy = 285.1088 kcal/mol (285.0841 without restraints) Performing minimization step: 1292. Total energy = 284.8997 kcal/mol (284.8751 without restraints) Performing minimization step: 1293. Total energy = 284.6908 kcal/mol (284.6662 without restraints) Performing minimization step: 1294. Total energy = 284.4822 kcal/mol (284.4575 without restraints) Performing minimization step: 1295. Total energy = 284.2737 kcal/mol (284.2491 without restraints) Performing minimization step: 1296. Total energy = 284.0654 kcal/mol (284.0409 without restraints) Performing minimization step: 1297. Total energy = 283.8574 kcal/mol (283.8328 without restraints) Performing minimization step: 1298. Total energy = 283.6495 kcal/mol (283.6250 without restraints) Performing minimization step: 1299. Total energy = 283.4419 kcal/mol (283.4174 without restraints) Performing minimization step: 1300. Total energy = 283.2344 kcal/mol (283.2100 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 283.0272 kcal/mol (283.0027 without restraints) Performing minimization step: 1302. Total energy = 282.8202 kcal/mol (282.7957 without restraints) Performing minimization step: 1303. Total energy = 282.6133 kcal/mol (282.5889 without restraints) Performing minimization step: 1304. Total energy = 282.4067 kcal/mol (282.3823 without restraints) Performing minimization step: 1305. Total energy = 282.2003 kcal/mol (282.1759 without restraints) Performing minimization step: 1306. Total energy = 281.9941 kcal/mol (281.9697 without restraints) Performing minimization step: 1307. Total energy = 281.7880 kcal/mol (281.7637 without restraints) Performing minimization step: 1308. Total energy = 281.5822 kcal/mol (281.5580 without restraints) Performing minimization step: 1309. Total energy = 281.3766 kcal/mol (281.3524 without restraints) Performing minimization step: 1310. Total energy = 281.1712 kcal/mol (281.1470 without restraints) Performing minimization step: 1311. Total energy = 280.9660 kcal/mol (280.9418 without restraints) Performing minimization step: 1312. Total energy = 280.7610 kcal/mol (280.7368 without restraints) Performing minimization step: 1313. Total energy = 280.5562 kcal/mol (280.5320 without restraints) Performing minimization step: 1314. Total energy = 280.3516 kcal/mol (280.3274 without restraints) Performing minimization step: 1315. Total energy = 280.1471 kcal/mol (280.1230 without restraints) Performing minimization step: 1316. Total energy = 279.9429 kcal/mol (279.9188 without restraints) Performing minimization step: 1317. Total energy = 279.7389 kcal/mol (279.7148 without restraints) Performing minimization step: 1318. Total energy = 279.5351 kcal/mol (279.5110 without restraints) Performing minimization step: 1319. Total energy = 279.3315 kcal/mol (279.3074 without restraints) Performing minimization step: 1320. Total energy = 279.1280 kcal/mol (279.1040 without restraints) Performing minimization step: 1321. Total energy = 278.9248 kcal/mol (278.9008 without restraints) Performing minimization step: 1322. Total energy = 278.7218 kcal/mol (278.6978 without restraints) Performing minimization step: 1323. Total energy = 278.5189 kcal/mol (278.4950 without restraints) Performing minimization step: 1324. Total energy = 278.3163 kcal/mol (278.2924 without restraints) Performing minimization step: 1325. Total energy = 278.1139 kcal/mol (278.0900 without restraints) Performing minimization step: 1326. Total energy = 277.9116 kcal/mol (277.8877 without restraints) Performing minimization step: 1327. Total energy = 277.7095 kcal/mol (277.6857 without restraints) Performing minimization step: 1328. Total energy = 277.5077 kcal/mol (277.4839 without restraints) Performing minimization step: 1329. Total energy = 277.3060 kcal/mol (277.2822 without restraints) Performing minimization step: 1330. Total energy = 277.1045 kcal/mol (277.0808 without restraints) Performing minimization step: 1331. Total energy = 276.9033 kcal/mol (276.8795 without restraints) Performing minimization step: 1332. Total energy = 276.7022 kcal/mol (276.6784 without restraints) Performing minimization step: 1333. Total energy = 276.5013 kcal/mol (276.4776 without restraints) Performing minimization step: 1334. Total energy = 276.3006 kcal/mol (276.2769 without restraints) Performing minimization step: 1335. Total energy = 276.1001 kcal/mol (276.0764 without restraints) Performing minimization step: 1336. Total energy = 275.8997 kcal/mol (275.8761 without restraints) Performing minimization step: 1337. Total energy = 275.6996 kcal/mol (275.6760 without restraints) Performing minimization step: 1338. Total energy = 275.4997 kcal/mol (275.4761 without restraints) Performing minimization step: 1339. Total energy = 275.2999 kcal/mol (275.2763 without restraints) Performing minimization step: 1340. Total energy = 275.1003 kcal/mol (275.0768 without restraints) Performing minimization step: 1341. Total energy = 274.9010 kcal/mol (274.8775 without restraints) Performing minimization step: 1342. Total energy = 274.7018 kcal/mol (274.6783 without restraints) Performing minimization step: 1343. Total energy = 274.5028 kcal/mol (274.4793 without restraints) Performing minimization step: 1344. Total energy = 274.3040 kcal/mol (274.2805 without restraints) Performing minimization step: 1345. Total energy = 274.1054 kcal/mol (274.0819 without restraints) Performing minimization step: 1346. Total energy = 273.9069 kcal/mol (273.8835 without restraints) Performing minimization step: 1347. Total energy = 273.7087 kcal/mol (273.6853 without restraints) Performing minimization step: 1348. Total energy = 273.5106 kcal/mol (273.4873 without restraints) Performing minimization step: 1349. Total energy = 273.3128 kcal/mol (273.2894 without restraints) Performing minimization step: 1350. Total energy = 273.1151 kcal/mol (273.0918 without restraints) Performing minimization step: 1351. Total energy = 272.9176 kcal/mol (272.8943 without restraints) Performing minimization step: 1352. Total energy = 272.7203 kcal/mol (272.6970 without restraints) Performing minimization step: 1353. Total energy = 272.5231 kcal/mol (272.4999 without restraints) Performing minimization step: 1354. Total energy = 272.3262 kcal/mol (272.3030 without restraints) Performing minimization step: 1355. Total energy = 272.1294 kcal/mol (272.1062 without restraints) Performing minimization step: 1356. Total energy = 271.9329 kcal/mol (271.9097 without restraints) Performing minimization step: 1357. Total energy = 271.7365 kcal/mol (271.7133 without restraints) Performing minimization step: 1358. Total energy = 271.5403 kcal/mol (271.5171 without restraints) Performing minimization step: 1359. Total energy = 271.3442 kcal/mol (271.3211 without restraints) Performing minimization step: 1360. Total energy = 271.1484 kcal/mol (271.1253 without restraints) Performing minimization step: 1361. Total energy = 270.9527 kcal/mol (270.9297 without restraints) Performing minimization step: 1362. Total energy = 270.7573 kcal/mol (270.7342 without restraints) Performing minimization step: 1363. Total energy = 270.5620 kcal/mol (270.5389 without restraints) Performing minimization step: 1364. Total energy = 270.3669 kcal/mol (270.3438 without restraints) Performing minimization step: 1365. Total energy = 270.1719 kcal/mol (270.1489 without restraints) Performing minimization step: 1366. Total energy = 269.9772 kcal/mol (269.9542 without restraints) Performing minimization step: 1367. Total energy = 269.7826 kcal/mol (269.7596 without restraints) Performing minimization step: 1368. Total energy = 269.5882 kcal/mol (269.5653 without restraints) Performing minimization step: 1369. Total energy = 269.3940 kcal/mol (269.3711 without restraints) Performing minimization step: 1370. Total energy = 269.2000 kcal/mol (269.1771 without restraints) Performing minimization step: 1371. Total energy = 269.0061 kcal/mol (268.9832 without restraints) Performing minimization step: 1372. Total energy = 268.8124 kcal/mol (268.7896 without restraints) Performing minimization step: 1373. Total energy = 268.6189 kcal/mol (268.5961 without restraints) Performing minimization step: 1374. Total energy = 268.4256 kcal/mol (268.4028 without restraints) Performing minimization step: 1375. Total energy = 268.2325 kcal/mol (268.2097 without restraints) Performing minimization step: 1376. Total energy = 268.0395 kcal/mol (268.0167 without restraints) Performing minimization step: 1377. Total energy = 267.8467 kcal/mol (267.8240 without restraints) Performing minimization step: 1378. Total energy = 267.6541 kcal/mol (267.6314 without restraints) Performing minimization step: 1379. Total energy = 267.4617 kcal/mol (267.4390 without restraints) Performing minimization step: 1380. Total energy = 267.2694 kcal/mol (267.2467 without restraints) Performing minimization step: 1381. Total energy = 267.0774 kcal/mol (267.0547 without restraints) Performing minimization step: 1382. Total energy = 266.8854 kcal/mol (266.8628 without restraints) Performing minimization step: 1383. Total energy = 266.6937 kcal/mol (266.6711 without restraints) Performing minimization step: 1384. Total energy = 266.5022 kcal/mol (266.4796 without restraints) Performing minimization step: 1385. Total energy = 266.3108 kcal/mol (266.2882 without restraints) Performing minimization step: 1386. Total energy = 266.1196 kcal/mol (266.0970 without restraints) Performing minimization step: 1387. Total energy = 265.9285 kcal/mol (265.9060 without restraints) Performing minimization step: 1388. Total energy = 265.7377 kcal/mol (265.7152 without restraints) Performing minimization step: 1389. Total energy = 265.5470 kcal/mol (265.5245 without restraints) Performing minimization step: 1390. Total energy = 265.3565 kcal/mol (265.3340 without restraints) Performing minimization step: 1391. Total energy = 265.1662 kcal/mol (265.1437 without restraints) Performing minimization step: 1392. Total energy = 264.9760 kcal/mol (264.9536 without restraints) Performing minimization step: 1393. Total energy = 264.7860 kcal/mol (264.7636 without restraints) Performing minimization step: 1394. Total energy = 264.5962 kcal/mol (264.5738 without restraints) Performing minimization step: 1395. Total energy = 264.4065 kcal/mol (264.3842 without restraints) Performing minimization step: 1396. Total energy = 264.2171 kcal/mol (264.1947 without restraints) Performing minimization step: 1397. Total energy = 264.0277 kcal/mol (264.0054 without restraints) Performing minimization step: 1398. Total energy = 263.8386 kcal/mol (263.8163 without restraints) Performing minimization step: 1399. Total energy = 263.6496 kcal/mol (263.6274 without restraints) Performing minimization step: 1400. Total energy = 263.4609 kcal/mol (263.4386 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 263.2722 kcal/mol (263.2500 without restraints) Performing minimization step: 1402. Total energy = 263.0838 kcal/mol (263.0615 without restraints) Performing minimization step: 1403. Total energy = 262.8955 kcal/mol (262.8733 without restraints) Performing minimization step: 1404. Total energy = 262.7074 kcal/mol (262.6852 without restraints) Performing minimization step: 1405. Total energy = 262.5194 kcal/mol (262.4972 without restraints) Performing minimization step: 1406. Total energy = 262.3316 kcal/mol (262.3095 without restraints) Performing minimization step: 1407. Total energy = 262.1440 kcal/mol (262.1219 without restraints) Performing minimization step: 1408. Total energy = 261.9566 kcal/mol (261.9345 without restraints) Performing minimization step: 1409. Total energy = 261.7693 kcal/mol (261.7472 without restraints) Performing minimization step: 1410. Total energy = 261.5822 kcal/mol (261.5601 without restraints) Performing minimization step: 1411. Total energy = 261.3953 kcal/mol (261.3732 without restraints) Performing minimization step: 1412. Total energy = 261.2085 kcal/mol (261.1864 without restraints) Performing minimization step: 1413. Total energy = 261.0219 kcal/mol (260.9999 without restraints) Performing minimization step: 1414. Total energy = 260.8354 kcal/mol (260.8134 without restraints) Performing minimization step: 1415. Total energy = 260.6492 kcal/mol (260.6272 without restraints) Performing minimization step: 1416. Total energy = 260.4630 kcal/mol (260.4411 without restraints) Performing minimization step: 1417. Total energy = 260.2771 kcal/mol (260.2552 without restraints) Performing minimization step: 1418. Total energy = 260.0913 kcal/mol (260.0694 without restraints) Performing minimization step: 1419. Total energy = 259.9057 kcal/mol (259.8838 without restraints) Performing minimization step: 1420. Total energy = 259.7202 kcal/mol (259.6984 without restraints) Performing minimization step: 1421. Total energy = 259.5350 kcal/mol (259.5131 without restraints) Performing minimization step: 1422. Total energy = 259.3498 kcal/mol (259.3280 without restraints) Performing minimization step: 1423. Total energy = 259.1649 kcal/mol (259.1431 without restraints) Performing minimization step: 1424. Total energy = 258.9801 kcal/mol (258.9583 without restraints) Performing minimization step: 1425. Total energy = 258.7954 kcal/mol (258.7737 without restraints) Performing minimization step: 1426. Total energy = 258.6110 kcal/mol (258.5892 without restraints) Performing minimization step: 1427. Total energy = 258.4267 kcal/mol (258.4049 without restraints) Performing minimization step: 1428. Total energy = 258.2425 kcal/mol (258.2208 without restraints) Performing minimization step: 1429. Total energy = 258.0585 kcal/mol (258.0368 without restraints) Performing minimization step: 1430. Total energy = 257.8747 kcal/mol (257.8530 without restraints) Performing minimization step: 1431. Total energy = 257.6911 kcal/mol (257.6694 without restraints) Performing minimization step: 1432. Total energy = 257.5076 kcal/mol (257.4859 without restraints) Performing minimization step: 1433. Total energy = 257.3242 kcal/mol (257.3026 without restraints) Performing minimization step: 1434. Total energy = 257.1410 kcal/mol (257.1194 without restraints) Performing minimization step: 1435. Total energy = 256.9580 kcal/mol (256.9364 without restraints) Performing minimization step: 1436. Total energy = 256.7752 kcal/mol (256.7536 without restraints) Performing minimization step: 1437. Total energy = 256.5925 kcal/mol (256.5709 without restraints) Performing minimization step: 1438. Total energy = 256.4099 kcal/mol (256.3884 without restraints) Performing minimization step: 1439. Total energy = 256.2276 kcal/mol (256.2060 without restraints) Performing minimization step: 1440. Total energy = 256.0453 kcal/mol (256.0238 without restraints) Performing minimization step: 1441. Total energy = 255.8633 kcal/mol (255.8418 without restraints) Performing minimization step: 1442. Total energy = 255.6814 kcal/mol (255.6599 without restraints) Performing minimization step: 1443. Total energy = 255.4996 kcal/mol (255.4782 without restraints) Performing minimization step: 1444. Total energy = 255.3180 kcal/mol (255.2966 without restraints) Performing minimization step: 1445. Total energy = 255.1366 kcal/mol (255.1152 without restraints) Performing minimization step: 1446. Total energy = 254.9554 kcal/mol (254.9340 without restraints) Performing minimization step: 1447. Total energy = 254.7742 kcal/mol (254.7529 without restraints) Performing minimization step: 1448. Total energy = 254.5933 kcal/mol (254.5719 without restraints) Performing minimization step: 1449. Total energy = 254.4125 kcal/mol (254.3912 without restraints) Performing minimization step: 1450. Total energy = 254.2318 kcal/mol (254.2105 without restraints) Performing minimization step: 1451. Total energy = 254.0514 kcal/mol (254.0301 without restraints) Performing minimization step: 1452. Total energy = 253.8710 kcal/mol (253.8498 without restraints) Performing minimization step: 1453. Total energy = 253.6909 kcal/mol (253.6696 without restraints) Performing minimization step: 1454. Total energy = 253.5108 kcal/mol (253.4896 without restraints) Performing minimization step: 1455. Total energy = 253.3310 kcal/mol (253.3098 without restraints) Performing minimization step: 1456. Total energy = 253.1513 kcal/mol (253.1301 without restraints) Performing minimization step: 1457. Total energy = 252.9717 kcal/mol (252.9505 without restraints) Performing minimization step: 1458. Total energy = 252.7923 kcal/mol (252.7712 without restraints) Performing minimization step: 1459. Total energy = 252.6131 kcal/mol (252.5919 without restraints) Performing minimization step: 1460. Total energy = 252.4340 kcal/mol (252.4129 without restraints) Performing minimization step: 1461. Total energy = 252.2551 kcal/mol (252.2339 without restraints) Performing minimization step: 1462. Total energy = 252.0763 kcal/mol (252.0552 without restraints) Performing minimization step: 1463. Total energy = 251.8976 kcal/mol (251.8766 without restraints) Performing minimization step: 1464. Total energy = 251.7192 kcal/mol (251.6981 without restraints) Performing minimization step: 1465. Total energy = 251.5409 kcal/mol (251.5198 without restraints) Performing minimization step: 1466. Total energy = 251.3627 kcal/mol (251.3417 without restraints) Performing minimization step: 1467. Total energy = 251.1847 kcal/mol (251.1637 without restraints) Performing minimization step: 1468. Total energy = 251.0068 kcal/mol (250.9858 without restraints) Performing minimization step: 1469. Total energy = 250.8291 kcal/mol (250.8081 without restraints) Performing minimization step: 1470. Total energy = 250.6515 kcal/mol (250.6306 without restraints) Performing minimization step: 1471. Total energy = 250.4741 kcal/mol (250.4532 without restraints) Performing minimization step: 1472. Total energy = 250.2969 kcal/mol (250.2759 without restraints) Performing minimization step: 1473. Total energy = 250.1198 kcal/mol (250.0989 without restraints) Performing minimization step: 1474. Total energy = 249.9428 kcal/mol (249.9219 without restraints) Performing minimization step: 1475. Total energy = 249.7660 kcal/mol (249.7451 without restraints) Performing minimization step: 1476. Total energy = 249.5893 kcal/mol (249.5685 without restraints) Performing minimization step: 1477. Total energy = 249.4128 kcal/mol (249.3920 without restraints) Performing minimization step: 1478. Total energy = 249.2366 kcal/mol (249.2159 without restraints) Performing minimization step: 1479. Total energy = 249.0605 kcal/mol (249.0397 without restraints) Performing minimization step: 1480. Total energy = 248.8845 kcal/mol (248.8637 without restraints) Performing minimization step: 1481. Total energy = 248.7086 kcal/mol (248.6878 without restraints) Performing minimization step: 1482. Total energy = 248.5328 kcal/mol (248.5121 without restraints) Performing minimization step: 1483. Total energy = 248.3572 kcal/mol (248.3365 without restraints) Performing minimization step: 1484. Total energy = 248.1817 kcal/mol (248.1610 without restraints) Performing minimization step: 1485. Total energy = 248.0064 kcal/mol (247.9857 without restraints) Performing minimization step: 1486. Total energy = 247.8312 kcal/mol (247.8106 without restraints) Performing minimization step: 1487. Total energy = 247.6562 kcal/mol (247.6356 without restraints) Performing minimization step: 1488. Total energy = 247.4814 kcal/mol (247.4607 without restraints) Performing minimization step: 1489. Total energy = 247.3066 kcal/mol (247.2860 without restraints) Performing minimization step: 1490. Total energy = 247.1321 kcal/mol (247.1115 without restraints) Performing minimization step: 1491. Total energy = 246.9576 kcal/mol (246.9371 without restraints) Performing minimization step: 1492. Total energy = 246.7834 kcal/mol (246.7628 without restraints) Performing minimization step: 1493. Total energy = 246.6092 kcal/mol (246.5887 without restraints) Performing minimization step: 1494. Total energy = 246.4352 kcal/mol (246.4147 without restraints) Performing minimization step: 1495. Total energy = 246.2614 kcal/mol (246.2409 without restraints) Performing minimization step: 1496. Total energy = 246.0877 kcal/mol (246.0672 without restraints) Performing minimization step: 1497. Total energy = 245.9141 kcal/mol (245.8937 without restraints) Performing minimization step: 1498. Total energy = 245.7407 kcal/mol (245.7203 without restraints) Performing minimization step: 1499. Total energy = 245.5675 kcal/mol (245.5470 without restraints) Performing minimization step: 1500. Total energy = 245.3944 kcal/mol (245.3739 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 245.2214 kcal/mol (245.2010 without restraints) Performing minimization step: 1502. Total energy = 245.0486 kcal/mol (245.0282 without restraints) Performing minimization step: 1503. Total energy = 244.8759 kcal/mol (244.8555 without restraints) Performing minimization step: 1504. Total energy = 244.7033 kcal/mol (244.6830 without restraints) Performing minimization step: 1505. Total energy = 244.5309 kcal/mol (244.5106 without restraints) Performing minimization step: 1506. Total energy = 244.3587 kcal/mol (244.3384 without restraints) Performing minimization step: 1507. Total energy = 244.1866 kcal/mol (244.1663 without restraints) Performing minimization step: 1508. Total energy = 244.0146 kcal/mol (243.9943 without restraints) Performing minimization step: 1509. Total energy = 243.8428 kcal/mol (243.8225 without restraints) Performing minimization step: 1510. Total energy = 243.6711 kcal/mol (243.6509 without restraints) Performing minimization step: 1511. Total energy = 243.4996 kcal/mol (243.4794 without restraints) Performing minimization step: 1512. Total energy = 243.3282 kcal/mol (243.3080 without restraints) Performing minimization step: 1513. Total energy = 243.1570 kcal/mol (243.1367 without restraints) Performing minimization step: 1514. Total energy = 242.9858 kcal/mol (242.9657 without restraints) Performing minimization step: 1515. Total energy = 242.8149 kcal/mol (242.7947 without restraints) Performing minimization step: 1516. Total energy = 242.6441 kcal/mol (242.6239 without restraints) Performing minimization step: 1517. Total energy = 242.4734 kcal/mol (242.4532 without restraints) Performing minimization step: 1518. Total energy = 242.3028 kcal/mol (242.2827 without restraints) Performing minimization step: 1519. Total energy = 242.1324 kcal/mol (242.1123 without restraints) Performing minimization step: 1520. Total energy = 241.9622 kcal/mol (241.9421 without restraints) Performing minimization step: 1521. Total energy = 241.7920 kcal/mol (241.7720 without restraints) Performing minimization step: 1522. Total energy = 241.6221 kcal/mol (241.6020 without restraints) Performing minimization step: 1523. Total energy = 241.4522 kcal/mol (241.4322 without restraints) Performing minimization step: 1524. Total energy = 241.2825 kcal/mol (241.2625 without restraints) Performing minimization step: 1525. Total energy = 241.1130 kcal/mol (241.0930 without restraints) Performing minimization step: 1526. Total energy = 240.9436 kcal/mol (240.9236 without restraints) Performing minimization step: 1527. Total energy = 240.7743 kcal/mol (240.7543 without restraints) Performing minimization step: 1528. Total energy = 240.6051 kcal/mol (240.5852 without restraints) Performing minimization step: 1529. Total energy = 240.4361 kcal/mol (240.4162 without restraints) Performing minimization step: 1530. Total energy = 240.2673 kcal/mol (240.2473 without restraints) Performing minimization step: 1531. Total energy = 240.0985 kcal/mol (240.0786 without restraints) Performing minimization step: 1532. Total energy = 239.9300 kcal/mol (239.9101 without restraints) Performing minimization step: 1533. Total energy = 239.7615 kcal/mol (239.7416 without restraints) Performing minimization step: 1534. Total energy = 239.5932 kcal/mol (239.5733 without restraints) Performing minimization step: 1535. Total energy = 239.4250 kcal/mol (239.4052 without restraints) Performing minimization step: 1536. Total energy = 239.2570 kcal/mol (239.2372 without restraints) Performing minimization step: 1537. Total energy = 239.0891 kcal/mol (239.0693 without restraints) Performing minimization step: 1538. Total energy = 238.9213 kcal/mol (238.9015 without restraints) Performing minimization step: 1539. Total energy = 238.7537 kcal/mol (238.7339 without restraints) Performing minimization step: 1540. Total energy = 238.5862 kcal/mol (238.5665 without restraints) Performing minimization step: 1541. Total energy = 238.4189 kcal/mol (238.3991 without restraints) Performing minimization step: 1542. Total energy = 238.2517 kcal/mol (238.2319 without restraints) Performing minimization step: 1543. Total energy = 238.0846 kcal/mol (238.0649 without restraints) Performing minimization step: 1544. Total energy = 237.9176 kcal/mol (237.8979 without restraints) Performing minimization step: 1545. Total energy = 237.7508 kcal/mol (237.7312 without restraints) Performing minimization step: 1546. Total energy = 237.5842 kcal/mol (237.5645 without restraints) Performing minimization step: 1547. Total energy = 237.4176 kcal/mol (237.3980 without restraints) Performing minimization step: 1548. Total energy = 237.2512 kcal/mol (237.2316 without restraints) Performing minimization step: 1549. Total energy = 237.0850 kcal/mol (237.0654 without restraints) Performing minimization step: 1550. Total energy = 236.9189 kcal/mol (236.8993 without restraints) Performing minimization step: 1551. Total energy = 236.7529 kcal/mol (236.7333 without restraints) Performing minimization step: 1552. Total energy = 236.5870 kcal/mol (236.5674 without restraints) Performing minimization step: 1553. Total energy = 236.4213 kcal/mol (236.4017 without restraints) Performing minimization step: 1554. Total energy = 236.2557 kcal/mol (236.2362 without restraints) Performing minimization step: 1555. Total energy = 236.0902 kcal/mol (236.0707 without restraints) Performing minimization step: 1556. Total energy = 235.9249 kcal/mol (235.9054 without restraints) Performing minimization step: 1557. Total energy = 235.7597 kcal/mol (235.7402 without restraints) Performing minimization step: 1558. Total energy = 235.5947 kcal/mol (235.5752 without restraints) Performing minimization step: 1559. Total energy = 235.4298 kcal/mol (235.4103 without restraints) Performing minimization step: 1560. Total energy = 235.2650 kcal/mol (235.2455 without restraints) Performing minimization step: 1561. Total energy = 235.1003 kcal/mol (235.0809 without restraints) Performing minimization step: 1562. Total energy = 234.9358 kcal/mol (234.9164 without restraints) Performing minimization step: 1563. Total energy = 234.7714 kcal/mol (234.7520 without restraints) Performing minimization step: 1564. Total energy = 234.6071 kcal/mol (234.5878 without restraints) Performing minimization step: 1565. Total energy = 234.4430 kcal/mol (234.4237 without restraints) Performing minimization step: 1566. Total energy = 234.2790 kcal/mol (234.2597 without restraints) Performing minimization step: 1567. Total energy = 234.1152 kcal/mol (234.0958 without restraints) Performing minimization step: 1568. Total energy = 233.9514 kcal/mol (233.9321 without restraints) Performing minimization step: 1569. Total energy = 233.7878 kcal/mol (233.7685 without restraints) Performing minimization step: 1570. Total energy = 233.6244 kcal/mol (233.6051 without restraints) Performing minimization step: 1571. Total energy = 233.4610 kcal/mol (233.4418 without restraints) Performing minimization step: 1572. Total energy = 233.2978 kcal/mol (233.2786 without restraints) Performing minimization step: 1573. Total energy = 233.1348 kcal/mol (233.1155 without restraints) Performing minimization step: 1574. Total energy = 232.9718 kcal/mol (232.9526 without restraints) Performing minimization step: 1575. Total energy = 232.8090 kcal/mol (232.7898 without restraints) Performing minimization step: 1576. Total energy = 232.6463 kcal/mol (232.6271 without restraints) Performing minimization step: 1577. Total energy = 232.4838 kcal/mol (232.4646 without restraints) Performing minimization step: 1578. Total energy = 232.3214 kcal/mol (232.3022 without restraints) Performing minimization step: 1579. Total energy = 232.1591 kcal/mol (232.1399 without restraints) Performing minimization step: 1580. Total energy = 231.9969 kcal/mol (231.9778 without restraints) Performing minimization step: 1581. Total energy = 231.8349 kcal/mol (231.8158 without restraints) Performing minimization step: 1582. Total energy = 231.6730 kcal/mol (231.6539 without restraints) Performing minimization step: 1583. Total energy = 231.5112 kcal/mol (231.4921 without restraints) Performing minimization step: 1584. Total energy = 231.3496 kcal/mol (231.3305 without restraints) Performing minimization step: 1585. Total energy = 231.1881 kcal/mol (231.1690 without restraints) Performing minimization step: 1586. Total energy = 231.0267 kcal/mol (231.0076 without restraints) Performing minimization step: 1587. Total energy = 230.8654 kcal/mol (230.8464 without restraints) Performing minimization step: 1588. Total energy = 230.7043 kcal/mol (230.6853 without restraints) Performing minimization step: 1589. Total energy = 230.5433 kcal/mol (230.5243 without restraints) Performing minimization step: 1590. Total energy = 230.3824 kcal/mol (230.3634 without restraints) Performing minimization step: 1591. Total energy = 230.2217 kcal/mol (230.2027 without restraints) Performing minimization step: 1592. Total energy = 230.0611 kcal/mol (230.0421 without restraints) Performing minimization step: 1593. Total energy = 229.9006 kcal/mol (229.8816 without restraints) Performing minimization step: 1594. Total energy = 229.7402 kcal/mol (229.7213 without restraints) Performing minimization step: 1595. Total energy = 229.5800 kcal/mol (229.5611 without restraints) Performing minimization step: 1596. Total energy = 229.4199 kcal/mol (229.4010 without restraints) Performing minimization step: 1597. Total energy = 229.2599 kcal/mol (229.2410 without restraints) Performing minimization step: 1598. Total energy = 229.1000 kcal/mol (229.0812 without restraints) Performing minimization step: 1599. Total energy = 228.9403 kcal/mol (228.9215 without restraints) Performing minimization step: 1600. Total energy = 228.7807 kcal/mol (228.7619 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 228.6212 kcal/mol (228.6024 without restraints) Performing minimization step: 1602. Total energy = 228.4619 kcal/mol (228.4431 without restraints) Performing minimization step: 1603. Total energy = 228.3027 kcal/mol (228.2839 without restraints) Performing minimization step: 1604. Total energy = 228.1436 kcal/mol (228.1248 without restraints) Performing minimization step: 1605. Total energy = 227.9846 kcal/mol (227.9658 without restraints) Performing minimization step: 1606. Total energy = 227.8257 kcal/mol (227.8070 without restraints) Performing minimization step: 1607. Total energy = 227.6670 kcal/mol (227.6483 without restraints) Performing minimization step: 1608. Total energy = 227.5084 kcal/mol (227.4897 without restraints) Performing minimization step: 1609. Total energy = 227.3500 kcal/mol (227.3313 without restraints) Performing minimization step: 1610. Total energy = 227.1916 kcal/mol (227.1729 without restraints) Performing minimization step: 1611. Total energy = 227.0334 kcal/mol (227.0147 without restraints) Performing minimization step: 1612. Total energy = 226.8753 kcal/mol (226.8567 without restraints) Performing minimization step: 1613. Total energy = 226.7173 kcal/mol (226.6987 without restraints) Performing minimization step: 1614. Total energy = 226.5595 kcal/mol (226.5409 without restraints) Performing minimization step: 1615. Total energy = 226.4018 kcal/mol (226.3832 without restraints) Performing minimization step: 1616. Total energy = 226.2442 kcal/mol (226.2256 without restraints) Performing minimization step: 1617. Total energy = 226.0867 kcal/mol (226.0681 without restraints) Performing minimization step: 1618. Total energy = 225.9293 kcal/mol (225.9108 without restraints) Performing minimization step: 1619. Total energy = 225.7721 kcal/mol (225.7536 without restraints) Performing minimization step: 1620. Total energy = 225.6150 kcal/mol (225.5965 without restraints) Performing minimization step: 1621. Total energy = 225.4580 kcal/mol (225.4395 without restraints) Performing minimization step: 1622. Total energy = 225.3012 kcal/mol (225.2827 without restraints) Performing minimization step: 1623. Total energy = 225.1444 kcal/mol (225.1260 without restraints) Performing minimization step: 1624. Total energy = 224.9878 kcal/mol (224.9694 without restraints) Performing minimization step: 1625. Total energy = 224.8313 kcal/mol (224.8129 without restraints) Performing minimization step: 1626. Total energy = 224.6750 kcal/mol (224.6565 without restraints) Performing minimization step: 1627. Total energy = 224.5187 kcal/mol (224.5003 without restraints) Performing minimization step: 1628. Total energy = 224.3626 kcal/mol (224.3442 without restraints) Performing minimization step: 1629. Total energy = 224.2066 kcal/mol (224.1882 without restraints) Performing minimization step: 1630. Total energy = 224.0507 kcal/mol (224.0323 without restraints) Performing minimization step: 1631. Total energy = 223.8950 kcal/mol (223.8766 without restraints) Performing minimization step: 1632. Total energy = 223.7394 kcal/mol (223.7210 without restraints) Performing minimization step: 1633. Total energy = 223.5838 kcal/mol (223.5655 without restraints) Performing minimization step: 1634. Total energy = 223.4285 kcal/mol (223.4101 without restraints) Performing minimization step: 1635. Total energy = 223.2732 kcal/mol (223.2549 without restraints) Performing minimization step: 1636. Total energy = 223.1180 kcal/mol (223.0997 without restraints) Performing minimization step: 1637. Total energy = 222.9630 kcal/mol (222.9447 without restraints) Performing minimization step: 1638. Total energy = 222.8081 kcal/mol (222.7898 without restraints) Performing minimization step: 1639. Total energy = 222.6533 kcal/mol (222.6351 without restraints) Performing minimization step: 1640. Total energy = 222.4986 kcal/mol (222.4804 without restraints) Performing minimization step: 1641. Total energy = 222.3441 kcal/mol (222.3259 without restraints) Performing minimization step: 1642. Total energy = 222.1897 kcal/mol (222.1715 without restraints) Performing minimization step: 1643. Total energy = 222.0354 kcal/mol (222.0172 without restraints) Performing minimization step: 1644. Total energy = 221.8812 kcal/mol (221.8630 without restraints) Performing minimization step: 1645. Total energy = 221.7271 kcal/mol (221.7090 without restraints) Performing minimization step: 1646. Total energy = 221.5732 kcal/mol (221.5550 without restraints) Performing minimization step: 1647. Total energy = 221.4194 kcal/mol (221.4012 without restraints) Performing minimization step: 1648. Total energy = 221.2657 kcal/mol (221.2475 without restraints) Performing minimization step: 1649. Total energy = 221.1121 kcal/mol (221.0939 without restraints) Performing minimization step: 1650. Total energy = 220.9586 kcal/mol (220.9405 without restraints) Performing minimization step: 1651. Total energy = 220.8053 kcal/mol (220.7872 without restraints) Performing minimization step: 1652. Total energy = 220.6520 kcal/mol (220.6339 without restraints) Performing minimization step: 1653. Total energy = 220.4989 kcal/mol (220.4808 without restraints) Performing minimization step: 1654. Total energy = 220.3459 kcal/mol (220.3279 without restraints) Performing minimization step: 1655. Total energy = 220.1931 kcal/mol (220.1750 without restraints) Performing minimization step: 1656. Total energy = 220.0403 kcal/mol (220.0223 without restraints) Performing minimization step: 1657. Total energy = 219.8877 kcal/mol (219.8697 without restraints) Performing minimization step: 1658. Total energy = 219.7351 kcal/mol (219.7171 without restraints) Performing minimization step: 1659. Total energy = 219.5827 kcal/mol (219.5648 without restraints) Performing minimization step: 1660. Total energy = 219.4305 kcal/mol (219.4125 without restraints) Performing minimization step: 1661. Total energy = 219.2783 kcal/mol (219.2603 without restraints) Performing minimization step: 1662. Total energy = 219.1262 kcal/mol (219.1083 without restraints) Performing minimization step: 1663. Total energy = 218.9743 kcal/mol (218.9564 without restraints) Performing minimization step: 1664. Total energy = 218.8225 kcal/mol (218.8046 without restraints) Performing minimization step: 1665. Total energy = 218.6708 kcal/mol (218.6529 without restraints) Performing minimization step: 1666. Total energy = 218.5192 kcal/mol (218.5014 without restraints) Performing minimization step: 1667. Total energy = 218.3678 kcal/mol (218.3499 without restraints) Performing minimization step: 1668. Total energy = 218.2164 kcal/mol (218.1986 without restraints) Performing minimization step: 1669. Total energy = 218.0652 kcal/mol (218.0474 without restraints) Performing minimization step: 1670. Total energy = 217.9141 kcal/mol (217.8963 without restraints) Performing minimization step: 1671. Total energy = 217.7631 kcal/mol (217.7453 without restraints) Performing minimization step: 1672. Total energy = 217.6122 kcal/mol (217.5944 without restraints) Performing minimization step: 1673. Total energy = 217.4615 kcal/mol (217.4437 without restraints) Performing minimization step: 1674. Total energy = 217.3108 kcal/mol (217.2930 without restraints) Performing minimization step: 1675. Total energy = 217.1603 kcal/mol (217.1425 without restraints) Performing minimization step: 1676. Total energy = 217.0099 kcal/mol (216.9921 without restraints) Performing minimization step: 1677. Total energy = 216.8596 kcal/mol (216.8418 without restraints) Performing minimization step: 1678. Total energy = 216.7094 kcal/mol (216.6917 without restraints) Performing minimization step: 1679. Total energy = 216.5593 kcal/mol (216.5416 without restraints) Performing minimization step: 1680. Total energy = 216.4094 kcal/mol (216.3917 without restraints) Performing minimization step: 1681. Total energy = 216.2595 kcal/mol (216.2419 without restraints) Performing minimization step: 1682. Total energy = 216.1098 kcal/mol (216.0922 without restraints) Performing minimization step: 1683. Total energy = 215.9602 kcal/mol (215.9426 without restraints) Performing minimization step: 1684. Total energy = 215.8107 kcal/mol (215.7931 without restraints) Performing minimization step: 1685. Total energy = 215.6614 kcal/mol (215.6437 without restraints) Performing minimization step: 1686. Total energy = 215.5121 kcal/mol (215.4945 without restraints) Performing minimization step: 1687. Total energy = 215.3629 kcal/mol (215.3454 without restraints) Performing minimization step: 1688. Total energy = 215.2139 kcal/mol (215.1963 without restraints) Performing minimization step: 1689. Total energy = 215.0650 kcal/mol (215.0474 without restraints) Performing minimization step: 1690. Total energy = 214.9162 kcal/mol (214.8986 without restraints) Performing minimization step: 1691. Total energy = 214.7675 kcal/mol (214.7500 without restraints) Performing minimization step: 1692. Total energy = 214.6189 kcal/mol (214.6014 without restraints) Performing minimization step: 1693. Total energy = 214.4705 kcal/mol (214.4530 without restraints) Performing minimization step: 1694. Total energy = 214.3221 kcal/mol (214.3046 without restraints) Performing minimization step: 1695. Total energy = 214.1739 kcal/mol (214.1564 without restraints) Performing minimization step: 1696. Total energy = 214.0258 kcal/mol (214.0083 without restraints) Performing minimization step: 1697. Total energy = 213.8778 kcal/mol (213.8603 without restraints) Performing minimization step: 1698. Total energy = 213.7299 kcal/mol (213.7124 without restraints) Performing minimization step: 1699. Total energy = 213.5821 kcal/mol (213.5647 without restraints) Performing minimization step: 1700. Total energy = 213.4344 kcal/mol (213.4170 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 213.2869 kcal/mol (213.2695 without restraints) Performing minimization step: 1702. Total energy = 213.1394 kcal/mol (213.1220 without restraints) Performing minimization step: 1703. Total energy = 212.9921 kcal/mol (212.9747 without restraints) Performing minimization step: 1704. Total energy = 212.8449 kcal/mol (212.8275 without restraints) Performing minimization step: 1705. Total energy = 212.6978 kcal/mol (212.6804 without restraints) Performing minimization step: 1706. Total energy = 212.5508 kcal/mol (212.5334 without restraints) Performing minimization step: 1707. Total energy = 212.4039 kcal/mol (212.3866 without restraints) Performing minimization step: 1708. Total energy = 212.2571 kcal/mol (212.2398 without restraints) Performing minimization step: 1709. Total energy = 212.1105 kcal/mol (212.0932 without restraints) Performing minimization step: 1710. Total energy = 211.9639 kcal/mol (211.9466 without restraints) Performing minimization step: 1711. Total energy = 211.8175 kcal/mol (211.8002 without restraints) Performing minimization step: 1712. Total energy = 211.6712 kcal/mol (211.6539 without restraints) Performing minimization step: 1713. Total energy = 211.5250 kcal/mol (211.5077 without restraints) Performing minimization step: 1714. Total energy = 211.3789 kcal/mol (211.3616 without restraints) Performing minimization step: 1715. Total energy = 211.2329 kcal/mol (211.2157 without restraints) Performing minimization step: 1716. Total energy = 211.0870 kcal/mol (211.0698 without restraints) Performing minimization step: 1717. Total energy = 210.9413 kcal/mol (210.9241 without restraints) Performing minimization step: 1718. Total energy = 210.7956 kcal/mol (210.7784 without restraints) Performing minimization step: 1719. Total energy = 210.6501 kcal/mol (210.6329 without restraints) Performing minimization step: 1720. Total energy = 210.5046 kcal/mol (210.4875 without restraints) Performing minimization step: 1721. Total energy = 210.3593 kcal/mol (210.3422 without restraints) Performing minimization step: 1722. Total energy = 210.2141 kcal/mol (210.1970 without restraints) Performing minimization step: 1723. Total energy = 210.0690 kcal/mol (210.0519 without restraints) Performing minimization step: 1724. Total energy = 209.9240 kcal/mol (209.9069 without restraints) Performing minimization step: 1725. Total energy = 209.7792 kcal/mol (209.7621 without restraints) Performing minimization step: 1726. Total energy = 209.6344 kcal/mol (209.6173 without restraints) Performing minimization step: 1727. Total energy = 209.4897 kcal/mol (209.4727 without restraints) Performing minimization step: 1728. Total energy = 209.3452 kcal/mol (209.3281 without restraints) Performing minimization step: 1729. Total energy = 209.2008 kcal/mol (209.1837 without restraints) Performing minimization step: 1730. Total energy = 209.0564 kcal/mol (209.0394 without restraints) Performing minimization step: 1731. Total energy = 208.9122 kcal/mol (208.8952 without restraints) Performing minimization step: 1732. Total energy = 208.7681 kcal/mol (208.7511 without restraints) Performing minimization step: 1733. Total energy = 208.6241 kcal/mol (208.6071 without restraints) Performing minimization step: 1734. Total energy = 208.4802 kcal/mol (208.4632 without restraints) Performing minimization step: 1735. Total energy = 208.3364 kcal/mol (208.3195 without restraints) Performing minimization step: 1736. Total energy = 208.1928 kcal/mol (208.1758 without restraints) Performing minimization step: 1737. Total energy = 208.0492 kcal/mol (208.0323 without restraints) Performing minimization step: 1738. Total energy = 207.9058 kcal/mol (207.8888 without restraints) Performing minimization step: 1739. Total energy = 207.7624 kcal/mol (207.7455 without restraints) Performing minimization step: 1740. Total energy = 207.6192 kcal/mol (207.6023 without restraints) Performing minimization step: 1741. Total energy = 207.4761 kcal/mol (207.4592 without restraints) Performing minimization step: 1742. Total energy = 207.3331 kcal/mol (207.3162 without restraints) Performing minimization step: 1743. Total energy = 207.1902 kcal/mol (207.1733 without restraints) Performing minimization step: 1744. Total energy = 207.0474 kcal/mol (207.0305 without restraints) Performing minimization step: 1745. Total energy = 206.9047 kcal/mol (206.8878 without restraints) Performing minimization step: 1746. Total energy = 206.7621 kcal/mol (206.7453 without restraints) Performing minimization step: 1747. Total energy = 206.6196 kcal/mol (206.6028 without restraints) Performing minimization step: 1748. Total energy = 206.4772 kcal/mol (206.4604 without restraints) Performing minimization step: 1749. Total energy = 206.3350 kcal/mol (206.3182 without restraints) Performing minimization step: 1750. Total energy = 206.1928 kcal/mol (206.1761 without restraints) Performing minimization step: 1751. Total energy = 206.0508 kcal/mol (206.0340 without restraints) Performing minimization step: 1752. Total energy = 205.9089 kcal/mol (205.8921 without restraints) Performing minimization step: 1753. Total energy = 205.7670 kcal/mol (205.7503 without restraints) Performing minimization step: 1754. Total energy = 205.6253 kcal/mol (205.6086 without restraints) Performing minimization step: 1755. Total energy = 205.4837 kcal/mol (205.4670 without restraints) Performing minimization step: 1756. Total energy = 205.3422 kcal/mol (205.3255 without restraints) Performing minimization step: 1757. Total energy = 205.2008 kcal/mol (205.1841 without restraints) Performing minimization step: 1758. Total energy = 205.0595 kcal/mol (205.0429 without restraints) Performing minimization step: 1759. Total energy = 204.9183 kcal/mol (204.9017 without restraints) Performing minimization step: 1760. Total energy = 204.7773 kcal/mol (204.7606 without restraints) Performing minimization step: 1761. Total energy = 204.6363 kcal/mol (204.6197 without restraints) Performing minimization step: 1762. Total energy = 204.4954 kcal/mol (204.4788 without restraints) Performing minimization step: 1763. Total energy = 204.3547 kcal/mol (204.3381 without restraints) Performing minimization step: 1764. Total energy = 204.2140 kcal/mol (204.1974 without restraints) Performing minimization step: 1765. Total energy = 204.0735 kcal/mol (204.0569 without restraints) Performing minimization step: 1766. Total energy = 203.9331 kcal/mol (203.9165 without restraints) Performing minimization step: 1767. Total energy = 203.7927 kcal/mol (203.7762 without restraints) Performing minimization step: 1768. Total energy = 203.6525 kcal/mol (203.6360 without restraints) Performing minimization step: 1769. Total energy = 203.5124 kcal/mol (203.4959 without restraints) Performing minimization step: 1770. Total energy = 203.3724 kcal/mol (203.3559 without restraints) Performing minimization step: 1771. Total energy = 203.2325 kcal/mol (203.2160 without restraints) Performing minimization step: 1772. Total energy = 203.0927 kcal/mol (203.0762 without restraints) Performing minimization step: 1773. Total energy = 202.9530 kcal/mol (202.9365 without restraints) Performing minimization step: 1774. Total energy = 202.8134 kcal/mol (202.7970 without restraints) Performing minimization step: 1775. Total energy = 202.6739 kcal/mol (202.6575 without restraints) Performing minimization step: 1776. Total energy = 202.5346 kcal/mol (202.5181 without restraints) Performing minimization step: 1777. Total energy = 202.3953 kcal/mol (202.3789 without restraints) Performing minimization step: 1778. Total energy = 202.2561 kcal/mol (202.2397 without restraints) Performing minimization step: 1779. Total energy = 202.1171 kcal/mol (202.1007 without restraints) Performing minimization step: 1780. Total energy = 201.9781 kcal/mol (201.9617 without restraints) Performing minimization step: 1781. Total energy = 201.8393 kcal/mol (201.8229 without restraints) Performing minimization step: 1782. Total energy = 201.7005 kcal/mol (201.6842 without restraints) Performing minimization step: 1783. Total energy = 201.5619 kcal/mol (201.5455 without restraints) Performing minimization step: 1784. Total energy = 201.4234 kcal/mol (201.4070 without restraints) Performing minimization step: 1785. Total energy = 201.2849 kcal/mol (201.2686 without restraints) Performing minimization step: 1786. Total energy = 201.1466 kcal/mol (201.1303 without restraints) Performing minimization step: 1787. Total energy = 201.0084 kcal/mol (200.9921 without restraints) Performing minimization step: 1788. Total energy = 200.8703 kcal/mol (200.8540 without restraints) Performing minimization step: 1789. Total energy = 200.7323 kcal/mol (200.7160 without restraints) Performing minimization step: 1790. Total energy = 200.5944 kcal/mol (200.5781 without restraints) Performing minimization step: 1791. Total energy = 200.4566 kcal/mol (200.4403 without restraints) Performing minimization step: 1792. Total energy = 200.3189 kcal/mol (200.3027 without restraints) Performing minimization step: 1793. Total energy = 200.1813 kcal/mol (200.1651 without restraints) Performing minimization step: 1794. Total energy = 200.0438 kcal/mol (200.0276 without restraints) Performing minimization step: 1795. Total energy = 199.9064 kcal/mol (199.8902 without restraints) Performing minimization step: 1796. Total energy = 199.7692 kcal/mol (199.7530 without restraints) Performing minimization step: 1797. Total energy = 199.6320 kcal/mol (199.6158 without restraints) Performing minimization step: 1798. Total energy = 199.4949 kcal/mol (199.4787 without restraints) Performing minimization step: 1799. Total energy = 199.3580 kcal/mol (199.3418 without restraints) Performing minimization step: 1800. Total energy = 199.2211 kcal/mol (199.2049 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 199.0843 kcal/mol (199.0682 without restraints) Performing minimization step: 1802. Total energy = 198.9477 kcal/mol (198.9316 without restraints) Performing minimization step: 1803. Total energy = 198.8111 kcal/mol (198.7950 without restraints) Performing minimization step: 1804. Total energy = 198.6747 kcal/mol (198.6586 without restraints) Performing minimization step: 1805. Total energy = 198.5383 kcal/mol (198.5222 without restraints) Performing minimization step: 1806. Total energy = 198.4021 kcal/mol (198.3860 without restraints) Performing minimization step: 1807. Total energy = 198.2660 kcal/mol (198.2499 without restraints) Performing minimization step: 1808. Total energy = 198.1299 kcal/mol (198.1139 without restraints) Performing minimization step: 1809. Total energy = 197.9940 kcal/mol (197.9780 without restraints) Performing minimization step: 1810. Total energy = 197.8582 kcal/mol (197.8421 without restraints) Performing minimization step: 1811. Total energy = 197.7224 kcal/mol (197.7064 without restraints) Performing minimization step: 1812. Total energy = 197.5868 kcal/mol (197.5708 without restraints) Performing minimization step: 1813. Total energy = 197.4513 kcal/mol (197.4353 without restraints) Performing minimization step: 1814. Total energy = 197.3159 kcal/mol (197.2999 without restraints) Performing minimization step: 1815. Total energy = 197.1806 kcal/mol (197.1646 without restraints) Performing minimization step: 1816. Total energy = 197.0454 kcal/mol (197.0294 without restraints) Performing minimization step: 1817. Total energy = 196.9102 kcal/mol (196.8943 without restraints) Performing minimization step: 1818. Total energy = 196.7752 kcal/mol (196.7593 without restraints) Performing minimization step: 1819. Total energy = 196.6403 kcal/mol (196.6244 without restraints) Performing minimization step: 1820. Total energy = 196.5055 kcal/mol (196.4896 without restraints) Performing minimization step: 1821. Total energy = 196.3708 kcal/mol (196.3549 without restraints) Performing minimization step: 1822. Total energy = 196.2362 kcal/mol (196.2203 without restraints) Performing minimization step: 1823. Total energy = 196.1017 kcal/mol (196.0859 without restraints) Performing minimization step: 1824. Total energy = 195.9673 kcal/mol (195.9515 without restraints) Performing minimization step: 1825. Total energy = 195.8330 kcal/mol (195.8172 without restraints) Performing minimization step: 1826. Total energy = 195.6989 kcal/mol (195.6830 without restraints) Performing minimization step: 1827. Total energy = 195.5648 kcal/mol (195.5490 without restraints) Performing minimization step: 1828. Total energy = 195.4308 kcal/mol (195.4150 without restraints) Performing minimization step: 1829. Total energy = 195.2969 kcal/mol (195.2811 without restraints) Performing minimization step: 1830. Total energy = 195.1631 kcal/mol (195.1473 without restraints) Performing minimization step: 1831. Total energy = 195.0294 kcal/mol (195.0137 without restraints) Performing minimization step: 1832. Total energy = 194.8959 kcal/mol (194.8801 without restraints) Performing minimization step: 1833. Total energy = 194.7624 kcal/mol (194.7466 without restraints) Performing minimization step: 1834. Total energy = 194.6290 kcal/mol (194.6133 without restraints) Performing minimization step: 1835. Total energy = 194.4957 kcal/mol (194.4800 without restraints) Performing minimization step: 1836. Total energy = 194.3626 kcal/mol (194.3468 without restraints) Performing minimization step: 1837. Total energy = 194.2295 kcal/mol (194.2138 without restraints) Performing minimization step: 1838. Total energy = 194.0965 kcal/mol (194.0808 without restraints) Performing minimization step: 1839. Total energy = 193.9636 kcal/mol (193.9480 without restraints) Performing minimization step: 1840. Total energy = 193.8309 kcal/mol (193.8152 without restraints) Performing minimization step: 1841. Total energy = 193.6982 kcal/mol (193.6825 without restraints) Performing minimization step: 1842. Total energy = 193.5656 kcal/mol (193.5500 without restraints) Performing minimization step: 1843. Total energy = 193.4332 kcal/mol (193.4175 without restraints) Performing minimization step: 1844. Total energy = 193.3008 kcal/mol (193.2852 without restraints) Performing minimization step: 1845. Total energy = 193.1685 kcal/mol (193.1529 without restraints) Performing minimization step: 1846. Total energy = 193.0364 kcal/mol (193.0208 without restraints) Performing minimization step: 1847. Total energy = 192.9043 kcal/mol (192.8887 without restraints) Performing minimization step: 1848. Total energy = 192.7723 kcal/mol (192.7568 without restraints) Performing minimization step: 1849. Total energy = 192.6405 kcal/mol (192.6249 without restraints) Performing minimization step: 1850. Total energy = 192.5087 kcal/mol (192.4932 without restraints) Performing minimization step: 1851. Total energy = 192.3770 kcal/mol (192.3615 without restraints) Performing minimization step: 1852. Total energy = 192.2455 kcal/mol (192.2300 without restraints) Performing minimization step: 1853. Total energy = 192.1140 kcal/mol (192.0985 without restraints) Performing minimization step: 1854. Total energy = 191.9826 kcal/mol (191.9671 without restraints) Performing minimization step: 1855. Total energy = 191.8514 kcal/mol (191.8359 without restraints) Performing minimization step: 1856. Total energy = 191.7202 kcal/mol (191.7047 without restraints) Performing minimization step: 1857. Total energy = 191.5892 kcal/mol (191.5737 without restraints) Performing minimization step: 1858. Total energy = 191.4582 kcal/mol (191.4427 without restraints) Performing minimization step: 1859. Total energy = 191.3273 kcal/mol (191.3119 without restraints) Performing minimization step: 1860. Total energy = 191.1966 kcal/mol (191.1811 without restraints) Performing minimization step: 1861. Total energy = 191.0659 kcal/mol (191.0505 without restraints) Performing minimization step: 1862. Total energy = 190.9353 kcal/mol (190.9199 without restraints) Performing minimization step: 1863. Total energy = 190.8049 kcal/mol (190.7895 without restraints) Performing minimization step: 1864. Total energy = 190.6745 kcal/mol (190.6591 without restraints) Performing minimization step: 1865. Total energy = 190.5442 kcal/mol (190.5289 without restraints) Performing minimization step: 1866. Total energy = 190.4141 kcal/mol (190.3987 without restraints) Performing minimization step: 1867. Total energy = 190.2840 kcal/mol (190.2687 without restraints) Performing minimization step: 1868. Total energy = 190.1540 kcal/mol (190.1387 without restraints) Performing minimization step: 1869. Total energy = 190.0242 kcal/mol (190.0089 without restraints) Performing minimization step: 1870. Total energy = 189.8944 kcal/mol (189.8791 without restraints) Performing minimization step: 1871. Total energy = 189.7647 kcal/mol (189.7494 without restraints) Performing minimization step: 1872. Total energy = 189.6352 kcal/mol (189.6199 without restraints) Performing minimization step: 1873. Total energy = 189.5057 kcal/mol (189.4904 without restraints) Performing minimization step: 1874. Total energy = 189.3763 kcal/mol (189.3611 without restraints) Performing minimization step: 1875. Total energy = 189.2471 kcal/mol (189.2318 without restraints) Performing minimization step: 1876. Total energy = 189.1179 kcal/mol (189.1026 without restraints) Performing minimization step: 1877. Total energy = 188.9888 kcal/mol (188.9736 without restraints) Performing minimization step: 1878. Total energy = 188.8598 kcal/mol (188.8446 without restraints) Performing minimization step: 1879. Total energy = 188.7309 kcal/mol (188.7157 without restraints) Performing minimization step: 1880. Total energy = 188.6022 kcal/mol (188.5870 without restraints) Performing minimization step: 1881. Total energy = 188.4735 kcal/mol (188.4583 without restraints) Performing minimization step: 1882. Total energy = 188.3449 kcal/mol (188.3297 without restraints) Performing minimization step: 1883. Total energy = 188.2164 kcal/mol (188.2013 without restraints) Performing minimization step: 1884. Total energy = 188.0880 kcal/mol (188.0729 without restraints) Performing minimization step: 1885. Total energy = 187.9598 kcal/mol (187.9446 without restraints) Performing minimization step: 1886. Total energy = 187.8316 kcal/mol (187.8164 without restraints) Performing minimization step: 1887. Total energy = 187.7035 kcal/mol (187.6884 without restraints) Performing minimization step: 1888. Total energy = 187.5755 kcal/mol (187.5604 without restraints) Performing minimization step: 1889. Total energy = 187.4476 kcal/mol (187.4325 without restraints) Performing minimization step: 1890. Total energy = 187.3198 kcal/mol (187.3047 without restraints) Performing minimization step: 1891. Total energy = 187.1921 kcal/mol (187.1770 without restraints) Performing minimization step: 1892. Total energy = 187.0645 kcal/mol (187.0494 without restraints) Performing minimization step: 1893. Total energy = 186.9370 kcal/mol (186.9220 without restraints) Performing minimization step: 1894. Total energy = 186.8096 kcal/mol (186.7946 without restraints) Performing minimization step: 1895. Total energy = 186.6823 kcal/mol (186.6673 without restraints) Performing minimization step: 1896. Total energy = 186.5551 kcal/mol (186.5401 without restraints) Performing minimization step: 1897. Total energy = 186.4280 kcal/mol (186.4130 without restraints) Performing minimization step: 1898. Total energy = 186.3010 kcal/mol (186.2860 without restraints) Performing minimization step: 1899. Total energy = 186.1740 kcal/mol (186.1591 without restraints) Performing minimization step: 1900. Total energy = 186.0472 kcal/mol (186.0323 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 185.9205 kcal/mol (185.9056 without restraints) Performing minimization step: 1902. Total energy = 185.7939 kcal/mol (185.7790 without restraints) Performing minimization step: 1903. Total energy = 185.6674 kcal/mol (185.6524 without restraints) Performing minimization step: 1904. Total energy = 185.5409 kcal/mol (185.5260 without restraints) Performing minimization step: 1905. Total energy = 185.4146 kcal/mol (185.3997 without restraints) Performing minimization step: 1906. Total energy = 185.2884 kcal/mol (185.2735 without restraints) Performing minimization step: 1907. Total energy = 185.1623 kcal/mol (185.1474 without restraints) Performing minimization step: 1908. Total energy = 185.0362 kcal/mol (185.0213 without restraints) Performing minimization step: 1909. Total energy = 184.9103 kcal/mol (184.8954 without restraints) Performing minimization step: 1910. Total energy = 184.7844 kcal/mol (184.7696 without restraints) Performing minimization step: 1911. Total energy = 184.6587 kcal/mol (184.6439 without restraints) Performing minimization step: 1912. Total energy = 184.5330 kcal/mol (184.5182 without restraints) Performing minimization step: 1913. Total energy = 184.4075 kcal/mol (184.3927 without restraints) Performing minimization step: 1914. Total energy = 184.2820 kcal/mol (184.2672 without restraints) Performing minimization step: 1915. Total energy = 184.1567 kcal/mol (184.1419 without restraints) Performing minimization step: 1916. Total energy = 184.0314 kcal/mol (184.0166 without restraints) Performing minimization step: 1917. Total energy = 183.9063 kcal/mol (183.8915 without restraints) Performing minimization step: 1918. Total energy = 183.7812 kcal/mol (183.7664 without restraints) Performing minimization step: 1919. Total energy = 183.6562 kcal/mol (183.6415 without restraints) Performing minimization step: 1920. Total energy = 183.5314 kcal/mol (183.5166 without restraints) Performing minimization step: 1921. Total energy = 183.4066 kcal/mol (183.3919 without restraints) Performing minimization step: 1922. Total energy = 183.2819 kcal/mol (183.2672 without restraints) Performing minimization step: 1923. Total energy = 183.1573 kcal/mol (183.1426 without restraints) Performing minimization step: 1924. Total energy = 183.0328 kcal/mol (183.0182 without restraints) Performing minimization step: 1925. Total energy = 182.9085 kcal/mol (182.8938 without restraints) Performing minimization step: 1926. Total energy = 182.7842 kcal/mol (182.7695 without restraints) Performing minimization step: 1927. Total energy = 182.6600 kcal/mol (182.6453 without restraints) Performing minimization step: 1928. Total energy = 182.5359 kcal/mol (182.5212 without restraints) Performing minimization step: 1929. Total energy = 182.4119 kcal/mol (182.3972 without restraints) Performing minimization step: 1930. Total energy = 182.2880 kcal/mol (182.2733 without restraints) Performing minimization step: 1931. Total energy = 182.1641 kcal/mol (182.1495 without restraints) Performing minimization step: 1932. Total energy = 182.0404 kcal/mol (182.0258 without restraints) Performing minimization step: 1933. Total energy = 181.9168 kcal/mol (181.9022 without restraints) Performing minimization step: 1934. Total energy = 181.7933 kcal/mol (181.7787 without restraints) Performing minimization step: 1935. Total energy = 181.6699 kcal/mol (181.6553 without restraints) Performing minimization step: 1936. Total energy = 181.5465 kcal/mol (181.5320 without restraints) Performing minimization step: 1937. Total energy = 181.4233 kcal/mol (181.4088 without restraints) Performing minimization step: 1938. Total energy = 181.3002 kcal/mol (181.2857 without restraints) Performing minimization step: 1939. Total energy = 181.1771 kcal/mol (181.1626 without restraints) Performing minimization step: 1940. Total energy = 181.0542 kcal/mol (181.0397 without restraints) Performing minimization step: 1941. Total energy = 180.9313 kcal/mol (180.9169 without restraints) Performing minimization step: 1942. Total energy = 180.8086 kcal/mol (180.7941 without restraints) Performing minimization step: 1943. Total energy = 180.6859 kcal/mol (180.6715 without restraints) Performing minimization step: 1944. Total energy = 180.5634 kcal/mol (180.5489 without restraints) Performing minimization step: 1945. Total energy = 180.4409 kcal/mol (180.4265 without restraints) Performing minimization step: 1946. Total energy = 180.3185 kcal/mol (180.3041 without restraints) Performing minimization step: 1947. Total energy = 180.1963 kcal/mol (180.1818 without restraints) Performing minimization step: 1948. Total energy = 180.0741 kcal/mol (180.0597 without restraints) Performing minimization step: 1949. Total energy = 179.9520 kcal/mol (179.9376 without restraints) Performing minimization step: 1950. Total energy = 179.8300 kcal/mol (179.8156 without restraints) Performing minimization step: 1951. Total energy = 179.7081 kcal/mol (179.6938 without restraints) Performing minimization step: 1952. Total energy = 179.5863 kcal/mol (179.5720 without restraints) Performing minimization step: 1953. Total energy = 179.4646 kcal/mol (179.4503 without restraints) Performing minimization step: 1954. Total energy = 179.3430 kcal/mol (179.3287 without restraints) Performing minimization step: 1955. Total energy = 179.2215 kcal/mol (179.2072 without restraints) Performing minimization step: 1956. Total energy = 179.1001 kcal/mol (179.0858 without restraints) Performing minimization step: 1957. Total energy = 178.9788 kcal/mol (178.9645 without restraints) Performing minimization step: 1958. Total energy = 178.8576 kcal/mol (178.8433 without restraints) Performing minimization step: 1959. Total energy = 178.7365 kcal/mol (178.7222 without restraints) Performing minimization step: 1960. Total energy = 178.6154 kcal/mol (178.6011 without restraints) Performing minimization step: 1961. Total energy = 178.4945 kcal/mol (178.4802 without restraints) Performing minimization step: 1962. Total energy = 178.3736 kcal/mol (178.3594 without restraints) Performing minimization step: 1963. Total energy = 178.2529 kcal/mol (178.2387 without restraints) Performing minimization step: 1964. Total energy = 178.1323 kcal/mol (178.1180 without restraints) Performing minimization step: 1965. Total energy = 178.0117 kcal/mol (177.9975 without restraints) Performing minimization step: 1966. Total energy = 177.8912 kcal/mol (177.8770 without restraints) Performing minimization step: 1967. Total energy = 177.7709 kcal/mol (177.7567 without restraints) Performing minimization step: 1968. Total energy = 177.6506 kcal/mol (177.6364 without restraints) Performing minimization step: 1969. Total energy = 177.5304 kcal/mol (177.5162 without restraints) Performing minimization step: 1970. Total energy = 177.4103 kcal/mol (177.3962 without restraints) Performing minimization step: 1971. Total energy = 177.2904 kcal/mol (177.2762 without restraints) Performing minimization step: 1972. Total energy = 177.1705 kcal/mol (177.1563 without restraints) Performing minimization step: 1973. Total energy = 177.0507 kcal/mol (177.0365 without restraints) Performing minimization step: 1974. Total energy = 176.9310 kcal/mol (176.9169 without restraints) Performing minimization step: 1975. Total energy = 176.8114 kcal/mol (176.7973 without restraints) Performing minimization step: 1976. Total energy = 176.6919 kcal/mol (176.6778 without restraints) Performing minimization step: 1977. Total energy = 176.5724 kcal/mol (176.5584 without restraints) Performing minimization step: 1978. Total energy = 176.4531 kcal/mol (176.4390 without restraints) Performing minimization step: 1979. Total energy = 176.3339 kcal/mol (176.3198 without restraints) Performing minimization step: 1980. Total energy = 176.2148 kcal/mol (176.2007 without restraints) Performing minimization step: 1981. Total energy = 176.0957 kcal/mol (176.0817 without restraints) Performing minimization step: 1982. Total energy = 175.9768 kcal/mol (175.9627 without restraints) Performing minimization step: 1983. Total energy = 175.8579 kcal/mol (175.8439 without restraints) Performing minimization step: 1984. Total energy = 175.7392 kcal/mol (175.7252 without restraints) Performing minimization step: 1985. Total energy = 175.6205 kcal/mol (175.6065 without restraints) Performing minimization step: 1986. Total energy = 175.5020 kcal/mol (175.4880 without restraints) Performing minimization step: 1987. Total energy = 175.3835 kcal/mol (175.3695 without restraints) Performing minimization step: 1988. Total energy = 175.2651 kcal/mol (175.2511 without restraints) Performing minimization step: 1989. Total energy = 175.1468 kcal/mol (175.1329 without restraints) Performing minimization step: 1990. Total energy = 175.0286 kcal/mol (175.0147 without restraints) Performing minimization step: 1991. Total energy = 174.9105 kcal/mol (174.8966 without restraints) Performing minimization step: 1992. Total energy = 174.7925 kcal/mol (174.7786 without restraints) Performing minimization step: 1993. Total energy = 174.6746 kcal/mol (174.6607 without restraints) Performing minimization step: 1994. Total energy = 174.5568 kcal/mol (174.5429 without restraints) Performing minimization step: 1995. Total energy = 174.4391 kcal/mol (174.4252 without restraints) Performing minimization step: 1996. Total energy = 174.3215 kcal/mol (174.3076 without restraints) Performing minimization step: 1997. Total energy = 174.2040 kcal/mol (174.1901 without restraints) Performing minimization step: 1998. Total energy = 174.0865 kcal/mol (174.0727 without restraints) Performing minimization step: 1999. Total energy = 173.9692 kcal/mol (173.9553 without restraints) Performing minimization step: 2000. Total energy = 173.8519 kcal/mol (173.8381 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 173.7348 kcal/mol (173.7210 without restraints) Performing minimization step: 2002. Total energy = 173.6177 kcal/mol (173.6039 without restraints) Performing minimization step: 2003. Total energy = 173.5008 kcal/mol (173.4870 without restraints) Performing minimization step: 2004. Total energy = 173.3839 kcal/mol (173.3701 without restraints) Performing minimization step: 2005. Total energy = 173.2671 kcal/mol (173.2533 without restraints) Performing minimization step: 2006. Total energy = 173.1504 kcal/mol (173.1367 without restraints) Performing minimization step: 2007. Total energy = 173.0339 kcal/mol (173.0201 without restraints) Performing minimization step: 2008. Total energy = 172.9174 kcal/mol (172.9036 without restraints) Performing minimization step: 2009. Total energy = 172.8010 kcal/mol (172.7872 without restraints) Performing minimization step: 2010. Total energy = 172.6847 kcal/mol (172.6709 without restraints) Performing minimization step: 2011. Total energy = 172.5684 kcal/mol (172.5547 without restraints) Performing minimization step: 2012. Total energy = 172.4523 kcal/mol (172.4386 without restraints) Performing minimization step: 2013. Total energy = 172.3363 kcal/mol (172.3226 without restraints) Performing minimization step: 2014. Total energy = 172.2204 kcal/mol (172.2067 without restraints) Performing minimization step: 2015. Total energy = 172.1045 kcal/mol (172.0909 without restraints) Performing minimization step: 2016. Total energy = 171.9888 kcal/mol (171.9751 without restraints) Performing minimization step: 2017. Total energy = 171.8731 kcal/mol (171.8595 without restraints) Performing minimization step: 2018. Total energy = 171.7576 kcal/mol (171.7439 without restraints) Performing minimization step: 2019. Total energy = 171.6421 kcal/mol (171.6285 without restraints) Performing minimization step: 2020. Total energy = 171.5267 kcal/mol (171.5131 without restraints) Performing minimization step: 2021. Total energy = 171.4115 kcal/mol (171.3979 without restraints) Performing minimization step: 2022. Total energy = 171.2963 kcal/mol (171.2827 without restraints) Performing minimization step: 2023. Total energy = 171.1812 kcal/mol (171.1676 without restraints) Performing minimization step: 2024. Total energy = 171.0662 kcal/mol (171.0526 without restraints) Performing minimization step: 2025. Total energy = 170.9513 kcal/mol (170.9377 without restraints) Performing minimization step: 2026. Total energy = 170.8365 kcal/mol (170.8229 without restraints) Performing minimization step: 2027. Total energy = 170.7218 kcal/mol (170.7082 without restraints) Performing minimization step: 2028. Total energy = 170.6071 kcal/mol (170.5936 without restraints) Performing minimization step: 2029. Total energy = 170.4926 kcal/mol (170.4791 without restraints) Performing minimization step: 2030. Total energy = 170.3782 kcal/mol (170.3647 without restraints) Performing minimization step: 2031. Total energy = 170.2638 kcal/mol (170.2503 without restraints) Performing minimization step: 2032. Total energy = 170.1496 kcal/mol (170.1361 without restraints) Performing minimization step: 2033. Total energy = 170.0354 kcal/mol (170.0220 without restraints) Performing minimization step: 2034. Total energy = 169.9214 kcal/mol (169.9079 without restraints) Performing minimization step: 2035. Total energy = 169.8074 kcal/mol (169.7939 without restraints) Performing minimization step: 2036. Total energy = 169.6935 kcal/mol (169.6801 without restraints) Performing minimization step: 2037. Total energy = 169.5797 kcal/mol (169.5663 without restraints) Performing minimization step: 2038. Total energy = 169.4660 kcal/mol (169.4526 without restraints) Performing minimization step: 2039. Total energy = 169.3524 kcal/mol (169.3390 without restraints) Performing minimization step: 2040. Total energy = 169.2389 kcal/mol (169.2255 without restraints) Performing minimization step: 2041. Total energy = 169.1255 kcal/mol (169.1121 without restraints) Performing minimization step: 2042. Total energy = 169.0122 kcal/mol (168.9988 without restraints) Performing minimization step: 2043. Total energy = 168.8990 kcal/mol (168.8856 without restraints) Performing minimization step: 2044. Total energy = 168.7858 kcal/mol (168.7725 without restraints) Performing minimization step: 2045. Total energy = 168.6728 kcal/mol (168.6595 without restraints) Performing minimization step: 2046. Total energy = 168.5599 kcal/mol (168.5465 without restraints) Performing minimization step: 2047. Total energy = 168.4470 kcal/mol (168.4337 without restraints) Performing minimization step: 2048. Total energy = 168.3343 kcal/mol (168.3210 without restraints) Performing minimization step: 2049. Total energy = 168.2216 kcal/mol (168.2083 without restraints) Performing minimization step: 2050. Total energy = 168.1090 kcal/mol (168.0958 without restraints) Performing minimization step: 2051. Total energy = 167.9966 kcal/mol (167.9833 without restraints) Performing minimization step: 2052. Total energy = 167.8842 kcal/mol (167.8709 without restraints) Performing minimization step: 2053. Total energy = 167.7719 kcal/mol (167.7586 without restraints) Performing minimization step: 2054. Total energy = 167.6597 kcal/mol (167.6464 without restraints) Performing minimization step: 2055. Total energy = 167.5476 kcal/mol (167.5343 without restraints) Performing minimization step: 2056. Total energy = 167.4355 kcal/mol (167.4223 without restraints) Performing minimization step: 2057. Total energy = 167.3236 kcal/mol (167.3104 without restraints) Performing minimization step: 2058. Total energy = 167.2118 kcal/mol (167.1986 without restraints) Performing minimization step: 2059. Total energy = 167.1000 kcal/mol (167.0868 without restraints) Performing minimization step: 2060. Total energy = 166.9884 kcal/mol (166.9752 without restraints) Performing minimization step: 2061. Total energy = 166.8768 kcal/mol (166.8637 without restraints) Performing minimization step: 2062. Total energy = 166.7654 kcal/mol (166.7522 without restraints) Performing minimization step: 2063. Total energy = 166.6540 kcal/mol (166.6409 without restraints) Performing minimization step: 2064. Total energy = 166.5427 kcal/mol (166.5296 without restraints) Performing minimization step: 2065. Total energy = 166.4315 kcal/mol (166.4184 without restraints) Performing minimization step: 2066. Total energy = 166.3204 kcal/mol (166.3073 without restraints) Performing minimization step: 2067. Total energy = 166.2094 kcal/mol (166.1963 without restraints) Performing minimization step: 2068. Total energy = 166.0985 kcal/mol (166.0854 without restraints) Performing minimization step: 2069. Total energy = 165.9877 kcal/mol (165.9746 without restraints) Performing minimization step: 2070. Total energy = 165.8770 kcal/mol (165.8639 without restraints) Performing minimization step: 2071. Total energy = 165.7664 kcal/mol (165.7533 without restraints) Performing minimization step: 2072. Total energy = 165.6558 kcal/mol (165.6428 without restraints) Performing minimization step: 2073. Total energy = 165.5454 kcal/mol (165.5323 without restraints) Performing minimization step: 2074. Total energy = 165.4350 kcal/mol (165.4220 without restraints) Performing minimization step: 2075. Total energy = 165.3248 kcal/mol (165.3117 without restraints) Performing minimization step: 2076. Total energy = 165.2146 kcal/mol (165.2016 without restraints) Performing minimization step: 2077. Total energy = 165.1045 kcal/mol (165.0915 without restraints) Performing minimization step: 2078. Total energy = 164.9945 kcal/mol (164.9815 without restraints) Performing minimization step: 2079. Total energy = 164.8846 kcal/mol (164.8717 without restraints) Performing minimization step: 2080. Total energy = 164.7748 kcal/mol (164.7619 without restraints) Performing minimization step: 2081. Total energy = 164.6651 kcal/mol (164.6522 without restraints) Performing minimization step: 2082. Total energy = 164.5555 kcal/mol (164.5426 without restraints) Performing minimization step: 2083. Total energy = 164.4460 kcal/mol (164.4331 without restraints) Performing minimization step: 2084. Total energy = 164.3365 kcal/mol (164.3236 without restraints) Performing minimization step: 2085. Total energy = 164.2272 kcal/mol (164.2143 without restraints) Performing minimization step: 2086. Total energy = 164.1180 kcal/mol (164.1051 without restraints) Performing minimization step: 2087. Total energy = 164.0088 kcal/mol (163.9959 without restraints) Performing minimization step: 2088. Total energy = 163.8997 kcal/mol (163.8869 without restraints) Performing minimization step: 2089. Total energy = 163.7908 kcal/mol (163.7779 without restraints) Performing minimization step: 2090. Total energy = 163.6819 kcal/mol (163.6690 without restraints) Performing minimization step: 2091. Total energy = 163.5731 kcal/mol (163.5603 without restraints) Performing minimization step: 2092. Total energy = 163.4644 kcal/mol (163.4516 without restraints) Performing minimization step: 2093. Total energy = 163.3558 kcal/mol (163.3430 without restraints) Performing minimization step: 2094. Total energy = 163.2473 kcal/mol (163.2345 without restraints) Performing minimization step: 2095. Total energy = 163.1389 kcal/mol (163.1261 without restraints) Performing minimization step: 2096. Total energy = 163.0305 kcal/mol (163.0177 without restraints) Performing minimization step: 2097. Total energy = 162.9223 kcal/mol (162.9095 without restraints) Performing minimization step: 2098. Total energy = 162.8141 kcal/mol (162.8014 without restraints) Performing minimization step: 2099. Total energy = 162.7061 kcal/mol (162.6933 without restraints) Performing minimization step: 2100. Total energy = 162.5981 kcal/mol (162.5854 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 162.4903 kcal/mol (162.4775 without restraints) Performing minimization step: 2102. Total energy = 162.3825 kcal/mol (162.3698 without restraints) Performing minimization step: 2103. Total energy = 162.2748 kcal/mol (162.2621 without restraints) Performing minimization step: 2104. Total energy = 162.1672 kcal/mol (162.1545 without restraints) Performing minimization step: 2105. Total energy = 162.0597 kcal/mol (162.0470 without restraints) Performing minimization step: 2106. Total energy = 161.9523 kcal/mol (161.9396 without restraints) Performing minimization step: 2107. Total energy = 161.8450 kcal/mol (161.8323 without restraints) Performing minimization step: 2108. Total energy = 161.7377 kcal/mol (161.7251 without restraints) Performing minimization step: 2109. Total energy = 161.6306 kcal/mol (161.6180 without restraints) Performing minimization step: 2110. Total energy = 161.5236 kcal/mol (161.5109 without restraints) Performing minimization step: 2111. Total energy = 161.4166 kcal/mol (161.4040 without restraints) Performing minimization step: 2112. Total energy = 161.3097 kcal/mol (161.2971 without restraints) Performing minimization step: 2113. Total energy = 161.2030 kcal/mol (161.1904 without restraints) Performing minimization step: 2114. Total energy = 161.0963 kcal/mol (161.0837 without restraints) Performing minimization step: 2115. Total energy = 160.9897 kcal/mol (160.9771 without restraints) Performing minimization step: 2116. Total energy = 160.8832 kcal/mol (160.8706 without restraints) Performing minimization step: 2117. Total energy = 160.7768 kcal/mol (160.7643 without restraints) Performing minimization step: 2118. Total energy = 160.6705 kcal/mol (160.6580 without restraints) Performing minimization step: 2119. Total energy = 160.5643 kcal/mol (160.5517 without restraints) Performing minimization step: 2120. Total energy = 160.4581 kcal/mol (160.4456 without restraints) Performing minimization step: 2121. Total energy = 160.3521 kcal/mol (160.3396 without restraints) Performing minimization step: 2122. Total energy = 160.2462 kcal/mol (160.2337 without restraints) Performing minimization step: 2123. Total energy = 160.1403 kcal/mol (160.1278 without restraints) Performing minimization step: 2124. Total energy = 160.0345 kcal/mol (160.0221 without restraints) Performing minimization step: 2125. Total energy = 159.9289 kcal/mol (159.9164 without restraints) Performing minimization step: 2126. Total energy = 159.8233 kcal/mol (159.8108 without restraints) Performing minimization step: 2127. Total energy = 159.7178 kcal/mol (159.7053 without restraints) Performing minimization step: 2128. Total energy = 159.6124 kcal/mol (159.6000 without restraints) Performing minimization step: 2129. Total energy = 159.5071 kcal/mol (159.4947 without restraints) Performing minimization step: 2130. Total energy = 159.4019 kcal/mol (159.3895 without restraints) Performing minimization step: 2131. Total energy = 159.2967 kcal/mol (159.2843 without restraints) Performing minimization step: 2132. Total energy = 159.1917 kcal/mol (159.1793 without restraints) Performing minimization step: 2133. Total energy = 159.0868 kcal/mol (159.0744 without restraints) Performing minimization step: 2134. Total energy = 158.9819 kcal/mol (158.9695 without restraints) Performing minimization step: 2135. Total energy = 158.8772 kcal/mol (158.8648 without restraints) Performing minimization step: 2136. Total energy = 158.7725 kcal/mol (158.7601 without restraints) Performing minimization step: 2137. Total energy = 158.6679 kcal/mol (158.6556 without restraints) Performing minimization step: 2138. Total energy = 158.5634 kcal/mol (158.5511 without restraints) Performing minimization step: 2139. Total energy = 158.4590 kcal/mol (158.4467 without restraints) Performing minimization step: 2140. Total energy = 158.3547 kcal/mol (158.3424 without restraints) Performing minimization step: 2141. Total energy = 158.2505 kcal/mol (158.2382 without restraints) Performing minimization step: 2142. Total energy = 158.1464 kcal/mol (158.1341 without restraints) Performing minimization step: 2143. Total energy = 158.0423 kcal/mol (158.0301 without restraints) Performing minimization step: 2144. Total energy = 157.9384 kcal/mol (157.9261 without restraints) Performing minimization step: 2145. Total energy = 157.8346 kcal/mol (157.8223 without restraints) Performing minimization step: 2146. Total energy = 157.7308 kcal/mol (157.7186 without restraints) Performing minimization step: 2147. Total energy = 157.6271 kcal/mol (157.6149 without restraints) Performing minimization step: 2148. Total energy = 157.5236 kcal/mol (157.5113 without restraints) Performing minimization step: 2149. Total energy = 157.4201 kcal/mol (157.4079 without restraints) Performing minimization step: 2150. Total energy = 157.3167 kcal/mol (157.3045 without restraints) Performing minimization step: 2151. Total energy = 157.2134 kcal/mol (157.2012 without restraints) Performing minimization step: 2152. Total energy = 157.1101 kcal/mol (157.0980 without restraints) Performing minimization step: 2153. Total energy = 157.0070 kcal/mol (156.9949 without restraints) Performing minimization step: 2154. Total energy = 156.9040 kcal/mol (156.8918 without restraints) Performing minimization step: 2155. Total energy = 156.8011 kcal/mol (156.7889 without restraints) Performing minimization step: 2156. Total energy = 156.6982 kcal/mol (156.6861 without restraints) Performing minimization step: 2157. Total energy = 156.5954 kcal/mol (156.5833 without restraints) Performing minimization step: 2158. Total energy = 156.4928 kcal/mol (156.4807 without restraints) Performing minimization step: 2159. Total energy = 156.3902 kcal/mol (156.3781 without restraints) Performing minimization step: 2160. Total energy = 156.2877 kcal/mol (156.2756 without restraints) Performing minimization step: 2161. Total energy = 156.1853 kcal/mol (156.1732 without restraints) Performing minimization step: 2162. Total energy = 156.0830 kcal/mol (156.0709 without restraints) Performing minimization step: 2163. Total energy = 155.9808 kcal/mol (155.9687 without restraints) Performing minimization step: 2164. Total energy = 155.8787 kcal/mol (155.8666 without restraints) Performing minimization step: 2165. Total energy = 155.7766 kcal/mol (155.7646 without restraints) Performing minimization step: 2166. Total energy = 155.6747 kcal/mol (155.6626 without restraints) Performing minimization step: 2167. Total energy = 155.5728 kcal/mol (155.5608 without restraints) Performing minimization step: 2168. Total energy = 155.4711 kcal/mol (155.4590 without restraints) Performing minimization step: 2169. Total energy = 155.3694 kcal/mol (155.3574 without restraints) Performing minimization step: 2170. Total energy = 155.2678 kcal/mol (155.2558 without restraints) Performing minimization step: 2171. Total energy = 155.1663 kcal/mol (155.1543 without restraints) Performing minimization step: 2172. Total energy = 155.0649 kcal/mol (155.0529 without restraints) Performing minimization step: 2173. Total energy = 154.9636 kcal/mol (154.9516 without restraints) Performing minimization step: 2174. Total energy = 154.8624 kcal/mol (154.8504 without restraints) Performing minimization step: 2175. Total energy = 154.7612 kcal/mol (154.7493 without restraints) Performing minimization step: 2176. Total energy = 154.6602 kcal/mol (154.6483 without restraints) Performing minimization step: 2177. Total energy = 154.5593 kcal/mol (154.5473 without restraints) Performing minimization step: 2178. Total energy = 154.4584 kcal/mol (154.4465 without restraints) Performing minimization step: 2179. Total energy = 154.3576 kcal/mol (154.3457 without restraints) Performing minimization step: 2180. Total energy = 154.2569 kcal/mol (154.2451 without restraints) Performing minimization step: 2181. Total energy = 154.1564 kcal/mol (154.1445 without restraints) Performing minimization step: 2182. Total energy = 154.0559 kcal/mol (154.0440 without restraints) Performing minimization step: 2183. Total energy = 153.9554 kcal/mol (153.9436 without restraints) Performing minimization step: 2184. Total energy = 153.8551 kcal/mol (153.8433 without restraints) Performing minimization step: 2185. Total energy = 153.7549 kcal/mol (153.7431 without restraints) Performing minimization step: 2186. Total energy = 153.6548 kcal/mol (153.6429 without restraints) Performing minimization step: 2187. Total energy = 153.5547 kcal/mol (153.5429 without restraints) Performing minimization step: 2188. Total energy = 153.4548 kcal/mol (153.4430 without restraints) Performing minimization step: 2189. Total energy = 153.3549 kcal/mol (153.3431 without restraints) Performing minimization step: 2190. Total energy = 153.2551 kcal/mol (153.2434 without restraints) Performing minimization step: 2191. Total energy = 153.1555 kcal/mol (153.1437 without restraints) Performing minimization step: 2192. Total energy = 153.0559 kcal/mol (153.0441 without restraints) Performing minimization step: 2193. Total energy = 152.9564 kcal/mol (152.9446 without restraints) Performing minimization step: 2194. Total energy = 152.8569 kcal/mol (152.8452 without restraints) Performing minimization step: 2195. Total energy = 152.7576 kcal/mol (152.7459 without restraints) Performing minimization step: 2196. Total energy = 152.6584 kcal/mol (152.6467 without restraints) Performing minimization step: 2197. Total energy = 152.5592 kcal/mol (152.5475 without restraints) Performing minimization step: 2198. Total energy = 152.4602 kcal/mol (152.4485 without restraints) Performing minimization step: 2199. Total energy = 152.3612 kcal/mol (152.3495 without restraints) Performing minimization step: 2200. Total energy = 152.2623 kcal/mol (152.2507 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 152.1635 kcal/mol (152.1519 without restraints) Performing minimization step: 2202. Total energy = 152.0648 kcal/mol (152.0532 without restraints) Performing minimization step: 2203. Total energy = 151.9662 kcal/mol (151.9546 without restraints) Performing minimization step: 2204. Total energy = 151.8677 kcal/mol (151.8561 without restraints) Performing minimization step: 2205. Total energy = 151.7693 kcal/mol (151.7577 without restraints) Performing minimization step: 2206. Total energy = 151.6709 kcal/mol (151.6593 without restraints) Performing minimization step: 2207. Total energy = 151.5727 kcal/mol (151.5611 without restraints) Performing minimization step: 2208. Total energy = 151.4745 kcal/mol (151.4630 without restraints) Performing minimization step: 2209. Total energy = 151.3765 kcal/mol (151.3649 without restraints) Performing minimization step: 2210. Total energy = 151.2785 kcal/mol (151.2669 without restraints) Performing minimization step: 2211. Total energy = 151.1806 kcal/mol (151.1690 without restraints) Performing minimization step: 2212. Total energy = 151.0828 kcal/mol (151.0713 without restraints) Performing minimization step: 2213. Total energy = 150.9851 kcal/mol (150.9736 without restraints) Performing minimization step: 2214. Total energy = 150.8875 kcal/mol (150.8759 without restraints) Performing minimization step: 2215. Total energy = 150.7899 kcal/mol (150.7784 without restraints) Performing minimization step: 2216. Total energy = 150.6925 kcal/mol (150.6810 without restraints) Performing minimization step: 2217. Total energy = 150.5951 kcal/mol (150.5836 without restraints) Performing minimization step: 2218. Total energy = 150.4979 kcal/mol (150.4864 without restraints) Performing minimization step: 2219. Total energy = 150.4007 kcal/mol (150.3892 without restraints) Performing minimization step: 2220. Total energy = 150.3036 kcal/mol (150.2922 without restraints) Performing minimization step: 2221. Total energy = 150.2066 kcal/mol (150.1952 without restraints) Performing minimization step: 2222. Total energy = 150.1097 kcal/mol (150.0983 without restraints) Performing minimization step: 2223. Total energy = 150.0129 kcal/mol (150.0015 without restraints) Performing minimization step: 2224. Total energy = 149.9162 kcal/mol (149.9047 without restraints) Performing minimization step: 2225. Total energy = 149.8195 kcal/mol (149.8081 without restraints) Performing minimization step: 2226. Total energy = 149.7230 kcal/mol (149.7116 without restraints) Performing minimization step: 2227. Total energy = 149.6265 kcal/mol (149.6151 without restraints) Performing minimization step: 2228. Total energy = 149.5301 kcal/mol (149.5188 without restraints) Performing minimization step: 2229. Total energy = 149.4339 kcal/mol (149.4225 without restraints) Performing minimization step: 2230. Total energy = 149.3377 kcal/mol (149.3263 without restraints) Performing minimization step: 2231. Total energy = 149.2416 kcal/mol (149.2302 without restraints) Performing minimization step: 2232. Total energy = 149.1455 kcal/mol (149.1342 without restraints) Performing minimization step: 2233. Total energy = 149.0496 kcal/mol (149.0383 without restraints) Performing minimization step: 2234. Total energy = 148.9538 kcal/mol (148.9425 without restraints) Performing minimization step: 2235. Total energy = 148.8580 kcal/mol (148.8467 without restraints) Performing minimization step: 2236. Total energy = 148.7624 kcal/mol (148.7511 without restraints) Performing minimization step: 2237. Total energy = 148.6668 kcal/mol (148.6555 without restraints) Performing minimization step: 2238. Total energy = 148.5713 kcal/mol (148.5601 without restraints) Performing minimization step: 2239. Total energy = 148.4759 kcal/mol (148.4647 without restraints) Performing minimization step: 2240. Total energy = 148.3806 kcal/mol (148.3694 without restraints) Performing minimization step: 2241. Total energy = 148.2854 kcal/mol (148.2742 without restraints) Performing minimization step: 2242. Total energy = 148.1903 kcal/mol (148.1791 without restraints) Performing minimization step: 2243. Total energy = 148.0953 kcal/mol (148.0841 without restraints) Performing minimization step: 2244. Total energy = 148.0003 kcal/mol (147.9891 without restraints) Performing minimization step: 2245. Total energy = 147.9055 kcal/mol (147.8943 without restraints) Performing minimization step: 2246. Total energy = 147.8107 kcal/mol (147.7995 without restraints) Performing minimization step: 2247. Total energy = 147.7160 kcal/mol (147.7049 without restraints) Performing minimization step: 2248. Total energy = 147.6214 kcal/mol (147.6103 without restraints) Performing minimization step: 2249. Total energy = 147.5269 kcal/mol (147.5158 without restraints) Performing minimization step: 2250. Total energy = 147.4325 kcal/mol (147.4214 without restraints) Performing minimization step: 2251. Total energy = 147.3382 kcal/mol (147.3271 without restraints) Performing minimization step: 2252. Total energy = 147.2440 kcal/mol (147.2328 without restraints) Performing minimization step: 2253. Total energy = 147.1498 kcal/mol (147.1387 without restraints) Performing minimization step: 2254. Total energy = 147.0557 kcal/mol (147.0447 without restraints) Performing minimization step: 2255. Total energy = 146.9618 kcal/mol (146.9507 without restraints) Performing minimization step: 2256. Total energy = 146.8679 kcal/mol (146.8568 without restraints) Performing minimization step: 2257. Total energy = 146.7741 kcal/mol (146.7630 without restraints) Performing minimization step: 2258. Total energy = 146.6804 kcal/mol (146.6693 without restraints) Performing minimization step: 2259. Total energy = 146.5868 kcal/mol (146.5757 without restraints) Performing minimization step: 2260. Total energy = 146.4933 kcal/mol (146.4822 without restraints) Performing minimization step: 2261. Total energy = 146.3998 kcal/mol (146.3888 without restraints) Performing minimization step: 2262. Total energy = 146.3065 kcal/mol (146.2955 without restraints) Performing minimization step: 2263. Total energy = 146.2132 kcal/mol (146.2022 without restraints) Performing minimization step: 2264. Total energy = 146.1200 kcal/mol (146.1090 without restraints) Performing minimization step: 2265. Total energy = 146.0269 kcal/mol (146.0160 without restraints) Performing minimization step: 2266. Total energy = 145.9339 kcal/mol (145.9230 without restraints) Performing minimization step: 2267. Total energy = 145.8410 kcal/mol (145.8301 without restraints) Performing minimization step: 2268. Total energy = 145.7482 kcal/mol (145.7373 without restraints) Performing minimization step: 2269. Total energy = 145.6555 kcal/mol (145.6445 without restraints) Performing minimization step: 2270. Total energy = 145.5628 kcal/mol (145.5519 without restraints) Performing minimization step: 2271. Total energy = 145.4703 kcal/mol (145.4594 without restraints) Performing minimization step: 2272. Total energy = 145.3778 kcal/mol (145.3669 without restraints) Performing minimization step: 2273. Total energy = 145.2854 kcal/mol (145.2745 without restraints) Performing minimization step: 2274. Total energy = 145.1931 kcal/mol (145.1823 without restraints) Performing minimization step: 2275. Total energy = 145.1009 kcal/mol (145.0901 without restraints) Performing minimization step: 2276. Total energy = 145.0088 kcal/mol (144.9980 without restraints) Performing minimization step: 2277. Total energy = 144.9168 kcal/mol (144.9059 without restraints) Performing minimization step: 2278. Total energy = 144.8249 kcal/mol (144.8140 without restraints) Performing minimization step: 2279. Total energy = 144.7330 kcal/mol (144.7222 without restraints) Performing minimization step: 2280. Total energy = 144.6412 kcal/mol (144.6304 without restraints) Performing minimization step: 2281. Total energy = 144.5496 kcal/mol (144.5388 without restraints) Performing minimization step: 2282. Total energy = 144.4580 kcal/mol (144.4472 without restraints) Performing minimization step: 2283. Total energy = 144.3665 kcal/mol (144.3557 without restraints) Performing minimization step: 2284. Total energy = 144.2751 kcal/mol (144.2643 without restraints) Performing minimization step: 2285. Total energy = 144.1837 kcal/mol (144.1730 without restraints) Performing minimization step: 2286. Total energy = 144.0925 kcal/mol (144.0817 without restraints) Performing minimization step: 2287. Total energy = 144.0014 kcal/mol (143.9906 without restraints) Performing minimization step: 2288. Total energy = 143.9103 kcal/mol (143.8995 without restraints) Performing minimization step: 2289. Total energy = 143.8193 kcal/mol (143.8086 without restraints) Performing minimization step: 2290. Total energy = 143.7284 kcal/mol (143.7177 without restraints) Performing minimization step: 2291. Total energy = 143.6376 kcal/mol (143.6269 without restraints) Performing minimization step: 2292. Total energy = 143.5469 kcal/mol (143.5362 without restraints) Performing minimization step: 2293. Total energy = 143.4563 kcal/mol (143.4456 without restraints) Performing minimization step: 2294. Total energy = 143.3658 kcal/mol (143.3551 without restraints) Performing minimization step: 2295. Total energy = 143.2753 kcal/mol (143.2646 without restraints) Performing minimization step: 2296. Total energy = 143.1849 kcal/mol (143.1743 without restraints) Performing minimization step: 2297. Total energy = 143.0947 kcal/mol (143.0840 without restraints) Performing minimization step: 2298. Total energy = 143.0045 kcal/mol (142.9938 without restraints) Performing minimization step: 2299. Total energy = 142.9144 kcal/mol (142.9038 without restraints) Performing minimization step: 2300. Total energy = 142.8244 kcal/mol (142.8138 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 142.7345 kcal/mol (142.7238 without restraints) Performing minimization step: 2302. Total energy = 142.6446 kcal/mol (142.6340 without restraints) Performing minimization step: 2303. Total energy = 142.5549 kcal/mol (142.5443 without restraints) Performing minimization step: 2304. Total energy = 142.4652 kcal/mol (142.4546 without restraints) Performing minimization step: 2305. Total energy = 142.3756 kcal/mol (142.3651 without restraints) Performing minimization step: 2306. Total energy = 142.2861 kcal/mol (142.2756 without restraints) Performing minimization step: 2307. Total energy = 142.1967 kcal/mol (142.1862 without restraints) Performing minimization step: 2308. Total energy = 142.1074 kcal/mol (142.0969 without restraints) Performing minimization step: 2309. Total energy = 142.0182 kcal/mol (142.0077 without restraints) Performing minimization step: 2310. Total energy = 141.9291 kcal/mol (141.9185 without restraints) Performing minimization step: 2311. Total energy = 141.8400 kcal/mol (141.8295 without restraints) Performing minimization step: 2312. Total energy = 141.7510 kcal/mol (141.7405 without restraints) Performing minimization step: 2313. Total energy = 141.6622 kcal/mol (141.6517 without restraints) Performing minimization step: 2314. Total energy = 141.5734 kcal/mol (141.5629 without restraints) Performing minimization step: 2315. Total energy = 141.4847 kcal/mol (141.4742 without restraints) Performing minimization step: 2316. Total energy = 141.3960 kcal/mol (141.3856 without restraints) Performing minimization step: 2317. Total energy = 141.3075 kcal/mol (141.2971 without restraints) Performing minimization step: 2318. Total energy = 141.2191 kcal/mol (141.2086 without restraints) Performing minimization step: 2319. Total energy = 141.1307 kcal/mol (141.1203 without restraints) Performing minimization step: 2320. Total energy = 141.0424 kcal/mol (141.0320 without restraints) Performing minimization step: 2321. Total energy = 140.9542 kcal/mol (140.9438 without restraints) Performing minimization step: 2322. Total energy = 140.8661 kcal/mol (140.8557 without restraints) Performing minimization step: 2323. Total energy = 140.7781 kcal/mol (140.7677 without restraints) Performing minimization step: 2324. Total energy = 140.6902 kcal/mol (140.6798 without restraints) Performing minimization step: 2325. Total energy = 140.6024 kcal/mol (140.5920 without restraints) Performing minimization step: 2326. Total energy = 140.5146 kcal/mol (140.5043 without restraints) Performing minimization step: 2327. Total energy = 140.4269 kcal/mol (140.4166 without restraints) Performing minimization step: 2328. Total energy = 140.3394 kcal/mol (140.3290 without restraints) Performing minimization step: 2329. Total energy = 140.2519 kcal/mol (140.2415 without restraints) Performing minimization step: 2330. Total energy = 140.1645 kcal/mol (140.1541 without restraints) Performing minimization step: 2331. Total energy = 140.0771 kcal/mol (140.0668 without restraints) Performing minimization step: 2332. Total energy = 139.9899 kcal/mol (139.9796 without restraints) Performing minimization step: 2333. Total energy = 139.9027 kcal/mol (139.8925 without restraints) Performing minimization step: 2334. Total energy = 139.8157 kcal/mol (139.8054 without restraints) Performing minimization step: 2335. Total energy = 139.7287 kcal/mol (139.7184 without restraints) Performing minimization step: 2336. Total energy = 139.6418 kcal/mol (139.6316 without restraints) Performing minimization step: 2337. Total energy = 139.5550 kcal/mol (139.5448 without restraints) Performing minimization step: 2338. Total energy = 139.4683 kcal/mol (139.4581 without restraints) Performing minimization step: 2339. Total energy = 139.3817 kcal/mol (139.3714 without restraints) Performing minimization step: 2340. Total energy = 139.2951 kcal/mol (139.2849 without restraints) Performing minimization step: 2341. Total energy = 139.2086 kcal/mol (139.1984 without restraints) Performing minimization step: 2342. Total energy = 139.1223 kcal/mol (139.1121 without restraints) Performing minimization step: 2343. Total energy = 139.0360 kcal/mol (139.0258 without restraints) Performing minimization step: 2344. Total energy = 138.9498 kcal/mol (138.9396 without restraints) Performing minimization step: 2345. Total energy = 138.8637 kcal/mol (138.8535 without restraints) Performing minimization step: 2346. Total energy = 138.7776 kcal/mol (138.7675 without restraints) Performing minimization step: 2347. Total energy = 138.6917 kcal/mol (138.6815 without restraints) Performing minimization step: 2348. Total energy = 138.6058 kcal/mol (138.5957 without restraints) Performing minimization step: 2349. Total energy = 138.5200 kcal/mol (138.5099 without restraints) Performing minimization step: 2350. Total energy = 138.4344 kcal/mol (138.4242 without restraints) Performing minimization step: 2351. Total energy = 138.3488 kcal/mol (138.3387 without restraints) Performing minimization step: 2352. Total energy = 138.2632 kcal/mol (138.2531 without restraints) Performing minimization step: 2353. Total energy = 138.1778 kcal/mol (138.1677 without restraints) Performing minimization step: 2354. Total energy = 138.0925 kcal/mol (138.0824 without restraints) Performing minimization step: 2355. Total energy = 138.0072 kcal/mol (137.9971 without restraints) Performing minimization step: 2356. Total energy = 137.9220 kcal/mol (137.9120 without restraints) Performing minimization step: 2357. Total energy = 137.8369 kcal/mol (137.8269 without restraints) Performing minimization step: 2358. Total energy = 137.7519 kcal/mol (137.7419 without restraints) Performing minimization step: 2359. Total energy = 137.6670 kcal/mol (137.6570 without restraints) Performing minimization step: 2360. Total energy = 137.5822 kcal/mol (137.5721 without restraints) Performing minimization step: 2361. Total energy = 137.4974 kcal/mol (137.4874 without restraints) Performing minimization step: 2362. Total energy = 137.4127 kcal/mol (137.4028 without restraints) Performing minimization step: 2363. Total energy = 137.3282 kcal/mol (137.3182 without restraints) Performing minimization step: 2364. Total energy = 137.2437 kcal/mol (137.2337 without restraints) Performing minimization step: 2365. Total energy = 137.1593 kcal/mol (137.1493 without restraints) Performing minimization step: 2366. Total energy = 137.0749 kcal/mol (137.0650 without restraints) Performing minimization step: 2367. Total energy = 136.9907 kcal/mol (136.9807 without restraints) Performing minimization step: 2368. Total energy = 136.9065 kcal/mol (136.8966 without restraints) Performing minimization step: 2369. Total energy = 136.8225 kcal/mol (136.8125 without restraints) Performing minimization step: 2370. Total energy = 136.7385 kcal/mol (136.7286 without restraints) Performing minimization step: 2371. Total energy = 136.6546 kcal/mol (136.6447 without restraints) Performing minimization step: 2372. Total energy = 136.5707 kcal/mol (136.5609 without restraints) Performing minimization step: 2373. Total energy = 136.4870 kcal/mol (136.4771 without restraints) Performing minimization step: 2374. Total energy = 136.4034 kcal/mol (136.3935 without restraints) Performing minimization step: 2375. Total energy = 136.3198 kcal/mol (136.3099 without restraints) Performing minimization step: 2376. Total energy = 136.2363 kcal/mol (136.2265 without restraints) Performing minimization step: 2377. Total energy = 136.1529 kcal/mol (136.1431 without restraints) Performing minimization step: 2378. Total energy = 136.0696 kcal/mol (136.0598 without restraints) Performing minimization step: 2379. Total energy = 135.9864 kcal/mol (135.9766 without restraints) Performing minimization step: 2380. Total energy = 135.9033 kcal/mol (135.8934 without restraints) Performing minimization step: 2381. Total energy = 135.8202 kcal/mol (135.8104 without restraints) Performing minimization step: 2382. Total energy = 135.7372 kcal/mol (135.7274 without restraints) Performing minimization step: 2383. Total energy = 135.6543 kcal/mol (135.6446 without restraints) Performing minimization step: 2384. Total energy = 135.5715 kcal/mol (135.5618 without restraints) Performing minimization step: 2385. Total energy = 135.4888 kcal/mol (135.4790 without restraints) Performing minimization step: 2386. Total energy = 135.4062 kcal/mol (135.3964 without restraints) Performing minimization step: 2387. Total energy = 135.3236 kcal/mol (135.3139 without restraints) Performing minimization step: 2388. Total energy = 135.2411 kcal/mol (135.2314 without restraints) Performing minimization step: 2389. Total energy = 135.1588 kcal/mol (135.1490 without restraints) Performing minimization step: 2390. Total energy = 135.0765 kcal/mol (135.0668 without restraints) Performing minimization step: 2391. Total energy = 134.9942 kcal/mol (134.9845 without restraints) Performing minimization step: 2392. Total energy = 134.9121 kcal/mol (134.9024 without restraints) Performing minimization step: 2393. Total energy = 134.8301 kcal/mol (134.8204 without restraints) Performing minimization step: 2394. Total energy = 134.7481 kcal/mol (134.7384 without restraints) Performing minimization step: 2395. Total energy = 134.6662 kcal/mol (134.6566 without restraints) Performing minimization step: 2396. Total energy = 134.5844 kcal/mol (134.5748 without restraints) Performing minimization step: 2397. Total energy = 134.5027 kcal/mol (134.4931 without restraints) Performing minimization step: 2398. Total energy = 134.4211 kcal/mol (134.4114 without restraints) Performing minimization step: 2399. Total energy = 134.3395 kcal/mol (134.3299 without restraints) Performing minimization step: 2400. Total energy = 134.2581 kcal/mol (134.2484 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 134.1767 kcal/mol (134.1671 without restraints) Performing minimization step: 2402. Total energy = 134.0954 kcal/mol (134.0858 without restraints) Performing minimization step: 2403. Total energy = 134.0142 kcal/mol (134.0046 without restraints) Performing minimization step: 2404. Total energy = 133.9330 kcal/mol (133.9235 without restraints) Performing minimization step: 2405. Total energy = 133.8520 kcal/mol (133.8424 without restraints) Performing minimization step: 2406. Total energy = 133.7710 kcal/mol (133.7615 without restraints) Performing minimization step: 2407. Total energy = 133.6901 kcal/mol (133.6806 without restraints) Performing minimization step: 2408. Total energy = 133.6093 kcal/mol (133.5998 without restraints) Performing minimization step: 2409. Total energy = 133.5286 kcal/mol (133.5191 without restraints) Performing minimization step: 2410. Total energy = 133.4480 kcal/mol (133.4385 without restraints) Performing minimization step: 2411. Total energy = 133.3674 kcal/mol (133.3579 without restraints) Performing minimization step: 2412. Total energy = 133.2870 kcal/mol (133.2775 without restraints) Performing minimization step: 2413. Total energy = 133.2066 kcal/mol (133.1971 without restraints) Performing minimization step: 2414. Total energy = 133.1263 kcal/mol (133.1168 without restraints) Performing minimization step: 2415. Total energy = 133.0461 kcal/mol (133.0366 without restraints) Performing minimization step: 2416. Total energy = 132.9659 kcal/mol (132.9565 without restraints) Performing minimization step: 2417. Total energy = 132.8859 kcal/mol (132.8764 without restraints) Performing minimization step: 2418. Total energy = 132.8059 kcal/mol (132.7965 without restraints) Performing minimization step: 2419. Total energy = 132.7260 kcal/mol (132.7166 without restraints) Performing minimization step: 2420. Total energy = 132.6462 kcal/mol (132.6368 without restraints) Performing minimization step: 2421. Total energy = 132.5665 kcal/mol (132.5571 without restraints) Performing minimization step: 2422. Total energy = 132.4869 kcal/mol (132.4775 without restraints) Performing minimization step: 2423. Total energy = 132.4073 kcal/mol (132.3979 without restraints) Performing minimization step: 2424. Total energy = 132.3278 kcal/mol (132.3185 without restraints) Performing minimization step: 2425. Total energy = 132.2484 kcal/mol (132.2391 without restraints) Performing minimization step: 2426. Total energy = 132.1691 kcal/mol (132.1598 without restraints) Performing minimization step: 2427. Total energy = 132.0899 kcal/mol (132.0805 without restraints) Performing minimization step: 2428. Total energy = 132.0107 kcal/mol (132.0014 without restraints) Performing minimization step: 2429. Total energy = 131.9317 kcal/mol (131.9223 without restraints) Performing minimization step: 2430. Total energy = 131.8527 kcal/mol (131.8434 without restraints) Performing minimization step: 2431. Total energy = 131.7738 kcal/mol (131.7645 without restraints) Performing minimization step: 2432. Total energy = 131.6950 kcal/mol (131.6857 without restraints) Performing minimization step: 2433. Total energy = 131.6162 kcal/mol (131.6069 without restraints) Performing minimization step: 2434. Total energy = 131.5377 kcal/mol (131.5285 without restraints) Performing minimization step: 2435. Total energy = 131.4592 kcal/mol (131.4499 without restraints) Performing minimization step: 2436. Total energy = 131.3807 kcal/mol (131.3714 without restraints) Performing minimization step: 2437. Total energy = 131.3023 kcal/mol (131.2930 without restraints) Performing minimization step: 2438. Total energy = 131.2240 kcal/mol (131.2147 without restraints) Performing minimization step: 2439. Total energy = 131.1457 kcal/mol (131.1365 without restraints) Performing minimization step: 2440. Total energy = 131.0675 kcal/mol (131.0583 without restraints) Performing minimization step: 2441. Total energy = 130.9894 kcal/mol (130.9802 without restraints) Performing minimization step: 2442. Total energy = 130.9114 kcal/mol (130.9022 without restraints) Performing minimization step: 2443. Total energy = 130.8335 kcal/mol (130.8243 without restraints) Performing minimization step: 2444. Total energy = 130.7557 kcal/mol (130.7465 without restraints) Performing minimization step: 2445. Total energy = 130.6779 kcal/mol (130.6687 without restraints) Performing minimization step: 2446. Total energy = 130.6002 kcal/mol (130.5911 without restraints) Performing minimization step: 2447. Total energy = 130.5226 kcal/mol (130.5135 without restraints) Performing minimization step: 2448. Total energy = 130.4451 kcal/mol (130.4360 without restraints) Performing minimization step: 2449. Total energy = 130.3677 kcal/mol (130.3585 without restraints) Performing minimization step: 2450. Total energy = 130.2903 kcal/mol (130.2812 without restraints) Performing minimization step: 2451. Total energy = 130.2130 kcal/mol (130.2039 without restraints) Performing minimization step: 2452. Total energy = 130.1358 kcal/mol (130.1267 without restraints) Performing minimization step: 2453. Total energy = 130.0587 kcal/mol (130.0496 without restraints) Performing minimization step: 2454. Total energy = 129.9817 kcal/mol (129.9726 without restraints) Performing minimization step: 2455. Total energy = 129.9047 kcal/mol (129.8957 without restraints) Performing minimization step: 2456. Total energy = 129.8279 kcal/mol (129.8188 without restraints) Performing minimization step: 2457. Total energy = 129.7511 kcal/mol (129.7420 without restraints) Performing minimization step: 2458. Total energy = 129.6743 kcal/mol (129.6653 without restraints) Performing minimization step: 2459. Total energy = 129.5977 kcal/mol (129.5887 without restraints) Performing minimization step: 2460. Total energy = 129.5212 kcal/mol (129.5121 without restraints) Performing minimization step: 2461. Total energy = 129.4447 kcal/mol (129.4357 without restraints) Performing minimization step: 2462. Total energy = 129.3683 kcal/mol (129.3593 without restraints) Performing minimization step: 2463. Total energy = 129.2920 kcal/mol (129.2830 without restraints) Performing minimization step: 2464. Total energy = 129.2158 kcal/mol (129.2068 without restraints) Performing minimization step: 2465. Total energy = 129.1396 kcal/mol (129.1306 without restraints) Performing minimization step: 2466. Total energy = 129.0635 kcal/mol (129.0546 without restraints) Performing minimization step: 2467. Total energy = 128.9875 kcal/mol (128.9786 without restraints) Performing minimization step: 2468. Total energy = 128.9116 kcal/mol (128.9027 without restraints) Performing minimization step: 2469. Total energy = 128.8358 kcal/mol (128.8268 without restraints) Performing minimization step: 2470. Total energy = 128.7600 kcal/mol (128.7511 without restraints) Performing minimization step: 2471. Total energy = 128.6844 kcal/mol (128.6754 without restraints) Performing minimization step: 2472. Total energy = 128.6088 kcal/mol (128.5998 without restraints) Performing minimization step: 2473. Total energy = 128.5333 kcal/mol (128.5243 without restraints) Performing minimization step: 2474. Total energy = 128.4578 kcal/mol (128.4489 without restraints) Performing minimization step: 2475. Total energy = 128.3825 kcal/mol (128.3736 without restraints) Performing minimization step: 2476. Total energy = 128.3072 kcal/mol (128.2983 without restraints) Performing minimization step: 2477. Total energy = 128.2320 kcal/mol (128.2231 without restraints) Performing minimization step: 2478. Total energy = 128.1569 kcal/mol (128.1480 without restraints) Performing minimization step: 2479. Total energy = 128.0818 kcal/mol (128.0730 without restraints) Performing minimization step: 2480. Total energy = 128.0069 kcal/mol (127.9980 without restraints) Performing minimization step: 2481. Total energy = 127.9320 kcal/mol (127.9232 without restraints) Performing minimization step: 2482. Total energy = 127.8572 kcal/mol (127.8484 without restraints) Performing minimization step: 2483. Total energy = 127.7825 kcal/mol (127.7736 without restraints) Performing minimization step: 2484. Total energy = 127.7079 kcal/mol (127.6991 without restraints) Performing minimization step: 2485. Total energy = 127.6333 kcal/mol (127.6245 without restraints) Performing minimization step: 2486. Total energy = 127.5588 kcal/mol (127.5500 without restraints) Performing minimization step: 2487. Total energy = 127.4844 kcal/mol (127.4756 without restraints) Performing minimization step: 2488. Total energy = 127.4101 kcal/mol (127.4013 without restraints) Performing minimization step: 2489. Total energy = 127.3358 kcal/mol (127.3271 without restraints) Performing minimization step: 2490. Total energy = 127.2617 kcal/mol (127.2529 without restraints) Performing minimization step: 2491. Total energy = 127.1876 kcal/mol (127.1788 without restraints) Performing minimization step: 2492. Total energy = 127.1135 kcal/mol (127.1048 without restraints) Performing minimization step: 2493. Total energy = 127.0396 kcal/mol (127.0309 without restraints) Performing minimization step: 2494. Total energy = 126.9657 kcal/mol (126.9570 without restraints) Performing minimization step: 2495. Total energy = 126.8920 kcal/mol (126.8833 without restraints) Performing minimization step: 2496. Total energy = 126.8183 kcal/mol (126.8096 without restraints) Performing minimization step: 2497. Total energy = 126.7446 kcal/mol (126.7360 without restraints) Performing minimization step: 2498. Total energy = 126.6711 kcal/mol (126.6624 without restraints) Performing minimization step: 2499. Total energy = 126.5976 kcal/mol (126.5890 without restraints) Performing minimization step: 2500. Total energy = 126.5242 kcal/mol (126.5156 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 126.4509 kcal/mol (126.4423 without restraints) Performing minimization step: 2502. Total energy = 126.3777 kcal/mol (126.3690 without restraints) Performing minimization step: 2503. Total energy = 126.3045 kcal/mol (126.2959 without restraints) Performing minimization step: 2504. Total energy = 126.2314 kcal/mol (126.2228 without restraints) Performing minimization step: 2505. Total energy = 126.1584 kcal/mol (126.1498 without restraints) Performing minimization step: 2506. Total energy = 126.0855 kcal/mol (126.0769 without restraints) Performing minimization step: 2507. Total energy = 126.0127 kcal/mol (126.0041 without restraints) Performing minimization step: 2508. Total energy = 125.9399 kcal/mol (125.9313 without restraints) Performing minimization step: 2509. Total energy = 125.8672 kcal/mol (125.8586 without restraints) Performing minimization step: 2510. Total energy = 125.7946 kcal/mol (125.7860 without restraints) Performing minimization step: 2511. Total energy = 125.7220 kcal/mol (125.7135 without restraints) Performing minimization step: 2512. Total energy = 125.6496 kcal/mol (125.6410 without restraints) Performing minimization step: 2513. Total energy = 125.5772 kcal/mol (125.5687 without restraints) Performing minimization step: 2514. Total energy = 125.5049 kcal/mol (125.4964 without restraints) Performing minimization step: 2515. Total energy = 125.4327 kcal/mol (125.4241 without restraints) Performing minimization step: 2516. Total energy = 125.3605 kcal/mol (125.3520 without restraints) Performing minimization step: 2517. Total energy = 125.2884 kcal/mol (125.2799 without restraints) Performing minimization step: 2518. Total energy = 125.2164 kcal/mol (125.2079 without restraints) Performing minimization step: 2519. Total energy = 125.1445 kcal/mol (125.1360 without restraints) Performing minimization step: 2520. Total energy = 125.0727 kcal/mol (125.0642 without restraints) Performing minimization step: 2521. Total energy = 125.0009 kcal/mol (124.9924 without restraints) Performing minimization step: 2522. Total energy = 124.9292 kcal/mol (124.9207 without restraints) Performing minimization step: 2523. Total energy = 124.8576 kcal/mol (124.8491 without restraints) Performing minimization step: 2524. Total energy = 124.7860 kcal/mol (124.7776 without restraints) Performing minimization step: 2525. Total energy = 124.7146 kcal/mol (124.7061 without restraints) Performing minimization step: 2526. Total energy = 124.6432 kcal/mol (124.6348 without restraints) Performing minimization step: 2527. Total energy = 124.5719 kcal/mol (124.5634 without restraints) Performing minimization step: 2528. Total energy = 124.5006 kcal/mol (124.4922 without restraints) Performing minimization step: 2529. Total energy = 124.4295 kcal/mol (124.4211 without restraints) Performing minimization step: 2530. Total energy = 124.3584 kcal/mol (124.3500 without restraints) Performing minimization step: 2531. Total energy = 124.2874 kcal/mol (124.2790 without restraints) Performing minimization step: 2532. Total energy = 124.2164 kcal/mol (124.2081 without restraints) Performing minimization step: 2533. Total energy = 124.1456 kcal/mol (124.1372 without restraints) Performing minimization step: 2534. Total energy = 124.0748 kcal/mol (124.0664 without restraints) Performing minimization step: 2535. Total energy = 124.0041 kcal/mol (123.9957 without restraints) Performing minimization step: 2536. Total energy = 123.9334 kcal/mol (123.9251 without restraints) Performing minimization step: 2537. Total energy = 123.8629 kcal/mol (123.8546 without restraints) Performing minimization step: 2538. Total energy = 123.7924 kcal/mol (123.7841 without restraints) Performing minimization step: 2539. Total energy = 123.7220 kcal/mol (123.7137 without restraints) Performing minimization step: 2540. Total energy = 123.6517 kcal/mol (123.6434 without restraints) Performing minimization step: 2541. Total energy = 123.5814 kcal/mol (123.5731 without restraints) Performing minimization step: 2542. Total energy = 123.5112 kcal/mol (123.5030 without restraints) Performing minimization step: 2543. Total energy = 123.4411 kcal/mol (123.4329 without restraints) Performing minimization step: 2544. Total energy = 123.3711 kcal/mol (123.3628 without restraints) Performing minimization step: 2545. Total energy = 123.3011 kcal/mol (123.2929 without restraints) Performing minimization step: 2546. Total energy = 123.2313 kcal/mol (123.2230 without restraints) Performing minimization step: 2547. Total energy = 123.1614 kcal/mol (123.1532 without restraints) Performing minimization step: 2548. Total energy = 123.0917 kcal/mol (123.0835 without restraints) Performing minimization step: 2549. Total energy = 123.0221 kcal/mol (123.0138 without restraints) Performing minimization step: 2550. Total energy = 122.9525 kcal/mol (122.9443 without restraints) Performing minimization step: 2551. Total energy = 122.8830 kcal/mol (122.8748 without restraints) Performing minimization step: 2552. Total energy = 122.8135 kcal/mol (122.8053 without restraints) Performing minimization step: 2553. Total energy = 122.7442 kcal/mol (122.7360 without restraints) Performing minimization step: 2554. Total energy = 122.6749 kcal/mol (122.6667 without restraints) Performing minimization step: 2555. Total energy = 122.6057 kcal/mol (122.5975 without restraints) Performing minimization step: 2556. Total energy = 122.5365 kcal/mol (122.5284 without restraints) Performing minimization step: 2557. Total energy = 122.4675 kcal/mol (122.4593 without restraints) Performing minimization step: 2558. Total energy = 122.3985 kcal/mol (122.3903 without restraints) Performing minimization step: 2559. Total energy = 122.3296 kcal/mol (122.3214 without restraints) Performing minimization step: 2560. Total energy = 122.2607 kcal/mol (122.2526 without restraints) Performing minimization step: 2561. Total energy = 122.1919 kcal/mol (122.1838 without restraints) Performing minimization step: 2562. Total energy = 122.1233 kcal/mol (122.1151 without restraints) Performing minimization step: 2563. Total energy = 122.0546 kcal/mol (122.0465 without restraints) Performing minimization step: 2564. Total energy = 121.9861 kcal/mol (121.9780 without restraints) Performing minimization step: 2565. Total energy = 121.9176 kcal/mol (121.9095 without restraints) Performing minimization step: 2566. Total energy = 121.8492 kcal/mol (121.8411 without restraints) Performing minimization step: 2567. Total energy = 121.7809 kcal/mol (121.7728 without restraints) Performing minimization step: 2568. Total energy = 121.7126 kcal/mol (121.7046 without restraints) Performing minimization step: 2569. Total energy = 121.6444 kcal/mol (121.6364 without restraints) Performing minimization step: 2570. Total energy = 121.5763 kcal/mol (121.5683 without restraints) Performing minimization step: 2571. Total energy = 121.5083 kcal/mol (121.5003 without restraints) Performing minimization step: 2572. Total energy = 121.4403 kcal/mol (121.4323 without restraints) Performing minimization step: 2573. Total energy = 121.3724 kcal/mol (121.3644 without restraints) Performing minimization step: 2574. Total energy = 121.3046 kcal/mol (121.2966 without restraints) Performing minimization step: 2575. Total energy = 121.2369 kcal/mol (121.2289 without restraints) Performing minimization step: 2576. Total energy = 121.1692 kcal/mol (121.1612 without restraints) Performing minimization step: 2577. Total energy = 121.1016 kcal/mol (121.0936 without restraints) Performing minimization step: 2578. Total energy = 121.0341 kcal/mol (121.0261 without restraints) Performing minimization step: 2579. Total energy = 120.9666 kcal/mol (120.9587 without restraints) Performing minimization step: 2580. Total energy = 120.8992 kcal/mol (120.8913 without restraints) Performing minimization step: 2581. Total energy = 120.8319 kcal/mol (120.8240 without restraints) Performing minimization step: 2582. Total energy = 120.7647 kcal/mol (120.7568 without restraints) Performing minimization step: 2583. Total energy = 120.6975 kcal/mol (120.6896 without restraints) Performing minimization step: 2584. Total energy = 120.6304 kcal/mol (120.6225 without restraints) Performing minimization step: 2585. Total energy = 120.5634 kcal/mol (120.5555 without restraints) Performing minimization step: 2586. Total energy = 120.4965 kcal/mol (120.4886 without restraints) Performing minimization step: 2587. Total energy = 120.4296 kcal/mol (120.4217 without restraints) Performing minimization step: 2588. Total energy = 120.3628 kcal/mol (120.3549 without restraints) Performing minimization step: 2589. Total energy = 120.2960 kcal/mol (120.2882 without restraints) Performing minimization step: 2590. Total energy = 120.2294 kcal/mol (120.2215 without restraints) Performing minimization step: 2591. Total energy = 120.1628 kcal/mol (120.1549 without restraints) Performing minimization step: 2592. Total energy = 120.0963 kcal/mol (120.0884 without restraints) Performing minimization step: 2593. Total energy = 120.0298 kcal/mol (120.0220 without restraints) Performing minimization step: 2594. Total energy = 119.9634 kcal/mol (119.9556 without restraints) Performing minimization step: 2595. Total energy = 119.8971 kcal/mol (119.8893 without restraints) Performing minimization step: 2596. Total energy = 119.8309 kcal/mol (119.8231 without restraints) Performing minimization step: 2597. Total energy = 119.7647 kcal/mol (119.7569 without restraints) Performing minimization step: 2598. Total energy = 119.6986 kcal/mol (119.6908 without restraints) Performing minimization step: 2599. Total energy = 119.6326 kcal/mol (119.6248 without restraints) Performing minimization step: 2600. Total energy = 119.5666 kcal/mol (119.5589 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 119.5008 kcal/mol (119.4930 without restraints) Performing minimization step: 2602. Total energy = 119.4349 kcal/mol (119.4272 without restraints) Performing minimization step: 2603. Total energy = 119.3692 kcal/mol (119.3614 without restraints) Performing minimization step: 2604. Total energy = 119.3035 kcal/mol (119.2958 without restraints) Performing minimization step: 2605. Total energy = 119.2379 kcal/mol (119.2302 without restraints) Performing minimization step: 2606. Total energy = 119.1724 kcal/mol (119.1647 without restraints) Performing minimization step: 2607. Total energy = 119.1069 kcal/mol (119.0992 without restraints) Performing minimization step: 2608. Total energy = 119.0415 kcal/mol (119.0338 without restraints) Performing minimization step: 2609. Total energy = 118.9762 kcal/mol (118.9685 without restraints) Performing minimization step: 2610. Total energy = 118.9110 kcal/mol (118.9033 without restraints) Performing minimization step: 2611. Total energy = 118.8458 kcal/mol (118.8381 without restraints) Performing minimization step: 2612. Total energy = 118.7807 kcal/mol (118.7730 without restraints) Performing minimization step: 2613. Total energy = 118.7156 kcal/mol (118.7080 without restraints) Performing minimization step: 2614. Total energy = 118.6507 kcal/mol (118.6430 without restraints) Performing minimization step: 2615. Total energy = 118.5858 kcal/mol (118.5781 without restraints) Performing minimization step: 2616. Total energy = 118.5209 kcal/mol (118.5133 without restraints) Performing minimization step: 2617. Total energy = 118.4562 kcal/mol (118.4485 without restraints) Performing minimization step: 2618. Total energy = 118.3915 kcal/mol (118.3839 without restraints) Performing minimization step: 2619. Total energy = 118.3269 kcal/mol (118.3192 without restraints) Performing minimization step: 2620. Total energy = 118.2623 kcal/mol (118.2547 without restraints) Performing minimization step: 2621. Total energy = 118.1978 kcal/mol (118.1902 without restraints) Performing minimization step: 2622. Total energy = 118.1334 kcal/mol (118.1258 without restraints) Performing minimization step: 2623. Total energy = 118.0691 kcal/mol (118.0615 without restraints) Performing minimization step: 2624. Total energy = 118.0048 kcal/mol (117.9972 without restraints) Performing minimization step: 2625. Total energy = 117.9406 kcal/mol (117.9330 without restraints) Performing minimization step: 2626. Total energy = 117.8764 kcal/mol (117.8689 without restraints) Performing minimization step: 2627. Total energy = 117.8124 kcal/mol (117.8048 without restraints) Performing minimization step: 2628. Total energy = 117.7484 kcal/mol (117.7408 without restraints) Performing minimization step: 2629. Total energy = 117.6844 kcal/mol (117.6769 without restraints) Performing minimization step: 2630. Total energy = 117.6206 kcal/mol (117.6130 without restraints) Performing minimization step: 2631. Total energy = 117.5568 kcal/mol (117.5492 without restraints) Performing minimization step: 2632. Total energy = 117.4930 kcal/mol (117.4855 without restraints) Performing minimization step: 2633. Total energy = 117.4294 kcal/mol (117.4219 without restraints) Performing minimization step: 2634. Total energy = 117.3658 kcal/mol (117.3583 without restraints) Performing minimization step: 2635. Total energy = 117.3022 kcal/mol (117.2947 without restraints) Performing minimization step: 2636. Total energy = 117.2388 kcal/mol (117.2313 without restraints) Performing minimization step: 2637. Total energy = 117.1754 kcal/mol (117.1679 without restraints) Performing minimization step: 2638. Total energy = 117.1121 kcal/mol (117.1046 without restraints) Performing minimization step: 2639. Total energy = 117.0488 kcal/mol (117.0414 without restraints) Performing minimization step: 2640. Total energy = 116.9856 kcal/mol (116.9782 without restraints) Performing minimization step: 2641. Total energy = 116.9225 kcal/mol (116.9151 without restraints) Performing minimization step: 2642. Total energy = 116.8595 kcal/mol (116.8520 without restraints) Performing minimization step: 2643. Total energy = 116.7965 kcal/mol (116.7890 without restraints) Performing minimization step: 2644. Total energy = 116.7336 kcal/mol (116.7261 without restraints) Performing minimization step: 2645. Total energy = 116.6707 kcal/mol (116.6633 without restraints) Performing minimization step: 2646. Total energy = 116.6079 kcal/mol (116.6005 without restraints) Performing minimization step: 2647. Total energy = 116.5452 kcal/mol (116.5378 without restraints) Performing minimization step: 2648. Total energy = 116.4826 kcal/mol (116.4752 without restraints) Performing minimization step: 2649. Total energy = 116.4200 kcal/mol (116.4126 without restraints) Performing minimization step: 2650. Total energy = 116.3575 kcal/mol (116.3501 without restraints) Performing minimization step: 2651. Total energy = 116.2950 kcal/mol (116.2876 without restraints) Performing minimization step: 2652. Total energy = 116.2326 kcal/mol (116.2253 without restraints) Performing minimization step: 2653. Total energy = 116.1703 kcal/mol (116.1630 without restraints) Performing minimization step: 2654. Total energy = 116.1081 kcal/mol (116.1007 without restraints) Performing minimization step: 2655. Total energy = 116.0459 kcal/mol (116.0386 without restraints) Performing minimization step: 2656. Total energy = 115.9838 kcal/mol (115.9764 without restraints) Performing minimization step: 2657. Total energy = 115.9217 kcal/mol (115.9144 without restraints) Performing minimization step: 2658. Total energy = 115.8597 kcal/mol (115.8524 without restraints) Performing minimization step: 2659. Total energy = 115.7978 kcal/mol (115.7905 without restraints) Performing minimization step: 2660. Total energy = 115.7360 kcal/mol (115.7287 without restraints) Performing minimization step: 2661. Total energy = 115.6742 kcal/mol (115.6669 without restraints) Performing minimization step: 2662. Total energy = 115.6125 kcal/mol (115.6052 without restraints) Performing minimization step: 2663. Total energy = 115.5509 kcal/mol (115.5436 without restraints) Performing minimization step: 2664. Total energy = 115.4893 kcal/mol (115.4820 without restraints) Performing minimization step: 2665. Total energy = 115.4278 kcal/mol (115.4205 without restraints) Performing minimization step: 2666. Total energy = 115.3663 kcal/mol (115.3590 without restraints) Performing minimization step: 2667. Total energy = 115.3049 kcal/mol (115.2977 without restraints) Performing minimization step: 2668. Total energy = 115.2436 kcal/mol (115.2363 without restraints) Performing minimization step: 2669. Total energy = 115.1823 kcal/mol (115.1751 without restraints) Performing minimization step: 2670. Total energy = 115.1211 kcal/mol (115.1139 without restraints) Performing minimization step: 2671. Total energy = 115.0600 kcal/mol (115.0528 without restraints) Performing minimization step: 2672. Total energy = 114.9989 kcal/mol (114.9917 without restraints) Performing minimization step: 2673. Total energy = 114.9379 kcal/mol (114.9307 without restraints) Performing minimization step: 2674. Total energy = 114.8770 kcal/mol (114.8698 without restraints) Performing minimization step: 2675. Total energy = 114.8161 kcal/mol (114.8089 without restraints) Performing minimization step: 2676. Total energy = 114.7553 kcal/mol (114.7481 without restraints) Performing minimization step: 2677. Total energy = 114.6946 kcal/mol (114.6874 without restraints) Performing minimization step: 2678. Total energy = 114.6339 kcal/mol (114.6267 without restraints) Performing minimization step: 2679. Total energy = 114.5733 kcal/mol (114.5661 without restraints) Performing minimization step: 2680. Total energy = 114.5127 kcal/mol (114.5056 without restraints) Performing minimization step: 2681. Total energy = 114.4523 kcal/mol (114.4451 without restraints) Performing minimization step: 2682. Total energy = 114.3918 kcal/mol (114.3847 without restraints) Performing minimization step: 2683. Total energy = 114.3315 kcal/mol (114.3244 without restraints) Performing minimization step: 2684. Total energy = 114.2712 kcal/mol (114.2641 without restraints) Performing minimization step: 2685. Total energy = 114.2110 kcal/mol (114.2039 without restraints) Performing minimization step: 2686. Total energy = 114.1508 kcal/mol (114.1437 without restraints) Performing minimization step: 2687. Total energy = 114.0907 kcal/mol (114.0836 without restraints) Performing minimization step: 2688. Total energy = 114.0307 kcal/mol (114.0236 without restraints) Performing minimization step: 2689. Total energy = 113.9707 kcal/mol (113.9636 without restraints) Performing minimization step: 2690. Total energy = 113.9108 kcal/mol (113.9037 without restraints) Performing minimization step: 2691. Total energy = 113.8510 kcal/mol (113.8439 without restraints) Performing minimization step: 2692. Total energy = 113.7912 kcal/mol (113.7841 without restraints) Performing minimization step: 2693. Total energy = 113.7315 kcal/mol (113.7244 without restraints) Performing minimization step: 2694. Total energy = 113.6718 kcal/mol (113.6648 without restraints) Performing minimization step: 2695. Total energy = 113.6122 kcal/mol (113.6052 without restraints) Performing minimization step: 2696. Total energy = 113.5527 kcal/mol (113.5457 without restraints) Performing minimization step: 2697. Total energy = 113.4932 kcal/mol (113.4862 without restraints) Performing minimization step: 2698. Total energy = 113.4338 kcal/mol (113.4268 without restraints) Performing minimization step: 2699. Total energy = 113.3745 kcal/mol (113.3675 without restraints) Performing minimization step: 2700. Total energy = 113.3152 kcal/mol (113.3082 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 113.2560 kcal/mol (113.2490 without restraints) Performing minimization step: 2702. Total energy = 113.1968 kcal/mol (113.1899 without restraints) Performing minimization step: 2703. Total energy = 113.1378 kcal/mol (113.1308 without restraints) Performing minimization step: 2704. Total energy = 113.0787 kcal/mol (113.0718 without restraints) Performing minimization step: 2705. Total energy = 113.0198 kcal/mol (113.0128 without restraints) Performing minimization step: 2706. Total energy = 112.9609 kcal/mol (112.9539 without restraints) Performing minimization step: 2707. Total energy = 112.9020 kcal/mol (112.8951 without restraints) Performing minimization step: 2708. Total energy = 112.8432 kcal/mol (112.8363 without restraints) Performing minimization step: 2709. Total energy = 112.7845 kcal/mol (112.7776 without restraints) Performing minimization step: 2710. Total energy = 112.7259 kcal/mol (112.7190 without restraints) Performing minimization step: 2711. Total energy = 112.6673 kcal/mol (112.6604 without restraints) Performing minimization step: 2712. Total energy = 112.6088 kcal/mol (112.6019 without restraints) Performing minimization step: 2713. Total energy = 112.5503 kcal/mol (112.5434 without restraints) Performing minimization step: 2714. Total energy = 112.4919 kcal/mol (112.4850 without restraints) Performing minimization step: 2715. Total energy = 112.4335 kcal/mol (112.4267 without restraints) Performing minimization step: 2716. Total energy = 112.3753 kcal/mol (112.3684 without restraints) Performing minimization step: 2717. Total energy = 112.3170 kcal/mol (112.3102 without restraints) Performing minimization step: 2718. Total energy = 112.2589 kcal/mol (112.2520 without restraints) Performing minimization step: 2719. Total energy = 112.2008 kcal/mol (112.1939 without restraints) Performing minimization step: 2720. Total energy = 112.1427 kcal/mol (112.1359 without restraints) Performing minimization step: 2721. Total energy = 112.0848 kcal/mol (112.0779 without restraints) Performing minimization step: 2722. Total energy = 112.0269 kcal/mol (112.0200 without restraints) Performing minimization step: 2723. Total energy = 111.9690 kcal/mol (111.9622 without restraints) Performing minimization step: 2724. Total energy = 111.9112 kcal/mol (111.9044 without restraints) Performing minimization step: 2725. Total energy = 111.8535 kcal/mol (111.8467 without restraints) Performing minimization step: 2726. Total energy = 111.7958 kcal/mol (111.7890 without restraints) Performing minimization step: 2727. Total energy = 111.7382 kcal/mol (111.7314 without restraints) Performing minimization step: 2728. Total energy = 111.6806 kcal/mol (111.6738 without restraints) Performing minimization step: 2729. Total energy = 111.6231 kcal/mol (111.6164 without restraints) Performing minimization step: 2730. Total energy = 111.5657 kcal/mol (111.5589 without restraints) Performing minimization step: 2731. Total energy = 111.5083 kcal/mol (111.5016 without restraints) Performing minimization step: 2732. Total energy = 111.4510 kcal/mol (111.4443 without restraints) Performing minimization step: 2733. Total energy = 111.3938 kcal/mol (111.3870 without restraints) Performing minimization step: 2734. Total energy = 111.3366 kcal/mol (111.3298 without restraints) Performing minimization step: 2735. Total energy = 111.2795 kcal/mol (111.2727 without restraints) Performing minimization step: 2736. Total energy = 111.2224 kcal/mol (111.2157 without restraints) Performing minimization step: 2737. Total energy = 111.1654 kcal/mol (111.1587 without restraints) Performing minimization step: 2738. Total energy = 111.1084 kcal/mol (111.1017 without restraints) Performing minimization step: 2739. Total energy = 111.0515 kcal/mol (111.0448 without restraints) Performing minimization step: 2740. Total energy = 110.9947 kcal/mol (110.9880 without restraints) Performing minimization step: 2741. Total energy = 110.9379 kcal/mol (110.9312 without restraints) Performing minimization step: 2742. Total energy = 110.8812 kcal/mol (110.8745 without restraints) Performing minimization step: 2743. Total energy = 110.8246 kcal/mol (110.8179 without restraints) Performing minimization step: 2744. Total energy = 110.7680 kcal/mol (110.7613 without restraints) Performing minimization step: 2745. Total energy = 110.7114 kcal/mol (110.7048 without restraints) Performing minimization step: 2746. Total energy = 110.6550 kcal/mol (110.6483 without restraints) Performing minimization step: 2747. Total energy = 110.5986 kcal/mol (110.5919 without restraints) Performing minimization step: 2748. Total energy = 110.5422 kcal/mol (110.5355 without restraints) Performing minimization step: 2749. Total energy = 110.4859 kcal/mol (110.4793 without restraints) Performing minimization step: 2750. Total energy = 110.4297 kcal/mol (110.4230 without restraints) Performing minimization step: 2751. Total energy = 110.3735 kcal/mol (110.3668 without restraints) Performing minimization step: 2752. Total energy = 110.3173 kcal/mol (110.3107 without restraints) Performing minimization step: 2753. Total energy = 110.2613 kcal/mol (110.2547 without restraints) Performing minimization step: 2754. Total energy = 110.2053 kcal/mol (110.1987 without restraints) Performing minimization step: 2755. Total energy = 110.1493 kcal/mol (110.1427 without restraints) Performing minimization step: 2756. Total energy = 110.0934 kcal/mol (110.0868 without restraints) Performing minimization step: 2757. Total energy = 110.0376 kcal/mol (110.0310 without restraints) Performing minimization step: 2758. Total energy = 109.9818 kcal/mol (109.9753 without restraints) Performing minimization step: 2759. Total energy = 109.9261 kcal/mol (109.9195 without restraints) Performing minimization step: 2760. Total energy = 109.8705 kcal/mol (109.8639 without restraints) Performing minimization step: 2761. Total energy = 109.8149 kcal/mol (109.8083 without restraints) Performing minimization step: 2762. Total energy = 109.7593 kcal/mol (109.7528 without restraints) Performing minimization step: 2763. Total energy = 109.7038 kcal/mol (109.6973 without restraints) Performing minimization step: 2764. Total energy = 109.6484 kcal/mol (109.6419 without restraints) Performing minimization step: 2765. Total energy = 109.5930 kcal/mol (109.5865 without restraints) Performing minimization step: 2766. Total energy = 109.5377 kcal/mol (109.5312 without restraints) Performing minimization step: 2767. Total energy = 109.4825 kcal/mol (109.4759 without restraints) Performing minimization step: 2768. Total energy = 109.4273 kcal/mol (109.4208 without restraints) Performing minimization step: 2769. Total energy = 109.3721 kcal/mol (109.3656 without restraints) Performing minimization step: 2770. Total energy = 109.3170 kcal/mol (109.3105 without restraints) Performing minimization step: 2771. Total energy = 109.2620 kcal/mol (109.2555 without restraints) Performing minimization step: 2772. Total energy = 109.2071 kcal/mol (109.2006 without restraints) Performing minimization step: 2773. Total energy = 109.1521 kcal/mol (109.1457 without restraints) Performing minimization step: 2774. Total energy = 109.0973 kcal/mol (109.0908 without restraints) Performing minimization step: 2775. Total energy = 109.0425 kcal/mol (109.0360 without restraints) Performing minimization step: 2776. Total energy = 108.9877 kcal/mol (108.9813 without restraints) Performing minimization step: 2777. Total energy = 108.9331 kcal/mol (108.9266 without restraints) Performing minimization step: 2778. Total energy = 108.8784 kcal/mol (108.8720 without restraints) Performing minimization step: 2779. Total energy = 108.8239 kcal/mol (108.8174 without restraints) Performing minimization step: 2780. Total energy = 108.7693 kcal/mol (108.7629 without restraints) Performing minimization step: 2781. Total energy = 108.7149 kcal/mol (108.7085 without restraints) Performing minimization step: 2782. Total energy = 108.6605 kcal/mol (108.6541 without restraints) Performing minimization step: 2783. Total energy = 108.6061 kcal/mol (108.5997 without restraints) Performing minimization step: 2784. Total energy = 108.5518 kcal/mol (108.5454 without restraints) Performing minimization step: 2785. Total energy = 108.4976 kcal/mol (108.4912 without restraints) Performing minimization step: 2786. Total energy = 108.4434 kcal/mol (108.4370 without restraints) Performing minimization step: 2787. Total energy = 108.3893 kcal/mol (108.3829 without restraints) Performing minimization step: 2788. Total energy = 108.3352 kcal/mol (108.3288 without restraints) Performing minimization step: 2789. Total energy = 108.2812 kcal/mol (108.2748 without restraints) Performing minimization step: 2790. Total energy = 108.2273 kcal/mol (108.2209 without restraints) Performing minimization step: 2791. Total energy = 108.1734 kcal/mol (108.1670 without restraints) Performing minimization step: 2792. Total energy = 108.1195 kcal/mol (108.1132 without restraints) Performing minimization step: 2793. Total energy = 108.0657 kcal/mol (108.0594 without restraints) Performing minimization step: 2794. Total energy = 108.0120 kcal/mol (108.0056 without restraints) Performing minimization step: 2795. Total energy = 107.9583 kcal/mol (107.9520 without restraints) Performing minimization step: 2796. Total energy = 107.9047 kcal/mol (107.8983 without restraints) Performing minimization step: 2797. Total energy = 107.8511 kcal/mol (107.8448 without restraints) Performing minimization step: 2798. Total energy = 107.7976 kcal/mol (107.7913 without restraints) Performing minimization step: 2799. Total energy = 107.7441 kcal/mol (107.7378 without restraints) Performing minimization step: 2800. Total energy = 107.6907 kcal/mol (107.6844 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 107.6374 kcal/mol (107.6311 without restraints) Performing minimization step: 2802. Total energy = 107.5841 kcal/mol (107.5778 without restraints) Performing minimization step: 2803. Total energy = 107.5308 kcal/mol (107.5245 without restraints) Performing minimization step: 2804. Total energy = 107.4776 kcal/mol (107.4714 without restraints) Performing minimization step: 2805. Total energy = 107.4245 kcal/mol (107.4182 without restraints) Performing minimization step: 2806. Total energy = 107.3714 kcal/mol (107.3652 without restraints) Performing minimization step: 2807. Total energy = 107.3184 kcal/mol (107.3121 without restraints) Performing minimization step: 2808. Total energy = 107.2654 kcal/mol (107.2592 without restraints) Performing minimization step: 2809. Total energy = 107.2125 kcal/mol (107.2063 without restraints) Performing minimization step: 2810. Total energy = 107.1596 kcal/mol (107.1534 without restraints) Performing minimization step: 2811. Total energy = 107.1068 kcal/mol (107.1006 without restraints) Performing minimization step: 2812. Total energy = 107.0541 kcal/mol (107.0479 without restraints) Performing minimization step: 2813. Total energy = 107.0014 kcal/mol (106.9952 without restraints) Performing minimization step: 2814. Total energy = 106.9487 kcal/mol (106.9425 without restraints) Performing minimization step: 2815. Total energy = 106.8961 kcal/mol (106.8899 without restraints) Performing minimization step: 2816. Total energy = 106.8436 kcal/mol (106.8374 without restraints) Performing minimization step: 2817. Total energy = 106.7911 kcal/mol (106.7849 without restraints) Performing minimization step: 2818. Total energy = 106.7387 kcal/mol (106.7325 without restraints) Performing minimization step: 2819. Total energy = 106.6863 kcal/mol (106.6801 without restraints) Performing minimization step: 2820. Total energy = 106.6340 kcal/mol (106.6278 without restraints) Performing minimization step: 2821. Total energy = 106.5817 kcal/mol (106.5755 without restraints) Performing minimization step: 2822. Total energy = 106.5295 kcal/mol (106.5233 without restraints) Performing minimization step: 2823. Total energy = 106.4773 kcal/mol (106.4711 without restraints) Performing minimization step: 2824. Total energy = 106.4252 kcal/mol (106.4190 without restraints) Performing minimization step: 2825. Total energy = 106.3731 kcal/mol (106.3670 without restraints) Performing minimization step: 2826. Total energy = 106.3211 kcal/mol (106.3150 without restraints) Performing minimization step: 2827. Total energy = 106.2691 kcal/mol (106.2630 without restraints) Performing minimization step: 2828. Total energy = 106.2172 kcal/mol (106.2111 without restraints) Performing minimization step: 2829. Total energy = 106.1654 kcal/mol (106.1593 without restraints) Performing minimization step: 2830. Total energy = 106.1136 kcal/mol (106.1075 without restraints) Performing minimization step: 2831. Total energy = 106.0618 kcal/mol (106.0557 without restraints) Performing minimization step: 2832. Total energy = 106.0101 kcal/mol (106.0040 without restraints) Performing minimization step: 2833. Total energy = 105.9585 kcal/mol (105.9524 without restraints) Performing minimization step: 2834. Total energy = 105.9069 kcal/mol (105.9008 without restraints) Performing minimization step: 2835. Total energy = 105.8554 kcal/mol (105.8493 without restraints) Performing minimization step: 2836. Total energy = 105.8039 kcal/mol (105.7978 without restraints) Performing minimization step: 2837. Total energy = 105.7525 kcal/mol (105.7464 without restraints) Performing minimization step: 2838. Total energy = 105.7011 kcal/mol (105.6950 without restraints) Performing minimization step: 2839. Total energy = 105.6497 kcal/mol (105.6437 without restraints) Performing minimization step: 2840. Total energy = 105.5985 kcal/mol (105.5924 without restraints) Performing minimization step: 2841. Total energy = 105.5472 kcal/mol (105.5412 without restraints) Performing minimization step: 2842. Total energy = 105.4961 kcal/mol (105.4900 without restraints) Performing minimization step: 2843. Total energy = 105.4449 kcal/mol (105.4389 without restraints) Performing minimization step: 2844. Total energy = 105.3939 kcal/mol (105.3878 without restraints) Performing minimization step: 2845. Total energy = 105.3428 kcal/mol (105.3368 without restraints) Performing minimization step: 2846. Total energy = 105.2919 kcal/mol (105.2858 without restraints) Performing minimization step: 2847. Total energy = 105.2409 kcal/mol (105.2349 without restraints) Performing minimization step: 2848. Total energy = 105.1901 kcal/mol (105.1841 without restraints) Performing minimization step: 2849. Total energy = 105.1392 kcal/mol (105.1333 without restraints) Performing minimization step: 2850. Total energy = 105.0885 kcal/mol (105.0825 without restraints) Performing minimization step: 2851. Total energy = 105.0378 kcal/mol (105.0318 without restraints) Performing minimization step: 2852. Total energy = 104.9871 kcal/mol (104.9811 without restraints) Performing minimization step: 2853. Total energy = 104.9365 kcal/mol (104.9305 without restraints) Performing minimization step: 2854. Total energy = 104.8859 kcal/mol (104.8800 without restraints) Performing minimization step: 2855. Total energy = 104.8354 kcal/mol (104.8294 without restraints) Performing minimization step: 2856. Total energy = 104.7849 kcal/mol (104.7790 without restraints) Performing minimization step: 2857. Total energy = 104.7345 kcal/mol (104.7286 without restraints) Performing minimization step: 2858. Total energy = 104.6842 kcal/mol (104.6782 without restraints) Performing minimization step: 2859. Total energy = 104.6339 kcal/mol (104.6279 without restraints) Performing minimization step: 2860. Total energy = 104.5836 kcal/mol (104.5777 without restraints) Performing minimization step: 2861. Total energy = 104.5334 kcal/mol (104.5275 without restraints) Performing minimization step: 2862. Total energy = 104.4832 kcal/mol (104.4773 without restraints) Performing minimization step: 2863. Total energy = 104.4331 kcal/mol (104.4272 without restraints) Performing minimization step: 2864. Total energy = 104.3830 kcal/mol (104.3771 without restraints) Performing minimization step: 2865. Total energy = 104.3330 kcal/mol (104.3271 without restraints) Performing minimization step: 2866. Total energy = 104.2831 kcal/mol (104.2772 without restraints) Performing minimization step: 2867. Total energy = 104.2332 kcal/mol (104.2273 without restraints) Performing minimization step: 2868. Total energy = 104.1833 kcal/mol (104.1774 without restraints) Performing minimization step: 2869. Total energy = 104.1335 kcal/mol (104.1276 without restraints) Performing minimization step: 2870. Total energy = 104.0837 kcal/mol (104.0778 without restraints) Performing minimization step: 2871. Total energy = 104.0340 kcal/mol (104.0281 without restraints) Performing minimization step: 2872. Total energy = 103.9843 kcal/mol (103.9785 without restraints) Performing minimization step: 2873. Total energy = 103.9347 kcal/mol (103.9289 without restraints) Performing minimization step: 2874. Total energy = 103.8852 kcal/mol (103.8793 without restraints) Performing minimization step: 2875. Total energy = 103.8356 kcal/mol (103.8298 without restraints) Performing minimization step: 2876. Total energy = 103.7862 kcal/mol (103.7803 without restraints) Performing minimization step: 2877. Total energy = 103.7367 kcal/mol (103.7309 without restraints) Performing minimization step: 2878. Total energy = 103.6874 kcal/mol (103.6816 without restraints) Performing minimization step: 2879. Total energy = 103.6381 kcal/mol (103.6322 without restraints) Performing minimization step: 2880. Total energy = 103.5888 kcal/mol (103.5830 without restraints) Performing minimization step: 2881. Total energy = 103.5396 kcal/mol (103.5338 without restraints) Performing minimization step: 2882. Total energy = 103.4904 kcal/mol (103.4846 without restraints) Performing minimization step: 2883. Total energy = 103.4413 kcal/mol (103.4355 without restraints) Performing minimization step: 2884. Total energy = 103.3922 kcal/mol (103.3864 without restraints) Performing minimization step: 2885. Total energy = 103.3431 kcal/mol (103.3374 without restraints) Performing minimization step: 2886. Total energy = 103.2942 kcal/mol (103.2884 without restraints) Performing minimization step: 2887. Total energy = 103.2452 kcal/mol (103.2395 without restraints) Performing minimization step: 2888. Total energy = 103.1963 kcal/mol (103.1906 without restraints) Performing minimization step: 2889. Total energy = 103.1475 kcal/mol (103.1417 without restraints) Performing minimization step: 2890. Total energy = 103.0987 kcal/mol (103.0930 without restraints) Performing minimization step: 2891. Total energy = 103.0500 kcal/mol (103.0442 without restraints) Performing minimization step: 2892. Total energy = 103.0013 kcal/mol (102.9955 without restraints) Performing minimization step: 2893. Total energy = 102.9526 kcal/mol (102.9469 without restraints) Performing minimization step: 2894. Total energy = 102.9040 kcal/mol (102.8983 without restraints) Performing minimization step: 2895. Total energy = 102.8555 kcal/mol (102.8498 without restraints) Performing minimization step: 2896. Total energy = 102.8070 kcal/mol (102.8013 without restraints) Performing minimization step: 2897. Total energy = 102.7585 kcal/mol (102.7528 without restraints) Performing minimization step: 2898. Total energy = 102.7101 kcal/mol (102.7044 without restraints) Performing minimization step: 2899. Total energy = 102.6618 kcal/mol (102.6561 without restraints) Performing minimization step: 2900. Total energy = 102.6135 kcal/mol (102.6078 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 102.5652 kcal/mol (102.5595 without restraints) Performing minimization step: 2902. Total energy = 102.5170 kcal/mol (102.5113 without restraints) Performing minimization step: 2903. Total energy = 102.4688 kcal/mol (102.4631 without restraints) Performing minimization step: 2904. Total energy = 102.4207 kcal/mol (102.4150 without restraints) Performing minimization step: 2905. Total energy = 102.3726 kcal/mol (102.3669 without restraints) Performing minimization step: 2906. Total energy = 102.3246 kcal/mol (102.3189 without restraints) Performing minimization step: 2907. Total energy = 102.2766 kcal/mol (102.2709 without restraints) Performing minimization step: 2908. Total energy = 102.2286 kcal/mol (102.2230 without restraints) Performing minimization step: 2909. Total energy = 102.1808 kcal/mol (102.1751 without restraints) Performing minimization step: 2910. Total energy = 102.1329 kcal/mol (102.1273 without restraints) Performing minimization step: 2911. Total energy = 102.0851 kcal/mol (102.0795 without restraints) Performing minimization step: 2912. Total energy = 102.0374 kcal/mol (102.0317 without restraints) Performing minimization step: 2913. Total energy = 101.9897 kcal/mol (101.9840 without restraints) Performing minimization step: 2914. Total energy = 101.9420 kcal/mol (101.9364 without restraints) Performing minimization step: 2915. Total energy = 101.8944 kcal/mol (101.8888 without restraints) Performing minimization step: 2916. Total energy = 101.8470 kcal/mol (101.8416 without restraints) Performing minimization step: 2917. Total energy = 101.7997 kcal/mol (101.7941 without restraints) Performing minimization step: 2918. Total energy = 101.7523 kcal/mol (101.7467 without restraints) Performing minimization step: 2919. Total energy = 101.7048 kcal/mol (101.6992 without restraints) Performing minimization step: 2920. Total energy = 101.6574 kcal/mol (101.6519 without restraints) Performing minimization step: 2921. Total energy = 101.6101 kcal/mol (101.6045 without restraints) Performing minimization step: 2922. Total energy = 101.5628 kcal/mol (101.5572 without restraints) Performing minimization step: 2923. Total energy = 101.5156 kcal/mol (101.5100 without restraints) Performing minimization step: 2924. Total energy = 101.4684 kcal/mol (101.4628 without restraints) Performing minimization step: 2925. Total energy = 101.4212 kcal/mol (101.4157 without restraints) Performing minimization step: 2926. Total energy = 101.3741 kcal/mol (101.3686 without restraints) Performing minimization step: 2927. Total energy = 101.3271 kcal/mol (101.3215 without restraints) Performing minimization step: 2928. Total energy = 101.2801 kcal/mol (101.2745 without restraints) Performing minimization step: 2929. Total energy = 101.2331 kcal/mol (101.2275 without restraints) Performing minimization step: 2930. Total energy = 101.1862 kcal/mol (101.1806 without restraints) Performing minimization step: 2931. Total energy = 101.1393 kcal/mol (101.1338 without restraints) Performing minimization step: 2932. Total energy = 101.0925 kcal/mol (101.0869 without restraints) Performing minimization step: 2933. Total energy = 101.0457 kcal/mol (101.0401 without restraints) Performing minimization step: 2934. Total energy = 100.9989 kcal/mol (100.9934 without restraints) Performing minimization step: 2935. Total energy = 100.9522 kcal/mol (100.9467 without restraints) Performing minimization step: 2936. Total energy = 100.9056 kcal/mol (100.9001 without restraints) Performing minimization step: 2937. Total energy = 100.8590 kcal/mol (100.8535 without restraints) Performing minimization step: 2938. Total energy = 100.8124 kcal/mol (100.8069 without restraints) Performing minimization step: 2939. Total energy = 100.7659 kcal/mol (100.7604 without restraints) Performing minimization step: 2940. Total energy = 100.7194 kcal/mol (100.7139 without restraints) Performing minimization step: 2941. Total energy = 100.6730 kcal/mol (100.6675 without restraints) Performing minimization step: 2942. Total energy = 100.6266 kcal/mol (100.6211 without restraints) Performing minimization step: 2943. Total energy = 100.5803 kcal/mol (100.5748 without restraints) Performing minimization step: 2944. Total energy = 100.5340 kcal/mol (100.5285 without restraints) Performing minimization step: 2945. Total energy = 100.4877 kcal/mol (100.4822 without restraints) Performing minimization step: 2946. Total energy = 100.4415 kcal/mol (100.4360 without restraints) Performing minimization step: 2947. Total energy = 100.3953 kcal/mol (100.3899 without restraints) Performing minimization step: 2948. Total energy = 100.3492 kcal/mol (100.3438 without restraints) Performing minimization step: 2949. Total energy = 100.3031 kcal/mol (100.2977 without restraints) Performing minimization step: 2950. Total energy = 100.2571 kcal/mol (100.2517 without restraints) Performing minimization step: 2951. Total energy = 100.2111 kcal/mol (100.2057 without restraints) Performing minimization step: 2952. Total energy = 100.1652 kcal/mol (100.1598 without restraints) Performing minimization step: 2953. Total energy = 100.1193 kcal/mol (100.1139 without restraints) Performing minimization step: 2954. Total energy = 100.0734 kcal/mol (100.0680 without restraints) Performing minimization step: 2955. Total energy = 100.0276 kcal/mol (100.0222 without restraints) Performing minimization step: 2956. Total energy = 99.9819 kcal/mol (99.9765 without restraints) Performing minimization step: 2957. Total energy = 99.9361 kcal/mol (99.9307 without restraints) Performing minimization step: 2958. Total energy = 99.8904 kcal/mol (99.8851 without restraints) Performing minimization step: 2959. Total energy = 99.8448 kcal/mol (99.8394 without restraints) Performing minimization step: 2960. Total energy = 99.7992 kcal/mol (99.7938 without restraints) Performing minimization step: 2961. Total energy = 99.7537 kcal/mol (99.7483 without restraints) Performing minimization step: 2962. Total energy = 99.7082 kcal/mol (99.7028 without restraints) Performing minimization step: 2963. Total energy = 99.6627 kcal/mol (99.6573 without restraints) Performing minimization step: 2964. Total energy = 99.6173 kcal/mol (99.6119 without restraints) Performing minimization step: 2965. Total energy = 99.5719 kcal/mol (99.5665 without restraints) Performing minimization step: 2966. Total energy = 99.5266 kcal/mol (99.5212 without restraints) Performing minimization step: 2967. Total energy = 99.4813 kcal/mol (99.4759 without restraints) Performing minimization step: 2968. Total energy = 99.4360 kcal/mol (99.4307 without restraints) Performing minimization step: 2969. Total energy = 99.3908 kcal/mol (99.3855 without restraints) Performing minimization step: 2970. Total energy = 99.3457 kcal/mol (99.3403 without restraints) Performing minimization step: 2971. Total energy = 99.3005 kcal/mol (99.2952 without restraints) Performing minimization step: 2972. Total energy = 99.2555 kcal/mol (99.2501 without restraints) Performing minimization step: 2973. Total energy = 99.2104 kcal/mol (99.2051 without restraints) Performing minimization step: 2974. Total energy = 99.1654 kcal/mol (99.1601 without restraints) Performing minimization step: 2975. Total energy = 99.1205 kcal/mol (99.1152 without restraints) Performing minimization step: 2976. Total energy = 99.0756 kcal/mol (99.0703 without restraints) Performing minimization step: 2977. Total energy = 99.0307 kcal/mol (99.0254 without restraints) Performing minimization step: 2978. Total energy = 98.9859 kcal/mol (98.9806 without restraints) Performing minimization step: 2979. Total energy = 98.9411 kcal/mol (98.9358 without restraints) Performing minimization step: 2980. Total energy = 98.8964 kcal/mol (98.8911 without restraints) Performing minimization step: 2981. Total energy = 98.8517 kcal/mol (98.8464 without restraints) Performing minimization step: 2982. Total energy = 98.8070 kcal/mol (98.8017 without restraints) Performing minimization step: 2983. Total energy = 98.7624 kcal/mol (98.7571 without restraints) Performing minimization step: 2984. Total energy = 98.7178 kcal/mol (98.7126 without restraints) Performing minimization step: 2985. Total energy = 98.6733 kcal/mol (98.6681 without restraints) Performing minimization step: 2986. Total energy = 98.6288 kcal/mol (98.6236 without restraints) Performing minimization step: 2987. Total energy = 98.5844 kcal/mol (98.5791 without restraints) Performing minimization step: 2988. Total energy = 98.5400 kcal/mol (98.5347 without restraints) Performing minimization step: 2989. Total energy = 98.4956 kcal/mol (98.4904 without restraints) Performing minimization step: 2990. Total energy = 98.4513 kcal/mol (98.4461 without restraints) Performing minimization step: 2991. Total energy = 98.4070 kcal/mol (98.4018 without restraints) Performing minimization step: 2992. Total energy = 98.3628 kcal/mol (98.3576 without restraints) Performing minimization step: 2993. Total energy = 98.3186 kcal/mol (98.3134 without restraints) Performing minimization step: 2994. Total energy = 98.2744 kcal/mol (98.2692 without restraints) Performing minimization step: 2995. Total energy = 98.2303 kcal/mol (98.2251 without restraints) Performing minimization step: 2996. Total energy = 98.1862 kcal/mol (98.1810 without restraints) Performing minimization step: 2997. Total energy = 98.1422 kcal/mol (98.1370 without restraints) Performing minimization step: 2998. Total energy = 98.0982 kcal/mol (98.0930 without restraints) Performing minimization step: 2999. Total energy = 98.0543 kcal/mol (98.0491 without restraints) Performing minimization step: 3000. Total energy = 98.0104 kcal/mol (98.0052 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 97.9665 kcal/mol (97.9613 without restraints) Performing minimization step: 3002. Total energy = 97.9227 kcal/mol (97.9175 without restraints) Performing minimization step: 3003. Total energy = 97.8789 kcal/mol (97.8737 without restraints) Performing minimization step: 3004. Total energy = 97.8352 kcal/mol (97.8300 without restraints) Performing minimization step: 3005. Total energy = 97.7914 kcal/mol (97.7863 without restraints) Performing minimization step: 3006. Total energy = 97.7478 kcal/mol (97.7426 without restraints) Performing minimization step: 3007. Total energy = 97.7042 kcal/mol (97.6990 without restraints) Performing minimization step: 3008. Total energy = 97.6606 kcal/mol (97.6554 without restraints) Performing minimization step: 3009. Total energy = 97.6170 kcal/mol (97.6119 without restraints) Performing minimization step: 3010. Total energy = 97.5735 kcal/mol (97.5684 without restraints) Performing minimization step: 3011. Total energy = 97.5301 kcal/mol (97.5250 without restraints) Performing minimization step: 3012. Total energy = 97.4867 kcal/mol (97.4815 without restraints) Performing minimization step: 3013. Total energy = 97.4433 kcal/mol (97.4382 without restraints) Performing minimization step: 3014. Total energy = 97.3999 kcal/mol (97.3948 without restraints) Performing minimization step: 3015. Total energy = 97.3566 kcal/mol (97.3515 without restraints) Performing minimization step: 3016. Total energy = 97.3134 kcal/mol (97.3083 without restraints) Performing minimization step: 3017. Total energy = 97.2702 kcal/mol (97.2651 without restraints) Performing minimization step: 3018. Total energy = 97.2270 kcal/mol (97.2219 without restraints) Performing minimization step: 3019. Total energy = 97.1839 kcal/mol (97.1788 without restraints) Performing minimization step: 3020. Total energy = 97.1408 kcal/mol (97.1357 without restraints) Performing minimization step: 3021. Total energy = 97.0977 kcal/mol (97.0926 without restraints) Performing minimization step: 3022. Total energy = 97.0547 kcal/mol (97.0496 without restraints) Performing minimization step: 3023. Total energy = 97.0117 kcal/mol (97.0066 without restraints) Performing minimization step: 3024. Total energy = 96.9688 kcal/mol (96.9637 without restraints) Performing minimization step: 3025. Total energy = 96.9259 kcal/mol (96.9208 without restraints) Performing minimization step: 3026. Total energy = 96.8830 kcal/mol (96.8779 without restraints) Performing minimization step: 3027. Total energy = 96.8402 kcal/mol (96.8351 without restraints) Performing minimization step: 3028. Total energy = 96.7974 kcal/mol (96.7923 without restraints) Performing minimization step: 3029. Total energy = 96.7546 kcal/mol (96.7496 without restraints) Performing minimization step: 3030. Total energy = 96.7119 kcal/mol (96.7069 without restraints) Performing minimization step: 3031. Total energy = 96.6693 kcal/mol (96.6642 without restraints) Performing minimization step: 3032. Total energy = 96.6267 kcal/mol (96.6216 without restraints) Performing minimization step: 3033. Total energy = 96.5841 kcal/mol (96.5790 without restraints) Performing minimization step: 3034. Total energy = 96.5415 kcal/mol (96.5365 without restraints) Performing minimization step: 3035. Total energy = 96.4990 kcal/mol (96.4940 without restraints) Performing minimization step: 3036. Total energy = 96.4565 kcal/mol (96.4515 without restraints) Performing minimization step: 3037. Total energy = 96.4141 kcal/mol (96.4091 without restraints) Performing minimization step: 3038. Total energy = 96.3717 kcal/mol (96.3667 without restraints) Performing minimization step: 3039. Total energy = 96.3294 kcal/mol (96.3244 without restraints) Performing minimization step: 3040. Total energy = 96.2871 kcal/mol (96.2821 without restraints) Performing minimization step: 3041. Total energy = 96.2448 kcal/mol (96.2398 without restraints) Performing minimization step: 3042. Total energy = 96.2026 kcal/mol (96.1976 without restraints) Performing minimization step: 3043. Total energy = 96.1604 kcal/mol (96.1554 without restraints) Performing minimization step: 3044. Total energy = 96.1182 kcal/mol (96.1132 without restraints) Performing minimization step: 3045. Total energy = 96.0761 kcal/mol (96.0711 without restraints) Performing minimization step: 3046. Total energy = 96.0340 kcal/mol (96.0290 without restraints) Performing minimization step: 3047. Total energy = 95.9919 kcal/mol (95.9870 without restraints) Performing minimization step: 3048. Total energy = 95.9499 kcal/mol (95.9450 without restraints) Performing minimization step: 3049. Total energy = 95.9080 kcal/mol (95.9030 without restraints) Performing minimization step: 3050. Total energy = 95.8660 kcal/mol (95.8611 without restraints) Performing minimization step: 3051. Total energy = 95.8242 kcal/mol (95.8192 without restraints) Performing minimization step: 3052. Total energy = 95.7823 kcal/mol (95.7774 without restraints) Performing minimization step: 3053. Total energy = 95.7405 kcal/mol (95.7356 without restraints) Performing minimization step: 3054. Total energy = 95.6987 kcal/mol (95.6938 without restraints) Performing minimization step: 3055. Total energy = 95.6570 kcal/mol (95.6521 without restraints) Performing minimization step: 3056. Total energy = 95.6153 kcal/mol (95.6104 without restraints) Performing minimization step: 3057. Total energy = 95.5736 kcal/mol (95.5687 without restraints) Performing minimization step: 3058. Total energy = 95.5320 kcal/mol (95.5271 without restraints) Performing minimization step: 3059. Total energy = 95.4904 kcal/mol (95.4855 without restraints) Performing minimization step: 3060. Total energy = 95.4488 kcal/mol (95.4439 without restraints) Performing minimization step: 3061. Total energy = 95.4073 kcal/mol (95.4024 without restraints) Performing minimization step: 3062. Total energy = 95.3659 kcal/mol (95.3610 without restraints) Performing minimization step: 3063. Total energy = 95.3244 kcal/mol (95.3195 without restraints) Performing minimization step: 3064. Total energy = 95.2830 kcal/mol (95.2781 without restraints) Performing minimization step: 3065. Total energy = 95.2417 kcal/mol (95.2368 without restraints) Performing minimization step: 3066. Total energy = 95.2003 kcal/mol (95.1955 without restraints) Performing minimization step: 3067. Total energy = 95.1591 kcal/mol (95.1542 without restraints) Performing minimization step: 3068. Total energy = 95.1178 kcal/mol (95.1129 without restraints) Performing minimization step: 3069. Total energy = 95.0766 kcal/mol (95.0717 without restraints) Performing minimization step: 3070. Total energy = 95.0354 kcal/mol (95.0306 without restraints) Performing minimization step: 3071. Total energy = 94.9943 kcal/mol (94.9894 without restraints) Performing minimization step: 3072. Total energy = 94.9532 kcal/mol (94.9483 without restraints) Performing minimization step: 3073. Total energy = 94.9121 kcal/mol (94.9073 without restraints) Performing minimization step: 3074. Total energy = 94.8711 kcal/mol (94.8662 without restraints) Performing minimization step: 3075. Total energy = 94.8301 kcal/mol (94.8253 without restraints) Performing minimization step: 3076. Total energy = 94.7891 kcal/mol (94.7843 without restraints) Performing minimization step: 3077. Total energy = 94.7482 kcal/mol (94.7434 without restraints) Performing minimization step: 3078. Total energy = 94.7073 kcal/mol (94.7025 without restraints) Performing minimization step: 3079. Total energy = 94.6665 kcal/mol (94.6617 without restraints) Performing minimization step: 3080. Total energy = 94.6257 kcal/mol (94.6209 without restraints) Performing minimization step: 3081. Total energy = 94.5849 kcal/mol (94.5801 without restraints) Performing minimization step: 3082. Total energy = 94.5442 kcal/mol (94.5394 without restraints) Performing minimization step: 3083. Total energy = 94.5035 kcal/mol (94.4987 without restraints) Performing minimization step: 3084. Total energy = 94.4628 kcal/mol (94.4580 without restraints) Performing minimization step: 3085. Total energy = 94.4222 kcal/mol (94.4174 without restraints) Performing minimization step: 3086. Total energy = 94.3816 kcal/mol (94.3768 without restraints) Performing minimization step: 3087. Total energy = 94.3411 kcal/mol (94.3363 without restraints) Performing minimization step: 3088. Total energy = 94.3006 kcal/mol (94.2958 without restraints) Performing minimization step: 3089. Total energy = 94.2601 kcal/mol (94.2553 without restraints) Performing minimization step: 3090. Total energy = 94.2196 kcal/mol (94.2149 without restraints) Performing minimization step: 3091. Total energy = 94.1792 kcal/mol (94.1745 without restraints) Performing minimization step: 3092. Total energy = 94.1389 kcal/mol (94.1341 without restraints) Performing minimization step: 3093. Total energy = 94.0985 kcal/mol (94.0938 without restraints) Performing minimization step: 3094. Total energy = 94.0582 kcal/mol (94.0535 without restraints) Performing minimization step: 3095. Total energy = 94.0180 kcal/mol (94.0132 without restraints) Performing minimization step: 3096. Total energy = 93.9777 kcal/mol (93.9730 without restraints) Performing minimization step: 3097. Total energy = 93.9375 kcal/mol (93.9328 without restraints) Performing minimization step: 3098. Total energy = 93.8974 kcal/mol (93.8927 without restraints) Performing minimization step: 3099. Total energy = 93.8573 kcal/mol (93.8525 without restraints) Performing minimization step: 3100. Total energy = 93.8172 kcal/mol (93.8125 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 93.7771 kcal/mol (93.7724 without restraints) Performing minimization step: 3102. Total energy = 93.7371 kcal/mol (93.7324 without restraints) Performing minimization step: 3103. Total energy = 93.6972 kcal/mol (93.6924 without restraints) Performing minimization step: 3104. Total energy = 93.6572 kcal/mol (93.6525 without restraints) Performing minimization step: 3105. Total energy = 93.6173 kcal/mol (93.6126 without restraints) Performing minimization step: 3106. Total energy = 93.5774 kcal/mol (93.5727 without restraints) Performing minimization step: 3107. Total energy = 93.5376 kcal/mol (93.5329 without restraints) Performing minimization step: 3108. Total energy = 93.4978 kcal/mol (93.4931 without restraints) Performing minimization step: 3109. Total energy = 93.4580 kcal/mol (93.4533 without restraints) Performing minimization step: 3110. Total energy = 93.4183 kcal/mol (93.4136 without restraints) Performing minimization step: 3111. Total energy = 93.3786 kcal/mol (93.3739 without restraints) Performing minimization step: 3112. Total energy = 93.3390 kcal/mol (93.3343 without restraints) Performing minimization step: 3113. Total energy = 93.2993 kcal/mol (93.2947 without restraints) Performing minimization step: 3114. Total energy = 93.2597 kcal/mol (93.2551 without restraints) Performing minimization step: 3115. Total energy = 93.2202 kcal/mol (93.2155 without restraints) Performing minimization step: 3116. Total energy = 93.1807 kcal/mol (93.1760 without restraints) Performing minimization step: 3117. Total energy = 93.1412 kcal/mol (93.1365 without restraints) Performing minimization step: 3118. Total energy = 93.1017 kcal/mol (93.0971 without restraints) Performing minimization step: 3119. Total energy = 93.0623 kcal/mol (93.0577 without restraints) Performing minimization step: 3120. Total energy = 93.0229 kcal/mol (93.0183 without restraints) Performing minimization step: 3121. Total energy = 92.9836 kcal/mol (92.9790 without restraints) Performing minimization step: 3122. Total energy = 92.9443 kcal/mol (92.9396 without restraints) Performing minimization step: 3123. Total energy = 92.9050 kcal/mol (92.9004 without restraints) Performing minimization step: 3124. Total energy = 92.8658 kcal/mol (92.8611 without restraints) Performing minimization step: 3125. Total energy = 92.8266 kcal/mol (92.8219 without restraints) Performing minimization step: 3126. Total energy = 92.7874 kcal/mol (92.7828 without restraints) Performing minimization step: 3127. Total energy = 92.7483 kcal/mol (92.7436 without restraints) Performing minimization step: 3128. Total energy = 92.7091 kcal/mol (92.7045 without restraints) Performing minimization step: 3129. Total energy = 92.6701 kcal/mol (92.6655 without restraints) Performing minimization step: 3130. Total energy = 92.6310 kcal/mol (92.6264 without restraints) Performing minimization step: 3131. Total energy = 92.5920 kcal/mol (92.5874 without restraints) Performing minimization step: 3132. Total energy = 92.5531 kcal/mol (92.5485 without restraints) Performing minimization step: 3133. Total energy = 92.5141 kcal/mol (92.5095 without restraints) Performing minimization step: 3134. Total energy = 92.4752 kcal/mol (92.4707 without restraints) Performing minimization step: 3135. Total energy = 92.4364 kcal/mol (92.4318 without restraints) Performing minimization step: 3136. Total energy = 92.3975 kcal/mol (92.3930 without restraints) Performing minimization step: 3137. Total energy = 92.3588 kcal/mol (92.3542 without restraints) Performing minimization step: 3138. Total energy = 92.3200 kcal/mol (92.3154 without restraints) Performing minimization step: 3139. Total energy = 92.2813 kcal/mol (92.2767 without restraints) Performing minimization step: 3140. Total energy = 92.2426 kcal/mol (92.2380 without restraints) Performing minimization step: 3141. Total energy = 92.2039 kcal/mol (92.1993 without restraints) Performing minimization step: 3142. Total energy = 92.1653 kcal/mol (92.1607 without restraints) Performing minimization step: 3143. Total energy = 92.1267 kcal/mol (92.1222 without restraints) Performing minimization step: 3144. Total energy = 92.0882 kcal/mol (92.0836 without restraints) Performing minimization step: 3145. Total energy = 92.0496 kcal/mol (92.0451 without restraints) Performing minimization step: 3146. Total energy = 92.0111 kcal/mol (92.0066 without restraints) Performing minimization step: 3147. Total energy = 91.9727 kcal/mol (91.9681 without restraints) Performing minimization step: 3148. Total energy = 91.9343 kcal/mol (91.9297 without restraints) Performing minimization step: 3149. Total energy = 91.8959 kcal/mol (91.8913 without restraints) Performing minimization step: 3150. Total energy = 91.8575 kcal/mol (91.8530 without restraints) Performing minimization step: 3151. Total energy = 91.8192 kcal/mol (91.8147 without restraints) Performing minimization step: 3152. Total energy = 91.7809 kcal/mol (91.7764 without restraints) Performing minimization step: 3153. Total energy = 91.7426 kcal/mol (91.7381 without restraints) Performing minimization step: 3154. Total energy = 91.7044 kcal/mol (91.6999 without restraints) Performing minimization step: 3155. Total energy = 91.6662 kcal/mol (91.6617 without restraints) Performing minimization step: 3156. Total energy = 91.6280 kcal/mol (91.6235 without restraints) Performing minimization step: 3157. Total energy = 91.5899 kcal/mol (91.5854 without restraints) Performing minimization step: 3158. Total energy = 91.5518 kcal/mol (91.5473 without restraints) Performing minimization step: 3159. Total energy = 91.5138 kcal/mol (91.5093 without restraints) Performing minimization step: 3160. Total energy = 91.4757 kcal/mol (91.4713 without restraints) Performing minimization step: 3161. Total energy = 91.4377 kcal/mol (91.4333 without restraints) Performing minimization step: 3162. Total energy = 91.3998 kcal/mol (91.3953 without restraints) Performing minimization step: 3163. Total energy = 91.3619 kcal/mol (91.3574 without restraints) Performing minimization step: 3164. Total energy = 91.3240 kcal/mol (91.3195 without restraints) Performing minimization step: 3165. Total energy = 91.2861 kcal/mol (91.2816 without restraints) Performing minimization step: 3166. Total energy = 91.2483 kcal/mol (91.2438 without restraints) Performing minimization step: 3167. Total energy = 91.2105 kcal/mol (91.2060 without restraints) Performing minimization step: 3168. Total energy = 91.1727 kcal/mol (91.1682 without restraints) Performing minimization step: 3169. Total energy = 91.1350 kcal/mol (91.1305 without restraints) Performing minimization step: 3170. Total energy = 91.0973 kcal/mol (91.0928 without restraints) Performing minimization step: 3171. Total energy = 91.0596 kcal/mol (91.0551 without restraints) Performing minimization step: 3172. Total energy = 91.0220 kcal/mol (91.0175 without restraints) Performing minimization step: 3173. Total energy = 90.9844 kcal/mol (90.9799 without restraints) Performing minimization step: 3174. Total energy = 90.9468 kcal/mol (90.9423 without restraints) Performing minimization step: 3175. Total energy = 90.9092 kcal/mol (90.9048 without restraints) Performing minimization step: 3176. Total energy = 90.8717 kcal/mol (90.8673 without restraints) Performing minimization step: 3177. Total energy = 90.8343 kcal/mol (90.8298 without restraints) Performing minimization step: 3178. Total energy = 90.7968 kcal/mol (90.7924 without restraints) Performing minimization step: 3179. Total energy = 90.7594 kcal/mol (90.7550 without restraints) Performing minimization step: 3180. Total energy = 90.7220 kcal/mol (90.7176 without restraints) Performing minimization step: 3181. Total energy = 90.6847 kcal/mol (90.6803 without restraints) Performing minimization step: 3182. Total energy = 90.6474 kcal/mol (90.6430 without restraints) Performing minimization step: 3183. Total energy = 90.6101 kcal/mol (90.6057 without restraints) Performing minimization step: 3184. Total energy = 90.5728 kcal/mol (90.5684 without restraints) Performing minimization step: 3185. Total energy = 90.5356 kcal/mol (90.5312 without restraints) Performing minimization step: 3186. Total energy = 90.4984 kcal/mol (90.4940 without restraints) Performing minimization step: 3187. Total energy = 90.4613 kcal/mol (90.4569 without restraints) Performing minimization step: 3188. Total energy = 90.4242 kcal/mol (90.4198 without restraints) Performing minimization step: 3189. Total energy = 90.3871 kcal/mol (90.3827 without restraints) Performing minimization step: 3190. Total energy = 90.3500 kcal/mol (90.3456 without restraints) Performing minimization step: 3191. Total energy = 90.3130 kcal/mol (90.3086 without restraints) Performing minimization step: 3192. Total energy = 90.2760 kcal/mol (90.2716 without restraints) Performing minimization step: 3193. Total energy = 90.2390 kcal/mol (90.2347 without restraints) Performing minimization step: 3194. Total energy = 90.2021 kcal/mol (90.1977 without restraints) Performing minimization step: 3195. Total energy = 90.1652 kcal/mol (90.1608 without restraints) Performing minimization step: 3196. Total energy = 90.1283 kcal/mol (90.1240 without restraints) Performing minimization step: 3197. Total energy = 90.0915 kcal/mol (90.0871 without restraints) Performing minimization step: 3198. Total energy = 90.0547 kcal/mol (90.0503 without restraints) Performing minimization step: 3199. Total energy = 90.0179 kcal/mol (90.0135 without restraints) Performing minimization step: 3200. Total energy = 89.9811 kcal/mol (89.9768 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 89.9444 kcal/mol (89.9401 without restraints) Performing minimization step: 3202. Total energy = 89.9077 kcal/mol (89.9034 without restraints) Performing minimization step: 3203. Total energy = 89.8711 kcal/mol (89.8668 without restraints) Performing minimization step: 3204. Total energy = 89.8345 kcal/mol (89.8301 without restraints) Performing minimization step: 3205. Total energy = 89.7979 kcal/mol (89.7936 without restraints) Performing minimization step: 3206. Total energy = 89.7613 kcal/mol (89.7570 without restraints) Performing minimization step: 3207. Total energy = 89.7248 kcal/mol (89.7205 without restraints) Performing minimization step: 3208. Total energy = 89.6883 kcal/mol (89.6840 without restraints) Performing minimization step: 3209. Total energy = 89.6518 kcal/mol (89.6475 without restraints) Performing minimization step: 3210. Total energy = 89.6154 kcal/mol (89.6111 without restraints) Performing minimization step: 3211. Total energy = 89.5790 kcal/mol (89.5747 without restraints) Performing minimization step: 3212. Total energy = 89.5426 kcal/mol (89.5383 without restraints) Performing minimization step: 3213. Total energy = 89.5063 kcal/mol (89.5020 without restraints) Performing minimization step: 3214. Total energy = 89.4700 kcal/mol (89.4657 without restraints) Performing minimization step: 3215. Total energy = 89.4337 kcal/mol (89.4294 without restraints) Performing minimization step: 3216. Total energy = 89.3974 kcal/mol (89.3932 without restraints) Performing minimization step: 3217. Total energy = 89.3612 kcal/mol (89.3569 without restraints) Performing minimization step: 3218. Total energy = 89.3250 kcal/mol (89.3208 without restraints) Performing minimization step: 3219. Total energy = 89.2889 kcal/mol (89.2846 without restraints) Performing minimization step: 3220. Total energy = 89.2527 kcal/mol (89.2485 without restraints) Performing minimization step: 3221. Total energy = 89.2166 kcal/mol (89.2124 without restraints) Performing minimization step: 3222. Total energy = 89.1806 kcal/mol (89.1763 without restraints) Performing minimization step: 3223. Total energy = 89.1445 kcal/mol (89.1403 without restraints) Performing minimization step: 3224. Total energy = 89.1085 kcal/mol (89.1043 without restraints) Performing minimization step: 3225. Total energy = 89.0726 kcal/mol (89.0683 without restraints) Performing minimization step: 3226. Total energy = 89.0366 kcal/mol (89.0324 without restraints) Performing minimization step: 3227. Total energy = 89.0007 kcal/mol (88.9964 without restraints) Performing minimization step: 3228. Total energy = 88.9648 kcal/mol (88.9606 without restraints) Performing minimization step: 3229. Total energy = 88.9289 kcal/mol (88.9247 without restraints) Performing minimization step: 3230. Total energy = 88.8931 kcal/mol (88.8889 without restraints) Performing minimization step: 3231. Total energy = 88.8573 kcal/mol (88.8531 without restraints) Performing minimization step: 3232. Total energy = 88.8216 kcal/mol (88.8173 without restraints) Performing minimization step: 3233. Total energy = 88.7858 kcal/mol (88.7816 without restraints) Performing minimization step: 3234. Total energy = 88.7501 kcal/mol (88.7459 without restraints) Performing minimization step: 3235. Total energy = 88.7144 kcal/mol (88.7102 without restraints) Performing minimization step: 3236. Total energy = 88.6788 kcal/mol (88.6746 without restraints) Performing minimization step: 3237. Total energy = 88.6432 kcal/mol (88.6390 without restraints) Performing minimization step: 3238. Total energy = 88.6076 kcal/mol (88.6034 without restraints) Performing minimization step: 3239. Total energy = 88.5720 kcal/mol (88.5678 without restraints) Performing minimization step: 3240. Total energy = 88.5365 kcal/mol (88.5323 without restraints) Performing minimization step: 3241. Total energy = 88.5010 kcal/mol (88.4968 without restraints) Performing minimization step: 3242. Total energy = 88.4655 kcal/mol (88.4613 without restraints) Performing minimization step: 3243. Total energy = 88.4301 kcal/mol (88.4259 without restraints) Performing minimization step: 3244. Total energy = 88.3947 kcal/mol (88.3905 without restraints) Performing minimization step: 3245. Total energy = 88.3593 kcal/mol (88.3551 without restraints) Performing minimization step: 3246. Total energy = 88.3240 kcal/mol (88.3198 without restraints) Performing minimization step: 3247. Total energy = 88.2886 kcal/mol (88.2845 without restraints) Performing minimization step: 3248. Total energy = 88.2533 kcal/mol (88.2492 without restraints) Performing minimization step: 3249. Total energy = 88.2181 kcal/mol (88.2139 without restraints) Performing minimization step: 3250. Total energy = 88.1828 kcal/mol (88.1787 without restraints) Performing minimization step: 3251. Total energy = 88.1476 kcal/mol (88.1435 without restraints) Performing minimization step: 3252. Total energy = 88.1125 kcal/mol (88.1083 without restraints) Performing minimization step: 3253. Total energy = 88.0773 kcal/mol (88.0732 without restraints) Performing minimization step: 3254. Total energy = 88.0422 kcal/mol (88.0381 without restraints) Performing minimization step: 3255. Total energy = 88.0071 kcal/mol (88.0030 without restraints) Performing minimization step: 3256. Total energy = 87.9721 kcal/mol (87.9679 without restraints) Performing minimization step: 3257. Total energy = 87.9370 kcal/mol (87.9329 without restraints) Performing minimization step: 3258. Total energy = 87.9020 kcal/mol (87.8979 without restraints) Performing minimization step: 3259. Total energy = 87.8671 kcal/mol (87.8629 without restraints) Performing minimization step: 3260. Total energy = 87.8321 kcal/mol (87.8280 without restraints) Performing minimization step: 3261. Total energy = 87.7972 kcal/mol (87.7931 without restraints) Performing minimization step: 3262. Total energy = 87.7623 kcal/mol (87.7582 without restraints) Performing minimization step: 3263. Total energy = 87.7275 kcal/mol (87.7233 without restraints) Performing minimization step: 3264. Total energy = 87.6926 kcal/mol (87.6885 without restraints) Performing minimization step: 3265. Total energy = 87.6578 kcal/mol (87.6537 without restraints) Performing minimization step: 3266. Total energy = 87.6231 kcal/mol (87.6190 without restraints) Performing minimization step: 3267. Total energy = 87.5883 kcal/mol (87.5842 without restraints) Performing minimization step: 3268. Total energy = 87.5536 kcal/mol (87.5495 without restraints) Performing minimization step: 3269. Total energy = 87.5189 kcal/mol (87.5148 without restraints) Performing minimization step: 3270. Total energy = 87.4843 kcal/mol (87.4802 without restraints) Performing minimization step: 3271. Total energy = 87.4496 kcal/mol (87.4456 without restraints) Performing minimization step: 3272. Total energy = 87.4151 kcal/mol (87.4110 without restraints) Performing minimization step: 3273. Total energy = 87.3805 kcal/mol (87.3764 without restraints) Performing minimization step: 3274. Total energy = 87.3459 kcal/mol (87.3419 without restraints) Performing minimization step: 3275. Total energy = 87.3114 kcal/mol (87.3074 without restraints) Performing minimization step: 3276. Total energy = 87.2769 kcal/mol (87.2729 without restraints) Performing minimization step: 3277. Total energy = 87.2425 kcal/mol (87.2384 without restraints) Performing minimization step: 3278. Total energy = 87.2081 kcal/mol (87.2040 without restraints) Performing minimization step: 3279. Total energy = 87.1737 kcal/mol (87.1696 without restraints) Performing minimization step: 3280. Total energy = 87.1393 kcal/mol (87.1352 without restraints) Performing minimization step: 3281. Total energy = 87.1049 kcal/mol (87.1009 without restraints) Performing minimization step: 3282. Total energy = 87.0706 kcal/mol (87.0666 without restraints) Performing minimization step: 3283. Total energy = 87.0363 kcal/mol (87.0323 without restraints) Performing minimization step: 3284. Total energy = 87.0021 kcal/mol (86.9980 without restraints) Performing minimization step: 3285. Total energy = 86.9679 kcal/mol (86.9638 without restraints) Performing minimization step: 3286. Total energy = 86.9337 kcal/mol (86.9296 without restraints) Performing minimization step: 3287. Total energy = 86.8995 kcal/mol (86.8954 without restraints) Performing minimization step: 3288. Total energy = 86.8653 kcal/mol (86.8613 without restraints) Performing minimization step: 3289. Total energy = 86.8312 kcal/mol (86.8272 without restraints) Performing minimization step: 3290. Total energy = 86.7971 kcal/mol (86.7931 without restraints) Performing minimization step: 3291. Total energy = 86.7631 kcal/mol (86.7590 without restraints) Performing minimization step: 3292. Total energy = 86.7290 kcal/mol (86.7250 without restraints) Performing minimization step: 3293. Total energy = 86.6950 kcal/mol (86.6910 without restraints) Performing minimization step: 3294. Total energy = 86.6610 kcal/mol (86.6570 without restraints) Performing minimization step: 3295. Total energy = 86.6271 kcal/mol (86.6231 without restraints) Performing minimization step: 3296. Total energy = 86.5932 kcal/mol (86.5892 without restraints) Performing minimization step: 3297. Total energy = 86.5593 kcal/mol (86.5553 without restraints) Performing minimization step: 3298. Total energy = 86.5254 kcal/mol (86.5214 without restraints) Performing minimization step: 3299. Total energy = 86.4916 kcal/mol (86.4876 without restraints) Performing minimization step: 3300. Total energy = 86.4577 kcal/mol (86.4538 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 86.4240 kcal/mol (86.4200 without restraints) Performing minimization step: 3302. Total energy = 86.3902 kcal/mol (86.3862 without restraints) Performing minimization step: 3303. Total energy = 86.3565 kcal/mol (86.3525 without restraints) Performing minimization step: 3304. Total energy = 86.3228 kcal/mol (86.3188 without restraints) Performing minimization step: 3305. Total energy = 86.2891 kcal/mol (86.2851 without restraints) Performing minimization step: 3306. Total energy = 86.2554 kcal/mol (86.2515 without restraints) Performing minimization step: 3307. Total energy = 86.2218 kcal/mol (86.2178 without restraints) Performing minimization step: 3308. Total energy = 86.1882 kcal/mol (86.1843 without restraints) Performing minimization step: 3309. Total energy = 86.1546 kcal/mol (86.1507 without restraints) Performing minimization step: 3310. Total energy = 86.1211 kcal/mol (86.1171 without restraints) Performing minimization step: 3311. Total energy = 86.0876 kcal/mol (86.0836 without restraints) Performing minimization step: 3312. Total energy = 86.0541 kcal/mol (86.0502 without restraints) Performing minimization step: 3313. Total energy = 86.0206 kcal/mol (86.0167 without restraints) Performing minimization step: 3314. Total energy = 85.9872 kcal/mol (85.9833 without restraints) Performing minimization step: 3315. Total energy = 85.9538 kcal/mol (85.9499 without restraints) Performing minimization step: 3316. Total energy = 85.9204 kcal/mol (85.9165 without restraints) Performing minimization step: 3317. Total energy = 85.8871 kcal/mol (85.8831 without restraints) Performing minimization step: 3318. Total energy = 85.8538 kcal/mol (85.8498 without restraints) Performing minimization step: 3319. Total energy = 85.8205 kcal/mol (85.8165 without restraints) Performing minimization step: 3320. Total energy = 85.7872 kcal/mol (85.7833 without restraints) Performing minimization step: 3321. Total energy = 85.7539 kcal/mol (85.7500 without restraints) Performing minimization step: 3322. Total energy = 85.7207 kcal/mol (85.7168 without restraints) Performing minimization step: 3323. Total energy = 85.6875 kcal/mol (85.6836 without restraints) Performing minimization step: 3324. Total energy = 85.6544 kcal/mol (85.6505 without restraints) Performing minimization step: 3325. Total energy = 85.6212 kcal/mol (85.6173 without restraints) Performing minimization step: 3326. Total energy = 85.5881 kcal/mol (85.5842 without restraints) Performing minimization step: 3327. Total energy = 85.5550 kcal/mol (85.5511 without restraints) Performing minimization step: 3328. Total energy = 85.5220 kcal/mol (85.5181 without restraints) Performing minimization step: 3329. Total energy = 85.4890 kcal/mol (85.4851 without restraints) Performing minimization step: 3330. Total energy = 85.4559 kcal/mol (85.4521 without restraints) Performing minimization step: 3331. Total energy = 85.4230 kcal/mol (85.4191 without restraints) Performing minimization step: 3332. Total energy = 85.3900 kcal/mol (85.3861 without restraints) Performing minimization step: 3333. Total energy = 85.3571 kcal/mol (85.3532 without restraints) Performing minimization step: 3334. Total energy = 85.3242 kcal/mol (85.3203 without restraints) Performing minimization step: 3335. Total energy = 85.2913 kcal/mol (85.2874 without restraints) Performing minimization step: 3336. Total energy = 85.2585 kcal/mol (85.2546 without restraints) Performing minimization step: 3337. Total energy = 85.2257 kcal/mol (85.2218 without restraints) Performing minimization step: 3338. Total energy = 85.1929 kcal/mol (85.1890 without restraints) Performing minimization step: 3339. Total energy = 85.1601 kcal/mol (85.1562 without restraints) Performing minimization step: 3340. Total energy = 85.1274 kcal/mol (85.1235 without restraints) Performing minimization step: 3341. Total energy = 85.0946 kcal/mol (85.0908 without restraints) Performing minimization step: 3342. Total energy = 85.0620 kcal/mol (85.0581 without restraints) Performing minimization step: 3343. Total energy = 85.0293 kcal/mol (85.0254 without restraints) Performing minimization step: 3344. Total energy = 84.9967 kcal/mol (84.9928 without restraints) Performing minimization step: 3345. Total energy = 84.9640 kcal/mol (84.9602 without restraints) Performing minimization step: 3346. Total energy = 84.9315 kcal/mol (84.9276 without restraints) Performing minimization step: 3347. Total energy = 84.8989 kcal/mol (84.8951 without restraints) Performing minimization step: 3348. Total energy = 84.8664 kcal/mol (84.8625 without restraints) Performing minimization step: 3349. Total energy = 84.8339 kcal/mol (84.8300 without restraints) Performing minimization step: 3350. Total energy = 84.8014 kcal/mol (84.7976 without restraints) Performing minimization step: 3351. Total energy = 84.7689 kcal/mol (84.7651 without restraints) Performing minimization step: 3352. Total energy = 84.7365 kcal/mol (84.7327 without restraints) Performing minimization step: 3353. Total energy = 84.7041 kcal/mol (84.7003 without restraints) Performing minimization step: 3354. Total energy = 84.6717 kcal/mol (84.6679 without restraints) Performing minimization step: 3355. Total energy = 84.6394 kcal/mol (84.6356 without restraints) Performing minimization step: 3356. Total energy = 84.6070 kcal/mol (84.6032 without restraints) Performing minimization step: 3357. Total energy = 84.5747 kcal/mol (84.5709 without restraints) Performing minimization step: 3358. Total energy = 84.5425 kcal/mol (84.5387 without restraints) Performing minimization step: 3359. Total energy = 84.5102 kcal/mol (84.5064 without restraints) Performing minimization step: 3360. Total energy = 84.4780 kcal/mol (84.4742 without restraints) Performing minimization step: 3361. Total energy = 84.4458 kcal/mol (84.4420 without restraints) Performing minimization step: 3362. Total energy = 84.4136 kcal/mol (84.4098 without restraints) Performing minimization step: 3363. Total energy = 84.3815 kcal/mol (84.3777 without restraints) Performing minimization step: 3364. Total energy = 84.3494 kcal/mol (84.3456 without restraints) Performing minimization step: 3365. Total energy = 84.3173 kcal/mol (84.3135 without restraints) Performing minimization step: 3366. Total energy = 84.2852 kcal/mol (84.2814 without restraints) Performing minimization step: 3367. Total energy = 84.2531 kcal/mol (84.2494 without restraints) Performing minimization step: 3368. Total energy = 84.2211 kcal/mol (84.2173 without restraints) Performing minimization step: 3369. Total energy = 84.1891 kcal/mol (84.1854 without restraints) Performing minimization step: 3370. Total energy = 84.1572 kcal/mol (84.1534 without restraints) Performing minimization step: 3371. Total energy = 84.1252 kcal/mol (84.1214 without restraints) Performing minimization step: 3372. Total energy = 84.0933 kcal/mol (84.0895 without restraints) Performing minimization step: 3373. Total energy = 84.0614 kcal/mol (84.0576 without restraints) Performing minimization step: 3374. Total energy = 84.0295 kcal/mol (84.0258 without restraints) Performing minimization step: 3375. Total energy = 83.9977 kcal/mol (83.9939 without restraints) Performing minimization step: 3376. Total energy = 83.9659 kcal/mol (83.9621 without restraints) Performing minimization step: 3377. Total energy = 83.9341 kcal/mol (83.9303 without restraints) Performing minimization step: 3378. Total energy = 83.9023 kcal/mol (83.8986 without restraints) Performing minimization step: 3379. Total energy = 83.8706 kcal/mol (83.8668 without restraints) Performing minimization step: 3380. Total energy = 83.8388 kcal/mol (83.8351 without restraints) Performing minimization step: 3381. Total energy = 83.8071 kcal/mol (83.8034 without restraints) Performing minimization step: 3382. Total energy = 83.7755 kcal/mol (83.7717 without restraints) Performing minimization step: 3383. Total energy = 83.7438 kcal/mol (83.7401 without restraints) Performing minimization step: 3384. Total energy = 83.7122 kcal/mol (83.7085 without restraints) Performing minimization step: 3385. Total energy = 83.6806 kcal/mol (83.6769 without restraints) Performing minimization step: 3386. Total energy = 83.6491 kcal/mol (83.6453 without restraints) Performing minimization step: 3387. Total energy = 83.6175 kcal/mol (83.6138 without restraints) Performing minimization step: 3388. Total energy = 83.5860 kcal/mol (83.5823 without restraints) Performing minimization step: 3389. Total energy = 83.5545 kcal/mol (83.5508 without restraints) Performing minimization step: 3390. Total energy = 83.5230 kcal/mol (83.5193 without restraints) Performing minimization step: 3391. Total energy = 83.4916 kcal/mol (83.4879 without restraints) Performing minimization step: 3392. Total energy = 83.4601 kcal/mol (83.4564 without restraints) Performing minimization step: 3393. Total energy = 83.4288 kcal/mol (83.4250 without restraints) Performing minimization step: 3394. Total energy = 83.3974 kcal/mol (83.3937 without restraints) Performing minimization step: 3395. Total energy = 83.3660 kcal/mol (83.3623 without restraints) Performing minimization step: 3396. Total energy = 83.3347 kcal/mol (83.3310 without restraints) Performing minimization step: 3397. Total energy = 83.3034 kcal/mol (83.2997 without restraints) Performing minimization step: 3398. Total energy = 83.2721 kcal/mol (83.2684 without restraints) Performing minimization step: 3399. Total energy = 83.2409 kcal/mol (83.2372 without restraints) Performing minimization step: 3400. Total energy = 83.2097 kcal/mol (83.2060 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 83.1785 kcal/mol (83.1748 without restraints) Performing minimization step: 3402. Total energy = 83.1473 kcal/mol (83.1436 without restraints) Performing minimization step: 3403. Total energy = 83.1161 kcal/mol (83.1124 without restraints) Performing minimization step: 3404. Total energy = 83.0850 kcal/mol (83.0813 without restraints) Performing minimization step: 3405. Total energy = 83.0539 kcal/mol (83.0502 without restraints) Performing minimization step: 3406. Total energy = 83.0230 kcal/mol (83.0193 without restraints) Performing minimization step: 3407. Total energy = 82.9920 kcal/mol (82.9883 without restraints) Performing minimization step: 3408. Total energy = 82.9609 kcal/mol (82.9573 without restraints) Performing minimization step: 3409. Total energy = 82.9299 kcal/mol (82.9263 without restraints) Performing minimization step: 3410. Total energy = 82.8989 kcal/mol (82.8953 without restraints) Performing minimization step: 3411. Total energy = 82.8680 kcal/mol (82.8643 without restraints) Performing minimization step: 3412. Total energy = 82.8370 kcal/mol (82.8334 without restraints) Performing minimization step: 3413. Total energy = 82.8061 kcal/mol (82.8025 without restraints) Performing minimization step: 3414. Total energy = 82.7752 kcal/mol (82.7716 without restraints) Performing minimization step: 3415. Total energy = 82.7444 kcal/mol (82.7407 without restraints) Performing minimization step: 3416. Total energy = 82.7135 kcal/mol (82.7099 without restraints) Performing minimization step: 3417. Total energy = 82.6827 kcal/mol (82.6791 without restraints) Performing minimization step: 3418. Total energy = 82.6519 kcal/mol (82.6483 without restraints) Performing minimization step: 3419. Total energy = 82.6211 kcal/mol (82.6175 without restraints) Performing minimization step: 3420. Total energy = 82.5904 kcal/mol (82.5868 without restraints) Performing minimization step: 3421. Total energy = 82.5597 kcal/mol (82.5561 without restraints) Performing minimization step: 3422. Total energy = 82.5290 kcal/mol (82.5254 without restraints) Performing minimization step: 3423. Total energy = 82.4983 kcal/mol (82.4947 without restraints) Performing minimization step: 3424. Total energy = 82.4677 kcal/mol (82.4640 without restraints) Performing minimization step: 3425. Total energy = 82.4370 kcal/mol (82.4334 without restraints) Performing minimization step: 3426. Total energy = 82.4064 kcal/mol (82.4028 without restraints) Performing minimization step: 3427. Total energy = 82.3759 kcal/mol (82.3722 without restraints) Performing minimization step: 3428. Total energy = 82.3453 kcal/mol (82.3417 without restraints) Performing minimization step: 3429. Total energy = 82.3148 kcal/mol (82.3112 without restraints) Performing minimization step: 3430. Total energy = 82.2843 kcal/mol (82.2807 without restraints) Performing minimization step: 3431. Total energy = 82.2538 kcal/mol (82.2502 without restraints) Performing minimization step: 3432. Total energy = 82.2233 kcal/mol (82.2197 without restraints) Performing minimization step: 3433. Total energy = 82.1929 kcal/mol (82.1893 without restraints) Performing minimization step: 3434. Total energy = 82.1625 kcal/mol (82.1589 without restraints) Performing minimization step: 3435. Total energy = 82.1321 kcal/mol (82.1285 without restraints) Performing minimization step: 3436. Total energy = 82.1017 kcal/mol (82.0981 without restraints) Performing minimization step: 3437. Total energy = 82.0713 kcal/mol (82.0678 without restraints) Performing minimization step: 3438. Total energy = 82.0410 kcal/mol (82.0375 without restraints) Performing minimization step: 3439. Total energy = 82.0107 kcal/mol (82.0072 without restraints) Performing minimization step: 3440. Total energy = 81.9805 kcal/mol (81.9769 without restraints) Performing minimization step: 3441. Total energy = 81.9502 kcal/mol (81.9466 without restraints) Performing minimization step: 3442. Total energy = 81.9200 kcal/mol (81.9164 without restraints) Performing minimization step: 3443. Total energy = 81.8898 kcal/mol (81.8862 without restraints) Performing minimization step: 3444. Total energy = 81.8596 kcal/mol (81.8560 without restraints) Performing minimization step: 3445. Total energy = 81.8294 kcal/mol (81.8259 without restraints) Performing minimization step: 3446. Total energy = 81.7993 kcal/mol (81.7957 without restraints) Performing minimization step: 3447. Total energy = 81.7692 kcal/mol (81.7656 without restraints) Performing minimization step: 3448. Total energy = 81.7391 kcal/mol (81.7355 without restraints) Performing minimization step: 3449. Total energy = 81.7090 kcal/mol (81.7055 without restraints) Performing minimization step: 3450. Total energy = 81.6790 kcal/mol (81.6754 without restraints) Performing minimization step: 3451. Total energy = 81.6490 kcal/mol (81.6454 without restraints) Performing minimization step: 3452. Total energy = 81.6190 kcal/mol (81.6154 without restraints) Performing minimization step: 3453. Total energy = 81.5890 kcal/mol (81.5854 without restraints) Performing minimization step: 3454. Total energy = 81.5590 kcal/mol (81.5555 without restraints) Performing minimization step: 3455. Total energy = 81.5291 kcal/mol (81.5256 without restraints) Performing minimization step: 3456. Total energy = 81.4992 kcal/mol (81.4957 without restraints) Performing minimization step: 3457. Total energy = 81.4693 kcal/mol (81.4658 without restraints) Performing minimization step: 3458. Total energy = 81.4394 kcal/mol (81.4359 without restraints) Performing minimization step: 3459. Total energy = 81.4096 kcal/mol (81.4061 without restraints) Performing minimization step: 3460. Total energy = 81.3798 kcal/mol (81.3763 without restraints) Performing minimization step: 3461. Total energy = 81.3500 kcal/mol (81.3465 without restraints) Performing minimization step: 3462. Total energy = 81.3202 kcal/mol (81.3167 without restraints) Performing minimization step: 3463. Total energy = 81.2905 kcal/mol (81.2870 without restraints) Performing minimization step: 3464. Total energy = 81.2607 kcal/mol (81.2572 without restraints) Performing minimization step: 3465. Total energy = 81.2310 kcal/mol (81.2275 without restraints) Performing minimization step: 3466. Total energy = 81.2014 kcal/mol (81.1979 without restraints) Performing minimization step: 3467. Total energy = 81.1717 kcal/mol (81.1682 without restraints) Performing minimization step: 3468. Total energy = 81.1421 kcal/mol (81.1386 without restraints) Performing minimization step: 3469. Total energy = 81.1125 kcal/mol (81.1090 without restraints) Performing minimization step: 3470. Total energy = 81.0829 kcal/mol (81.0794 without restraints) Performing minimization step: 3471. Total energy = 81.0533 kcal/mol (81.0498 without restraints) Performing minimization step: 3472. Total energy = 81.0238 kcal/mol (81.0203 without restraints) Performing minimization step: 3473. Total energy = 80.9942 kcal/mol (80.9907 without restraints) Performing minimization step: 3474. Total energy = 80.9647 kcal/mol (80.9612 without restraints) Performing minimization step: 3475. Total energy = 80.9352 kcal/mol (80.9318 without restraints) Performing minimization step: 3476. Total energy = 80.9058 kcal/mol (80.9023 without restraints) Performing minimization step: 3477. Total energy = 80.8764 kcal/mol (80.8729 without restraints) Performing minimization step: 3478. Total energy = 80.8469 kcal/mol (80.8435 without restraints) Performing minimization step: 3479. Total energy = 80.8176 kcal/mol (80.8141 without restraints) Performing minimization step: 3480. Total energy = 80.7882 kcal/mol (80.7847 without restraints) Performing minimization step: 3481. Total energy = 80.7588 kcal/mol (80.7554 without restraints) Performing minimization step: 3482. Total energy = 80.7295 kcal/mol (80.7261 without restraints) Performing minimization step: 3483. Total energy = 80.7002 kcal/mol (80.6968 without restraints) Performing minimization step: 3484. Total energy = 80.6709 kcal/mol (80.6675 without restraints) Performing minimization step: 3485. Total energy = 80.6417 kcal/mol (80.6382 without restraints) Performing minimization step: 3486. Total energy = 80.6124 kcal/mol (80.6090 without restraints) Performing minimization step: 3487. Total energy = 80.5832 kcal/mol (80.5798 without restraints) Performing minimization step: 3488. Total energy = 80.5540 kcal/mol (80.5506 without restraints) Performing minimization step: 3489. Total energy = 80.5249 kcal/mol (80.5214 without restraints) Performing minimization step: 3490. Total energy = 80.4957 kcal/mol (80.4923 without restraints) Performing minimization step: 3491. Total energy = 80.4666 kcal/mol (80.4632 without restraints) Performing minimization step: 3492. Total energy = 80.4375 kcal/mol (80.4341 without restraints) Performing minimization step: 3493. Total energy = 80.4084 kcal/mol (80.4050 without restraints) Performing minimization step: 3494. Total energy = 80.3793 kcal/mol (80.3759 without restraints) Performing minimization step: 3495. Total energy = 80.3503 kcal/mol (80.3469 without restraints) Performing minimization step: 3496. Total energy = 80.3213 kcal/mol (80.3179 without restraints) Performing minimization step: 3497. Total energy = 80.2923 kcal/mol (80.2889 without restraints) Performing minimization step: 3498. Total energy = 80.2633 kcal/mol (80.2599 without restraints) Performing minimization step: 3499. Total energy = 80.2344 kcal/mol (80.2310 without restraints) Performing minimization step: 3500. Total energy = 80.2055 kcal/mol (80.2020 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 80.1765 kcal/mol (80.1731 without restraints) Performing minimization step: 3502. Total energy = 80.1477 kcal/mol (80.1442 without restraints) Performing minimization step: 3503. Total energy = 80.1188 kcal/mol (80.1154 without restraints) Performing minimization step: 3504. Total energy = 80.0899 kcal/mol (80.0865 without restraints) Performing minimization step: 3505. Total energy = 80.0611 kcal/mol (80.0577 without restraints) Performing minimization step: 3506. Total energy = 80.0323 kcal/mol (80.0289 without restraints) Performing minimization step: 3507. Total energy = 80.0035 kcal/mol (80.0002 without restraints) Performing minimization step: 3508. Total energy = 79.9748 kcal/mol (79.9714 without restraints) Performing minimization step: 3509. Total energy = 79.9461 kcal/mol (79.9427 without restraints) Performing minimization step: 3510. Total energy = 79.9173 kcal/mol (79.9140 without restraints) Performing minimization step: 3511. Total energy = 79.8886 kcal/mol (79.8853 without restraints) Performing minimization step: 3512. Total energy = 79.8600 kcal/mol (79.8566 without restraints) Performing minimization step: 3513. Total energy = 79.8313 kcal/mol (79.8279 without restraints) Performing minimization step: 3514. Total energy = 79.8027 kcal/mol (79.7993 without restraints) Performing minimization step: 3515. Total energy = 79.7741 kcal/mol (79.7707 without restraints) Performing minimization step: 3516. Total energy = 79.7455 kcal/mol (79.7421 without restraints) Performing minimization step: 3517. Total energy = 79.7169 kcal/mol (79.7136 without restraints) Performing minimization step: 3518. Total energy = 79.6884 kcal/mol (79.6850 without restraints) Performing minimization step: 3519. Total energy = 79.6599 kcal/mol (79.6565 without restraints) Performing minimization step: 3520. Total energy = 79.6314 kcal/mol (79.6280 without restraints) Performing minimization step: 3521. Total energy = 79.6029 kcal/mol (79.5995 without restraints) Performing minimization step: 3522. Total energy = 79.5744 kcal/mol (79.5711 without restraints) Performing minimization step: 3523. Total energy = 79.5460 kcal/mol (79.5426 without restraints) Performing minimization step: 3524. Total energy = 79.5176 kcal/mol (79.5142 without restraints) Performing minimization step: 3525. Total energy = 79.4892 kcal/mol (79.4858 without restraints) Performing minimization step: 3526. Total energy = 79.4608 kcal/mol (79.4575 without restraints) Performing minimization step: 3527. Total energy = 79.4325 kcal/mol (79.4291 without restraints) Performing minimization step: 3528. Total energy = 79.4041 kcal/mol (79.4008 without restraints) Performing minimization step: 3529. Total energy = 79.3758 kcal/mol (79.3725 without restraints) Performing minimization step: 3530. Total energy = 79.3475 kcal/mol (79.3442 without restraints) Performing minimization step: 3531. Total energy = 79.3193 kcal/mol (79.3159 without restraints) Performing minimization step: 3532. Total energy = 79.2910 kcal/mol (79.2877 without restraints) Performing minimization step: 3533. Total energy = 79.2628 kcal/mol (79.2594 without restraints) Performing minimization step: 3534. Total energy = 79.2346 kcal/mol (79.2312 without restraints) Performing minimization step: 3535. Total energy = 79.2064 kcal/mol (79.2031 without restraints) Performing minimization step: 3536. Total energy = 79.1782 kcal/mol (79.1749 without restraints) Performing minimization step: 3537. Total energy = 79.1501 kcal/mol (79.1468 without restraints) Performing minimization step: 3538. Total energy = 79.1220 kcal/mol (79.1186 without restraints) Performing minimization step: 3539. Total energy = 79.0938 kcal/mol (79.0905 without restraints) Performing minimization step: 3540. Total energy = 79.0658 kcal/mol (79.0625 without restraints) Performing minimization step: 3541. Total energy = 79.0377 kcal/mol (79.0344 without restraints) Performing minimization step: 3542. Total energy = 79.0097 kcal/mol (79.0064 without restraints) Performing minimization step: 3543. Total energy = 78.9816 kcal/mol (78.9783 without restraints) Performing minimization step: 3544. Total energy = 78.9536 kcal/mol (78.9503 without restraints) Performing minimization step: 3545. Total energy = 78.9257 kcal/mol (78.9224 without restraints) Performing minimization step: 3546. Total energy = 78.8977 kcal/mol (78.8944 without restraints) Performing minimization step: 3547. Total energy = 78.8698 kcal/mol (78.8665 without restraints) Performing minimization step: 3548. Total energy = 78.8419 kcal/mol (78.8386 without restraints) Performing minimization step: 3549. Total energy = 78.8140 kcal/mol (78.8107 without restraints) Performing minimization step: 3550. Total energy = 78.7861 kcal/mol (78.7828 without restraints) Performing minimization step: 3551. Total energy = 78.7582 kcal/mol (78.7549 without restraints) Performing minimization step: 3552. Total energy = 78.7304 kcal/mol (78.7271 without restraints) Performing minimization step: 3553. Total energy = 78.7026 kcal/mol (78.6993 without restraints) Performing minimization step: 3554. Total energy = 78.6748 kcal/mol (78.6715 without restraints) Performing minimization step: 3555. Total energy = 78.6470 kcal/mol (78.6437 without restraints) Performing minimization step: 3556. Total energy = 78.6192 kcal/mol (78.6160 without restraints) Performing minimization step: 3557. Total energy = 78.5915 kcal/mol (78.5882 without restraints) Performing minimization step: 3558. Total energy = 78.5638 kcal/mol (78.5605 without restraints) Performing minimization step: 3559. Total energy = 78.5361 kcal/mol (78.5328 without restraints) Performing minimization step: 3560. Total energy = 78.5084 kcal/mol (78.5052 without restraints) Performing minimization step: 3561. Total energy = 78.4808 kcal/mol (78.4775 without restraints) Performing minimization step: 3562. Total energy = 78.4532 kcal/mol (78.4499 without restraints) Performing minimization step: 3563. Total energy = 78.4255 kcal/mol (78.4223 without restraints) Performing minimization step: 3564. Total energy = 78.3980 kcal/mol (78.3947 without restraints) Performing minimization step: 3565. Total energy = 78.3704 kcal/mol (78.3671 without restraints) Performing minimization step: 3566. Total energy = 78.3428 kcal/mol (78.3396 without restraints) Performing minimization step: 3567. Total energy = 78.3153 kcal/mol (78.3120 without restraints) Performing minimization step: 3568. Total energy = 78.2878 kcal/mol (78.2845 without restraints) Performing minimization step: 3569. Total energy = 78.2603 kcal/mol (78.2571 without restraints) Performing minimization step: 3570. Total energy = 78.2328 kcal/mol (78.2296 without restraints) Performing minimization step: 3571. Total energy = 78.2054 kcal/mol (78.2021 without restraints) Performing minimization step: 3572. Total energy = 78.1779 kcal/mol (78.1747 without restraints) Performing minimization step: 3573. Total energy = 78.1505 kcal/mol (78.1473 without restraints) Performing minimization step: 3574. Total energy = 78.1231 kcal/mol (78.1199 without restraints) Performing minimization step: 3575. Total energy = 78.0958 kcal/mol (78.0925 without restraints) Performing minimization step: 3576. Total energy = 78.0684 kcal/mol (78.0652 without restraints) Performing minimization step: 3577. Total energy = 78.0411 kcal/mol (78.0379 without restraints) Performing minimization step: 3578. Total energy = 78.0138 kcal/mol (78.0106 without restraints) Performing minimization step: 3579. Total energy = 77.9865 kcal/mol (77.9833 without restraints) Performing minimization step: 3580. Total energy = 77.9592 kcal/mol (77.9560 without restraints) Performing minimization step: 3581. Total energy = 77.9320 kcal/mol (77.9287 without restraints) Performing minimization step: 3582. Total energy = 77.9047 kcal/mol (77.9015 without restraints) Performing minimization step: 3583. Total energy = 77.8775 kcal/mol (77.8743 without restraints) Performing minimization step: 3584. Total energy = 77.8503 kcal/mol (77.8471 without restraints) Performing minimization step: 3585. Total energy = 77.8232 kcal/mol (77.8199 without restraints) Performing minimization step: 3586. Total energy = 77.7960 kcal/mol (77.7928 without restraints) Performing minimization step: 3587. Total energy = 77.7689 kcal/mol (77.7657 without restraints) Performing minimization step: 3588. Total energy = 77.7418 kcal/mol (77.7386 without restraints) Performing minimization step: 3589. Total energy = 77.7147 kcal/mol (77.7115 without restraints) Performing minimization step: 3590. Total energy = 77.6876 kcal/mol (77.6844 without restraints) Performing minimization step: 3591. Total energy = 77.6605 kcal/mol (77.6573 without restraints) Performing minimization step: 3592. Total energy = 77.6335 kcal/mol (77.6303 without restraints) Performing minimization step: 3593. Total energy = 77.6065 kcal/mol (77.6033 without restraints) Performing minimization step: 3594. Total energy = 77.5795 kcal/mol (77.5763 without restraints) Performing minimization step: 3595. Total energy = 77.5525 kcal/mol (77.5493 without restraints) Performing minimization step: 3596. Total energy = 77.5256 kcal/mol (77.5224 without restraints) Performing minimization step: 3597. Total energy = 77.4986 kcal/mol (77.4954 without restraints) Performing minimization step: 3598. Total energy = 77.4717 kcal/mol (77.4685 without restraints) Performing minimization step: 3599. Total energy = 77.4448 kcal/mol (77.4416 without restraints) Performing minimization step: 3600. Total energy = 77.4179 kcal/mol (77.4147 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 77.3911 kcal/mol (77.3879 without restraints) Performing minimization step: 3602. Total energy = 77.3642 kcal/mol (77.3611 without restraints) Performing minimization step: 3603. Total energy = 77.3374 kcal/mol (77.3342 without restraints) Performing minimization step: 3604. Total energy = 77.3106 kcal/mol (77.3074 without restraints) Performing minimization step: 3605. Total energy = 77.2838 kcal/mol (77.2807 without restraints) Performing minimization step: 3606. Total energy = 77.2571 kcal/mol (77.2539 without restraints) Performing minimization step: 3607. Total energy = 77.2303 kcal/mol (77.2272 without restraints) Performing minimization step: 3608. Total energy = 77.2036 kcal/mol (77.2004 without restraints) Performing minimization step: 3609. Total energy = 77.1769 kcal/mol (77.1737 without restraints) Performing minimization step: 3610. Total energy = 77.1502 kcal/mol (77.1470 without restraints) Performing minimization step: 3611. Total energy = 77.1235 kcal/mol (77.1204 without restraints) Performing minimization step: 3612. Total energy = 77.0969 kcal/mol (77.0937 without restraints) Performing minimization step: 3613. Total energy = 77.0703 kcal/mol (77.0671 without restraints) Performing minimization step: 3614. Total energy = 77.0436 kcal/mol (77.0405 without restraints) Performing minimization step: 3615. Total energy = 77.0171 kcal/mol (77.0139 without restraints) Performing minimization step: 3616. Total energy = 76.9905 kcal/mol (76.9873 without restraints) Performing minimization step: 3617. Total energy = 76.9639 kcal/mol (76.9608 without restraints) Performing minimization step: 3618. Total energy = 76.9374 kcal/mol (76.9343 without restraints) Performing minimization step: 3619. Total energy = 76.9109 kcal/mol (76.9078 without restraints) Performing minimization step: 3620. Total energy = 76.8844 kcal/mol (76.8813 without restraints) Performing minimization step: 3621. Total energy = 76.8579 kcal/mol (76.8548 without restraints) Performing minimization step: 3622. Total energy = 76.8315 kcal/mol (76.8283 without restraints) Performing minimization step: 3623. Total energy = 76.8050 kcal/mol (76.8019 without restraints) Performing minimization step: 3624. Total energy = 76.7786 kcal/mol (76.7755 without restraints) Performing minimization step: 3625. Total energy = 76.7522 kcal/mol (76.7491 without restraints) Performing minimization step: 3626. Total energy = 76.7258 kcal/mol (76.7227 without restraints) Performing minimization step: 3627. Total energy = 76.6995 kcal/mol (76.6963 without restraints) Performing minimization step: 3628. Total energy = 76.6731 kcal/mol (76.6700 without restraints) Performing minimization step: 3629. Total energy = 76.6468 kcal/mol (76.6437 without restraints) Performing minimization step: 3630. Total energy = 76.6205 kcal/mol (76.6174 without restraints) Performing minimization step: 3631. Total energy = 76.5942 kcal/mol (76.5911 without restraints) Performing minimization step: 3632. Total energy = 76.5679 kcal/mol (76.5648 without restraints) Performing minimization step: 3633. Total energy = 76.5417 kcal/mol (76.5386 without restraints) Performing minimization step: 3634. Total energy = 76.5154 kcal/mol (76.5123 without restraints) Performing minimization step: 3635. Total energy = 76.4892 kcal/mol (76.4861 without restraints) Performing minimization step: 3636. Total energy = 76.4630 kcal/mol (76.4599 without restraints) Performing minimization step: 3637. Total energy = 76.4369 kcal/mol (76.4338 without restraints) Performing minimization step: 3638. Total energy = 76.4107 kcal/mol (76.4076 without restraints) Performing minimization step: 3639. Total energy = 76.3846 kcal/mol (76.3815 without restraints) Performing minimization step: 3640. Total energy = 76.3585 kcal/mol (76.3554 without restraints) Performing minimization step: 3641. Total energy = 76.3324 kcal/mol (76.3293 without restraints) Performing minimization step: 3642. Total energy = 76.3063 kcal/mol (76.3032 without restraints) Performing minimization step: 3643. Total energy = 76.2802 kcal/mol (76.2771 without restraints) Performing minimization step: 3644. Total energy = 76.2542 kcal/mol (76.2511 without restraints) Performing minimization step: 3645. Total energy = 76.2283 kcal/mol (76.2255 without restraints) Performing minimization step: 3646. Total energy = 76.2025 kcal/mol (76.1995 without restraints) Performing minimization step: 3647. Total energy = 76.1766 kcal/mol (76.1735 without restraints) Performing minimization step: 3648. Total energy = 76.1506 kcal/mol (76.1475 without restraints) Performing minimization step: 3649. Total energy = 76.1246 kcal/mol (76.1216 without restraints) Performing minimization step: 3650. Total energy = 76.0987 kcal/mol (76.0956 without restraints) Performing minimization step: 3651. Total energy = 76.0728 kcal/mol (76.0697 without restraints) Performing minimization step: 3652. Total energy = 76.0469 kcal/mol (76.0438 without restraints) Performing minimization step: 3653. Total energy = 76.0210 kcal/mol (76.0180 without restraints) Performing minimization step: 3654. Total energy = 75.9951 kcal/mol (75.9921 without restraints) Performing minimization step: 3655. Total energy = 75.9693 kcal/mol (75.9663 without restraints) Performing minimization step: 3656. Total energy = 75.9435 kcal/mol (75.9404 without restraints) Performing minimization step: 3657. Total energy = 75.9177 kcal/mol (75.9146 without restraints) Performing minimization step: 3658. Total energy = 75.8919 kcal/mol (75.8889 without restraints) Performing minimization step: 3659. Total energy = 75.8661 kcal/mol (75.8631 without restraints) Performing minimization step: 3660. Total energy = 75.8404 kcal/mol (75.8373 without restraints) Performing minimization step: 3661. Total energy = 75.8146 kcal/mol (75.8116 without restraints) Performing minimization step: 3662. Total energy = 75.7889 kcal/mol (75.7859 without restraints) Performing minimization step: 3663. Total energy = 75.7632 kcal/mol (75.7602 without restraints) Performing minimization step: 3664. Total energy = 75.7376 kcal/mol (75.7345 without restraints) Performing minimization step: 3665. Total energy = 75.7119 kcal/mol (75.7089 without restraints) Performing minimization step: 3666. Total energy = 75.6863 kcal/mol (75.6832 without restraints) Performing minimization step: 3667. Total energy = 75.6606 kcal/mol (75.6576 without restraints) Performing minimization step: 3668. Total energy = 75.6350 kcal/mol (75.6320 without restraints) Performing minimization step: 3669. Total energy = 75.6094 kcal/mol (75.6064 without restraints) Performing minimization step: 3670. Total energy = 75.5839 kcal/mol (75.5809 without restraints) Performing minimization step: 3671. Total energy = 75.5583 kcal/mol (75.5553 without restraints) Performing minimization step: 3672. Total energy = 75.5328 kcal/mol (75.5298 without restraints) Performing minimization step: 3673. Total energy = 75.5073 kcal/mol (75.5043 without restraints) Performing minimization step: 3674. Total energy = 75.4818 kcal/mol (75.4788 without restraints) Performing minimization step: 3675. Total energy = 75.4563 kcal/mol (75.4533 without restraints) Performing minimization step: 3676. Total energy = 75.4308 kcal/mol (75.4278 without restraints) Performing minimization step: 3677. Total energy = 75.4054 kcal/mol (75.4024 without restraints) Performing minimization step: 3678. Total energy = 75.3800 kcal/mol (75.3770 without restraints) Performing minimization step: 3679. Total energy = 75.3546 kcal/mol (75.3516 without restraints) Performing minimization step: 3680. Total energy = 75.3292 kcal/mol (75.3262 without restraints) Performing minimization step: 3681. Total energy = 75.3038 kcal/mol (75.3008 without restraints) Performing minimization step: 3682. Total energy = 75.2785 kcal/mol (75.2755 without restraints) Performing minimization step: 3683. Total energy = 75.2531 kcal/mol (75.2501 without restraints) Performing minimization step: 3684. Total energy = 75.2278 kcal/mol (75.2248 without restraints) Performing minimization step: 3685. Total energy = 75.2025 kcal/mol (75.1995 without restraints) Performing minimization step: 3686. Total energy = 75.1772 kcal/mol (75.1742 without restraints) Performing minimization step: 3687. Total energy = 75.1520 kcal/mol (75.1490 without restraints) Performing minimization step: 3688. Total energy = 75.1267 kcal/mol (75.1237 without restraints) Performing minimization step: 3689. Total energy = 75.1015 kcal/mol (75.0985 without restraints) Performing minimization step: 3690. Total energy = 75.0763 kcal/mol (75.0733 without restraints) Performing minimization step: 3691. Total energy = 75.0511 kcal/mol (75.0481 without restraints) Performing minimization step: 3692. Total energy = 75.0259 kcal/mol (75.0229 without restraints) Performing minimization step: 3693. Total energy = 75.0007 kcal/mol (74.9978 without restraints) Performing minimization step: 3694. Total energy = 74.9756 kcal/mol (74.9726 without restraints) Performing minimization step: 3695. Total energy = 74.9505 kcal/mol (74.9475 without restraints) Performing minimization step: 3696. Total energy = 74.9254 kcal/mol (74.9224 without restraints) Performing minimization step: 3697. Total energy = 74.9003 kcal/mol (74.8973 without restraints) Performing minimization step: 3698. Total energy = 74.8752 kcal/mol (74.8723 without restraints) Performing minimization step: 3699. Total energy = 74.8502 kcal/mol (74.8472 without restraints) Performing minimization step: 3700. Total energy = 74.8251 kcal/mol (74.8222 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 74.8001 kcal/mol (74.7972 without restraints) Performing minimization step: 3702. Total energy = 74.7751 kcal/mol (74.7722 without restraints) Performing minimization step: 3703. Total energy = 74.7501 kcal/mol (74.7472 without restraints) Performing minimization step: 3704. Total energy = 74.7252 kcal/mol (74.7222 without restraints) Performing minimization step: 3705. Total energy = 74.7002 kcal/mol (74.6973 without restraints) Performing minimization step: 3706. Total energy = 74.6753 kcal/mol (74.6724 without restraints) Performing minimization step: 3707. Total energy = 74.6504 kcal/mol (74.6474 without restraints) Performing minimization step: 3708. Total energy = 74.6255 kcal/mol (74.6226 without restraints) Performing minimization step: 3709. Total energy = 74.6006 kcal/mol (74.5977 without restraints) Performing minimization step: 3710. Total energy = 74.5758 kcal/mol (74.5728 without restraints) Performing minimization step: 3711. Total energy = 74.5509 kcal/mol (74.5480 without restraints) Performing minimization step: 3712. Total energy = 74.5261 kcal/mol (74.5232 without restraints) Performing minimization step: 3713. Total energy = 74.5013 kcal/mol (74.4983 without restraints) Performing minimization step: 3714. Total energy = 74.4765 kcal/mol (74.4736 without restraints) Performing minimization step: 3715. Total energy = 74.4517 kcal/mol (74.4488 without restraints) Performing minimization step: 3716. Total energy = 74.4270 kcal/mol (74.4240 without restraints) Performing minimization step: 3717. Total energy = 74.4022 kcal/mol (74.3993 without restraints) Performing minimization step: 3718. Total energy = 74.3775 kcal/mol (74.3746 without restraints) Performing minimization step: 3719. Total energy = 74.3528 kcal/mol (74.3499 without restraints) Performing minimization step: 3720. Total energy = 74.3281 kcal/mol (74.3252 without restraints) Performing minimization step: 3721. Total energy = 74.3034 kcal/mol (74.3005 without restraints) Performing minimization step: 3722. Total energy = 74.2788 kcal/mol (74.2759 without restraints) Performing minimization step: 3723. Total energy = 74.2541 kcal/mol (74.2512 without restraints) Performing minimization step: 3724. Total energy = 74.2295 kcal/mol (74.2266 without restraints) Performing minimization step: 3725. Total energy = 74.2049 kcal/mol (74.2020 without restraints) Performing minimization step: 3726. Total energy = 74.1803 kcal/mol (74.1774 without restraints) Performing minimization step: 3727. Total energy = 74.1558 kcal/mol (74.1529 without restraints) Performing minimization step: 3728. Total energy = 74.1312 kcal/mol (74.1283 without restraints) Performing minimization step: 3729. Total energy = 74.1067 kcal/mol (74.1038 without restraints) Performing minimization step: 3730. Total energy = 74.0822 kcal/mol (74.0793 without restraints) Performing minimization step: 3731. Total energy = 74.0577 kcal/mol (74.0548 without restraints) Performing minimization step: 3732. Total energy = 74.0332 kcal/mol (74.0303 without restraints) Performing minimization step: 3733. Total energy = 74.0087 kcal/mol (74.0058 without restraints) Performing minimization step: 3734. Total energy = 73.9843 kcal/mol (73.9814 without restraints) Performing minimization step: 3735. Total energy = 73.9598 kcal/mol (73.9570 without restraints) Performing minimization step: 3736. Total energy = 73.9354 kcal/mol (73.9326 without restraints) Performing minimization step: 3737. Total energy = 73.9110 kcal/mol (73.9082 without restraints) Performing minimization step: 3738. Total energy = 73.8867 kcal/mol (73.8838 without restraints) Performing minimization step: 3739. Total energy = 73.8623 kcal/mol (73.8594 without restraints) Performing minimization step: 3740. Total energy = 73.8379 kcal/mol (73.8351 without restraints) Performing minimization step: 3741. Total energy = 73.8136 kcal/mol (73.8107 without restraints) Performing minimization step: 3742. Total energy = 73.7893 kcal/mol (73.7864 without restraints) Performing minimization step: 3743. Total energy = 73.7650 kcal/mol (73.7621 without restraints) Performing minimization step: 3744. Total energy = 73.7407 kcal/mol (73.7379 without restraints) Performing minimization step: 3745. Total energy = 73.7165 kcal/mol (73.7136 without restraints) Performing minimization step: 3746. Total energy = 73.6922 kcal/mol (73.6894 without restraints) Performing minimization step: 3747. Total energy = 73.6680 kcal/mol (73.6651 without restraints) Performing minimization step: 3748. Total energy = 73.6438 kcal/mol (73.6409 without restraints) Performing minimization step: 3749. Total energy = 73.6196 kcal/mol (73.6167 without restraints) Performing minimization step: 3750. Total energy = 73.5954 kcal/mol (73.5926 without restraints) Performing minimization step: 3751. Total energy = 73.5712 kcal/mol (73.5684 without restraints) Performing minimization step: 3752. Total energy = 73.5471 kcal/mol (73.5443 without restraints) Performing minimization step: 3753. Total energy = 73.5230 kcal/mol (73.5201 without restraints) Performing minimization step: 3754. Total energy = 73.4989 kcal/mol (73.4960 without restraints) Performing minimization step: 3755. Total energy = 73.4748 kcal/mol (73.4719 without restraints) Performing minimization step: 3756. Total energy = 73.4507 kcal/mol (73.4478 without restraints) Performing minimization step: 3757. Total energy = 73.4266 kcal/mol (73.4238 without restraints) Performing minimization step: 3758. Total energy = 73.4026 kcal/mol (73.3997 without restraints) Performing minimization step: 3759. Total energy = 73.3786 kcal/mol (73.3757 without restraints) Performing minimization step: 3760. Total energy = 73.3545 kcal/mol (73.3517 without restraints) Performing minimization step: 3761. Total energy = 73.3305 kcal/mol (73.3277 without restraints) Performing minimization step: 3762. Total energy = 73.3066 kcal/mol (73.3037 without restraints) Performing minimization step: 3763. Total energy = 73.2826 kcal/mol (73.2798 without restraints) Performing minimization step: 3764. Total energy = 73.2587 kcal/mol (73.2558 without restraints) Performing minimization step: 3765. Total energy = 73.2347 kcal/mol (73.2319 without restraints) Performing minimization step: 3766. Total energy = 73.2108 kcal/mol (73.2080 without restraints) Performing minimization step: 3767. Total energy = 73.1869 kcal/mol (73.1841 without restraints) Performing minimization step: 3768. Total energy = 73.1630 kcal/mol (73.1602 without restraints) Performing minimization step: 3769. Total energy = 73.1392 kcal/mol (73.1364 without restraints) Performing minimization step: 3770. Total energy = 73.1153 kcal/mol (73.1125 without restraints) Performing minimization step: 3771. Total energy = 73.0915 kcal/mol (73.0887 without restraints) Performing minimization step: 3772. Total energy = 73.0677 kcal/mol (73.0649 without restraints) Performing minimization step: 3773. Total energy = 73.0439 kcal/mol (73.0411 without restraints) Performing minimization step: 3774. Total energy = 73.0201 kcal/mol (73.0173 without restraints) Performing minimization step: 3775. Total energy = 72.9963 kcal/mol (72.9935 without restraints) Performing minimization step: 3776. Total energy = 72.9726 kcal/mol (72.9698 without restraints) Performing minimization step: 3777. Total energy = 72.9489 kcal/mol (72.9461 without restraints) Performing minimization step: 3778. Total energy = 72.9251 kcal/mol (72.9223 without restraints) Performing minimization step: 3779. Total energy = 72.9014 kcal/mol (72.8986 without restraints) Performing minimization step: 3780. Total energy = 72.8778 kcal/mol (72.8750 without restraints) Performing minimization step: 3781. Total energy = 72.8541 kcal/mol (72.8513 without restraints) Performing minimization step: 3782. Total energy = 72.8304 kcal/mol (72.8276 without restraints) Performing minimization step: 3783. Total energy = 72.8068 kcal/mol (72.8040 without restraints) Performing minimization step: 3784. Total energy = 72.7832 kcal/mol (72.7804 without restraints) Performing minimization step: 3785. Total energy = 72.7596 kcal/mol (72.7568 without restraints) Performing minimization step: 3786. Total energy = 72.7360 kcal/mol (72.7332 without restraints) Performing minimization step: 3787. Total energy = 72.7124 kcal/mol (72.7096 without restraints) Performing minimization step: 3788. Total energy = 72.6889 kcal/mol (72.6861 without restraints) Performing minimization step: 3789. Total energy = 72.6653 kcal/mol (72.6626 without restraints) Performing minimization step: 3790. Total energy = 72.6418 kcal/mol (72.6390 without restraints) Performing minimization step: 3791. Total energy = 72.6183 kcal/mol (72.6155 without restraints) Performing minimization step: 3792. Total energy = 72.5948 kcal/mol (72.5920 without restraints) Performing minimization step: 3793. Total energy = 72.5713 kcal/mol (72.5686 without restraints) Performing minimization step: 3794. Total energy = 72.5479 kcal/mol (72.5451 without restraints) Performing minimization step: 3795. Total energy = 72.5244 kcal/mol (72.5217 without restraints) Performing minimization step: 3796. Total energy = 72.5010 kcal/mol (72.4983 without restraints) Performing minimization step: 3797. Total energy = 72.4776 kcal/mol (72.4748 without restraints) Performing minimization step: 3798. Total energy = 72.4542 kcal/mol (72.4515 without restraints) Performing minimization step: 3799. Total energy = 72.4308 kcal/mol (72.4281 without restraints) Performing minimization step: 3800. Total energy = 72.4075 kcal/mol (72.4047 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 72.3841 kcal/mol (72.3814 without restraints) Performing minimization step: 3802. Total energy = 72.3608 kcal/mol (72.3580 without restraints) Performing minimization step: 3803. Total energy = 72.3375 kcal/mol (72.3347 without restraints) Performing minimization step: 3804. Total energy = 72.3142 kcal/mol (72.3114 without restraints) Performing minimization step: 3805. Total energy = 72.2909 kcal/mol (72.2882 without restraints) Performing minimization step: 3806. Total energy = 72.2676 kcal/mol (72.2649 without restraints) Performing minimization step: 3807. Total energy = 72.2444 kcal/mol (72.2417 without restraints) Performing minimization step: 3808. Total energy = 72.2212 kcal/mol (72.2184 without restraints) Performing minimization step: 3809. Total energy = 72.1979 kcal/mol (72.1952 without restraints) Performing minimization step: 3810. Total energy = 72.1747 kcal/mol (72.1720 without restraints) Performing minimization step: 3811. Total energy = 72.1516 kcal/mol (72.1488 without restraints) Performing minimization step: 3812. Total energy = 72.1284 kcal/mol (72.1256 without restraints) Performing minimization step: 3813. Total energy = 72.1052 kcal/mol (72.1025 without restraints) Performing minimization step: 3814. Total energy = 72.0821 kcal/mol (72.0794 without restraints) Performing minimization step: 3815. Total energy = 72.0590 kcal/mol (72.0562 without restraints) Performing minimization step: 3816. Total energy = 72.0359 kcal/mol (72.0331 without restraints) Performing minimization step: 3817. Total energy = 72.0128 kcal/mol (72.0100 without restraints) Performing minimization step: 3818. Total energy = 71.9897 kcal/mol (71.9870 without restraints) Performing minimization step: 3819. Total energy = 71.9666 kcal/mol (71.9639 without restraints) Performing minimization step: 3820. Total energy = 71.9436 kcal/mol (71.9409 without restraints) Performing minimization step: 3821. Total energy = 71.9206 kcal/mol (71.9178 without restraints) Performing minimization step: 3822. Total energy = 71.8975 kcal/mol (71.8948 without restraints) Performing minimization step: 3823. Total energy = 71.8745 kcal/mol (71.8718 without restraints) Performing minimization step: 3824. Total energy = 71.8516 kcal/mol (71.8489 without restraints) Performing minimization step: 3825. Total energy = 71.8286 kcal/mol (71.8259 without restraints) Performing minimization step: 3826. Total energy = 71.8056 kcal/mol (71.8029 without restraints) Performing minimization step: 3827. Total energy = 71.7827 kcal/mol (71.7800 without restraints) Performing minimization step: 3828. Total energy = 71.7598 kcal/mol (71.7571 without restraints) Performing minimization step: 3829. Total energy = 71.7369 kcal/mol (71.7342 without restraints) Performing minimization step: 3830. Total energy = 71.7140 kcal/mol (71.7113 without restraints) Performing minimization step: 3831. Total energy = 71.6911 kcal/mol (71.6884 without restraints) Performing minimization step: 3832. Total energy = 71.6683 kcal/mol (71.6656 without restraints) Performing minimization step: 3833. Total energy = 71.6454 kcal/mol (71.6427 without restraints) Performing minimization step: 3834. Total energy = 71.6226 kcal/mol (71.6199 without restraints) Performing minimization step: 3835. Total energy = 71.5998 kcal/mol (71.5971 without restraints) Performing minimization step: 3836. Total energy = 71.5770 kcal/mol (71.5743 without restraints) Performing minimization step: 3837. Total energy = 71.5542 kcal/mol (71.5515 without restraints) Performing minimization step: 3838. Total energy = 71.5315 kcal/mol (71.5288 without restraints) Performing minimization step: 3839. Total energy = 71.5087 kcal/mol (71.5060 without restraints) Performing minimization step: 3840. Total energy = 71.4860 kcal/mol (71.4833 without restraints) Performing minimization step: 3841. Total energy = 71.4633 kcal/mol (71.4606 without restraints) Performing minimization step: 3842. Total energy = 71.4406 kcal/mol (71.4379 without restraints) Performing minimization step: 3843. Total energy = 71.4179 kcal/mol (71.4152 without restraints) Performing minimization step: 3844. Total energy = 71.3952 kcal/mol (71.3925 without restraints) Performing minimization step: 3845. Total energy = 71.3725 kcal/mol (71.3699 without restraints) Performing minimization step: 3846. Total energy = 71.3499 kcal/mol (71.3472 without restraints) Performing minimization step: 3847. Total energy = 71.3273 kcal/mol (71.3246 without restraints) Performing minimization step: 3848. Total energy = 71.3047 kcal/mol (71.3020 without restraints) Performing minimization step: 3849. Total energy = 71.2821 kcal/mol (71.2794 without restraints) Performing minimization step: 3850. Total energy = 71.2595 kcal/mol (71.2568 without restraints) Performing minimization step: 3851. Total energy = 71.2369 kcal/mol (71.2343 without restraints) Performing minimization step: 3852. Total energy = 71.2144 kcal/mol (71.2117 without restraints) Performing minimization step: 3853. Total energy = 71.1918 kcal/mol (71.1892 without restraints) Performing minimization step: 3854. Total energy = 71.1693 kcal/mol (71.1667 without restraints) Performing minimization step: 3855. Total energy = 71.1468 kcal/mol (71.1442 without restraints) Performing minimization step: 3856. Total energy = 71.1243 kcal/mol (71.1217 without restraints) Performing minimization step: 3857. Total energy = 71.1019 kcal/mol (71.0992 without restraints) Performing minimization step: 3858. Total energy = 71.0794 kcal/mol (71.0768 without restraints) Performing minimization step: 3859. Total energy = 71.0570 kcal/mol (71.0543 without restraints) Performing minimization step: 3860. Total energy = 71.0345 kcal/mol (71.0319 without restraints) Performing minimization step: 3861. Total energy = 71.0121 kcal/mol (71.0095 without restraints) Performing minimization step: 3862. Total energy = 70.9897 kcal/mol (70.9871 without restraints) Performing minimization step: 3863. Total energy = 70.9673 kcal/mol (70.9647 without restraints) Performing minimization step: 3864. Total energy = 70.9450 kcal/mol (70.9423 without restraints) Performing minimization step: 3865. Total energy = 70.9226 kcal/mol (70.9200 without restraints) Performing minimization step: 3866. Total energy = 70.9003 kcal/mol (70.8977 without restraints) Performing minimization step: 3867. Total energy = 70.8780 kcal/mol (70.8753 without restraints) Performing minimization step: 3868. Total energy = 70.8557 kcal/mol (70.8530 without restraints) Performing minimization step: 3869. Total energy = 70.8334 kcal/mol (70.8307 without restraints) Performing minimization step: 3870. Total energy = 70.8111 kcal/mol (70.8085 without restraints) Performing minimization step: 3871. Total energy = 70.7888 kcal/mol (70.7862 without restraints) Performing minimization step: 3872. Total energy = 70.7666 kcal/mol (70.7640 without restraints) Performing minimization step: 3873. Total energy = 70.7444 kcal/mol (70.7417 without restraints) Performing minimization step: 3874. Total energy = 70.7222 kcal/mol (70.7195 without restraints) Performing minimization step: 3875. Total energy = 70.6999 kcal/mol (70.6973 without restraints) Performing minimization step: 3876. Total energy = 70.6778 kcal/mol (70.6751 without restraints) Performing minimization step: 3877. Total energy = 70.6556 kcal/mol (70.6530 without restraints) Performing minimization step: 3878. Total energy = 70.6334 kcal/mol (70.6308 without restraints) Performing minimization step: 3879. Total energy = 70.6113 kcal/mol (70.6087 without restraints) Performing minimization step: 3880. Total energy = 70.5892 kcal/mol (70.5866 without restraints) Performing minimization step: 3881. Total energy = 70.5671 kcal/mol (70.5645 without restraints) Performing minimization step: 3882. Total energy = 70.5450 kcal/mol (70.5424 without restraints) Performing minimization step: 3883. Total energy = 70.5229 kcal/mol (70.5203 without restraints) Performing minimization step: 3884. Total energy = 70.5008 kcal/mol (70.4982 without restraints) Performing minimization step: 3885. Total energy = 70.4788 kcal/mol (70.4762 without restraints) Performing minimization step: 3886. Total energy = 70.4567 kcal/mol (70.4541 without restraints) Performing minimization step: 3887. Total energy = 70.4347 kcal/mol (70.4321 without restraints) Performing minimization step: 3888. Total energy = 70.4127 kcal/mol (70.4101 without restraints) Performing minimization step: 3889. Total energy = 70.3907 kcal/mol (70.3881 without restraints) Performing minimization step: 3890. Total energy = 70.3687 kcal/mol (70.3661 without restraints) Performing minimization step: 3891. Total energy = 70.3468 kcal/mol (70.3442 without restraints) Performing minimization step: 3892. Total energy = 70.3248 kcal/mol (70.3222 without restraints) Performing minimization step: 3893. Total energy = 70.3029 kcal/mol (70.3003 without restraints) Performing minimization step: 3894. Total energy = 70.2810 kcal/mol (70.2784 without restraints) Performing minimization step: 3895. Total energy = 70.2591 kcal/mol (70.2565 without restraints) Performing minimization step: 3896. Total energy = 70.2372 kcal/mol (70.2346 without restraints) Performing minimization step: 3897. Total energy = 70.2153 kcal/mol (70.2127 without restraints) Performing minimization step: 3898. Total energy = 70.1934 kcal/mol (70.1909 without restraints) Performing minimization step: 3899. Total energy = 70.1716 kcal/mol (70.1690 without restraints) Performing minimization step: 3900. Total energy = 70.1498 kcal/mol (70.1472 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 70.1280 kcal/mol (70.1254 without restraints) Performing minimization step: 3902. Total energy = 70.1062 kcal/mol (70.1036 without restraints) Performing minimization step: 3903. Total energy = 70.0844 kcal/mol (70.0818 without restraints) Performing minimization step: 3904. Total energy = 70.0626 kcal/mol (70.0600 without restraints) Performing minimization step: 3905. Total energy = 70.0408 kcal/mol (70.0383 without restraints) Performing minimization step: 3906. Total energy = 70.0191 kcal/mol (70.0165 without restraints) Performing minimization step: 3907. Total energy = 69.9974 kcal/mol (69.9948 without restraints) Performing minimization step: 3908. Total energy = 69.9757 kcal/mol (69.9731 without restraints) Performing minimization step: 3909. Total energy = 69.9540 kcal/mol (69.9514 without restraints) Performing minimization step: 3910. Total energy = 69.9323 kcal/mol (69.9297 without restraints) Performing minimization step: 3911. Total energy = 69.9106 kcal/mol (69.9081 without restraints) Performing minimization step: 3912. Total energy = 69.8890 kcal/mol (69.8864 without restraints) Performing minimization step: 3913. Total energy = 69.8673 kcal/mol (69.8648 without restraints) Performing minimization step: 3914. Total energy = 69.8457 kcal/mol (69.8431 without restraints) Performing minimization step: 3915. Total energy = 69.8241 kcal/mol (69.8215 without restraints) Performing minimization step: 3916. Total energy = 69.8025 kcal/mol (69.7999 without restraints) Performing minimization step: 3917. Total energy = 69.7809 kcal/mol (69.7784 without restraints) Performing minimization step: 3918. Total energy = 69.7593 kcal/mol (69.7568 without restraints) Performing minimization step: 3919. Total energy = 69.7378 kcal/mol (69.7353 without restraints) Performing minimization step: 3920. Total energy = 69.7163 kcal/mol (69.7137 without restraints) Performing minimization step: 3921. Total energy = 69.6947 kcal/mol (69.6922 without restraints) Performing minimization step: 3922. Total energy = 69.6732 kcal/mol (69.6707 without restraints) Performing minimization step: 3923. Total energy = 69.6517 kcal/mol (69.6492 without restraints) Performing minimization step: 3924. Total energy = 69.6302 kcal/mol (69.6277 without restraints) Performing minimization step: 3925. Total energy = 69.6088 kcal/mol (69.6063 without restraints) Performing minimization step: 3926. Total energy = 69.5873 kcal/mol (69.5848 without restraints) Performing minimization step: 3927. Total energy = 69.5659 kcal/mol (69.5634 without restraints) Performing minimization step: 3928. Total energy = 69.5445 kcal/mol (69.5419 without restraints) Performing minimization step: 3929. Total energy = 69.5231 kcal/mol (69.5205 without restraints) Performing minimization step: 3930. Total energy = 69.5017 kcal/mol (69.4991 without restraints) Performing minimization step: 3931. Total energy = 69.4803 kcal/mol (69.4778 without restraints) Performing minimization step: 3932. Total energy = 69.4589 kcal/mol (69.4564 without restraints) Performing minimization step: 3933. Total energy = 69.4376 kcal/mol (69.4351 without restraints) Performing minimization step: 3934. Total energy = 69.4162 kcal/mol (69.4137 without restraints) Performing minimization step: 3935. Total energy = 69.3949 kcal/mol (69.3924 without restraints) Performing minimization step: 3936. Total energy = 69.3736 kcal/mol (69.3711 without restraints) Performing minimization step: 3937. Total energy = 69.3523 kcal/mol (69.3498 without restraints) Performing minimization step: 3938. Total energy = 69.3310 kcal/mol (69.3285 without restraints) Performing minimization step: 3939. Total energy = 69.3098 kcal/mol (69.3073 without restraints) Performing minimization step: 3940. Total energy = 69.2885 kcal/mol (69.2860 without restraints) Performing minimization step: 3941. Total energy = 69.2673 kcal/mol (69.2648 without restraints) Performing minimization step: 3942. Total energy = 69.2461 kcal/mol (69.2436 without restraints) Performing minimization step: 3943. Total energy = 69.2249 kcal/mol (69.2224 without restraints) Performing minimization step: 3944. Total energy = 69.2037 kcal/mol (69.2012 without restraints) Performing minimization step: 3945. Total energy = 69.1825 kcal/mol (69.1800 without restraints) Performing minimization step: 3946. Total energy = 69.1613 kcal/mol (69.1588 without restraints) Performing minimization step: 3947. Total energy = 69.1402 kcal/mol (69.1377 without restraints) Performing minimization step: 3948. Total energy = 69.1190 kcal/mol (69.1165 without restraints) Performing minimization step: 3949. Total energy = 69.0979 kcal/mol (69.0954 without restraints) Performing minimization step: 3950. Total energy = 69.0768 kcal/mol (69.0743 without restraints) Performing minimization step: 3951. Total energy = 69.0557 kcal/mol (69.0532 without restraints) Performing minimization step: 3952. Total energy = 69.0346 kcal/mol (69.0321 without restraints) Performing minimization step: 3953. Total energy = 69.0136 kcal/mol (69.0111 without restraints) Performing minimization step: 3954. Total energy = 68.9925 kcal/mol (68.9900 without restraints) Performing minimization step: 3955. Total energy = 68.9715 kcal/mol (68.9690 without restraints) Performing minimization step: 3956. Total energy = 68.9504 kcal/mol (68.9480 without restraints) Performing minimization step: 3957. Total energy = 68.9294 kcal/mol (68.9270 without restraints) Performing minimization step: 3958. Total energy = 68.9084 kcal/mol (68.9060 without restraints) Performing minimization step: 3959. Total energy = 68.8875 kcal/mol (68.8850 without restraints) Performing minimization step: 3960. Total energy = 68.8665 kcal/mol (68.8640 without restraints) Performing minimization step: 3961. Total energy = 68.8455 kcal/mol (68.8431 without restraints) Performing minimization step: 3962. Total energy = 68.8246 kcal/mol (68.8221 without restraints) Performing minimization step: 3963. Total energy = 68.8037 kcal/mol (68.8012 without restraints) Performing minimization step: 3964. Total energy = 68.7828 kcal/mol (68.7803 without restraints) Performing minimization step: 3965. Total energy = 68.7619 kcal/mol (68.7594 without restraints) Performing minimization step: 3966. Total energy = 68.7410 kcal/mol (68.7385 without restraints) Performing minimization step: 3967. Total energy = 68.7201 kcal/mol (68.7176 without restraints) Performing minimization step: 3968. Total energy = 68.6992 kcal/mol (68.6968 without restraints) Performing minimization step: 3969. Total energy = 68.6784 kcal/mol (68.6759 without restraints) Performing minimization step: 3970. Total energy = 68.6576 kcal/mol (68.6551 without restraints) Performing minimization step: 3971. Total energy = 68.6368 kcal/mol (68.6343 without restraints) Performing minimization step: 3972. Total energy = 68.6160 kcal/mol (68.6135 without restraints) Performing minimization step: 3973. Total energy = 68.5952 kcal/mol (68.5927 without restraints) Performing minimization step: 3974. Total energy = 68.5744 kcal/mol (68.5720 without restraints) Performing minimization step: 3975. Total energy = 68.5536 kcal/mol (68.5512 without restraints) Performing minimization step: 3976. Total energy = 68.5329 kcal/mol (68.5305 without restraints) Performing minimization step: 3977. Total energy = 68.5122 kcal/mol (68.5097 without restraints) Performing minimization step: 3978. Total energy = 68.4915 kcal/mol (68.4890 without restraints) Performing minimization step: 3979. Total energy = 68.4708 kcal/mol (68.4683 without restraints) Performing minimization step: 3980. Total energy = 68.4501 kcal/mol (68.4476 without restraints) Performing minimization step: 3981. Total energy = 68.4294 kcal/mol (68.4269 without restraints) Performing minimization step: 3982. Total energy = 68.4087 kcal/mol (68.4063 without restraints) Performing minimization step: 3983. Total energy = 68.3881 kcal/mol (68.3856 without restraints) Performing minimization step: 3984. Total energy = 68.3674 kcal/mol (68.3650 without restraints) Performing minimization step: 3985. Total energy = 68.3468 kcal/mol (68.3444 without restraints) Performing minimization step: 3986. Total energy = 68.3262 kcal/mol (68.3238 without restraints) Performing minimization step: 3987. Total energy = 68.3056 kcal/mol (68.3032 without restraints) Performing minimization step: 3988. Total energy = 68.2850 kcal/mol (68.2826 without restraints) Performing minimization step: 3989. Total energy = 68.2645 kcal/mol (68.2621 without restraints) Performing minimization step: 3990. Total energy = 68.2439 kcal/mol (68.2415 without restraints) Performing minimization step: 3991. Total energy = 68.2234 kcal/mol (68.2210 without restraints) Performing minimization step: 3992. Total energy = 68.2029 kcal/mol (68.2004 without restraints) Performing minimization step: 3993. Total energy = 68.1824 kcal/mol (68.1799 without restraints) Performing minimization step: 3994. Total energy = 68.1619 kcal/mol (68.1594 without restraints) Performing minimization step: 3995. Total energy = 68.1414 kcal/mol (68.1390 without restraints) Performing minimization step: 3996. Total energy = 68.1209 kcal/mol (68.1185 without restraints) Performing minimization step: 3997. Total energy = 68.1005 kcal/mol (68.0980 without restraints) Performing minimization step: 3998. Total energy = 68.0800 kcal/mol (68.0776 without restraints) Performing minimization step: 3999. Total energy = 68.0596 kcal/mol (68.0572 without restraints) Performing minimization step: 4000. Total energy = 68.0392 kcal/mol (68.0368 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 68.0188 kcal/mol (68.0164 without restraints) Performing minimization step: 4002. Total energy = 67.9984 kcal/mol (67.9960 without restraints) Performing minimization step: 4003. Total energy = 67.9780 kcal/mol (67.9756 without restraints) Performing minimization step: 4004. Total energy = 67.9576 kcal/mol (67.9552 without restraints) Performing minimization step: 4005. Total energy = 67.9373 kcal/mol (67.9349 without restraints) Performing minimization step: 4006. Total energy = 67.9170 kcal/mol (67.9146 without restraints) Performing minimization step: 4007. Total energy = 67.8966 kcal/mol (67.8943 without restraints) Performing minimization step: 4008. Total energy = 67.8763 kcal/mol (67.8739 without restraints) Performing minimization step: 4009. Total energy = 67.8561 kcal/mol (67.8537 without restraints) Performing minimization step: 4010. Total energy = 67.8358 kcal/mol (67.8334 without restraints) Performing minimization step: 4011. Total energy = 67.8155 kcal/mol (67.8131 without restraints) Performing minimization step: 4012. Total energy = 67.7953 kcal/mol (67.7929 without restraints) Performing minimization step: 4013. Total energy = 67.7750 kcal/mol (67.7726 without restraints) Performing minimization step: 4014. Total energy = 67.7548 kcal/mol (67.7524 without restraints) Performing minimization step: 4015. Total energy = 67.7346 kcal/mol (67.7322 without restraints) Performing minimization step: 4016. Total energy = 67.7144 kcal/mol (67.7120 without restraints) Performing minimization step: 4017. Total energy = 67.6942 kcal/mol (67.6918 without restraints) Performing minimization step: 4018. Total energy = 67.6740 kcal/mol (67.6717 without restraints) Performing minimization step: 4019. Total energy = 67.6539 kcal/mol (67.6515 without restraints) Performing minimization step: 4020. Total energy = 67.6337 kcal/mol (67.6314 without restraints) Performing minimization step: 4021. Total energy = 67.6136 kcal/mol (67.6112 without restraints) Performing minimization step: 4022. Total energy = 67.5935 kcal/mol (67.5911 without restraints) Performing minimization step: 4023. Total energy = 67.5734 kcal/mol (67.5710 without restraints) Performing minimization step: 4024. Total energy = 67.5533 kcal/mol (67.5509 without restraints) Performing minimization step: 4025. Total energy = 67.5332 kcal/mol (67.5308 without restraints) Performing minimization step: 4026. Total energy = 67.5131 kcal/mol (67.5108 without restraints) Performing minimization step: 4027. Total energy = 67.4931 kcal/mol (67.4907 without restraints) Performing minimization step: 4028. Total energy = 67.4731 kcal/mol (67.4707 without restraints) Performing minimization step: 4029. Total energy = 67.4530 kcal/mol (67.4507 without restraints) Performing minimization step: 4030. Total energy = 67.4330 kcal/mol (67.4307 without restraints) Performing minimization step: 4031. Total energy = 67.4130 kcal/mol (67.4107 without restraints) Performing minimization step: 4032. Total energy = 67.3931 kcal/mol (67.3907 without restraints) Performing minimization step: 4033. Total energy = 67.3731 kcal/mol (67.3707 without restraints) Performing minimization step: 4034. Total energy = 67.3531 kcal/mol (67.3508 without restraints) Performing minimization step: 4035. Total energy = 67.3332 kcal/mol (67.3308 without restraints) Performing minimization step: 4036. Total energy = 67.3133 kcal/mol (67.3109 without restraints) Performing minimization step: 4037. Total energy = 67.2933 kcal/mol (67.2910 without restraints) Performing minimization step: 4038. Total energy = 67.2734 kcal/mol (67.2711 without restraints) Performing minimization step: 4039. Total energy = 67.2535 kcal/mol (67.2512 without restraints) Performing minimization step: 4040. Total energy = 67.2337 kcal/mol (67.2313 without restraints) Performing minimization step: 4041. Total energy = 67.2138 kcal/mol (67.2115 without restraints) Performing minimization step: 4042. Total energy = 67.1940 kcal/mol (67.1916 without restraints) Performing minimization step: 4043. Total energy = 67.1741 kcal/mol (67.1718 without restraints) Performing minimization step: 4044. Total energy = 67.1543 kcal/mol (67.1520 without restraints) Performing minimization step: 4045. Total energy = 67.1345 kcal/mol (67.1321 without restraints) Performing minimization step: 4046. Total energy = 67.1147 kcal/mol (67.1124 without restraints) Performing minimization step: 4047. Total energy = 67.0949 kcal/mol (67.0926 without restraints) Performing minimization step: 4048. Total energy = 67.0751 kcal/mol (67.0728 without restraints) Performing minimization step: 4049. Total energy = 67.0554 kcal/mol (67.0530 without restraints) Performing minimization step: 4050. Total energy = 67.0356 kcal/mol (67.0333 without restraints) Performing minimization step: 4051. Total energy = 67.0159 kcal/mol (67.0136 without restraints) Performing minimization step: 4052. Total energy = 66.9962 kcal/mol (66.9939 without restraints) Performing minimization step: 4053. Total energy = 66.9765 kcal/mol (66.9742 without restraints) Performing minimization step: 4054. Total energy = 66.9568 kcal/mol (66.9545 without restraints) Performing minimization step: 4055. Total energy = 66.9371 kcal/mol (66.9348 without restraints) Performing minimization step: 4056. Total energy = 66.9174 kcal/mol (66.9151 without restraints) Performing minimization step: 4057. Total energy = 66.8978 kcal/mol (66.8955 without restraints) Performing minimization step: 4058. Total energy = 66.8781 kcal/mol (66.8758 without restraints) Performing minimization step: 4059. Total energy = 66.8585 kcal/mol (66.8562 without restraints) Performing minimization step: 4060. Total energy = 66.8389 kcal/mol (66.8366 without restraints) Performing minimization step: 4061. Total energy = 66.8193 kcal/mol (66.8170 without restraints) Performing minimization step: 4062. Total energy = 66.7997 kcal/mol (66.7974 without restraints) Performing minimization step: 4063. Total energy = 66.7801 kcal/mol (66.7778 without restraints) Performing minimization step: 4064. Total energy = 66.7606 kcal/mol (66.7583 without restraints) Performing minimization step: 4065. Total energy = 66.7410 kcal/mol (66.7387 without restraints) Performing minimization step: 4066. Total energy = 66.7215 kcal/mol (66.7192 without restraints) Performing minimization step: 4067. Total energy = 66.7020 kcal/mol (66.6997 without restraints) Performing minimization step: 4068. Total energy = 66.6825 kcal/mol (66.6802 without restraints) Performing minimization step: 4069. Total energy = 66.6630 kcal/mol (66.6607 without restraints) Performing minimization step: 4070. Total energy = 66.6435 kcal/mol (66.6412 without restraints) Performing minimization step: 4071. Total energy = 66.6240 kcal/mol (66.6217 without restraints) Performing minimization step: 4072. Total energy = 66.6046 kcal/mol (66.6023 without restraints) Performing minimization step: 4073. Total energy = 66.5851 kcal/mol (66.5828 without restraints) Performing minimization step: 4074. Total energy = 66.5657 kcal/mol (66.5634 without restraints) Performing minimization step: 4075. Total energy = 66.5463 kcal/mol (66.5440 without restraints) Performing minimization step: 4076. Total energy = 66.5269 kcal/mol (66.5246 without restraints) Performing minimization step: 4077. Total energy = 66.5075 kcal/mol (66.5052 without restraints) Performing minimization step: 4078. Total energy = 66.4881 kcal/mol (66.4858 without restraints) Performing minimization step: 4079. Total energy = 66.4687 kcal/mol (66.4665 without restraints) Performing minimization step: 4080. Total energy = 66.4494 kcal/mol (66.4471 without restraints) Performing minimization step: 4081. Total energy = 66.4300 kcal/mol (66.4278 without restraints) Performing minimization step: 4082. Total energy = 66.4107 kcal/mol (66.4084 without restraints) Performing minimization step: 4083. Total energy = 66.3914 kcal/mol (66.3891 without restraints) Performing minimization step: 4084. Total energy = 66.3721 kcal/mol (66.3698 without restraints) Performing minimization step: 4085. Total energy = 66.3528 kcal/mol (66.3505 without restraints) Performing minimization step: 4086. Total energy = 66.3335 kcal/mol (66.3313 without restraints) Performing minimization step: 4087. Total energy = 66.3143 kcal/mol (66.3120 without restraints) Performing minimization step: 4088. Total energy = 66.2950 kcal/mol (66.2928 without restraints) Performing minimization step: 4089. Total energy = 66.2758 kcal/mol (66.2735 without restraints) Performing minimization step: 4090. Total energy = 66.2566 kcal/mol (66.2543 without restraints) Performing minimization step: 4091. Total energy = 66.2374 kcal/mol (66.2351 without restraints) Performing minimization step: 4092. Total energy = 66.2182 kcal/mol (66.2159 without restraints) Performing minimization step: 4093. Total energy = 66.1990 kcal/mol (66.1967 without restraints) Performing minimization step: 4094. Total energy = 66.1798 kcal/mol (66.1775 without restraints) Performing minimization step: 4095. Total energy = 66.1606 kcal/mol (66.1584 without restraints) Performing minimization step: 4096. Total energy = 66.1415 kcal/mol (66.1392 without restraints) Performing minimization step: 4097. Total energy = 66.1224 kcal/mol (66.1201 without restraints) Performing minimization step: 4098. Total energy = 66.1032 kcal/mol (66.1010 without restraints) Performing minimization step: 4099. Total energy = 66.0841 kcal/mol (66.0819 without restraints) Performing minimization step: 4100. Total energy = 66.0650 kcal/mol (66.0628 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 66.0459 kcal/mol (66.0437 without restraints) Performing minimization step: 4102. Total energy = 66.0269 kcal/mol (66.0246 without restraints) Performing minimization step: 4103. Total energy = 66.0078 kcal/mol (66.0056 without restraints) Performing minimization step: 4104. Total energy = 65.9888 kcal/mol (65.9865 without restraints) Performing minimization step: 4105. Total energy = 65.9697 kcal/mol (65.9675 without restraints) Performing minimization step: 4106. Total energy = 65.9507 kcal/mol (65.9485 without restraints) Performing minimization step: 4107. Total energy = 65.9317 kcal/mol (65.9295 without restraints) Performing minimization step: 4108. Total energy = 65.9127 kcal/mol (65.9105 without restraints) Performing minimization step: 4109. Total energy = 65.8937 kcal/mol (65.8915 without restraints) Performing minimization step: 4110. Total energy = 65.8748 kcal/mol (65.8725 without restraints) Performing minimization step: 4111. Total energy = 65.8558 kcal/mol (65.8536 without restraints) Performing minimization step: 4112. Total energy = 65.8369 kcal/mol (65.8346 without restraints) Performing minimization step: 4113. Total energy = 65.8179 kcal/mol (65.8157 without restraints) Performing minimization step: 4114. Total energy = 65.7990 kcal/mol (65.7968 without restraints) Performing minimization step: 4115. Total energy = 65.7801 kcal/mol (65.7779 without restraints) Performing minimization step: 4116. Total energy = 65.7612 kcal/mol (65.7590 without restraints) Performing minimization step: 4117. Total energy = 65.7423 kcal/mol (65.7401 without restraints) Performing minimization step: 4118. Total energy = 65.7235 kcal/mol (65.7212 without restraints) Performing minimization step: 4119. Total energy = 65.7046 kcal/mol (65.7024 without restraints) Performing minimization step: 4120. Total energy = 65.6858 kcal/mol (65.6835 without restraints) Performing minimization step: 4121. Total energy = 65.6669 kcal/mol (65.6647 without restraints) Performing minimization step: 4122. Total energy = 65.6481 kcal/mol (65.6459 without restraints) Performing minimization step: 4123. Total energy = 65.6293 kcal/mol (65.6271 without restraints) Performing minimization step: 4124. Total energy = 65.6105 kcal/mol (65.6083 without restraints) Performing minimization step: 4125. Total energy = 65.5917 kcal/mol (65.5895 without restraints) Performing minimization step: 4126. Total energy = 65.5730 kcal/mol (65.5708 without restraints) Performing minimization step: 4127. Total energy = 65.5542 kcal/mol (65.5520 without restraints) Performing minimization step: 4128. Total energy = 65.5355 kcal/mol (65.5333 without restraints) Performing minimization step: 4129. Total energy = 65.5167 kcal/mol (65.5145 without restraints) Performing minimization step: 4130. Total energy = 65.4980 kcal/mol (65.4958 without restraints) Performing minimization step: 4131. Total energy = 65.4793 kcal/mol (65.4771 without restraints) Performing minimization step: 4132. Total energy = 65.4606 kcal/mol (65.4584 without restraints) Performing minimization step: 4133. Total energy = 65.4419 kcal/mol (65.4397 without restraints) Performing minimization step: 4134. Total energy = 65.4233 kcal/mol (65.4211 without restraints) Performing minimization step: 4135. Total energy = 65.4046 kcal/mol (65.4024 without restraints) Performing minimization step: 4136. Total energy = 65.3860 kcal/mol (65.3838 without restraints) Performing minimization step: 4137. Total energy = 65.3674 kcal/mol (65.3652 without restraints) Performing minimization step: 4138. Total energy = 65.3487 kcal/mol (65.3465 without restraints) Performing minimization step: 4139. Total energy = 65.3301 kcal/mol (65.3279 without restraints) Performing minimization step: 4140. Total energy = 65.3115 kcal/mol (65.3093 without restraints) Performing minimization step: 4141. Total energy = 65.2930 kcal/mol (65.2908 without restraints) Performing minimization step: 4142. Total energy = 65.2744 kcal/mol (65.2722 without restraints) Performing minimization step: 4143. Total energy = 65.2558 kcal/mol (65.2536 without restraints) Performing minimization step: 4144. Total energy = 65.2373 kcal/mol (65.2351 without restraints) Performing minimization step: 4145. Total energy = 65.2188 kcal/mol (65.2166 without restraints) Performing minimization step: 4146. Total energy = 65.2002 kcal/mol (65.1981 without restraints) Performing minimization step: 4147. Total energy = 65.1817 kcal/mol (65.1796 without restraints) Performing minimization step: 4148. Total energy = 65.1632 kcal/mol (65.1611 without restraints) Performing minimization step: 4149. Total energy = 65.1448 kcal/mol (65.1426 without restraints) Performing minimization step: 4150. Total energy = 65.1263 kcal/mol (65.1241 without restraints) Performing minimization step: 4151. Total energy = 65.1078 kcal/mol (65.1057 without restraints) Performing minimization step: 4152. Total energy = 65.0894 kcal/mol (65.0872 without restraints) Performing minimization step: 4153. Total energy = 65.0710 kcal/mol (65.0688 without restraints) Performing minimization step: 4154. Total energy = 65.0525 kcal/mol (65.0504 without restraints) Performing minimization step: 4155. Total energy = 65.0341 kcal/mol (65.0320 without restraints) Performing minimization step: 4156. Total energy = 65.0157 kcal/mol (65.0136 without restraints) Performing minimization step: 4157. Total energy = 64.9974 kcal/mol (64.9952 without restraints) Performing minimization step: 4158. Total energy = 64.9790 kcal/mol (64.9768 without restraints) Performing minimization step: 4159. Total energy = 64.9606 kcal/mol (64.9585 without restraints) Performing minimization step: 4160. Total energy = 64.9423 kcal/mol (64.9401 without restraints) Performing minimization step: 4161. Total energy = 64.9240 kcal/mol (64.9218 without restraints) Performing minimization step: 4162. Total energy = 64.9056 kcal/mol (64.9035 without restraints) Performing minimization step: 4163. Total energy = 64.8873 kcal/mol (64.8852 without restraints) Performing minimization step: 4164. Total energy = 64.8690 kcal/mol (64.8669 without restraints) Performing minimization step: 4165. Total energy = 64.8507 kcal/mol (64.8486 without restraints) Performing minimization step: 4166. Total energy = 64.8325 kcal/mol (64.8303 without restraints) Performing minimization step: 4167. Total energy = 64.8142 kcal/mol (64.8121 without restraints) Performing minimization step: 4168. Total energy = 64.7960 kcal/mol (64.7938 without restraints) Performing minimization step: 4169. Total energy = 64.7777 kcal/mol (64.7756 without restraints) Performing minimization step: 4170. Total energy = 64.7595 kcal/mol (64.7574 without restraints) Performing minimization step: 4171. Total energy = 64.7413 kcal/mol (64.7392 without restraints) Performing minimization step: 4172. Total energy = 64.7231 kcal/mol (64.7210 without restraints) Performing minimization step: 4173. Total energy = 64.7049 kcal/mol (64.7028 without restraints) Performing minimization step: 4174. Total energy = 64.6867 kcal/mol (64.6846 without restraints) Performing minimization step: 4175. Total energy = 64.6686 kcal/mol (64.6664 without restraints) Performing minimization step: 4176. Total energy = 64.6504 kcal/mol (64.6483 without restraints) Performing minimization step: 4177. Total energy = 64.6323 kcal/mol (64.6302 without restraints) Performing minimization step: 4178. Total energy = 64.6142 kcal/mol (64.6120 without restraints) Performing minimization step: 4179. Total energy = 64.5961 kcal/mol (64.5939 without restraints) Performing minimization step: 4180. Total energy = 64.5780 kcal/mol (64.5758 without restraints) Performing minimization step: 4181. Total energy = 64.5599 kcal/mol (64.5577 without restraints) Performing minimization step: 4182. Total energy = 64.5418 kcal/mol (64.5397 without restraints) Performing minimization step: 4183. Total energy = 64.5237 kcal/mol (64.5216 without restraints) Performing minimization step: 4184. Total energy = 64.5057 kcal/mol (64.5035 without restraints) Performing minimization step: 4185. Total energy = 64.4876 kcal/mol (64.4855 without restraints) Performing minimization step: 4186. Total energy = 64.4696 kcal/mol (64.4675 without restraints) Performing minimization step: 4187. Total energy = 64.4516 kcal/mol (64.4495 without restraints) Performing minimization step: 4188. Total energy = 64.4336 kcal/mol (64.4315 without restraints) Performing minimization step: 4189. Total energy = 64.4156 kcal/mol (64.4135 without restraints) Performing minimization step: 4190. Total energy = 64.3976 kcal/mol (64.3955 without restraints) Performing minimization step: 4191. Total energy = 64.3796 kcal/mol (64.3775 without restraints) Performing minimization step: 4192. Total energy = 64.3617 kcal/mol (64.3596 without restraints) Performing minimization step: 4193. Total energy = 64.3437 kcal/mol (64.3416 without restraints) Performing minimization step: 4194. Total energy = 64.3258 kcal/mol (64.3237 without restraints) Performing minimization step: 4195. Total energy = 64.3079 kcal/mol (64.3058 without restraints) Performing minimization step: 4196. Total energy = 64.2900 kcal/mol (64.2879 without restraints) Performing minimization step: 4197. Total energy = 64.2721 kcal/mol (64.2700 without restraints) Performing minimization step: 4198. Total energy = 64.2542 kcal/mol (64.2521 without restraints) Performing minimization step: 4199. Total energy = 64.2363 kcal/mol (64.2342 without restraints) Performing minimization step: 4200. Total energy = 64.2185 kcal/mol (64.2164 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 64.2006 kcal/mol (64.1985 without restraints) Performing minimization step: 4202. Total energy = 64.1828 kcal/mol (64.1807 without restraints) Performing minimization step: 4203. Total energy = 64.1650 kcal/mol (64.1629 without restraints) Performing minimization step: 4204. Total energy = 64.1472 kcal/mol (64.1451 without restraints) Performing minimization step: 4205. Total energy = 64.1294 kcal/mol (64.1273 without restraints) Performing minimization step: 4206. Total energy = 64.1116 kcal/mol (64.1095 without restraints) Performing minimization step: 4207. Total energy = 64.0938 kcal/mol (64.0917 without restraints) Performing minimization step: 4208. Total energy = 64.0760 kcal/mol (64.0739 without restraints) Performing minimization step: 4209. Total energy = 64.0583 kcal/mol (64.0562 without restraints) Performing minimization step: 4210. Total energy = 64.0405 kcal/mol (64.0385 without restraints) Performing minimization step: 4211. Total energy = 64.0228 kcal/mol (64.0207 without restraints) Performing minimization step: 4212. Total energy = 64.0051 kcal/mol (64.0030 without restraints) Performing minimization step: 4213. Total energy = 63.9874 kcal/mol (63.9853 without restraints) Performing minimization step: 4214. Total energy = 63.9697 kcal/mol (63.9676 without restraints) Performing minimization step: 4215. Total energy = 63.9520 kcal/mol (63.9499 without restraints) Performing minimization step: 4216. Total energy = 63.9344 kcal/mol (63.9323 without restraints) Performing minimization step: 4217. Total energy = 63.9167 kcal/mol (63.9146 without restraints) Performing minimization step: 4218. Total energy = 63.8991 kcal/mol (63.8970 without restraints) Performing minimization step: 4219. Total energy = 63.8814 kcal/mol (63.8793 without restraints) Performing minimization step: 4220. Total energy = 63.8638 kcal/mol (63.8617 without restraints) Performing minimization step: 4221. Total energy = 63.8462 kcal/mol (63.8441 without restraints) Performing minimization step: 4222. Total energy = 63.8286 kcal/mol (63.8265 without restraints) Performing minimization step: 4223. Total energy = 63.8110 kcal/mol (63.8089 without restraints) Performing minimization step: 4224. Total energy = 63.7934 kcal/mol (63.7914 without restraints) Performing minimization step: 4225. Total energy = 63.7759 kcal/mol (63.7738 without restraints) Performing minimization step: 4226. Total energy = 63.7583 kcal/mol (63.7563 without restraints) Performing minimization step: 4227. Total energy = 63.7408 kcal/mol (63.7387 without restraints) Performing minimization step: 4228. Total energy = 63.7233 kcal/mol (63.7212 without restraints) Performing minimization step: 4229. Total energy = 63.7058 kcal/mol (63.7037 without restraints) Performing minimization step: 4230. Total energy = 63.6883 kcal/mol (63.6862 without restraints) Performing minimization step: 4231. Total energy = 63.6708 kcal/mol (63.6687 without restraints) Performing minimization step: 4232. Total energy = 63.6533 kcal/mol (63.6512 without restraints) Performing minimization step: 4233. Total energy = 63.6358 kcal/mol (63.6338 without restraints) Performing minimization step: 4234. Total energy = 63.6184 kcal/mol (63.6163 without restraints) Performing minimization step: 4235. Total energy = 63.6009 kcal/mol (63.5989 without restraints) Performing minimization step: 4236. Total energy = 63.5835 kcal/mol (63.5814 without restraints) Performing minimization step: 4237. Total energy = 63.5661 kcal/mol (63.5640 without restraints) Performing minimization step: 4238. Total energy = 63.5487 kcal/mol (63.5466 without restraints) Performing minimization step: 4239. Total energy = 63.5313 kcal/mol (63.5292 without restraints) Performing minimization step: 4240. Total energy = 63.5139 kcal/mol (63.5118 without restraints) Performing minimization step: 4241. Total energy = 63.4965 kcal/mol (63.4945 without restraints) Performing minimization step: 4242. Total energy = 63.4792 kcal/mol (63.4771 without restraints) Performing minimization step: 4243. Total energy = 63.4618 kcal/mol (63.4598 without restraints) Performing minimization step: 4244. Total energy = 63.4445 kcal/mol (63.4424 without restraints) Performing minimization step: 4245. Total energy = 63.4271 kcal/mol (63.4251 without restraints) Performing minimization step: 4246. Total energy = 63.4098 kcal/mol (63.4078 without restraints) Performing minimization step: 4247. Total energy = 63.3925 kcal/mol (63.3905 without restraints) Performing minimization step: 4248. Total energy = 63.3752 kcal/mol (63.3732 without restraints) Performing minimization step: 4249. Total energy = 63.3580 kcal/mol (63.3559 without restraints) Performing minimization step: 4250. Total energy = 63.3407 kcal/mol (63.3386 without restraints) Performing minimization step: 4251. Total energy = 63.3234 kcal/mol (63.3214 without restraints) Performing minimization step: 4252. Total energy = 63.3062 kcal/mol (63.3042 without restraints) Performing minimization step: 4253. Total energy = 63.2890 kcal/mol (63.2869 without restraints) Performing minimization step: 4254. Total energy = 63.2717 kcal/mol (63.2697 without restraints) Performing minimization step: 4255. Total energy = 63.2545 kcal/mol (63.2525 without restraints) Performing minimization step: 4256. Total energy = 63.2373 kcal/mol (63.2353 without restraints) Performing minimization step: 4257. Total energy = 63.2201 kcal/mol (63.2181 without restraints) Performing minimization step: 4258. Total energy = 63.2030 kcal/mol (63.2009 without restraints) Performing minimization step: 4259. Total energy = 63.1858 kcal/mol (63.1838 without restraints) Performing minimization step: 4260. Total energy = 63.1687 kcal/mol (63.1666 without restraints) Performing minimization step: 4261. Total energy = 63.1515 kcal/mol (63.1495 without restraints) Performing minimization step: 4262. Total energy = 63.1344 kcal/mol (63.1324 without restraints) Performing minimization step: 4263. Total energy = 63.1173 kcal/mol (63.1153 without restraints) Performing minimization step: 4264. Total energy = 63.1002 kcal/mol (63.0981 without restraints) Performing minimization step: 4265. Total energy = 63.0831 kcal/mol (63.0811 without restraints) Performing minimization step: 4266. Total energy = 63.0660 kcal/mol (63.0640 without restraints) Performing minimization step: 4267. Total energy = 63.0489 kcal/mol (63.0469 without restraints) Performing minimization step: 4268. Total energy = 63.0319 kcal/mol (63.0299 without restraints) Performing minimization step: 4269. Total energy = 63.0148 kcal/mol (63.0128 without restraints) Performing minimization step: 4270. Total energy = 62.9978 kcal/mol (62.9958 without restraints) Performing minimization step: 4271. Total energy = 62.9808 kcal/mol (62.9788 without restraints) Performing minimization step: 4272. Total energy = 62.9637 kcal/mol (62.9617 without restraints) Performing minimization step: 4273. Total energy = 62.9467 kcal/mol (62.9447 without restraints) Performing minimization step: 4274. Total energy = 62.9298 kcal/mol (62.9278 without restraints) Performing minimization step: 4275. Total energy = 62.9128 kcal/mol (62.9108 without restraints) Performing minimization step: 4276. Total energy = 62.8958 kcal/mol (62.8938 without restraints) Performing minimization step: 4277. Total energy = 62.8789 kcal/mol (62.8769 without restraints) Performing minimization step: 4278. Total energy = 62.8619 kcal/mol (62.8599 without restraints) Performing minimization step: 4279. Total energy = 62.8450 kcal/mol (62.8430 without restraints) Performing minimization step: 4280. Total energy = 62.8281 kcal/mol (62.8261 without restraints) Performing minimization step: 4281. Total energy = 62.8112 kcal/mol (62.8092 without restraints) Performing minimization step: 4282. Total energy = 62.7943 kcal/mol (62.7923 without restraints) Performing minimization step: 4283. Total energy = 62.7774 kcal/mol (62.7754 without restraints) Performing minimization step: 4284. Total energy = 62.7605 kcal/mol (62.7585 without restraints) Performing minimization step: 4285. Total energy = 62.7436 kcal/mol (62.7417 without restraints) Performing minimization step: 4286. Total energy = 62.7268 kcal/mol (62.7248 without restraints) Performing minimization step: 4287. Total energy = 62.7100 kcal/mol (62.7080 without restraints) Performing minimization step: 4288. Total energy = 62.6931 kcal/mol (62.6911 without restraints) Performing minimization step: 4289. Total energy = 62.6763 kcal/mol (62.6743 without restraints) Performing minimization step: 4290. Total energy = 62.6595 kcal/mol (62.6575 without restraints) Performing minimization step: 4291. Total energy = 62.6427 kcal/mol (62.6407 without restraints) Performing minimization step: 4292. Total energy = 62.6259 kcal/mol (62.6239 without restraints) Performing minimization step: 4293. Total energy = 62.6092 kcal/mol (62.6072 without restraints) Performing minimization step: 4294. Total energy = 62.5924 kcal/mol (62.5904 without restraints) Performing minimization step: 4295. Total energy = 62.5756 kcal/mol (62.5737 without restraints) Performing minimization step: 4296. Total energy = 62.5589 kcal/mol (62.5569 without restraints) Performing minimization step: 4297. Total energy = 62.5422 kcal/mol (62.5402 without restraints) Performing minimization step: 4298. Total energy = 62.5255 kcal/mol (62.5235 without restraints) Performing minimization step: 4299. Total energy = 62.5088 kcal/mol (62.5068 without restraints) Performing minimization step: 4300. Total energy = 62.4921 kcal/mol (62.4901 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 62.4754 kcal/mol (62.4734 without restraints) Performing minimization step: 4302. Total energy = 62.4587 kcal/mol (62.4568 without restraints) Performing minimization step: 4303. Total energy = 62.4421 kcal/mol (62.4401 without restraints) Performing minimization step: 4304. Total energy = 62.4254 kcal/mol (62.4235 without restraints) Performing minimization step: 4305. Total energy = 62.4088 kcal/mol (62.4068 without restraints) Performing minimization step: 4306. Total energy = 62.3922 kcal/mol (62.3902 without restraints) Performing minimization step: 4307. Total energy = 62.3756 kcal/mol (62.3736 without restraints) Performing minimization step: 4308. Total energy = 62.3590 kcal/mol (62.3570 without restraints) Performing minimization step: 4309. Total energy = 62.3424 kcal/mol (62.3404 without restraints) Performing minimization step: 4310. Total energy = 62.3258 kcal/mol (62.3238 without restraints) Performing minimization step: 4311. Total energy = 62.3092 kcal/mol (62.3073 without restraints) Performing minimization step: 4312. Total energy = 62.2927 kcal/mol (62.2907 without restraints) Performing minimization step: 4313. Total energy = 62.2761 kcal/mol (62.2742 without restraints) Performing minimization step: 4314. Total energy = 62.2596 kcal/mol (62.2576 without restraints) Performing minimization step: 4315. Total energy = 62.2431 kcal/mol (62.2411 without restraints) Performing minimization step: 4316. Total energy = 62.2266 kcal/mol (62.2246 without restraints) Performing minimization step: 4317. Total energy = 62.2101 kcal/mol (62.2081 without restraints) Performing minimization step: 4318. Total energy = 62.1936 kcal/mol (62.1916 without restraints) Performing minimization step: 4319. Total energy = 62.1771 kcal/mol (62.1752 without restraints) Performing minimization step: 4320. Total energy = 62.1606 kcal/mol (62.1587 without restraints) Performing minimization step: 4321. Total energy = 62.1442 kcal/mol (62.1422 without restraints) Performing minimization step: 4322. Total energy = 62.1277 kcal/mol (62.1258 without restraints) Performing minimization step: 4323. Total energy = 62.1113 kcal/mol (62.1094 without restraints) Performing minimization step: 4324. Total energy = 62.0949 kcal/mol (62.0929 without restraints) Performing minimization step: 4325. Total energy = 62.0785 kcal/mol (62.0765 without restraints) Performing minimization step: 4326. Total energy = 62.0621 kcal/mol (62.0601 without restraints) Performing minimization step: 4327. Total energy = 62.0457 kcal/mol (62.0438 without restraints) Performing minimization step: 4328. Total energy = 62.0293 kcal/mol (62.0274 without restraints) Performing minimization step: 4329. Total energy = 62.0130 kcal/mol (62.0110 without restraints) Performing minimization step: 4330. Total energy = 61.9966 kcal/mol (61.9947 without restraints) Performing minimization step: 4331. Total energy = 61.9803 kcal/mol (61.9783 without restraints) Performing minimization step: 4332. Total energy = 61.9639 kcal/mol (61.9620 without restraints) Performing minimization step: 4333. Total energy = 61.9476 kcal/mol (61.9457 without restraints) Performing minimization step: 4334. Total energy = 61.9313 kcal/mol (61.9294 without restraints) Performing minimization step: 4335. Total energy = 61.9150 kcal/mol (61.9131 without restraints) Performing minimization step: 4336. Total energy = 61.8987 kcal/mol (61.8968 without restraints) Performing minimization step: 4337. Total energy = 61.8824 kcal/mol (61.8805 without restraints) Performing minimization step: 4338. Total energy = 61.8662 kcal/mol (61.8643 without restraints) Performing minimization step: 4339. Total energy = 61.8499 kcal/mol (61.8480 without restraints) Performing minimization step: 4340. Total energy = 61.8337 kcal/mol (61.8318 without restraints) Performing minimization step: 4341. Total energy = 61.8175 kcal/mol (61.8155 without restraints) Performing minimization step: 4342. Total energy = 61.8012 kcal/mol (61.7993 without restraints) Performing minimization step: 4343. Total energy = 61.7850 kcal/mol (61.7831 without restraints) Performing minimization step: 4344. Total energy = 61.7688 kcal/mol (61.7669 without restraints) Performing minimization step: 4345. Total energy = 61.7527 kcal/mol (61.7507 without restraints) Performing minimization step: 4346. Total energy = 61.7365 kcal/mol (61.7346 without restraints) Performing minimization step: 4347. Total energy = 61.7203 kcal/mol (61.7184 without restraints) Performing minimization step: 4348. Total energy = 61.7042 kcal/mol (61.7023 without restraints) Performing minimization step: 4349. Total energy = 61.6880 kcal/mol (61.6861 without restraints) Performing minimization step: 4350. Total energy = 61.6719 kcal/mol (61.6700 without restraints) Performing minimization step: 4351. Total energy = 61.6558 kcal/mol (61.6539 without restraints) Performing minimization step: 4352. Total energy = 61.6397 kcal/mol (61.6378 without restraints) Performing minimization step: 4353. Total energy = 61.6236 kcal/mol (61.6217 without restraints) Performing minimization step: 4354. Total energy = 61.6075 kcal/mol (61.6056 without restraints) Performing minimization step: 4355. Total energy = 61.5914 kcal/mol (61.5895 without restraints) Performing minimization step: 4356. Total energy = 61.5753 kcal/mol (61.5734 without restraints) Performing minimization step: 4357. Total energy = 61.5593 kcal/mol (61.5574 without restraints) Performing minimization step: 4358. Total energy = 61.5432 kcal/mol (61.5414 without restraints) Performing minimization step: 4359. Total energy = 61.5272 kcal/mol (61.5253 without restraints) Performing minimization step: 4360. Total energy = 61.5112 kcal/mol (61.5093 without restraints) Performing minimization step: 4361. Total energy = 61.4952 kcal/mol (61.4933 without restraints) Performing minimization step: 4362. Total energy = 61.4792 kcal/mol (61.4773 without restraints) Performing minimization step: 4363. Total energy = 61.4632 kcal/mol (61.4613 without restraints) Performing minimization step: 4364. Total energy = 61.4472 kcal/mol (61.4453 without restraints) Performing minimization step: 4365. Total energy = 61.4313 kcal/mol (61.4294 without restraints) Performing minimization step: 4366. Total energy = 61.4153 kcal/mol (61.4134 without restraints) Performing minimization step: 4367. Total energy = 61.3994 kcal/mol (61.3975 without restraints) Performing minimization step: 4368. Total energy = 61.3834 kcal/mol (61.3816 without restraints) Performing minimization step: 4369. Total energy = 61.3675 kcal/mol (61.3656 without restraints) Performing minimization step: 4370. Total energy = 61.3516 kcal/mol (61.3497 without restraints) Performing minimization step: 4371. Total energy = 61.3357 kcal/mol (61.3338 without restraints) Performing minimization step: 4372. Total energy = 61.3198 kcal/mol (61.3180 without restraints) Performing minimization step: 4373. Total energy = 61.3039 kcal/mol (61.3021 without restraints) Performing minimization step: 4374. Total energy = 61.2881 kcal/mol (61.2862 without restraints) Performing minimization step: 4375. Total energy = 61.2722 kcal/mol (61.2704 without restraints) Performing minimization step: 4376. Total energy = 61.2564 kcal/mol (61.2545 without restraints) Performing minimization step: 4377. Total energy = 61.2406 kcal/mol (61.2387 without restraints) Performing minimization step: 4378. Total energy = 61.2247 kcal/mol (61.2229 without restraints) Performing minimization step: 4379. Total energy = 61.2089 kcal/mol (61.2071 without restraints) Performing minimization step: 4380. Total energy = 61.1931 kcal/mol (61.1913 without restraints) Performing minimization step: 4381. Total energy = 61.1773 kcal/mol (61.1755 without restraints) Performing minimization step: 4382. Total energy = 61.1616 kcal/mol (61.1597 without restraints) Performing minimization step: 4383. Total energy = 61.1458 kcal/mol (61.1439 without restraints) Performing minimization step: 4384. Total energy = 61.1300 kcal/mol (61.1282 without restraints) Performing minimization step: 4385. Total energy = 61.1143 kcal/mol (61.1124 without restraints) Performing minimization step: 4386. Total energy = 61.0985 kcal/mol (61.0967 without restraints) Performing minimization step: 4387. Total energy = 61.0828 kcal/mol (61.0810 without restraints) Performing minimization step: 4388. Total energy = 61.0671 kcal/mol (61.0653 without restraints) Performing minimization step: 4389. Total energy = 61.0514 kcal/mol (61.0496 without restraints) Performing minimization step: 4390. Total energy = 61.0357 kcal/mol (61.0339 without restraints) Performing minimization step: 4391. Total energy = 61.0200 kcal/mol (61.0182 without restraints) Performing minimization step: 4392. Total energy = 61.0044 kcal/mol (61.0025 without restraints) Performing minimization step: 4393. Total energy = 60.9887 kcal/mol (60.9869 without restraints) Performing minimization step: 4394. Total energy = 60.9731 kcal/mol (60.9712 without restraints) Performing minimization step: 4395. Total energy = 60.9574 kcal/mol (60.9556 without restraints) Performing minimization step: 4396. Total energy = 60.9418 kcal/mol (60.9400 without restraints) Performing minimization step: 4397. Total energy = 60.9262 kcal/mol (60.9243 without restraints) Performing minimization step: 4398. Total energy = 60.9106 kcal/mol (60.9087 without restraints) Performing minimization step: 4399. Total energy = 60.8950 kcal/mol (60.8931 without restraints) Performing minimization step: 4400. Total energy = 60.8794 kcal/mol (60.8776 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 60.8638 kcal/mol (60.8620 without restraints) Performing minimization step: 4402. Total energy = 60.8483 kcal/mol (60.8464 without restraints) Performing minimization step: 4403. Total energy = 60.8327 kcal/mol (60.8309 without restraints) Performing minimization step: 4404. Total energy = 60.8172 kcal/mol (60.8153 without restraints) Performing minimization step: 4405. Total energy = 60.8017 kcal/mol (60.7998 without restraints) Performing minimization step: 4406. Total energy = 60.7861 kcal/mol (60.7843 without restraints) Performing minimization step: 4407. Total energy = 60.7706 kcal/mol (60.7688 without restraints) Performing minimization step: 4408. Total energy = 60.7551 kcal/mol (60.7533 without restraints) Performing minimization step: 4409. Total energy = 60.7396 kcal/mol (60.7378 without restraints) Performing minimization step: 4410. Total energy = 60.7242 kcal/mol (60.7223 without restraints) Performing minimization step: 4411. Total energy = 60.7087 kcal/mol (60.7069 without restraints) Performing minimization step: 4412. Total energy = 60.6933 kcal/mol (60.6914 without restraints) Performing minimization step: 4413. Total energy = 60.6778 kcal/mol (60.6760 without restraints) Performing minimization step: 4414. Total energy = 60.6624 kcal/mol (60.6606 without restraints) Performing minimization step: 4415. Total energy = 60.6470 kcal/mol (60.6451 without restraints) Performing minimization step: 4416. Total energy = 60.6315 kcal/mol (60.6297 without restraints) Performing minimization step: 4417. Total energy = 60.6161 kcal/mol (60.6143 without restraints) Performing minimization step: 4418. Total energy = 60.6008 kcal/mol (60.5989 without restraints) Performing minimization step: 4419. Total energy = 60.5854 kcal/mol (60.5836 without restraints) Performing minimization step: 4420. Total energy = 60.5700 kcal/mol (60.5682 without restraints) Performing minimization step: 4421. Total energy = 60.5547 kcal/mol (60.5528 without restraints) Performing minimization step: 4422. Total energy = 60.5393 kcal/mol (60.5375 without restraints) Performing minimization step: 4423. Total energy = 60.5240 kcal/mol (60.5222 without restraints) Performing minimization step: 4424. Total energy = 60.5086 kcal/mol (60.5068 without restraints) Performing minimization step: 4425. Total energy = 60.4933 kcal/mol (60.4915 without restraints) Performing minimization step: 4426. Total energy = 60.4780 kcal/mol (60.4762 without restraints) Performing minimization step: 4427. Total energy = 60.4627 kcal/mol (60.4609 without restraints) Performing minimization step: 4428. Total energy = 60.4475 kcal/mol (60.4457 without restraints) Performing minimization step: 4429. Total energy = 60.4322 kcal/mol (60.4304 without restraints) Performing minimization step: 4430. Total energy = 60.4169 kcal/mol (60.4151 without restraints) Performing minimization step: 4431. Total energy = 60.4017 kcal/mol (60.3999 without restraints) Performing minimization step: 4432. Total energy = 60.3864 kcal/mol (60.3846 without restraints) Performing minimization step: 4433. Total energy = 60.3712 kcal/mol (60.3694 without restraints) Performing minimization step: 4434. Total energy = 60.3560 kcal/mol (60.3542 without restraints) Performing minimization step: 4435. Total energy = 60.3408 kcal/mol (60.3390 without restraints) Performing minimization step: 4436. Total energy = 60.3256 kcal/mol (60.3238 without restraints) Performing minimization step: 4437. Total energy = 60.3104 kcal/mol (60.3086 without restraints) Performing minimization step: 4438. Total energy = 60.2952 kcal/mol (60.2934 without restraints) Performing minimization step: 4439. Total energy = 60.2801 kcal/mol (60.2783 without restraints) Performing minimization step: 4440. Total energy = 60.2649 kcal/mol (60.2631 without restraints) Performing minimization step: 4441. Total energy = 60.2498 kcal/mol (60.2480 without restraints) Performing minimization step: 4442. Total energy = 60.2346 kcal/mol (60.2328 without restraints) Performing minimization step: 4443. Total energy = 60.2195 kcal/mol (60.2177 without restraints) Performing minimization step: 4444. Total energy = 60.2044 kcal/mol (60.2026 without restraints) Performing minimization step: 4445. Total energy = 60.1893 kcal/mol (60.1875 without restraints) Performing minimization step: 4446. Total energy = 60.1742 kcal/mol (60.1724 without restraints) Performing minimization step: 4447. Total energy = 60.1591 kcal/mol (60.1573 without restraints) Performing minimization step: 4448. Total energy = 60.1440 kcal/mol (60.1423 without restraints) Performing minimization step: 4449. Total energy = 60.1290 kcal/mol (60.1272 without restraints) Performing minimization step: 4450. Total energy = 60.1139 kcal/mol (60.1122 without restraints) Performing minimization step: 4451. Total energy = 60.0989 kcal/mol (60.0971 without restraints) Performing minimization step: 4452. Total energy = 60.0839 kcal/mol (60.0821 without restraints) Performing minimization step: 4453. Total energy = 60.0689 kcal/mol (60.0671 without restraints) Performing minimization step: 4454. Total energy = 60.0538 kcal/mol (60.0521 without restraints) Performing minimization step: 4455. Total energy = 60.0389 kcal/mol (60.0371 without restraints) Performing minimization step: 4456. Total energy = 60.0239 kcal/mol (60.0221 without restraints) Performing minimization step: 4457. Total energy = 60.0089 kcal/mol (60.0071 without restraints) Performing minimization step: 4458. Total energy = 59.9939 kcal/mol (59.9922 without restraints) Performing minimization step: 4459. Total energy = 59.9790 kcal/mol (59.9772 without restraints) Performing minimization step: 4460. Total energy = 59.9640 kcal/mol (59.9623 without restraints) Performing minimization step: 4461. Total energy = 59.9491 kcal/mol (59.9473 without restraints) Performing minimization step: 4462. Total energy = 59.9342 kcal/mol (59.9324 without restraints) Performing minimization step: 4463. Total energy = 59.9193 kcal/mol (59.9175 without restraints) Performing minimization step: 4464. Total energy = 59.9044 kcal/mol (59.9026 without restraints) Performing minimization step: 4465. Total energy = 59.8895 kcal/mol (59.8877 without restraints) Performing minimization step: 4466. Total energy = 59.8746 kcal/mol (59.8728 without restraints) Performing minimization step: 4467. Total energy = 59.8597 kcal/mol (59.8580 without restraints) Performing minimization step: 4468. Total energy = 59.8449 kcal/mol (59.8431 without restraints) Performing minimization step: 4469. Total energy = 59.8300 kcal/mol (59.8283 without restraints) Performing minimization step: 4470. Total energy = 59.8152 kcal/mol (59.8134 without restraints) Performing minimization step: 4471. Total energy = 59.8003 kcal/mol (59.7986 without restraints) Performing minimization step: 4472. Total energy = 59.7855 kcal/mol (59.7838 without restraints) Performing minimization step: 4473. Total energy = 59.7707 kcal/mol (59.7690 without restraints) Performing minimization step: 4474. Total energy = 59.7559 kcal/mol (59.7542 without restraints) Performing minimization step: 4475. Total energy = 59.7411 kcal/mol (59.7394 without restraints) Performing minimization step: 4476. Total energy = 59.7264 kcal/mol (59.7246 without restraints) Performing minimization step: 4477. Total energy = 59.7116 kcal/mol (59.7098 without restraints) Performing minimization step: 4478. Total energy = 59.6968 kcal/mol (59.6951 without restraints) Performing minimization step: 4479. Total energy = 59.6821 kcal/mol (59.6804 without restraints) Performing minimization step: 4480. Total energy = 59.6674 kcal/mol (59.6656 without restraints) Performing minimization step: 4481. Total energy = 59.6526 kcal/mol (59.6509 without restraints) Performing minimization step: 4482. Total energy = 59.6379 kcal/mol (59.6362 without restraints) Performing minimization step: 4483. Total energy = 59.6232 kcal/mol (59.6215 without restraints) Performing minimization step: 4484. Total energy = 59.6085 kcal/mol (59.6068 without restraints) Performing minimization step: 4485. Total energy = 59.5938 kcal/mol (59.5921 without restraints) Performing minimization step: 4486. Total energy = 59.5792 kcal/mol (59.5774 without restraints) Performing minimization step: 4487. Total energy = 59.5645 kcal/mol (59.5628 without restraints) Performing minimization step: 4488. Total energy = 59.5499 kcal/mol (59.5481 without restraints) Performing minimization step: 4489. Total energy = 59.5352 kcal/mol (59.5335 without restraints) Performing minimization step: 4490. Total energy = 59.5206 kcal/mol (59.5189 without restraints) Performing minimization step: 4491. Total energy = 59.5060 kcal/mol (59.5042 without restraints) Performing minimization step: 4492. Total energy = 59.4914 kcal/mol (59.4896 without restraints) Performing minimization step: 4493. Total energy = 59.4768 kcal/mol (59.4750 without restraints) Performing minimization step: 4494. Total energy = 59.4622 kcal/mol (59.4604 without restraints) Performing minimization step: 4495. Total energy = 59.4476 kcal/mol (59.4459 without restraints) Performing minimization step: 4496. Total energy = 59.4330 kcal/mol (59.4313 without restraints) Performing minimization step: 4497. Total energy = 59.4185 kcal/mol (59.4167 without restraints) Performing minimization step: 4498. Total energy = 59.4039 kcal/mol (59.4022 without restraints) Performing minimization step: 4499. Total energy = 59.3894 kcal/mol (59.3877 without restraints) Performing minimization step: 4500. Total energy = 59.3748 kcal/mol (59.3731 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 59.3603 kcal/mol (59.3586 without restraints) Performing minimization step: 4502. Total energy = 59.3458 kcal/mol (59.3441 without restraints) Performing minimization step: 4503. Total energy = 59.3313 kcal/mol (59.3296 without restraints) Performing minimization step: 4504. Total energy = 59.3168 kcal/mol (59.3151 without restraints) Performing minimization step: 4505. Total energy = 59.3024 kcal/mol (59.3007 without restraints) Performing minimization step: 4506. Total energy = 59.2879 kcal/mol (59.2862 without restraints) Performing minimization step: 4507. Total energy = 59.2734 kcal/mol (59.2717 without restraints) Performing minimization step: 4508. Total energy = 59.2590 kcal/mol (59.2573 without restraints) Performing minimization step: 4509. Total energy = 59.2446 kcal/mol (59.2429 without restraints) Performing minimization step: 4510. Total energy = 59.2301 kcal/mol (59.2284 without restraints) Performing minimization step: 4511. Total energy = 59.2157 kcal/mol (59.2140 without restraints) Performing minimization step: 4512. Total energy = 59.2013 kcal/mol (59.1996 without restraints) Performing minimization step: 4513. Total energy = 59.1869 kcal/mol (59.1852 without restraints) Performing minimization step: 4514. Total energy = 59.1725 kcal/mol (59.1708 without restraints) Performing minimization step: 4515. Total energy = 59.1582 kcal/mol (59.1565 without restraints) Performing minimization step: 4516. Total energy = 59.1438 kcal/mol (59.1421 without restraints) Performing minimization step: 4517. Total energy = 59.1294 kcal/mol (59.1278 without restraints) Performing minimization step: 4518. Total energy = 59.1151 kcal/mol (59.1134 without restraints) Performing minimization step: 4519. Total energy = 59.1008 kcal/mol (59.0991 without restraints) Performing minimization step: 4520. Total energy = 59.0865 kcal/mol (59.0848 without restraints) Performing minimization step: 4521. Total energy = 59.0721 kcal/mol (59.0705 without restraints) Performing minimization step: 4522. Total energy = 59.0578 kcal/mol (59.0562 without restraints) Performing minimization step: 4523. Total energy = 59.0435 kcal/mol (59.0419 without restraints) Performing minimization step: 4524. Total energy = 59.0293 kcal/mol (59.0276 without restraints) Performing minimization step: 4525. Total energy = 59.0150 kcal/mol (59.0133 without restraints) Performing minimization step: 4526. Total energy = 59.0007 kcal/mol (58.9991 without restraints) Performing minimization step: 4527. Total energy = 58.9865 kcal/mol (58.9848 without restraints) Performing minimization step: 4528. Total energy = 58.9722 kcal/mol (58.9706 without restraints) Performing minimization step: 4529. Total energy = 58.9580 kcal/mol (58.9563 without restraints) Performing minimization step: 4530. Total energy = 58.9438 kcal/mol (58.9421 without restraints) Performing minimization step: 4531. Total energy = 58.9296 kcal/mol (58.9279 without restraints) Performing minimization step: 4532. Total energy = 58.9154 kcal/mol (58.9137 without restraints) Performing minimization step: 4533. Total energy = 58.9012 kcal/mol (58.8995 without restraints) Performing minimization step: 4534. Total energy = 58.8870 kcal/mol (58.8853 without restraints) Performing minimization step: 4535. Total energy = 58.8729 kcal/mol (58.8712 without restraints) Performing minimization step: 4536. Total energy = 58.8587 kcal/mol (58.8571 without restraints) Performing minimization step: 4537. Total energy = 58.8446 kcal/mol (58.8429 without restraints) Performing minimization step: 4538. Total energy = 58.8304 kcal/mol (58.8288 without restraints) Performing minimization step: 4539. Total energy = 58.8163 kcal/mol (58.8146 without restraints) Performing minimization step: 4540. Total energy = 58.8022 kcal/mol (58.8005 without restraints) Performing minimization step: 4541. Total energy = 58.7881 kcal/mol (58.7864 without restraints) Performing minimization step: 4542. Total energy = 58.7740 kcal/mol (58.7723 without restraints) Performing minimization step: 4543. Total energy = 58.7599 kcal/mol (58.7582 without restraints) Performing minimization step: 4544. Total energy = 58.7458 kcal/mol (58.7442 without restraints) Performing minimization step: 4545. Total energy = 58.7317 kcal/mol (58.7301 without restraints) Performing minimization step: 4546. Total energy = 58.7177 kcal/mol (58.7160 without restraints) Performing minimization step: 4547. Total energy = 58.7036 kcal/mol (58.7020 without restraints) Performing minimization step: 4548. Total energy = 58.6896 kcal/mol (58.6879 without restraints) Performing minimization step: 4549. Total energy = 58.6756 kcal/mol (58.6739 without restraints) Performing minimization step: 4550. Total energy = 58.6616 kcal/mol (58.6599 without restraints) Performing minimization step: 4551. Total energy = 58.6476 kcal/mol (58.6459 without restraints) Performing minimization step: 4552. Total energy = 58.6336 kcal/mol (58.6319 without restraints) Performing minimization step: 4553. Total energy = 58.6196 kcal/mol (58.6179 without restraints) Performing minimization step: 4554. Total energy = 58.6056 kcal/mol (58.6039 without restraints) Performing minimization step: 4555. Total energy = 58.5916 kcal/mol (58.5900 without restraints) Performing minimization step: 4556. Total energy = 58.5777 kcal/mol (58.5760 without restraints) Performing minimization step: 4557. Total energy = 58.5637 kcal/mol (58.5621 without restraints) Performing minimization step: 4558. Total energy = 58.5498 kcal/mol (58.5481 without restraints) Performing minimization step: 4559. Total energy = 58.5358 kcal/mol (58.5342 without restraints) Performing minimization step: 4560. Total energy = 58.5219 kcal/mol (58.5203 without restraints) Performing minimization step: 4561. Total energy = 58.5080 kcal/mol (58.5064 without restraints) Performing minimization step: 4562. Total energy = 58.4941 kcal/mol (58.4925 without restraints) Performing minimization step: 4563. Total energy = 58.4802 kcal/mol (58.4786 without restraints) Performing minimization step: 4564. Total energy = 58.4664 kcal/mol (58.4647 without restraints) Performing minimization step: 4565. Total energy = 58.4525 kcal/mol (58.4509 without restraints) Performing minimization step: 4566. Total energy = 58.4386 kcal/mol (58.4370 without restraints) Performing minimization step: 4567. Total energy = 58.4248 kcal/mol (58.4231 without restraints) Performing minimization step: 4568. Total energy = 58.4109 kcal/mol (58.4093 without restraints) Performing minimization step: 4569. Total energy = 58.3971 kcal/mol (58.3955 without restraints) Performing minimization step: 4570. Total energy = 58.3833 kcal/mol (58.3817 without restraints) Performing minimization step: 4571. Total energy = 58.3695 kcal/mol (58.3679 without restraints) Performing minimization step: 4572. Total energy = 58.3557 kcal/mol (58.3541 without restraints) Performing minimization step: 4573. Total energy = 58.3419 kcal/mol (58.3403 without restraints) Performing minimization step: 4574. Total energy = 58.3281 kcal/mol (58.3265 without restraints) Performing minimization step: 4575. Total energy = 58.3144 kcal/mol (58.3127 without restraints) Performing minimization step: 4576. Total energy = 58.3006 kcal/mol (58.2990 without restraints) Performing minimization step: 4577. Total energy = 58.2869 kcal/mol (58.2852 without restraints) Performing minimization step: 4578. Total energy = 58.2731 kcal/mol (58.2715 without restraints) Performing minimization step: 4579. Total energy = 58.2594 kcal/mol (58.2578 without restraints) Performing minimization step: 4580. Total energy = 58.2457 kcal/mol (58.2441 without restraints) Performing minimization step: 4581. Total energy = 58.2320 kcal/mol (58.2303 without restraints) Performing minimization step: 4582. Total energy = 58.2183 kcal/mol (58.2166 without restraints) Performing minimization step: 4583. Total energy = 58.2046 kcal/mol (58.2030 without restraints) Performing minimization step: 4584. Total energy = 58.1909 kcal/mol (58.1893 without restraints) Performing minimization step: 4585. Total energy = 58.1772 kcal/mol (58.1756 without restraints) Performing minimization step: 4586. Total energy = 58.1636 kcal/mol (58.1620 without restraints) Performing minimization step: 4587. Total energy = 58.1499 kcal/mol (58.1483 without restraints) Performing minimization step: 4588. Total energy = 58.1363 kcal/mol (58.1347 without restraints) Performing minimization step: 4589. Total energy = 58.1227 kcal/mol (58.1210 without restraints) Performing minimization step: 4590. Total energy = 58.1090 kcal/mol (58.1074 without restraints) Performing minimization step: 4591. Total energy = 58.0954 kcal/mol (58.0938 without restraints) Performing minimization step: 4592. Total energy = 58.0818 kcal/mol (58.0802 without restraints) Performing minimization step: 4593. Total energy = 58.0682 kcal/mol (58.0666 without restraints) Performing minimization step: 4594. Total energy = 58.0547 kcal/mol (58.0531 without restraints) Performing minimization step: 4595. Total energy = 58.0411 kcal/mol (58.0395 without restraints) Performing minimization step: 4596. Total energy = 58.0275 kcal/mol (58.0259 without restraints) Performing minimization step: 4597. Total energy = 58.0140 kcal/mol (58.0124 without restraints) Performing minimization step: 4598. Total energy = 58.0004 kcal/mol (57.9988 without restraints) Performing minimization step: 4599. Total energy = 57.9869 kcal/mol (57.9853 without restraints) Performing minimization step: 4600. Total energy = 57.9734 kcal/mol (57.9718 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 57.9599 kcal/mol (57.9583 without restraints) Performing minimization step: 4602. Total energy = 57.9464 kcal/mol (57.9448 without restraints) Performing minimization step: 4603. Total energy = 57.9329 kcal/mol (57.9313 without restraints) Performing minimization step: 4604. Total energy = 57.9194 kcal/mol (57.9178 without restraints) Performing minimization step: 4605. Total energy = 57.9059 kcal/mol (57.9043 without restraints) Performing minimization step: 4606. Total energy = 57.8925 kcal/mol (57.8909 without restraints) Performing minimization step: 4607. Total energy = 57.8790 kcal/mol (57.8774 without restraints) Performing minimization step: 4608. Total energy = 57.8656 kcal/mol (57.8640 without restraints) Performing minimization step: 4609. Total energy = 57.8521 kcal/mol (57.8506 without restraints) Performing minimization step: 4610. Total energy = 57.8387 kcal/mol (57.8371 without restraints) Performing minimization step: 4611. Total energy = 57.8253 kcal/mol (57.8237 without restraints) Performing minimization step: 4612. Total energy = 57.8119 kcal/mol (57.8103 without restraints) Performing minimization step: 4613. Total energy = 57.7985 kcal/mol (57.7969 without restraints) Performing minimization step: 4614. Total energy = 57.7851 kcal/mol (57.7835 without restraints) Performing minimization step: 4615. Total energy = 57.7717 kcal/mol (57.7702 without restraints) Performing minimization step: 4616. Total energy = 57.7584 kcal/mol (57.7568 without restraints) Performing minimization step: 4617. Total energy = 57.7450 kcal/mol (57.7435 without restraints) Performing minimization step: 4618. Total energy = 57.7317 kcal/mol (57.7301 without restraints) Performing minimization step: 4619. Total energy = 57.7184 kcal/mol (57.7168 without restraints) Performing minimization step: 4620. Total energy = 57.7050 kcal/mol (57.7035 without restraints) Performing minimization step: 4621. Total energy = 57.6917 kcal/mol (57.6901 without restraints) Performing minimization step: 4622. Total energy = 57.6784 kcal/mol (57.6768 without restraints) Performing minimization step: 4623. Total energy = 57.6651 kcal/mol (57.6635 without restraints) Performing minimization step: 4624. Total energy = 57.6518 kcal/mol (57.6503 without restraints) Performing minimization step: 4625. Total energy = 57.6385 kcal/mol (57.6370 without restraints) Performing minimization step: 4626. Total energy = 57.6253 kcal/mol (57.6237 without restraints) Performing minimization step: 4627. Total energy = 57.6120 kcal/mol (57.6105 without restraints) Performing minimization step: 4628. Total energy = 57.5988 kcal/mol (57.5972 without restraints) Performing minimization step: 4629. Total energy = 57.5855 kcal/mol (57.5840 without restraints) Performing minimization step: 4630. Total energy = 57.5723 kcal/mol (57.5708 without restraints) Performing minimization step: 4631. Total energy = 57.5591 kcal/mol (57.5575 without restraints) Performing minimization step: 4632. Total energy = 57.5459 kcal/mol (57.5443 without restraints) Performing minimization step: 4633. Total energy = 57.5327 kcal/mol (57.5311 without restraints) Performing minimization step: 4634. Total energy = 57.5195 kcal/mol (57.5179 without restraints) Performing minimization step: 4635. Total energy = 57.5063 kcal/mol (57.5048 without restraints) Performing minimization step: 4636. Total energy = 57.4932 kcal/mol (57.4916 without restraints) Performing minimization step: 4637. Total energy = 57.4800 kcal/mol (57.4784 without restraints) Performing minimization step: 4638. Total energy = 57.4668 kcal/mol (57.4653 without restraints) Performing minimization step: 4639. Total energy = 57.4537 kcal/mol (57.4522 without restraints) Performing minimization step: 4640. Total energy = 57.4406 kcal/mol (57.4390 without restraints) Performing minimization step: 4641. Total energy = 57.4274 kcal/mol (57.4259 without restraints) Performing minimization step: 4642. Total energy = 57.4143 kcal/mol (57.4128 without restraints) Performing minimization step: 4643. Total energy = 57.4012 kcal/mol (57.3997 without restraints) Performing minimization step: 4644. Total energy = 57.3881 kcal/mol (57.3866 without restraints) Performing minimization step: 4645. Total energy = 57.3751 kcal/mol (57.3735 without restraints) Performing minimization step: 4646. Total energy = 57.3620 kcal/mol (57.3604 without restraints) Performing minimization step: 4647. Total energy = 57.3489 kcal/mol (57.3474 without restraints) Performing minimization step: 4648. Total energy = 57.3359 kcal/mol (57.3343 without restraints) Performing minimization step: 4649. Total energy = 57.3228 kcal/mol (57.3213 without restraints) Performing minimization step: 4650. Total energy = 57.3098 kcal/mol (57.3083 without restraints) Performing minimization step: 4651. Total energy = 57.2968 kcal/mol (57.2952 without restraints) Performing minimization step: 4652. Total energy = 57.2838 kcal/mol (57.2822 without restraints) Performing minimization step: 4653. Total energy = 57.2707 kcal/mol (57.2692 without restraints) Performing minimization step: 4654. Total energy = 57.2578 kcal/mol (57.2562 without restraints) Performing minimization step: 4655. Total energy = 57.2448 kcal/mol (57.2432 without restraints) Performing minimization step: 4656. Total energy = 57.2318 kcal/mol (57.2303 without restraints) Performing minimization step: 4657. Total energy = 57.2188 kcal/mol (57.2173 without restraints) Performing minimization step: 4658. Total energy = 57.2059 kcal/mol (57.2043 without restraints) Performing minimization step: 4659. Total energy = 57.1929 kcal/mol (57.1914 without restraints) Performing minimization step: 4660. Total energy = 57.1800 kcal/mol (57.1784 without restraints) Performing minimization step: 4661. Total energy = 57.1670 kcal/mol (57.1655 without restraints) Performing minimization step: 4662. Total energy = 57.1541 kcal/mol (57.1526 without restraints) Performing minimization step: 4663. Total energy = 57.1412 kcal/mol (57.1397 without restraints) Performing minimization step: 4664. Total energy = 57.1283 kcal/mol (57.1268 without restraints) Performing minimization step: 4665. Total energy = 57.1154 kcal/mol (57.1139 without restraints) Performing minimization step: 4666. Total energy = 57.1025 kcal/mol (57.1010 without restraints) Performing minimization step: 4667. Total energy = 57.0897 kcal/mol (57.0882 without restraints) Performing minimization step: 4668. Total energy = 57.0768 kcal/mol (57.0753 without restraints) Performing minimization step: 4669. Total energy = 57.0640 kcal/mol (57.0624 without restraints) Performing minimization step: 4670. Total energy = 57.0511 kcal/mol (57.0496 without restraints) Performing minimization step: 4671. Total energy = 57.0383 kcal/mol (57.0368 without restraints) Performing minimization step: 4672. Total energy = 57.0255 kcal/mol (57.0239 without restraints) Performing minimization step: 4673. Total energy = 57.0126 kcal/mol (57.0111 without restraints) Performing minimization step: 4674. Total energy = 56.9998 kcal/mol (56.9983 without restraints) Performing minimization step: 4675. Total energy = 56.9870 kcal/mol (56.9855 without restraints) Performing minimization step: 4676. Total energy = 56.9743 kcal/mol (56.9727 without restraints) Performing minimization step: 4677. Total energy = 56.9615 kcal/mol (56.9600 without restraints) Performing minimization step: 4678. Total energy = 56.9487 kcal/mol (56.9472 without restraints) Performing minimization step: 4679. Total energy = 56.9360 kcal/mol (56.9345 without restraints) Performing minimization step: 4680. Total energy = 56.9232 kcal/mol (56.9217 without restraints) Performing minimization step: 4681. Total energy = 56.9105 kcal/mol (56.9090 without restraints) Performing minimization step: 4682. Total energy = 56.8977 kcal/mol (56.8962 without restraints) Performing minimization step: 4683. Total energy = 56.8850 kcal/mol (56.8835 without restraints) Performing minimization step: 4684. Total energy = 56.8723 kcal/mol (56.8708 without restraints) Performing minimization step: 4685. Total energy = 56.8596 kcal/mol (56.8581 without restraints) Performing minimization step: 4686. Total energy = 56.8469 kcal/mol (56.8454 without restraints) Performing minimization step: 4687. Total energy = 56.8342 kcal/mol (56.8327 without restraints) Performing minimization step: 4688. Total energy = 56.8216 kcal/mol (56.8201 without restraints) Performing minimization step: 4689. Total energy = 56.8089 kcal/mol (56.8074 without restraints) Performing minimization step: 4690. Total energy = 56.7962 kcal/mol (56.7948 without restraints) Performing minimization step: 4691. Total energy = 56.7836 kcal/mol (56.7821 without restraints) Performing minimization step: 4692. Total energy = 56.7710 kcal/mol (56.7695 without restraints) Performing minimization step: 4693. Total energy = 56.7585 kcal/mol (56.7570 without restraints) Performing minimization step: 4694. Total energy = 56.7459 kcal/mol (56.7444 without restraints) Performing minimization step: 4695. Total energy = 56.7333 kcal/mol (56.7318 without restraints) Performing minimization step: 4696. Total energy = 56.7207 kcal/mol (56.7192 without restraints) Performing minimization step: 4697. Total energy = 56.7081 kcal/mol (56.7066 without restraints) Performing minimization step: 4698. Total energy = 56.6955 kcal/mol (56.6941 without restraints) Performing minimization step: 4699. Total energy = 56.6830 kcal/mol (56.6815 without restraints) Performing minimization step: 4700. Total energy = 56.6704 kcal/mol (56.6689 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 56.6579 kcal/mol (56.6564 without restraints) Performing minimization step: 4702. Total energy = 56.6453 kcal/mol (56.6438 without restraints) Performing minimization step: 4703. Total energy = 56.6328 kcal/mol (56.6313 without restraints) Performing minimization step: 4704. Total energy = 56.6203 kcal/mol (56.6188 without restraints) Performing minimization step: 4705. Total energy = 56.6078 kcal/mol (56.6063 without restraints) Performing minimization step: 4706. Total energy = 56.5953 kcal/mol (56.5938 without restraints) Performing minimization step: 4707. Total energy = 56.5828 kcal/mol (56.5813 without restraints) Performing minimization step: 4708. Total energy = 56.5703 kcal/mol (56.5688 without restraints) Performing minimization step: 4709. Total energy = 56.5578 kcal/mol (56.5563 without restraints) Performing minimization step: 4710. Total energy = 56.5453 kcal/mol (56.5439 without restraints) Performing minimization step: 4711. Total energy = 56.5329 kcal/mol (56.5314 without restraints) Performing minimization step: 4712. Total energy = 56.5204 kcal/mol (56.5190 without restraints) Performing minimization step: 4713. Total energy = 56.5080 kcal/mol (56.5065 without restraints) Performing minimization step: 4714. Total energy = 56.4956 kcal/mol (56.4941 without restraints) Performing minimization step: 4715. Total energy = 56.4834 kcal/mol (56.4819 without restraints) Performing minimization step: 4716. Total energy = 56.4710 kcal/mol (56.4695 without restraints) Performing minimization step: 4717. Total energy = 56.4586 kcal/mol (56.4571 without restraints) Performing minimization step: 4718. Total energy = 56.4462 kcal/mol (56.4447 without restraints) Performing minimization step: 4719. Total energy = 56.4338 kcal/mol (56.4323 without restraints) Performing minimization step: 4720. Total energy = 56.4214 kcal/mol (56.4199 without restraints) Performing minimization step: 4721. Total energy = 56.4090 kcal/mol (56.4076 without restraints) Performing minimization step: 4722. Total energy = 56.3967 kcal/mol (56.3952 without restraints) Performing minimization step: 4723. Total energy = 56.3843 kcal/mol (56.3829 without restraints) Performing minimization step: 4724. Total energy = 56.3720 kcal/mol (56.3706 without restraints) Performing minimization step: 4725. Total energy = 56.3597 kcal/mol (56.3582 without restraints) Performing minimization step: 4726. Total energy = 56.3474 kcal/mol (56.3459 without restraints) Performing minimization step: 4727. Total energy = 56.3351 kcal/mol (56.3336 without restraints) Performing minimization step: 4728. Total energy = 56.3228 kcal/mol (56.3213 without restraints) Performing minimization step: 4729. Total energy = 56.3105 kcal/mol (56.3090 without restraints) Performing minimization step: 4730. Total energy = 56.2982 kcal/mol (56.2967 without restraints) Performing minimization step: 4731. Total energy = 56.2859 kcal/mol (56.2845 without restraints) Performing minimization step: 4732. Total energy = 56.2738 kcal/mol (56.2724 without restraints) Performing minimization step: 4733. Total energy = 56.2616 kcal/mol (56.2601 without restraints) Performing minimization step: 4734. Total energy = 56.2493 kcal/mol (56.2479 without restraints) Performing minimization step: 4735. Total energy = 56.2371 kcal/mol (56.2357 without restraints) Performing minimization step: 4736. Total energy = 56.2249 kcal/mol (56.2234 without restraints) Performing minimization step: 4737. Total energy = 56.2127 kcal/mol (56.2112 without restraints) Performing minimization step: 4738. Total energy = 56.2005 kcal/mol (56.1990 without restraints) Performing minimization step: 4739. Total energy = 56.1883 kcal/mol (56.1868 without restraints) Performing minimization step: 4740. Total energy = 56.1761 kcal/mol (56.1746 without restraints) Performing minimization step: 4741. Total energy = 56.1639 kcal/mol (56.1625 without restraints) Performing minimization step: 4742. Total energy = 56.1517 kcal/mol (56.1503 without restraints) Performing minimization step: 4743. Total energy = 56.1396 kcal/mol (56.1381 without restraints) Performing minimization step: 4744. Total energy = 56.1274 kcal/mol (56.1260 without restraints) Performing minimization step: 4745. Total energy = 56.1153 kcal/mol (56.1139 without restraints) Performing minimization step: 4746. Total energy = 56.1032 kcal/mol (56.1017 without restraints) Performing minimization step: 4747. Total energy = 56.0910 kcal/mol (56.0896 without restraints) Performing minimization step: 4748. Total energy = 56.0789 kcal/mol (56.0775 without restraints) Performing minimization step: 4749. Total energy = 56.0668 kcal/mol (56.0654 without restraints) Performing minimization step: 4750. Total energy = 56.0547 kcal/mol (56.0533 without restraints) Performing minimization step: 4751. Total energy = 56.0426 kcal/mol (56.0412 without restraints) Performing minimization step: 4752. Total energy = 56.0306 kcal/mol (56.0291 without restraints) Performing minimization step: 4753. Total energy = 56.0185 kcal/mol (56.0171 without restraints) Performing minimization step: 4754. Total energy = 56.0064 kcal/mol (56.0050 without restraints) Performing minimization step: 4755. Total energy = 55.9944 kcal/mol (55.9930 without restraints) Performing minimization step: 4756. Total energy = 55.9823 kcal/mol (55.9809 without restraints) Performing minimization step: 4757. Total energy = 55.9703 kcal/mol (55.9689 without restraints) Performing minimization step: 4758. Total energy = 55.9583 kcal/mol (55.9569 without restraints) Performing minimization step: 4759. Total energy = 55.9463 kcal/mol (55.9449 without restraints) Performing minimization step: 4760. Total energy = 55.9343 kcal/mol (55.9329 without restraints) Performing minimization step: 4761. Total energy = 55.9223 kcal/mol (55.9209 without restraints) Performing minimization step: 4762. Total energy = 55.9103 kcal/mol (55.9089 without restraints) Performing minimization step: 4763. Total energy = 55.8983 kcal/mol (55.8969 without restraints) Performing minimization step: 4764. Total energy = 55.8864 kcal/mol (55.8849 without restraints) Performing minimization step: 4765. Total energy = 55.8744 kcal/mol (55.8730 without restraints) Performing minimization step: 4766. Total energy = 55.8624 kcal/mol (55.8610 without restraints) Performing minimization step: 4767. Total energy = 55.8505 kcal/mol (55.8491 without restraints) Performing minimization step: 4768. Total energy = 55.8386 kcal/mol (55.8372 without restraints) Performing minimization step: 4769. Total energy = 55.8267 kcal/mol (55.8252 without restraints) Performing minimization step: 4770. Total energy = 55.8147 kcal/mol (55.8133 without restraints) Performing minimization step: 4771. Total energy = 55.8028 kcal/mol (55.8014 without restraints) Performing minimization step: 4772. Total energy = 55.7909 kcal/mol (55.7895 without restraints) Performing minimization step: 4773. Total energy = 55.7791 kcal/mol (55.7777 without restraints) Performing minimization step: 4774. Total energy = 55.7672 kcal/mol (55.7658 without restraints) Performing minimization step: 4775. Total energy = 55.7553 kcal/mol (55.7539 without restraints) Performing minimization step: 4776. Total energy = 55.7435 kcal/mol (55.7421 without restraints) Performing minimization step: 4777. Total energy = 55.7316 kcal/mol (55.7302 without restraints) Performing minimization step: 4778. Total energy = 55.7198 kcal/mol (55.7184 without restraints) Performing minimization step: 4779. Total energy = 55.7079 kcal/mol (55.7065 without restraints) Performing minimization step: 4780. Total energy = 55.6961 kcal/mol (55.6947 without restraints) Performing minimization step: 4781. Total energy = 55.6843 kcal/mol (55.6829 without restraints) Performing minimization step: 4782. Total energy = 55.6725 kcal/mol (55.6711 without restraints) Performing minimization step: 4783. Total energy = 55.6607 kcal/mol (55.6593 without restraints) Performing minimization step: 4784. Total energy = 55.6489 kcal/mol (55.6475 without restraints) Performing minimization step: 4785. Total energy = 55.6371 kcal/mol (55.6358 without restraints) Performing minimization step: 4786. Total energy = 55.6254 kcal/mol (55.6240 without restraints) Performing minimization step: 4787. Total energy = 55.6136 kcal/mol (55.6122 without restraints) Performing minimization step: 4788. Total energy = 55.6019 kcal/mol (55.6005 without restraints) Performing minimization step: 4789. Total energy = 55.5901 kcal/mol (55.5887 without restraints) Performing minimization step: 4790. Total energy = 55.5784 kcal/mol (55.5770 without restraints) Performing minimization step: 4791. Total energy = 55.5667 kcal/mol (55.5653 without restraints) Performing minimization step: 4792. Total energy = 55.5550 kcal/mol (55.5536 without restraints) Performing minimization step: 4793. Total energy = 55.5433 kcal/mol (55.5419 without restraints) Performing minimization step: 4794. Total energy = 55.5316 kcal/mol (55.5302 without restraints) Performing minimization step: 4795. Total energy = 55.5199 kcal/mol (55.5185 without restraints) Performing minimization step: 4796. Total energy = 55.5082 kcal/mol (55.5068 without restraints) Performing minimization step: 4797. Total energy = 55.4965 kcal/mol (55.4952 without restraints) Performing minimization step: 4798. Total energy = 55.4849 kcal/mol (55.4835 without restraints) Performing minimization step: 4799. Total energy = 55.4732 kcal/mol (55.4718 without restraints) Performing minimization step: 4800. Total energy = 55.4616 kcal/mol (55.4602 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 55.4499 kcal/mol (55.4486 without restraints) Performing minimization step: 4802. Total energy = 55.4383 kcal/mol (55.4370 without restraints) Performing minimization step: 4803. Total energy = 55.4267 kcal/mol (55.4253 without restraints) Performing minimization step: 4804. Total energy = 55.4151 kcal/mol (55.4137 without restraints) Performing minimization step: 4805. Total energy = 55.4035 kcal/mol (55.4021 without restraints) Performing minimization step: 4806. Total energy = 55.3919 kcal/mol (55.3906 without restraints) Performing minimization step: 4807. Total energy = 55.3803 kcal/mol (55.3790 without restraints) Performing minimization step: 4808. Total energy = 55.3688 kcal/mol (55.3674 without restraints) Performing minimization step: 4809. Total energy = 55.3572 kcal/mol (55.3558 without restraints) Performing minimization step: 4810. Total energy = 55.3457 kcal/mol (55.3443 without restraints) Performing minimization step: 4811. Total energy = 55.3341 kcal/mol (55.3328 without restraints) Performing minimization step: 4812. Total energy = 55.3226 kcal/mol (55.3212 without restraints) Performing minimization step: 4813. Total energy = 55.3111 kcal/mol (55.3097 without restraints) Performing minimization step: 4814. Total energy = 55.2995 kcal/mol (55.2982 without restraints) Performing minimization step: 4815. Total energy = 55.2880 kcal/mol (55.2867 without restraints) Performing minimization step: 4816. Total energy = 55.2765 kcal/mol (55.2752 without restraints) Performing minimization step: 4817. Total energy = 55.2650 kcal/mol (55.2637 without restraints) Performing minimization step: 4818. Total energy = 55.2536 kcal/mol (55.2522 without restraints) Performing minimization step: 4819. Total energy = 55.2421 kcal/mol (55.2407 without restraints) Performing minimization step: 4820. Total energy = 55.2306 kcal/mol (55.2293 without restraints) Performing minimization step: 4821. Total energy = 55.2192 kcal/mol (55.2178 without restraints) Performing minimization step: 4822. Total energy = 55.2077 kcal/mol (55.2064 without restraints) Performing minimization step: 4823. Total energy = 55.1963 kcal/mol (55.1949 without restraints) Performing minimization step: 4824. Total energy = 55.1849 kcal/mol (55.1835 without restraints) Performing minimization step: 4825. Total energy = 55.1734 kcal/mol (55.1721 without restraints) Performing minimization step: 4826. Total energy = 55.1620 kcal/mol (55.1607 without restraints) Performing minimization step: 4827. Total energy = 55.1506 kcal/mol (55.1493 without restraints) Performing minimization step: 4828. Total energy = 55.1392 kcal/mol (55.1379 without restraints) Performing minimization step: 4829. Total energy = 55.1279 kcal/mol (55.1265 without restraints) Performing minimization step: 4830. Total energy = 55.1165 kcal/mol (55.1151 without restraints) Performing minimization step: 4831. Total energy = 55.1051 kcal/mol (55.1038 without restraints) Performing minimization step: 4832. Total energy = 55.0938 kcal/mol (55.0924 without restraints) Performing minimization step: 4833. Total energy = 55.0824 kcal/mol (55.0811 without restraints) Performing minimization step: 4834. Total energy = 55.0711 kcal/mol (55.0697 without restraints) Performing minimization step: 4835. Total energy = 55.0597 kcal/mol (55.0584 without restraints) Performing minimization step: 4836. Total energy = 55.0484 kcal/mol (55.0471 without restraints) Performing minimization step: 4837. Total energy = 55.0371 kcal/mol (55.0358 without restraints) Performing minimization step: 4838. Total energy = 55.0258 kcal/mol (55.0245 without restraints) Performing minimization step: 4839. Total energy = 55.0145 kcal/mol (55.0132 without restraints) Performing minimization step: 4840. Total energy = 55.0032 kcal/mol (55.0019 without restraints) Performing minimization step: 4841. Total energy = 54.9919 kcal/mol (54.9906 without restraints) Performing minimization step: 4842. Total energy = 54.9807 kcal/mol (54.9793 without restraints) Performing minimization step: 4843. Total energy = 54.9694 kcal/mol (54.9681 without restraints) Performing minimization step: 4844. Total energy = 54.9582 kcal/mol (54.9568 without restraints) Performing minimization step: 4845. Total energy = 54.9469 kcal/mol (54.9456 without restraints) Performing minimization step: 4846. Total energy = 54.9357 kcal/mol (54.9344 without restraints) Performing minimization step: 4847. Total energy = 54.9245 kcal/mol (54.9231 without restraints) Performing minimization step: 4848. Total energy = 54.9132 kcal/mol (54.9119 without restraints) Performing minimization step: 4849. Total energy = 54.9020 kcal/mol (54.9007 without restraints) Performing minimization step: 4850. Total energy = 54.8908 kcal/mol (54.8895 without restraints) Performing minimization step: 4851. Total energy = 54.8797 kcal/mol (54.8783 without restraints) Performing minimization step: 4852. Total energy = 54.8685 kcal/mol (54.8671 without restraints) Performing minimization step: 4853. Total energy = 54.8573 kcal/mol (54.8560 without restraints) Performing minimization step: 4854. Total energy = 54.8461 kcal/mol (54.8448 without restraints) Performing minimization step: 4855. Total energy = 54.8350 kcal/mol (54.8337 without restraints) Performing minimization step: 4856. Total energy = 54.8238 kcal/mol (54.8225 without restraints) Performing minimization step: 4857. Total energy = 54.8127 kcal/mol (54.8114 without restraints) Performing minimization step: 4858. Total energy = 54.8016 kcal/mol (54.8003 without restraints) Performing minimization step: 4859. Total energy = 54.7904 kcal/mol (54.7891 without restraints) Performing minimization step: 4860. Total energy = 54.7793 kcal/mol (54.7780 without restraints) Performing minimization step: 4861. Total energy = 54.7682 kcal/mol (54.7669 without restraints) Performing minimization step: 4862. Total energy = 54.7571 kcal/mol (54.7558 without restraints) Performing minimization step: 4863. Total energy = 54.7461 kcal/mol (54.7447 without restraints) Performing minimization step: 4864. Total energy = 54.7350 kcal/mol (54.7337 without restraints) Performing minimization step: 4865. Total energy = 54.7239 kcal/mol (54.7226 without restraints) Performing minimization step: 4866. Total energy = 54.7128 kcal/mol (54.7115 without restraints) Performing minimization step: 4867. Total energy = 54.7018 kcal/mol (54.7005 without restraints) Performing minimization step: 4868. Total energy = 54.6908 kcal/mol (54.6895 without restraints) Performing minimization step: 4869. Total energy = 54.6797 kcal/mol (54.6784 without restraints) Performing minimization step: 4870. Total energy = 54.6687 kcal/mol (54.6674 without restraints) Performing minimization step: 4871. Total energy = 54.6577 kcal/mol (54.6564 without restraints) Performing minimization step: 4872. Total energy = 54.6467 kcal/mol (54.6454 without restraints) Performing minimization step: 4873. Total energy = 54.6357 kcal/mol (54.6344 without restraints) Performing minimization step: 4874. Total energy = 54.6247 kcal/mol (54.6234 without restraints) Performing minimization step: 4875. Total energy = 54.6137 kcal/mol (54.6124 without restraints) Performing minimization step: 4876. Total energy = 54.6027 kcal/mol (54.6014 without restraints) Performing minimization step: 4877. Total energy = 54.5918 kcal/mol (54.5905 without restraints) Performing minimization step: 4878. Total energy = 54.5810 kcal/mol (54.5797 without restraints) Performing minimization step: 4879. Total energy = 54.5701 kcal/mol (54.5688 without restraints) Performing minimization step: 4880. Total energy = 54.5591 kcal/mol (54.5578 without restraints) Performing minimization step: 4881. Total energy = 54.5482 kcal/mol (54.5469 without restraints) Performing minimization step: 4882. Total energy = 54.5373 kcal/mol (54.5360 without restraints) Performing minimization step: 4883. Total energy = 54.5264 kcal/mol (54.5251 without restraints) Performing minimization step: 4884. Total energy = 54.5155 kcal/mol (54.5142 without restraints) Performing minimization step: 4885. Total energy = 54.5046 kcal/mol (54.5033 without restraints) Performing minimization step: 4886. Total energy = 54.4937 kcal/mol (54.4924 without restraints) Performing minimization step: 4887. Total energy = 54.4828 kcal/mol (54.4815 without restraints) Performing minimization step: 4888. Total energy = 54.4719 kcal/mol (54.4706 without restraints) Performing minimization step: 4889. Total energy = 54.4611 kcal/mol (54.4598 without restraints) Performing minimization step: 4890. Total energy = 54.4502 kcal/mol (54.4489 without restraints) Performing minimization step: 4891. Total energy = 54.4394 kcal/mol (54.4381 without restraints) Performing minimization step: 4892. Total energy = 54.4285 kcal/mol (54.4273 without restraints) Performing minimization step: 4893. Total energy = 54.4177 kcal/mol (54.4164 without restraints) Performing minimization step: 4894. Total energy = 54.4069 kcal/mol (54.4056 without restraints) Performing minimization step: 4895. Total energy = 54.3961 kcal/mol (54.3948 without restraints) Performing minimization step: 4896. Total energy = 54.3853 kcal/mol (54.3840 without restraints) Performing minimization step: 4897. Total energy = 54.3745 kcal/mol (54.3732 without restraints) Performing minimization step: 4898. Total energy = 54.3637 kcal/mol (54.3624 without restraints) Performing minimization step: 4899. Total energy = 54.3529 kcal/mol (54.3517 without restraints) Performing minimization step: 4900. Total energy = 54.3422 kcal/mol (54.3409 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 54.3314 kcal/mol (54.3301 without restraints) Performing minimization step: 4902. Total energy = 54.3207 kcal/mol (54.3194 without restraints) Performing minimization step: 4903. Total energy = 54.3099 kcal/mol (54.3087 without restraints) Performing minimization step: 4904. Total energy = 54.2992 kcal/mol (54.2979 without restraints) Performing minimization step: 4905. Total energy = 54.2885 kcal/mol (54.2872 without restraints) Performing minimization step: 4906. Total energy = 54.2777 kcal/mol (54.2765 without restraints) Performing minimization step: 4907. Total energy = 54.2670 kcal/mol (54.2658 without restraints) Performing minimization step: 4908. Total energy = 54.2563 kcal/mol (54.2551 without restraints) Performing minimization step: 4909. Total energy = 54.2456 kcal/mol (54.2444 without restraints) Performing minimization step: 4910. Total energy = 54.2350 kcal/mol (54.2337 without restraints) Performing minimization step: 4911. Total energy = 54.2243 kcal/mol (54.2230 without restraints) Performing minimization step: 4912. Total energy = 54.2136 kcal/mol (54.2124 without restraints) Performing minimization step: 4913. Total energy = 54.2030 kcal/mol (54.2017 without restraints) Performing minimization step: 4914. Total energy = 54.1923 kcal/mol (54.1911 without restraints) Performing minimization step: 4915. Total energy = 54.1817 kcal/mol (54.1804 without restraints) Performing minimization step: 4916. Total energy = 54.1711 kcal/mol (54.1698 without restraints) Performing minimization step: 4917. Total energy = 54.1604 kcal/mol (54.1592 without restraints) Performing minimization step: 4918. Total energy = 54.1498 kcal/mol (54.1486 without restraints) Performing minimization step: 4919. Total energy = 54.1392 kcal/mol (54.1380 without restraints) Performing minimization step: 4920. Total energy = 54.1286 kcal/mol (54.1274 without restraints) Performing minimization step: 4921. Total energy = 54.1180 kcal/mol (54.1168 without restraints) Performing minimization step: 4922. Total energy = 54.1075 kcal/mol (54.1062 without restraints) Performing minimization step: 4923. Total energy = 54.0969 kcal/mol (54.0956 without restraints) Performing minimization step: 4924. Total energy = 54.0863 kcal/mol (54.0851 without restraints) Performing minimization step: 4925. Total energy = 54.0758 kcal/mol (54.0745 without restraints) Performing minimization step: 4926. Total energy = 54.0654 kcal/mol (54.0642 without restraints) Performing minimization step: 4927. Total energy = 54.0549 kcal/mol (54.0536 without restraints) Performing minimization step: 4928. Total energy = 54.0443 kcal/mol (54.0431 without restraints) Performing minimization step: 4929. Total energy = 54.0338 kcal/mol (54.0326 without restraints) Performing minimization step: 4930. Total energy = 54.0233 kcal/mol (54.0221 without restraints) Performing minimization step: 4931. Total energy = 54.0128 kcal/mol (54.0116 without restraints) Performing minimization step: 4932. Total energy = 54.0023 kcal/mol (54.0011 without restraints) Performing minimization step: 4933. Total energy = 53.9918 kcal/mol (53.9906 without restraints) Performing minimization step: 4934. Total energy = 53.9813 kcal/mol (53.9801 without restraints) Performing minimization step: 4935. Total energy = 53.9709 kcal/mol (53.9696 without restraints) Performing minimization step: 4936. Total energy = 53.9606 kcal/mol (53.9594 without restraints) Performing minimization step: 4937. Total energy = 53.9501 kcal/mol (53.9489 without restraints) Performing minimization step: 4938. Total energy = 53.9397 kcal/mol (53.9385 without restraints) Performing minimization step: 4939. Total energy = 53.9293 kcal/mol (53.9280 without restraints) Performing minimization step: 4940. Total energy = 53.9188 kcal/mol (53.9176 without restraints) Performing minimization step: 4941. Total energy = 53.9084 kcal/mol (53.9072 without restraints) Performing minimization step: 4942. Total energy = 53.8980 kcal/mol (53.8968 without restraints) Performing minimization step: 4943. Total energy = 53.8876 kcal/mol (53.8864 without restraints) Performing minimization step: 4944. Total energy = 53.8772 kcal/mol (53.8760 without restraints) Performing minimization step: 4945. Total energy = 53.8668 kcal/mol (53.8656 without restraints) Performing minimization step: 4946. Total energy = 53.8564 kcal/mol (53.8552 without restraints) Performing minimization step: 4947. Total energy = 53.8461 kcal/mol (53.8448 without restraints) Performing minimization step: 4948. Total energy = 53.8357 kcal/mol (53.8345 without restraints) Performing minimization step: 4949. Total energy = 53.8253 kcal/mol (53.8241 without restraints) Performing minimization step: 4950. Total energy = 53.8150 kcal/mol (53.8138 without restraints) Performing minimization step: 4951. Total energy = 53.8047 kcal/mol (53.8034 without restraints) Performing minimization step: 4952. Total energy = 53.7943 kcal/mol (53.7931 without restraints) Performing minimization step: 4953. Total energy = 53.7840 kcal/mol (53.7828 without restraints) Performing minimization step: 4954. Total energy = 53.7737 kcal/mol (53.7725 without restraints) Performing minimization step: 4955. Total energy = 53.7634 kcal/mol (53.7622 without restraints) Performing minimization step: 4956. Total energy = 53.7531 kcal/mol (53.7519 without restraints) Performing minimization step: 4957. Total energy = 53.7428 kcal/mol (53.7416 without restraints) Performing minimization step: 4958. Total energy = 53.7325 kcal/mol (53.7313 without restraints) Performing minimization step: 4959. Total energy = 53.7223 kcal/mol (53.7211 without restraints) Performing minimization step: 4960. Total energy = 53.7120 kcal/mol (53.7108 without restraints) Performing minimization step: 4961. Total energy = 53.7017 kcal/mol (53.7005 without restraints) Performing minimization step: 4962. Total energy = 53.6915 kcal/mol (53.6903 without restraints) Performing minimization step: 4963. Total energy = 53.6813 kcal/mol (53.6801 without restraints) Performing minimization step: 4964. Total energy = 53.6710 kcal/mol (53.6698 without restraints) Performing minimization step: 4965. Total energy = 53.6608 kcal/mol (53.6596 without restraints) Performing minimization step: 4966. Total energy = 53.6506 kcal/mol (53.6494 without restraints) Performing minimization step: 4967. Total energy = 53.6404 kcal/mol (53.6392 without restraints) Performing minimization step: 4968. Total energy = 53.6302 kcal/mol (53.6290 without restraints) Performing minimization step: 4969. Total energy = 53.6200 kcal/mol (53.6188 without restraints) Performing minimization step: 4970. Total energy = 53.6098 kcal/mol (53.6086 without restraints) Performing minimization step: 4971. Total energy = 53.5997 kcal/mol (53.5985 without restraints) Performing minimization step: 4972. Total energy = 53.5895 kcal/mol (53.5883 without restraints) Performing minimization step: 4973. Total energy = 53.5793 kcal/mol (53.5781 without restraints) Performing minimization step: 4974. Total energy = 53.5692 kcal/mol (53.5680 without restraints) Performing minimization step: 4975. Total energy = 53.5591 kcal/mol (53.5579 without restraints) Performing minimization step: 4976. Total energy = 53.5489 kcal/mol (53.5477 without restraints) Performing minimization step: 4977. Total energy = 53.5388 kcal/mol (53.5376 without restraints) Performing minimization step: 4978. Total energy = 53.5287 kcal/mol (53.5275 without restraints) Performing minimization step: 4979. Total energy = 53.5186 kcal/mol (53.5174 without restraints) Performing minimization step: 4980. Total energy = 53.5085 kcal/mol (53.5073 without restraints) Performing minimization step: 4981. Total energy = 53.4984 kcal/mol (53.4972 without restraints) Performing minimization step: 4982. Total energy = 53.4883 kcal/mol (53.4871 without restraints) Performing minimization step: 4983. Total energy = 53.4782 kcal/mol (53.4770 without restraints) Performing minimization step: 4984. Total energy = 53.4682 kcal/mol (53.4670 without restraints) Performing minimization step: 4985. Total energy = 53.4581 kcal/mol (53.4569 without restraints) Performing minimization step: 4986. Total energy = 53.4481 kcal/mol (53.4469 without restraints) Performing minimization step: 4987. Total energy = 53.4380 kcal/mol (53.4368 without restraints) Performing minimization step: 4988. Total energy = 53.4280 kcal/mol (53.4268 without restraints) Performing minimization step: 4989. Total energy = 53.4180 kcal/mol (53.4168 without restraints) Performing minimization step: 4990. Total energy = 53.4080 kcal/mol (53.4068 without restraints) Performing minimization step: 4991. Total energy = 53.3979 kcal/mol (53.3968 without restraints) Performing minimization step: 4992. Total energy = 53.3879 kcal/mol (53.3868 without restraints) Performing minimization step: 4993. Total energy = 53.3780 kcal/mol (53.3768 without restraints) Performing minimization step: 4994. Total energy = 53.3680 kcal/mol (53.3668 without restraints) Performing minimization step: 4995. Total energy = 53.3580 kcal/mol (53.3568 without restraints) Performing minimization step: 4996. Total energy = 53.3480 kcal/mol (53.3468 without restraints) Performing minimization step: 4997. Total energy = 53.3381 kcal/mol (53.3369 without restraints) Performing minimization step: 4998. Total energy = 53.3281 kcal/mol (53.3269 without restraints) Performing minimization step: 4999. Total energy = 53.3182 kcal/mol (53.3170 without restraints) Performing minimization step: 5000. Total energy = 53.3082 kcal/mol (53.3071 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/2c7943e1/tmp/MissingAtomsAdded_rpr_refx/MissingAtomsAdded_rpr_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to MissingAtomsAdded_rpr_refx.pdb DONE!