============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss.pdb ============================================================================= Atom's 3247 H8 residue renamed to RG3 Atom's 3246 H21 residue renamed to RG3 Atom's 3245 H22 residue renamed to RG3 Atom's 3244 H1 residue renamed to RG3 Atom's 3243 HO'2 residue renamed to RG3 Atom's 3242 H2' residue renamed to RG3 Atom's 3241 H1' residue renamed to RG3 Atom's 3240 H3' residue renamed to RG3 Atom's 3239 H4' residue renamed to RG3 Atom's 3238 H5'2 residue renamed to RG3 Atom's 3237 H5'1 residue renamed to RG3 Atom's 3236 N9 residue renamed to RG3 Atom's 3235 C8 residue renamed to RG3 Atom's 3234 N7 residue renamed to RG3 Atom's 3233 O6 residue renamed to RG3 Atom's 3232 C6 residue renamed to RG3 Atom's 3231 C5 residue renamed to RG3 Atom's 3230 C4 residue renamed to RG3 Atom's 3229 N3 residue renamed to RG3 Atom's 3228 N2 residue renamed to RG3 Atom's 3227 C2 residue renamed to RG3 Atom's 3226 N1 residue renamed to RG3 Atom's 3225 O2' residue renamed to RG3 Atom's 3224 C2' residue renamed to RG3 Atom's 3223 C1' residue renamed to RG3 Atom's 3222 O3' residue renamed to RG3 Atom's 3221 C3' residue renamed to RG3 Atom's 3220 O4' residue renamed to RG3 Atom's 3219 C4' residue renamed to RG3 Atom's 3218 C5' residue renamed to RG3 Atom's 3217 O5' residue renamed to RG3 Atom's 3216 OP1 residue renamed to RG3 Atom's 3215 OP2 residue renamed to RG3 Atom's 3214 P residue renamed to RG3 Missing atom added: ATOM 35 H3T RG3 A 101 -20.757 3.321 -67.727 1.00 0.00 H Missing atom added: ATOM 2 OP3 A A 1 -31.290 4.320 -49.748 1.00 43.91 O Number of atoms: 3249 Number of residues: 101 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 3508 Number of angles built: 6277 Number of dihedrals built: 9562 Number of impropers built: 692 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 5266591 Number of van der Waals pairs: 366446 Number of H-bonds built: 49 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 16 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 7670.7211 kcal/mol (7655.2697 without restraints) Performing minimization step: 2. Total energy = 7648.4648 kcal/mol (7633.0800 without restraints) Performing minimization step: 3. Total energy = 7626.7413 kcal/mol (7611.4177 without restraints) Performing minimization step: 4. Total energy = 7605.5056 kcal/mol (7590.2381 without restraints) Performing minimization step: 5. Total energy = 7584.7171 kcal/mol (7569.5011 without restraints) Performing minimization step: 6. Total energy = 7564.3390 kcal/mol (7549.1704 without restraints) Performing minimization step: 7. Total energy = 7544.3384 kcal/mol (7529.2136 without restraints) Performing minimization step: 8. Total energy = 7524.6854 kcal/mol (7509.6010 without restraints) Performing minimization step: 9. Total energy = 7505.3541 kcal/mol (7490.3074 without restraints) Performing minimization step: 10. Total energy = 7486.3208 kcal/mol (7471.3091 without restraints) Performing minimization step: 11. Total energy = 7467.5635 kcal/mol (7452.5842 without restraints) Performing minimization step: 12. Total energy = 7449.0634 kcal/mol (7434.1144 without restraints) Performing minimization step: 13. Total energy = 7430.8026 kcal/mol (7415.8822 without restraints) Performing minimization step: 14. Total energy = 7412.7656 kcal/mol (7397.8719 without restraints) Performing minimization step: 15. Total energy = 7394.9395 kcal/mol (7380.0709 without restraints) Performing minimization step: 16. Total energy = 7377.3099 kcal/mol (7362.4651 without restraints) Performing minimization step: 17. Total energy = 7359.8663 kcal/mol (7345.0440 without restraints) Performing minimization step: 18. Total energy = 7342.5982 kcal/mol (7327.7973 without restraints) Performing minimization step: 19. Total energy = 7325.4958 kcal/mol (7310.7150 without restraints) Performing minimization step: 20. Total energy = 7308.5509 kcal/mol (7293.7894 without restraints) Performing minimization step: 21. Total energy = 7291.7560 kcal/mol (7277.0132 without restraints) Performing minimization step: 22. Total energy = 7275.1040 kcal/mol (7260.3788 without restraints) Performing minimization step: 23. Total energy = 7258.5883 kcal/mol (7243.8800 without restraints) Performing minimization step: 24. Total energy = 7242.2024 kcal/mol (7227.5102 without restraints) Performing minimization step: 25. Total energy = 7225.9416 kcal/mol (7211.2653 without restraints) Performing minimization step: 26. Total energy = 7209.8019 kcal/mol (7195.1409 without restraints) Performing minimization step: 27. Total energy = 7193.7776 kcal/mol (7179.1311 without restraints) Performing minimization step: 28. Total energy = 7177.8647 kcal/mol (7163.2324 without restraints) Performing minimization step: 29. Total energy = 7162.0589 kcal/mol (7147.4405 without restraints) Performing minimization step: 30. Total energy = 7146.3579 kcal/mol (7131.7529 without restraints) Performing minimization step: 31. Total energy = 7130.7583 kcal/mol (7116.1663 without restraints) Performing minimization step: 32. Total energy = 7115.2575 kcal/mol (7100.6782 without restraints) Performing minimization step: 33. Total energy = 7099.8515 kcal/mol (7085.2845 without restraints) Performing minimization step: 34. Total energy = 7084.5385 kcal/mol (7069.9838 without restraints) Performing minimization step: 35. Total energy = 7069.3165 kcal/mol (7054.7736 without restraints) Performing minimization step: 36. Total energy = 7054.1826 kcal/mol (7039.6513 without restraints) Performing minimization step: 37. Total energy = 7039.1352 kcal/mol (7024.6153 without restraints) Performing minimization step: 38. Total energy = 7024.1723 kcal/mol (7009.6635 without restraints) Performing minimization step: 39. Total energy = 7009.2923 kcal/mol (6994.7946 without restraints) Performing minimization step: 40. Total energy = 6994.4936 kcal/mol (6980.0067 without restraints) Performing minimization step: 41. Total energy = 6979.7743 kcal/mol (6965.2980 without restraints) Performing minimization step: 42. Total energy = 6965.1333 kcal/mol (6950.6674 without restraints) Performing minimization step: 43. Total energy = 6950.5696 kcal/mol (6936.1142 without restraints) Performing minimization step: 44. Total energy = 6936.0816 kcal/mol (6921.6364 without restraints) Performing minimization step: 45. Total energy = 6921.6681 kcal/mol (6907.2328 without restraints) Performing minimization step: 46. Total energy = 6907.3277 kcal/mol (6892.9025 without restraints) Performing minimization step: 47. Total energy = 6893.0601 kcal/mol (6878.6447 without restraints) Performing minimization step: 48. Total energy = 6878.8637 kcal/mol (6864.4580 without restraints) Performing minimization step: 49. Total energy = 6864.7375 kcal/mol (6850.3414 without restraints) Performing minimization step: 50. Total energy = 6850.6812 kcal/mol (6836.2948 without restraints) Performing minimization step: 51. Total energy = 6836.6936 kcal/mol (6822.3165 without restraints) Performing minimization step: 52. Total energy = 6822.7738 kcal/mol (6808.4060 without restraints) Performing minimization step: 53. Total energy = 6808.9213 kcal/mol (6794.5626 without restraints) Performing minimization step: 54. Total energy = 6795.1349 kcal/mol (6780.7854 without restraints) Performing minimization step: 55. Total energy = 6781.4151 kcal/mol (6767.0748 without restraints) Performing minimization step: 56. Total energy = 6767.7602 kcal/mol (6753.4291 without restraints) Performing minimization step: 57. Total energy = 6754.1697 kcal/mol (6739.8474 without restraints) Performing minimization step: 58. Total energy = 6740.6434 kcal/mol (6726.3300 without restraints) Performing minimization step: 59. Total energy = 6727.1811 kcal/mol (6712.8766 without restraints) Performing minimization step: 60. Total energy = 6713.7820 kcal/mol (6699.4863 without restraints) Performing minimization step: 61. Total energy = 6700.4452 kcal/mol (6686.1582 without restraints) Performing minimization step: 62. Total energy = 6687.1704 kcal/mol (6672.8920 without restraints) Performing minimization step: 63. Total energy = 6673.9572 kcal/mol (6659.6875 without restraints) Performing minimization step: 64. Total energy = 6660.8050 kcal/mol (6646.5438 without restraints) Performing minimization step: 65. Total energy = 6647.7131 kcal/mol (6633.4604 without restraints) Performing minimization step: 66. Total energy = 6634.6821 kcal/mol (6620.4378 without restraints) Performing minimization step: 67. Total energy = 6621.7107 kcal/mol (6607.4750 without restraints) Performing minimization step: 68. Total energy = 6608.7989 kcal/mol (6594.5715 without restraints) Performing minimization step: 69. Total energy = 6595.9455 kcal/mol (6581.7266 without restraints) Performing minimization step: 70. Total energy = 6583.1512 kcal/mol (6568.9405 without restraints) Performing minimization step: 71. Total energy = 6570.4155 kcal/mol (6556.2131 without restraints) Performing minimization step: 72. Total energy = 6557.7376 kcal/mol (6543.5435 without restraints) Performing minimization step: 73. Total energy = 6545.1175 kcal/mol (6530.9316 without restraints) Performing minimization step: 74. Total energy = 6532.5551 kcal/mol (6518.3773 without restraints) Performing minimization step: 75. Total energy = 6520.0500 kcal/mol (6505.8804 without restraints) Performing minimization step: 76. Total energy = 6507.6014 kcal/mol (6493.4399 without restraints) Performing minimization step: 77. Total energy = 6495.2090 kcal/mol (6481.0556 without restraints) Performing minimization step: 78. Total energy = 6482.8736 kcal/mol (6468.7282 without restraints) Performing minimization step: 79. Total energy = 6470.5938 kcal/mol (6456.4564 without restraints) Performing minimization step: 80. Total energy = 6458.3699 kcal/mol (6444.2406 without restraints) Performing minimization step: 81. Total energy = 6446.2011 kcal/mol (6432.0796 without restraints) Performing minimization step: 82. Total energy = 6434.0874 kcal/mol (6419.9739 without restraints) Performing minimization step: 83. Total energy = 6422.0285 kcal/mol (6407.9229 without restraints) Performing minimization step: 84. Total energy = 6410.0250 kcal/mol (6395.9273 without restraints) Performing minimization step: 85. Total energy = 6398.0758 kcal/mol (6383.9860 without restraints) Performing minimization step: 86. Total energy = 6386.1804 kcal/mol (6372.0982 without restraints) Performing minimization step: 87. Total energy = 6374.3390 kcal/mol (6360.2647 without restraints) Performing minimization step: 88. Total energy = 6362.5517 kcal/mol (6348.4852 without restraints) Performing minimization step: 89. Total energy = 6350.8175 kcal/mol (6336.7588 without restraints) Performing minimization step: 90. Total energy = 6339.1370 kcal/mol (6325.0860 without restraints) Performing minimization step: 91. Total energy = 6327.5096 kcal/mol (6313.4662 without restraints) Performing minimization step: 92. Total energy = 6315.9347 kcal/mol (6301.8991 without restraints) Performing minimization step: 93. Total energy = 6304.4130 kcal/mol (6290.3850 without restraints) Performing minimization step: 94. Total energy = 6292.9434 kcal/mol (6278.9232 without restraints) Performing minimization step: 95. Total energy = 6281.5257 kcal/mol (6267.5130 without restraints) Performing minimization step: 96. Total energy = 6270.1603 kcal/mol (6256.1552 without restraints) Performing minimization step: 97. Total energy = 6258.8469 kcal/mol (6244.8493 without restraints) Performing minimization step: 98. Total energy = 6247.5851 kcal/mol (6233.5951 without restraints) Performing minimization step: 99. Total energy = 6236.3745 kcal/mol (6222.3920 without restraints) Performing minimization step: 100. Total energy = 6225.2151 kcal/mol (6211.2401 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 101. Total energy = 6214.1070 kcal/mol (6200.1395 without restraints) Performing minimization step: 102. Total energy = 6203.0497 kcal/mol (6189.0896 without restraints) Performing minimization step: 103. Total energy = 6192.0427 kcal/mol (6178.0901 without restraints) Performing minimization step: 104. Total energy = 6181.0863 kcal/mol (6167.1413 without restraints) Performing minimization step: 105. Total energy = 6170.1808 kcal/mol (6156.2431 without restraints) Performing minimization step: 106. Total energy = 6159.3246 kcal/mol (6145.3943 without restraints) Performing minimization step: 107. Total energy = 6148.5186 kcal/mol (6134.5956 without restraints) Performing minimization step: 108. Total energy = 6137.7624 kcal/mol (6123.8468 without restraints) Performing minimization step: 109. Total energy = 6127.0553 kcal/mol (6113.1470 without restraints) Performing minimization step: 110. Total energy = 6116.3977 kcal/mol (6102.4967 without restraints) Performing minimization step: 111. Total energy = 6105.7896 kcal/mol (6091.8959 without restraints) Performing minimization step: 112. Total energy = 6095.2297 kcal/mol (6081.3433 without restraints) Performing minimization step: 113. Total energy = 6084.7191 kcal/mol (6070.8399 without restraints) Performing minimization step: 114. Total energy = 6074.2573 kcal/mol (6060.3853 without restraints) Performing minimization step: 115. Total energy = 6063.8438 kcal/mol (6049.9790 without restraints) Performing minimization step: 116. Total energy = 6053.4780 kcal/mol (6039.6205 without restraints) Performing minimization step: 117. Total energy = 6043.1612 kcal/mol (6029.3108 without restraints) Performing minimization step: 118. Total energy = 6032.8918 kcal/mol (6019.0486 without restraints) Performing minimization step: 119. Total energy = 6022.6703 kcal/mol (6008.8343 without restraints) Performing minimization step: 120. Total energy = 6012.4965 kcal/mol (5998.6676 without restraints) Performing minimization step: 121. Total energy = 6002.3702 kcal/mol (5988.5485 without restraints) Performing minimization step: 122. Total energy = 5992.2911 kcal/mol (5978.4764 without restraints) Performing minimization step: 123. Total energy = 5982.2586 kcal/mol (5968.4509 without restraints) Performing minimization step: 124. Total energy = 5972.2735 kcal/mol (5958.4729 without restraints) Performing minimization step: 125. Total energy = 5962.3350 kcal/mol (5948.5414 without restraints) Performing minimization step: 126. Total energy = 5952.4424 kcal/mol (5938.6557 without restraints) Performing minimization step: 127. Total energy = 5942.5969 kcal/mol (5928.8174 without restraints) Performing minimization step: 128. Total energy = 5932.7976 kcal/mol (5919.0250 without restraints) Performing minimization step: 129. Total energy = 5923.0441 kcal/mol (5909.2784 without restraints) Performing minimization step: 130. Total energy = 5913.3362 kcal/mol (5899.5776 without restraints) Performing minimization step: 131. Total energy = 5903.6744 kcal/mol (5889.9226 without restraints) Performing minimization step: 132. Total energy = 5894.0578 kcal/mol (5880.3129 without restraints) Performing minimization step: 133. Total energy = 5884.4881 kcal/mol (5870.7502 without restraints) Performing minimization step: 134. Total energy = 5874.9622 kcal/mol (5861.2311 without restraints) Performing minimization step: 135. Total energy = 5865.4814 kcal/mol (5851.7572 without restraints) Performing minimization step: 136. Total energy = 5856.0451 kcal/mol (5842.3277 without restraints) Performing minimization step: 137. Total energy = 5846.6542 kcal/mol (5832.9436 without restraints) Performing minimization step: 138. Total energy = 5837.3074 kcal/mol (5823.6036 without restraints) Performing minimization step: 139. Total energy = 5828.0050 kcal/mol (5814.3080 without restraints) Performing minimization step: 140. Total energy = 5818.7467 kcal/mol (5805.0565 without restraints) Performing minimization step: 141. Total energy = 5809.5324 kcal/mol (5795.8489 without restraints) Performing minimization step: 142. Total energy = 5800.3625 kcal/mol (5786.6858 without restraints) Performing minimization step: 143. Total energy = 5791.2357 kcal/mol (5777.5656 without restraints) Performing minimization step: 144. Total energy = 5782.1527 kcal/mol (5768.4894 without restraints) Performing minimization step: 145. Total energy = 5773.1128 kcal/mol (5759.4561 without restraints) Performing minimization step: 146. Total energy = 5764.1160 kcal/mol (5750.4661 without restraints) Performing minimization step: 147. Total energy = 5755.1625 kcal/mol (5741.5193 without restraints) Performing minimization step: 148. Total energy = 5746.2520 kcal/mol (5732.6154 without restraints) Performing minimization step: 149. Total energy = 5737.3837 kcal/mol (5723.7536 without restraints) Performing minimization step: 150. Total energy = 5728.5581 kcal/mol (5714.9346 without restraints) Performing minimization step: 151. Total energy = 5719.7750 kcal/mol (5706.1581 without restraints) Performing minimization step: 152. Total energy = 5711.0339 kcal/mol (5697.4236 without restraints) Performing minimization step: 153. Total energy = 5702.3343 kcal/mol (5688.7304 without restraints) Performing minimization step: 154. Total energy = 5693.6772 kcal/mol (5680.0799 without restraints) Performing minimization step: 155. Total energy = 5685.0618 kcal/mol (5671.4710 without restraints) Performing minimization step: 156. Total energy = 5676.4874 kcal/mol (5662.9032 without restraints) Performing minimization step: 157. Total energy = 5667.9544 kcal/mol (5654.3766 without restraints) Performing minimization step: 158. Total energy = 5659.4629 kcal/mol (5645.8916 without restraints) Performing minimization step: 159. Total energy = 5651.0117 kcal/mol (5637.4469 without restraints) Performing minimization step: 160. Total energy = 5642.6015 kcal/mol (5629.0430 without restraints) Performing minimization step: 161. Total energy = 5634.2321 kcal/mol (5620.6800 without restraints) Performing minimization step: 162. Total energy = 5625.9031 kcal/mol (5612.3575 without restraints) Performing minimization step: 163. Total energy = 5617.6146 kcal/mol (5604.0754 without restraints) Performing minimization step: 164. Total energy = 5609.3662 kcal/mol (5595.8333 without restraints) Performing minimization step: 165. Total energy = 5601.1579 kcal/mol (5587.6313 without restraints) Performing minimization step: 166. Total energy = 5592.9895 kcal/mol (5579.4693 without restraints) Performing minimization step: 167. Total energy = 5584.8607 kcal/mol (5571.3468 without restraints) Performing minimization step: 168. Total energy = 5576.7713 kcal/mol (5563.2636 without restraints) Performing minimization step: 169. Total energy = 5568.7203 kcal/mol (5555.2188 without restraints) Performing minimization step: 170. Total energy = 5560.7092 kcal/mol (5547.2141 without restraints) Performing minimization step: 171. Total energy = 5552.7372 kcal/mol (5539.2483 without restraints) Performing minimization step: 172. Total energy = 5544.8041 kcal/mol (5531.3214 without restraints) Performing minimization step: 173. Total energy = 5536.9100 kcal/mol (5523.4335 without restraints) Performing minimization step: 174. Total energy = 5529.0541 kcal/mol (5515.5838 without restraints) Performing minimization step: 175. Total energy = 5521.2361 kcal/mol (5507.7720 without restraints) Performing minimization step: 176. Total energy = 5513.4562 kcal/mol (5499.9982 without restraints) Performing minimization step: 177. Total energy = 5505.7145 kcal/mol (5492.2627 without restraints) Performing minimization step: 178. Total energy = 5498.0107 kcal/mol (5484.5650 without restraints) Performing minimization step: 179. Total energy = 5490.3443 kcal/mol (5476.9045 without restraints) Performing minimization step: 180. Total energy = 5482.7154 kcal/mol (5469.2819 without restraints) Performing minimization step: 181. Total energy = 5475.1237 kcal/mol (5461.6962 without restraints) Performing minimization step: 182. Total energy = 5467.5693 kcal/mol (5454.1479 without restraints) Performing minimization step: 183. Total energy = 5460.0518 kcal/mol (5446.6364 without restraints) Performing minimization step: 184. Total energy = 5452.5713 kcal/mol (5439.1619 without restraints) Performing minimization step: 185. Total energy = 5445.1271 kcal/mol (5431.7237 without restraints) Performing minimization step: 186. Total energy = 5437.7192 kcal/mol (5424.3218 without restraints) Performing minimization step: 187. Total energy = 5430.3480 kcal/mol (5416.9567 without restraints) Performing minimization step: 188. Total energy = 5423.0129 kcal/mol (5409.6274 without restraints) Performing minimization step: 189. Total energy = 5415.7135 kcal/mol (5402.3338 without restraints) Performing minimization step: 190. Total energy = 5408.4501 kcal/mol (5395.0766 without restraints) Performing minimization step: 191. Total energy = 5401.2223 kcal/mol (5387.8544 without restraints) Performing minimization step: 192. Total energy = 5394.0297 kcal/mol (5380.6678 without restraints) Performing minimization step: 193. Total energy = 5386.8718 kcal/mol (5373.5158 without restraints) Performing minimization step: 194. Total energy = 5379.7496 kcal/mol (5366.3993 without restraints) Performing minimization step: 195. Total energy = 5372.6621 kcal/mol (5359.3177 without restraints) Performing minimization step: 196. Total energy = 5365.6102 kcal/mol (5352.2716 without restraints) Performing minimization step: 197. Total energy = 5358.5922 kcal/mol (5345.2593 without restraints) Performing minimization step: 198. Total energy = 5351.6087 kcal/mol (5338.2817 without restraints) Performing minimization step: 199. Total energy = 5344.6597 kcal/mol (5331.3385 without restraints) Performing minimization step: 200. Total energy = 5337.7445 kcal/mol (5324.4290 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 201. Total energy = 5330.8639 kcal/mol (5317.5541 without restraints) Performing minimization step: 202. Total energy = 5324.0165 kcal/mol (5310.7125 without restraints) Performing minimization step: 203. Total energy = 5317.2023 kcal/mol (5303.9039 without restraints) Performing minimization step: 204. Total energy = 5310.4220 kcal/mol (5297.1293 without restraints) Performing minimization step: 205. Total energy = 5303.6746 kcal/mol (5290.3877 without restraints) Performing minimization step: 206. Total energy = 5296.9610 kcal/mol (5283.6796 without restraints) Performing minimization step: 207. Total energy = 5290.2800 kcal/mol (5277.0041 without restraints) Performing minimization step: 208. Total energy = 5283.6319 kcal/mol (5270.3617 without restraints) Performing minimization step: 209. Total energy = 5277.0160 kcal/mol (5263.7514 without restraints) Performing minimization step: 210. Total energy = 5270.4328 kcal/mol (5257.1738 without restraints) Performing minimization step: 211. Total energy = 5263.8818 kcal/mol (5250.6283 without restraints) Performing minimization step: 212. Total energy = 5257.3626 kcal/mol (5244.1144 without restraints) Performing minimization step: 213. Total energy = 5250.8754 kcal/mol (5237.6330 without restraints) Performing minimization step: 214. Total energy = 5244.4205 kcal/mol (5231.1837 without restraints) Performing minimization step: 215. Total energy = 5237.9970 kcal/mol (5224.7656 without restraints) Performing minimization step: 216. Total energy = 5231.6046 kcal/mol (5218.3787 without restraints) Performing minimization step: 217. Total energy = 5225.2440 kcal/mol (5212.0236 without restraints) Performing minimization step: 218. Total energy = 5218.9143 kcal/mol (5205.6994 without restraints) Performing minimization step: 219. Total energy = 5212.6158 kcal/mol (5199.4063 without restraints) Performing minimization step: 220. Total energy = 5206.3478 kcal/mol (5193.1438 without restraints) Performing minimization step: 221. Total energy = 5200.1106 kcal/mol (5186.9118 without restraints) Performing minimization step: 222. Total energy = 5193.9041 kcal/mol (5180.7107 without restraints) Performing minimization step: 223. Total energy = 5187.7272 kcal/mol (5174.5392 without restraints) Performing minimization step: 224. Total energy = 5181.5805 kcal/mol (5168.3978 without restraints) Performing minimization step: 225. Total energy = 5175.4635 kcal/mol (5162.2863 without restraints) Performing minimization step: 226. Total energy = 5169.3767 kcal/mol (5156.2045 without restraints) Performing minimization step: 227. Total energy = 5163.3196 kcal/mol (5150.1530 without restraints) Performing minimization step: 228. Total energy = 5157.2921 kcal/mol (5144.1306 without restraints) Performing minimization step: 229. Total energy = 5151.2936 kcal/mol (5138.1373 without restraints) Performing minimization step: 230. Total energy = 5145.3247 kcal/mol (5132.1737 without restraints) Performing minimization step: 231. Total energy = 5139.3849 kcal/mol (5126.2391 without restraints) Performing minimization step: 232. Total energy = 5133.4734 kcal/mol (5120.3329 without restraints) Performing minimization step: 233. Total energy = 5127.5907 kcal/mol (5114.4552 without restraints) Performing minimization step: 234. Total energy = 5121.7365 kcal/mol (5108.6063 without restraints) Performing minimization step: 235. Total energy = 5115.9106 kcal/mol (5102.7855 without restraints) Performing minimization step: 236. Total energy = 5110.1141 kcal/mol (5096.9942 without restraints) Performing minimization step: 237. Total energy = 5104.3446 kcal/mol (5091.2299 without restraints) Performing minimization step: 238. Total energy = 5098.6027 kcal/mol (5085.4931 without restraints) Performing minimization step: 239. Total energy = 5092.8888 kcal/mol (5079.7844 without restraints) Performing minimization step: 240. Total energy = 5087.2024 kcal/mol (5074.1030 without restraints) Performing minimization step: 241. Total energy = 5081.5433 kcal/mol (5068.4489 without restraints) Performing minimization step: 242. Total energy = 5075.9116 kcal/mol (5062.8223 without restraints) Performing minimization step: 243. Total energy = 5070.3068 kcal/mol (5057.2226 without restraints) Performing minimization step: 244. Total energy = 5064.7294 kcal/mol (5051.6501 without restraints) Performing minimization step: 245. Total energy = 5059.1783 kcal/mol (5046.1041 without restraints) Performing minimization step: 246. Total energy = 5053.6541 kcal/mol (5040.5849 without restraints) Performing minimization step: 247. Total energy = 5048.1564 kcal/mol (5035.0922 without restraints) Performing minimization step: 248. Total energy = 5042.6849 kcal/mol (5029.6256 without restraints) Performing minimization step: 249. Total energy = 5037.2394 kcal/mol (5024.1851 without restraints) Performing minimization step: 250. Total energy = 5031.8201 kcal/mol (5018.7709 without restraints) Performing minimization step: 251. Total energy = 5026.4266 kcal/mol (5013.3821 without restraints) Performing minimization step: 252. Total energy = 5021.0585 kcal/mol (5008.0188 without restraints) Performing minimization step: 253. Total energy = 5015.7161 kcal/mol (5002.6813 without restraints) Performing minimization step: 254. Total energy = 5010.3990 kcal/mol (4997.3692 without restraints) Performing minimization step: 255. Total energy = 5005.1072 kcal/mol (4992.0823 without restraints) Performing minimization step: 256. Total energy = 4999.8406 kcal/mol (4986.8205 without restraints) Performing minimization step: 257. Total energy = 4994.5983 kcal/mol (4981.5830 without restraints) Performing minimization step: 258. Total energy = 4989.3812 kcal/mol (4976.3706 without restraints) Performing minimization step: 259. Total energy = 4984.1887 kcal/mol (4971.1830 without restraints) Performing minimization step: 260. Total energy = 4979.0210 kcal/mol (4966.0201 without restraints) Performing minimization step: 261. Total energy = 4973.8776 kcal/mol (4960.8815 without restraints) Performing minimization step: 262. Total energy = 4968.7586 kcal/mol (4955.7672 without restraints) Performing minimization step: 263. Total energy = 4963.6633 kcal/mol (4950.6766 without restraints) Performing minimization step: 264. Total energy = 4958.5917 kcal/mol (4945.6098 without restraints) Performing minimization step: 265. Total energy = 4953.5438 kcal/mol (4940.5666 without restraints) Performing minimization step: 266. Total energy = 4948.5197 kcal/mol (4935.5471 without restraints) Performing minimization step: 267. Total energy = 4943.5188 kcal/mol (4930.5509 without restraints) Performing minimization step: 268. Total energy = 4938.5414 kcal/mol (4925.5784 without restraints) Performing minimization step: 269. Total energy = 4933.5870 kcal/mol (4920.6284 without restraints) Performing minimization step: 270. Total energy = 4928.6553 kcal/mol (4915.7016 without restraints) Performing minimization step: 271. Total energy = 4923.7467 kcal/mol (4910.7974 without restraints) Performing minimization step: 272. Total energy = 4918.8612 kcal/mol (4905.9165 without restraints) Performing minimization step: 273. Total energy = 4913.9983 kcal/mol (4901.0582 without restraints) Performing minimization step: 274. Total energy = 4909.1578 kcal/mol (4896.2224 without restraints) Performing minimization step: 275. Total energy = 4904.3391 kcal/mol (4891.4080 without restraints) Performing minimization step: 276. Total energy = 4899.5428 kcal/mol (4886.6164 without restraints) Performing minimization step: 277. Total energy = 4894.7687 kcal/mol (4881.8469 without restraints) Performing minimization step: 278. Total energy = 4890.0159 kcal/mol (4877.0986 without restraints) Performing minimization step: 279. Total energy = 4885.2853 kcal/mol (4872.3725 without restraints) Performing minimization step: 280. Total energy = 4880.5766 kcal/mol (4867.6684 without restraints) Performing minimization step: 281. Total energy = 4875.8890 kcal/mol (4862.9852 without restraints) Performing minimization step: 282. Total energy = 4871.2222 kcal/mol (4858.3229 without restraints) Performing minimization step: 283. Total energy = 4866.5772 kcal/mol (4853.6823 without restraints) Performing minimization step: 284. Total energy = 4861.9536 kcal/mol (4849.0632 without restraints) Performing minimization step: 285. Total energy = 4857.3501 kcal/mol (4844.4641 without restraints) Performing minimization step: 286. Total energy = 4852.7681 kcal/mol (4839.8866 without restraints) Performing minimization step: 287. Total energy = 4848.2059 kcal/mol (4835.3288 without restraints) Performing minimization step: 288. Total energy = 4843.6648 kcal/mol (4830.7921 without restraints) Performing minimization step: 289. Total energy = 4839.1440 kcal/mol (4826.2757 without restraints) Performing minimization step: 290. Total energy = 4834.6431 kcal/mol (4821.7791 without restraints) Performing minimization step: 291. Total energy = 4830.1625 kcal/mol (4817.3029 without restraints) Performing minimization step: 292. Total energy = 4825.7023 kcal/mol (4812.8472 without restraints) Performing minimization step: 293. Total energy = 4821.2616 kcal/mol (4808.4106 without restraints) Performing minimization step: 294. Total energy = 4816.8402 kcal/mol (4803.9935 without restraints) Performing minimization step: 295. Total energy = 4812.4384 kcal/mol (4799.5961 without restraints) Performing minimization step: 296. Total energy = 4808.0566 kcal/mol (4795.2185 without restraints) Performing minimization step: 297. Total energy = 4803.6941 kcal/mol (4790.8603 without restraints) Performing minimization step: 298. Total energy = 4799.3508 kcal/mol (4786.5213 without restraints) Performing minimization step: 299. Total energy = 4795.0264 kcal/mol (4782.2012 without restraints) Performing minimization step: 300. Total energy = 4790.7210 kcal/mol (4777.9001 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 301. Total energy = 4786.4342 kcal/mol (4773.6174 without restraints) Performing minimization step: 302. Total energy = 4782.1665 kcal/mol (4769.3540 without restraints) Performing minimization step: 303. Total energy = 4777.9171 kcal/mol (4765.1088 without restraints) Performing minimization step: 304. Total energy = 4773.6863 kcal/mol (4760.8823 without restraints) Performing minimization step: 305. Total energy = 4769.4743 kcal/mol (4756.6745 without restraints) Performing minimization step: 306. Total energy = 4765.2804 kcal/mol (4752.4847 without restraints) Performing minimization step: 307. Total energy = 4761.1040 kcal/mol (4748.3125 without restraints) Performing minimization step: 308. Total energy = 4756.9461 kcal/mol (4744.1588 without restraints) Performing minimization step: 309. Total energy = 4752.8063 kcal/mol (4740.0233 without restraints) Performing minimization step: 310. Total energy = 4748.6841 kcal/mol (4735.9050 without restraints) Performing minimization step: 311. Total energy = 4744.5792 kcal/mol (4731.8043 without restraints) Performing minimization step: 312. Total energy = 4740.4916 kcal/mol (4727.7207 without restraints) Performing minimization step: 313. Total energy = 4736.4215 kcal/mol (4723.6547 without restraints) Performing minimization step: 314. Total energy = 4732.3686 kcal/mol (4719.6060 without restraints) Performing minimization step: 315. Total energy = 4728.3331 kcal/mol (4715.5746 without restraints) Performing minimization step: 316. Total energy = 4724.3151 kcal/mol (4711.5606 without restraints) Performing minimization step: 317. Total energy = 4720.3137 kcal/mol (4707.5633 without restraints) Performing minimization step: 318. Total energy = 4716.3292 kcal/mol (4703.5828 without restraints) Performing minimization step: 319. Total energy = 4712.3614 kcal/mol (4699.6192 without restraints) Performing minimization step: 320. Total energy = 4708.4107 kcal/mol (4695.6723 without restraints) Performing minimization step: 321. Total energy = 4704.4759 kcal/mol (4691.7415 without restraints) Performing minimization step: 322. Total energy = 4700.5575 kcal/mol (4687.8273 without restraints) Performing minimization step: 323. Total energy = 4696.6557 kcal/mol (4683.9296 without restraints) Performing minimization step: 324. Total energy = 4692.7704 kcal/mol (4680.0482 without restraints) Performing minimization step: 325. Total energy = 4688.9011 kcal/mol (4676.1829 without restraints) Performing minimization step: 326. Total energy = 4685.0475 kcal/mol (4672.3333 without restraints) Performing minimization step: 327. Total energy = 4681.2095 kcal/mol (4668.4992 without restraints) Performing minimization step: 328. Total energy = 4677.3877 kcal/mol (4664.6814 without restraints) Performing minimization step: 329. Total energy = 4673.5815 kcal/mol (4660.8791 without restraints) Performing minimization step: 330. Total energy = 4669.7911 kcal/mol (4657.0928 without restraints) Performing minimization step: 331. Total energy = 4666.0163 kcal/mol (4653.3219 without restraints) Performing minimization step: 332. Total energy = 4662.2568 kcal/mol (4649.5663 without restraints) Performing minimization step: 333. Total energy = 4658.5122 kcal/mol (4645.8255 without restraints) Performing minimization step: 334. Total energy = 4654.7834 kcal/mol (4642.1007 without restraints) Performing minimization step: 335. Total energy = 4651.0695 kcal/mol (4638.3907 without restraints) Performing minimization step: 336. Total energy = 4647.3705 kcal/mol (4634.6956 without restraints) Performing minimization step: 337. Total energy = 4643.6864 kcal/mol (4631.0154 without restraints) Performing minimization step: 338. Total energy = 4640.0176 kcal/mol (4627.3504 without restraints) Performing minimization step: 339. Total energy = 4636.3633 kcal/mol (4623.7000 without restraints) Performing minimization step: 340. Total energy = 4632.7241 kcal/mol (4620.0648 without restraints) Performing minimization step: 341. Total energy = 4629.0991 kcal/mol (4616.4434 without restraints) Performing minimization step: 342. Total energy = 4625.4888 kcal/mol (4612.8371 without restraints) Performing minimization step: 343. Total energy = 4621.8925 kcal/mol (4609.2445 without restraints) Performing minimization step: 344. Total energy = 4618.3105 kcal/mol (4605.6665 without restraints) Performing minimization step: 345. Total energy = 4614.7429 kcal/mol (4602.1026 without restraints) Performing minimization step: 346. Total energy = 4611.1895 kcal/mol (4598.5531 without restraints) Performing minimization step: 347. Total energy = 4607.6506 kcal/mol (4595.0181 without restraints) Performing minimization step: 348. Total energy = 4604.1250 kcal/mol (4591.4961 without restraints) Performing minimization step: 349. Total energy = 4600.6137 kcal/mol (4587.9887 without restraints) Performing minimization step: 350. Total energy = 4597.1160 kcal/mol (4584.4948 without restraints) Performing minimization step: 351. Total energy = 4593.6320 kcal/mol (4581.0146 without restraints) Performing minimization step: 352. Total energy = 4590.1616 kcal/mol (4577.5480 without restraints) Performing minimization step: 353. Total energy = 4586.7050 kcal/mol (4574.0951 without restraints) Performing minimization step: 354. Total energy = 4583.2619 kcal/mol (4570.6557 without restraints) Performing minimization step: 355. Total energy = 4579.8321 kcal/mol (4567.2297 without restraints) Performing minimization step: 356. Total energy = 4576.4155 kcal/mol (4563.8169 without restraints) Performing minimization step: 357. Total energy = 4573.0121 kcal/mol (4560.4173 without restraints) Performing minimization step: 358. Total energy = 4569.6220 kcal/mol (4557.0308 without restraints) Performing minimization step: 359. Total energy = 4566.2451 kcal/mol (4553.6577 without restraints) Performing minimization step: 360. Total energy = 4562.8815 kcal/mol (4550.2979 without restraints) Performing minimization step: 361. Total energy = 4559.5302 kcal/mol (4546.9503 without restraints) Performing minimization step: 362. Total energy = 4556.1921 kcal/mol (4543.6159 without restraints) Performing minimization step: 363. Total energy = 4552.8668 kcal/mol (4540.2943 without restraints) Performing minimization step: 364. Total energy = 4549.5542 kcal/mol (4536.9854 without restraints) Performing minimization step: 365. Total energy = 4546.2541 kcal/mol (4533.6890 without restraints) Performing minimization step: 366. Total energy = 4542.9667 kcal/mol (4530.4053 without restraints) Performing minimization step: 367. Total energy = 4539.6920 kcal/mol (4527.1342 without restraints) Performing minimization step: 368. Total energy = 4536.4294 kcal/mol (4523.8753 without restraints) Performing minimization step: 369. Total energy = 4533.1794 kcal/mol (4520.6291 without restraints) Performing minimization step: 370. Total energy = 4529.9420 kcal/mol (4517.3953 without restraints) Performing minimization step: 371. Total energy = 4526.7168 kcal/mol (4514.1738 without restraints) Performing minimization step: 372. Total energy = 4523.5040 kcal/mol (4510.9648 without restraints) Performing minimization step: 373. Total energy = 4520.3033 kcal/mol (4507.7676 without restraints) Performing minimization step: 374. Total energy = 4517.1144 kcal/mol (4504.5823 without restraints) Performing minimization step: 375. Total energy = 4513.9371 kcal/mol (4501.4087 without restraints) Performing minimization step: 376. Total energy = 4510.7722 kcal/mol (4498.2474 without restraints) Performing minimization step: 377. Total energy = 4507.6192 kcal/mol (4495.0981 without restraints) Performing minimization step: 378. Total energy = 4504.4779 kcal/mol (4491.9605 without restraints) Performing minimization step: 379. Total energy = 4501.3487 kcal/mol (4488.8349 without restraints) Performing minimization step: 380. Total energy = 4498.2310 kcal/mol (4485.7208 without restraints) Performing minimization step: 381. Total energy = 4495.1251 kcal/mol (4482.6186 without restraints) Performing minimization step: 382. Total energy = 4492.0306 kcal/mol (4479.5277 without restraints) Performing minimization step: 383. Total energy = 4488.9477 kcal/mol (4476.4484 without restraints) Performing minimization step: 384. Total energy = 4485.8764 kcal/mol (4473.3808 without restraints) Performing minimization step: 385. Total energy = 4482.8167 kcal/mol (4470.3246 without restraints) Performing minimization step: 386. Total energy = 4479.7677 kcal/mol (4467.2793 without restraints) Performing minimization step: 387. Total energy = 4476.7308 kcal/mol (4464.2460 without restraints) Performing minimization step: 388. Total energy = 4473.7047 kcal/mol (4461.2235 without restraints) Performing minimization step: 389. Total energy = 4470.6896 kcal/mol (4458.2120 without restraints) Performing minimization step: 390. Total energy = 4467.6857 kcal/mol (4455.2117 without restraints) Performing minimization step: 391. Total energy = 4464.6931 kcal/mol (4452.2227 without restraints) Performing minimization step: 392. Total energy = 4461.7112 kcal/mol (4449.2443 without restraints) Performing minimization step: 393. Total energy = 4458.7408 kcal/mol (4446.2777 without restraints) Performing minimization step: 394. Total energy = 4455.7810 kcal/mol (4443.3213 without restraints) Performing minimization step: 395. Total energy = 4452.8321 kcal/mol (4440.3761 without restraints) Performing minimization step: 396. Total energy = 4449.8941 kcal/mol (4437.4417 without restraints) Performing minimization step: 397. Total energy = 4446.9669 kcal/mol (4434.5182 without restraints) Performing minimization step: 398. Total energy = 4444.0506 kcal/mol (4431.6053 without restraints) Performing minimization step: 399. Total energy = 4441.1445 kcal/mol (4428.7028 without restraints) Performing minimization step: 400. Total energy = 4438.2493 kcal/mol (4425.8112 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 401. Total energy = 4435.3644 kcal/mol (4422.9299 without restraints) Performing minimization step: 402. Total energy = 4432.4903 kcal/mol (4420.0592 without restraints) Performing minimization step: 403. Total energy = 4429.6266 kcal/mol (4417.1991 without restraints) Performing minimization step: 404. Total energy = 4426.7735 kcal/mol (4414.3495 without restraints) Performing minimization step: 405. Total energy = 4423.9307 kcal/mol (4411.5103 without restraints) Performing minimization step: 406. Total energy = 4421.0982 kcal/mol (4408.6814 without restraints) Performing minimization step: 407. Total energy = 4418.2763 kcal/mol (4405.8631 without restraints) Performing minimization step: 408. Total energy = 4415.4644 kcal/mol (4403.0547 without restraints) Performing minimization step: 409. Total energy = 4412.6626 kcal/mol (4400.2565 without restraints) Performing minimization step: 410. Total energy = 4409.8712 kcal/mol (4397.4688 without restraints) Performing minimization step: 411. Total energy = 4407.0895 kcal/mol (4394.6904 without restraints) Performing minimization step: 412. Total energy = 4404.3182 kcal/mol (4391.9228 without restraints) Performing minimization step: 413. Total energy = 4401.5568 kcal/mol (4389.1648 without restraints) Performing minimization step: 414. Total energy = 4398.8057 kcal/mol (4386.4174 without restraints) Performing minimization step: 415. Total energy = 4396.0641 kcal/mol (4383.6792 without restraints) Performing minimization step: 416. Total energy = 4393.3324 kcal/mol (4380.9511 without restraints) Performing minimization step: 417. Total energy = 4390.6105 kcal/mol (4378.2328 without restraints) Performing minimization step: 418. Total energy = 4387.8990 kcal/mol (4375.5247 without restraints) Performing minimization step: 419. Total energy = 4385.1969 kcal/mol (4372.8263 without restraints) Performing minimization step: 420. Total energy = 4382.5050 kcal/mol (4370.1379 without restraints) Performing minimization step: 421. Total energy = 4379.8227 kcal/mol (4367.4592 without restraints) Performing minimization step: 422. Total energy = 4377.1501 kcal/mol (4364.7901 without restraints) Performing minimization step: 423. Total energy = 4374.4867 kcal/mol (4362.1302 without restraints) Performing minimization step: 424. Total energy = 4371.8331 kcal/mol (4359.4803 without restraints) Performing minimization step: 425. Total energy = 4369.1893 kcal/mol (4356.8399 without restraints) Performing minimization step: 426. Total energy = 4366.5548 kcal/mol (4354.2089 without restraints) Performing minimization step: 427. Total energy = 4363.9296 kcal/mol (4351.5873 without restraints) Performing minimization step: 428. Total energy = 4361.3138 kcal/mol (4348.9751 without restraints) Performing minimization step: 429. Total energy = 4358.7072 kcal/mol (4346.3720 without restraints) Performing minimization step: 430. Total energy = 4356.1101 kcal/mol (4343.7783 without restraints) Performing minimization step: 431. Total energy = 4353.5224 kcal/mol (4341.1942 without restraints) Performing minimization step: 432. Total energy = 4350.9439 kcal/mol (4338.6193 without restraints) Performing minimization step: 433. Total energy = 4348.3748 kcal/mol (4336.0537 without restraints) Performing minimization step: 434. Total energy = 4345.8149 kcal/mol (4333.4972 without restraints) Performing minimization step: 435. Total energy = 4343.2645 kcal/mol (4330.9504 without restraints) Performing minimization step: 436. Total energy = 4340.7228 kcal/mol (4328.4122 without restraints) Performing minimization step: 437. Total energy = 4338.1905 kcal/mol (4325.8834 without restraints) Performing minimization step: 438. Total energy = 4335.6667 kcal/mol (4323.3632 without restraints) Performing minimization step: 439. Total energy = 4333.1513 kcal/mol (4320.8514 without restraints) Performing minimization step: 440. Total energy = 4330.6458 kcal/mol (4318.3493 without restraints) Performing minimization step: 441. Total energy = 4328.1489 kcal/mol (4315.8559 without restraints) Performing minimization step: 442. Total energy = 4325.6612 kcal/mol (4313.3717 without restraints) Performing minimization step: 443. Total energy = 4323.1823 kcal/mol (4310.8962 without restraints) Performing minimization step: 444. Total energy = 4320.7121 kcal/mol (4308.4297 without restraints) Performing minimization step: 445. Total energy = 4318.2509 kcal/mol (4305.9720 without restraints) Performing minimization step: 446. Total energy = 4315.7988 kcal/mol (4303.5234 without restraints) Performing minimization step: 447. Total energy = 4313.3547 kcal/mol (4301.0829 without restraints) Performing minimization step: 448. Total energy = 4310.9204 kcal/mol (4298.6521 without restraints) Performing minimization step: 449. Total energy = 4308.4940 kcal/mol (4296.2292 without restraints) Performing minimization step: 450. Total energy = 4306.0761 kcal/mol (4293.8148 without restraints) Performing minimization step: 451. Total energy = 4303.6669 kcal/mol (4291.4090 without restraints) Performing minimization step: 452. Total energy = 4301.2660 kcal/mol (4289.0118 without restraints) Performing minimization step: 453. Total energy = 4298.8743 kcal/mol (4286.6236 without restraints) Performing minimization step: 454. Total energy = 4296.4905 kcal/mol (4284.2433 without restraints) Performing minimization step: 455. Total energy = 4294.1157 kcal/mol (4281.8721 without restraints) Performing minimization step: 456. Total energy = 4291.7491 kcal/mol (4279.5089 without restraints) Performing minimization step: 457. Total energy = 4289.3907 kcal/mol (4277.1542 without restraints) Performing minimization step: 458. Total energy = 4287.0411 kcal/mol (4274.8082 without restraints) Performing minimization step: 459. Total energy = 4284.7003 kcal/mol (4272.4709 without restraints) Performing minimization step: 460. Total energy = 4282.3676 kcal/mol (4270.1416 without restraints) Performing minimization step: 461. Total energy = 4280.0429 kcal/mol (4267.8204 without restraints) Performing minimization step: 462. Total energy = 4277.7262 kcal/mol (4265.5072 without restraints) Performing minimization step: 463. Total energy = 4275.4177 kcal/mol (4263.2023 without restraints) Performing minimization step: 464. Total energy = 4273.1177 kcal/mol (4260.9058 without restraints) Performing minimization step: 465. Total energy = 4270.8261 kcal/mol (4258.6178 without restraints) Performing minimization step: 466. Total energy = 4268.5422 kcal/mol (4256.3374 without restraints) Performing minimization step: 467. Total energy = 4266.2665 kcal/mol (4254.0653 without restraints) Performing minimization step: 468. Total energy = 4263.9987 kcal/mol (4251.8009 without restraints) Performing minimization step: 469. Total energy = 4261.7392 kcal/mol (4249.5450 without restraints) Performing minimization step: 470. Total energy = 4259.4875 kcal/mol (4247.2968 without restraints) Performing minimization step: 471. Total energy = 4257.2438 kcal/mol (4245.0566 without restraints) Performing minimization step: 472. Total energy = 4255.0081 kcal/mol (4242.8245 without restraints) Performing minimization step: 473. Total energy = 4252.7806 kcal/mol (4240.6006 without restraints) Performing minimization step: 474. Total energy = 4250.5608 kcal/mol (4238.3844 without restraints) Performing minimization step: 475. Total energy = 4248.3487 kcal/mol (4236.1758 without restraints) Performing minimization step: 476. Total energy = 4246.1450 kcal/mol (4233.9756 without restraints) Performing minimization step: 477. Total energy = 4243.9485 kcal/mol (4231.7825 without restraints) Performing minimization step: 478. Total energy = 4241.7593 kcal/mol (4229.5969 without restraints) Performing minimization step: 479. Total energy = 4239.5785 kcal/mol (4227.4196 without restraints) Performing minimization step: 480. Total energy = 4237.4056 kcal/mol (4225.2503 without restraints) Performing minimization step: 481. Total energy = 4235.2397 kcal/mol (4223.0879 without restraints) Performing minimization step: 482. Total energy = 4233.0821 kcal/mol (4220.9338 without restraints) Performing minimization step: 483. Total energy = 4230.9318 kcal/mol (4218.7871 without restraints) Performing minimization step: 484. Total energy = 4228.7889 kcal/mol (4216.6477 without restraints) Performing minimization step: 485. Total energy = 4226.6538 kcal/mol (4214.5161 without restraints) Performing minimization step: 486. Total energy = 4224.5264 kcal/mol (4212.3923 without restraints) Performing minimization step: 487. Total energy = 4222.4063 kcal/mol (4210.2757 without restraints) Performing minimization step: 488. Total energy = 4220.2935 kcal/mol (4208.1665 without restraints) Performing minimization step: 489. Total energy = 4218.1884 kcal/mol (4206.0650 without restraints) Performing minimization step: 490. Total energy = 4216.0912 kcal/mol (4203.9713 without restraints) Performing minimization step: 491. Total energy = 4214.0009 kcal/mol (4201.8845 without restraints) Performing minimization step: 492. Total energy = 4211.9179 kcal/mol (4199.8051 without restraints) Performing minimization step: 493. Total energy = 4209.8418 kcal/mol (4197.7324 without restraints) Performing minimization step: 494. Total energy = 4207.7741 kcal/mol (4195.6686 without restraints) Performing minimization step: 495. Total energy = 4205.7133 kcal/mol (4193.6112 without restraints) Performing minimization step: 496. Total energy = 4203.6600 kcal/mol (4191.5615 without restraints) Performing minimization step: 497. Total energy = 4201.6138 kcal/mol (4189.5188 without restraints) Performing minimization step: 498. Total energy = 4199.5746 kcal/mol (4187.4831 without restraints) Performing minimization step: 499. Total energy = 4197.5422 kcal/mol (4185.4543 without restraints) Performing minimization step: 500. Total energy = 4195.5170 kcal/mol (4183.4327 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 501. Total energy = 4193.4992 kcal/mol (4181.4184 without restraints) Performing minimization step: 502. Total energy = 4191.4886 kcal/mol (4179.4114 without restraints) Performing minimization step: 503. Total energy = 4189.4851 kcal/mol (4177.4115 without restraints) Performing minimization step: 504. Total energy = 4187.4888 kcal/mol (4175.4187 without restraints) Performing minimization step: 505. Total energy = 4185.4991 kcal/mol (4173.4327 without restraints) Performing minimization step: 506. Total energy = 4183.5163 kcal/mol (4171.4534 without restraints) Performing minimization step: 507. Total energy = 4181.5407 kcal/mol (4169.4814 without restraints) Performing minimization step: 508. Total energy = 4179.5722 kcal/mol (4167.5166 without restraints) Performing minimization step: 509. Total energy = 4177.6108 kcal/mol (4165.5586 without restraints) Performing minimization step: 510. Total energy = 4175.6564 kcal/mol (4163.6079 without restraints) Performing minimization step: 511. Total energy = 4173.7086 kcal/mol (4161.6636 without restraints) Performing minimization step: 512. Total energy = 4171.7669 kcal/mol (4159.7254 without restraints) Performing minimization step: 513. Total energy = 4169.8319 kcal/mol (4157.7939 without restraints) Performing minimization step: 514. Total energy = 4167.9042 kcal/mol (4155.8700 without restraints) Performing minimization step: 515. Total energy = 4165.9835 kcal/mol (4153.9527 without restraints) Performing minimization step: 516. Total energy = 4164.0689 kcal/mol (4152.0418 without restraints) Performing minimization step: 517. Total energy = 4162.1610 kcal/mol (4150.1375 without restraints) Performing minimization step: 518. Total energy = 4160.2599 kcal/mol (4148.2400 without restraints) Performing minimization step: 519. Total energy = 4158.3665 kcal/mol (4146.3503 without restraints) Performing minimization step: 520. Total energy = 4156.4791 kcal/mol (4144.4664 without restraints) Performing minimization step: 521. Total energy = 4154.5985 kcal/mol (4142.5894 without restraints) Performing minimization step: 522. Total energy = 4152.7245 kcal/mol (4140.7190 without restraints) Performing minimization step: 523. Total energy = 4150.8569 kcal/mol (4138.8549 without restraints) Performing minimization step: 524. Total energy = 4148.9960 kcal/mol (4136.9978 without restraints) Performing minimization step: 525. Total energy = 4147.1417 kcal/mol (4135.1469 without restraints) Performing minimization step: 526. Total energy = 4145.2933 kcal/mol (4133.3022 without restraints) Performing minimization step: 527. Total energy = 4143.4520 kcal/mol (4131.4644 without restraints) Performing minimization step: 528. Total energy = 4141.6169 kcal/mol (4129.6328 without restraints) Performing minimization step: 529. Total energy = 4139.7885 kcal/mol (4127.8082 without restraints) Performing minimization step: 530. Total energy = 4137.9662 kcal/mol (4125.9896 without restraints) Performing minimization step: 531. Total energy = 4136.1503 kcal/mol (4124.1772 without restraints) Performing minimization step: 532. Total energy = 4134.3410 kcal/mol (4122.3717 without restraints) Performing minimization step: 533. Total energy = 4132.5380 kcal/mol (4120.5721 without restraints) Performing minimization step: 534. Total energy = 4130.7412 kcal/mol (4118.7789 without restraints) Performing minimization step: 535. Total energy = 4128.9508 kcal/mol (4116.9923 without restraints) Performing minimization step: 536. Total energy = 4127.1668 kcal/mol (4115.2118 without restraints) Performing minimization step: 537. Total energy = 4125.3887 kcal/mol (4113.4373 without restraints) Performing minimization step: 538. Total energy = 4123.6169 kcal/mol (4111.6693 without restraints) Performing minimization step: 539. Total energy = 4121.8515 kcal/mol (4109.9074 without restraints) Performing minimization step: 540. Total energy = 4120.0922 kcal/mol (4108.1517 without restraints) Performing minimization step: 541. Total energy = 4118.3387 kcal/mol (4106.4018 without restraints) Performing minimization step: 542. Total energy = 4116.5912 kcal/mol (4104.6579 without restraints) Performing minimization step: 543. Total energy = 4114.8499 kcal/mol (4102.9203 without restraints) Performing minimization step: 544. Total energy = 4113.1148 kcal/mol (4101.1888 without restraints) Performing minimization step: 545. Total energy = 4111.3858 kcal/mol (4099.4635 without restraints) Performing minimization step: 546. Total energy = 4109.6626 kcal/mol (4097.7438 without restraints) Performing minimization step: 547. Total energy = 4107.9455 kcal/mol (4096.0305 without restraints) Performing minimization step: 548. Total energy = 4106.2341 kcal/mol (4094.3226 without restraints) Performing minimization step: 549. Total energy = 4104.5294 kcal/mol (4092.6217 without restraints) Performing minimization step: 550. Total energy = 4102.8302 kcal/mol (4090.9261 without restraints) Performing minimization step: 551. Total energy = 4101.1369 kcal/mol (4089.2363 without restraints) Performing minimization step: 552. Total energy = 4099.4495 kcal/mol (4087.5528 without restraints) Performing minimization step: 553. Total energy = 4097.7680 kcal/mol (4085.8748 without restraints) Performing minimization step: 554. Total energy = 4096.0922 kcal/mol (4084.2028 without restraints) Performing minimization step: 555. Total energy = 4094.4222 kcal/mol (4082.5362 without restraints) Performing minimization step: 556. Total energy = 4092.7581 kcal/mol (4080.8759 without restraints) Performing minimization step: 557. Total energy = 4091.0994 kcal/mol (4079.2208 without restraints) Performing minimization step: 558. Total energy = 4089.4469 kcal/mol (4077.5721 without restraints) Performing minimization step: 559. Total energy = 4087.8005 kcal/mol (4075.9294 without restraints) Performing minimization step: 560. Total energy = 4086.1597 kcal/mol (4074.2922 without restraints) Performing minimization step: 561. Total energy = 4084.5244 kcal/mol (4072.6606 without restraints) Performing minimization step: 562. Total energy = 4082.8951 kcal/mol (4071.0352 without restraints) Performing minimization step: 563. Total energy = 4081.2711 kcal/mol (4069.4147 without restraints) Performing minimization step: 564. Total energy = 4079.6528 kcal/mol (4067.8001 without restraints) Performing minimization step: 565. Total energy = 4078.0401 kcal/mol (4066.1910 without restraints) Performing minimization step: 566. Total energy = 4076.4328 kcal/mol (4064.5875 without restraints) Performing minimization step: 567. Total energy = 4074.8313 kcal/mol (4062.9896 without restraints) Performing minimization step: 568. Total energy = 4073.2351 kcal/mol (4061.3971 without restraints) Performing minimization step: 569. Total energy = 4071.6448 kcal/mol (4059.8105 without restraints) Performing minimization step: 570. Total energy = 4070.0599 kcal/mol (4058.2293 without restraints) Performing minimization step: 571. Total energy = 4068.4805 kcal/mol (4056.6535 without restraints) Performing minimization step: 572. Total energy = 4066.9062 kcal/mol (4055.0829 without restraints) Performing minimization step: 573. Total energy = 4065.3373 kcal/mol (4053.5177 without restraints) Performing minimization step: 574. Total energy = 4063.7740 kcal/mol (4051.9581 without restraints) Performing minimization step: 575. Total energy = 4062.2160 kcal/mol (4050.4038 without restraints) Performing minimization step: 576. Total energy = 4060.6635 kcal/mol (4048.8552 without restraints) Performing minimization step: 577. Total energy = 4059.1162 kcal/mol (4047.3115 without restraints) Performing minimization step: 578. Total energy = 4057.5741 kcal/mol (4045.7730 without restraints) Performing minimization step: 579. Total energy = 4056.0372 kcal/mol (4044.2398 without restraints) Performing minimization step: 580. Total energy = 4054.5055 kcal/mol (4042.7118 without restraints) Performing minimization step: 581. Total energy = 4052.9794 kcal/mol (4041.1894 without restraints) Performing minimization step: 582. Total energy = 4051.4585 kcal/mol (4039.6723 without restraints) Performing minimization step: 583. Total energy = 4049.9428 kcal/mol (4038.1603 without restraints) Performing minimization step: 584. Total energy = 4048.4325 kcal/mol (4036.6537 without restraints) Performing minimization step: 585. Total energy = 4046.9278 kcal/mol (4035.1529 without restraints) Performing minimization step: 586. Total energy = 4045.4277 kcal/mol (4033.6563 without restraints) Performing minimization step: 587. Total energy = 4043.9334 kcal/mol (4032.1657 without restraints) Performing minimization step: 588. Total energy = 4042.4434 kcal/mol (4030.6795 without restraints) Performing minimization step: 589. Total energy = 4040.9586 kcal/mol (4029.1984 without restraints) Performing minimization step: 590. Total energy = 4039.4792 kcal/mol (4027.7228 without restraints) Performing minimization step: 591. Total energy = 4038.0047 kcal/mol (4026.2520 without restraints) Performing minimization step: 592. Total energy = 4036.5352 kcal/mol (4024.7861 without restraints) Performing minimization step: 593. Total energy = 4035.0707 kcal/mol (4023.3255 without restraints) Performing minimization step: 594. Total energy = 4033.6113 kcal/mol (4021.8698 without restraints) Performing minimization step: 595. Total energy = 4032.1567 kcal/mol (4020.4190 without restraints) Performing minimization step: 596. Total energy = 4030.7071 kcal/mol (4018.9734 without restraints) Performing minimization step: 597. Total energy = 4029.2630 kcal/mol (4017.5329 without restraints) Performing minimization step: 598. Total energy = 4027.8233 kcal/mol (4016.0968 without restraints) Performing minimization step: 599. Total energy = 4026.3884 kcal/mol (4014.6656 without restraints) Performing minimization step: 600. Total energy = 4024.9588 kcal/mol (4013.2398 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 601. Total energy = 4023.5339 kcal/mol (4011.8187 without restraints) Performing minimization step: 602. Total energy = 4022.1136 kcal/mol (4010.4022 without restraints) Performing minimization step: 603. Total energy = 4020.6985 kcal/mol (4008.9908 without restraints) Performing minimization step: 604. Total energy = 4019.2882 kcal/mol (4007.5843 without restraints) Performing minimization step: 605. Total energy = 4017.8831 kcal/mol (4006.1829 without restraints) Performing minimization step: 606. Total energy = 4016.4821 kcal/mol (4004.7857 without restraints) Performing minimization step: 607. Total energy = 4015.0861 kcal/mol (4003.3935 without restraints) Performing minimization step: 608. Total energy = 4013.6947 kcal/mol (4002.0058 without restraints) Performing minimization step: 609. Total energy = 4012.3076 kcal/mol (4000.6225 without restraints) Performing minimization step: 610. Total energy = 4010.9254 kcal/mol (3999.2441 without restraints) Performing minimization step: 611. Total energy = 4009.5482 kcal/mol (3997.8707 without restraints) Performing minimization step: 612. Total energy = 4008.1761 kcal/mol (3996.5023 without restraints) Performing minimization step: 613. Total energy = 4006.8083 kcal/mol (3995.1383 without restraints) Performing minimization step: 614. Total energy = 4005.4448 kcal/mol (3993.7785 without restraints) Performing minimization step: 615. Total energy = 4004.0861 kcal/mol (3992.4237 without restraints) Performing minimization step: 616. Total energy = 4002.7322 kcal/mol (3991.0736 without restraints) Performing minimization step: 617. Total energy = 4001.3829 kcal/mol (3989.7281 without restraints) Performing minimization step: 618. Total energy = 4000.0381 kcal/mol (3988.3870 without restraints) Performing minimization step: 619. Total energy = 3998.6972 kcal/mol (3987.0496 without restraints) Performing minimization step: 620. Total energy = 3997.3611 kcal/mol (3985.7176 without restraints) Performing minimization step: 621. Total energy = 3996.0296 kcal/mol (3984.3898 without restraints) Performing minimization step: 622. Total energy = 3994.7031 kcal/mol (3983.0674 without restraints) Performing minimization step: 623. Total energy = 3993.3805 kcal/mol (3981.7485 without restraints) Performing minimization step: 624. Total energy = 3992.0625 kcal/mol (3980.4342 without restraints) Performing minimization step: 625. Total energy = 3990.7494 kcal/mol (3979.1250 without restraints) Performing minimization step: 626. Total energy = 3989.4410 kcal/mol (3977.8202 without restraints) Performing minimization step: 627. Total energy = 3988.1364 kcal/mol (3976.5195 without restraints) Performing minimization step: 628. Total energy = 3986.8355 kcal/mol (3975.2224 without restraints) Performing minimization step: 629. Total energy = 3985.5393 kcal/mol (3973.9301 without restraints) Performing minimization step: 630. Total energy = 3984.2479 kcal/mol (3972.6424 without restraints) Performing minimization step: 631. Total energy = 3982.9606 kcal/mol (3971.3591 without restraints) Performing minimization step: 632. Total energy = 3981.6777 kcal/mol (3970.0800 without restraints) Performing minimization step: 633. Total energy = 3980.3994 kcal/mol (3968.8055 without restraints) Performing minimization step: 634. Total energy = 3979.1248 kcal/mol (3967.5347 without restraints) Performing minimization step: 635. Total energy = 3977.8550 kcal/mol (3966.2687 without restraints) Performing minimization step: 636. Total energy = 3976.5890 kcal/mol (3965.0067 without restraints) Performing minimization step: 637. Total energy = 3975.3283 kcal/mol (3963.7497 without restraints) Performing minimization step: 638. Total energy = 3974.0711 kcal/mol (3962.4964 without restraints) Performing minimization step: 639. Total energy = 3972.8177 kcal/mol (3961.2466 without restraints) Performing minimization step: 640. Total energy = 3971.5684 kcal/mol (3960.0014 without restraints) Performing minimization step: 641. Total energy = 3970.3235 kcal/mol (3958.7602 without restraints) Performing minimization step: 642. Total energy = 3969.0828 kcal/mol (3957.5232 without restraints) Performing minimization step: 643. Total energy = 3967.8465 kcal/mol (3956.2909 without restraints) Performing minimization step: 644. Total energy = 3966.6141 kcal/mol (3955.0624 without restraints) Performing minimization step: 645. Total energy = 3965.3856 kcal/mol (3953.8378 without restraints) Performing minimization step: 646. Total energy = 3964.1610 kcal/mol (3952.6170 without restraints) Performing minimization step: 647. Total energy = 3962.9410 kcal/mol (3951.4008 without restraints) Performing minimization step: 648. Total energy = 3961.7247 kcal/mol (3950.1883 without restraints) Performing minimization step: 649. Total energy = 3960.5123 kcal/mol (3948.9796 without restraints) Performing minimization step: 650. Total energy = 3959.3038 kcal/mol (3947.7752 without restraints) Performing minimization step: 651. Total energy = 3958.0999 kcal/mol (3946.5751 without restraints) Performing minimization step: 652. Total energy = 3956.8996 kcal/mol (3945.3786 without restraints) Performing minimization step: 653. Total energy = 3955.7030 kcal/mol (3944.1859 without restraints) Performing minimization step: 654. Total energy = 3954.5108 kcal/mol (3942.9976 without restraints) Performing minimization step: 655. Total energy = 3953.3217 kcal/mol (3941.8124 without restraints) Performing minimization step: 656. Total energy = 3952.1374 kcal/mol (3940.6319 without restraints) Performing minimization step: 657. Total energy = 3950.9569 kcal/mol (3939.4553 without restraints) Performing minimization step: 658. Total energy = 3949.7799 kcal/mol (3938.2821 without restraints) Performing minimization step: 659. Total energy = 3948.6072 kcal/mol (3937.1133 without restraints) Performing minimization step: 660. Total energy = 3947.4386 kcal/mol (3935.9485 without restraints) Performing minimization step: 661. Total energy = 3946.2732 kcal/mol (3934.7871 without restraints) Performing minimization step: 662. Total energy = 3945.1120 kcal/mol (3933.6297 without restraints) Performing minimization step: 663. Total energy = 3943.9552 kcal/mol (3932.4768 without restraints) Performing minimization step: 664. Total energy = 3942.8014 kcal/mol (3931.3270 without restraints) Performing minimization step: 665. Total energy = 3941.6517 kcal/mol (3930.1810 without restraints) Performing minimization step: 666. Total energy = 3940.5054 kcal/mol (3929.0389 without restraints) Performing minimization step: 667. Total energy = 3939.3631 kcal/mol (3927.9003 without restraints) Performing minimization step: 668. Total energy = 3938.2248 kcal/mol (3926.7657 without restraints) Performing minimization step: 669. Total energy = 3937.0896 kcal/mol (3925.6346 without restraints) Performing minimization step: 670. Total energy = 3935.9584 kcal/mol (3924.5073 without restraints) Performing minimization step: 671. Total energy = 3934.8310 kcal/mol (3923.3838 without restraints) Performing minimization step: 672. Total energy = 3933.7071 kcal/mol (3922.2636 without restraints) Performing minimization step: 673. Total energy = 3932.5868 kcal/mol (3921.1471 without restraints) Performing minimization step: 674. Total energy = 3931.4699 kcal/mol (3920.0343 without restraints) Performing minimization step: 675. Total energy = 3930.3571 kcal/mol (3918.9252 without restraints) Performing minimization step: 676. Total energy = 3929.2473 kcal/mol (3917.8195 without restraints) Performing minimization step: 677. Total energy = 3928.1415 kcal/mol (3916.7178 without restraints) Performing minimization step: 678. Total energy = 3927.0402 kcal/mol (3915.6203 without restraints) Performing minimization step: 679. Total energy = 3925.9415 kcal/mol (3914.5254 without restraints) Performing minimization step: 680. Total energy = 3924.8464 kcal/mol (3913.4342 without restraints) Performing minimization step: 681. Total energy = 3923.7548 kcal/mol (3912.3466 without restraints) Performing minimization step: 682. Total energy = 3922.6671 kcal/mol (3911.2628 without restraints) Performing minimization step: 683. Total energy = 3921.5826 kcal/mol (3910.1821 without restraints) Performing minimization step: 684. Total energy = 3920.5011 kcal/mol (3909.1046 without restraints) Performing minimization step: 685. Total energy = 3919.4235 kcal/mol (3908.0309 without restraints) Performing minimization step: 686. Total energy = 3918.3494 kcal/mol (3906.9607 without restraints) Performing minimization step: 687. Total energy = 3917.2781 kcal/mol (3905.8934 without restraints) Performing minimization step: 688. Total energy = 3916.2111 kcal/mol (3904.8302 without restraints) Performing minimization step: 689. Total energy = 3915.1474 kcal/mol (3903.7704 without restraints) Performing minimization step: 690. Total energy = 3914.0869 kcal/mol (3902.7139 without restraints) Performing minimization step: 691. Total energy = 3913.0301 kcal/mol (3901.6610 without restraints) Performing minimization step: 692. Total energy = 3911.9763 kcal/mol (3900.6110 without restraints) Performing minimization step: 693. Total energy = 3910.9257 kcal/mol (3899.5644 without restraints) Performing minimization step: 694. Total energy = 3909.8785 kcal/mol (3898.5212 without restraints) Performing minimization step: 695. Total energy = 3908.8348 kcal/mol (3897.4816 without restraints) Performing minimization step: 696. Total energy = 3907.7947 kcal/mol (3896.4453 without restraints) Performing minimization step: 697. Total energy = 3906.7581 kcal/mol (3895.4127 without restraints) Performing minimization step: 698. Total energy = 3905.7245 kcal/mol (3894.3827 without restraints) Performing minimization step: 699. Total energy = 3904.6938 kcal/mol (3893.3562 without restraints) Performing minimization step: 700. Total energy = 3903.6668 kcal/mol (3892.3331 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 701. Total energy = 3902.6425 kcal/mol (3891.3127 without restraints) Performing minimization step: 702. Total energy = 3901.6220 kcal/mol (3890.2962 without restraints) Performing minimization step: 703. Total energy = 3900.6043 kcal/mol (3889.2824 without restraints) Performing minimization step: 704. Total energy = 3899.5896 kcal/mol (3888.2717 without restraints) Performing minimization step: 705. Total energy = 3898.5786 kcal/mol (3887.2646 without restraints) Performing minimization step: 706. Total energy = 3897.5702 kcal/mol (3886.2603 without restraints) Performing minimization step: 707. Total energy = 3896.5658 kcal/mol (3885.2597 without restraints) Performing minimization step: 708. Total energy = 3895.5639 kcal/mol (3884.2616 without restraints) Performing minimization step: 709. Total energy = 3894.5650 kcal/mol (3883.2667 without restraints) Performing minimization step: 710. Total energy = 3893.5701 kcal/mol (3882.2758 without restraints) Performing minimization step: 711. Total energy = 3892.5778 kcal/mol (3881.2875 without restraints) Performing minimization step: 712. Total energy = 3891.5885 kcal/mol (3880.3021 without restraints) Performing minimization step: 713. Total energy = 3890.6025 kcal/mol (3879.3201 without restraints) Performing minimization step: 714. Total energy = 3889.6194 kcal/mol (3878.3409 without restraints) Performing minimization step: 715. Total energy = 3888.6396 kcal/mol (3877.3651 without restraints) Performing minimization step: 716. Total energy = 3887.6628 kcal/mol (3876.3923 without restraints) Performing minimization step: 717. Total energy = 3886.6886 kcal/mol (3875.4220 without restraints) Performing minimization step: 718. Total energy = 3885.7178 kcal/mol (3874.4551 without restraints) Performing minimization step: 719. Total energy = 3884.7501 kcal/mol (3873.4914 without restraints) Performing minimization step: 720. Total energy = 3883.7854 kcal/mol (3872.5306 without restraints) Performing minimization step: 721. Total energy = 3882.8233 kcal/mol (3871.5725 without restraints) Performing minimization step: 722. Total energy = 3881.8645 kcal/mol (3870.6176 without restraints) Performing minimization step: 723. Total energy = 3880.9086 kcal/mol (3869.6657 without restraints) Performing minimization step: 724. Total energy = 3879.9558 kcal/mol (3868.7169 without restraints) Performing minimization step: 725. Total energy = 3879.0058 kcal/mol (3867.7709 without restraints) Performing minimization step: 726. Total energy = 3878.0586 kcal/mol (3866.8275 without restraints) Performing minimization step: 727. Total energy = 3877.1144 kcal/mol (3865.8871 without restraints) Performing minimization step: 728. Total energy = 3876.1731 kcal/mol (3864.9501 without restraints) Performing minimization step: 729. Total energy = 3875.2348 kcal/mol (3864.0158 without restraints) Performing minimization step: 730. Total energy = 3874.2999 kcal/mol (3863.0848 without restraints) Performing minimization step: 731. Total energy = 3873.3670 kcal/mol (3862.1560 without restraints) Performing minimization step: 732. Total energy = 3872.4376 kcal/mol (3861.2305 without restraints) Performing minimization step: 733. Total energy = 3871.5108 kcal/mol (3860.3076 without restraints) Performing minimization step: 734. Total energy = 3870.5867 kcal/mol (3859.3875 without restraints) Performing minimization step: 735. Total energy = 3869.6650 kcal/mol (3858.4696 without restraints) Performing minimization step: 736. Total energy = 3868.7462 kcal/mol (3857.5550 without restraints) Performing minimization step: 737. Total energy = 3867.8306 kcal/mol (3856.6433 without restraints) Performing minimization step: 738. Total energy = 3866.9178 kcal/mol (3855.7345 without restraints) Performing minimization step: 739. Total energy = 3866.0079 kcal/mol (3854.8286 without restraints) Performing minimization step: 740. Total energy = 3865.0999 kcal/mol (3853.9245 without restraints) Performing minimization step: 741. Total energy = 3864.1950 kcal/mol (3853.0236 without restraints) Performing minimization step: 742. Total energy = 3863.2931 kcal/mol (3852.1257 without restraints) Performing minimization step: 743. Total energy = 3862.3940 kcal/mol (3851.2305 without restraints) Performing minimization step: 744. Total energy = 3861.4977 kcal/mol (3850.3384 without restraints) Performing minimization step: 745. Total energy = 3860.6042 kcal/mol (3849.4487 without restraints) Performing minimization step: 746. Total energy = 3859.7129 kcal/mol (3848.5614 without restraints) Performing minimization step: 747. Total energy = 3858.8244 kcal/mol (3847.6767 without restraints) Performing minimization step: 748. Total energy = 3857.9387 kcal/mol (3846.7952 without restraints) Performing minimization step: 749. Total energy = 3857.0555 kcal/mol (3845.9159 without restraints) Performing minimization step: 750. Total energy = 3856.1751 kcal/mol (3845.0395 without restraints) Performing minimization step: 751. Total energy = 3855.2967 kcal/mol (3844.1651 without restraints) Performing minimization step: 752. Total energy = 3854.4216 kcal/mol (3843.2942 without restraints) Performing minimization step: 753. Total energy = 3853.5493 kcal/mol (3842.4257 without restraints) Performing minimization step: 754. Total energy = 3852.6794 kcal/mol (3841.5597 without restraints) Performing minimization step: 755. Total energy = 3851.8116 kcal/mol (3840.6960 without restraints) Performing minimization step: 756. Total energy = 3850.9465 kcal/mol (3839.8349 without restraints) Performing minimization step: 757. Total energy = 3850.0840 kcal/mol (3838.9762 without restraints) Performing minimization step: 758. Total energy = 3849.2239 kcal/mol (3838.1202 without restraints) Performing minimization step: 759. Total energy = 3848.3666 kcal/mol (3837.2668 without restraints) Performing minimization step: 760. Total energy = 3847.5118 kcal/mol (3836.4161 without restraints) Performing minimization step: 761. Total energy = 3846.6597 kcal/mol (3835.5679 without restraints) Performing minimization step: 762. Total energy = 3845.8099 kcal/mol (3834.7221 without restraints) Performing minimization step: 763. Total energy = 3844.9626 kcal/mol (3833.8788 without restraints) Performing minimization step: 764. Total energy = 3844.1178 kcal/mol (3833.0381 without restraints) Performing minimization step: 765. Total energy = 3843.2759 kcal/mol (3832.2002 without restraints) Performing minimization step: 766. Total energy = 3842.4362 kcal/mol (3831.3643 without restraints) Performing minimization step: 767. Total energy = 3841.5988 kcal/mol (3830.5310 without restraints) Performing minimization step: 768. Total energy = 3840.7637 kcal/mol (3829.6999 without restraints) Performing minimization step: 769. Total energy = 3839.9314 kcal/mol (3828.8715 without restraints) Performing minimization step: 770. Total energy = 3839.1013 kcal/mol (3828.0454 without restraints) Performing minimization step: 771. Total energy = 3838.2735 kcal/mol (3827.2215 without restraints) Performing minimization step: 772. Total energy = 3837.4479 kcal/mol (3826.4000 without restraints) Performing minimization step: 773. Total energy = 3836.6251 kcal/mol (3825.5812 without restraints) Performing minimization step: 774. Total energy = 3835.8046 kcal/mol (3824.7647 without restraints) Performing minimization step: 775. Total energy = 3834.9860 kcal/mol (3823.9501 without restraints) Performing minimization step: 776. Total energy = 3834.1698 kcal/mol (3823.1379 without restraints) Performing minimization step: 777. Total energy = 3833.3567 kcal/mol (3822.3288 without restraints) Performing minimization step: 778. Total energy = 3832.5458 kcal/mol (3821.5219 without restraints) Performing minimization step: 779. Total energy = 3831.7369 kcal/mol (3820.7170 without restraints) Performing minimization step: 780. Total energy = 3830.9302 kcal/mol (3819.9143 without restraints) Performing minimization step: 781. Total energy = 3830.1262 kcal/mol (3819.1142 without restraints) Performing minimization step: 782. Total energy = 3829.3241 kcal/mol (3818.3162 without restraints) Performing minimization step: 783. Total energy = 3828.5246 kcal/mol (3817.5206 without restraints) Performing minimization step: 784. Total energy = 3827.7269 kcal/mol (3816.7268 without restraints) Performing minimization step: 785. Total energy = 3826.9323 kcal/mol (3815.9363 without restraints) Performing minimization step: 786. Total energy = 3826.1391 kcal/mol (3815.1471 without restraints) Performing minimization step: 787. Total energy = 3825.3486 kcal/mol (3814.3606 without restraints) Performing minimization step: 788. Total energy = 3824.5604 kcal/mol (3813.5763 without restraints) Performing minimization step: 789. Total energy = 3823.7744 kcal/mol (3812.7943 without restraints) Performing minimization step: 790. Total energy = 3822.9900 kcal/mol (3812.0140 without restraints) Performing minimization step: 791. Total energy = 3822.2090 kcal/mol (3811.2371 without restraints) Performing minimization step: 792. Total energy = 3821.4296 kcal/mol (3810.4615 without restraints) Performing minimization step: 793. Total energy = 3820.6518 kcal/mol (3809.6877 without restraints) Performing minimization step: 794. Total energy = 3819.8770 kcal/mol (3808.9169 without restraints) Performing minimization step: 795. Total energy = 3819.1039 kcal/mol (3808.1478 without restraints) Performing minimization step: 796. Total energy = 3818.3333 kcal/mol (3807.3811 without restraints) Performing minimization step: 797. Total energy = 3817.5647 kcal/mol (3806.6166 without restraints) Performing minimization step: 798. Total energy = 3816.7982 kcal/mol (3805.8542 without restraints) Performing minimization step: 799. Total energy = 3816.0341 kcal/mol (3805.0939 without restraints) Performing minimization step: 800. Total energy = 3815.2727 kcal/mol (3804.3366 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 801. Total energy = 3814.5124 kcal/mol (3803.5802 without restraints) Performing minimization step: 802. Total energy = 3813.7545 kcal/mol (3802.8263 without restraints) Performing minimization step: 803. Total energy = 3812.9983 kcal/mol (3802.0740 without restraints) Performing minimization step: 804. Total energy = 3812.2445 kcal/mol (3801.3243 without restraints) Performing minimization step: 805. Total energy = 3811.4931 kcal/mol (3800.5769 without restraints) Performing minimization step: 806. Total energy = 3810.7435 kcal/mol (3799.8311 without restraints) Performing minimization step: 807. Total energy = 3809.9961 kcal/mol (3799.0878 without restraints) Performing minimization step: 808. Total energy = 3809.2505 kcal/mol (3798.3462 without restraints) Performing minimization step: 809. Total energy = 3808.5073 kcal/mol (3797.6070 without restraints) Performing minimization step: 810. Total energy = 3807.7660 kcal/mol (3796.8697 without restraints) Performing minimization step: 811. Total energy = 3807.0264 kcal/mol (3796.1340 without restraints) Performing minimization step: 812. Total energy = 3806.2890 kcal/mol (3795.4006 without restraints) Performing minimization step: 813. Total energy = 3805.5534 kcal/mol (3794.6690 without restraints) Performing minimization step: 814. Total energy = 3804.8201 kcal/mol (3793.9399 without restraints) Performing minimization step: 815. Total energy = 3804.0885 kcal/mol (3793.2120 without restraints) Performing minimization step: 816. Total energy = 3803.3594 kcal/mol (3792.4869 without restraints) Performing minimization step: 817. Total energy = 3802.6321 kcal/mol (3791.7637 without restraints) Performing minimization step: 818. Total energy = 3801.9060 kcal/mol (3791.0415 without restraints) Performing minimization step: 819. Total energy = 3801.1828 kcal/mol (3790.3223 without restraints) Performing minimization step: 820. Total energy = 3800.4609 kcal/mol (3789.6044 without restraints) Performing minimization step: 821. Total energy = 3799.7413 kcal/mol (3788.8887 without restraints) Performing minimization step: 822. Total energy = 3799.0236 kcal/mol (3788.1751 without restraints) Performing minimization step: 823. Total energy = 3798.3081 kcal/mol (3787.4635 without restraints) Performing minimization step: 824. Total energy = 3797.5946 kcal/mol (3786.7539 without restraints) Performing minimization step: 825. Total energy = 3796.8826 kcal/mol (3786.0460 without restraints) Performing minimization step: 826. Total energy = 3796.1722 kcal/mol (3785.3395 without restraints) Performing minimization step: 827. Total energy = 3795.4641 kcal/mol (3784.6353 without restraints) Performing minimization step: 828. Total energy = 3794.7575 kcal/mol (3783.9328 without restraints) Performing minimization step: 829. Total energy = 3794.0534 kcal/mol (3783.2327 without restraints) Performing minimization step: 830. Total energy = 3793.3509 kcal/mol (3782.5341 without restraints) Performing minimization step: 831. Total energy = 3792.6501 kcal/mol (3781.8373 without restraints) Performing minimization step: 832. Total energy = 3791.9518 kcal/mol (3781.1429 without restraints) Performing minimization step: 833. Total energy = 3791.2548 kcal/mol (3780.4499 without restraints) Performing minimization step: 834. Total energy = 3790.5599 kcal/mol (3779.7590 without restraints) Performing minimization step: 835. Total energy = 3789.8666 kcal/mol (3779.0696 without restraints) Performing minimization step: 836. Total energy = 3789.1750 kcal/mol (3778.3821 without restraints) Performing minimization step: 837. Total energy = 3788.4856 kcal/mol (3777.6967 without restraints) Performing minimization step: 838. Total energy = 3787.7978 kcal/mol (3777.0128 without restraints) Performing minimization step: 839. Total energy = 3787.1116 kcal/mol (3776.3305 without restraints) Performing minimization step: 840. Total energy = 3786.4274 kcal/mol (3775.6502 without restraints) Performing minimization step: 841. Total energy = 3785.7447 kcal/mol (3774.9716 without restraints) Performing minimization step: 842. Total energy = 3785.0641 kcal/mol (3774.2949 without restraints) Performing minimization step: 843. Total energy = 3784.3853 kcal/mol (3773.6201 without restraints) Performing minimization step: 844. Total energy = 3783.7083 kcal/mol (3772.9469 without restraints) Performing minimization step: 845. Total energy = 3783.0328 kcal/mol (3772.2755 without restraints) Performing minimization step: 846. Total energy = 3782.3586 kcal/mol (3771.6053 without restraints) Performing minimization step: 847. Total energy = 3781.6868 kcal/mol (3770.9374 without restraints) Performing minimization step: 848. Total energy = 3781.0168 kcal/mol (3770.2714 without restraints) Performing minimization step: 849. Total energy = 3780.3481 kcal/mol (3769.6065 without restraints) Performing minimization step: 850. Total energy = 3779.6813 kcal/mol (3768.9438 without restraints) Performing minimization step: 851. Total energy = 3779.0163 kcal/mol (3768.2827 without restraints) Performing minimization step: 852. Total energy = 3778.3530 kcal/mol (3767.6235 without restraints) Performing minimization step: 853. Total energy = 3777.6911 kcal/mol (3766.9655 without restraints) Performing minimization step: 854. Total energy = 3777.0312 kcal/mol (3766.3096 without restraints) Performing minimization step: 855. Total energy = 3776.3730 kcal/mol (3765.6552 without restraints) Performing minimization step: 856. Total energy = 3775.7164 kcal/mol (3765.0026 without restraints) Performing minimization step: 857. Total energy = 3775.0620 kcal/mol (3764.3522 without restraints) Performing minimization step: 858. Total energy = 3774.4085 kcal/mol (3763.7026 without restraints) Performing minimization step: 859. Total energy = 3773.7568 kcal/mol (3763.0548 without restraints) Performing minimization step: 860. Total energy = 3773.1064 kcal/mol (3762.4083 without restraints) Performing minimization step: 861. Total energy = 3772.4584 kcal/mol (3761.7643 without restraints) Performing minimization step: 862. Total energy = 3771.8117 kcal/mol (3761.1215 without restraints) Performing minimization step: 863. Total energy = 3771.1665 kcal/mol (3760.4803 without restraints) Performing minimization step: 864. Total energy = 3770.5228 kcal/mol (3759.8406 without restraints) Performing minimization step: 865. Total energy = 3769.8809 kcal/mol (3759.2025 without restraints) Performing minimization step: 866. Total energy = 3769.2402 kcal/mol (3758.5657 without restraints) Performing minimization step: 867. Total energy = 3768.6015 kcal/mol (3757.9310 without restraints) Performing minimization step: 868. Total energy = 3767.9642 kcal/mol (3757.2976 without restraints) Performing minimization step: 869. Total energy = 3767.3289 kcal/mol (3756.6662 without restraints) Performing minimization step: 870. Total energy = 3766.6946 kcal/mol (3756.0359 without restraints) Performing minimization step: 871. Total energy = 3766.0628 kcal/mol (3755.4079 without restraints) Performing minimization step: 872. Total energy = 3765.4329 kcal/mol (3754.7821 without restraints) Performing minimization step: 873. Total energy = 3764.8034 kcal/mol (3754.1565 without restraints) Performing minimization step: 874. Total energy = 3764.1754 kcal/mol (3753.5324 without restraints) Performing minimization step: 875. Total energy = 3763.5490 kcal/mol (3752.9100 without restraints) Performing minimization step: 876. Total energy = 3762.9245 kcal/mol (3752.2894 without restraints) Performing minimization step: 877. Total energy = 3762.3012 kcal/mol (3751.6700 without restraints) Performing minimization step: 878. Total energy = 3761.6796 kcal/mol (3751.0523 without restraints) Performing minimization step: 879. Total energy = 3761.0595 kcal/mol (3750.4361 without restraints) Performing minimization step: 880. Total energy = 3760.4408 kcal/mol (3749.8212 without restraints) Performing minimization step: 881. Total energy = 3759.8235 kcal/mol (3749.2080 without restraints) Performing minimization step: 882. Total energy = 3759.2079 kcal/mol (3748.5963 without restraints) Performing minimization step: 883. Total energy = 3758.5940 kcal/mol (3747.9862 without restraints) Performing minimization step: 884. Total energy = 3757.9819 kcal/mol (3747.3782 without restraints) Performing minimization step: 885. Total energy = 3757.3707 kcal/mol (3746.7711 without restraints) Performing minimization step: 886. Total energy = 3756.7610 kcal/mol (3746.1650 without restraints) Performing minimization step: 887. Total energy = 3756.1519 kcal/mol (3745.5599 without restraints) Performing minimization step: 888. Total energy = 3755.5452 kcal/mol (3744.9571 without restraints) Performing minimization step: 889. Total energy = 3754.9400 kcal/mol (3744.3558 without restraints) Performing minimization step: 890. Total energy = 3754.3357 kcal/mol (3743.7553 without restraints) Performing minimization step: 891. Total energy = 3753.7335 kcal/mol (3743.1571 without restraints) Performing minimization step: 892. Total energy = 3753.1325 kcal/mol (3742.5599 without restraints) Performing minimization step: 893. Total energy = 3752.5329 kcal/mol (3741.9643 without restraints) Performing minimization step: 894. Total energy = 3751.9347 kcal/mol (3741.3700 without restraints) Performing minimization step: 895. Total energy = 3751.3383 kcal/mol (3740.7777 without restraints) Performing minimization step: 896. Total energy = 3750.7429 kcal/mol (3740.1859 without restraints) Performing minimization step: 897. Total energy = 3750.1485 kcal/mol (3739.5955 without restraints) Performing minimization step: 898. Total energy = 3749.5560 kcal/mol (3739.0070 without restraints) Performing minimization step: 899. Total energy = 3748.9651 kcal/mol (3738.4198 without restraints) Performing minimization step: 900. Total energy = 3748.3748 kcal/mol (3737.8333 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 901. Total energy = 3747.7861 kcal/mol (3737.2487 without restraints) Performing minimization step: 902. Total energy = 3747.1993 kcal/mol (3736.6657 without restraints) Performing minimization step: 903. Total energy = 3746.6138 kcal/mol (3736.0841 without restraints) Performing minimization step: 904. Total energy = 3746.0295 kcal/mol (3735.5038 without restraints) Performing minimization step: 905. Total energy = 3745.4457 kcal/mol (3734.9238 without restraints) Performing minimization step: 906. Total energy = 3744.8643 kcal/mol (3734.3462 without restraints) Performing minimization step: 907. Total energy = 3744.2845 kcal/mol (3733.7704 without restraints) Performing minimization step: 908. Total energy = 3743.7055 kcal/mol (3733.1952 without restraints) Performing minimization step: 909. Total energy = 3743.1281 kcal/mol (3732.6216 without restraints) Performing minimization step: 910. Total energy = 3742.5523 kcal/mol (3732.0500 without restraints) Performing minimization step: 911. Total energy = 3741.9774 kcal/mol (3731.4788 without restraints) Performing minimization step: 912. Total energy = 3741.4040 kcal/mol (3730.9092 without restraints) Performing minimization step: 913. Total energy = 3740.8318 kcal/mol (3730.3409 without restraints) Performing minimization step: 914. Total energy = 3740.2612 kcal/mol (3729.7744 without restraints) Performing minimization step: 915. Total energy = 3739.6919 kcal/mol (3729.2088 without restraints) Performing minimization step: 916. Total energy = 3739.1239 kcal/mol (3728.6446 without restraints) Performing minimization step: 917. Total energy = 3738.5570 kcal/mol (3728.0816 without restraints) Performing minimization step: 918. Total energy = 3737.9913 kcal/mol (3727.5198 without restraints) Performing minimization step: 919. Total energy = 3737.4265 kcal/mol (3726.9588 without restraints) Performing minimization step: 920. Total energy = 3736.8637 kcal/mol (3726.3999 without restraints) Performing minimization step: 921. Total energy = 3736.3020 kcal/mol (3725.8421 without restraints) Performing minimization step: 922. Total energy = 3735.7408 kcal/mol (3725.2847 without restraints) Performing minimization step: 923. Total energy = 3735.1814 kcal/mol (3724.7292 without restraints) Performing minimization step: 924. Total energy = 3734.6241 kcal/mol (3724.1757 without restraints) Performing minimization step: 925. Total energy = 3734.0673 kcal/mol (3723.6227 without restraints) Performing minimization step: 926. Total energy = 3733.5117 kcal/mol (3723.0709 without restraints) Performing minimization step: 927. Total energy = 3732.9573 kcal/mol (3722.5204 without restraints) Performing minimization step: 928. Total energy = 3732.4042 kcal/mol (3721.9712 without restraints) Performing minimization step: 929. Total energy = 3731.8525 kcal/mol (3721.4233 without restraints) Performing minimization step: 930. Total energy = 3731.3017 kcal/mol (3720.8764 without restraints) Performing minimization step: 931. Total energy = 3730.7523 kcal/mol (3720.3308 without restraints) Performing minimization step: 932. Total energy = 3730.2038 kcal/mol (3719.7863 without restraints) Performing minimization step: 933. Total energy = 3729.6574 kcal/mol (3719.2437 without restraints) Performing minimization step: 934. Total energy = 3729.1115 kcal/mol (3718.7014 without restraints) Performing minimization step: 935. Total energy = 3728.5663 kcal/mol (3718.1602 without restraints) Performing minimization step: 936. Total energy = 3728.0230 kcal/mol (3717.6207 without restraints) Performing minimization step: 937. Total energy = 3727.4805 kcal/mol (3717.0821 without restraints) Performing minimization step: 938. Total energy = 3726.9395 kcal/mol (3716.5449 without restraints) Performing minimization step: 939. Total energy = 3726.3996 kcal/mol (3716.0087 without restraints) Performing minimization step: 940. Total energy = 3725.8605 kcal/mol (3715.4736 without restraints) Performing minimization step: 941. Total energy = 3725.3233 kcal/mol (3714.9402 without restraints) Performing minimization step: 942. Total energy = 3724.7874 kcal/mol (3714.4081 without restraints) Performing minimization step: 943. Total energy = 3724.2523 kcal/mol (3713.8768 without restraints) Performing minimization step: 944. Total energy = 3723.7183 kcal/mol (3713.3465 without restraints) Performing minimization step: 945. Total energy = 3723.1856 kcal/mol (3712.8177 without restraints) Performing minimization step: 946. Total energy = 3722.6538 kcal/mol (3712.2897 without restraints) Performing minimization step: 947. Total energy = 3722.1231 kcal/mol (3711.7629 without restraints) Performing minimization step: 948. Total energy = 3721.5941 kcal/mol (3711.2377 without restraints) Performing minimization step: 949. Total energy = 3721.0659 kcal/mol (3710.7133 without restraints) Performing minimization step: 950. Total energy = 3720.5385 kcal/mol (3710.1898 without restraints) Performing minimization step: 951. Total energy = 3720.0125 kcal/mol (3709.6675 without restraints) Performing minimization step: 952. Total energy = 3719.4877 kcal/mol (3709.1467 without restraints) Performing minimization step: 953. Total energy = 3718.9637 kcal/mol (3708.6262 without restraints) Performing minimization step: 954. Total energy = 3718.4410 kcal/mol (3708.1074 without restraints) Performing minimization step: 955. Total energy = 3717.9195 kcal/mol (3707.5898 without restraints) Performing minimization step: 956. Total energy = 3717.3992 kcal/mol (3707.0732 without restraints) Performing minimization step: 957. Total energy = 3716.8797 kcal/mol (3706.5576 without restraints) Performing minimization step: 958. Total energy = 3716.3616 kcal/mol (3706.0432 without restraints) Performing minimization step: 959. Total energy = 3715.8447 kcal/mol (3705.5301 without restraints) Performing minimization step: 960. Total energy = 3715.3283 kcal/mol (3705.0175 without restraints) Performing minimization step: 961. Total energy = 3714.8135 kcal/mol (3704.5066 without restraints) Performing minimization step: 962. Total energy = 3714.3000 kcal/mol (3703.9969 without restraints) Performing minimization step: 963. Total energy = 3713.7869 kcal/mol (3703.4874 without restraints) Performing minimization step: 964. Total energy = 3713.2753 kcal/mol (3702.9796 without restraints) Performing minimization step: 965. Total energy = 3712.7646 kcal/mol (3702.4727 without restraints) Performing minimization step: 966. Total energy = 3712.2550 kcal/mol (3701.9669 without restraints) Performing minimization step: 967. Total energy = 3711.7464 kcal/mol (3701.4621 without restraints) Performing minimization step: 968. Total energy = 3711.2391 kcal/mol (3700.9586 without restraints) Performing minimization step: 969. Total energy = 3710.7328 kcal/mol (3700.4562 without restraints) Performing minimization step: 970. Total energy = 3710.2277 kcal/mol (3699.9549 without restraints) Performing minimization step: 971. Total energy = 3709.7235 kcal/mol (3699.4543 without restraints) Performing minimization step: 972. Total energy = 3709.2200 kcal/mol (3698.9545 without restraints) Performing minimization step: 973. Total energy = 3708.7178 kcal/mol (3698.4563 without restraints) Performing minimization step: 974. Total energy = 3708.2167 kcal/mol (3697.9588 without restraints) Performing minimization step: 975. Total energy = 3707.7160 kcal/mol (3697.4619 without restraints) Performing minimization step: 976. Total energy = 3707.2165 kcal/mol (3696.9660 without restraints) Performing minimization step: 977. Total energy = 3706.7180 kcal/mol (3696.4713 without restraints) Performing minimization step: 978. Total energy = 3706.2214 kcal/mol (3695.9785 without restraints) Performing minimization step: 979. Total energy = 3705.7251 kcal/mol (3695.4858 without restraints) Performing minimization step: 980. Total energy = 3705.2295 kcal/mol (3694.9942 without restraints) Performing minimization step: 981. Total energy = 3704.7353 kcal/mol (3694.5038 without restraints) Performing minimization step: 982. Total energy = 3704.2422 kcal/mol (3694.0144 without restraints) Performing minimization step: 983. Total energy = 3703.7497 kcal/mol (3693.5256 without restraints) Performing minimization step: 984. Total energy = 3703.2587 kcal/mol (3693.0383 without restraints) Performing minimization step: 985. Total energy = 3702.7685 kcal/mol (3692.5519 without restraints) Performing minimization step: 986. Total energy = 3702.2791 kcal/mol (3692.0662 without restraints) Performing minimization step: 987. Total energy = 3701.7910 kcal/mol (3691.5819 without restraints) Performing minimization step: 988. Total energy = 3701.3035 kcal/mol (3691.0982 without restraints) Performing minimization step: 989. Total energy = 3700.8174 kcal/mol (3690.6158 without restraints) Performing minimization step: 990. Total energy = 3700.3318 kcal/mol (3690.1339 without restraints) Performing minimization step: 991. Total energy = 3699.8475 kcal/mol (3689.6533 without restraints) Performing minimization step: 992. Total energy = 3699.3639 kcal/mol (3689.1734 without restraints) Performing minimization step: 993. Total energy = 3698.8812 kcal/mol (3688.6945 without restraints) Performing minimization step: 994. Total energy = 3698.3997 kcal/mol (3688.2168 without restraints) Performing minimization step: 995. Total energy = 3697.9196 kcal/mol (3687.7403 without restraints) Performing minimization step: 996. Total energy = 3697.4399 kcal/mol (3687.2643 without restraints) Performing minimization step: 997. Total energy = 3696.9612 kcal/mol (3686.7895 without restraints) Performing minimization step: 998. Total energy = 3696.4837 kcal/mol (3686.3156 without restraints) Performing minimization step: 999. Total energy = 3696.0066 kcal/mol (3685.8424 without restraints) Performing minimization step: 1000. Total energy = 3695.5304 kcal/mol (3685.3697 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 3695.0553 kcal/mol (3684.8983 without restraints) Performing minimization step: 1002. Total energy = 3694.5812 kcal/mol (3684.4280 without restraints) Performing minimization step: 1003. Total energy = 3694.1076 kcal/mol (3683.9579 without restraints) Performing minimization step: 1004. Total energy = 3693.6350 kcal/mol (3683.4892 without restraints) Performing minimization step: 1005. Total energy = 3693.1638 kcal/mol (3683.0218 without restraints) Performing minimization step: 1006. Total energy = 3692.6932 kcal/mol (3682.5548 without restraints) Performing minimization step: 1007. Total energy = 3692.2234 kcal/mol (3682.0887 without restraints) Performing minimization step: 1008. Total energy = 3691.7550 kcal/mol (3681.6240 without restraints) Performing minimization step: 1009. Total energy = 3691.2869 kcal/mol (3681.1597 without restraints) Performing minimization step: 1010. Total energy = 3690.8200 kcal/mol (3680.6964 without restraints) Performing minimization step: 1011. Total energy = 3690.3540 kcal/mol (3680.2341 without restraints) Performing minimization step: 1012. Total energy = 3689.8887 kcal/mol (3679.7725 without restraints) Performing minimization step: 1013. Total energy = 3689.4232 kcal/mol (3679.3107 without restraints) Performing minimization step: 1014. Total energy = 3688.9598 kcal/mol (3678.8510 without restraints) Performing minimization step: 1015. Total energy = 3688.4971 kcal/mol (3678.3920 without restraints) Performing minimization step: 1016. Total energy = 3688.0357 kcal/mol (3677.9342 without restraints) Performing minimization step: 1017. Total energy = 3687.5751 kcal/mol (3677.4774 without restraints) Performing minimization step: 1018. Total energy = 3687.1153 kcal/mol (3677.0213 without restraints) Performing minimization step: 1019. Total energy = 3686.6564 kcal/mol (3676.5660 without restraints) Performing minimization step: 1020. Total energy = 3686.1976 kcal/mol (3676.1109 without restraints) Performing minimization step: 1021. Total energy = 3685.7403 kcal/mol (3675.6573 without restraints) Performing minimization step: 1022. Total energy = 3685.2840 kcal/mol (3675.2046 without restraints) Performing minimization step: 1023. Total energy = 3684.8286 kcal/mol (3674.7530 without restraints) Performing minimization step: 1024. Total energy = 3684.3740 kcal/mol (3674.3019 without restraints) Performing minimization step: 1025. Total energy = 3683.9194 kcal/mol (3673.8510 without restraints) Performing minimization step: 1026. Total energy = 3683.4661 kcal/mol (3673.4014 without restraints) Performing minimization step: 1027. Total energy = 3683.0143 kcal/mol (3672.9534 without restraints) Performing minimization step: 1028. Total energy = 3682.5631 kcal/mol (3672.5058 without restraints) Performing minimization step: 1029. Total energy = 3682.1126 kcal/mol (3672.0589 without restraints) Performing minimization step: 1030. Total energy = 3681.6625 kcal/mol (3671.6123 without restraints) Performing minimization step: 1031. Total energy = 3681.2136 kcal/mol (3671.1672 without restraints) Performing minimization step: 1032. Total energy = 3680.7656 kcal/mol (3670.7228 without restraints) Performing minimization step: 1033. Total energy = 3680.3183 kcal/mol (3670.2792 without restraints) Performing minimization step: 1034. Total energy = 3679.8717 kcal/mol (3669.8364 without restraints) Performing minimization step: 1035. Total energy = 3679.4260 kcal/mol (3669.3943 without restraints) Performing minimization step: 1036. Total energy = 3678.9812 kcal/mol (3668.9531 without restraints) Performing minimization step: 1037. Total energy = 3678.5373 kcal/mol (3668.5128 without restraints) Performing minimization step: 1038. Total energy = 3678.0942 kcal/mol (3668.0733 without restraints) Performing minimization step: 1039. Total energy = 3677.6519 kcal/mol (3667.6349 without restraints) Performing minimization step: 1040. Total energy = 3677.2102 kcal/mol (3667.1965 without restraints) Performing minimization step: 1041. Total energy = 3676.7692 kcal/mol (3666.7593 without restraints) Performing minimization step: 1042. Total energy = 3676.3294 kcal/mol (3666.3232 without restraints) Performing minimization step: 1043. Total energy = 3675.8901 kcal/mol (3665.8875 without restraints) Performing minimization step: 1044. Total energy = 3675.4518 kcal/mol (3665.4529 without restraints) Performing minimization step: 1045. Total energy = 3675.0141 kcal/mol (3665.0187 without restraints) Performing minimization step: 1046. Total energy = 3674.5775 kcal/mol (3664.5857 without restraints) Performing minimization step: 1047. Total energy = 3674.1412 kcal/mol (3664.1531 without restraints) Performing minimization step: 1048. Total energy = 3673.7059 kcal/mol (3663.7214 without restraints) Performing minimization step: 1049. Total energy = 3673.2718 kcal/mol (3663.2909 without restraints) Performing minimization step: 1050. Total energy = 3672.8382 kcal/mol (3662.8609 without restraints) Performing minimization step: 1051. Total energy = 3672.4056 kcal/mol (3662.4320 without restraints) Performing minimization step: 1052. Total energy = 3671.9733 kcal/mol (3662.0033 without restraints) Performing minimization step: 1053. Total energy = 3671.5417 kcal/mol (3661.5753 without restraints) Performing minimization step: 1054. Total energy = 3671.1104 kcal/mol (3661.1472 without restraints) Performing minimization step: 1055. Total energy = 3670.6802 kcal/mol (3660.7211 without restraints) Performing minimization step: 1056. Total energy = 3670.2510 kcal/mol (3660.2954 without restraints) Performing minimization step: 1057. Total energy = 3669.8229 kcal/mol (3659.8709 without restraints) Performing minimization step: 1058. Total energy = 3669.3948 kcal/mol (3659.4464 without restraints) Performing minimization step: 1059. Total energy = 3668.9677 kcal/mol (3659.0229 without restraints) Performing minimization step: 1060. Total energy = 3668.5411 kcal/mol (3658.5997 without restraints) Performing minimization step: 1061. Total energy = 3668.1153 kcal/mol (3658.1777 without restraints) Performing minimization step: 1062. Total energy = 3667.6905 kcal/mol (3657.7565 without restraints) Performing minimization step: 1063. Total energy = 3667.2668 kcal/mol (3657.3365 without restraints) Performing minimization step: 1064. Total energy = 3666.8433 kcal/mol (3656.9165 without restraints) Performing minimization step: 1065. Total energy = 3666.4208 kcal/mol (3656.4976 without restraints) Performing minimization step: 1066. Total energy = 3665.9991 kcal/mol (3656.0796 without restraints) Performing minimization step: 1067. Total energy = 3665.5777 kcal/mol (3655.6616 without restraints) Performing minimization step: 1068. Total energy = 3665.1570 kcal/mol (3655.2446 without restraints) Performing minimization step: 1069. Total energy = 3664.7367 kcal/mol (3654.8279 without restraints) Performing minimization step: 1070. Total energy = 3664.3174 kcal/mol (3654.4122 without restraints) Performing minimization step: 1071. Total energy = 3663.8989 kcal/mol (3653.9972 without restraints) Performing minimization step: 1072. Total energy = 3663.4814 kcal/mol (3653.5833 without restraints) Performing minimization step: 1073. Total energy = 3663.0645 kcal/mol (3653.1700 without restraints) Performing minimization step: 1074. Total energy = 3662.6481 kcal/mol (3652.7571 without restraints) Performing minimization step: 1075. Total energy = 3662.2326 kcal/mol (3652.3452 without restraints) Performing minimization step: 1076. Total energy = 3661.8175 kcal/mol (3651.9336 without restraints) Performing minimization step: 1077. Total energy = 3661.4035 kcal/mol (3651.5234 without restraints) Performing minimization step: 1078. Total energy = 3660.9901 kcal/mol (3651.1130 without restraints) Performing minimization step: 1079. Total energy = 3660.5767 kcal/mol (3650.7034 without restraints) Performing minimization step: 1080. Total energy = 3660.1647 kcal/mol (3650.2950 without restraints) Performing minimization step: 1081. Total energy = 3659.7530 kcal/mol (3649.8869 without restraints) Performing minimization step: 1082. Total energy = 3659.3426 kcal/mol (3649.4802 without restraints) Performing minimization step: 1083. Total energy = 3658.9324 kcal/mol (3649.0734 without restraints) Performing minimization step: 1084. Total energy = 3658.5230 kcal/mol (3648.6676 without restraints) Performing minimization step: 1085. Total energy = 3658.1143 kcal/mol (3648.2625 without restraints) Performing minimization step: 1086. Total energy = 3657.7058 kcal/mol (3647.8575 without restraints) Performing minimization step: 1087. Total energy = 3657.2980 kcal/mol (3647.4532 without restraints) Performing minimization step: 1088. Total energy = 3656.8914 kcal/mol (3647.0503 without restraints) Performing minimization step: 1089. Total energy = 3656.4853 kcal/mol (3646.6480 without restraints) Performing minimization step: 1090. Total energy = 3656.0802 kcal/mol (3646.2460 without restraints) Performing minimization step: 1091. Total energy = 3655.6754 kcal/mol (3645.8448 without restraints) Performing minimization step: 1092. Total energy = 3655.2710 kcal/mol (3645.4440 without restraints) Performing minimization step: 1093. Total energy = 3654.8673 kcal/mol (3645.0438 without restraints) Performing minimization step: 1094. Total energy = 3654.4648 kcal/mol (3644.6448 without restraints) Performing minimization step: 1095. Total energy = 3654.0625 kcal/mol (3644.2461 without restraints) Performing minimization step: 1096. Total energy = 3653.6608 kcal/mol (3643.8477 without restraints) Performing minimization step: 1097. Total energy = 3653.2599 kcal/mol (3643.4506 without restraints) Performing minimization step: 1098. Total energy = 3652.8601 kcal/mol (3643.0544 without restraints) Performing minimization step: 1099. Total energy = 3652.4605 kcal/mol (3642.6582 without restraints) Performing minimization step: 1100. Total energy = 3652.0618 kcal/mol (3642.2630 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 3651.6636 kcal/mol (3641.8683 without restraints) Performing minimization step: 1102. Total energy = 3651.2656 kcal/mol (3641.4738 without restraints) Performing minimization step: 1103. Total energy = 3650.8686 kcal/mol (3641.0805 without restraints) Performing minimization step: 1104. Total energy = 3650.4728 kcal/mol (3640.6881 without restraints) Performing minimization step: 1105. Total energy = 3650.0771 kcal/mol (3640.2959 without restraints) Performing minimization step: 1106. Total energy = 3649.6819 kcal/mol (3639.9042 without restraints) Performing minimization step: 1107. Total energy = 3649.2875 kcal/mol (3639.5133 without restraints) Performing minimization step: 1108. Total energy = 3648.8932 kcal/mol (3639.1224 without restraints) Performing minimization step: 1109. Total energy = 3648.4999 kcal/mol (3638.7327 without restraints) Performing minimization step: 1110. Total energy = 3648.1075 kcal/mol (3638.3438 without restraints) Performing minimization step: 1111. Total energy = 3647.7154 kcal/mol (3637.9551 without restraints) Performing minimization step: 1112. Total energy = 3647.3239 kcal/mol (3637.5672 without restraints) Performing minimization step: 1113. Total energy = 3646.9329 kcal/mol (3637.1799 without restraints) Performing minimization step: 1114. Total energy = 3646.5425 kcal/mol (3636.7928 without restraints) Performing minimization step: 1115. Total energy = 3646.1530 kcal/mol (3636.4068 without restraints) Performing minimization step: 1116. Total energy = 3645.7639 kcal/mol (3636.0212 without restraints) Performing minimization step: 1117. Total energy = 3645.3756 kcal/mol (3635.6364 without restraints) Performing minimization step: 1118. Total energy = 3644.9873 kcal/mol (3635.2515 without restraints) Performing minimization step: 1119. Total energy = 3644.5999 kcal/mol (3634.8677 without restraints) Performing minimization step: 1120. Total energy = 3644.2133 kcal/mol (3634.4844 without restraints) Performing minimization step: 1121. Total energy = 3643.8274 kcal/mol (3634.1022 without restraints) Performing minimization step: 1122. Total energy = 3643.4423 kcal/mol (3633.7204 without restraints) Performing minimization step: 1123. Total energy = 3643.0575 kcal/mol (3633.3391 without restraints) Performing minimization step: 1124. Total energy = 3642.6728 kcal/mol (3632.9578 without restraints) Performing minimization step: 1125. Total energy = 3642.2891 kcal/mol (3632.5777 without restraints) Performing minimization step: 1126. Total energy = 3641.9057 kcal/mol (3632.1978 without restraints) Performing minimization step: 1127. Total energy = 3641.5233 kcal/mol (3631.8189 without restraints) Performing minimization step: 1128. Total energy = 3641.1414 kcal/mol (3631.4405 without restraints) Performing minimization step: 1129. Total energy = 3640.7603 kcal/mol (3631.0627 without restraints) Performing minimization step: 1130. Total energy = 3640.3797 kcal/mol (3630.6856 without restraints) Performing minimization step: 1131. Total energy = 3639.9994 kcal/mol (3630.3088 without restraints) Performing minimization step: 1132. Total energy = 3639.6197 kcal/mol (3629.9326 without restraints) Performing minimization step: 1133. Total energy = 3639.2407 kcal/mol (3629.5570 without restraints) Performing minimization step: 1134. Total energy = 3638.8620 kcal/mol (3629.1816 without restraints) Performing minimization step: 1135. Total energy = 3638.4840 kcal/mol (3628.8071 without restraints) Performing minimization step: 1136. Total energy = 3638.1066 kcal/mol (3628.4332 without restraints) Performing minimization step: 1137. Total energy = 3637.7298 kcal/mol (3628.0600 without restraints) Performing minimization step: 1138. Total energy = 3637.3537 kcal/mol (3627.6873 without restraints) Performing minimization step: 1139. Total energy = 3636.9781 kcal/mol (3627.3150 without restraints) Performing minimization step: 1140. Total energy = 3636.6031 kcal/mol (3626.9437 without restraints) Performing minimization step: 1141. Total energy = 3636.2289 kcal/mol (3626.5728 without restraints) Performing minimization step: 1142. Total energy = 3635.8557 kcal/mol (3626.2034 without restraints) Performing minimization step: 1143. Total energy = 3635.4831 kcal/mol (3625.8339 without restraints) Performing minimization step: 1144. Total energy = 3635.1103 kcal/mol (3625.4644 without restraints) Performing minimization step: 1145. Total energy = 3634.7376 kcal/mol (3625.0951 without restraints) Performing minimization step: 1146. Total energy = 3634.3656 kcal/mol (3624.7266 without restraints) Performing minimization step: 1147. Total energy = 3633.9956 kcal/mol (3624.3602 without restraints) Performing minimization step: 1148. Total energy = 3633.6245 kcal/mol (3623.9925 without restraints) Performing minimization step: 1149. Total energy = 3633.2545 kcal/mol (3623.6259 without restraints) Performing minimization step: 1150. Total energy = 3632.8852 kcal/mol (3623.2600 without restraints) Performing minimization step: 1151. Total energy = 3632.5163 kcal/mol (3622.8944 without restraints) Performing minimization step: 1152. Total energy = 3632.1477 kcal/mol (3622.5293 without restraints) Performing minimization step: 1153. Total energy = 3631.7796 kcal/mol (3622.1646 without restraints) Performing minimization step: 1154. Total energy = 3631.4113 kcal/mol (3621.7996 without restraints) Performing minimization step: 1155. Total energy = 3631.0444 kcal/mol (3621.4363 without restraints) Performing minimization step: 1156. Total energy = 3630.6781 kcal/mol (3621.0734 without restraints) Performing minimization step: 1157. Total energy = 3630.3118 kcal/mol (3620.7105 without restraints) Performing minimization step: 1158. Total energy = 3629.9464 kcal/mol (3620.3486 without restraints) Performing minimization step: 1159. Total energy = 3629.5815 kcal/mol (3619.9870 without restraints) Performing minimization step: 1160. Total energy = 3629.2173 kcal/mol (3619.6262 without restraints) Performing minimization step: 1161. Total energy = 3628.8539 kcal/mol (3619.2662 without restraints) Performing minimization step: 1162. Total energy = 3628.4908 kcal/mol (3618.9065 without restraints) Performing minimization step: 1163. Total energy = 3628.1280 kcal/mol (3618.5472 without restraints) Performing minimization step: 1164. Total energy = 3627.7654 kcal/mol (3618.1880 without restraints) Performing minimization step: 1165. Total energy = 3627.4038 kcal/mol (3617.8297 without restraints) Performing minimization step: 1166. Total energy = 3627.0427 kcal/mol (3617.4720 without restraints) Performing minimization step: 1167. Total energy = 3626.6823 kcal/mol (3617.1150 without restraints) Performing minimization step: 1168. Total energy = 3626.3217 kcal/mol (3616.7577 without restraints) Performing minimization step: 1169. Total energy = 3625.9617 kcal/mol (3616.4012 without restraints) Performing minimization step: 1170. Total energy = 3625.6024 kcal/mol (3616.0453 without restraints) Performing minimization step: 1171. Total energy = 3625.2443 kcal/mol (3615.6906 without restraints) Performing minimization step: 1172. Total energy = 3624.8861 kcal/mol (3615.3357 without restraints) Performing minimization step: 1173. Total energy = 3624.5288 kcal/mol (3614.9818 without restraints) Performing minimization step: 1174. Total energy = 3624.1719 kcal/mol (3614.6283 without restraints) Performing minimization step: 1175. Total energy = 3623.8153 kcal/mol (3614.2752 without restraints) Performing minimization step: 1176. Total energy = 3623.4589 kcal/mol (3613.9221 without restraints) Performing minimization step: 1177. Total energy = 3623.1030 kcal/mol (3613.5696 without restraints) Performing minimization step: 1178. Total energy = 3622.7474 kcal/mol (3613.2171 without restraints) Performing minimization step: 1179. Total energy = 3622.3923 kcal/mol (3612.8656 without restraints) Performing minimization step: 1180. Total energy = 3622.0377 kcal/mol (3612.5143 without restraints) Performing minimization step: 1181. Total energy = 3621.6842 kcal/mol (3612.1643 without restraints) Performing minimization step: 1182. Total energy = 3621.3306 kcal/mol (3611.8140 without restraints) Performing minimization step: 1183. Total energy = 3620.9779 kcal/mol (3611.4646 without restraints) Performing minimization step: 1184. Total energy = 3620.6253 kcal/mol (3611.1152 without restraints) Performing minimization step: 1185. Total energy = 3620.2737 kcal/mol (3610.7671 without restraints) Performing minimization step: 1186. Total energy = 3619.9225 kcal/mol (3610.4192 without restraints) Performing minimization step: 1187. Total energy = 3619.5711 kcal/mol (3610.0710 without restraints) Performing minimization step: 1188. Total energy = 3619.2211 kcal/mol (3609.7247 without restraints) Performing minimization step: 1189. Total energy = 3618.8715 kcal/mol (3609.3783 without restraints) Performing minimization step: 1190. Total energy = 3618.5218 kcal/mol (3609.0319 without restraints) Performing minimization step: 1191. Total energy = 3618.1730 kcal/mol (3608.6865 without restraints) Performing minimization step: 1192. Total energy = 3617.8246 kcal/mol (3608.3414 without restraints) Performing minimization step: 1193. Total energy = 3617.4764 kcal/mol (3607.9966 without restraints) Performing minimization step: 1194. Total energy = 3617.1293 kcal/mol (3607.6529 without restraints) Performing minimization step: 1195. Total energy = 3616.7823 kcal/mol (3607.3093 without restraints) Performing minimization step: 1196. Total energy = 3616.4357 kcal/mol (3606.9660 without restraints) Performing minimization step: 1197. Total energy = 3616.0897 kcal/mol (3606.6233 without restraints) Performing minimization step: 1198. Total energy = 3615.7438 kcal/mol (3606.2808 without restraints) Performing minimization step: 1199. Total energy = 3615.3984 kcal/mol (3605.9387 without restraints) Performing minimization step: 1200. Total energy = 3615.0539 kcal/mol (3605.5977 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 3614.7096 kcal/mol (3605.2563 without restraints) Performing minimization step: 1202. Total energy = 3614.3654 kcal/mol (3604.9156 without restraints) Performing minimization step: 1203. Total energy = 3614.0215 kcal/mol (3604.5750 without restraints) Performing minimization step: 1204. Total energy = 3613.6782 kcal/mol (3604.2349 without restraints) Performing minimization step: 1205. Total energy = 3613.3353 kcal/mol (3603.8956 without restraints) Performing minimization step: 1206. Total energy = 3612.9934 kcal/mol (3603.5570 without restraints) Performing minimization step: 1207. Total energy = 3612.6520 kcal/mol (3603.2189 without restraints) Performing minimization step: 1208. Total energy = 3612.3106 kcal/mol (3602.8808 without restraints) Performing minimization step: 1209. Total energy = 3611.9702 kcal/mol (3602.5438 without restraints) Performing minimization step: 1210. Total energy = 3611.6295 kcal/mol (3602.2062 without restraints) Performing minimization step: 1211. Total energy = 3611.2893 kcal/mol (3601.8694 without restraints) Performing minimization step: 1212. Total energy = 3610.9501 kcal/mol (3601.5336 without restraints) Performing minimization step: 1213. Total energy = 3610.6115 kcal/mol (3601.1982 without restraints) Performing minimization step: 1214. Total energy = 3610.2731 kcal/mol (3600.8631 without restraints) Performing minimization step: 1215. Total energy = 3609.9349 kcal/mol (3600.5283 without restraints) Performing minimization step: 1216. Total energy = 3609.5972 kcal/mol (3600.1938 without restraints) Performing minimization step: 1217. Total energy = 3609.2600 kcal/mol (3599.8599 without restraints) Performing minimization step: 1218. Total energy = 3608.9231 kcal/mol (3599.5262 without restraints) Performing minimization step: 1219. Total energy = 3608.5867 kcal/mol (3599.1932 without restraints) Performing minimization step: 1220. Total energy = 3608.2501 kcal/mol (3598.8600 without restraints) Performing minimization step: 1221. Total energy = 3607.9145 kcal/mol (3598.5276 without restraints) Performing minimization step: 1222. Total energy = 3607.5794 kcal/mol (3598.1957 without restraints) Performing minimization step: 1223. Total energy = 3607.2449 kcal/mol (3597.8646 without restraints) Performing minimization step: 1224. Total energy = 3606.9104 kcal/mol (3597.5334 without restraints) Performing minimization step: 1225. Total energy = 3606.5770 kcal/mol (3597.2032 without restraints) Performing minimization step: 1226. Total energy = 3606.2433 kcal/mol (3596.8728 without restraints) Performing minimization step: 1227. Total energy = 3605.9099 kcal/mol (3596.5427 without restraints) Performing minimization step: 1228. Total energy = 3605.5773 kcal/mol (3596.2133 without restraints) Performing minimization step: 1229. Total energy = 3605.2450 kcal/mol (3595.8845 without restraints) Performing minimization step: 1230. Total energy = 3604.9133 kcal/mol (3595.5558 without restraints) Performing minimization step: 1231. Total energy = 3604.5817 kcal/mol (3595.2276 without restraints) Performing minimization step: 1232. Total energy = 3604.2506 kcal/mol (3594.8998 without restraints) Performing minimization step: 1233. Total energy = 3603.9198 kcal/mol (3594.5722 without restraints) Performing minimization step: 1234. Total energy = 3603.5894 kcal/mol (3594.2451 without restraints) Performing minimization step: 1235. Total energy = 3603.2596 kcal/mol (3593.9185 without restraints) Performing minimization step: 1236. Total energy = 3602.9303 kcal/mol (3593.5924 without restraints) Performing minimization step: 1237. Total energy = 3602.6018 kcal/mol (3593.2674 without restraints) Performing minimization step: 1238. Total energy = 3602.2735 kcal/mol (3592.9423 without restraints) Performing minimization step: 1239. Total energy = 3601.9452 kcal/mol (3592.6171 without restraints) Performing minimization step: 1240. Total energy = 3601.6173 kcal/mol (3592.2925 without restraints) Performing minimization step: 1241. Total energy = 3601.2899 kcal/mol (3591.9682 without restraints) Performing minimization step: 1242. Total energy = 3600.9627 kcal/mol (3591.6445 without restraints) Performing minimization step: 1243. Total energy = 3600.6362 kcal/mol (3591.3212 without restraints) Performing minimization step: 1244. Total energy = 3600.3096 kcal/mol (3590.9979 without restraints) Performing minimization step: 1245. Total energy = 3599.9837 kcal/mol (3590.6753 without restraints) Performing minimization step: 1246. Total energy = 3599.6586 kcal/mol (3590.3534 without restraints) Performing minimization step: 1247. Total energy = 3599.3331 kcal/mol (3590.0311 without restraints) Performing minimization step: 1248. Total energy = 3599.0084 kcal/mol (3589.7097 without restraints) Performing minimization step: 1249. Total energy = 3598.6842 kcal/mol (3589.3887 without restraints) Performing minimization step: 1250. Total energy = 3598.3608 kcal/mol (3589.0685 without restraints) Performing minimization step: 1251. Total energy = 3598.0374 kcal/mol (3588.7482 without restraints) Performing minimization step: 1252. Total energy = 3597.7143 kcal/mol (3588.4285 without restraints) Performing minimization step: 1253. Total energy = 3597.3919 kcal/mol (3588.1094 without restraints) Performing minimization step: 1254. Total energy = 3597.0703 kcal/mol (3587.7913 without restraints) Performing minimization step: 1255. Total energy = 3596.7485 kcal/mol (3587.4725 without restraints) Performing minimization step: 1256. Total energy = 3596.4274 kcal/mol (3587.1544 without restraints) Performing minimization step: 1257. Total energy = 3596.1062 kcal/mol (3586.8367 without restraints) Performing minimization step: 1258. Total energy = 3595.7858 kcal/mol (3586.5195 without restraints) Performing minimization step: 1259. Total energy = 3595.4654 kcal/mol (3586.2021 without restraints) Performing minimization step: 1260. Total energy = 3595.1451 kcal/mol (3585.8852 without restraints) Performing minimization step: 1261. Total energy = 3594.8258 kcal/mol (3585.5690 without restraints) Performing minimization step: 1262. Total energy = 3594.5068 kcal/mol (3585.2532 without restraints) Performing minimization step: 1263. Total energy = 3594.1877 kcal/mol (3584.9370 without restraints) Performing minimization step: 1264. Total energy = 3593.8688 kcal/mol (3584.6216 without restraints) Performing minimization step: 1265. Total energy = 3593.5510 kcal/mol (3584.3072 without restraints) Performing minimization step: 1266. Total energy = 3593.2338 kcal/mol (3583.9931 without restraints) Performing minimization step: 1267. Total energy = 3592.9165 kcal/mol (3583.6790 without restraints) Performing minimization step: 1268. Total energy = 3592.5996 kcal/mol (3583.3653 without restraints) Performing minimization step: 1269. Total energy = 3592.2829 kcal/mol (3583.0519 without restraints) Performing minimization step: 1270. Total energy = 3591.9666 kcal/mol (3582.7386 without restraints) Performing minimization step: 1271. Total energy = 3591.6508 kcal/mol (3582.4261 without restraints) Performing minimization step: 1272. Total energy = 3591.3353 kcal/mol (3582.1139 without restraints) Performing minimization step: 1273. Total energy = 3591.0207 kcal/mol (3581.8025 without restraints) Performing minimization step: 1274. Total energy = 3590.7062 kcal/mol (3581.4912 without restraints) Performing minimization step: 1275. Total energy = 3590.3920 kcal/mol (3581.1801 without restraints) Performing minimization step: 1276. Total energy = 3590.0784 kcal/mol (3580.8697 without restraints) Performing minimization step: 1277. Total energy = 3589.7648 kcal/mol (3580.5592 without restraints) Performing minimization step: 1278. Total energy = 3589.4518 kcal/mol (3580.2495 without restraints) Performing minimization step: 1279. Total energy = 3589.1386 kcal/mol (3579.9395 without restraints) Performing minimization step: 1280. Total energy = 3588.8260 kcal/mol (3579.6301 without restraints) Performing minimization step: 1281. Total energy = 3588.5139 kcal/mol (3579.3212 without restraints) Performing minimization step: 1282. Total energy = 3588.2026 kcal/mol (3579.0131 without restraints) Performing minimization step: 1283. Total energy = 3587.8908 kcal/mol (3578.7044 without restraints) Performing minimization step: 1284. Total energy = 3587.5795 kcal/mol (3578.3963 without restraints) Performing minimization step: 1285. Total energy = 3587.2690 kcal/mol (3578.0890 without restraints) Performing minimization step: 1286. Total energy = 3586.9582 kcal/mol (3577.7815 without restraints) Performing minimization step: 1287. Total energy = 3586.6488 kcal/mol (3577.4752 without restraints) Performing minimization step: 1288. Total energy = 3586.3393 kcal/mol (3577.1689 without restraints) Performing minimization step: 1289. Total energy = 3586.0300 kcal/mol (3576.8627 without restraints) Performing minimization step: 1290. Total energy = 3585.7215 kcal/mol (3576.5575 without restraints) Performing minimization step: 1291. Total energy = 3585.4130 kcal/mol (3576.2521 without restraints) Performing minimization step: 1292. Total energy = 3585.1048 kcal/mol (3575.9469 without restraints) Performing minimization step: 1293. Total energy = 3584.7970 kcal/mol (3575.6425 without restraints) Performing minimization step: 1294. Total energy = 3584.4902 kcal/mol (3575.3388 without restraints) Performing minimization step: 1295. Total energy = 3584.1835 kcal/mol (3575.0352 without restraints) Performing minimization step: 1296. Total energy = 3583.8770 kcal/mol (3574.7318 without restraints) Performing minimization step: 1297. Total energy = 3583.5703 kcal/mol (3574.4284 without restraints) Performing minimization step: 1298. Total energy = 3583.2644 kcal/mol (3574.1256 without restraints) Performing minimization step: 1299. Total energy = 3582.9589 kcal/mol (3573.8232 without restraints) Performing minimization step: 1300. Total energy = 3582.6533 kcal/mol (3573.5206 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 3582.3479 kcal/mol (3573.2185 without restraints) Performing minimization step: 1302. Total energy = 3582.0431 kcal/mol (3572.9168 without restraints) Performing minimization step: 1303. Total energy = 3581.7390 kcal/mol (3572.6159 without restraints) Performing minimization step: 1304. Total energy = 3581.4351 kcal/mol (3572.3151 without restraints) Performing minimization step: 1305. Total energy = 3581.1310 kcal/mol (3572.0140 without restraints) Performing minimization step: 1306. Total energy = 3580.8275 kcal/mol (3571.7140 without restraints) Performing minimization step: 1307. Total energy = 3580.5247 kcal/mol (3571.4144 without restraints) Performing minimization step: 1308. Total energy = 3580.2219 kcal/mol (3571.1145 without restraints) Performing minimization step: 1309. Total energy = 3579.9194 kcal/mol (3570.8152 without restraints) Performing minimization step: 1310. Total energy = 3579.6172 kcal/mol (3570.5161 without restraints) Performing minimization step: 1311. Total energy = 3579.3151 kcal/mol (3570.2171 without restraints) Performing minimization step: 1312. Total energy = 3579.0135 kcal/mol (3569.9186 without restraints) Performing minimization step: 1313. Total energy = 3578.7127 kcal/mol (3569.6209 without restraints) Performing minimization step: 1314. Total energy = 3578.4118 kcal/mol (3569.3232 without restraints) Performing minimization step: 1315. Total energy = 3578.1122 kcal/mol (3569.0268 without restraints) Performing minimization step: 1316. Total energy = 3577.8123 kcal/mol (3568.7300 without restraints) Performing minimization step: 1317. Total energy = 3577.5117 kcal/mol (3568.4325 without restraints) Performing minimization step: 1318. Total energy = 3577.2123 kcal/mol (3568.1362 without restraints) Performing minimization step: 1319. Total energy = 3576.9133 kcal/mol (3567.8403 without restraints) Performing minimization step: 1320. Total energy = 3576.6146 kcal/mol (3567.5447 without restraints) Performing minimization step: 1321. Total energy = 3576.3160 kcal/mol (3567.2492 without restraints) Performing minimization step: 1322. Total energy = 3576.0173 kcal/mol (3566.9537 without restraints) Performing minimization step: 1323. Total energy = 3575.7195 kcal/mol (3566.6590 without restraints) Performing minimization step: 1324. Total energy = 3575.4221 kcal/mol (3566.3647 without restraints) Performing minimization step: 1325. Total energy = 3575.1252 kcal/mol (3566.0709 without restraints) Performing minimization step: 1326. Total energy = 3574.8285 kcal/mol (3565.7773 without restraints) Performing minimization step: 1327. Total energy = 3574.5311 kcal/mol (3565.4830 without restraints) Performing minimization step: 1328. Total energy = 3574.2355 kcal/mol (3565.1905 without restraints) Performing minimization step: 1329. Total energy = 3573.9396 kcal/mol (3564.8976 without restraints) Performing minimization step: 1330. Total energy = 3573.6439 kcal/mol (3564.6052 without restraints) Performing minimization step: 1331. Total energy = 3573.3487 kcal/mol (3564.3131 without restraints) Performing minimization step: 1332. Total energy = 3573.0538 kcal/mol (3564.0212 without restraints) Performing minimization step: 1333. Total energy = 3572.7593 kcal/mol (3563.7297 without restraints) Performing minimization step: 1334. Total energy = 3572.4647 kcal/mol (3563.4383 without restraints) Performing minimization step: 1335. Total energy = 3572.1705 kcal/mol (3563.1472 without restraints) Performing minimization step: 1336. Total energy = 3571.8770 kcal/mol (3562.8568 without restraints) Performing minimization step: 1337. Total energy = 3571.5836 kcal/mol (3562.5665 without restraints) Performing minimization step: 1338. Total energy = 3571.2905 kcal/mol (3562.2764 without restraints) Performing minimization step: 1339. Total energy = 3570.9972 kcal/mol (3561.9863 without restraints) Performing minimization step: 1340. Total energy = 3570.7046 kcal/mol (3561.6967 without restraints) Performing minimization step: 1341. Total energy = 3570.4126 kcal/mol (3561.4078 without restraints) Performing minimization step: 1342. Total energy = 3570.1207 kcal/mol (3561.1189 without restraints) Performing minimization step: 1343. Total energy = 3569.8292 kcal/mol (3560.8307 without restraints) Performing minimization step: 1344. Total energy = 3569.5376 kcal/mol (3560.5421 without restraints) Performing minimization step: 1345. Total energy = 3569.2466 kcal/mol (3560.2541 without restraints) Performing minimization step: 1346. Total energy = 3568.9559 kcal/mol (3559.9665 without restraints) Performing minimization step: 1347. Total energy = 3568.6653 kcal/mol (3559.6789 without restraints) Performing minimization step: 1348. Total energy = 3568.3751 kcal/mol (3559.3919 without restraints) Performing minimization step: 1349. Total energy = 3568.0854 kcal/mol (3559.1053 without restraints) Performing minimization step: 1350. Total energy = 3567.7963 kcal/mol (3558.8191 without restraints) Performing minimization step: 1351. Total energy = 3567.5068 kcal/mol (3558.5329 without restraints) Performing minimization step: 1352. Total energy = 3567.2179 kcal/mol (3558.2469 without restraints) Performing minimization step: 1353. Total energy = 3566.9297 kcal/mol (3557.9618 without restraints) Performing minimization step: 1354. Total energy = 3566.6414 kcal/mol (3557.6764 without restraints) Performing minimization step: 1355. Total energy = 3566.3532 kcal/mol (3557.3915 without restraints) Performing minimization step: 1356. Total energy = 3566.0655 kcal/mol (3557.1067 without restraints) Performing minimization step: 1357. Total energy = 3565.7781 kcal/mol (3556.8225 without restraints) Performing minimization step: 1358. Total energy = 3565.4912 kcal/mol (3556.5386 without restraints) Performing minimization step: 1359. Total energy = 3565.2036 kcal/mol (3556.2540 without restraints) Performing minimization step: 1360. Total energy = 3564.9173 kcal/mol (3555.9708 without restraints) Performing minimization step: 1361. Total energy = 3564.6305 kcal/mol (3555.6870 without restraints) Performing minimization step: 1362. Total energy = 3564.3446 kcal/mol (3555.4042 without restraints) Performing minimization step: 1363. Total energy = 3564.0589 kcal/mol (3555.1214 without restraints) Performing minimization step: 1364. Total energy = 3563.7730 kcal/mol (3554.8387 without restraints) Performing minimization step: 1365. Total energy = 3563.4880 kcal/mol (3554.5567 without restraints) Performing minimization step: 1366. Total energy = 3563.2028 kcal/mol (3554.2745 without restraints) Performing minimization step: 1367. Total energy = 3562.9179 kcal/mol (3553.9927 without restraints) Performing minimization step: 1368. Total energy = 3562.6337 kcal/mol (3553.7115 without restraints) Performing minimization step: 1369. Total energy = 3562.3501 kcal/mol (3553.4310 without restraints) Performing minimization step: 1370. Total energy = 3562.0666 kcal/mol (3553.1505 without restraints) Performing minimization step: 1371. Total energy = 3561.7831 kcal/mol (3552.8700 without restraints) Performing minimization step: 1372. Total energy = 3561.4996 kcal/mol (3552.5895 without restraints) Performing minimization step: 1373. Total energy = 3561.2164 kcal/mol (3552.3094 without restraints) Performing minimization step: 1374. Total energy = 3560.9330 kcal/mol (3552.0290 without restraints) Performing minimization step: 1375. Total energy = 3560.6506 kcal/mol (3551.7496 without restraints) Performing minimization step: 1376. Total energy = 3560.3682 kcal/mol (3551.4702 without restraints) Performing minimization step: 1377. Total energy = 3560.0865 kcal/mol (3551.1916 without restraints) Performing minimization step: 1378. Total energy = 3559.8041 kcal/mol (3550.9121 without restraints) Performing minimization step: 1379. Total energy = 3559.5231 kcal/mol (3550.6342 without restraints) Performing minimization step: 1380. Total energy = 3559.2426 kcal/mol (3550.3568 without restraints) Performing minimization step: 1381. Total energy = 3558.9621 kcal/mol (3550.0795 without restraints) Performing minimization step: 1382. Total energy = 3558.6819 kcal/mol (3549.8022 without restraints) Performing minimization step: 1383. Total energy = 3558.4020 kcal/mol (3549.5252 without restraints) Performing minimization step: 1384. Total energy = 3558.1225 kcal/mol (3549.2487 without restraints) Performing minimization step: 1385. Total energy = 3557.8426 kcal/mol (3548.9719 without restraints) Performing minimization step: 1386. Total energy = 3557.5633 kcal/mol (3548.6955 without restraints) Performing minimization step: 1387. Total energy = 3557.2844 kcal/mol (3548.4197 without restraints) Performing minimization step: 1388. Total energy = 3557.0047 kcal/mol (3548.1428 without restraints) Performing minimization step: 1389. Total energy = 3556.7262 kcal/mol (3547.8674 without restraints) Performing minimization step: 1390. Total energy = 3556.4476 kcal/mol (3547.5918 without restraints) Performing minimization step: 1391. Total energy = 3556.1697 kcal/mol (3547.3169 without restraints) Performing minimization step: 1392. Total energy = 3555.8921 kcal/mol (3547.0424 without restraints) Performing minimization step: 1393. Total energy = 3555.6146 kcal/mol (3546.7679 without restraints) Performing minimization step: 1394. Total energy = 3555.3378 kcal/mol (3546.4940 without restraints) Performing minimization step: 1395. Total energy = 3555.0611 kcal/mol (3546.2206 without restraints) Performing minimization step: 1396. Total energy = 3554.7848 kcal/mol (3545.9470 without restraints) Performing minimization step: 1397. Total energy = 3554.5085 kcal/mol (3545.6737 without restraints) Performing minimization step: 1398. Total energy = 3554.2326 kcal/mol (3545.4008 without restraints) Performing minimization step: 1399. Total energy = 3553.9567 kcal/mol (3545.1279 without restraints) Performing minimization step: 1400. Total energy = 3553.6814 kcal/mol (3544.8555 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 3553.4064 kcal/mol (3544.5835 without restraints) Performing minimization step: 1402. Total energy = 3553.1312 kcal/mol (3544.3113 without restraints) Performing minimization step: 1403. Total energy = 3552.8566 kcal/mol (3544.0398 without restraints) Performing minimization step: 1404. Total energy = 3552.5821 kcal/mol (3543.7682 without restraints) Performing minimization step: 1405. Total energy = 3552.3082 kcal/mol (3543.4973 without restraints) Performing minimization step: 1406. Total energy = 3552.0342 kcal/mol (3543.2262 without restraints) Performing minimization step: 1407. Total energy = 3551.7605 kcal/mol (3542.9555 without restraints) Performing minimization step: 1408. Total energy = 3551.4872 kcal/mol (3542.6852 without restraints) Performing minimization step: 1409. Total energy = 3551.2144 kcal/mol (3542.4153 without restraints) Performing minimization step: 1410. Total energy = 3550.9414 kcal/mol (3542.1454 without restraints) Performing minimization step: 1411. Total energy = 3550.6688 kcal/mol (3541.8757 without restraints) Performing minimization step: 1412. Total energy = 3550.3967 kcal/mol (3541.6066 without restraints) Performing minimization step: 1413. Total energy = 3550.1246 kcal/mol (3541.3374 without restraints) Performing minimization step: 1414. Total energy = 3549.8524 kcal/mol (3541.0682 without restraints) Performing minimization step: 1415. Total energy = 3549.5809 kcal/mol (3540.7996 without restraints) Performing minimization step: 1416. Total energy = 3549.3092 kcal/mol (3540.5308 without restraints) Performing minimization step: 1417. Total energy = 3549.0374 kcal/mol (3540.2620 without restraints) Performing minimization step: 1418. Total energy = 3548.7664 kcal/mol (3539.9940 without restraints) Performing minimization step: 1419. Total energy = 3548.4955 kcal/mol (3539.7261 without restraints) Performing minimization step: 1420. Total energy = 3548.2261 kcal/mol (3539.4598 without restraints) Performing minimization step: 1421. Total energy = 3547.9559 kcal/mol (3539.1925 without restraints) Performing minimization step: 1422. Total energy = 3547.6861 kcal/mol (3538.9256 without restraints) Performing minimization step: 1423. Total energy = 3547.4166 kcal/mol (3538.6590 without restraints) Performing minimization step: 1424. Total energy = 3547.1468 kcal/mol (3538.3923 without restraints) Performing minimization step: 1425. Total energy = 3546.8776 kcal/mol (3538.1259 without restraints) Performing minimization step: 1426. Total energy = 3546.6087 kcal/mol (3537.8600 without restraints) Performing minimization step: 1427. Total energy = 3546.3400 kcal/mol (3537.5943 without restraints) Performing minimization step: 1428. Total energy = 3546.0709 kcal/mol (3537.3279 without restraints) Performing minimization step: 1429. Total energy = 3545.8024 kcal/mol (3537.0625 without restraints) Performing minimization step: 1430. Total energy = 3545.5344 kcal/mol (3536.7974 without restraints) Performing minimization step: 1431. Total energy = 3545.2674 kcal/mol (3536.5336 without restraints) Performing minimization step: 1432. Total energy = 3545.0004 kcal/mol (3536.2693 without restraints) Performing minimization step: 1433. Total energy = 3544.7333 kcal/mol (3536.0049 without restraints) Performing minimization step: 1434. Total energy = 3544.4663 kcal/mol (3535.7410 without restraints) Performing minimization step: 1435. Total energy = 3544.1994 kcal/mol (3535.4770 without restraints) Performing minimization step: 1436. Total energy = 3543.9331 kcal/mol (3535.2138 without restraints) Performing minimization step: 1437. Total energy = 3543.6666 kcal/mol (3534.9502 without restraints) Performing minimization step: 1438. Total energy = 3543.4007 kcal/mol (3534.6871 without restraints) Performing minimization step: 1439. Total energy = 3543.1348 kcal/mol (3534.4242 without restraints) Performing minimization step: 1440. Total energy = 3542.8693 kcal/mol (3534.1617 without restraints) Performing minimization step: 1441. Total energy = 3542.6044 kcal/mol (3533.8996 without restraints) Performing minimization step: 1442. Total energy = 3542.3395 kcal/mol (3533.6376 without restraints) Performing minimization step: 1443. Total energy = 3542.0749 kcal/mol (3533.3760 without restraints) Performing minimization step: 1444. Total energy = 3541.8102 kcal/mol (3533.1141 without restraints) Performing minimization step: 1445. Total energy = 3541.5456 kcal/mol (3532.8525 without restraints) Performing minimization step: 1446. Total energy = 3541.2820 kcal/mol (3532.5920 without restraints) Performing minimization step: 1447. Total energy = 3541.0186 kcal/mol (3532.3314 without restraints) Performing minimization step: 1448. Total energy = 3540.7543 kcal/mol (3532.0700 without restraints) Performing minimization step: 1449. Total energy = 3540.4903 kcal/mol (3531.8089 without restraints) Performing minimization step: 1450. Total energy = 3540.2271 kcal/mol (3531.5486 without restraints) Performing minimization step: 1451. Total energy = 3539.9641 kcal/mol (3531.2885 without restraints) Performing minimization step: 1452. Total energy = 3539.7016 kcal/mol (3531.0288 without restraints) Performing minimization step: 1453. Total energy = 3539.4395 kcal/mol (3530.7697 without restraints) Performing minimization step: 1454. Total energy = 3539.1771 kcal/mol (3530.5102 without restraints) Performing minimization step: 1455. Total energy = 3538.9155 kcal/mol (3530.2515 without restraints) Performing minimization step: 1456. Total energy = 3538.6536 kcal/mol (3529.9925 without restraints) Performing minimization step: 1457. Total energy = 3538.3920 kcal/mol (3529.7338 without restraints) Performing minimization step: 1458. Total energy = 3538.1310 kcal/mol (3529.4757 without restraints) Performing minimization step: 1459. Total energy = 3537.8697 kcal/mol (3529.2174 without restraints) Performing minimization step: 1460. Total energy = 3537.6088 kcal/mol (3528.9593 without restraints) Performing minimization step: 1461. Total energy = 3537.3489 kcal/mol (3528.7024 without restraints) Performing minimization step: 1462. Total energy = 3537.0883 kcal/mol (3528.4447 without restraints) Performing minimization step: 1463. Total energy = 3536.8281 kcal/mol (3528.1873 without restraints) Performing minimization step: 1464. Total energy = 3536.5683 kcal/mol (3527.9304 without restraints) Performing minimization step: 1465. Total energy = 3536.3090 kcal/mol (3527.6739 without restraints) Performing minimization step: 1466. Total energy = 3536.0494 kcal/mol (3527.4172 without restraints) Performing minimization step: 1467. Total energy = 3535.7902 kcal/mol (3527.1609 without restraints) Performing minimization step: 1468. Total energy = 3535.5314 kcal/mol (3526.9050 without restraints) Performing minimization step: 1469. Total energy = 3535.2728 kcal/mol (3526.6493 without restraints) Performing minimization step: 1470. Total energy = 3535.0143 kcal/mol (3526.3937 without restraints) Performing minimization step: 1471. Total energy = 3534.7563 kcal/mol (3526.1385 without restraints) Performing minimization step: 1472. Total energy = 3534.4975 kcal/mol (3525.8826 without restraints) Performing minimization step: 1473. Total energy = 3534.2393 kcal/mol (3525.6273 without restraints) Performing minimization step: 1474. Total energy = 3533.9821 kcal/mol (3525.3729 without restraints) Performing minimization step: 1475. Total energy = 3533.7243 kcal/mol (3525.1181 without restraints) Performing minimization step: 1476. Total energy = 3533.4674 kcal/mol (3524.8640 without restraints) Performing minimization step: 1477. Total energy = 3533.2115 kcal/mol (3524.6110 without restraints) Performing minimization step: 1478. Total energy = 3532.9544 kcal/mol (3524.3568 without restraints) Performing minimization step: 1479. Total energy = 3532.6975 kcal/mol (3524.1027 without restraints) Performing minimization step: 1480. Total energy = 3532.4411 kcal/mol (3523.8491 without restraints) Performing minimization step: 1481. Total energy = 3532.1849 kcal/mol (3523.5958 without restraints) Performing minimization step: 1482. Total energy = 3531.9290 kcal/mol (3523.3426 without restraints) Performing minimization step: 1483. Total energy = 3531.6731 kcal/mol (3523.0897 without restraints) Performing minimization step: 1484. Total energy = 3531.4174 kcal/mol (3522.8368 without restraints) Performing minimization step: 1485. Total energy = 3531.1623 kcal/mol (3522.5847 without restraints) Performing minimization step: 1486. Total energy = 3530.9074 kcal/mol (3522.3326 without restraints) Performing minimization step: 1487. Total energy = 3530.6525 kcal/mol (3522.0805 without restraints) Performing minimization step: 1488. Total energy = 3530.3972 kcal/mol (3521.8281 without restraints) Performing minimization step: 1489. Total energy = 3530.1426 kcal/mol (3521.5761 without restraints) Performing minimization step: 1490. Total energy = 3529.8880 kcal/mol (3521.3246 without restraints) Performing minimization step: 1491. Total energy = 3529.6343 kcal/mol (3521.0738 without restraints) Performing minimization step: 1492. Total energy = 3529.3804 kcal/mol (3520.8227 without restraints) Performing minimization step: 1493. Total energy = 3529.1269 kcal/mol (3520.5720 without restraints) Performing minimization step: 1494. Total energy = 3528.8737 kcal/mol (3520.3217 without restraints) Performing minimization step: 1495. Total energy = 3528.6202 kcal/mol (3520.0710 without restraints) Performing minimization step: 1496. Total energy = 3528.3675 kcal/mol (3519.8213 without restraints) Performing minimization step: 1497. Total energy = 3528.1143 kcal/mol (3519.5708 without restraints) Performing minimization step: 1498. Total energy = 3527.8619 kcal/mol (3519.3212 without restraints) Performing minimization step: 1499. Total energy = 3527.6084 kcal/mol (3519.0705 without restraints) Performing minimization step: 1500. Total energy = 3527.3560 kcal/mol (3518.8210 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 3527.1037 kcal/mol (3518.5715 without restraints) Performing minimization step: 1502. Total energy = 3526.8518 kcal/mol (3518.3223 without restraints) Performing minimization step: 1503. Total energy = 3526.6000 kcal/mol (3518.0734 without restraints) Performing minimization step: 1504. Total energy = 3526.3485 kcal/mol (3517.8248 without restraints) Performing minimization step: 1505. Total energy = 3526.0976 kcal/mol (3517.5768 without restraints) Performing minimization step: 1506. Total energy = 3525.8469 kcal/mol (3517.3289 without restraints) Performing minimization step: 1507. Total energy = 3525.5964 kcal/mol (3517.0813 without restraints) Performing minimization step: 1508. Total energy = 3525.3461 kcal/mol (3516.8338 without restraints) Performing minimization step: 1509. Total energy = 3525.0959 kcal/mol (3516.5863 without restraints) Performing minimization step: 1510. Total energy = 3524.8459 kcal/mol (3516.3391 without restraints) Performing minimization step: 1511. Total energy = 3524.5963 kcal/mol (3516.0924 without restraints) Performing minimization step: 1512. Total energy = 3524.3468 kcal/mol (3515.8457 without restraints) Performing minimization step: 1513. Total energy = 3524.0975 kcal/mol (3515.5992 without restraints) Performing minimization step: 1514. Total energy = 3523.8483 kcal/mol (3515.3532 without restraints) Performing minimization step: 1515. Total energy = 3523.5997 kcal/mol (3515.1071 without restraints) Performing minimization step: 1516. Total energy = 3523.3506 kcal/mol (3514.8608 without restraints) Performing minimization step: 1517. Total energy = 3523.1020 kcal/mol (3514.6147 without restraints) Performing minimization step: 1518. Total energy = 3522.8532 kcal/mol (3514.3690 without restraints) Performing minimization step: 1519. Total energy = 3522.6048 kcal/mol (3514.1234 without restraints) Performing minimization step: 1520. Total energy = 3522.3566 kcal/mol (3513.8780 without restraints) Performing minimization step: 1521. Total energy = 3522.1089 kcal/mol (3513.6331 without restraints) Performing minimization step: 1522. Total energy = 3521.8617 kcal/mol (3513.3887 without restraints) Performing minimization step: 1523. Total energy = 3521.6146 kcal/mol (3513.1444 without restraints) Performing minimization step: 1524. Total energy = 3521.3675 kcal/mol (3512.9001 without restraints) Performing minimization step: 1525. Total energy = 3521.1203 kcal/mol (3512.6557 without restraints) Performing minimization step: 1526. Total energy = 3520.8732 kcal/mol (3512.4113 without restraints) Performing minimization step: 1527. Total energy = 3520.6267 kcal/mol (3512.1677 without restraints) Performing minimization step: 1528. Total energy = 3520.3802 kcal/mol (3511.9238 without restraints) Performing minimization step: 1529. Total energy = 3520.1341 kcal/mol (3511.6806 without restraints) Performing minimization step: 1530. Total energy = 3519.8885 kcal/mol (3511.4378 without restraints) Performing minimization step: 1531. Total energy = 3519.6427 kcal/mol (3511.1948 without restraints) Performing minimization step: 1532. Total energy = 3519.3971 kcal/mol (3510.9521 without restraints) Performing minimization step: 1533. Total energy = 3519.1517 kcal/mol (3510.7094 without restraints) Performing minimization step: 1534. Total energy = 3518.9067 kcal/mol (3510.4672 without restraints) Performing minimization step: 1535. Total energy = 3518.6618 kcal/mol (3510.2249 without restraints) Performing minimization step: 1536. Total energy = 3518.4168 kcal/mol (3509.9829 without restraints) Performing minimization step: 1537. Total energy = 3518.1721 kcal/mol (3509.7408 without restraints) Performing minimization step: 1538. Total energy = 3517.9271 kcal/mol (3509.4987 without restraints) Performing minimization step: 1539. Total energy = 3517.6828 kcal/mol (3509.2571 without restraints) Performing minimization step: 1540. Total energy = 3517.4388 kcal/mol (3509.0160 without restraints) Performing minimization step: 1541. Total energy = 3517.1951 kcal/mol (3508.7750 without restraints) Performing minimization step: 1542. Total energy = 3516.9518 kcal/mol (3508.5345 without restraints) Performing minimization step: 1543. Total energy = 3516.7082 kcal/mol (3508.2938 without restraints) Performing minimization step: 1544. Total energy = 3516.4650 kcal/mol (3508.0533 without restraints) Performing minimization step: 1545. Total energy = 3516.2219 kcal/mol (3507.8129 without restraints) Performing minimization step: 1546. Total energy = 3515.9791 kcal/mol (3507.5730 without restraints) Performing minimization step: 1547. Total energy = 3515.7364 kcal/mol (3507.3328 without restraints) Performing minimization step: 1548. Total energy = 3515.4940 kcal/mol (3507.0933 without restraints) Performing minimization step: 1549. Total energy = 3515.2513 kcal/mol (3506.8533 without restraints) Performing minimization step: 1550. Total energy = 3515.0091 kcal/mol (3506.6139 without restraints) Performing minimization step: 1551. Total energy = 3514.7670 kcal/mol (3506.3745 without restraints) Performing minimization step: 1552. Total energy = 3514.5253 kcal/mol (3506.1356 without restraints) Performing minimization step: 1553. Total energy = 3514.2834 kcal/mol (3505.8965 without restraints) Performing minimization step: 1554. Total energy = 3514.0414 kcal/mol (3505.6572 without restraints) Performing minimization step: 1555. Total energy = 3513.8000 kcal/mol (3505.4186 without restraints) Performing minimization step: 1556. Total energy = 3513.5592 kcal/mol (3505.1804 without restraints) Performing minimization step: 1557. Total energy = 3513.3181 kcal/mol (3504.9422 without restraints) Performing minimization step: 1558. Total energy = 3513.0774 kcal/mol (3504.7043 without restraints) Performing minimization step: 1559. Total energy = 3512.8367 kcal/mol (3504.4663 without restraints) Performing minimization step: 1560. Total energy = 3512.5965 kcal/mol (3504.2288 without restraints) Performing minimization step: 1561. Total energy = 3512.3563 kcal/mol (3503.9914 without restraints) Performing minimization step: 1562. Total energy = 3512.1159 kcal/mol (3503.7536 without restraints) Performing minimization step: 1563. Total energy = 3511.8760 kcal/mol (3503.5166 without restraints) Performing minimization step: 1564. Total energy = 3511.6360 kcal/mol (3503.2793 without restraints) Performing minimization step: 1565. Total energy = 3511.3965 kcal/mol (3503.0425 without restraints) Performing minimization step: 1566. Total energy = 3511.1567 kcal/mol (3502.8054 without restraints) Performing minimization step: 1567. Total energy = 3510.9171 kcal/mol (3502.5687 without restraints) Performing minimization step: 1568. Total energy = 3510.6783 kcal/mol (3502.3324 without restraints) Performing minimization step: 1569. Total energy = 3510.4390 kcal/mol (3502.0960 without restraints) Performing minimization step: 1570. Total energy = 3510.2005 kcal/mol (3501.8603 without restraints) Performing minimization step: 1571. Total energy = 3509.9623 kcal/mol (3501.6249 without restraints) Performing minimization step: 1572. Total energy = 3509.7236 kcal/mol (3501.3887 without restraints) Performing minimization step: 1573. Total energy = 3509.4855 kcal/mol (3501.1534 without restraints) Performing minimization step: 1574. Total energy = 3509.2484 kcal/mol (3500.9190 without restraints) Performing minimization step: 1575. Total energy = 3509.0107 kcal/mol (3500.6839 without restraints) Performing minimization step: 1576. Total energy = 3508.7730 kcal/mol (3500.4491 without restraints) Performing minimization step: 1577. Total energy = 3508.5355 kcal/mol (3500.2144 without restraints) Performing minimization step: 1578. Total energy = 3508.2979 kcal/mol (3499.9795 without restraints) Performing minimization step: 1579. Total energy = 3508.0605 kcal/mol (3499.7448 without restraints) Performing minimization step: 1580. Total energy = 3507.8241 kcal/mol (3499.5111 without restraints) Performing minimization step: 1581. Total energy = 3507.5875 kcal/mol (3499.2773 without restraints) Performing minimization step: 1582. Total energy = 3507.3511 kcal/mol (3499.0434 without restraints) Performing minimization step: 1583. Total energy = 3507.1145 kcal/mol (3498.8096 without restraints) Performing minimization step: 1584. Total energy = 3506.8781 kcal/mol (3498.5759 without restraints) Performing minimization step: 1585. Total energy = 3506.6424 kcal/mol (3498.3428 without restraints) Performing minimization step: 1586. Total energy = 3506.4062 kcal/mol (3498.1095 without restraints) Performing minimization step: 1587. Total energy = 3506.1703 kcal/mol (3497.8763 without restraints) Performing minimization step: 1588. Total energy = 3505.9350 kcal/mol (3497.6436 without restraints) Performing minimization step: 1589. Total energy = 3505.6998 kcal/mol (3497.4112 without restraints) Performing minimization step: 1590. Total energy = 3505.4651 kcal/mol (3497.1792 without restraints) Performing minimization step: 1591. Total energy = 3505.2305 kcal/mol (3496.9473 without restraints) Performing minimization step: 1592. Total energy = 3504.9957 kcal/mol (3496.7152 without restraints) Performing minimization step: 1593. Total energy = 3504.7612 kcal/mol (3496.4833 without restraints) Performing minimization step: 1594. Total energy = 3504.5269 kcal/mol (3496.2517 without restraints) Performing minimization step: 1595. Total energy = 3504.2927 kcal/mol (3496.0203 without restraints) Performing minimization step: 1596. Total energy = 3504.0588 kcal/mol (3495.7890 without restraints) Performing minimization step: 1597. Total energy = 3503.8246 kcal/mol (3495.5575 without restraints) Performing minimization step: 1598. Total energy = 3503.5905 kcal/mol (3495.3262 without restraints) Performing minimization step: 1599. Total energy = 3503.3573 kcal/mol (3495.0957 without restraints) Performing minimization step: 1600. Total energy = 3503.1241 kcal/mol (3494.8651 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 3502.8913 kcal/mol (3494.6350 without restraints) Performing minimization step: 1602. Total energy = 3502.6586 kcal/mol (3494.4050 without restraints) Performing minimization step: 1603. Total energy = 3502.4259 kcal/mol (3494.1750 without restraints) Performing minimization step: 1604. Total energy = 3502.1933 kcal/mol (3493.9452 without restraints) Performing minimization step: 1605. Total energy = 3501.9610 kcal/mol (3493.7154 without restraints) Performing minimization step: 1606. Total energy = 3501.7289 kcal/mol (3493.4861 without restraints) Performing minimization step: 1607. Total energy = 3501.4969 kcal/mol (3493.2566 without restraints) Performing minimization step: 1608. Total energy = 3501.2646 kcal/mol (3493.0271 without restraints) Performing minimization step: 1609. Total energy = 3501.0329 kcal/mol (3492.7981 without restraints) Performing minimization step: 1610. Total energy = 3500.8015 kcal/mol (3492.5694 without restraints) Performing minimization step: 1611. Total energy = 3500.5698 kcal/mol (3492.3404 without restraints) Performing minimization step: 1612. Total energy = 3500.3384 kcal/mol (3492.1116 without restraints) Performing minimization step: 1613. Total energy = 3500.1070 kcal/mol (3491.8829 without restraints) Performing minimization step: 1614. Total energy = 3499.8763 kcal/mol (3491.6548 without restraints) Performing minimization step: 1615. Total energy = 3499.6449 kcal/mol (3491.4261 without restraints) Performing minimization step: 1616. Total energy = 3499.4147 kcal/mol (3491.1986 without restraints) Performing minimization step: 1617. Total energy = 3499.1843 kcal/mol (3490.9709 without restraints) Performing minimization step: 1618. Total energy = 3498.9543 kcal/mol (3490.7435 without restraints) Performing minimization step: 1619. Total energy = 3498.7242 kcal/mol (3490.5160 without restraints) Performing minimization step: 1620. Total energy = 3498.4942 kcal/mol (3490.2888 without restraints) Performing minimization step: 1621. Total energy = 3498.2645 kcal/mol (3490.0617 without restraints) Performing minimization step: 1622. Total energy = 3498.0349 kcal/mol (3489.8348 without restraints) Performing minimization step: 1623. Total energy = 3497.8051 kcal/mol (3489.6075 without restraints) Performing minimization step: 1624. Total energy = 3497.5753 kcal/mol (3489.3805 without restraints) Performing minimization step: 1625. Total energy = 3497.3460 kcal/mol (3489.1539 without restraints) Performing minimization step: 1626. Total energy = 3497.1165 kcal/mol (3488.9269 without restraints) Performing minimization step: 1627. Total energy = 3496.8874 kcal/mol (3488.7005 without restraints) Performing minimization step: 1628. Total energy = 3496.6588 kcal/mol (3488.4746 without restraints) Performing minimization step: 1629. Total energy = 3496.4300 kcal/mol (3488.2483 without restraints) Performing minimization step: 1630. Total energy = 3496.2017 kcal/mol (3488.0228 without restraints) Performing minimization step: 1631. Total energy = 3495.9732 kcal/mol (3487.7970 without restraints) Performing minimization step: 1632. Total energy = 3495.7453 kcal/mol (3487.5716 without restraints) Performing minimization step: 1633. Total energy = 3495.5176 kcal/mol (3487.3466 without restraints) Performing minimization step: 1634. Total energy = 3495.2895 kcal/mol (3487.1212 without restraints) Performing minimization step: 1635. Total energy = 3495.0618 kcal/mol (3486.8961 without restraints) Performing minimization step: 1636. Total energy = 3494.8348 kcal/mol (3486.6718 without restraints) Performing minimization step: 1637. Total energy = 3494.6078 kcal/mol (3486.4474 without restraints) Performing minimization step: 1638. Total energy = 3494.3807 kcal/mol (3486.2229 without restraints) Performing minimization step: 1639. Total energy = 3494.1529 kcal/mol (3485.9978 without restraints) Performing minimization step: 1640. Total energy = 3493.9258 kcal/mol (3485.7730 without restraints) Performing minimization step: 1641. Total energy = 3493.6986 kcal/mol (3485.5488 without restraints) Performing minimization step: 1642. Total energy = 3493.4723 kcal/mol (3485.3249 without restraints) Performing minimization step: 1643. Total energy = 3493.2459 kcal/mol (3485.1013 without restraints) Performing minimization step: 1644. Total energy = 3493.0200 kcal/mol (3484.8780 without restraints) Performing minimization step: 1645. Total energy = 3492.7944 kcal/mol (3484.6550 without restraints) Performing minimization step: 1646. Total energy = 3492.5684 kcal/mol (3484.4314 without restraints) Performing minimization step: 1647. Total energy = 3492.3423 kcal/mol (3484.2082 without restraints) Performing minimization step: 1648. Total energy = 3492.1168 kcal/mol (3483.9853 without restraints) Performing minimization step: 1649. Total energy = 3491.8914 kcal/mol (3483.7625 without restraints) Performing minimization step: 1650. Total energy = 3491.6661 kcal/mol (3483.5399 without restraints) Performing minimization step: 1651. Total energy = 3491.4413 kcal/mol (3483.3176 without restraints) Performing minimization step: 1652. Total energy = 3491.2165 kcal/mol (3483.0954 without restraints) Performing minimization step: 1653. Total energy = 3490.9917 kcal/mol (3482.8733 without restraints) Performing minimization step: 1654. Total energy = 3490.7671 kcal/mol (3482.6513 without restraints) Performing minimization step: 1655. Total energy = 3490.5426 kcal/mol (3482.4293 without restraints) Performing minimization step: 1656. Total energy = 3490.3185 kcal/mol (3482.2079 without restraints) Performing minimization step: 1657. Total energy = 3490.0943 kcal/mol (3481.9864 without restraints) Performing minimization step: 1658. Total energy = 3489.8703 kcal/mol (3481.7651 without restraints) Performing minimization step: 1659. Total energy = 3489.6468 kcal/mol (3481.5441 without restraints) Performing minimization step: 1660. Total energy = 3489.4238 kcal/mol (3481.3238 without restraints) Performing minimization step: 1661. Total energy = 3489.2003 kcal/mol (3481.1026 without restraints) Performing minimization step: 1662. Total energy = 3488.9768 kcal/mol (3480.8819 without restraints) Performing minimization step: 1663. Total energy = 3488.7540 kcal/mol (3480.6616 without restraints) Performing minimization step: 1664. Total energy = 3488.5303 kcal/mol (3480.4405 without restraints) Performing minimization step: 1665. Total energy = 3488.3069 kcal/mol (3480.2197 without restraints) Performing minimization step: 1666. Total energy = 3488.0840 kcal/mol (3479.9995 without restraints) Performing minimization step: 1667. Total energy = 3487.8609 kcal/mol (3479.7790 without restraints) Performing minimization step: 1668. Total energy = 3487.6380 kcal/mol (3479.5586 without restraints) Performing minimization step: 1669. Total energy = 3487.4156 kcal/mol (3479.3388 without restraints) Performing minimization step: 1670. Total energy = 3487.1934 kcal/mol (3479.1194 without restraints) Performing minimization step: 1671. Total energy = 3486.9715 kcal/mol (3478.8999 without restraints) Performing minimization step: 1672. Total energy = 3486.7496 kcal/mol (3478.6806 without restraints) Performing minimization step: 1673. Total energy = 3486.5273 kcal/mol (3478.4609 without restraints) Performing minimization step: 1674. Total energy = 3486.3059 kcal/mol (3478.2422 without restraints) Performing minimization step: 1675. Total energy = 3486.0842 kcal/mol (3478.0227 without restraints) Performing minimization step: 1676. Total energy = 3485.8625 kcal/mol (3477.8037 without restraints) Performing minimization step: 1677. Total energy = 3485.6414 kcal/mol (3477.5853 without restraints) Performing minimization step: 1678. Total energy = 3485.4199 kcal/mol (3477.3664 without restraints) Performing minimization step: 1679. Total energy = 3485.1989 kcal/mol (3477.1481 without restraints) Performing minimization step: 1680. Total energy = 3484.9786 kcal/mol (3476.9305 without restraints) Performing minimization step: 1681. Total energy = 3484.7581 kcal/mol (3476.7123 without restraints) Performing minimization step: 1682. Total energy = 3484.5377 kcal/mol (3476.4945 without restraints) Performing minimization step: 1683. Total energy = 3484.3172 kcal/mol (3476.2766 without restraints) Performing minimization step: 1684. Total energy = 3484.0968 kcal/mol (3476.0588 without restraints) Performing minimization step: 1685. Total energy = 3483.8768 kcal/mol (3475.8413 without restraints) Performing minimization step: 1686. Total energy = 3483.6572 kcal/mol (3475.6242 without restraints) Performing minimization step: 1687. Total energy = 3483.4380 kcal/mol (3475.4077 without restraints) Performing minimization step: 1688. Total energy = 3483.2175 kcal/mol (3475.1897 without restraints) Performing minimization step: 1689. Total energy = 3482.9980 kcal/mol (3474.9728 without restraints) Performing minimization step: 1690. Total energy = 3482.7787 kcal/mol (3474.7562 without restraints) Performing minimization step: 1691. Total energy = 3482.5602 kcal/mol (3474.5401 without restraints) Performing minimization step: 1692. Total energy = 3482.3413 kcal/mol (3474.3238 without restraints) Performing minimization step: 1693. Total energy = 3482.1227 kcal/mol (3474.1077 without restraints) Performing minimization step: 1694. Total energy = 3481.9038 kcal/mol (3473.8915 without restraints) Performing minimization step: 1695. Total energy = 3481.6847 kcal/mol (3473.6749 without restraints) Performing minimization step: 1696. Total energy = 3481.4659 kcal/mol (3473.4586 without restraints) Performing minimization step: 1697. Total energy = 3481.2474 kcal/mol (3473.2427 without restraints) Performing minimization step: 1698. Total energy = 3481.0290 kcal/mol (3473.0269 without restraints) Performing minimization step: 1699. Total energy = 3480.8111 kcal/mol (3472.8116 without restraints) Performing minimization step: 1700. Total energy = 3480.5930 kcal/mol (3472.5959 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 3480.3749 kcal/mol (3472.3803 without restraints) Performing minimization step: 1702. Total energy = 3480.1570 kcal/mol (3472.1650 without restraints) Performing minimization step: 1703. Total energy = 3479.9394 kcal/mol (3471.9501 without restraints) Performing minimization step: 1704. Total energy = 3479.7221 kcal/mol (3471.7353 without restraints) Performing minimization step: 1705. Total energy = 3479.5049 kcal/mol (3471.5206 without restraints) Performing minimization step: 1706. Total energy = 3479.2879 kcal/mol (3471.3062 without restraints) Performing minimization step: 1707. Total energy = 3479.0709 kcal/mol (3471.0917 without restraints) Performing minimization step: 1708. Total energy = 3478.8536 kcal/mol (3470.8769 without restraints) Performing minimization step: 1709. Total energy = 3478.6367 kcal/mol (3470.6626 without restraints) Performing minimization step: 1710. Total energy = 3478.4205 kcal/mol (3470.4489 without restraints) Performing minimization step: 1711. Total energy = 3478.2043 kcal/mol (3470.2352 without restraints) Performing minimization step: 1712. Total energy = 3477.9880 kcal/mol (3470.0213 without restraints) Performing minimization step: 1713. Total energy = 3477.7720 kcal/mol (3469.8081 without restraints) Performing minimization step: 1714. Total energy = 3477.5559 kcal/mol (3469.5944 without restraints) Performing minimization step: 1715. Total energy = 3477.3398 kcal/mol (3469.3809 without restraints) Performing minimization step: 1716. Total energy = 3477.1241 kcal/mol (3469.1677 without restraints) Performing minimization step: 1717. Total energy = 3476.9084 kcal/mol (3468.9545 without restraints) Performing minimization step: 1718. Total energy = 3476.6931 kcal/mol (3468.7417 without restraints) Performing minimization step: 1719. Total energy = 3476.4777 kcal/mol (3468.5289 without restraints) Performing minimization step: 1720. Total energy = 3476.2626 kcal/mol (3468.3164 without restraints) Performing minimization step: 1721. Total energy = 3476.0478 kcal/mol (3468.1040 without restraints) Performing minimization step: 1722. Total energy = 3475.8326 kcal/mol (3467.8914 without restraints) Performing minimization step: 1723. Total energy = 3475.6176 kcal/mol (3467.6789 without restraints) Performing minimization step: 1724. Total energy = 3475.4029 kcal/mol (3467.4666 without restraints) Performing minimization step: 1725. Total energy = 3475.1886 kcal/mol (3467.2547 without restraints) Performing minimization step: 1726. Total energy = 3474.9741 kcal/mol (3467.0428 without restraints) Performing minimization step: 1727. Total energy = 3474.7597 kcal/mol (3466.8310 without restraints) Performing minimization step: 1728. Total energy = 3474.5458 kcal/mol (3466.6196 without restraints) Performing minimization step: 1729. Total energy = 3474.3316 kcal/mol (3466.4079 without restraints) Performing minimization step: 1730. Total energy = 3474.1176 kcal/mol (3466.1965 without restraints) Performing minimization step: 1731. Total energy = 3473.9039 kcal/mol (3465.9852 without restraints) Performing minimization step: 1732. Total energy = 3473.6902 kcal/mol (3465.7741 without restraints) Performing minimization step: 1733. Total energy = 3473.4759 kcal/mol (3465.5622 without restraints) Performing minimization step: 1734. Total energy = 3473.2623 kcal/mol (3465.3512 without restraints) Performing minimization step: 1735. Total energy = 3473.0489 kcal/mol (3465.1402 without restraints) Performing minimization step: 1736. Total energy = 3472.8358 kcal/mol (3464.9296 without restraints) Performing minimization step: 1737. Total energy = 3472.6225 kcal/mol (3464.7189 without restraints) Performing minimization step: 1738. Total energy = 3472.4097 kcal/mol (3464.5086 without restraints) Performing minimization step: 1739. Total energy = 3472.1968 kcal/mol (3464.2981 without restraints) Performing minimization step: 1740. Total energy = 3471.9843 kcal/mol (3464.0882 without restraints) Performing minimization step: 1741. Total energy = 3471.7718 kcal/mol (3463.8784 without restraints) Performing minimization step: 1742. Total energy = 3471.5597 kcal/mol (3463.6686 without restraints) Performing minimization step: 1743. Total energy = 3471.3474 kcal/mol (3463.4586 without restraints) Performing minimization step: 1744. Total energy = 3471.1349 kcal/mol (3463.2487 without restraints) Performing minimization step: 1745. Total energy = 3470.9229 kcal/mol (3463.0392 without restraints) Performing minimization step: 1746. Total energy = 3470.7114 kcal/mol (3462.8302 without restraints) Performing minimization step: 1747. Total energy = 3470.4992 kcal/mol (3462.6206 without restraints) Performing minimization step: 1748. Total energy = 3470.2877 kcal/mol (3462.4114 without restraints) Performing minimization step: 1749. Total energy = 3470.0759 kcal/mol (3462.2022 without restraints) Performing minimization step: 1750. Total energy = 3469.8647 kcal/mol (3461.9935 without restraints) Performing minimization step: 1751. Total energy = 3469.6537 kcal/mol (3461.7849 without restraints) Performing minimization step: 1752. Total energy = 3469.4426 kcal/mol (3461.5763 without restraints) Performing minimization step: 1753. Total energy = 3469.2316 kcal/mol (3461.3678 without restraints) Performing minimization step: 1754. Total energy = 3469.0209 kcal/mol (3461.1597 without restraints) Performing minimization step: 1755. Total energy = 3468.8098 kcal/mol (3460.9509 without restraints) Performing minimization step: 1756. Total energy = 3468.5995 kcal/mol (3460.7431 without restraints) Performing minimization step: 1757. Total energy = 3468.3890 kcal/mol (3460.5351 without restraints) Performing minimization step: 1758. Total energy = 3468.1791 kcal/mol (3460.3277 without restraints) Performing minimization step: 1759. Total energy = 3467.9688 kcal/mol (3460.1197 without restraints) Performing minimization step: 1760. Total energy = 3467.7584 kcal/mol (3459.9118 without restraints) Performing minimization step: 1761. Total energy = 3467.5483 kcal/mol (3459.7041 without restraints) Performing minimization step: 1762. Total energy = 3467.3385 kcal/mol (3459.4969 without restraints) Performing minimization step: 1763. Total energy = 3467.1285 kcal/mol (3459.2894 without restraints) Performing minimization step: 1764. Total energy = 3466.9190 kcal/mol (3459.0822 without restraints) Performing minimization step: 1765. Total energy = 3466.7096 kcal/mol (3458.8753 without restraints) Performing minimization step: 1766. Total energy = 3466.4993 kcal/mol (3458.6676 without restraints) Performing minimization step: 1767. Total energy = 3466.2901 kcal/mol (3458.4608 without restraints) Performing minimization step: 1768. Total energy = 3466.0805 kcal/mol (3458.2537 without restraints) Performing minimization step: 1769. Total energy = 3465.8713 kcal/mol (3458.0469 without restraints) Performing minimization step: 1770. Total energy = 3465.6623 kcal/mol (3457.8405 without restraints) Performing minimization step: 1771. Total energy = 3465.4533 kcal/mol (3457.6337 without restraints) Performing minimization step: 1772. Total energy = 3465.2446 kcal/mol (3457.4276 without restraints) Performing minimization step: 1773. Total energy = 3465.0359 kcal/mol (3457.2216 without restraints) Performing minimization step: 1774. Total energy = 3464.8274 kcal/mol (3457.0152 without restraints) Performing minimization step: 1775. Total energy = 3464.6190 kcal/mol (3456.8093 without restraints) Performing minimization step: 1776. Total energy = 3464.4106 kcal/mol (3456.6033 without restraints) Performing minimization step: 1777. Total energy = 3464.2025 kcal/mol (3456.3977 without restraints) Performing minimization step: 1778. Total energy = 3463.9946 kcal/mol (3456.1922 without restraints) Performing minimization step: 1779. Total energy = 3463.7866 kcal/mol (3455.9867 without restraints) Performing minimization step: 1780. Total energy = 3463.5786 kcal/mol (3455.7812 without restraints) Performing minimization step: 1781. Total energy = 3463.3708 kcal/mol (3455.5756 without restraints) Performing minimization step: 1782. Total energy = 3463.1631 kcal/mol (3455.3705 without restraints) Performing minimization step: 1783. Total energy = 3462.9554 kcal/mol (3455.1651 without restraints) Performing minimization step: 1784. Total energy = 3462.7481 kcal/mol (3454.9605 without restraints) Performing minimization step: 1785. Total energy = 3462.5412 kcal/mol (3454.7559 without restraints) Performing minimization step: 1786. Total energy = 3462.3342 kcal/mol (3454.5515 without restraints) Performing minimization step: 1787. Total energy = 3462.1273 kcal/mol (3454.3470 without restraints) Performing minimization step: 1788. Total energy = 3461.9205 kcal/mol (3454.1426 without restraints) Performing minimization step: 1789. Total energy = 3461.7137 kcal/mol (3453.9379 without restraints) Performing minimization step: 1790. Total energy = 3461.5070 kcal/mol (3453.7339 without restraints) Performing minimization step: 1791. Total energy = 3461.3004 kcal/mol (3453.5297 without restraints) Performing minimization step: 1792. Total energy = 3461.0939 kcal/mol (3453.3256 without restraints) Performing minimization step: 1793. Total energy = 3460.8878 kcal/mol (3453.1219 without restraints) Performing minimization step: 1794. Total energy = 3460.6818 kcal/mol (3452.9184 without restraints) Performing minimization step: 1795. Total energy = 3460.4758 kcal/mol (3452.7149 without restraints) Performing minimization step: 1796. Total energy = 3460.2697 kcal/mol (3452.5112 without restraints) Performing minimization step: 1797. Total energy = 3460.0640 kcal/mol (3452.3079 without restraints) Performing minimization step: 1798. Total energy = 3459.8586 kcal/mol (3452.1049 without restraints) Performing minimization step: 1799. Total energy = 3459.6530 kcal/mol (3451.9017 without restraints) Performing minimization step: 1800. Total energy = 3459.4469 kcal/mol (3451.6978 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 3459.2413 kcal/mol (3451.4948 without restraints) Performing minimization step: 1802. Total energy = 3459.0363 kcal/mol (3451.2923 without restraints) Performing minimization step: 1803. Total energy = 3458.8312 kcal/mol (3451.0895 without restraints) Performing minimization step: 1804. Total energy = 3458.6260 kcal/mol (3450.8867 without restraints) Performing minimization step: 1805. Total energy = 3458.4208 kcal/mol (3450.6840 without restraints) Performing minimization step: 1806. Total energy = 3458.2163 kcal/mol (3450.4819 without restraints) Performing minimization step: 1807. Total energy = 3458.0120 kcal/mol (3450.2800 without restraints) Performing minimization step: 1808. Total energy = 3457.8075 kcal/mol (3450.0777 without restraints) Performing minimization step: 1809. Total energy = 3457.6029 kcal/mol (3449.8757 without restraints) Performing minimization step: 1810. Total energy = 3457.3988 kcal/mol (3449.6740 without restraints) Performing minimization step: 1811. Total energy = 3457.1942 kcal/mol (3449.4717 without restraints) Performing minimization step: 1812. Total energy = 3456.9901 kcal/mol (3449.2700 without restraints) Performing minimization step: 1813. Total energy = 3456.7856 kcal/mol (3449.0678 without restraints) Performing minimization step: 1814. Total energy = 3456.5816 kcal/mol (3448.8664 without restraints) Performing minimization step: 1815. Total energy = 3456.3781 kcal/mol (3448.6652 without restraints) Performing minimization step: 1816. Total energy = 3456.1744 kcal/mol (3448.4640 without restraints) Performing minimization step: 1817. Total energy = 3455.9706 kcal/mol (3448.2625 without restraints) Performing minimization step: 1818. Total energy = 3455.7673 kcal/mol (3448.0617 without restraints) Performing minimization step: 1819. Total energy = 3455.5638 kcal/mol (3447.8604 without restraints) Performing minimization step: 1820. Total energy = 3455.3601 kcal/mol (3447.6592 without restraints) Performing minimization step: 1821. Total energy = 3455.1574 kcal/mol (3447.4589 without restraints) Performing minimization step: 1822. Total energy = 3454.9545 kcal/mol (3447.2584 without restraints) Performing minimization step: 1823. Total energy = 3454.7513 kcal/mol (3447.0575 without restraints) Performing minimization step: 1824. Total energy = 3454.5478 kcal/mol (3446.8563 without restraints) Performing minimization step: 1825. Total energy = 3454.3455 kcal/mol (3446.6565 without restraints) Performing minimization step: 1826. Total energy = 3454.1427 kcal/mol (3446.4559 without restraints) Performing minimization step: 1827. Total energy = 3453.9398 kcal/mol (3446.2554 without restraints) Performing minimization step: 1828. Total energy = 3453.7367 kcal/mol (3446.0549 without restraints) Performing minimization step: 1829. Total energy = 3453.5345 kcal/mol (3445.8550 without restraints) Performing minimization step: 1830. Total energy = 3453.3323 kcal/mol (3445.6552 without restraints) Performing minimization step: 1831. Total energy = 3453.1301 kcal/mol (3445.4553 without restraints) Performing minimization step: 1832. Total energy = 3452.9282 kcal/mol (3445.2558 without restraints) Performing minimization step: 1833. Total energy = 3452.7262 kcal/mol (3445.0562 without restraints) Performing minimization step: 1834. Total energy = 3452.5243 kcal/mol (3444.8567 without restraints) Performing minimization step: 1835. Total energy = 3452.3231 kcal/mol (3444.6580 without restraints) Performing minimization step: 1836. Total energy = 3452.1220 kcal/mol (3444.4592 without restraints) Performing minimization step: 1837. Total energy = 3451.9206 kcal/mol (3444.2600 without restraints) Performing minimization step: 1838. Total energy = 3451.7192 kcal/mol (3444.0611 without restraints) Performing minimization step: 1839. Total energy = 3451.5181 kcal/mol (3443.8623 without restraints) Performing minimization step: 1840. Total energy = 3451.3167 kcal/mol (3443.6632 without restraints) Performing minimization step: 1841. Total energy = 3451.1159 kcal/mol (3443.4648 without restraints) Performing minimization step: 1842. Total energy = 3450.9148 kcal/mol (3443.2661 without restraints) Performing minimization step: 1843. Total energy = 3450.7140 kcal/mol (3443.0676 without restraints) Performing minimization step: 1844. Total energy = 3450.5133 kcal/mol (3442.8692 without restraints) Performing minimization step: 1845. Total energy = 3450.3123 kcal/mol (3442.6706 without restraints) Performing minimization step: 1846. Total energy = 3450.1119 kcal/mol (3442.4726 without restraints) Performing minimization step: 1847. Total energy = 3449.9114 kcal/mol (3442.2743 without restraints) Performing minimization step: 1848. Total energy = 3449.7107 kcal/mol (3442.0761 without restraints) Performing minimization step: 1849. Total energy = 3449.5106 kcal/mol (3441.8784 without restraints) Performing minimization step: 1850. Total energy = 3449.3104 kcal/mol (3441.6805 without restraints) Performing minimization step: 1851. Total energy = 3449.1104 kcal/mol (3441.4827 without restraints) Performing minimization step: 1852. Total energy = 3448.9095 kcal/mol (3441.2842 without restraints) Performing minimization step: 1853. Total energy = 3448.7098 kcal/mol (3441.0870 without restraints) Performing minimization step: 1854. Total energy = 3448.5100 kcal/mol (3440.8892 without restraints) Performing minimization step: 1855. Total energy = 3448.3102 kcal/mol (3440.6919 without restraints) Performing minimization step: 1856. Total energy = 3448.1103 kcal/mol (3440.4943 without restraints) Performing minimization step: 1857. Total energy = 3447.9107 kcal/mol (3440.2971 without restraints) Performing minimization step: 1858. Total energy = 3447.7113 kcal/mol (3440.1000 without restraints) Performing minimization step: 1859. Total energy = 3447.5120 kcal/mol (3439.9031 without restraints) Performing minimization step: 1860. Total energy = 3447.3126 kcal/mol (3439.7061 without restraints) Performing minimization step: 1861. Total energy = 3447.1139 kcal/mol (3439.5097 without restraints) Performing minimization step: 1862. Total energy = 3446.9148 kcal/mol (3439.3128 without restraints) Performing minimization step: 1863. Total energy = 3446.7158 kcal/mol (3439.1162 without restraints) Performing minimization step: 1864. Total energy = 3446.5171 kcal/mol (3438.9200 without restraints) Performing minimization step: 1865. Total energy = 3446.3186 kcal/mol (3438.7238 without restraints) Performing minimization step: 1866. Total energy = 3446.1203 kcal/mol (3438.5277 without restraints) Performing minimization step: 1867. Total energy = 3445.9217 kcal/mol (3438.3314 without restraints) Performing minimization step: 1868. Total energy = 3445.7233 kcal/mol (3438.1353 without restraints) Performing minimization step: 1869. Total energy = 3445.5245 kcal/mol (3437.9388 without restraints) Performing minimization step: 1870. Total energy = 3445.3264 kcal/mol (3437.7431 without restraints) Performing minimization step: 1871. Total energy = 3445.1286 kcal/mol (3437.5476 without restraints) Performing minimization step: 1872. Total energy = 3444.9304 kcal/mol (3437.3517 without restraints) Performing minimization step: 1873. Total energy = 3444.7326 kcal/mol (3437.1563 without restraints) Performing minimization step: 1874. Total energy = 3444.5349 kcal/mol (3436.9610 without restraints) Performing minimization step: 1875. Total energy = 3444.3378 kcal/mol (3436.7659 without restraints) Performing minimization step: 1876. Total energy = 3444.1399 kcal/mol (3436.5706 without restraints) Performing minimization step: 1877. Total energy = 3443.9427 kcal/mol (3436.3756 without restraints) Performing minimization step: 1878. Total energy = 3443.7459 kcal/mol (3436.1812 without restraints) Performing minimization step: 1879. Total energy = 3443.5486 kcal/mol (3435.9861 without restraints) Performing minimization step: 1880. Total energy = 3443.3516 kcal/mol (3435.7915 without restraints) Performing minimization step: 1881. Total energy = 3443.1543 kcal/mol (3435.5964 without restraints) Performing minimization step: 1882. Total energy = 3442.9569 kcal/mol (3435.4014 without restraints) Performing minimization step: 1883. Total energy = 3442.7596 kcal/mol (3435.2062 without restraints) Performing minimization step: 1884. Total energy = 3442.5625 kcal/mol (3435.0115 without restraints) Performing minimization step: 1885. Total energy = 3442.3655 kcal/mol (3434.8170 without restraints) Performing minimization step: 1886. Total energy = 3442.1694 kcal/mol (3434.6230 without restraints) Performing minimization step: 1887. Total energy = 3441.9730 kcal/mol (3434.4287 without restraints) Performing minimization step: 1888. Total energy = 3441.7761 kcal/mol (3434.2343 without restraints) Performing minimization step: 1889. Total energy = 3441.5799 kcal/mol (3434.0404 without restraints) Performing minimization step: 1890. Total energy = 3441.3835 kcal/mol (3433.8463 without restraints) Performing minimization step: 1891. Total energy = 3441.1872 kcal/mol (3433.6523 without restraints) Performing minimization step: 1892. Total energy = 3440.9910 kcal/mol (3433.4584 without restraints) Performing minimization step: 1893. Total energy = 3440.7950 kcal/mol (3433.2647 without restraints) Performing minimization step: 1894. Total energy = 3440.5997 kcal/mol (3433.0717 without restraints) Performing minimization step: 1895. Total energy = 3440.4039 kcal/mol (3432.8781 without restraints) Performing minimization step: 1896. Total energy = 3440.2085 kcal/mol (3432.6851 without restraints) Performing minimization step: 1897. Total energy = 3440.0129 kcal/mol (3432.4917 without restraints) Performing minimization step: 1898. Total energy = 3439.8175 kcal/mol (3432.2986 without restraints) Performing minimization step: 1899. Total energy = 3439.6222 kcal/mol (3432.1056 without restraints) Performing minimization step: 1900. Total energy = 3439.4271 kcal/mol (3431.9128 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 3439.2318 kcal/mol (3431.7197 without restraints) Performing minimization step: 1902. Total energy = 3439.0361 kcal/mol (3431.5263 without restraints) Performing minimization step: 1903. Total energy = 3438.8414 kcal/mol (3431.3339 without restraints) Performing minimization step: 1904. Total energy = 3438.6470 kcal/mol (3431.1416 without restraints) Performing minimization step: 1905. Total energy = 3438.4519 kcal/mol (3430.9490 without restraints) Performing minimization step: 1906. Total energy = 3438.2571 kcal/mol (3430.7564 without restraints) Performing minimization step: 1907. Total energy = 3438.0631 kcal/mol (3430.5648 without restraints) Performing minimization step: 1908. Total energy = 3437.8686 kcal/mol (3430.3723 without restraints) Performing minimization step: 1909. Total energy = 3437.6738 kcal/mol (3430.1798 without restraints) Performing minimization step: 1910. Total energy = 3437.4798 kcal/mol (3429.9882 without restraints) Performing minimization step: 1911. Total energy = 3437.2859 kcal/mol (3429.7965 without restraints) Performing minimization step: 1912. Total energy = 3437.0915 kcal/mol (3429.6045 without restraints) Performing minimization step: 1913. Total energy = 3436.8979 kcal/mol (3429.4131 without restraints) Performing minimization step: 1914. Total energy = 3436.7041 kcal/mol (3429.2215 without restraints) Performing minimization step: 1915. Total energy = 3436.5103 kcal/mol (3429.0300 without restraints) Performing minimization step: 1916. Total energy = 3436.3166 kcal/mol (3428.8386 without restraints) Performing minimization step: 1917. Total energy = 3436.1233 kcal/mol (3428.6475 without restraints) Performing minimization step: 1918. Total energy = 3435.9298 kcal/mol (3428.4562 without restraints) Performing minimization step: 1919. Total energy = 3435.7365 kcal/mol (3428.2652 without restraints) Performing minimization step: 1920. Total energy = 3435.5432 kcal/mol (3428.0742 without restraints) Performing minimization step: 1921. Total energy = 3435.3504 kcal/mol (3427.8836 without restraints) Performing minimization step: 1922. Total energy = 3435.1570 kcal/mol (3427.6924 without restraints) Performing minimization step: 1923. Total energy = 3434.9641 kcal/mol (3427.5018 without restraints) Performing minimization step: 1924. Total energy = 3434.7715 kcal/mol (3427.3114 without restraints) Performing minimization step: 1925. Total energy = 3434.5790 kcal/mol (3427.1212 without restraints) Performing minimization step: 1926. Total energy = 3434.3865 kcal/mol (3426.9310 without restraints) Performing minimization step: 1927. Total energy = 3434.1938 kcal/mol (3426.7405 without restraints) Performing minimization step: 1928. Total energy = 3434.0011 kcal/mol (3426.5500 without restraints) Performing minimization step: 1929. Total energy = 3433.8087 kcal/mol (3426.3598 without restraints) Performing minimization step: 1930. Total energy = 3433.6159 kcal/mol (3426.1692 without restraints) Performing minimization step: 1931. Total energy = 3433.4238 kcal/mol (3425.9794 without restraints) Performing minimization step: 1932. Total energy = 3433.2317 kcal/mol (3425.7895 without restraints) Performing minimization step: 1933. Total energy = 3433.0394 kcal/mol (3425.5994 without restraints) Performing minimization step: 1934. Total energy = 3432.8467 kcal/mol (3425.4092 without restraints) Performing minimization step: 1935. Total energy = 3432.6546 kcal/mol (3425.2192 without restraints) Performing minimization step: 1936. Total energy = 3432.4627 kcal/mol (3425.0295 without restraints) Performing minimization step: 1937. Total energy = 3432.2706 kcal/mol (3424.8396 without restraints) Performing minimization step: 1938. Total energy = 3432.0789 kcal/mol (3424.6501 without restraints) Performing minimization step: 1939. Total energy = 3431.8870 kcal/mol (3424.4604 without restraints) Performing minimization step: 1940. Total energy = 3431.6951 kcal/mol (3424.2708 without restraints) Performing minimization step: 1941. Total energy = 3431.5037 kcal/mol (3424.0817 without restraints) Performing minimization step: 1942. Total energy = 3431.3121 kcal/mol (3423.8922 without restraints) Performing minimization step: 1943. Total energy = 3431.1206 kcal/mol (3423.7029 without restraints) Performing minimization step: 1944. Total energy = 3430.9292 kcal/mol (3423.5139 without restraints) Performing minimization step: 1945. Total energy = 3430.7381 kcal/mol (3423.3249 without restraints) Performing minimization step: 1946. Total energy = 3430.5465 kcal/mol (3423.1355 without restraints) Performing minimization step: 1947. Total energy = 3430.3551 kcal/mol (3422.9463 without restraints) Performing minimization step: 1948. Total energy = 3430.1640 kcal/mol (3422.7574 without restraints) Performing minimization step: 1949. Total energy = 3429.9732 kcal/mol (3422.5689 without restraints) Performing minimization step: 1950. Total energy = 3429.7826 kcal/mol (3422.3805 without restraints) Performing minimization step: 1951. Total energy = 3429.5918 kcal/mol (3422.1919 without restraints) Performing minimization step: 1952. Total energy = 3429.4007 kcal/mol (3422.0030 without restraints) Performing minimization step: 1953. Total energy = 3429.2107 kcal/mol (3421.8152 without restraints) Performing minimization step: 1954. Total energy = 3429.0201 kcal/mol (3421.6268 without restraints) Performing minimization step: 1955. Total energy = 3428.8289 kcal/mol (3421.4378 without restraints) Performing minimization step: 1956. Total energy = 3428.6388 kcal/mol (3421.2500 without restraints) Performing minimization step: 1957. Total energy = 3428.4487 kcal/mol (3421.0620 without restraints) Performing minimization step: 1958. Total energy = 3428.2587 kcal/mol (3420.8742 without restraints) Performing minimization step: 1959. Total energy = 3428.0685 kcal/mol (3420.6862 without restraints) Performing minimization step: 1960. Total energy = 3427.8785 kcal/mol (3420.4984 without restraints) Performing minimization step: 1961. Total energy = 3427.6892 kcal/mol (3420.3115 without restraints) Performing minimization step: 1962. Total energy = 3427.4996 kcal/mol (3420.1238 without restraints) Performing minimization step: 1963. Total energy = 3427.3102 kcal/mol (3419.9368 without restraints) Performing minimization step: 1964. Total energy = 3427.1207 kcal/mol (3419.7494 without restraints) Performing minimization step: 1965. Total energy = 3426.9314 kcal/mol (3419.5623 without restraints) Performing minimization step: 1966. Total energy = 3426.7416 kcal/mol (3419.3747 without restraints) Performing minimization step: 1967. Total energy = 3426.5523 kcal/mol (3419.1875 without restraints) Performing minimization step: 1968. Total energy = 3426.3630 kcal/mol (3419.0007 without restraints) Performing minimization step: 1969. Total energy = 3426.1741 kcal/mol (3418.8137 without restraints) Performing minimization step: 1970. Total energy = 3425.9848 kcal/mol (3418.6266 without restraints) Performing minimization step: 1971. Total energy = 3425.7958 kcal/mol (3418.4399 without restraints) Performing minimization step: 1972. Total energy = 3425.6070 kcal/mol (3418.2532 without restraints) Performing minimization step: 1973. Total energy = 3425.4179 kcal/mol (3418.0663 without restraints) Performing minimization step: 1974. Total energy = 3425.2293 kcal/mol (3417.8799 without restraints) Performing minimization step: 1975. Total energy = 3425.0406 kcal/mol (3417.6934 without restraints) Performing minimization step: 1976. Total energy = 3424.8518 kcal/mol (3417.5066 without restraints) Performing minimization step: 1977. Total energy = 3424.6627 kcal/mol (3417.3198 without restraints) Performing minimization step: 1978. Total energy = 3424.4743 kcal/mol (3417.1336 without restraints) Performing minimization step: 1979. Total energy = 3424.2859 kcal/mol (3416.9474 without restraints) Performing minimization step: 1980. Total energy = 3424.0979 kcal/mol (3416.7615 without restraints) Performing minimization step: 1981. Total energy = 3423.9097 kcal/mol (3416.5755 without restraints) Performing minimization step: 1982. Total energy = 3423.7217 kcal/mol (3416.3897 without restraints) Performing minimization step: 1983. Total energy = 3423.5339 kcal/mol (3416.2040 without restraints) Performing minimization step: 1984. Total energy = 3423.3466 kcal/mol (3416.0188 without restraints) Performing minimization step: 1985. Total energy = 3423.1589 kcal/mol (3415.8334 without restraints) Performing minimization step: 1986. Total energy = 3422.9708 kcal/mol (3415.6474 without restraints) Performing minimization step: 1987. Total energy = 3422.7831 kcal/mol (3415.4619 without restraints) Performing minimization step: 1988. Total energy = 3422.5955 kcal/mol (3415.2764 without restraints) Performing minimization step: 1989. Total energy = 3422.4072 kcal/mol (3415.0902 without restraints) Performing minimization step: 1990. Total energy = 3422.2192 kcal/mol (3414.9045 without restraints) Performing minimization step: 1991. Total energy = 3422.0318 kcal/mol (3414.7192 without restraints) Performing minimization step: 1992. Total energy = 3421.8438 kcal/mol (3414.5334 without restraints) Performing minimization step: 1993. Total energy = 3421.6562 kcal/mol (3414.3479 without restraints) Performing minimization step: 1994. Total energy = 3421.4690 kcal/mol (3414.1628 without restraints) Performing minimization step: 1995. Total energy = 3421.2825 kcal/mol (3413.9785 without restraints) Performing minimization step: 1996. Total energy = 3421.0952 kcal/mol (3413.7934 without restraints) Performing minimization step: 1997. Total energy = 3420.9079 kcal/mol (3413.6081 without restraints) Performing minimization step: 1998. Total energy = 3420.7210 kcal/mol (3413.4234 without restraints) Performing minimization step: 1999. Total energy = 3420.5340 kcal/mol (3413.2386 without restraints) Performing minimization step: 2000. Total energy = 3420.3475 kcal/mol (3413.0543 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 3420.1608 kcal/mol (3412.8696 without restraints) Performing minimization step: 2002. Total energy = 3419.9739 kcal/mol (3412.6849 without restraints) Performing minimization step: 2003. Total energy = 3419.7873 kcal/mol (3412.5006 without restraints) Performing minimization step: 2004. Total energy = 3419.6012 kcal/mol (3412.3165 without restraints) Performing minimization step: 2005. Total energy = 3419.4144 kcal/mol (3412.1319 without restraints) Performing minimization step: 2006. Total energy = 3419.2281 kcal/mol (3411.9477 without restraints) Performing minimization step: 2007. Total energy = 3419.0419 kcal/mol (3411.7637 without restraints) Performing minimization step: 2008. Total energy = 3418.8559 kcal/mol (3411.5798 without restraints) Performing minimization step: 2009. Total energy = 3418.6698 kcal/mol (3411.3958 without restraints) Performing minimization step: 2010. Total energy = 3418.4837 kcal/mol (3411.2118 without restraints) Performing minimization step: 2011. Total energy = 3418.2981 kcal/mol (3411.0283 without restraints) Performing minimization step: 2012. Total energy = 3418.1125 kcal/mol (3410.8449 without restraints) Performing minimization step: 2013. Total energy = 3417.9263 kcal/mol (3410.6608 without restraints) Performing minimization step: 2014. Total energy = 3417.7407 kcal/mol (3410.4773 without restraints) Performing minimization step: 2015. Total energy = 3417.5553 kcal/mol (3410.2941 without restraints) Performing minimization step: 2016. Total energy = 3417.3694 kcal/mol (3410.1103 without restraints) Performing minimization step: 2017. Total energy = 3417.1837 kcal/mol (3409.9267 without restraints) Performing minimization step: 2018. Total energy = 3416.9988 kcal/mol (3409.7439 without restraints) Performing minimization step: 2019. Total energy = 3416.8135 kcal/mol (3409.5607 without restraints) Performing minimization step: 2020. Total energy = 3416.6283 kcal/mol (3409.3776 without restraints) Performing minimization step: 2021. Total energy = 3416.4431 kcal/mol (3409.1946 without restraints) Performing minimization step: 2022. Total energy = 3416.2579 kcal/mol (3409.0116 without restraints) Performing minimization step: 2023. Total energy = 3416.0730 kcal/mol (3408.8287 without restraints) Performing minimization step: 2024. Total energy = 3415.8880 kcal/mol (3408.6459 without restraints) Performing minimization step: 2025. Total energy = 3415.7032 kcal/mol (3408.4632 without restraints) Performing minimization step: 2026. Total energy = 3415.5185 kcal/mol (3408.2806 without restraints) Performing minimization step: 2027. Total energy = 3415.3339 kcal/mol (3408.0982 without restraints) Performing minimization step: 2028. Total energy = 3415.1499 kcal/mol (3407.9162 without restraints) Performing minimization step: 2029. Total energy = 3414.9650 kcal/mol (3407.7334 without restraints) Performing minimization step: 2030. Total energy = 3414.7806 kcal/mol (3407.5511 without restraints) Performing minimization step: 2031. Total energy = 3414.5961 kcal/mol (3407.3686 without restraints) Performing minimization step: 2032. Total energy = 3414.4118 kcal/mol (3407.1866 without restraints) Performing minimization step: 2033. Total energy = 3414.2274 kcal/mol (3407.0041 without restraints) Performing minimization step: 2034. Total energy = 3414.0436 kcal/mol (3406.8225 without restraints) Performing minimization step: 2035. Total energy = 3413.8586 kcal/mol (3406.6396 without restraints) Performing minimization step: 2036. Total energy = 3413.6747 kcal/mol (3406.4578 without restraints) Performing minimization step: 2037. Total energy = 3413.4906 kcal/mol (3406.2759 without restraints) Performing minimization step: 2038. Total energy = 3413.3068 kcal/mol (3406.0941 without restraints) Performing minimization step: 2039. Total energy = 3413.1223 kcal/mol (3405.9117 without restraints) Performing minimization step: 2040. Total energy = 3412.9386 kcal/mol (3405.7301 without restraints) Performing minimization step: 2041. Total energy = 3412.7547 kcal/mol (3405.5483 without restraints) Performing minimization step: 2042. Total energy = 3412.5711 kcal/mol (3405.3667 without restraints) Performing minimization step: 2043. Total energy = 3412.3873 kcal/mol (3405.1851 without restraints) Performing minimization step: 2044. Total energy = 3412.2036 kcal/mol (3405.0034 without restraints) Performing minimization step: 2045. Total energy = 3412.0200 kcal/mol (3404.8219 without restraints) Performing minimization step: 2046. Total energy = 3411.8365 kcal/mol (3404.6405 without restraints) Performing minimization step: 2047. Total energy = 3411.6533 kcal/mol (3404.4594 without restraints) Performing minimization step: 2048. Total energy = 3411.4704 kcal/mol (3404.2787 without restraints) Performing minimization step: 2049. Total energy = 3411.2875 kcal/mol (3404.0977 without restraints) Performing minimization step: 2050. Total energy = 3411.1046 kcal/mol (3403.9170 without restraints) Performing minimization step: 2051. Total energy = 3410.9215 kcal/mol (3403.7360 without restraints) Performing minimization step: 2052. Total energy = 3410.7387 kcal/mol (3403.5553 without restraints) Performing minimization step: 2053. Total energy = 3410.5560 kcal/mol (3403.3747 without restraints) Performing minimization step: 2054. Total energy = 3410.3732 kcal/mol (3403.1939 without restraints) Performing minimization step: 2055. Total energy = 3410.1902 kcal/mol (3403.0128 without restraints) Performing minimization step: 2056. Total energy = 3410.0074 kcal/mol (3402.8323 without restraints) Performing minimization step: 2057. Total energy = 3409.8250 kcal/mol (3402.6519 without restraints) Performing minimization step: 2058. Total energy = 3409.6425 kcal/mol (3402.4715 without restraints) Performing minimization step: 2059. Total energy = 3409.4603 kcal/mol (3402.2913 without restraints) Performing minimization step: 2060. Total energy = 3409.2777 kcal/mol (3402.1108 without restraints) Performing minimization step: 2061. Total energy = 3409.0955 kcal/mol (3401.9306 without restraints) Performing minimization step: 2062. Total energy = 3408.9144 kcal/mol (3401.7516 without restraints) Performing minimization step: 2063. Total energy = 3408.7323 kcal/mol (3401.5716 without restraints) Performing minimization step: 2064. Total energy = 3408.5504 kcal/mol (3401.3917 without restraints) Performing minimization step: 2065. Total energy = 3408.3686 kcal/mol (3401.2122 without restraints) Performing minimization step: 2066. Total energy = 3408.1862 kcal/mol (3401.0316 without restraints) Performing minimization step: 2067. Total energy = 3408.0047 kcal/mol (3400.8522 without restraints) Performing minimization step: 2068. Total energy = 3407.8230 kcal/mol (3400.6726 without restraints) Performing minimization step: 2069. Total energy = 3407.6420 kcal/mol (3400.4937 without restraints) Performing minimization step: 2070. Total energy = 3407.4600 kcal/mol (3400.3137 without restraints) Performing minimization step: 2071. Total energy = 3407.2785 kcal/mol (3400.1343 without restraints) Performing minimization step: 2072. Total energy = 3407.0967 kcal/mol (3399.9546 without restraints) Performing minimization step: 2073. Total energy = 3406.9159 kcal/mol (3399.7758 without restraints) Performing minimization step: 2074. Total energy = 3406.7348 kcal/mol (3399.5967 without restraints) Performing minimization step: 2075. Total energy = 3406.5536 kcal/mol (3399.4176 without restraints) Performing minimization step: 2076. Total energy = 3406.3725 kcal/mol (3399.2385 without restraints) Performing minimization step: 2077. Total energy = 3406.1916 kcal/mol (3399.0596 without restraints) Performing minimization step: 2078. Total energy = 3406.0106 kcal/mol (3398.8807 without restraints) Performing minimization step: 2079. Total energy = 3405.8294 kcal/mol (3398.7015 without restraints) Performing minimization step: 2080. Total energy = 3405.6486 kcal/mol (3398.5228 without restraints) Performing minimization step: 2081. Total energy = 3405.4674 kcal/mol (3398.3437 without restraints) Performing minimization step: 2082. Total energy = 3405.2867 kcal/mol (3398.1650 without restraints) Performing minimization step: 2083. Total energy = 3405.1063 kcal/mol (3397.9867 without restraints) Performing minimization step: 2084. Total energy = 3404.9262 kcal/mol (3397.8086 without restraints) Performing minimization step: 2085. Total energy = 3404.7458 kcal/mol (3397.6302 without restraints) Performing minimization step: 2086. Total energy = 3404.5652 kcal/mol (3397.4517 without restraints) Performing minimization step: 2087. Total energy = 3404.3849 kcal/mol (3397.2733 without restraints) Performing minimization step: 2088. Total energy = 3404.2046 kcal/mol (3397.0951 without restraints) Performing minimization step: 2089. Total energy = 3404.0240 kcal/mol (3396.9165 without restraints) Performing minimization step: 2090. Total energy = 3403.8436 kcal/mol (3396.7382 without restraints) Performing minimization step: 2091. Total energy = 3403.6635 kcal/mol (3396.5601 without restraints) Performing minimization step: 2092. Total energy = 3403.4833 kcal/mol (3396.3818 without restraints) Performing minimization step: 2093. Total energy = 3403.3033 kcal/mol (3396.2040 without restraints) Performing minimization step: 2094. Total energy = 3403.1233 kcal/mol (3396.0259 without restraints) Performing minimization step: 2095. Total energy = 3402.9434 kcal/mol (3395.8481 without restraints) Performing minimization step: 2096. Total energy = 3402.7634 kcal/mol (3395.6701 without restraints) Performing minimization step: 2097. Total energy = 3402.5833 kcal/mol (3395.4922 without restraints) Performing minimization step: 2098. Total energy = 3402.4037 kcal/mol (3395.3144 without restraints) Performing minimization step: 2099. Total energy = 3402.2243 kcal/mol (3395.1371 without restraints) Performing minimization step: 2100. Total energy = 3402.0449 kcal/mol (3394.9597 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 3401.8651 kcal/mol (3394.7819 without restraints) Performing minimization step: 2102. Total energy = 3401.6857 kcal/mol (3394.6044 without restraints) Performing minimization step: 2103. Total energy = 3401.5064 kcal/mol (3394.4273 without restraints) Performing minimization step: 2104. Total energy = 3401.3270 kcal/mol (3394.2499 without restraints) Performing minimization step: 2105. Total energy = 3401.1478 kcal/mol (3394.0727 without restraints) Performing minimization step: 2106. Total energy = 3400.9684 kcal/mol (3393.8953 without restraints) Performing minimization step: 2107. Total energy = 3400.7894 kcal/mol (3393.7184 without restraints) Performing minimization step: 2108. Total energy = 3400.6101 kcal/mol (3393.5411 without restraints) Performing minimization step: 2109. Total energy = 3400.4312 kcal/mol (3393.3640 without restraints) Performing minimization step: 2110. Total energy = 3400.2523 kcal/mol (3393.1873 without restraints) Performing minimization step: 2111. Total energy = 3400.0737 kcal/mol (3393.0106 without restraints) Performing minimization step: 2112. Total energy = 3399.8952 kcal/mol (3392.8342 without restraints) Performing minimization step: 2113. Total energy = 3399.7163 kcal/mol (3392.6573 without restraints) Performing minimization step: 2114. Total energy = 3399.5378 kcal/mol (3392.4807 without restraints) Performing minimization step: 2115. Total energy = 3399.3589 kcal/mol (3392.3039 without restraints) Performing minimization step: 2116. Total energy = 3399.1804 kcal/mol (3392.1274 without restraints) Performing minimization step: 2117. Total energy = 3399.0023 kcal/mol (3391.9511 without restraints) Performing minimization step: 2118. Total energy = 3398.8236 kcal/mol (3391.7746 without restraints) Performing minimization step: 2119. Total energy = 3398.6453 kcal/mol (3391.5982 without restraints) Performing minimization step: 2120. Total energy = 3398.4673 kcal/mol (3391.4222 without restraints) Performing minimization step: 2121. Total energy = 3398.2895 kcal/mol (3391.2463 without restraints) Performing minimization step: 2122. Total energy = 3398.1114 kcal/mol (3391.0704 without restraints) Performing minimization step: 2123. Total energy = 3397.9336 kcal/mol (3390.8945 without restraints) Performing minimization step: 2124. Total energy = 3397.7559 kcal/mol (3390.7188 without restraints) Performing minimization step: 2125. Total energy = 3397.5781 kcal/mol (3390.5429 without restraints) Performing minimization step: 2126. Total energy = 3397.4005 kcal/mol (3390.3673 without restraints) Performing minimization step: 2127. Total energy = 3397.2228 kcal/mol (3390.1917 without restraints) Performing minimization step: 2128. Total energy = 3397.0451 kcal/mol (3390.0159 without restraints) Performing minimization step: 2129. Total energy = 3396.8673 kcal/mol (3389.8400 without restraints) Performing minimization step: 2130. Total energy = 3396.6898 kcal/mol (3389.6646 without restraints) Performing minimization step: 2131. Total energy = 3396.5126 kcal/mol (3389.4894 without restraints) Performing minimization step: 2132. Total energy = 3396.3354 kcal/mol (3389.3142 without restraints) Performing minimization step: 2133. Total energy = 3396.1582 kcal/mol (3389.1388 without restraints) Performing minimization step: 2134. Total energy = 3395.9803 kcal/mol (3388.9631 without restraints) Performing minimization step: 2135. Total energy = 3395.8034 kcal/mol (3388.7881 without restraints) Performing minimization step: 2136. Total energy = 3395.6267 kcal/mol (3388.6134 without restraints) Performing minimization step: 2137. Total energy = 3395.4496 kcal/mol (3388.4383 without restraints) Performing minimization step: 2138. Total energy = 3395.2725 kcal/mol (3388.2631 without restraints) Performing minimization step: 2139. Total energy = 3395.0953 kcal/mol (3388.0879 without restraints) Performing minimization step: 2140. Total energy = 3394.9189 kcal/mol (3387.9135 without restraints) Performing minimization step: 2141. Total energy = 3394.7423 kcal/mol (3387.7389 without restraints) Performing minimization step: 2142. Total energy = 3394.5656 kcal/mol (3387.5641 without restraints) Performing minimization step: 2143. Total energy = 3394.3894 kcal/mol (3387.3899 without restraints) Performing minimization step: 2144. Total energy = 3394.2125 kcal/mol (3387.2150 without restraints) Performing minimization step: 2145. Total energy = 3394.0364 kcal/mol (3387.0409 without restraints) Performing minimization step: 2146. Total energy = 3393.8603 kcal/mol (3386.8667 without restraints) Performing minimization step: 2147. Total energy = 3393.6844 kcal/mol (3386.6928 without restraints) Performing minimization step: 2148. Total energy = 3393.5079 kcal/mol (3386.5182 without restraints) Performing minimization step: 2149. Total energy = 3393.3319 kcal/mol (3386.3441 without restraints) Performing minimization step: 2150. Total energy = 3393.1557 kcal/mol (3386.1699 without restraints) Performing minimization step: 2151. Total energy = 3392.9798 kcal/mol (3385.9960 without restraints) Performing minimization step: 2152. Total energy = 3392.8041 kcal/mol (3385.8223 without restraints) Performing minimization step: 2153. Total energy = 3392.6283 kcal/mol (3385.6483 without restraints) Performing minimization step: 2154. Total energy = 3392.4527 kcal/mol (3385.4748 without restraints) Performing minimization step: 2155. Total energy = 3392.2771 kcal/mol (3385.3010 without restraints) Performing minimization step: 2156. Total energy = 3392.1013 kcal/mol (3385.1272 without restraints) Performing minimization step: 2157. Total energy = 3391.9257 kcal/mol (3384.9535 without restraints) Performing minimization step: 2158. Total energy = 3391.7500 kcal/mol (3384.7797 without restraints) Performing minimization step: 2159. Total energy = 3391.5746 kcal/mol (3384.6065 without restraints) Performing minimization step: 2160. Total energy = 3391.3995 kcal/mol (3384.4333 without restraints) Performing minimization step: 2161. Total energy = 3391.2242 kcal/mol (3384.2600 without restraints) Performing minimization step: 2162. Total energy = 3391.0489 kcal/mol (3384.0865 without restraints) Performing minimization step: 2163. Total energy = 3390.8738 kcal/mol (3383.9134 without restraints) Performing minimization step: 2164. Total energy = 3390.6989 kcal/mol (3383.7404 without restraints) Performing minimization step: 2165. Total energy = 3390.5238 kcal/mol (3383.5671 without restraints) Performing minimization step: 2166. Total energy = 3390.3485 kcal/mol (3383.3938 without restraints) Performing minimization step: 2167. Total energy = 3390.1736 kcal/mol (3383.2210 without restraints) Performing minimization step: 2168. Total energy = 3389.9991 kcal/mol (3383.0484 without restraints) Performing minimization step: 2169. Total energy = 3389.8241 kcal/mol (3382.8751 without restraints) Performing minimization step: 2170. Total energy = 3389.6491 kcal/mol (3382.7023 without restraints) Performing minimization step: 2171. Total energy = 3389.4747 kcal/mol (3382.5297 without restraints) Performing minimization step: 2172. Total energy = 3389.3004 kcal/mol (3382.3575 without restraints) Performing minimization step: 2173. Total energy = 3389.1263 kcal/mol (3382.1853 without restraints) Performing minimization step: 2174. Total energy = 3388.9513 kcal/mol (3382.0121 without restraints) Performing minimization step: 2175. Total energy = 3388.7769 kcal/mol (3381.8397 without restraints) Performing minimization step: 2176. Total energy = 3388.6025 kcal/mol (3381.6673 without restraints) Performing minimization step: 2177. Total energy = 3388.4281 kcal/mol (3381.4948 without restraints) Performing minimization step: 2178. Total energy = 3388.2543 kcal/mol (3381.3230 without restraints) Performing minimization step: 2179. Total energy = 3388.0802 kcal/mol (3381.1506 without restraints) Performing minimization step: 2180. Total energy = 3387.9060 kcal/mol (3380.9784 without restraints) Performing minimization step: 2181. Total energy = 3387.7322 kcal/mol (3380.8066 without restraints) Performing minimization step: 2182. Total energy = 3387.5585 kcal/mol (3380.6349 without restraints) Performing minimization step: 2183. Total energy = 3387.3847 kcal/mol (3380.4627 without restraints) Performing minimization step: 2184. Total energy = 3387.2106 kcal/mol (3380.2908 without restraints) Performing minimization step: 2185. Total energy = 3387.0371 kcal/mol (3380.1192 without restraints) Performing minimization step: 2186. Total energy = 3386.8634 kcal/mol (3379.9474 without restraints) Performing minimization step: 2187. Total energy = 3386.6900 kcal/mol (3379.7760 without restraints) Performing minimization step: 2188. Total energy = 3386.5165 kcal/mol (3379.6043 without restraints) Performing minimization step: 2189. Total energy = 3386.3428 kcal/mol (3379.4326 without restraints) Performing minimization step: 2190. Total energy = 3386.1687 kcal/mol (3379.2604 without restraints) Performing minimization step: 2191. Total energy = 3385.9957 kcal/mol (3379.0893 without restraints) Performing minimization step: 2192. Total energy = 3385.8228 kcal/mol (3378.9182 without restraints) Performing minimization step: 2193. Total energy = 3385.6498 kcal/mol (3378.7472 without restraints) Performing minimization step: 2194. Total energy = 3385.4771 kcal/mol (3378.5764 without restraints) Performing minimization step: 2195. Total energy = 3385.3043 kcal/mol (3378.4056 without restraints) Performing minimization step: 2196. Total energy = 3385.1312 kcal/mol (3378.2343 without restraints) Performing minimization step: 2197. Total energy = 3384.9585 kcal/mol (3378.0636 without restraints) Performing minimization step: 2198. Total energy = 3384.7859 kcal/mol (3377.8928 without restraints) Performing minimization step: 2199. Total energy = 3384.6130 kcal/mol (3377.7219 without restraints) Performing minimization step: 2200. Total energy = 3384.4404 kcal/mol (3377.5513 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 3384.2682 kcal/mol (3377.3809 without restraints) Performing minimization step: 2202. Total energy = 3384.0959 kcal/mol (3377.2105 without restraints) Performing minimization step: 2203. Total energy = 3383.9236 kcal/mol (3377.0400 without restraints) Performing minimization step: 2204. Total energy = 3383.7511 kcal/mol (3376.8694 without restraints) Performing minimization step: 2205. Total energy = 3383.5785 kcal/mol (3376.6986 without restraints) Performing minimization step: 2206. Total energy = 3383.4061 kcal/mol (3376.5283 without restraints) Performing minimization step: 2207. Total energy = 3383.2340 kcal/mol (3376.3581 without restraints) Performing minimization step: 2208. Total energy = 3383.0612 kcal/mol (3376.1871 without restraints) Performing minimization step: 2209. Total energy = 3382.8889 kcal/mol (3376.0166 without restraints) Performing minimization step: 2210. Total energy = 3382.7172 kcal/mol (3375.8470 without restraints) Performing minimization step: 2211. Total energy = 3382.5452 kcal/mol (3375.6769 without restraints) Performing minimization step: 2212. Total energy = 3382.3738 kcal/mol (3375.5073 without restraints) Performing minimization step: 2213. Total energy = 3382.2023 kcal/mol (3375.3377 without restraints) Performing minimization step: 2214. Total energy = 3382.0301 kcal/mol (3375.1674 without restraints) Performing minimization step: 2215. Total energy = 3381.8580 kcal/mol (3374.9972 without restraints) Performing minimization step: 2216. Total energy = 3381.6869 kcal/mol (3374.8279 without restraints) Performing minimization step: 2217. Total energy = 3381.5156 kcal/mol (3374.6585 without restraints) Performing minimization step: 2218. Total energy = 3381.3445 kcal/mol (3374.4894 without restraints) Performing minimization step: 2219. Total energy = 3381.1731 kcal/mol (3374.3198 without restraints) Performing minimization step: 2220. Total energy = 3381.0018 kcal/mol (3374.1504 without restraints) Performing minimization step: 2221. Total energy = 3380.8306 kcal/mol (3373.9811 without restraints) Performing minimization step: 2222. Total energy = 3380.6597 kcal/mol (3373.8121 without restraints) Performing minimization step: 2223. Total energy = 3380.4891 kcal/mol (3373.6433 without restraints) Performing minimization step: 2224. Total energy = 3380.3180 kcal/mol (3373.4741 without restraints) Performing minimization step: 2225. Total energy = 3380.1474 kcal/mol (3373.3055 without restraints) Performing minimization step: 2226. Total energy = 3379.9768 kcal/mol (3373.1367 without restraints) Performing minimization step: 2227. Total energy = 3379.8064 kcal/mol (3372.9682 without restraints) Performing minimization step: 2228. Total energy = 3379.6359 kcal/mol (3372.7995 without restraints) Performing minimization step: 2229. Total energy = 3379.4650 kcal/mol (3372.6305 without restraints) Performing minimization step: 2230. Total energy = 3379.2946 kcal/mol (3372.4619 without restraints) Performing minimization step: 2231. Total energy = 3379.1243 kcal/mol (3372.2935 without restraints) Performing minimization step: 2232. Total energy = 3378.9540 kcal/mol (3372.1251 without restraints) Performing minimization step: 2233. Total energy = 3378.7839 kcal/mol (3371.9570 without restraints) Performing minimization step: 2234. Total energy = 3378.6138 kcal/mol (3371.7886 without restraints) Performing minimization step: 2235. Total energy = 3378.4433 kcal/mol (3371.6200 without restraints) Performing minimization step: 2236. Total energy = 3378.2732 kcal/mol (3371.4518 without restraints) Performing minimization step: 2237. Total energy = 3378.1032 kcal/mol (3371.2835 without restraints) Performing minimization step: 2238. Total energy = 3377.9332 kcal/mol (3371.1155 without restraints) Performing minimization step: 2239. Total energy = 3377.7635 kcal/mol (3370.9476 without restraints) Performing minimization step: 2240. Total energy = 3377.5937 kcal/mol (3370.7798 without restraints) Performing minimization step: 2241. Total energy = 3377.4235 kcal/mol (3370.6114 without restraints) Performing minimization step: 2242. Total energy = 3377.2540 kcal/mol (3370.4437 without restraints) Performing minimization step: 2243. Total energy = 3377.0844 kcal/mol (3370.2762 without restraints) Performing minimization step: 2244. Total energy = 3376.9151 kcal/mol (3370.1086 without restraints) Performing minimization step: 2245. Total energy = 3376.7459 kcal/mol (3369.9412 without restraints) Performing minimization step: 2246. Total energy = 3376.5767 kcal/mol (3369.7738 without restraints) Performing minimization step: 2247. Total energy = 3376.4070 kcal/mol (3369.6061 without restraints) Performing minimization step: 2248. Total energy = 3376.2377 kcal/mol (3369.4386 without restraints) Performing minimization step: 2249. Total energy = 3376.0688 kcal/mol (3369.2715 without restraints) Performing minimization step: 2250. Total energy = 3375.8996 kcal/mol (3369.1042 without restraints) Performing minimization step: 2251. Total energy = 3375.7304 kcal/mol (3368.9368 without restraints) Performing minimization step: 2252. Total energy = 3375.5615 kcal/mol (3368.7698 without restraints) Performing minimization step: 2253. Total energy = 3375.3930 kcal/mol (3368.6032 without restraints) Performing minimization step: 2254. Total energy = 3375.2243 kcal/mol (3368.4363 without restraints) Performing minimization step: 2255. Total energy = 3375.0557 kcal/mol (3368.2695 without restraints) Performing minimization step: 2256. Total energy = 3374.8870 kcal/mol (3368.1025 without restraints) Performing minimization step: 2257. Total energy = 3374.7184 kcal/mol (3367.9359 without restraints) Performing minimization step: 2258. Total energy = 3374.5500 kcal/mol (3367.7693 without restraints) Performing minimization step: 2259. Total energy = 3374.3812 kcal/mol (3367.6024 without restraints) Performing minimization step: 2260. Total energy = 3374.2123 kcal/mol (3367.4353 without restraints) Performing minimization step: 2261. Total energy = 3374.0438 kcal/mol (3367.2686 without restraints) Performing minimization step: 2262. Total energy = 3373.8755 kcal/mol (3367.1021 without restraints) Performing minimization step: 2263. Total energy = 3373.7076 kcal/mol (3366.9362 without restraints) Performing minimization step: 2264. Total energy = 3373.5399 kcal/mol (3366.7703 without restraints) Performing minimization step: 2265. Total energy = 3373.3719 kcal/mol (3366.6041 without restraints) Performing minimization step: 2266. Total energy = 3373.2042 kcal/mol (3366.4384 without restraints) Performing minimization step: 2267. Total energy = 3373.0363 kcal/mol (3366.2723 without restraints) Performing minimization step: 2268. Total energy = 3372.8687 kcal/mol (3366.1065 without restraints) Performing minimization step: 2269. Total energy = 3372.7009 kcal/mol (3365.9405 without restraints) Performing minimization step: 2270. Total energy = 3372.5331 kcal/mol (3365.7745 without restraints) Performing minimization step: 2271. Total energy = 3372.3654 kcal/mol (3365.6086 without restraints) Performing minimization step: 2272. Total energy = 3372.1980 kcal/mol (3365.4431 without restraints) Performing minimization step: 2273. Total energy = 3372.0306 kcal/mol (3365.2775 without restraints) Performing minimization step: 2274. Total energy = 3371.8633 kcal/mol (3365.1120 without restraints) Performing minimization step: 2275. Total energy = 3371.6961 kcal/mol (3364.9466 without restraints) Performing minimization step: 2276. Total energy = 3371.5286 kcal/mol (3364.7810 without restraints) Performing minimization step: 2277. Total energy = 3371.3616 kcal/mol (3364.6158 without restraints) Performing minimization step: 2278. Total energy = 3371.1943 kcal/mol (3364.4502 without restraints) Performing minimization step: 2279. Total energy = 3371.0269 kcal/mol (3364.2847 without restraints) Performing minimization step: 2280. Total energy = 3370.8599 kcal/mol (3364.1196 without restraints) Performing minimization step: 2281. Total energy = 3370.6932 kcal/mol (3363.9547 without restraints) Performing minimization step: 2282. Total energy = 3370.5265 kcal/mol (3363.7898 without restraints) Performing minimization step: 2283. Total energy = 3370.3599 kcal/mol (3363.6251 without restraints) Performing minimization step: 2284. Total energy = 3370.1933 kcal/mol (3363.4605 without restraints) Performing minimization step: 2285. Total energy = 3370.0269 kcal/mol (3363.2957 without restraints) Performing minimization step: 2286. Total energy = 3369.8603 kcal/mol (3363.1309 without restraints) Performing minimization step: 2287. Total energy = 3369.6943 kcal/mol (3362.9666 without restraints) Performing minimization step: 2288. Total energy = 3369.5276 kcal/mol (3362.8019 without restraints) Performing minimization step: 2289. Total energy = 3369.3613 kcal/mol (3362.6373 without restraints) Performing minimization step: 2290. Total energy = 3369.1955 kcal/mol (3362.4734 without restraints) Performing minimization step: 2291. Total energy = 3369.0296 kcal/mol (3362.3092 without restraints) Performing minimization step: 2292. Total energy = 3368.8634 kcal/mol (3362.1449 without restraints) Performing minimization step: 2293. Total energy = 3368.6975 kcal/mol (3361.9808 without restraints) Performing minimization step: 2294. Total energy = 3368.5315 kcal/mol (3361.8166 without restraints) Performing minimization step: 2295. Total energy = 3368.3659 kcal/mol (3361.6529 without restraints) Performing minimization step: 2296. Total energy = 3368.2000 kcal/mol (3361.4885 without restraints) Performing minimization step: 2297. Total energy = 3368.0342 kcal/mol (3361.3248 without restraints) Performing minimization step: 2298. Total energy = 3367.8687 kcal/mol (3361.1610 without restraints) Performing minimization step: 2299. Total energy = 3367.7035 kcal/mol (3360.9976 without restraints) Performing minimization step: 2300. Total energy = 3367.5388 kcal/mol (3360.8347 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 3367.3737 kcal/mol (3360.6714 without restraints) Performing minimization step: 2302. Total energy = 3367.2083 kcal/mol (3360.5079 without restraints) Performing minimization step: 2303. Total energy = 3367.0431 kcal/mol (3360.3443 without restraints) Performing minimization step: 2304. Total energy = 3366.8777 kcal/mol (3360.1809 without restraints) Performing minimization step: 2305. Total energy = 3366.7127 kcal/mol (3360.0176 without restraints) Performing minimization step: 2306. Total energy = 3366.5482 kcal/mol (3359.8549 without restraints) Performing minimization step: 2307. Total energy = 3366.3828 kcal/mol (3359.6912 without restraints) Performing minimization step: 2308. Total energy = 3366.2179 kcal/mol (3359.5282 without restraints) Performing minimization step: 2309. Total energy = 3366.0532 kcal/mol (3359.3653 without restraints) Performing minimization step: 2310. Total energy = 3365.8884 kcal/mol (3359.2023 without restraints) Performing minimization step: 2311. Total energy = 3365.7234 kcal/mol (3359.0391 without restraints) Performing minimization step: 2312. Total energy = 3365.5588 kcal/mol (3358.8761 without restraints) Performing minimization step: 2313. Total energy = 3365.3941 kcal/mol (3358.7133 without restraints) Performing minimization step: 2314. Total energy = 3365.2298 kcal/mol (3358.5509 without restraints) Performing minimization step: 2315. Total energy = 3365.0653 kcal/mol (3358.3882 without restraints) Performing minimization step: 2316. Total energy = 3364.9011 kcal/mol (3358.2257 without restraints) Performing minimization step: 2317. Total energy = 3364.7368 kcal/mol (3358.0633 without restraints) Performing minimization step: 2318. Total energy = 3364.5728 kcal/mol (3357.9011 without restraints) Performing minimization step: 2319. Total energy = 3364.4087 kcal/mol (3357.7387 without restraints) Performing minimization step: 2320. Total energy = 3364.2447 kcal/mol (3357.5765 without restraints) Performing minimization step: 2321. Total energy = 3364.0806 kcal/mol (3357.4142 without restraints) Performing minimization step: 2322. Total energy = 3363.9172 kcal/mol (3357.2525 without restraints) Performing minimization step: 2323. Total energy = 3363.7534 kcal/mol (3357.0907 without restraints) Performing minimization step: 2324. Total energy = 3363.5896 kcal/mol (3356.9285 without restraints) Performing minimization step: 2325. Total energy = 3363.4260 kcal/mol (3356.7667 without restraints) Performing minimization step: 2326. Total energy = 3363.2626 kcal/mol (3356.6050 without restraints) Performing minimization step: 2327. Total energy = 3363.0988 kcal/mol (3356.4431 without restraints) Performing minimization step: 2328. Total energy = 3362.9356 kcal/mol (3356.2817 without restraints) Performing minimization step: 2329. Total energy = 3362.7725 kcal/mol (3356.1203 without restraints) Performing minimization step: 2330. Total energy = 3362.6093 kcal/mol (3355.9588 without restraints) Performing minimization step: 2331. Total energy = 3362.4461 kcal/mol (3355.7974 without restraints) Performing minimization step: 2332. Total energy = 3362.2829 kcal/mol (3355.6359 without restraints) Performing minimization step: 2333. Total energy = 3362.1199 kcal/mol (3355.4748 without restraints) Performing minimization step: 2334. Total energy = 3361.9569 kcal/mol (3355.3136 without restraints) Performing minimization step: 2335. Total energy = 3361.7940 kcal/mol (3355.1525 without restraints) Performing minimization step: 2336. Total energy = 3361.6310 kcal/mol (3354.9911 without restraints) Performing minimization step: 2337. Total energy = 3361.4684 kcal/mol (3354.8304 without restraints) Performing minimization step: 2338. Total energy = 3361.3055 kcal/mol (3354.6691 without restraints) Performing minimization step: 2339. Total energy = 3361.1427 kcal/mol (3354.5082 without restraints) Performing minimization step: 2340. Total energy = 3360.9805 kcal/mol (3354.3477 without restraints) Performing minimization step: 2341. Total energy = 3360.8180 kcal/mol (3354.1871 without restraints) Performing minimization step: 2342. Total energy = 3360.6556 kcal/mol (3354.0265 without restraints) Performing minimization step: 2343. Total energy = 3360.4936 kcal/mol (3353.8662 without restraints) Performing minimization step: 2344. Total energy = 3360.3312 kcal/mol (3353.7055 without restraints) Performing minimization step: 2345. Total energy = 3360.1689 kcal/mol (3353.5450 without restraints) Performing minimization step: 2346. Total energy = 3360.0073 kcal/mol (3353.3851 without restraints) Performing minimization step: 2347. Total energy = 3359.8451 kcal/mol (3353.2247 without restraints) Performing minimization step: 2348. Total energy = 3359.6830 kcal/mol (3353.0643 without restraints) Performing minimization step: 2349. Total energy = 3359.5212 kcal/mol (3352.9043 without restraints) Performing minimization step: 2350. Total energy = 3359.3594 kcal/mol (3352.7442 without restraints) Performing minimization step: 2351. Total energy = 3359.1974 kcal/mol (3352.5840 without restraints) Performing minimization step: 2352. Total energy = 3359.0358 kcal/mol (3352.4242 without restraints) Performing minimization step: 2353. Total energy = 3358.8746 kcal/mol (3352.2647 without restraints) Performing minimization step: 2354. Total energy = 3358.7129 kcal/mol (3352.1048 without restraints) Performing minimization step: 2355. Total energy = 3358.5513 kcal/mol (3351.9449 without restraints) Performing minimization step: 2356. Total energy = 3358.3898 kcal/mol (3351.7852 without restraints) Performing minimization step: 2357. Total energy = 3358.2282 kcal/mol (3351.6253 without restraints) Performing minimization step: 2358. Total energy = 3358.0673 kcal/mol (3351.4662 without restraints) Performing minimization step: 2359. Total energy = 3357.9062 kcal/mol (3351.3069 without restraints) Performing minimization step: 2360. Total energy = 3357.7451 kcal/mol (3351.1475 without restraints) Performing minimization step: 2361. Total energy = 3357.5842 kcal/mol (3350.9885 without restraints) Performing minimization step: 2362. Total energy = 3357.4235 kcal/mol (3350.8295 without restraints) Performing minimization step: 2363. Total energy = 3357.2629 kcal/mol (3350.6705 without restraints) Performing minimization step: 2364. Total energy = 3357.1020 kcal/mol (3350.5114 without restraints) Performing minimization step: 2365. Total energy = 3356.9409 kcal/mol (3350.3520 without restraints) Performing minimization step: 2366. Total energy = 3356.7802 kcal/mol (3350.1930 without restraints) Performing minimization step: 2367. Total energy = 3356.6195 kcal/mol (3350.0340 without restraints) Performing minimization step: 2368. Total energy = 3356.4588 kcal/mol (3349.8750 without restraints) Performing minimization step: 2369. Total energy = 3356.2984 kcal/mol (3349.7164 without restraints) Performing minimization step: 2370. Total energy = 3356.1380 kcal/mol (3349.5579 without restraints) Performing minimization step: 2371. Total energy = 3355.9773 kcal/mol (3349.3989 without restraints) Performing minimization step: 2372. Total energy = 3355.8172 kcal/mol (3349.2405 without restraints) Performing minimization step: 2373. Total energy = 3355.6572 kcal/mol (3349.0822 without restraints) Performing minimization step: 2374. Total energy = 3355.4967 kcal/mol (3348.9235 without restraints) Performing minimization step: 2375. Total energy = 3355.3362 kcal/mol (3348.7647 without restraints) Performing minimization step: 2376. Total energy = 3355.1760 kcal/mol (3348.6063 without restraints) Performing minimization step: 2377. Total energy = 3355.0163 kcal/mol (3348.4482 without restraints) Performing minimization step: 2378. Total energy = 3354.8560 kcal/mol (3348.2898 without restraints) Performing minimization step: 2379. Total energy = 3354.6964 kcal/mol (3348.1318 without restraints) Performing minimization step: 2380. Total energy = 3354.5368 kcal/mol (3347.9739 without restraints) Performing minimization step: 2381. Total energy = 3354.3770 kcal/mol (3347.8159 without restraints) Performing minimization step: 2382. Total energy = 3354.2175 kcal/mol (3347.6581 without restraints) Performing minimization step: 2383. Total energy = 3354.0576 kcal/mol (3347.5000 without restraints) Performing minimization step: 2384. Total energy = 3353.8983 kcal/mol (3347.3424 without restraints) Performing minimization step: 2385. Total energy = 3353.7392 kcal/mol (3347.1852 without restraints) Performing minimization step: 2386. Total energy = 3353.5807 kcal/mol (3347.0282 without restraints) Performing minimization step: 2387. Total energy = 3353.4215 kcal/mol (3346.8707 without restraints) Performing minimization step: 2388. Total energy = 3353.2627 kcal/mol (3346.7137 without restraints) Performing minimization step: 2389. Total energy = 3353.1039 kcal/mol (3346.5564 without restraints) Performing minimization step: 2390. Total energy = 3352.9449 kcal/mol (3346.3993 without restraints) Performing minimization step: 2391. Total energy = 3352.7857 kcal/mol (3346.2418 without restraints) Performing minimization step: 2392. Total energy = 3352.6267 kcal/mol (3346.0845 without restraints) Performing minimization step: 2393. Total energy = 3352.4680 kcal/mol (3345.9275 without restraints) Performing minimization step: 2394. Total energy = 3352.3094 kcal/mol (3345.7707 without restraints) Performing minimization step: 2395. Total energy = 3352.1509 kcal/mol (3345.6139 without restraints) Performing minimization step: 2396. Total energy = 3351.9922 kcal/mol (3345.4569 without restraints) Performing minimization step: 2397. Total energy = 3351.8340 kcal/mol (3345.3005 without restraints) Performing minimization step: 2398. Total energy = 3351.6758 kcal/mol (3345.1440 without restraints) Performing minimization step: 2399. Total energy = 3351.5175 kcal/mol (3344.9875 without restraints) Performing minimization step: 2400. Total energy = 3351.3595 kcal/mol (3344.8311 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 3351.2014 kcal/mol (3344.6748 without restraints) Performing minimization step: 2402. Total energy = 3351.0436 kcal/mol (3344.5187 without restraints) Performing minimization step: 2403. Total energy = 3350.8855 kcal/mol (3344.3621 without restraints) Performing minimization step: 2404. Total energy = 3350.7274 kcal/mol (3344.2058 without restraints) Performing minimization step: 2405. Total energy = 3350.5694 kcal/mol (3344.0494 without restraints) Performing minimization step: 2406. Total energy = 3350.4117 kcal/mol (3343.8934 without restraints) Performing minimization step: 2407. Total energy = 3350.2540 kcal/mol (3343.7376 without restraints) Performing minimization step: 2408. Total energy = 3350.0967 kcal/mol (3343.5820 without restraints) Performing minimization step: 2409. Total energy = 3349.9397 kcal/mol (3343.4266 without restraints) Performing minimization step: 2410. Total energy = 3349.7823 kcal/mol (3343.2710 without restraints) Performing minimization step: 2411. Total energy = 3349.6248 kcal/mol (3343.1152 without restraints) Performing minimization step: 2412. Total energy = 3349.4675 kcal/mol (3342.9598 without restraints) Performing minimization step: 2413. Total energy = 3349.3105 kcal/mol (3342.8042 without restraints) Performing minimization step: 2414. Total energy = 3349.1535 kcal/mol (3342.6490 without restraints) Performing minimization step: 2415. Total energy = 3348.9964 kcal/mol (3342.4935 without restraints) Performing minimization step: 2416. Total energy = 3348.8396 kcal/mol (3342.3385 without restraints) Performing minimization step: 2417. Total energy = 3348.6830 kcal/mol (3342.1836 without restraints) Performing minimization step: 2418. Total energy = 3348.5263 kcal/mol (3342.0286 without restraints) Performing minimization step: 2419. Total energy = 3348.3697 kcal/mol (3341.8737 without restraints) Performing minimization step: 2420. Total energy = 3348.2131 kcal/mol (3341.7188 without restraints) Performing minimization step: 2421. Total energy = 3348.0565 kcal/mol (3341.5638 without restraints) Performing minimization step: 2422. Total energy = 3347.8996 kcal/mol (3341.4087 without restraints) Performing minimization step: 2423. Total energy = 3347.7432 kcal/mol (3341.2539 without restraints) Performing minimization step: 2424. Total energy = 3347.5866 kcal/mol (3341.0990 without restraints) Performing minimization step: 2425. Total energy = 3347.4304 kcal/mol (3340.9446 without restraints) Performing minimization step: 2426. Total energy = 3347.2740 kcal/mol (3340.7899 without restraints) Performing minimization step: 2427. Total energy = 3347.1181 kcal/mol (3340.6357 without restraints) Performing minimization step: 2428. Total energy = 3346.9620 kcal/mol (3340.4813 without restraints) Performing minimization step: 2429. Total energy = 3346.8052 kcal/mol (3340.3260 without restraints) Performing minimization step: 2430. Total energy = 3346.6491 kcal/mol (3340.1717 without restraints) Performing minimization step: 2431. Total energy = 3346.4932 kcal/mol (3340.0175 without restraints) Performing minimization step: 2432. Total energy = 3346.3373 kcal/mol (3339.8631 without restraints) Performing minimization step: 2433. Total energy = 3346.1814 kcal/mol (3339.7090 without restraints) Performing minimization step: 2434. Total energy = 3346.0256 kcal/mol (3339.5548 without restraints) Performing minimization step: 2435. Total energy = 3345.8697 kcal/mol (3339.4008 without restraints) Performing minimization step: 2436. Total energy = 3345.7144 kcal/mol (3339.2471 without restraints) Performing minimization step: 2437. Total energy = 3345.5592 kcal/mol (3339.0938 without restraints) Performing minimization step: 2438. Total energy = 3345.4039 kcal/mol (3338.9399 without restraints) Performing minimization step: 2439. Total energy = 3345.2490 kcal/mol (3338.7868 without restraints) Performing minimization step: 2440. Total energy = 3345.0937 kcal/mol (3338.6330 without restraints) Performing minimization step: 2441. Total energy = 3344.9385 kcal/mol (3338.4797 without restraints) Performing minimization step: 2442. Total energy = 3344.7834 kcal/mol (3338.3262 without restraints) Performing minimization step: 2443. Total energy = 3344.6290 kcal/mol (3338.1734 without restraints) Performing minimization step: 2444. Total energy = 3344.4743 kcal/mol (3338.0204 without restraints) Performing minimization step: 2445. Total energy = 3344.3192 kcal/mol (3337.8670 without restraints) Performing minimization step: 2446. Total energy = 3344.1644 kcal/mol (3337.7138 without restraints) Performing minimization step: 2447. Total energy = 3344.0096 kcal/mol (3337.5608 without restraints) Performing minimization step: 2448. Total energy = 3343.8547 kcal/mol (3337.4075 without restraints) Performing minimization step: 2449. Total energy = 3343.6998 kcal/mol (3337.2544 without restraints) Performing minimization step: 2450. Total energy = 3343.5454 kcal/mol (3337.1015 without restraints) Performing minimization step: 2451. Total energy = 3343.3908 kcal/mol (3336.9487 without restraints) Performing minimization step: 2452. Total energy = 3343.2364 kcal/mol (3336.7959 without restraints) Performing minimization step: 2453. Total energy = 3343.0816 kcal/mol (3336.6428 without restraints) Performing minimization step: 2454. Total energy = 3342.9274 kcal/mol (3336.4903 without restraints) Performing minimization step: 2455. Total energy = 3342.7730 kcal/mol (3336.3376 without restraints) Performing minimization step: 2456. Total energy = 3342.6190 kcal/mol (3336.1852 without restraints) Performing minimization step: 2457. Total energy = 3342.4650 kcal/mol (3336.0328 without restraints) Performing minimization step: 2458. Total energy = 3342.3110 kcal/mol (3335.8805 without restraints) Performing minimization step: 2459. Total energy = 3342.1575 kcal/mol (3335.7287 without restraints) Performing minimization step: 2460. Total energy = 3342.0034 kcal/mol (3335.5763 without restraints) Performing minimization step: 2461. Total energy = 3341.8495 kcal/mol (3335.4240 without restraints) Performing minimization step: 2462. Total energy = 3341.6954 kcal/mol (3335.2715 without restraints) Performing minimization step: 2463. Total energy = 3341.5420 kcal/mol (3335.1198 without restraints) Performing minimization step: 2464. Total energy = 3341.3879 kcal/mol (3334.9670 without restraints) Performing minimization step: 2465. Total energy = 3341.2343 kcal/mol (3334.8154 without restraints) Performing minimization step: 2466. Total energy = 3341.0809 kcal/mol (3334.6637 without restraints) Performing minimization step: 2467. Total energy = 3340.9280 kcal/mol (3334.5126 without restraints) Performing minimization step: 2468. Total energy = 3340.7748 kcal/mol (3334.3609 without restraints) Performing minimization step: 2469. Total energy = 3340.6216 kcal/mol (3334.2094 without restraints) Performing minimization step: 2470. Total energy = 3340.4682 kcal/mol (3334.0576 without restraints) Performing minimization step: 2471. Total energy = 3340.3145 kcal/mol (3333.9056 without restraints) Performing minimization step: 2472. Total energy = 3340.1613 kcal/mol (3333.7540 without restraints) Performing minimization step: 2473. Total energy = 3340.0080 kcal/mol (3333.6024 without restraints) Performing minimization step: 2474. Total energy = 3339.8551 kcal/mol (3333.4510 without restraints) Performing minimization step: 2475. Total energy = 3339.7022 kcal/mol (3333.2999 without restraints) Performing minimization step: 2476. Total energy = 3339.5495 kcal/mol (3333.1489 without restraints) Performing minimization step: 2477. Total energy = 3339.3964 kcal/mol (3332.9974 without restraints) Performing minimization step: 2478. Total energy = 3339.2442 kcal/mol (3332.8469 without restraints) Performing minimization step: 2479. Total energy = 3339.0918 kcal/mol (3332.6960 without restraints) Performing minimization step: 2480. Total energy = 3338.9390 kcal/mol (3332.5449 without restraints) Performing minimization step: 2481. Total energy = 3338.7869 kcal/mol (3332.3943 without restraints) Performing minimization step: 2482. Total energy = 3338.6347 kcal/mol (3332.2440 without restraints) Performing minimization step: 2483. Total energy = 3338.4826 kcal/mol (3332.0935 without restraints) Performing minimization step: 2484. Total energy = 3338.3305 kcal/mol (3331.9430 without restraints) Performing minimization step: 2485. Total energy = 3338.1785 kcal/mol (3331.7927 without restraints) Performing minimization step: 2486. Total energy = 3338.0261 kcal/mol (3331.6418 without restraints) Performing minimization step: 2487. Total energy = 3337.8738 kcal/mol (3331.4911 without restraints) Performing minimization step: 2488. Total energy = 3337.7219 kcal/mol (3331.3410 without restraints) Performing minimization step: 2489. Total energy = 3337.5701 kcal/mol (3331.1908 without restraints) Performing minimization step: 2490. Total energy = 3337.4181 kcal/mol (3331.0404 without restraints) Performing minimization step: 2491. Total energy = 3337.2662 kcal/mol (3330.8902 without restraints) Performing minimization step: 2492. Total energy = 3337.1146 kcal/mol (3330.7402 without restraints) Performing minimization step: 2493. Total energy = 3336.9630 kcal/mol (3330.5903 without restraints) Performing minimization step: 2494. Total energy = 3336.8118 kcal/mol (3330.4406 without restraints) Performing minimization step: 2495. Total energy = 3336.6603 kcal/mol (3330.2908 without restraints) Performing minimization step: 2496. Total energy = 3336.5088 kcal/mol (3330.1410 without restraints) Performing minimization step: 2497. Total energy = 3336.3574 kcal/mol (3329.9911 without restraints) Performing minimization step: 2498. Total energy = 3336.2059 kcal/mol (3329.8413 without restraints) Performing minimization step: 2499. Total energy = 3336.0545 kcal/mol (3329.6915 without restraints) Performing minimization step: 2500. Total energy = 3335.9034 kcal/mol (3329.5420 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 3335.7522 kcal/mol (3329.3924 without restraints) Performing minimization step: 2502. Total energy = 3335.6010 kcal/mol (3329.2429 without restraints) Performing minimization step: 2503. Total energy = 3335.4500 kcal/mol (3329.0935 without restraints) Performing minimization step: 2504. Total energy = 3335.2994 kcal/mol (3328.9445 without restraints) Performing minimization step: 2505. Total energy = 3335.1490 kcal/mol (3328.7959 without restraints) Performing minimization step: 2506. Total energy = 3334.9977 kcal/mol (3328.6461 without restraints) Performing minimization step: 2507. Total energy = 3334.8474 kcal/mol (3328.4974 without restraints) Performing minimization step: 2508. Total energy = 3334.6973 kcal/mol (3328.3490 without restraints) Performing minimization step: 2509. Total energy = 3334.5470 kcal/mol (3328.2003 without restraints) Performing minimization step: 2510. Total energy = 3334.3960 kcal/mol (3328.0509 without restraints) Performing minimization step: 2511. Total energy = 3334.2458 kcal/mol (3327.9026 without restraints) Performing minimization step: 2512. Total energy = 3334.0957 kcal/mol (3327.7539 without restraints) Performing minimization step: 2513. Total energy = 3333.9456 kcal/mol (3327.6054 without restraints) Performing minimization step: 2514. Total energy = 3333.7955 kcal/mol (3327.4569 without restraints) Performing minimization step: 2515. Total energy = 3333.6454 kcal/mol (3327.3084 without restraints) Performing minimization step: 2516. Total energy = 3333.4954 kcal/mol (3327.1600 without restraints) Performing minimization step: 2517. Total energy = 3333.3452 kcal/mol (3327.0114 without restraints) Performing minimization step: 2518. Total energy = 3333.1954 kcal/mol (3326.8632 without restraints) Performing minimization step: 2519. Total energy = 3333.0456 kcal/mol (3326.7151 without restraints) Performing minimization step: 2520. Total energy = 3332.8960 kcal/mol (3326.5673 without restraints) Performing minimization step: 2521. Total energy = 3332.7464 kcal/mol (3326.4190 without restraints) Performing minimization step: 2522. Total energy = 3332.5967 kcal/mol (3326.2710 without restraints) Performing minimization step: 2523. Total energy = 3332.4470 kcal/mol (3326.1230 without restraints) Performing minimization step: 2524. Total energy = 3332.2974 kcal/mol (3325.9750 without restraints) Performing minimization step: 2525. Total energy = 3332.1478 kcal/mol (3325.8269 without restraints) Performing minimization step: 2526. Total energy = 3331.9983 kcal/mol (3325.6790 without restraints) Performing minimization step: 2527. Total energy = 3331.8490 kcal/mol (3325.5314 without restraints) Performing minimization step: 2528. Total energy = 3331.6997 kcal/mol (3325.3836 without restraints) Performing minimization step: 2529. Total energy = 3331.5506 kcal/mol (3325.2363 without restraints) Performing minimization step: 2530. Total energy = 3331.4019 kcal/mol (3325.0895 without restraints) Performing minimization step: 2531. Total energy = 3331.2534 kcal/mol (3324.9422 without restraints) Performing minimization step: 2532. Total energy = 3331.1045 kcal/mol (3324.7949 without restraints) Performing minimization step: 2533. Total energy = 3330.9557 kcal/mol (3324.6477 without restraints) Performing minimization step: 2534. Total energy = 3330.8066 kcal/mol (3324.5003 without restraints) Performing minimization step: 2535. Total energy = 3330.6576 kcal/mol (3324.3527 without restraints) Performing minimization step: 2536. Total energy = 3330.5088 kcal/mol (3324.2057 without restraints) Performing minimization step: 2537. Total energy = 3330.3599 kcal/mol (3324.0582 without restraints) Performing minimization step: 2538. Total energy = 3330.2117 kcal/mol (3323.9115 without restraints) Performing minimization step: 2539. Total energy = 3330.0634 kcal/mol (3323.7650 without restraints) Performing minimization step: 2540. Total energy = 3329.9147 kcal/mol (3323.6178 without restraints) Performing minimization step: 2541. Total energy = 3329.7664 kcal/mol (3323.4712 without restraints) Performing minimization step: 2542. Total energy = 3329.6177 kcal/mol (3323.3241 without restraints) Performing minimization step: 2543. Total energy = 3329.4696 kcal/mol (3323.1776 without restraints) Performing minimization step: 2544. Total energy = 3329.3216 kcal/mol (3323.0313 without restraints) Performing minimization step: 2545. Total energy = 3329.1737 kcal/mol (3322.8848 without restraints) Performing minimization step: 2546. Total energy = 3329.0254 kcal/mol (3322.7382 without restraints) Performing minimization step: 2547. Total energy = 3328.8777 kcal/mol (3322.5920 without restraints) Performing minimization step: 2548. Total energy = 3328.7296 kcal/mol (3322.4457 without restraints) Performing minimization step: 2549. Total energy = 3328.5819 kcal/mol (3322.2995 without restraints) Performing minimization step: 2550. Total energy = 3328.4343 kcal/mol (3322.1535 without restraints) Performing minimization step: 2551. Total energy = 3328.2864 kcal/mol (3322.0070 without restraints) Performing minimization step: 2552. Total energy = 3328.1385 kcal/mol (3321.8608 without restraints) Performing minimization step: 2553. Total energy = 3327.9912 kcal/mol (3321.7151 without restraints) Performing minimization step: 2554. Total energy = 3327.8436 kcal/mol (3321.5690 without restraints) Performing minimization step: 2555. Total energy = 3327.6961 kcal/mol (3321.4232 without restraints) Performing minimization step: 2556. Total energy = 3327.5489 kcal/mol (3321.2774 without restraints) Performing minimization step: 2557. Total energy = 3327.4019 kcal/mol (3321.1321 without restraints) Performing minimization step: 2558. Total energy = 3327.2546 kcal/mol (3320.9863 without restraints) Performing minimization step: 2559. Total energy = 3327.1075 kcal/mol (3320.8409 without restraints) Performing minimization step: 2560. Total energy = 3326.9605 kcal/mol (3320.6954 without restraints) Performing minimization step: 2561. Total energy = 3326.8136 kcal/mol (3320.5501 without restraints) Performing minimization step: 2562. Total energy = 3326.6668 kcal/mol (3320.4050 without restraints) Performing minimization step: 2563. Total energy = 3326.5202 kcal/mol (3320.2600 without restraints) Performing minimization step: 2564. Total energy = 3326.3732 kcal/mol (3320.1145 without restraints) Performing minimization step: 2565. Total energy = 3326.2263 kcal/mol (3319.9691 without restraints) Performing minimization step: 2566. Total energy = 3326.0793 kcal/mol (3319.8238 without restraints) Performing minimization step: 2567. Total energy = 3325.9324 kcal/mol (3319.6784 without restraints) Performing minimization step: 2568. Total energy = 3325.7860 kcal/mol (3319.5336 without restraints) Performing minimization step: 2569. Total energy = 3325.6394 kcal/mol (3319.3885 without restraints) Performing minimization step: 2570. Total energy = 3325.4931 kcal/mol (3319.2438 without restraints) Performing minimization step: 2571. Total energy = 3325.3467 kcal/mol (3319.0990 without restraints) Performing minimization step: 2572. Total energy = 3325.2001 kcal/mol (3318.9541 without restraints) Performing minimization step: 2573. Total energy = 3325.0541 kcal/mol (3318.8096 without restraints) Performing minimization step: 2574. Total energy = 3324.9081 kcal/mol (3318.6651 without restraints) Performing minimization step: 2575. Total energy = 3324.7619 kcal/mol (3318.5204 without restraints) Performing minimization step: 2576. Total energy = 3324.6158 kcal/mol (3318.3760 without restraints) Performing minimization step: 2577. Total energy = 3324.4698 kcal/mol (3318.2316 without restraints) Performing minimization step: 2578. Total energy = 3324.3237 kcal/mol (3318.0871 without restraints) Performing minimization step: 2579. Total energy = 3324.1777 kcal/mol (3317.9426 without restraints) Performing minimization step: 2580. Total energy = 3324.0317 kcal/mol (3317.7982 without restraints) Performing minimization step: 2581. Total energy = 3323.8860 kcal/mol (3317.6540 without restraints) Performing minimization step: 2582. Total energy = 3323.7403 kcal/mol (3317.5099 without restraints) Performing minimization step: 2583. Total energy = 3323.5945 kcal/mol (3317.3656 without restraints) Performing minimization step: 2584. Total energy = 3323.4489 kcal/mol (3317.2216 without restraints) Performing minimization step: 2585. Total energy = 3323.3030 kcal/mol (3317.0772 without restraints) Performing minimization step: 2586. Total energy = 3323.1574 kcal/mol (3316.9332 without restraints) Performing minimization step: 2587. Total energy = 3323.0124 kcal/mol (3316.7898 without restraints) Performing minimization step: 2588. Total energy = 3322.8671 kcal/mol (3316.6460 without restraints) Performing minimization step: 2589. Total energy = 3322.7216 kcal/mol (3316.5021 without restraints) Performing minimization step: 2590. Total energy = 3322.5765 kcal/mol (3316.3586 without restraints) Performing minimization step: 2591. Total energy = 3322.4313 kcal/mol (3316.2149 without restraints) Performing minimization step: 2592. Total energy = 3322.2863 kcal/mol (3316.0715 without restraints) Performing minimization step: 2593. Total energy = 3322.1413 kcal/mol (3315.9279 without restraints) Performing minimization step: 2594. Total energy = 3321.9960 kcal/mol (3315.7842 without restraints) Performing minimization step: 2595. Total energy = 3321.8513 kcal/mol (3315.6411 without restraints) Performing minimization step: 2596. Total energy = 3321.7062 kcal/mol (3315.4975 without restraints) Performing minimization step: 2597. Total energy = 3321.5617 kcal/mol (3315.3549 without restraints) Performing minimization step: 2598. Total energy = 3321.4178 kcal/mol (3315.2123 without restraints) Performing minimization step: 2599. Total energy = 3321.2728 kcal/mol (3315.0686 without restraints) Performing minimization step: 2600. Total energy = 3321.1281 kcal/mol (3314.9257 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 3320.9834 kcal/mol (3314.7826 without restraints) Performing minimization step: 2602. Total energy = 3320.8391 kcal/mol (3314.6398 without restraints) Performing minimization step: 2603. Total energy = 3320.6951 kcal/mol (3314.4975 without restraints) Performing minimization step: 2604. Total energy = 3320.5511 kcal/mol (3314.3549 without restraints) Performing minimization step: 2605. Total energy = 3320.4070 kcal/mol (3314.2125 without restraints) Performing minimization step: 2606. Total energy = 3320.2636 kcal/mol (3314.0706 without restraints) Performing minimization step: 2607. Total energy = 3320.1200 kcal/mol (3313.9284 without restraints) Performing minimization step: 2608. Total energy = 3319.9759 kcal/mol (3313.7859 without restraints) Performing minimization step: 2609. Total energy = 3319.8322 kcal/mol (3313.6437 without restraints) Performing minimization step: 2610. Total energy = 3319.6880 kcal/mol (3313.5010 without restraints) Performing minimization step: 2611. Total energy = 3319.5443 kcal/mol (3313.3589 without restraints) Performing minimization step: 2612. Total energy = 3319.4006 kcal/mol (3313.2168 without restraints) Performing minimization step: 2613. Total energy = 3319.2562 kcal/mol (3313.0739 without restraints) Performing minimization step: 2614. Total energy = 3319.1122 kcal/mol (3312.9314 without restraints) Performing minimization step: 2615. Total energy = 3318.9686 kcal/mol (3312.7894 without restraints) Performing minimization step: 2616. Total energy = 3318.8245 kcal/mol (3312.6468 without restraints) Performing minimization step: 2617. Total energy = 3318.6814 kcal/mol (3312.5052 without restraints) Performing minimization step: 2618. Total energy = 3318.5382 kcal/mol (3312.3636 without restraints) Performing minimization step: 2619. Total energy = 3318.3943 kcal/mol (3312.2211 without restraints) Performing minimization step: 2620. Total energy = 3318.2508 kcal/mol (3312.0791 without restraints) Performing minimization step: 2621. Total energy = 3318.1075 kcal/mol (3311.9374 without restraints) Performing minimization step: 2622. Total energy = 3317.9644 kcal/mol (3311.7959 without restraints) Performing minimization step: 2623. Total energy = 3317.8211 kcal/mol (3311.6541 without restraints) Performing minimization step: 2624. Total energy = 3317.6780 kcal/mol (3311.5126 without restraints) Performing minimization step: 2625. Total energy = 3317.5351 kcal/mol (3311.3712 without restraints) Performing minimization step: 2626. Total energy = 3317.3922 kcal/mol (3311.2298 without restraints) Performing minimization step: 2627. Total energy = 3317.2496 kcal/mol (3311.0889 without restraints) Performing minimization step: 2628. Total energy = 3317.1069 kcal/mol (3310.9476 without restraints) Performing minimization step: 2629. Total energy = 3316.9642 kcal/mol (3310.8064 without restraints) Performing minimization step: 2630. Total energy = 3316.8215 kcal/mol (3310.6653 without restraints) Performing minimization step: 2631. Total energy = 3316.6791 kcal/mol (3310.5245 without restraints) Performing minimization step: 2632. Total energy = 3316.5366 kcal/mol (3310.3834 without restraints) Performing minimization step: 2633. Total energy = 3316.3941 kcal/mol (3310.2424 without restraints) Performing minimization step: 2634. Total energy = 3316.2516 kcal/mol (3310.1014 without restraints) Performing minimization step: 2635. Total energy = 3316.1094 kcal/mol (3309.9608 without restraints) Performing minimization step: 2636. Total energy = 3315.9676 kcal/mol (3309.8205 without restraints) Performing minimization step: 2637. Total energy = 3315.8251 kcal/mol (3309.6796 without restraints) Performing minimization step: 2638. Total energy = 3315.6833 kcal/mol (3309.5392 without restraints) Performing minimization step: 2639. Total energy = 3315.5410 kcal/mol (3309.3984 without restraints) Performing minimization step: 2640. Total energy = 3315.3986 kcal/mol (3309.2577 without restraints) Performing minimization step: 2641. Total energy = 3315.2570 kcal/mol (3309.1175 without restraints) Performing minimization step: 2642. Total energy = 3315.1153 kcal/mol (3308.9773 without restraints) Performing minimization step: 2643. Total energy = 3314.9731 kcal/mol (3308.8366 without restraints) Performing minimization step: 2644. Total energy = 3314.8312 kcal/mol (3308.6962 without restraints) Performing minimization step: 2645. Total energy = 3314.6896 kcal/mol (3308.5562 without restraints) Performing minimization step: 2646. Total energy = 3314.5480 kcal/mol (3308.4161 without restraints) Performing minimization step: 2647. Total energy = 3314.4063 kcal/mol (3308.2759 without restraints) Performing minimization step: 2648. Total energy = 3314.2647 kcal/mol (3308.1358 without restraints) Performing minimization step: 2649. Total energy = 3314.1234 kcal/mol (3307.9959 without restraints) Performing minimization step: 2650. Total energy = 3313.9819 kcal/mol (3307.8561 without restraints) Performing minimization step: 2651. Total energy = 3313.8406 kcal/mol (3307.7163 without restraints) Performing minimization step: 2652. Total energy = 3313.6994 kcal/mol (3307.5766 without restraints) Performing minimization step: 2653. Total energy = 3313.5579 kcal/mol (3307.4366 without restraints) Performing minimization step: 2654. Total energy = 3313.4170 kcal/mol (3307.2972 without restraints) Performing minimization step: 2655. Total energy = 3313.2754 kcal/mol (3307.1570 without restraints) Performing minimization step: 2656. Total energy = 3313.1345 kcal/mol (3307.0177 without restraints) Performing minimization step: 2657. Total energy = 3312.9936 kcal/mol (3306.8783 without restraints) Performing minimization step: 2658. Total energy = 3312.8527 kcal/mol (3306.7389 without restraints) Performing minimization step: 2659. Total energy = 3312.7120 kcal/mol (3306.5997 without restraints) Performing minimization step: 2660. Total energy = 3312.5714 kcal/mol (3306.4605 without restraints) Performing minimization step: 2661. Total energy = 3312.4307 kcal/mol (3306.3215 without restraints) Performing minimization step: 2662. Total energy = 3312.2897 kcal/mol (3306.1817 without restraints) Performing minimization step: 2663. Total energy = 3312.1492 kcal/mol (3306.0429 without restraints) Performing minimization step: 2664. Total energy = 3312.0084 kcal/mol (3305.9036 without restraints) Performing minimization step: 2665. Total energy = 3311.8678 kcal/mol (3305.7644 without restraints) Performing minimization step: 2666. Total energy = 3311.7272 kcal/mol (3305.6253 without restraints) Performing minimization step: 2667. Total energy = 3311.5867 kcal/mol (3305.4865 without restraints) Performing minimization step: 2668. Total energy = 3311.4467 kcal/mol (3305.3479 without restraints) Performing minimization step: 2669. Total energy = 3311.3061 kcal/mol (3305.2087 without restraints) Performing minimization step: 2670. Total energy = 3311.1658 kcal/mol (3305.0701 without restraints) Performing minimization step: 2671. Total energy = 3311.0253 kcal/mol (3304.9310 without restraints) Performing minimization step: 2672. Total energy = 3310.8859 kcal/mol (3304.7931 without restraints) Performing minimization step: 2673. Total energy = 3310.7457 kcal/mol (3304.6544 without restraints) Performing minimization step: 2674. Total energy = 3310.6049 kcal/mol (3304.5151 without restraints) Performing minimization step: 2675. Total energy = 3310.4648 kcal/mol (3304.3764 without restraints) Performing minimization step: 2676. Total energy = 3310.3247 kcal/mol (3304.2379 without restraints) Performing minimization step: 2677. Total energy = 3310.1850 kcal/mol (3304.0997 without restraints) Performing minimization step: 2678. Total energy = 3310.0452 kcal/mol (3303.9612 without restraints) Performing minimization step: 2679. Total energy = 3309.9054 kcal/mol (3303.8231 without restraints) Performing minimization step: 2680. Total energy = 3309.7658 kcal/mol (3303.6849 without restraints) Performing minimization step: 2681. Total energy = 3309.6264 kcal/mol (3303.5472 without restraints) Performing minimization step: 2682. Total energy = 3309.4873 kcal/mol (3303.4094 without restraints) Performing minimization step: 2683. Total energy = 3309.3477 kcal/mol (3303.2713 without restraints) Performing minimization step: 2684. Total energy = 3309.2080 kcal/mol (3303.1331 without restraints) Performing minimization step: 2685. Total energy = 3309.0687 kcal/mol (3302.9953 without restraints) Performing minimization step: 2686. Total energy = 3308.9287 kcal/mol (3302.8568 without restraints) Performing minimization step: 2687. Total energy = 3308.7896 kcal/mol (3302.7192 without restraints) Performing minimization step: 2688. Total energy = 3308.6506 kcal/mol (3302.5816 without restraints) Performing minimization step: 2689. Total energy = 3308.5114 kcal/mol (3302.4438 without restraints) Performing minimization step: 2690. Total energy = 3308.3723 kcal/mol (3302.3063 without restraints) Performing minimization step: 2691. Total energy = 3308.2329 kcal/mol (3302.1684 without restraints) Performing minimization step: 2692. Total energy = 3308.0941 kcal/mol (3302.0310 without restraints) Performing minimization step: 2693. Total energy = 3307.9556 kcal/mol (3301.8940 without restraints) Performing minimization step: 2694. Total energy = 3307.8170 kcal/mol (3301.7568 without restraints) Performing minimization step: 2695. Total energy = 3307.6782 kcal/mol (3301.6196 without restraints) Performing minimization step: 2696. Total energy = 3307.5396 kcal/mol (3301.4825 without restraints) Performing minimization step: 2697. Total energy = 3307.4006 kcal/mol (3301.3450 without restraints) Performing minimization step: 2698. Total energy = 3307.2614 kcal/mol (3301.2072 without restraints) Performing minimization step: 2699. Total energy = 3307.1229 kcal/mol (3301.0702 without restraints) Performing minimization step: 2700. Total energy = 3306.9844 kcal/mol (3300.9332 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 3306.8464 kcal/mol (3300.7966 without restraints) Performing minimization step: 2702. Total energy = 3306.7083 kcal/mol (3300.6599 without restraints) Performing minimization step: 2703. Total energy = 3306.5703 kcal/mol (3300.5236 without restraints) Performing minimization step: 2704. Total energy = 3306.4320 kcal/mol (3300.3865 without restraints) Performing minimization step: 2705. Total energy = 3306.2938 kcal/mol (3300.2500 without restraints) Performing minimization step: 2706. Total energy = 3306.1560 kcal/mol (3300.1137 without restraints) Performing minimization step: 2707. Total energy = 3306.0181 kcal/mol (3299.9771 without restraints) Performing minimization step: 2708. Total energy = 3305.8801 kcal/mol (3299.8408 without restraints) Performing minimization step: 2709. Total energy = 3305.7426 kcal/mol (3299.7046 without restraints) Performing minimization step: 2710. Total energy = 3305.6048 kcal/mol (3299.5683 without restraints) Performing minimization step: 2711. Total energy = 3305.4667 kcal/mol (3299.4317 without restraints) Performing minimization step: 2712. Total energy = 3305.3291 kcal/mol (3299.2955 without restraints) Performing minimization step: 2713. Total energy = 3305.1915 kcal/mol (3299.1594 without restraints) Performing minimization step: 2714. Total energy = 3305.0537 kcal/mol (3299.0230 without restraints) Performing minimization step: 2715. Total energy = 3304.9162 kcal/mol (3298.8870 without restraints) Performing minimization step: 2716. Total energy = 3304.7788 kcal/mol (3298.7511 without restraints) Performing minimization step: 2717. Total energy = 3304.6414 kcal/mol (3298.6150 without restraints) Performing minimization step: 2718. Total energy = 3304.5043 kcal/mol (3298.4795 without restraints) Performing minimization step: 2719. Total energy = 3304.3670 kcal/mol (3298.3437 without restraints) Performing minimization step: 2720. Total energy = 3304.2301 kcal/mol (3298.2082 without restraints) Performing minimization step: 2721. Total energy = 3304.0933 kcal/mol (3298.0729 without restraints) Performing minimization step: 2722. Total energy = 3303.9564 kcal/mol (3297.9373 without restraints) Performing minimization step: 2723. Total energy = 3303.8193 kcal/mol (3297.8018 without restraints) Performing minimization step: 2724. Total energy = 3303.6821 kcal/mol (3297.6660 without restraints) Performing minimization step: 2725. Total energy = 3303.5456 kcal/mol (3297.5310 without restraints) Performing minimization step: 2726. Total energy = 3303.4086 kcal/mol (3297.3955 without restraints) Performing minimization step: 2727. Total energy = 3303.2718 kcal/mol (3297.2601 without restraints) Performing minimization step: 2728. Total energy = 3303.1351 kcal/mol (3297.1250 without restraints) Performing minimization step: 2729. Total energy = 3302.9989 kcal/mol (3296.9903 without restraints) Performing minimization step: 2730. Total energy = 3302.8622 kcal/mol (3296.8549 without restraints) Performing minimization step: 2731. Total energy = 3302.7253 kcal/mol (3296.7196 without restraints) Performing minimization step: 2732. Total energy = 3302.5890 kcal/mol (3296.5845 without restraints) Performing minimization step: 2733. Total energy = 3302.4530 kcal/mol (3296.4500 without restraints) Performing minimization step: 2734. Total energy = 3302.3172 kcal/mol (3296.3158 without restraints) Performing minimization step: 2735. Total energy = 3302.1810 kcal/mol (3296.1810 without restraints) Performing minimization step: 2736. Total energy = 3302.0448 kcal/mol (3296.0462 without restraints) Performing minimization step: 2737. Total energy = 3301.9086 kcal/mol (3295.9115 without restraints) Performing minimization step: 2738. Total energy = 3301.7728 kcal/mol (3295.7773 without restraints) Performing minimization step: 2739. Total energy = 3301.6366 kcal/mol (3295.6422 without restraints) Performing minimization step: 2740. Total energy = 3301.5003 kcal/mol (3295.5075 without restraints) Performing minimization step: 2741. Total energy = 3301.3644 kcal/mol (3295.3729 without restraints) Performing minimization step: 2742. Total energy = 3301.2283 kcal/mol (3295.2383 without restraints) Performing minimization step: 2743. Total energy = 3301.0925 kcal/mol (3295.1040 without restraints) Performing minimization step: 2744. Total energy = 3300.9566 kcal/mol (3294.9696 without restraints) Performing minimization step: 2745. Total energy = 3300.8212 kcal/mol (3294.8356 without restraints) Performing minimization step: 2746. Total energy = 3300.6857 kcal/mol (3294.7016 without restraints) Performing minimization step: 2747. Total energy = 3300.5497 kcal/mol (3294.5668 without restraints) Performing minimization step: 2748. Total energy = 3300.4139 kcal/mol (3294.4326 without restraints) Performing minimization step: 2749. Total energy = 3300.2782 kcal/mol (3294.2981 without restraints) Performing minimization step: 2750. Total energy = 3300.1425 kcal/mol (3294.1642 without restraints) Performing minimization step: 2751. Total energy = 3300.0070 kcal/mol (3294.0300 without restraints) Performing minimization step: 2752. Total energy = 3299.8720 kcal/mol (3293.8965 without restraints) Performing minimization step: 2753. Total energy = 3299.7367 kcal/mol (3293.7627 without restraints) Performing minimization step: 2754. Total energy = 3299.6018 kcal/mol (3293.6292 without restraints) Performing minimization step: 2755. Total energy = 3299.4668 kcal/mol (3293.4956 without restraints) Performing minimization step: 2756. Total energy = 3299.3319 kcal/mol (3293.3621 without restraints) Performing minimization step: 2757. Total energy = 3299.1966 kcal/mol (3293.2283 without restraints) Performing minimization step: 2758. Total energy = 3299.0618 kcal/mol (3293.0951 without restraints) Performing minimization step: 2759. Total energy = 3298.9270 kcal/mol (3292.9615 without restraints) Performing minimization step: 2760. Total energy = 3298.7924 kcal/mol (3292.8284 without restraints) Performing minimization step: 2761. Total energy = 3298.6576 kcal/mol (3292.6950 without restraints) Performing minimization step: 2762. Total energy = 3298.5232 kcal/mol (3292.5620 without restraints) Performing minimization step: 2763. Total energy = 3298.3887 kcal/mol (3292.4290 without restraints) Performing minimization step: 2764. Total energy = 3298.2542 kcal/mol (3292.2958 without restraints) Performing minimization step: 2765. Total energy = 3298.1192 kcal/mol (3292.1623 without restraints) Performing minimization step: 2766. Total energy = 3297.9846 kcal/mol (3292.0290 without restraints) Performing minimization step: 2767. Total energy = 3297.8500 kcal/mol (3291.8960 without restraints) Performing minimization step: 2768. Total energy = 3297.7157 kcal/mol (3291.7631 without restraints) Performing minimization step: 2769. Total energy = 3297.5812 kcal/mol (3291.6301 without restraints) Performing minimization step: 2770. Total energy = 3297.4466 kcal/mol (3291.4968 without restraints) Performing minimization step: 2771. Total energy = 3297.3125 kcal/mol (3291.3642 without restraints) Performing minimization step: 2772. Total energy = 3297.1783 kcal/mol (3291.2315 without restraints) Performing minimization step: 2773. Total energy = 3297.0444 kcal/mol (3291.0989 without restraints) Performing minimization step: 2774. Total energy = 3296.9102 kcal/mol (3290.9664 without restraints) Performing minimization step: 2775. Total energy = 3296.7766 kcal/mol (3290.8339 without restraints) Performing minimization step: 2776. Total energy = 3296.6424 kcal/mol (3290.7013 without restraints) Performing minimization step: 2777. Total energy = 3296.5086 kcal/mol (3290.5689 without restraints) Performing minimization step: 2778. Total energy = 3296.3746 kcal/mol (3290.4361 without restraints) Performing minimization step: 2779. Total energy = 3296.2413 kcal/mol (3290.3043 without restraints) Performing minimization step: 2780. Total energy = 3296.1078 kcal/mol (3290.1723 without restraints) Performing minimization step: 2781. Total energy = 3295.9742 kcal/mol (3290.0401 without restraints) Performing minimization step: 2782. Total energy = 3295.8406 kcal/mol (3289.9079 without restraints) Performing minimization step: 2783. Total energy = 3295.7070 kcal/mol (3289.7758 without restraints) Performing minimization step: 2784. Total energy = 3295.5736 kcal/mol (3289.6437 without restraints) Performing minimization step: 2785. Total energy = 3295.4403 kcal/mol (3289.5118 without restraints) Performing minimization step: 2786. Total energy = 3295.3072 kcal/mol (3289.3802 without restraints) Performing minimization step: 2787. Total energy = 3295.1741 kcal/mol (3289.2485 without restraints) Performing minimization step: 2788. Total energy = 3295.0404 kcal/mol (3289.1161 without restraints) Performing minimization step: 2789. Total energy = 3294.9071 kcal/mol (3288.9844 without restraints) Performing minimization step: 2790. Total energy = 3294.7744 kcal/mol (3288.8530 without restraints) Performing minimization step: 2791. Total energy = 3294.6411 kcal/mol (3288.7212 without restraints) Performing minimization step: 2792. Total energy = 3294.5081 kcal/mol (3288.5895 without restraints) Performing minimization step: 2793. Total energy = 3294.3753 kcal/mol (3288.4582 without restraints) Performing minimization step: 2794. Total energy = 3294.2424 kcal/mol (3288.3266 without restraints) Performing minimization step: 2795. Total energy = 3294.1095 kcal/mol (3288.1952 without restraints) Performing minimization step: 2796. Total energy = 3293.9767 kcal/mol (3288.0637 without restraints) Performing minimization step: 2797. Total energy = 3293.8444 kcal/mol (3287.9329 without restraints) Performing minimization step: 2798. Total energy = 3293.7115 kcal/mol (3287.8014 without restraints) Performing minimization step: 2799. Total energy = 3293.5790 kcal/mol (3287.6703 without restraints) Performing minimization step: 2800. Total energy = 3293.4465 kcal/mol (3287.5392 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 3293.3142 kcal/mol (3287.4086 without restraints) Performing minimization step: 2802. Total energy = 3293.1819 kcal/mol (3287.2772 without restraints) Performing minimization step: 2803. Total energy = 3293.0494 kcal/mol (3287.1463 without restraints) Performing minimization step: 2804. Total energy = 3292.9172 kcal/mol (3287.0157 without restraints) Performing minimization step: 2805. Total energy = 3292.7851 kcal/mol (3286.8849 without restraints) Performing minimization step: 2806. Total energy = 3292.6528 kcal/mol (3286.7541 without restraints) Performing minimization step: 2807. Total energy = 3292.5206 kcal/mol (3286.6232 without restraints) Performing minimization step: 2808. Total energy = 3292.3885 kcal/mol (3286.4925 without restraints) Performing minimization step: 2809. Total energy = 3292.2561 kcal/mol (3286.3613 without restraints) Performing minimization step: 2810. Total energy = 3292.1239 kcal/mol (3286.2307 without restraints) Performing minimization step: 2811. Total energy = 3291.9918 kcal/mol (3286.0999 without restraints) Performing minimization step: 2812. Total energy = 3291.8603 kcal/mol (3285.9699 without restraints) Performing minimization step: 2813. Total energy = 3291.7285 kcal/mol (3285.8394 without restraints) Performing minimization step: 2814. Total energy = 3291.5968 kcal/mol (3285.7094 without restraints) Performing minimization step: 2815. Total energy = 3291.4656 kcal/mol (3285.5792 without restraints) Performing minimization step: 2816. Total energy = 3291.3337 kcal/mol (3285.4488 without restraints) Performing minimization step: 2817. Total energy = 3291.2021 kcal/mol (3285.3187 without restraints) Performing minimization step: 2818. Total energy = 3291.0707 kcal/mol (3285.1886 without restraints) Performing minimization step: 2819. Total energy = 3290.9393 kcal/mol (3285.0586 without restraints) Performing minimization step: 2820. Total energy = 3290.8078 kcal/mol (3284.9284 without restraints) Performing minimization step: 2821. Total energy = 3290.6761 kcal/mol (3284.7981 without restraints) Performing minimization step: 2822. Total energy = 3290.5450 kcal/mol (3284.6685 without restraints) Performing minimization step: 2823. Total energy = 3290.4138 kcal/mol (3284.5388 without restraints) Performing minimization step: 2824. Total energy = 3290.2828 kcal/mol (3284.4091 without restraints) Performing minimization step: 2825. Total energy = 3290.1519 kcal/mol (3284.2797 without restraints) Performing minimization step: 2826. Total energy = 3290.0212 kcal/mol (3284.1504 without restraints) Performing minimization step: 2827. Total energy = 3289.8903 kcal/mol (3284.0207 without restraints) Performing minimization step: 2828. Total energy = 3289.7595 kcal/mol (3283.8914 without restraints) Performing minimization step: 2829. Total energy = 3289.6284 kcal/mol (3283.7617 without restraints) Performing minimization step: 2830. Total energy = 3289.4976 kcal/mol (3283.6323 without restraints) Performing minimization step: 2831. Total energy = 3289.3670 kcal/mol (3283.5030 without restraints) Performing minimization step: 2832. Total energy = 3289.2361 kcal/mol (3283.3735 without restraints) Performing minimization step: 2833. Total energy = 3289.1053 kcal/mol (3283.2440 without restraints) Performing minimization step: 2834. Total energy = 3288.9746 kcal/mol (3283.1148 without restraints) Performing minimization step: 2835. Total energy = 3288.8442 kcal/mol (3282.9855 without restraints) Performing minimization step: 2836. Total energy = 3288.7136 kcal/mol (3282.8565 without restraints) Performing minimization step: 2837. Total energy = 3288.5830 kcal/mol (3282.7273 without restraints) Performing minimization step: 2838. Total energy = 3288.4523 kcal/mol (3282.5979 without restraints) Performing minimization step: 2839. Total energy = 3288.3221 kcal/mol (3282.4692 without restraints) Performing minimization step: 2840. Total energy = 3288.1917 kcal/mol (3282.3402 without restraints) Performing minimization step: 2841. Total energy = 3288.0611 kcal/mol (3282.2110 without restraints) Performing minimization step: 2842. Total energy = 3287.9308 kcal/mol (3282.0820 without restraints) Performing minimization step: 2843. Total energy = 3287.8005 kcal/mol (3281.9531 without restraints) Performing minimization step: 2844. Total energy = 3287.6705 kcal/mol (3281.8245 without restraints) Performing minimization step: 2845. Total energy = 3287.5405 kcal/mol (3281.6958 without restraints) Performing minimization step: 2846. Total energy = 3287.4106 kcal/mol (3281.5673 without restraints) Performing minimization step: 2847. Total energy = 3287.2808 kcal/mol (3281.4390 without restraints) Performing minimization step: 2848. Total energy = 3287.1511 kcal/mol (3281.3106 without restraints) Performing minimization step: 2849. Total energy = 3287.0215 kcal/mol (3281.1823 without restraints) Performing minimization step: 2850. Total energy = 3286.8917 kcal/mol (3281.0539 without restraints) Performing minimization step: 2851. Total energy = 3286.7620 kcal/mol (3280.9256 without restraints) Performing minimization step: 2852. Total energy = 3286.6325 kcal/mol (3280.7975 without restraints) Performing minimization step: 2853. Total energy = 3286.5029 kcal/mol (3280.6693 without restraints) Performing minimization step: 2854. Total energy = 3286.3735 kcal/mol (3280.5412 without restraints) Performing minimization step: 2855. Total energy = 3286.2440 kcal/mol (3280.4131 without restraints) Performing minimization step: 2856. Total energy = 3286.1147 kcal/mol (3280.2851 without restraints) Performing minimization step: 2857. Total energy = 3285.9855 kcal/mol (3280.1574 without restraints) Performing minimization step: 2858. Total energy = 3285.8565 kcal/mol (3280.0297 without restraints) Performing minimization step: 2859. Total energy = 3285.7275 kcal/mol (3279.9021 without restraints) Performing minimization step: 2860. Total energy = 3285.5984 kcal/mol (3279.7744 without restraints) Performing minimization step: 2861. Total energy = 3285.4693 kcal/mol (3279.6467 without restraints) Performing minimization step: 2862. Total energy = 3285.3401 kcal/mol (3279.5188 without restraints) Performing minimization step: 2863. Total energy = 3285.2112 kcal/mol (3279.3912 without restraints) Performing minimization step: 2864. Total energy = 3285.0823 kcal/mol (3279.2637 without restraints) Performing minimization step: 2865. Total energy = 3284.9535 kcal/mol (3279.1362 without restraints) Performing minimization step: 2866. Total energy = 3284.8249 kcal/mol (3279.0091 without restraints) Performing minimization step: 2867. Total energy = 3284.6962 kcal/mol (3278.8817 without restraints) Performing minimization step: 2868. Total energy = 3284.5673 kcal/mol (3278.7542 without restraints) Performing minimization step: 2869. Total energy = 3284.4388 kcal/mol (3278.6270 without restraints) Performing minimization step: 2870. Total energy = 3284.3100 kcal/mol (3278.4996 without restraints) Performing minimization step: 2871. Total energy = 3284.1817 kcal/mol (3278.3726 without restraints) Performing minimization step: 2872. Total energy = 3284.0532 kcal/mol (3278.2455 without restraints) Performing minimization step: 2873. Total energy = 3283.9253 kcal/mol (3278.1190 without restraints) Performing minimization step: 2874. Total energy = 3283.7966 kcal/mol (3277.9916 without restraints) Performing minimization step: 2875. Total energy = 3283.6680 kcal/mol (3277.8643 without restraints) Performing minimization step: 2876. Total energy = 3283.5399 kcal/mol (3277.7376 without restraints) Performing minimization step: 2877. Total energy = 3283.4118 kcal/mol (3277.6109 without restraints) Performing minimization step: 2878. Total energy = 3283.2836 kcal/mol (3277.4841 without restraints) Performing minimization step: 2879. Total energy = 3283.1559 kcal/mol (3277.3578 without restraints) Performing minimization step: 2880. Total energy = 3283.0277 kcal/mol (3277.2309 without restraints) Performing minimization step: 2881. Total energy = 3282.8998 kcal/mol (3277.1043 without restraints) Performing minimization step: 2882. Total energy = 3282.7717 kcal/mol (3276.9776 without restraints) Performing minimization step: 2883. Total energy = 3282.6433 kcal/mol (3276.8505 without restraints) Performing minimization step: 2884. Total energy = 3282.5154 kcal/mol (3276.7240 without restraints) Performing minimization step: 2885. Total energy = 3282.3879 kcal/mol (3276.5978 without restraints) Performing minimization step: 2886. Total energy = 3282.2601 kcal/mol (3276.4715 without restraints) Performing minimization step: 2887. Total energy = 3282.1327 kcal/mol (3276.3453 without restraints) Performing minimization step: 2888. Total energy = 3282.0048 kcal/mol (3276.2188 without restraints) Performing minimization step: 2889. Total energy = 3281.8771 kcal/mol (3276.0924 without restraints) Performing minimization step: 2890. Total energy = 3281.7496 kcal/mol (3275.9663 without restraints) Performing minimization step: 2891. Total energy = 3281.6224 kcal/mol (3275.8405 without restraints) Performing minimization step: 2892. Total energy = 3281.4951 kcal/mol (3275.7145 without restraints) Performing minimization step: 2893. Total energy = 3281.3676 kcal/mol (3275.5883 without restraints) Performing minimization step: 2894. Total energy = 3281.2403 kcal/mol (3275.4624 without restraints) Performing minimization step: 2895. Total energy = 3281.1131 kcal/mol (3275.3365 without restraints) Performing minimization step: 2896. Total energy = 3280.9861 kcal/mol (3275.2109 without restraints) Performing minimization step: 2897. Total energy = 3280.8592 kcal/mol (3275.0853 without restraints) Performing minimization step: 2898. Total energy = 3280.7324 kcal/mol (3274.9599 without restraints) Performing minimization step: 2899. Total energy = 3280.6056 kcal/mol (3274.8344 without restraints) Performing minimization step: 2900. Total energy = 3280.4789 kcal/mol (3274.7090 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 3280.3517 kcal/mol (3274.5832 without restraints) Performing minimization step: 2902. Total energy = 3280.2250 kcal/mol (3274.4579 without restraints) Performing minimization step: 2903. Total energy = 3280.0982 kcal/mol (3274.3324 without restraints) Performing minimization step: 2904. Total energy = 3279.9714 kcal/mol (3274.2069 without restraints) Performing minimization step: 2905. Total energy = 3279.8449 kcal/mol (3274.0818 without restraints) Performing minimization step: 2906. Total energy = 3279.7180 kcal/mol (3273.9562 without restraints) Performing minimization step: 2907. Total energy = 3279.5913 kcal/mol (3273.8309 without restraints) Performing minimization step: 2908. Total energy = 3279.4649 kcal/mol (3273.7057 without restraints) Performing minimization step: 2909. Total energy = 3279.3385 kcal/mol (3273.5806 without restraints) Performing minimization step: 2910. Total energy = 3279.2116 kcal/mol (3273.4551 without restraints) Performing minimization step: 2911. Total energy = 3279.0861 kcal/mol (3273.3310 without restraints) Performing minimization step: 2912. Total energy = 3278.9598 kcal/mol (3273.2060 without restraints) Performing minimization step: 2913. Total energy = 3278.8335 kcal/mol (3273.0810 without restraints) Performing minimization step: 2914. Total energy = 3278.7074 kcal/mol (3272.9563 without restraints) Performing minimization step: 2915. Total energy = 3278.5807 kcal/mol (3272.8309 without restraints) Performing minimization step: 2916. Total energy = 3278.4544 kcal/mol (3272.7060 without restraints) Performing minimization step: 2917. Total energy = 3278.3284 kcal/mol (3272.5813 without restraints) Performing minimization step: 2918. Total energy = 3278.2025 kcal/mol (3272.4568 without restraints) Performing minimization step: 2919. Total energy = 3278.0768 kcal/mol (3272.3325 without restraints) Performing minimization step: 2920. Total energy = 3277.9512 kcal/mol (3272.2081 without restraints) Performing minimization step: 2921. Total energy = 3277.8254 kcal/mol (3272.0836 without restraints) Performing minimization step: 2922. Total energy = 3277.6996 kcal/mol (3271.9590 without restraints) Performing minimization step: 2923. Total energy = 3277.5735 kcal/mol (3271.8344 without restraints) Performing minimization step: 2924. Total energy = 3277.4471 kcal/mol (3271.7093 without restraints) Performing minimization step: 2925. Total energy = 3277.3215 kcal/mol (3271.5850 without restraints) Performing minimization step: 2926. Total energy = 3277.1958 kcal/mol (3271.4605 without restraints) Performing minimization step: 2927. Total energy = 3277.0701 kcal/mol (3271.3363 without restraints) Performing minimization step: 2928. Total energy = 3276.9445 kcal/mol (3271.2119 without restraints) Performing minimization step: 2929. Total energy = 3276.8189 kcal/mol (3271.0879 without restraints) Performing minimization step: 2930. Total energy = 3276.6937 kcal/mol (3270.9638 without restraints) Performing minimization step: 2931. Total energy = 3276.5681 kcal/mol (3270.8396 without restraints) Performing minimization step: 2932. Total energy = 3276.4428 kcal/mol (3270.7157 without restraints) Performing minimization step: 2933. Total energy = 3276.3178 kcal/mol (3270.5922 without restraints) Performing minimization step: 2934. Total energy = 3276.1926 kcal/mol (3270.4680 without restraints) Performing minimization step: 2935. Total energy = 3276.0680 kcal/mol (3270.3448 without restraints) Performing minimization step: 2936. Total energy = 3275.9427 kcal/mol (3270.2208 without restraints) Performing minimization step: 2937. Total energy = 3275.8177 kcal/mol (3270.0971 without restraints) Performing minimization step: 2938. Total energy = 3275.6930 kcal/mol (3269.9738 without restraints) Performing minimization step: 2939. Total energy = 3275.5683 kcal/mol (3269.8504 without restraints) Performing minimization step: 2940. Total energy = 3275.4437 kcal/mol (3269.7271 without restraints) Performing minimization step: 2941. Total energy = 3275.3188 kcal/mol (3269.6037 without restraints) Performing minimization step: 2942. Total energy = 3275.1942 kcal/mol (3269.4803 without restraints) Performing minimization step: 2943. Total energy = 3275.0695 kcal/mol (3269.3569 without restraints) Performing minimization step: 2944. Total energy = 3274.9449 kcal/mol (3269.2336 without restraints) Performing minimization step: 2945. Total energy = 3274.8203 kcal/mol (3269.1103 without restraints) Performing minimization step: 2946. Total energy = 3274.6958 kcal/mol (3268.9871 without restraints) Performing minimization step: 2947. Total energy = 3274.5712 kcal/mol (3268.8637 without restraints) Performing minimization step: 2948. Total energy = 3274.4465 kcal/mol (3268.7404 without restraints) Performing minimization step: 2949. Total energy = 3274.3221 kcal/mol (3268.6174 without restraints) Performing minimization step: 2950. Total energy = 3274.1978 kcal/mol (3268.4943 without restraints) Performing minimization step: 2951. Total energy = 3274.0732 kcal/mol (3268.3711 without restraints) Performing minimization step: 2952. Total energy = 3273.9490 kcal/mol (3268.2482 without restraints) Performing minimization step: 2953. Total energy = 3273.8253 kcal/mol (3268.1258 without restraints) Performing minimization step: 2954. Total energy = 3273.7010 kcal/mol (3268.0027 without restraints) Performing minimization step: 2955. Total energy = 3273.5767 kcal/mol (3267.8797 without restraints) Performing minimization step: 2956. Total energy = 3273.4525 kcal/mol (3267.7569 without restraints) Performing minimization step: 2957. Total energy = 3273.3287 kcal/mol (3267.6345 without restraints) Performing minimization step: 2958. Total energy = 3273.2049 kcal/mol (3267.5119 without restraints) Performing minimization step: 2959. Total energy = 3273.0807 kcal/mol (3267.3891 without restraints) Performing minimization step: 2960. Total energy = 3272.9569 kcal/mol (3267.2666 without restraints) Performing minimization step: 2961. Total energy = 3272.8332 kcal/mol (3267.1441 without restraints) Performing minimization step: 2962. Total energy = 3272.7092 kcal/mol (3267.0214 without restraints) Performing minimization step: 2963. Total energy = 3272.5854 kcal/mol (3266.8990 without restraints) Performing minimization step: 2964. Total energy = 3272.4620 kcal/mol (3266.7769 without restraints) Performing minimization step: 2965. Total energy = 3272.3382 kcal/mol (3266.6544 without restraints) Performing minimization step: 2966. Total energy = 3272.2143 kcal/mol (3266.5318 without restraints) Performing minimization step: 2967. Total energy = 3272.0907 kcal/mol (3266.4094 without restraints) Performing minimization step: 2968. Total energy = 3271.9677 kcal/mol (3266.2878 without restraints) Performing minimization step: 2969. Total energy = 3271.8443 kcal/mol (3266.1657 without restraints) Performing minimization step: 2970. Total energy = 3271.7207 kcal/mol (3266.0434 without restraints) Performing minimization step: 2971. Total energy = 3271.5977 kcal/mol (3265.9218 without restraints) Performing minimization step: 2972. Total energy = 3271.4749 kcal/mol (3265.8003 without restraints) Performing minimization step: 2973. Total energy = 3271.3517 kcal/mol (3265.6784 without restraints) Performing minimization step: 2974. Total energy = 3271.2288 kcal/mol (3265.5568 without restraints) Performing minimization step: 2975. Total energy = 3271.1061 kcal/mol (3265.4353 without restraints) Performing minimization step: 2976. Total energy = 3270.9831 kcal/mol (3265.3136 without restraints) Performing minimization step: 2977. Total energy = 3270.8602 kcal/mol (3265.1920 without restraints) Performing minimization step: 2978. Total energy = 3270.7377 kcal/mol (3265.0708 without restraints) Performing minimization step: 2979. Total energy = 3270.6146 kcal/mol (3264.9490 without restraints) Performing minimization step: 2980. Total energy = 3270.4918 kcal/mol (3264.8275 without restraints) Performing minimization step: 2981. Total energy = 3270.3692 kcal/mol (3264.7063 without restraints) Performing minimization step: 2982. Total energy = 3270.2466 kcal/mol (3264.5849 without restraints) Performing minimization step: 2983. Total energy = 3270.1239 kcal/mol (3264.4635 without restraints) Performing minimization step: 2984. Total energy = 3270.0014 kcal/mol (3264.3424 without restraints) Performing minimization step: 2985. Total energy = 3269.8786 kcal/mol (3264.2208 without restraints) Performing minimization step: 2986. Total energy = 3269.7563 kcal/mol (3264.0998 without restraints) Performing minimization step: 2987. Total energy = 3269.6340 kcal/mol (3263.9788 without restraints) Performing minimization step: 2988. Total energy = 3269.5113 kcal/mol (3263.8574 without restraints) Performing minimization step: 2989. Total energy = 3269.3890 kcal/mol (3263.7363 without restraints) Performing minimization step: 2990. Total energy = 3269.2669 kcal/mol (3263.6156 without restraints) Performing minimization step: 2991. Total energy = 3269.1448 kcal/mol (3263.4948 without restraints) Performing minimization step: 2992. Total energy = 3269.0230 kcal/mol (3263.3742 without restraints) Performing minimization step: 2993. Total energy = 3268.9009 kcal/mol (3263.2535 without restraints) Performing minimization step: 2994. Total energy = 3268.7790 kcal/mol (3263.1326 without restraints) Performing minimization step: 2995. Total energy = 3268.6567 kcal/mol (3263.0118 without restraints) Performing minimization step: 2996. Total energy = 3268.5344 kcal/mol (3262.8908 without restraints) Performing minimization step: 2997. Total energy = 3268.4120 kcal/mol (3262.7698 without restraints) Performing minimization step: 2998. Total energy = 3268.2901 kcal/mol (3262.6491 without restraints) Performing minimization step: 2999. Total energy = 3268.1681 kcal/mol (3262.5284 without restraints) Performing minimization step: 3000. Total energy = 3268.0461 kcal/mol (3262.4077 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 3267.9240 kcal/mol (3262.2870 without restraints) Performing minimization step: 3002. Total energy = 3267.8023 kcal/mol (3262.1664 without restraints) Performing minimization step: 3003. Total energy = 3267.6804 kcal/mol (3262.0458 without restraints) Performing minimization step: 3004. Total energy = 3267.5591 kcal/mol (3261.9258 without restraints) Performing minimization step: 3005. Total energy = 3267.4375 kcal/mol (3261.8055 without restraints) Performing minimization step: 3006. Total energy = 3267.3156 kcal/mol (3261.6849 without restraints) Performing minimization step: 3007. Total energy = 3267.1943 kcal/mol (3261.5647 without restraints) Performing minimization step: 3008. Total energy = 3267.0727 kcal/mol (3261.4445 without restraints) Performing minimization step: 3009. Total energy = 3266.9513 kcal/mol (3261.3244 without restraints) Performing minimization step: 3010. Total energy = 3266.8304 kcal/mol (3261.2048 without restraints) Performing minimization step: 3011. Total energy = 3266.7093 kcal/mol (3261.0850 without restraints) Performing minimization step: 3012. Total energy = 3266.5882 kcal/mol (3260.9652 without restraints) Performing minimization step: 3013. Total energy = 3266.4673 kcal/mol (3260.8456 without restraints) Performing minimization step: 3014. Total energy = 3266.3463 kcal/mol (3260.7258 without restraints) Performing minimization step: 3015. Total energy = 3266.2254 kcal/mol (3260.6062 without restraints) Performing minimization step: 3016. Total energy = 3266.1043 kcal/mol (3260.4863 without restraints) Performing minimization step: 3017. Total energy = 3265.9835 kcal/mol (3260.3669 without restraints) Performing minimization step: 3018. Total energy = 3265.8630 kcal/mol (3260.2476 without restraints) Performing minimization step: 3019. Total energy = 3265.7424 kcal/mol (3260.1286 without restraints) Performing minimization step: 3020. Total energy = 3265.6217 kcal/mol (3260.0089 without restraints) Performing minimization step: 3021. Total energy = 3265.5009 kcal/mol (3259.8895 without restraints) Performing minimization step: 3022. Total energy = 3265.3803 kcal/mol (3259.7699 without restraints) Performing minimization step: 3023. Total energy = 3265.2599 kcal/mol (3259.6509 without restraints) Performing minimization step: 3024. Total energy = 3265.1389 kcal/mol (3259.5311 without restraints) Performing minimization step: 3025. Total energy = 3265.0183 kcal/mol (3259.4119 without restraints) Performing minimization step: 3026. Total energy = 3264.8980 kcal/mol (3259.2929 without restraints) Performing minimization step: 3027. Total energy = 3264.7780 kcal/mol (3259.1742 without restraints) Performing minimization step: 3028. Total energy = 3264.6577 kcal/mol (3259.0551 without restraints) Performing minimization step: 3029. Total energy = 3264.5372 kcal/mol (3258.9358 without restraints) Performing minimization step: 3030. Total energy = 3264.4165 kcal/mol (3258.8164 without restraints) Performing minimization step: 3031. Total energy = 3264.2961 kcal/mol (3258.6973 without restraints) Performing minimization step: 3032. Total energy = 3264.1758 kcal/mol (3258.5781 without restraints) Performing minimization step: 3033. Total energy = 3264.0557 kcal/mol (3258.4594 without restraints) Performing minimization step: 3034. Total energy = 3263.9357 kcal/mol (3258.3406 without restraints) Performing minimization step: 3035. Total energy = 3263.8156 kcal/mol (3258.2219 without restraints) Performing minimization step: 3036. Total energy = 3263.6958 kcal/mol (3258.1035 without restraints) Performing minimization step: 3037. Total energy = 3263.5762 kcal/mol (3257.9850 without restraints) Performing minimization step: 3038. Total energy = 3263.4564 kcal/mol (3257.8665 without restraints) Performing minimization step: 3039. Total energy = 3263.3360 kcal/mol (3257.7473 without restraints) Performing minimization step: 3040. Total energy = 3263.2160 kcal/mol (3257.6286 without restraints) Performing minimization step: 3041. Total energy = 3263.0965 kcal/mol (3257.5104 without restraints) Performing minimization step: 3042. Total energy = 3262.9770 kcal/mol (3257.3922 without restraints) Performing minimization step: 3043. Total energy = 3262.8575 kcal/mol (3257.2739 without restraints) Performing minimization step: 3044. Total energy = 3262.7378 kcal/mol (3257.1554 without restraints) Performing minimization step: 3045. Total energy = 3262.6183 kcal/mol (3257.0372 without restraints) Performing minimization step: 3046. Total energy = 3262.4985 kcal/mol (3256.9186 without restraints) Performing minimization step: 3047. Total energy = 3262.3786 kcal/mol (3256.8000 without restraints) Performing minimization step: 3048. Total energy = 3262.2592 kcal/mol (3256.6819 without restraints) Performing minimization step: 3049. Total energy = 3262.1400 kcal/mol (3256.5640 without restraints) Performing minimization step: 3050. Total energy = 3262.0206 kcal/mol (3256.4458 without restraints) Performing minimization step: 3051. Total energy = 3261.9015 kcal/mol (3256.3280 without restraints) Performing minimization step: 3052. Total energy = 3261.7825 kcal/mol (3256.2103 without restraints) Performing minimization step: 3053. Total energy = 3261.6633 kcal/mol (3256.0923 without restraints) Performing minimization step: 3054. Total energy = 3261.5444 kcal/mol (3255.9747 without restraints) Performing minimization step: 3055. Total energy = 3261.4256 kcal/mol (3255.8571 without restraints) Performing minimization step: 3056. Total energy = 3261.3066 kcal/mol (3255.7394 without restraints) Performing minimization step: 3057. Total energy = 3261.1875 kcal/mol (3255.6215 without restraints) Performing minimization step: 3058. Total energy = 3261.0687 kcal/mol (3255.5040 without restraints) Performing minimization step: 3059. Total energy = 3260.9496 kcal/mol (3255.3861 without restraints) Performing minimization step: 3060. Total energy = 3260.8307 kcal/mol (3255.2684 without restraints) Performing minimization step: 3061. Total energy = 3260.7120 kcal/mol (3255.1510 without restraints) Performing minimization step: 3062. Total energy = 3260.5931 kcal/mol (3255.0333 without restraints) Performing minimization step: 3063. Total energy = 3260.4742 kcal/mol (3254.9157 without restraints) Performing minimization step: 3064. Total energy = 3260.3559 kcal/mol (3254.7986 without restraints) Performing minimization step: 3065. Total energy = 3260.2375 kcal/mol (3254.6815 without restraints) Performing minimization step: 3066. Total energy = 3260.1180 kcal/mol (3254.5633 without restraints) Performing minimization step: 3067. Total energy = 3259.9997 kcal/mol (3254.4464 without restraints) Performing minimization step: 3068. Total energy = 3259.8813 kcal/mol (3254.3292 without restraints) Performing minimization step: 3069. Total energy = 3259.7632 kcal/mol (3254.2123 without restraints) Performing minimization step: 3070. Total energy = 3259.6450 kcal/mol (3254.0954 without restraints) Performing minimization step: 3071. Total energy = 3259.5270 kcal/mol (3253.9786 without restraints) Performing minimization step: 3072. Total energy = 3259.4086 kcal/mol (3253.8614 without restraints) Performing minimization step: 3073. Total energy = 3259.2909 kcal/mol (3253.7450 without restraints) Performing minimization step: 3074. Total energy = 3259.1730 kcal/mol (3253.6283 without restraints) Performing minimization step: 3075. Total energy = 3259.0550 kcal/mol (3253.5116 without restraints) Performing minimization step: 3076. Total energy = 3258.9373 kcal/mol (3253.3951 without restraints) Performing minimization step: 3077. Total energy = 3258.8190 kcal/mol (3253.2781 without restraints) Performing minimization step: 3078. Total energy = 3258.7011 kcal/mol (3253.1615 without restraints) Performing minimization step: 3079. Total energy = 3258.5832 kcal/mol (3253.0448 without restraints) Performing minimization step: 3080. Total energy = 3258.4655 kcal/mol (3252.9284 without restraints) Performing minimization step: 3081. Total energy = 3258.3478 kcal/mol (3252.8118 without restraints) Performing minimization step: 3082. Total energy = 3258.2299 kcal/mol (3252.6952 without restraints) Performing minimization step: 3083. Total energy = 3258.1123 kcal/mol (3252.5789 without restraints) Performing minimization step: 3084. Total energy = 3257.9946 kcal/mol (3252.4625 without restraints) Performing minimization step: 3085. Total energy = 3257.8774 kcal/mol (3252.3464 without restraints) Performing minimization step: 3086. Total energy = 3257.7599 kcal/mol (3252.2302 without restraints) Performing minimization step: 3087. Total energy = 3257.6425 kcal/mol (3252.1139 without restraints) Performing minimization step: 3088. Total energy = 3257.5250 kcal/mol (3251.9977 without restraints) Performing minimization step: 3089. Total energy = 3257.4077 kcal/mol (3251.8817 without restraints) Performing minimization step: 3090. Total energy = 3257.2901 kcal/mol (3251.7654 without restraints) Performing minimization step: 3091. Total energy = 3257.1731 kcal/mol (3251.6497 without restraints) Performing minimization step: 3092. Total energy = 3257.0561 kcal/mol (3251.5339 without restraints) Performing minimization step: 3093. Total energy = 3256.9388 kcal/mol (3251.4179 without restraints) Performing minimization step: 3094. Total energy = 3256.8216 kcal/mol (3251.3017 without restraints) Performing minimization step: 3095. Total energy = 3256.7043 kcal/mol (3251.1858 without restraints) Performing minimization step: 3096. Total energy = 3256.5872 kcal/mol (3251.0699 without restraints) Performing minimization step: 3097. Total energy = 3256.4704 kcal/mol (3250.9543 without restraints) Performing minimization step: 3098. Total energy = 3256.3536 kcal/mol (3250.8388 without restraints) Performing minimization step: 3099. Total energy = 3256.2366 kcal/mol (3250.7231 without restraints) Performing minimization step: 3100. Total energy = 3256.1199 kcal/mol (3250.6076 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 3256.0032 kcal/mol (3250.4920 without restraints) Performing minimization step: 3102. Total energy = 3255.8865 kcal/mol (3250.3766 without restraints) Performing minimization step: 3103. Total energy = 3255.7698 kcal/mol (3250.2613 without restraints) Performing minimization step: 3104. Total energy = 3255.6535 kcal/mol (3250.1461 without restraints) Performing minimization step: 3105. Total energy = 3255.5371 kcal/mol (3250.0309 without restraints) Performing minimization step: 3106. Total energy = 3255.4209 kcal/mol (3249.9159 without restraints) Performing minimization step: 3107. Total energy = 3255.3044 kcal/mol (3249.8008 without restraints) Performing minimization step: 3108. Total energy = 3255.1878 kcal/mol (3249.6853 without restraints) Performing minimization step: 3109. Total energy = 3255.0716 kcal/mol (3249.5704 without restraints) Performing minimization step: 3110. Total energy = 3254.9555 kcal/mol (3249.4556 without restraints) Performing minimization step: 3111. Total energy = 3254.8392 kcal/mol (3249.3405 without restraints) Performing minimization step: 3112. Total energy = 3254.7228 kcal/mol (3249.2252 without restraints) Performing minimization step: 3113. Total energy = 3254.6067 kcal/mol (3249.1105 without restraints) Performing minimization step: 3114. Total energy = 3254.4907 kcal/mol (3248.9957 without restraints) Performing minimization step: 3115. Total energy = 3254.3746 kcal/mol (3248.8808 without restraints) Performing minimization step: 3116. Total energy = 3254.2587 kcal/mol (3248.7662 without restraints) Performing minimization step: 3117. Total energy = 3254.1430 kcal/mol (3248.6516 without restraints) Performing minimization step: 3118. Total energy = 3254.0269 kcal/mol (3248.5367 without restraints) Performing minimization step: 3119. Total energy = 3253.9110 kcal/mol (3248.4220 without restraints) Performing minimization step: 3120. Total energy = 3253.7953 kcal/mol (3248.3076 without restraints) Performing minimization step: 3121. Total energy = 3253.6796 kcal/mol (3248.1932 without restraints) Performing minimization step: 3122. Total energy = 3253.5645 kcal/mol (3248.0793 without restraints) Performing minimization step: 3123. Total energy = 3253.4488 kcal/mol (3247.9646 without restraints) Performing minimization step: 3124. Total energy = 3253.3333 kcal/mol (3247.8506 without restraints) Performing minimization step: 3125. Total energy = 3253.2178 kcal/mol (3247.7363 without restraints) Performing minimization step: 3126. Total energy = 3253.1023 kcal/mol (3247.6220 without restraints) Performing minimization step: 3127. Total energy = 3252.9869 kcal/mol (3247.5078 without restraints) Performing minimization step: 3128. Total energy = 3252.8716 kcal/mol (3247.3938 without restraints) Performing minimization step: 3129. Total energy = 3252.7564 kcal/mol (3247.2798 without restraints) Performing minimization step: 3130. Total energy = 3252.6413 kcal/mol (3247.1659 without restraints) Performing minimization step: 3131. Total energy = 3252.5258 kcal/mol (3247.0515 without restraints) Performing minimization step: 3132. Total energy = 3252.4105 kcal/mol (3246.9376 without restraints) Performing minimization step: 3133. Total energy = 3252.2958 kcal/mol (3246.8241 without restraints) Performing minimization step: 3134. Total energy = 3252.1811 kcal/mol (3246.7106 without restraints) Performing minimization step: 3135. Total energy = 3252.0662 kcal/mol (3246.5969 without restraints) Performing minimization step: 3136. Total energy = 3251.9507 kcal/mol (3246.4827 without restraints) Performing minimization step: 3137. Total energy = 3251.8363 kcal/mol (3246.3695 without restraints) Performing minimization step: 3138. Total energy = 3251.7218 kcal/mol (3246.2562 without restraints) Performing minimization step: 3139. Total energy = 3251.6069 kcal/mol (3246.1425 without restraints) Performing minimization step: 3140. Total energy = 3251.4923 kcal/mol (3246.0292 without restraints) Performing minimization step: 3141. Total energy = 3251.3780 kcal/mol (3245.9163 without restraints) Performing minimization step: 3142. Total energy = 3251.2640 kcal/mol (3245.8033 without restraints) Performing minimization step: 3143. Total energy = 3251.1496 kcal/mol (3245.6901 without restraints) Performing minimization step: 3144. Total energy = 3251.0352 kcal/mol (3245.5769 without restraints) Performing minimization step: 3145. Total energy = 3250.9208 kcal/mol (3245.4637 without restraints) Performing minimization step: 3146. Total energy = 3250.8066 kcal/mol (3245.3508 without restraints) Performing minimization step: 3147. Total energy = 3250.6926 kcal/mol (3245.2380 without restraints) Performing minimization step: 3148. Total energy = 3250.5785 kcal/mol (3245.1251 without restraints) Performing minimization step: 3149. Total energy = 3250.4646 kcal/mol (3245.0125 without restraints) Performing minimization step: 3150. Total energy = 3250.3504 kcal/mol (3244.8992 without restraints) Performing minimization step: 3151. Total energy = 3250.2363 kcal/mol (3244.7866 without restraints) Performing minimization step: 3152. Total energy = 3250.1226 kcal/mol (3244.6741 without restraints) Performing minimization step: 3153. Total energy = 3250.0087 kcal/mol (3244.5614 without restraints) Performing minimization step: 3154. Total energy = 3249.8949 kcal/mol (3244.4487 without restraints) Performing minimization step: 3155. Total energy = 3249.7813 kcal/mol (3244.3366 without restraints) Performing minimization step: 3156. Total energy = 3249.6676 kcal/mol (3244.2239 without restraints) Performing minimization step: 3157. Total energy = 3249.5540 kcal/mol (3244.1117 without restraints) Performing minimization step: 3158. Total energy = 3249.4405 kcal/mol (3243.9992 without restraints) Performing minimization step: 3159. Total energy = 3249.3265 kcal/mol (3243.8865 without restraints) Performing minimization step: 3160. Total energy = 3249.2131 kcal/mol (3243.7744 without restraints) Performing minimization step: 3161. Total energy = 3249.0998 kcal/mol (3243.6622 without restraints) Performing minimization step: 3162. Total energy = 3248.9873 kcal/mol (3243.5511 without restraints) Performing minimization step: 3163. Total energy = 3248.8739 kcal/mol (3243.4388 without restraints) Performing minimization step: 3164. Total energy = 3248.7606 kcal/mol (3243.3265 without restraints) Performing minimization step: 3165. Total energy = 3248.6477 kcal/mol (3243.2150 without restraints) Performing minimization step: 3166. Total energy = 3248.5342 kcal/mol (3243.1027 without restraints) Performing minimization step: 3167. Total energy = 3248.4209 kcal/mol (3242.9906 without restraints) Performing minimization step: 3168. Total energy = 3248.3078 kcal/mol (3242.8787 without restraints) Performing minimization step: 3169. Total energy = 3248.1948 kcal/mol (3242.7670 without restraints) Performing minimization step: 3170. Total energy = 3248.0822 kcal/mol (3242.6555 without restraints) Performing minimization step: 3171. Total energy = 3247.9690 kcal/mol (3242.5436 without restraints) Performing minimization step: 3172. Total energy = 3247.8564 kcal/mol (3242.4322 without restraints) Performing minimization step: 3173. Total energy = 3247.7438 kcal/mol (3242.3208 without restraints) Performing minimization step: 3174. Total energy = 3247.6308 kcal/mol (3242.2089 without restraints) Performing minimization step: 3175. Total energy = 3247.5183 kcal/mol (3242.0977 without restraints) Performing minimization step: 3176. Total energy = 3247.4056 kcal/mol (3241.9862 without restraints) Performing minimization step: 3177. Total energy = 3247.2931 kcal/mol (3241.8749 without restraints) Performing minimization step: 3178. Total energy = 3247.1807 kcal/mol (3241.7638 without restraints) Performing minimization step: 3179. Total energy = 3247.0680 kcal/mol (3241.6522 without restraints) Performing minimization step: 3180. Total energy = 3246.9558 kcal/mol (3241.5412 without restraints) Performing minimization step: 3181. Total energy = 3246.8439 kcal/mol (3241.4304 without restraints) Performing minimization step: 3182. Total energy = 3246.7312 kcal/mol (3241.3190 without restraints) Performing minimization step: 3183. Total energy = 3246.6185 kcal/mol (3241.2075 without restraints) Performing minimization step: 3184. Total energy = 3246.5059 kcal/mol (3241.0960 without restraints) Performing minimization step: 3185. Total energy = 3246.3938 kcal/mol (3240.9852 without restraints) Performing minimization step: 3186. Total energy = 3246.2817 kcal/mol (3240.8743 without restraints) Performing minimization step: 3187. Total energy = 3246.1694 kcal/mol (3240.7633 without restraints) Performing minimization step: 3188. Total energy = 3246.0574 kcal/mol (3240.6525 without restraints) Performing minimization step: 3189. Total energy = 3245.9453 kcal/mol (3240.5416 without restraints) Performing minimization step: 3190. Total energy = 3245.8332 kcal/mol (3240.4307 without restraints) Performing minimization step: 3191. Total energy = 3245.7212 kcal/mol (3240.3199 without restraints) Performing minimization step: 3192. Total energy = 3245.6095 kcal/mol (3240.2094 without restraints) Performing minimization step: 3193. Total energy = 3245.4976 kcal/mol (3240.0987 without restraints) Performing minimization step: 3194. Total energy = 3245.3860 kcal/mol (3239.9884 without restraints) Performing minimization step: 3195. Total energy = 3245.2745 kcal/mol (3239.8780 without restraints) Performing minimization step: 3196. Total energy = 3245.1629 kcal/mol (3239.7676 without restraints) Performing minimization step: 3197. Total energy = 3245.0517 kcal/mol (3239.6576 without restraints) Performing minimization step: 3198. Total energy = 3244.9401 kcal/mol (3239.5471 without restraints) Performing minimization step: 3199. Total energy = 3244.8286 kcal/mol (3239.4369 without restraints) Performing minimization step: 3200. Total energy = 3244.7171 kcal/mol (3239.3265 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 3244.6057 kcal/mol (3239.2164 without restraints) Performing minimization step: 3202. Total energy = 3244.4947 kcal/mol (3239.1067 without restraints) Performing minimization step: 3203. Total energy = 3244.3839 kcal/mol (3238.9970 without restraints) Performing minimization step: 3204. Total energy = 3244.2729 kcal/mol (3238.8872 without restraints) Performing minimization step: 3205. Total energy = 3244.1618 kcal/mol (3238.7772 without restraints) Performing minimization step: 3206. Total energy = 3244.0508 kcal/mol (3238.6675 without restraints) Performing minimization step: 3207. Total energy = 3243.9400 kcal/mol (3238.5578 without restraints) Performing minimization step: 3208. Total energy = 3243.8292 kcal/mol (3238.4482 without restraints) Performing minimization step: 3209. Total energy = 3243.7182 kcal/mol (3238.3384 without restraints) Performing minimization step: 3210. Total energy = 3243.6073 kcal/mol (3238.2288 without restraints) Performing minimization step: 3211. Total energy = 3243.4968 kcal/mol (3238.1196 without restraints) Performing minimization step: 3212. Total energy = 3243.3865 kcal/mol (3238.0104 without restraints) Performing minimization step: 3213. Total energy = 3243.2761 kcal/mol (3237.9013 without restraints) Performing minimization step: 3214. Total energy = 3243.1657 kcal/mol (3237.7919 without restraints) Performing minimization step: 3215. Total energy = 3243.0548 kcal/mol (3237.6823 without restraints) Performing minimization step: 3216. Total energy = 3242.9442 kcal/mol (3237.5726 without restraints) Performing minimization step: 3217. Total energy = 3242.8335 kcal/mol (3237.4633 without restraints) Performing minimization step: 3218. Total energy = 3242.7234 kcal/mol (3237.3544 without restraints) Performing minimization step: 3219. Total energy = 3242.6135 kcal/mol (3237.2458 without restraints) Performing minimization step: 3220. Total energy = 3242.5030 kcal/mol (3237.1364 without restraints) Performing minimization step: 3221. Total energy = 3242.3929 kcal/mol (3237.0275 without restraints) Performing minimization step: 3222. Total energy = 3242.2826 kcal/mol (3236.9183 without restraints) Performing minimization step: 3223. Total energy = 3242.1726 kcal/mol (3236.8095 without restraints) Performing minimization step: 3224. Total energy = 3242.0626 kcal/mol (3236.7008 without restraints) Performing minimization step: 3225. Total energy = 3241.9527 kcal/mol (3236.5920 without restraints) Performing minimization step: 3226. Total energy = 3241.8429 kcal/mol (3236.4834 without restraints) Performing minimization step: 3227. Total energy = 3241.7329 kcal/mol (3236.3747 without restraints) Performing minimization step: 3228. Total energy = 3241.6233 kcal/mol (3236.2662 without restraints) Performing minimization step: 3229. Total energy = 3241.5137 kcal/mol (3236.1579 without restraints) Performing minimization step: 3230. Total energy = 3241.4039 kcal/mol (3236.0493 without restraints) Performing minimization step: 3231. Total energy = 3241.2944 kcal/mol (3235.9409 without restraints) Performing minimization step: 3232. Total energy = 3241.1850 kcal/mol (3235.8327 without restraints) Performing minimization step: 3233. Total energy = 3241.0756 kcal/mol (3235.7245 without restraints) Performing minimization step: 3234. Total energy = 3240.9663 kcal/mol (3235.6164 without restraints) Performing minimization step: 3235. Total energy = 3240.8570 kcal/mol (3235.5083 without restraints) Performing minimization step: 3236. Total energy = 3240.7483 kcal/mol (3235.4007 without restraints) Performing minimization step: 3237. Total energy = 3240.6391 kcal/mol (3235.2928 without restraints) Performing minimization step: 3238. Total energy = 3240.5305 kcal/mol (3235.1854 without restraints) Performing minimization step: 3239. Total energy = 3240.4215 kcal/mol (3235.0776 without restraints) Performing minimization step: 3240. Total energy = 3240.3119 kcal/mol (3234.9692 without restraints) Performing minimization step: 3241. Total energy = 3240.2032 kcal/mol (3234.8617 without restraints) Performing minimization step: 3242. Total energy = 3240.0943 kcal/mol (3234.7538 without restraints) Performing minimization step: 3243. Total energy = 3239.9855 kcal/mol (3234.6465 without restraints) Performing minimization step: 3244. Total energy = 3239.8772 kcal/mol (3234.5393 without restraints) Performing minimization step: 3245. Total energy = 3239.7687 kcal/mol (3234.4319 without restraints) Performing minimization step: 3246. Total energy = 3239.6601 kcal/mol (3234.3245 without restraints) Performing minimization step: 3247. Total energy = 3239.5516 kcal/mol (3234.2172 without restraints) Performing minimization step: 3248. Total energy = 3239.4431 kcal/mol (3234.1099 without restraints) Performing minimization step: 3249. Total energy = 3239.3345 kcal/mol (3234.0024 without restraints) Performing minimization step: 3250. Total energy = 3239.2264 kcal/mol (3233.8955 without restraints) Performing minimization step: 3251. Total energy = 3239.1181 kcal/mol (3233.7884 without restraints) Performing minimization step: 3252. Total energy = 3239.0098 kcal/mol (3233.6813 without restraints) Performing minimization step: 3253. Total energy = 3238.9014 kcal/mol (3233.5741 without restraints) Performing minimization step: 3254. Total energy = 3238.7933 kcal/mol (3233.4671 without restraints) Performing minimization step: 3255. Total energy = 3238.6852 kcal/mol (3233.3602 without restraints) Performing minimization step: 3256. Total energy = 3238.5772 kcal/mol (3233.2534 without restraints) Performing minimization step: 3257. Total energy = 3238.4689 kcal/mol (3233.1465 without restraints) Performing minimization step: 3258. Total energy = 3238.3612 kcal/mol (3233.0398 without restraints) Performing minimization step: 3259. Total energy = 3238.2534 kcal/mol (3232.9332 without restraints) Performing minimization step: 3260. Total energy = 3238.1454 kcal/mol (3232.8264 without restraints) Performing minimization step: 3261. Total energy = 3238.0377 kcal/mol (3232.7198 without restraints) Performing minimization step: 3262. Total energy = 3237.9304 kcal/mol (3232.6136 without restraints) Performing minimization step: 3263. Total energy = 3237.8227 kcal/mol (3232.5072 without restraints) Performing minimization step: 3264. Total energy = 3237.7154 kcal/mol (3232.4011 without restraints) Performing minimization step: 3265. Total energy = 3237.6078 kcal/mol (3232.2947 without restraints) Performing minimization step: 3266. Total energy = 3237.5004 kcal/mol (3232.1885 without restraints) Performing minimization step: 3267. Total energy = 3237.3930 kcal/mol (3232.0823 without restraints) Performing minimization step: 3268. Total energy = 3237.2855 kcal/mol (3231.9760 without restraints) Performing minimization step: 3269. Total energy = 3237.1781 kcal/mol (3231.8697 without restraints) Performing minimization step: 3270. Total energy = 3237.0710 kcal/mol (3231.7638 without restraints) Performing minimization step: 3271. Total energy = 3236.9640 kcal/mol (3231.6580 without restraints) Performing minimization step: 3272. Total energy = 3236.8569 kcal/mol (3231.5521 without restraints) Performing minimization step: 3273. Total energy = 3236.7499 kcal/mol (3231.4462 without restraints) Performing minimization step: 3274. Total energy = 3236.6432 kcal/mol (3231.3407 without restraints) Performing minimization step: 3275. Total energy = 3236.5357 kcal/mol (3231.2344 without restraints) Performing minimization step: 3276. Total energy = 3236.4290 kcal/mol (3231.1289 without restraints) Performing minimization step: 3277. Total energy = 3236.3222 kcal/mol (3231.0233 without restraints) Performing minimization step: 3278. Total energy = 3236.2158 kcal/mol (3230.9180 without restraints) Performing minimization step: 3279. Total energy = 3236.1099 kcal/mol (3230.8134 without restraints) Performing minimization step: 3280. Total energy = 3236.0039 kcal/mol (3230.7085 without restraints) Performing minimization step: 3281. Total energy = 3235.8974 kcal/mol (3230.6032 without restraints) Performing minimization step: 3282. Total energy = 3235.7906 kcal/mol (3230.4975 without restraints) Performing minimization step: 3283. Total energy = 3235.6842 kcal/mol (3230.3924 without restraints) Performing minimization step: 3284. Total energy = 3235.5782 kcal/mol (3230.2875 without restraints) Performing minimization step: 3285. Total energy = 3235.4719 kcal/mol (3230.1824 without restraints) Performing minimization step: 3286. Total energy = 3235.3655 kcal/mol (3230.0771 without restraints) Performing minimization step: 3287. Total energy = 3235.2595 kcal/mol (3229.9724 without restraints) Performing minimization step: 3288. Total energy = 3235.1535 kcal/mol (3229.8675 without restraints) Performing minimization step: 3289. Total energy = 3235.0474 kcal/mol (3229.7626 without restraints) Performing minimization step: 3290. Total energy = 3234.9413 kcal/mol (3229.6577 without restraints) Performing minimization step: 3291. Total energy = 3234.8354 kcal/mol (3229.5530 without restraints) Performing minimization step: 3292. Total energy = 3234.7296 kcal/mol (3229.4483 without restraints) Performing minimization step: 3293. Total energy = 3234.6240 kcal/mol (3229.3440 without restraints) Performing minimization step: 3294. Total energy = 3234.5181 kcal/mol (3229.2392 without restraints) Performing minimization step: 3295. Total energy = 3234.4119 kcal/mol (3229.1341 without restraints) Performing minimization step: 3296. Total energy = 3234.3065 kcal/mol (3229.0299 without restraints) Performing minimization step: 3297. Total energy = 3234.2008 kcal/mol (3228.9254 without restraints) Performing minimization step: 3298. Total energy = 3234.0953 kcal/mol (3228.8211 without restraints) Performing minimization step: 3299. Total energy = 3233.9899 kcal/mol (3228.7169 without restraints) Performing minimization step: 3300. Total energy = 3233.8847 kcal/mol (3228.6128 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 3233.7793 kcal/mol (3228.5086 without restraints) Performing minimization step: 3302. Total energy = 3233.6743 kcal/mol (3228.4047 without restraints) Performing minimization step: 3303. Total energy = 3233.5687 kcal/mol (3228.3004 without restraints) Performing minimization step: 3304. Total energy = 3233.4637 kcal/mol (3228.1965 without restraints) Performing minimization step: 3305. Total energy = 3233.3587 kcal/mol (3228.0927 without restraints) Performing minimization step: 3306. Total energy = 3233.2539 kcal/mol (3227.9891 without restraints) Performing minimization step: 3307. Total energy = 3233.1491 kcal/mol (3227.8855 without restraints) Performing minimization step: 3308. Total energy = 3233.0444 kcal/mol (3227.7821 without restraints) Performing minimization step: 3309. Total energy = 3232.9405 kcal/mol (3227.6792 without restraints) Performing minimization step: 3310. Total energy = 3232.8361 kcal/mol (3227.5759 without restraints) Performing minimization step: 3311. Total energy = 3232.7312 kcal/mol (3227.4722 without restraints) Performing minimization step: 3312. Total energy = 3232.6268 kcal/mol (3227.3691 without restraints) Performing minimization step: 3313. Total energy = 3232.5224 kcal/mol (3227.2658 without restraints) Performing minimization step: 3314. Total energy = 3232.4177 kcal/mol (3227.1621 without restraints) Performing minimization step: 3315. Total energy = 3232.3134 kcal/mol (3227.0591 without restraints) Performing minimization step: 3316. Total energy = 3232.2093 kcal/mol (3226.9562 without restraints) Performing minimization step: 3317. Total energy = 3232.1050 kcal/mol (3226.8531 without restraints) Performing minimization step: 3318. Total energy = 3232.0012 kcal/mol (3226.7506 without restraints) Performing minimization step: 3319. Total energy = 3231.8973 kcal/mol (3226.6478 without restraints) Performing minimization step: 3320. Total energy = 3231.7929 kcal/mol (3226.5447 without restraints) Performing minimization step: 3321. Total energy = 3231.6888 kcal/mol (3226.4416 without restraints) Performing minimization step: 3322. Total energy = 3231.5848 kcal/mol (3226.3386 without restraints) Performing minimization step: 3323. Total energy = 3231.4798 kcal/mol (3226.2350 without restraints) Performing minimization step: 3324. Total energy = 3231.3767 kcal/mol (3226.1330 without restraints) Performing minimization step: 3325. Total energy = 3231.2730 kcal/mol (3226.0305 without restraints) Performing minimization step: 3326. Total energy = 3231.1691 kcal/mol (3225.9276 without restraints) Performing minimization step: 3327. Total energy = 3231.0651 kcal/mol (3225.8249 without restraints) Performing minimization step: 3328. Total energy = 3230.9615 kcal/mol (3225.7225 without restraints) Performing minimization step: 3329. Total energy = 3230.8582 kcal/mol (3225.6204 without restraints) Performing minimization step: 3330. Total energy = 3230.7546 kcal/mol (3225.5180 without restraints) Performing minimization step: 3331. Total energy = 3230.6512 kcal/mol (3225.4156 without restraints) Performing minimization step: 3332. Total energy = 3230.5476 kcal/mol (3225.3133 without restraints) Performing minimization step: 3333. Total energy = 3230.4445 kcal/mol (3225.2113 without restraints) Performing minimization step: 3334. Total energy = 3230.3413 kcal/mol (3225.1093 without restraints) Performing minimization step: 3335. Total energy = 3230.2382 kcal/mol (3225.0072 without restraints) Performing minimization step: 3336. Total energy = 3230.1351 kcal/mol (3224.9054 without restraints) Performing minimization step: 3337. Total energy = 3230.0317 kcal/mol (3224.8032 without restraints) Performing minimization step: 3338. Total energy = 3229.9287 kcal/mol (3224.7013 without restraints) Performing minimization step: 3339. Total energy = 3229.8258 kcal/mol (3224.5995 without restraints) Performing minimization step: 3340. Total energy = 3229.7227 kcal/mol (3224.4977 without restraints) Performing minimization step: 3341. Total energy = 3229.6199 kcal/mol (3224.3962 without restraints) Performing minimization step: 3342. Total energy = 3229.5174 kcal/mol (3224.2947 without restraints) Performing minimization step: 3343. Total energy = 3229.4142 kcal/mol (3224.1926 without restraints) Performing minimization step: 3344. Total energy = 3229.3116 kcal/mol (3224.0913 without restraints) Performing minimization step: 3345. Total energy = 3229.2094 kcal/mol (3223.9902 without restraints) Performing minimization step: 3346. Total energy = 3229.1068 kcal/mol (3223.8887 without restraints) Performing minimization step: 3347. Total energy = 3229.0045 kcal/mol (3223.7877 without restraints) Performing minimization step: 3348. Total energy = 3228.9022 kcal/mol (3223.6865 without restraints) Performing minimization step: 3349. Total energy = 3228.8001 kcal/mol (3223.5857 without restraints) Performing minimization step: 3350. Total energy = 3228.6980 kcal/mol (3223.4847 without restraints) Performing minimization step: 3351. Total energy = 3228.5960 kcal/mol (3223.3837 without restraints) Performing minimization step: 3352. Total energy = 3228.4938 kcal/mol (3223.2828 without restraints) Performing minimization step: 3353. Total energy = 3228.3916 kcal/mol (3223.1817 without restraints) Performing minimization step: 3354. Total energy = 3228.2898 kcal/mol (3223.0811 without restraints) Performing minimization step: 3355. Total energy = 3228.1879 kcal/mol (3222.9803 without restraints) Performing minimization step: 3356. Total energy = 3228.0859 kcal/mol (3222.8795 without restraints) Performing minimization step: 3357. Total energy = 3227.9843 kcal/mol (3222.7791 without restraints) Performing minimization step: 3358. Total energy = 3227.8827 kcal/mol (3222.6787 without restraints) Performing minimization step: 3359. Total energy = 3227.7809 kcal/mol (3222.5781 without restraints) Performing minimization step: 3360. Total energy = 3227.6798 kcal/mol (3222.4781 without restraints) Performing minimization step: 3361. Total energy = 3227.5785 kcal/mol (3222.3779 without restraints) Performing minimization step: 3362. Total energy = 3227.4767 kcal/mol (3222.2773 without restraints) Performing minimization step: 3363. Total energy = 3227.3753 kcal/mol (3222.1771 without restraints) Performing minimization step: 3364. Total energy = 3227.2739 kcal/mol (3222.0768 without restraints) Performing minimization step: 3365. Total energy = 3227.1728 kcal/mol (3221.9770 without restraints) Performing minimization step: 3366. Total energy = 3227.0709 kcal/mol (3221.8761 without restraints) Performing minimization step: 3367. Total energy = 3226.9698 kcal/mol (3221.7762 without restraints) Performing minimization step: 3368. Total energy = 3226.8687 kcal/mol (3221.6763 without restraints) Performing minimization step: 3369. Total energy = 3226.7674 kcal/mol (3221.5762 without restraints) Performing minimization step: 3370. Total energy = 3226.6670 kcal/mol (3221.4769 without restraints) Performing minimization step: 3371. Total energy = 3226.5657 kcal/mol (3221.3768 without restraints) Performing minimization step: 3372. Total energy = 3226.4651 kcal/mol (3221.2774 without restraints) Performing minimization step: 3373. Total energy = 3226.3642 kcal/mol (3221.1777 without restraints) Performing minimization step: 3374. Total energy = 3226.2636 kcal/mol (3221.0782 without restraints) Performing minimization step: 3375. Total energy = 3226.1633 kcal/mol (3220.9791 without restraints) Performing minimization step: 3376. Total energy = 3226.0628 kcal/mol (3220.8797 without restraints) Performing minimization step: 3377. Total energy = 3225.9619 kcal/mol (3220.7800 without restraints) Performing minimization step: 3378. Total energy = 3225.8613 kcal/mol (3220.6805 without restraints) Performing minimization step: 3379. Total energy = 3225.7604 kcal/mol (3220.5808 without restraints) Performing minimization step: 3380. Total energy = 3225.6600 kcal/mol (3220.4816 without restraints) Performing minimization step: 3381. Total energy = 3225.5599 kcal/mol (3220.3828 without restraints) Performing minimization step: 3382. Total energy = 3225.4605 kcal/mol (3220.2845 without restraints) Performing minimization step: 3383. Total energy = 3225.3605 kcal/mol (3220.1855 without restraints) Performing minimization step: 3384. Total energy = 3225.2604 kcal/mol (3220.0867 without restraints) Performing minimization step: 3385. Total energy = 3225.1607 kcal/mol (3219.9882 without restraints) Performing minimization step: 3386. Total energy = 3225.0612 kcal/mol (3219.8898 without restraints) Performing minimization step: 3387. Total energy = 3224.9612 kcal/mol (3219.7909 without restraints) Performing minimization step: 3388. Total energy = 3224.8618 kcal/mol (3219.6926 without restraints) Performing minimization step: 3389. Total energy = 3224.7623 kcal/mol (3219.5943 without restraints) Performing minimization step: 3390. Total energy = 3224.6626 kcal/mol (3219.4958 without restraints) Performing minimization step: 3391. Total energy = 3224.5633 kcal/mol (3219.3977 without restraints) Performing minimization step: 3392. Total energy = 3224.4638 kcal/mol (3219.2993 without restraints) Performing minimization step: 3393. Total energy = 3224.3647 kcal/mol (3219.2014 without restraints) Performing minimization step: 3394. Total energy = 3224.2653 kcal/mol (3219.1031 without restraints) Performing minimization step: 3395. Total energy = 3224.1658 kcal/mol (3219.0047 without restraints) Performing minimization step: 3396. Total energy = 3224.0664 kcal/mol (3218.9065 without restraints) Performing minimization step: 3397. Total energy = 3223.9676 kcal/mol (3218.8089 without restraints) Performing minimization step: 3398. Total energy = 3223.8686 kcal/mol (3218.7111 without restraints) Performing minimization step: 3399. Total energy = 3223.7694 kcal/mol (3218.6129 without restraints) Performing minimization step: 3400. Total energy = 3223.6702 kcal/mol (3218.5150 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 3223.5712 kcal/mol (3218.4172 without restraints) Performing minimization step: 3402. Total energy = 3223.4722 kcal/mol (3218.3191 without restraints) Performing minimization step: 3403. Total energy = 3223.3734 kcal/mol (3218.2216 without restraints) Performing minimization step: 3404. Total energy = 3223.2750 kcal/mol (3218.1244 without restraints) Performing minimization step: 3405. Total energy = 3223.1758 kcal/mol (3218.0260 without restraints) Performing minimization step: 3406. Total energy = 3223.0766 kcal/mol (3217.9281 without restraints) Performing minimization step: 3407. Total energy = 3222.9777 kcal/mol (3217.8306 without restraints) Performing minimization step: 3408. Total energy = 3222.8791 kcal/mol (3217.7330 without restraints) Performing minimization step: 3409. Total energy = 3222.7799 kcal/mol (3217.6351 without restraints) Performing minimization step: 3410. Total energy = 3222.6817 kcal/mol (3217.5381 without restraints) Performing minimization step: 3411. Total energy = 3222.5827 kcal/mol (3217.4402 without restraints) Performing minimization step: 3412. Total energy = 3222.4844 kcal/mol (3217.3431 without restraints) Performing minimization step: 3413. Total energy = 3222.3868 kcal/mol (3217.2466 without restraints) Performing minimization step: 3414. Total energy = 3222.2886 kcal/mol (3217.1496 without restraints) Performing minimization step: 3415. Total energy = 3222.1908 kcal/mol (3217.0531 without restraints) Performing minimization step: 3416. Total energy = 3222.0927 kcal/mol (3216.9559 without restraints) Performing minimization step: 3417. Total energy = 3221.9947 kcal/mol (3216.8591 without restraints) Performing minimization step: 3418. Total energy = 3221.8970 kcal/mol (3216.7626 without restraints) Performing minimization step: 3419. Total energy = 3221.7990 kcal/mol (3216.6657 without restraints) Performing minimization step: 3420. Total energy = 3221.7009 kcal/mol (3216.5689 without restraints) Performing minimization step: 3421. Total energy = 3221.6026 kcal/mol (3216.4717 without restraints) Performing minimization step: 3422. Total energy = 3221.5047 kcal/mol (3216.3750 without restraints) Performing minimization step: 3423. Total energy = 3221.4069 kcal/mol (3216.2782 without restraints) Performing minimization step: 3424. Total energy = 3221.3093 kcal/mol (3216.1818 without restraints) Performing minimization step: 3425. Total energy = 3221.2118 kcal/mol (3216.0854 without restraints) Performing minimization step: 3426. Total energy = 3221.1137 kcal/mol (3215.9885 without restraints) Performing minimization step: 3427. Total energy = 3221.0159 kcal/mol (3215.8918 without restraints) Performing minimization step: 3428. Total energy = 3220.9181 kcal/mol (3215.7952 without restraints) Performing minimization step: 3429. Total energy = 3220.8208 kcal/mol (3215.6991 without restraints) Performing minimization step: 3430. Total energy = 3220.7233 kcal/mol (3215.6026 without restraints) Performing minimization step: 3431. Total energy = 3220.6259 kcal/mol (3215.5066 without restraints) Performing minimization step: 3432. Total energy = 3220.5289 kcal/mol (3215.4107 without restraints) Performing minimization step: 3433. Total energy = 3220.4319 kcal/mol (3215.3148 without restraints) Performing minimization step: 3434. Total energy = 3220.3348 kcal/mol (3215.2186 without restraints) Performing minimization step: 3435. Total energy = 3220.2374 kcal/mol (3215.1226 without restraints) Performing minimization step: 3436. Total energy = 3220.1407 kcal/mol (3215.0271 without restraints) Performing minimization step: 3437. Total energy = 3220.0439 kcal/mol (3214.9314 without restraints) Performing minimization step: 3438. Total energy = 3219.9471 kcal/mol (3214.8358 without restraints) Performing minimization step: 3439. Total energy = 3219.8504 kcal/mol (3214.7403 without restraints) Performing minimization step: 3440. Total energy = 3219.7536 kcal/mol (3214.6445 without restraints) Performing minimization step: 3441. Total energy = 3219.6566 kcal/mol (3214.5487 without restraints) Performing minimization step: 3442. Total energy = 3219.5600 kcal/mol (3214.4533 without restraints) Performing minimization step: 3443. Total energy = 3219.4636 kcal/mol (3214.3580 without restraints) Performing minimization step: 3444. Total energy = 3219.3676 kcal/mol (3214.2632 without restraints) Performing minimization step: 3445. Total energy = 3219.2710 kcal/mol (3214.1677 without restraints) Performing minimization step: 3446. Total energy = 3219.1747 kcal/mol (3214.0726 without restraints) Performing minimization step: 3447. Total energy = 3219.0785 kcal/mol (3213.9775 without restraints) Performing minimization step: 3448. Total energy = 3218.9818 kcal/mol (3213.8820 without restraints) Performing minimization step: 3449. Total energy = 3218.8859 kcal/mol (3213.7872 without restraints) Performing minimization step: 3450. Total energy = 3218.7901 kcal/mol (3213.6926 without restraints) Performing minimization step: 3451. Total energy = 3218.6941 kcal/mol (3213.5977 without restraints) Performing minimization step: 3452. Total energy = 3218.5981 kcal/mol (3213.5029 without restraints) Performing minimization step: 3453. Total energy = 3218.5023 kcal/mol (3213.4082 without restraints) Performing minimization step: 3454. Total energy = 3218.4062 kcal/mol (3213.3133 without restraints) Performing minimization step: 3455. Total energy = 3218.3105 kcal/mol (3213.2188 without restraints) Performing minimization step: 3456. Total energy = 3218.2145 kcal/mol (3213.1238 without restraints) Performing minimization step: 3457. Total energy = 3218.1188 kcal/mol (3213.0293 without restraints) Performing minimization step: 3458. Total energy = 3218.0232 kcal/mol (3212.9348 without restraints) Performing minimization step: 3459. Total energy = 3217.9272 kcal/mol (3212.8401 without restraints) Performing minimization step: 3460. Total energy = 3217.8320 kcal/mol (3212.7460 without restraints) Performing minimization step: 3461. Total energy = 3217.7364 kcal/mol (3212.6514 without restraints) Performing minimization step: 3462. Total energy = 3217.6406 kcal/mol (3212.5569 without restraints) Performing minimization step: 3463. Total energy = 3217.5451 kcal/mol (3212.4625 without restraints) Performing minimization step: 3464. Total energy = 3217.4495 kcal/mol (3212.3682 without restraints) Performing minimization step: 3465. Total energy = 3217.3543 kcal/mol (3212.2740 without restraints) Performing minimization step: 3466. Total energy = 3217.2594 kcal/mol (3212.1804 without restraints) Performing minimization step: 3467. Total energy = 3217.1647 kcal/mol (3212.0867 without restraints) Performing minimization step: 3468. Total energy = 3217.0697 kcal/mol (3211.9930 without restraints) Performing minimization step: 3469. Total energy = 3216.9747 kcal/mol (3211.8990 without restraints) Performing minimization step: 3470. Total energy = 3216.8795 kcal/mol (3211.8050 without restraints) Performing minimization step: 3471. Total energy = 3216.7846 kcal/mol (3211.7112 without restraints) Performing minimization step: 3472. Total energy = 3216.6899 kcal/mol (3211.6176 without restraints) Performing minimization step: 3473. Total energy = 3216.5952 kcal/mol (3211.5242 without restraints) Performing minimization step: 3474. Total energy = 3216.5003 kcal/mol (3211.4304 without restraints) Performing minimization step: 3475. Total energy = 3216.4055 kcal/mol (3211.3367 without restraints) Performing minimization step: 3476. Total energy = 3216.3107 kcal/mol (3211.2431 without restraints) Performing minimization step: 3477. Total energy = 3216.2163 kcal/mol (3211.1498 without restraints) Performing minimization step: 3478. Total energy = 3216.1217 kcal/mol (3211.0563 without restraints) Performing minimization step: 3479. Total energy = 3216.0273 kcal/mol (3210.9630 without restraints) Performing minimization step: 3480. Total energy = 3215.9333 kcal/mol (3210.8701 without restraints) Performing minimization step: 3481. Total energy = 3215.8389 kcal/mol (3210.7770 without restraints) Performing minimization step: 3482. Total energy = 3215.7447 kcal/mol (3210.6839 without restraints) Performing minimization step: 3483. Total energy = 3215.6506 kcal/mol (3210.5909 without restraints) Performing minimization step: 3484. Total energy = 3215.5565 kcal/mol (3210.4980 without restraints) Performing minimization step: 3485. Total energy = 3215.4629 kcal/mol (3210.4055 without restraints) Performing minimization step: 3486. Total energy = 3215.3688 kcal/mol (3210.3124 without restraints) Performing minimization step: 3487. Total energy = 3215.2748 kcal/mol (3210.2198 without restraints) Performing minimization step: 3488. Total energy = 3215.1809 kcal/mol (3210.1269 without restraints) Performing minimization step: 3489. Total energy = 3215.0869 kcal/mol (3210.0342 without restraints) Performing minimization step: 3490. Total energy = 3214.9936 kcal/mol (3209.9420 without restraints) Performing minimization step: 3491. Total energy = 3214.8999 kcal/mol (3209.8494 without restraints) Performing minimization step: 3492. Total energy = 3214.8060 kcal/mol (3209.7566 without restraints) Performing minimization step: 3493. Total energy = 3214.7123 kcal/mol (3209.6641 without restraints) Performing minimization step: 3494. Total energy = 3214.6189 kcal/mol (3209.5721 without restraints) Performing minimization step: 3495. Total energy = 3214.5256 kcal/mol (3209.4797 without restraints) Performing minimization step: 3496. Total energy = 3214.4324 kcal/mol (3209.3876 without restraints) Performing minimization step: 3497. Total energy = 3214.3388 kcal/mol (3209.2951 without restraints) Performing minimization step: 3498. Total energy = 3214.2454 kcal/mol (3209.2028 without restraints) Performing minimization step: 3499. Total energy = 3214.1517 kcal/mol (3209.1104 without restraints) Performing minimization step: 3500. Total energy = 3214.0585 kcal/mol (3209.0183 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 3213.9653 kcal/mol (3208.9263 without restraints) Performing minimization step: 3502. Total energy = 3213.8719 kcal/mol (3208.8339 without restraints) Performing minimization step: 3503. Total energy = 3213.7789 kcal/mol (3208.7421 without restraints) Performing minimization step: 3504. Total energy = 3213.6857 kcal/mol (3208.6501 without restraints) Performing minimization step: 3505. Total energy = 3213.5930 kcal/mol (3208.5585 without restraints) Performing minimization step: 3506. Total energy = 3213.4999 kcal/mol (3208.4665 without restraints) Performing minimization step: 3507. Total energy = 3213.4070 kcal/mol (3208.3748 without restraints) Performing minimization step: 3508. Total energy = 3213.3140 kcal/mol (3208.2829 without restraints) Performing minimization step: 3509. Total energy = 3213.2210 kcal/mol (3208.1911 without restraints) Performing minimization step: 3510. Total energy = 3213.1283 kcal/mol (3208.0994 without restraints) Performing minimization step: 3511. Total energy = 3213.0356 kcal/mol (3208.0079 without restraints) Performing minimization step: 3512. Total energy = 3212.9434 kcal/mol (3207.9168 without restraints) Performing minimization step: 3513. Total energy = 3212.8509 kcal/mol (3207.8255 without restraints) Performing minimization step: 3514. Total energy = 3212.7584 kcal/mol (3207.7341 without restraints) Performing minimization step: 3515. Total energy = 3212.6665 kcal/mol (3207.6434 without restraints) Performing minimization step: 3516. Total energy = 3212.5744 kcal/mol (3207.5524 without restraints) Performing minimization step: 3517. Total energy = 3212.4821 kcal/mol (3207.4613 without restraints) Performing minimization step: 3518. Total energy = 3212.3899 kcal/mol (3207.3701 without restraints) Performing minimization step: 3519. Total energy = 3212.2973 kcal/mol (3207.2788 without restraints) Performing minimization step: 3520. Total energy = 3212.2059 kcal/mol (3207.1885 without restraints) Performing minimization step: 3521. Total energy = 3212.1136 kcal/mol (3207.0973 without restraints) Performing minimization step: 3522. Total energy = 3212.0215 kcal/mol (3207.0063 without restraints) Performing minimization step: 3523. Total energy = 3211.9296 kcal/mol (3206.9155 without restraints) Performing minimization step: 3524. Total energy = 3211.8378 kcal/mol (3206.8249 without restraints) Performing minimization step: 3525. Total energy = 3211.7460 kcal/mol (3206.7344 without restraints) Performing minimization step: 3526. Total energy = 3211.6547 kcal/mol (3206.6443 without restraints) Performing minimization step: 3527. Total energy = 3211.5633 kcal/mol (3206.5539 without restraints) Performing minimization step: 3528. Total energy = 3211.4718 kcal/mol (3206.4634 without restraints) Performing minimization step: 3529. Total energy = 3211.3796 kcal/mol (3206.3724 without restraints) Performing minimization step: 3530. Total energy = 3211.2884 kcal/mol (3206.2823 without restraints) Performing minimization step: 3531. Total energy = 3211.1967 kcal/mol (3206.1918 without restraints) Performing minimization step: 3532. Total energy = 3211.1053 kcal/mol (3206.1015 without restraints) Performing minimization step: 3533. Total energy = 3211.0134 kcal/mol (3206.0107 without restraints) Performing minimization step: 3534. Total energy = 3210.9215 kcal/mol (3205.9200 without restraints) Performing minimization step: 3535. Total energy = 3210.8302 kcal/mol (3205.8298 without restraints) Performing minimization step: 3536. Total energy = 3210.7384 kcal/mol (3205.7392 without restraints) Performing minimization step: 3537. Total energy = 3210.6470 kcal/mol (3205.6489 without restraints) Performing minimization step: 3538. Total energy = 3210.5552 kcal/mol (3205.5581 without restraints) Performing minimization step: 3539. Total energy = 3210.4634 kcal/mol (3205.4674 without restraints) Performing minimization step: 3540. Total energy = 3210.3721 kcal/mol (3205.3774 without restraints) Performing minimization step: 3541. Total energy = 3210.2806 kcal/mol (3205.2870 without restraints) Performing minimization step: 3542. Total energy = 3210.1895 kcal/mol (3205.1972 without restraints) Performing minimization step: 3543. Total energy = 3210.0985 kcal/mol (3205.1072 without restraints) Performing minimization step: 3544. Total energy = 3210.0078 kcal/mol (3205.0176 without restraints) Performing minimization step: 3545. Total energy = 3209.9167 kcal/mol (3204.9275 without restraints) Performing minimization step: 3546. Total energy = 3209.8258 kcal/mol (3204.8378 without restraints) Performing minimization step: 3547. Total energy = 3209.7350 kcal/mol (3204.7482 without restraints) Performing minimization step: 3548. Total energy = 3209.6443 kcal/mol (3204.6586 without restraints) Performing minimization step: 3549. Total energy = 3209.5537 kcal/mol (3204.5691 without restraints) Performing minimization step: 3550. Total energy = 3209.4630 kcal/mol (3204.4796 without restraints) Performing minimization step: 3551. Total energy = 3209.3726 kcal/mol (3204.3903 without restraints) Performing minimization step: 3552. Total energy = 3209.2822 kcal/mol (3204.3011 without restraints) Performing minimization step: 3553. Total energy = 3209.1918 kcal/mol (3204.2119 without restraints) Performing minimization step: 3554. Total energy = 3209.1017 kcal/mol (3204.1228 without restraints) Performing minimization step: 3555. Total energy = 3209.0113 kcal/mol (3204.0336 without restraints) Performing minimization step: 3556. Total energy = 3208.9210 kcal/mol (3203.9444 without restraints) Performing minimization step: 3557. Total energy = 3208.8308 kcal/mol (3203.8552 without restraints) Performing minimization step: 3558. Total energy = 3208.7404 kcal/mol (3203.7660 without restraints) Performing minimization step: 3559. Total energy = 3208.6500 kcal/mol (3203.6768 without restraints) Performing minimization step: 3560. Total energy = 3208.5596 kcal/mol (3203.5876 without restraints) Performing minimization step: 3561. Total energy = 3208.4694 kcal/mol (3203.4984 without restraints) Performing minimization step: 3562. Total energy = 3208.3791 kcal/mol (3203.4092 without restraints) Performing minimization step: 3563. Total energy = 3208.2891 kcal/mol (3203.3204 without restraints) Performing minimization step: 3564. Total energy = 3208.1992 kcal/mol (3203.2316 without restraints) Performing minimization step: 3565. Total energy = 3208.1090 kcal/mol (3203.1426 without restraints) Performing minimization step: 3566. Total energy = 3208.0194 kcal/mol (3203.0541 without restraints) Performing minimization step: 3567. Total energy = 3207.9296 kcal/mol (3202.9654 without restraints) Performing minimization step: 3568. Total energy = 3207.8397 kcal/mol (3202.8766 without restraints) Performing minimization step: 3569. Total energy = 3207.7498 kcal/mol (3202.7878 without restraints) Performing minimization step: 3570. Total energy = 3207.6597 kcal/mol (3202.6989 without restraints) Performing minimization step: 3571. Total energy = 3207.5699 kcal/mol (3202.6102 without restraints) Performing minimization step: 3572. Total energy = 3207.4805 kcal/mol (3202.5220 without restraints) Performing minimization step: 3573. Total energy = 3207.3904 kcal/mol (3202.4330 without restraints) Performing minimization step: 3574. Total energy = 3207.3009 kcal/mol (3202.3446 without restraints) Performing minimization step: 3575. Total energy = 3207.2115 kcal/mol (3202.2563 without restraints) Performing minimization step: 3576. Total energy = 3207.1217 kcal/mol (3202.1677 without restraints) Performing minimization step: 3577. Total energy = 3207.0322 kcal/mol (3202.0794 without restraints) Performing minimization step: 3578. Total energy = 3206.9429 kcal/mol (3201.9910 without restraints) Performing minimization step: 3579. Total energy = 3206.8536 kcal/mol (3201.9029 without restraints) Performing minimization step: 3580. Total energy = 3206.7642 kcal/mol (3201.8147 without restraints) Performing minimization step: 3581. Total energy = 3206.6749 kcal/mol (3201.7265 without restraints) Performing minimization step: 3582. Total energy = 3206.5854 kcal/mol (3201.6381 without restraints) Performing minimization step: 3583. Total energy = 3206.4963 kcal/mol (3201.5501 without restraints) Performing minimization step: 3584. Total energy = 3206.4073 kcal/mol (3201.4622 without restraints) Performing minimization step: 3585. Total energy = 3206.3186 kcal/mol (3201.3747 without restraints) Performing minimization step: 3586. Total energy = 3206.2297 kcal/mol (3201.2869 without restraints) Performing minimization step: 3587. Total energy = 3206.1407 kcal/mol (3201.1989 without restraints) Performing minimization step: 3588. Total energy = 3206.0515 kcal/mol (3201.1110 without restraints) Performing minimization step: 3589. Total energy = 3205.9628 kcal/mol (3201.0234 without restraints) Performing minimization step: 3590. Total energy = 3205.8740 kcal/mol (3200.9357 without restraints) Performing minimization step: 3591. Total energy = 3205.7857 kcal/mol (3200.8486 without restraints) Performing minimization step: 3592. Total energy = 3205.6967 kcal/mol (3200.7607 without restraints) Performing minimization step: 3593. Total energy = 3205.6086 kcal/mol (3200.6736 without restraints) Performing minimization step: 3594. Total energy = 3205.5202 kcal/mol (3200.5865 without restraints) Performing minimization step: 3595. Total energy = 3205.4314 kcal/mol (3200.4987 without restraints) Performing minimization step: 3596. Total energy = 3205.3432 kcal/mol (3200.4117 without restraints) Performing minimization step: 3597. Total energy = 3205.2550 kcal/mol (3200.3247 without restraints) Performing minimization step: 3598. Total energy = 3205.1665 kcal/mol (3200.2372 without restraints) Performing minimization step: 3599. Total energy = 3205.0785 kcal/mol (3200.1503 without restraints) Performing minimization step: 3600. Total energy = 3204.9899 kcal/mol (3200.0628 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 3204.9017 kcal/mol (3199.9758 without restraints) Performing minimization step: 3602. Total energy = 3204.8136 kcal/mol (3199.8887 without restraints) Performing minimization step: 3603. Total energy = 3204.7257 kcal/mol (3199.8020 without restraints) Performing minimization step: 3604. Total energy = 3204.6380 kcal/mol (3199.7153 without restraints) Performing minimization step: 3605. Total energy = 3204.5497 kcal/mol (3199.6282 without restraints) Performing minimization step: 3606. Total energy = 3204.4620 kcal/mol (3199.5419 without restraints) Performing minimization step: 3607. Total energy = 3204.3744 kcal/mol (3199.4551 without restraints) Performing minimization step: 3608. Total energy = 3204.2864 kcal/mol (3199.3683 without restraints) Performing minimization step: 3609. Total energy = 3204.1986 kcal/mol (3199.2816 without restraints) Performing minimization step: 3610. Total energy = 3204.1110 kcal/mol (3199.1951 without restraints) Performing minimization step: 3611. Total energy = 3204.0234 kcal/mol (3199.1086 without restraints) Performing minimization step: 3612. Total energy = 3203.9360 kcal/mol (3199.0224 without restraints) Performing minimization step: 3613. Total energy = 3203.8478 kcal/mol (3198.9353 without restraints) Performing minimization step: 3614. Total energy = 3203.7600 kcal/mol (3198.8487 without restraints) Performing minimization step: 3615. Total energy = 3203.6727 kcal/mol (3198.7623 without restraints) Performing minimization step: 3616. Total energy = 3203.5851 kcal/mol (3198.6759 without restraints) Performing minimization step: 3617. Total energy = 3203.4982 kcal/mol (3198.5900 without restraints) Performing minimization step: 3618. Total energy = 3203.4106 kcal/mol (3198.5037 without restraints) Performing minimization step: 3619. Total energy = 3203.3231 kcal/mol (3198.4172 without restraints) Performing minimization step: 3620. Total energy = 3203.2359 kcal/mol (3198.3311 without restraints) Performing minimization step: 3621. Total energy = 3203.1490 kcal/mol (3198.2454 without restraints) Performing minimization step: 3622. Total energy = 3203.0617 kcal/mol (3198.1593 without restraints) Performing minimization step: 3623. Total energy = 3202.9747 kcal/mol (3198.0734 without restraints) Performing minimization step: 3624. Total energy = 3202.8876 kcal/mol (3197.9873 without restraints) Performing minimization step: 3625. Total energy = 3202.8002 kcal/mol (3197.9009 without restraints) Performing minimization step: 3626. Total energy = 3202.7130 kcal/mol (3197.8150 without restraints) Performing minimization step: 3627. Total energy = 3202.6262 kcal/mol (3197.7292 without restraints) Performing minimization step: 3628. Total energy = 3202.5394 kcal/mol (3197.6436 without restraints) Performing minimization step: 3629. Total energy = 3202.4525 kcal/mol (3197.5578 without restraints) Performing minimization step: 3630. Total energy = 3202.3659 kcal/mol (3197.4723 without restraints) Performing minimization step: 3631. Total energy = 3202.2791 kcal/mol (3197.3866 without restraints) Performing minimization step: 3632. Total energy = 3202.1930 kcal/mol (3197.3017 without restraints) Performing minimization step: 3633. Total energy = 3202.1064 kcal/mol (3197.2161 without restraints) Performing minimization step: 3634. Total energy = 3202.0198 kcal/mol (3197.1307 without restraints) Performing minimization step: 3635. Total energy = 3201.9331 kcal/mol (3197.0451 without restraints) Performing minimization step: 3636. Total energy = 3201.8464 kcal/mol (3196.9595 without restraints) Performing minimization step: 3637. Total energy = 3201.7597 kcal/mol (3196.8740 without restraints) Performing minimization step: 3638. Total energy = 3201.6733 kcal/mol (3196.7885 without restraints) Performing minimization step: 3639. Total energy = 3201.5867 kcal/mol (3196.7032 without restraints) Performing minimization step: 3640. Total energy = 3201.5003 kcal/mol (3196.6179 without restraints) Performing minimization step: 3641. Total energy = 3201.4143 kcal/mol (3196.5332 without restraints) Performing minimization step: 3642. Total energy = 3201.3282 kcal/mol (3196.4479 without restraints) Performing minimization step: 3643. Total energy = 3201.2418 kcal/mol (3196.3627 without restraints) Performing minimization step: 3644. Total energy = 3201.1554 kcal/mol (3196.2773 without restraints) Performing minimization step: 3645. Total energy = 3201.0693 kcal/mol (3196.1924 without restraints) Performing minimization step: 3646. Total energy = 3200.9831 kcal/mol (3196.1074 without restraints) Performing minimization step: 3647. Total energy = 3200.8966 kcal/mol (3196.0219 without restraints) Performing minimization step: 3648. Total energy = 3200.8104 kcal/mol (3195.9369 without restraints) Performing minimization step: 3649. Total energy = 3200.7242 kcal/mol (3195.8518 without restraints) Performing minimization step: 3650. Total energy = 3200.6378 kcal/mol (3195.7664 without restraints) Performing minimization step: 3651. Total energy = 3200.5517 kcal/mol (3195.6815 without restraints) Performing minimization step: 3652. Total energy = 3200.4660 kcal/mol (3195.5969 without restraints) Performing minimization step: 3653. Total energy = 3200.3801 kcal/mol (3195.5121 without restraints) Performing minimization step: 3654. Total energy = 3200.2940 kcal/mol (3195.4271 without restraints) Performing minimization step: 3655. Total energy = 3200.2082 kcal/mol (3195.3424 without restraints) Performing minimization step: 3656. Total energy = 3200.1222 kcal/mol (3195.2575 without restraints) Performing minimization step: 3657. Total energy = 3200.0364 kcal/mol (3195.1728 without restraints) Performing minimization step: 3658. Total energy = 3199.9506 kcal/mol (3195.0882 without restraints) Performing minimization step: 3659. Total energy = 3199.8653 kcal/mol (3195.0039 without restraints) Performing minimization step: 3660. Total energy = 3199.7795 kcal/mol (3194.9192 without restraints) Performing minimization step: 3661. Total energy = 3199.6942 kcal/mol (3194.8350 without restraints) Performing minimization step: 3662. Total energy = 3199.6088 kcal/mol (3194.7506 without restraints) Performing minimization step: 3663. Total energy = 3199.5234 kcal/mol (3194.6665 without restraints) Performing minimization step: 3664. Total energy = 3199.4381 kcal/mol (3194.5823 without restraints) Performing minimization step: 3665. Total energy = 3199.3527 kcal/mol (3194.4980 without restraints) Performing minimization step: 3666. Total energy = 3199.2675 kcal/mol (3194.4139 without restraints) Performing minimization step: 3667. Total energy = 3199.1823 kcal/mol (3194.3297 without restraints) Performing minimization step: 3668. Total energy = 3199.0970 kcal/mol (3194.2456 without restraints) Performing minimization step: 3669. Total energy = 3199.0116 kcal/mol (3194.1613 without restraints) Performing minimization step: 3670. Total energy = 3198.9266 kcal/mol (3194.0774 without restraints) Performing minimization step: 3671. Total energy = 3198.8419 kcal/mol (3193.9938 without restraints) Performing minimization step: 3672. Total energy = 3198.7568 kcal/mol (3193.9098 without restraints) Performing minimization step: 3673. Total energy = 3198.6719 kcal/mol (3193.8261 without restraints) Performing minimization step: 3674. Total energy = 3198.5868 kcal/mol (3193.7418 without restraints) Performing minimization step: 3675. Total energy = 3198.5016 kcal/mol (3193.6579 without restraints) Performing minimization step: 3676. Total energy = 3198.4165 kcal/mol (3193.5739 without restraints) Performing minimization step: 3677. Total energy = 3198.3317 kcal/mol (3193.4902 without restraints) Performing minimization step: 3678. Total energy = 3198.2467 kcal/mol (3193.4063 without restraints) Performing minimization step: 3679. Total energy = 3198.1623 kcal/mol (3193.3231 without restraints) Performing minimization step: 3680. Total energy = 3198.0772 kcal/mol (3193.2388 without restraints) Performing minimization step: 3681. Total energy = 3197.9922 kcal/mol (3193.1552 without restraints) Performing minimization step: 3682. Total energy = 3197.9075 kcal/mol (3193.0716 without restraints) Performing minimization step: 3683. Total energy = 3197.8234 kcal/mol (3192.9886 without restraints) Performing minimization step: 3684. Total energy = 3197.7388 kcal/mol (3192.9050 without restraints) Performing minimization step: 3685. Total energy = 3197.6545 kcal/mol (3192.8218 without restraints) Performing minimization step: 3686. Total energy = 3197.5700 kcal/mol (3192.7384 without restraints) Performing minimization step: 3687. Total energy = 3197.4856 kcal/mol (3192.6552 without restraints) Performing minimization step: 3688. Total energy = 3197.4012 kcal/mol (3192.5718 without restraints) Performing minimization step: 3689. Total energy = 3197.3169 kcal/mol (3192.4888 without restraints) Performing minimization step: 3690. Total energy = 3197.2325 kcal/mol (3192.4053 without restraints) Performing minimization step: 3691. Total energy = 3197.1482 kcal/mol (3192.3223 without restraints) Performing minimization step: 3692. Total energy = 3197.0634 kcal/mol (3192.2384 without restraints) Performing minimization step: 3693. Total energy = 3196.9793 kcal/mol (3192.1555 without restraints) Performing minimization step: 3694. Total energy = 3196.8948 kcal/mol (3192.0721 without restraints) Performing minimization step: 3695. Total energy = 3196.8107 kcal/mol (3191.9890 without restraints) Performing minimization step: 3696. Total energy = 3196.7266 kcal/mol (3191.9061 without restraints) Performing minimization step: 3697. Total energy = 3196.6426 kcal/mol (3191.8231 without restraints) Performing minimization step: 3698. Total energy = 3196.5583 kcal/mol (3191.7399 without restraints) Performing minimization step: 3699. Total energy = 3196.4743 kcal/mol (3191.6570 without restraints) Performing minimization step: 3700. Total energy = 3196.3903 kcal/mol (3191.5742 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 3196.3064 kcal/mol (3191.4913 without restraints) Performing minimization step: 3702. Total energy = 3196.2223 kcal/mol (3191.4082 without restraints) Performing minimization step: 3703. Total energy = 3196.1384 kcal/mol (3191.3256 without restraints) Performing minimization step: 3704. Total energy = 3196.0550 kcal/mol (3191.2433 without restraints) Performing minimization step: 3705. Total energy = 3195.9713 kcal/mol (3191.1608 without restraints) Performing minimization step: 3706. Total energy = 3195.8880 kcal/mol (3191.0784 without restraints) Performing minimization step: 3707. Total energy = 3195.8045 kcal/mol (3190.9960 without restraints) Performing minimization step: 3708. Total energy = 3195.7206 kcal/mol (3190.9132 without restraints) Performing minimization step: 3709. Total energy = 3195.6369 kcal/mol (3190.8306 without restraints) Performing minimization step: 3710. Total energy = 3195.5534 kcal/mol (3190.7481 without restraints) Performing minimization step: 3711. Total energy = 3195.4699 kcal/mol (3190.6659 without restraints) Performing minimization step: 3712. Total energy = 3195.3869 kcal/mol (3190.5839 without restraints) Performing minimization step: 3713. Total energy = 3195.3036 kcal/mol (3190.5017 without restraints) Performing minimization step: 3714. Total energy = 3195.2202 kcal/mol (3190.4194 without restraints) Performing minimization step: 3715. Total energy = 3195.1365 kcal/mol (3190.3368 without restraints) Performing minimization step: 3716. Total energy = 3195.0532 kcal/mol (3190.2545 without restraints) Performing minimization step: 3717. Total energy = 3194.9694 kcal/mol (3190.1719 without restraints) Performing minimization step: 3718. Total energy = 3194.8857 kcal/mol (3190.0892 without restraints) Performing minimization step: 3719. Total energy = 3194.8023 kcal/mol (3190.0069 without restraints) Performing minimization step: 3720. Total energy = 3194.7190 kcal/mol (3189.9246 without restraints) Performing minimization step: 3721. Total energy = 3194.6356 kcal/mol (3189.8425 without restraints) Performing minimization step: 3722. Total energy = 3194.5527 kcal/mol (3189.7606 without restraints) Performing minimization step: 3723. Total energy = 3194.4696 kcal/mol (3189.6785 without restraints) Performing minimization step: 3724. Total energy = 3194.3864 kcal/mol (3189.5965 without restraints) Performing minimization step: 3725. Total energy = 3194.3038 kcal/mol (3189.5150 without restraints) Performing minimization step: 3726. Total energy = 3194.2205 kcal/mol (3189.4329 without restraints) Performing minimization step: 3727. Total energy = 3194.1375 kcal/mol (3189.3509 without restraints) Performing minimization step: 3728. Total energy = 3194.0546 kcal/mol (3189.2691 without restraints) Performing minimization step: 3729. Total energy = 3193.9717 kcal/mol (3189.1873 without restraints) Performing minimization step: 3730. Total energy = 3193.8891 kcal/mol (3189.1058 without restraints) Performing minimization step: 3731. Total energy = 3193.8066 kcal/mol (3189.0243 without restraints) Performing minimization step: 3732. Total energy = 3193.7243 kcal/mol (3188.9431 without restraints) Performing minimization step: 3733. Total energy = 3193.6415 kcal/mol (3188.8613 without restraints) Performing minimization step: 3734. Total energy = 3193.5583 kcal/mol (3188.7793 without restraints) Performing minimization step: 3735. Total energy = 3193.4757 kcal/mol (3188.6977 without restraints) Performing minimization step: 3736. Total energy = 3193.3929 kcal/mol (3188.6161 without restraints) Performing minimization step: 3737. Total energy = 3193.3102 kcal/mol (3188.5344 without restraints) Performing minimization step: 3738. Total energy = 3193.2277 kcal/mol (3188.4530 without restraints) Performing minimization step: 3739. Total energy = 3193.1450 kcal/mol (3188.3714 without restraints) Performing minimization step: 3740. Total energy = 3193.0623 kcal/mol (3188.2898 without restraints) Performing minimization step: 3741. Total energy = 3192.9799 kcal/mol (3188.2085 without restraints) Performing minimization step: 3742. Total energy = 3192.8975 kcal/mol (3188.1271 without restraints) Performing minimization step: 3743. Total energy = 3192.8152 kcal/mol (3188.0462 without restraints) Performing minimization step: 3744. Total energy = 3192.7331 kcal/mol (3187.9650 without restraints) Performing minimization step: 3745. Total energy = 3192.6510 kcal/mol (3187.8839 without restraints) Performing minimization step: 3746. Total energy = 3192.5683 kcal/mol (3187.8023 without restraints) Performing minimization step: 3747. Total energy = 3192.4869 kcal/mol (3187.7220 without restraints) Performing minimization step: 3748. Total energy = 3192.4045 kcal/mol (3187.6407 without restraints) Performing minimization step: 3749. Total energy = 3192.3219 kcal/mol (3187.5592 without restraints) Performing minimization step: 3750. Total energy = 3192.2398 kcal/mol (3187.4782 without restraints) Performing minimization step: 3751. Total energy = 3192.1580 kcal/mol (3187.3975 without restraints) Performing minimization step: 3752. Total energy = 3192.0763 kcal/mol (3187.3169 without restraints) Performing minimization step: 3753. Total energy = 3191.9943 kcal/mol (3187.2358 without restraints) Performing minimization step: 3754. Total energy = 3191.9124 kcal/mol (3187.1552 without restraints) Performing minimization step: 3755. Total energy = 3191.8310 kcal/mol (3187.0749 without restraints) Performing minimization step: 3756. Total energy = 3191.7490 kcal/mol (3186.9936 without restraints) Performing minimization step: 3757. Total energy = 3191.6669 kcal/mol (3186.9129 without restraints) Performing minimization step: 3758. Total energy = 3191.5853 kcal/mol (3186.8322 without restraints) Performing minimization step: 3759. Total energy = 3191.5033 kcal/mol (3186.7513 without restraints) Performing minimization step: 3760. Total energy = 3191.4215 kcal/mol (3186.6707 without restraints) Performing minimization step: 3761. Total energy = 3191.3397 kcal/mol (3186.5899 without restraints) Performing minimization step: 3762. Total energy = 3191.2577 kcal/mol (3186.5091 without restraints) Performing minimization step: 3763. Total energy = 3191.1762 kcal/mol (3186.4287 without restraints) Performing minimization step: 3764. Total energy = 3191.0944 kcal/mol (3186.3479 without restraints) Performing minimization step: 3765. Total energy = 3191.0125 kcal/mol (3186.2670 without restraints) Performing minimization step: 3766. Total energy = 3190.9312 kcal/mol (3186.1870 without restraints) Performing minimization step: 3767. Total energy = 3190.8498 kcal/mol (3186.1064 without restraints) Performing minimization step: 3768. Total energy = 3190.7682 kcal/mol (3186.0261 without restraints) Performing minimization step: 3769. Total energy = 3190.6863 kcal/mol (3185.9452 without restraints) Performing minimization step: 3770. Total energy = 3190.6043 kcal/mol (3185.8642 without restraints) Performing minimization step: 3771. Total energy = 3190.5229 kcal/mol (3185.7840 without restraints) Performing minimization step: 3772. Total energy = 3190.4418 kcal/mol (3185.7040 without restraints) Performing minimization step: 3773. Total energy = 3190.3604 kcal/mol (3185.6236 without restraints) Performing minimization step: 3774. Total energy = 3190.2788 kcal/mol (3185.5432 without restraints) Performing minimization step: 3775. Total energy = 3190.1973 kcal/mol (3185.4627 without restraints) Performing minimization step: 3776. Total energy = 3190.1161 kcal/mol (3185.3826 without restraints) Performing minimization step: 3777. Total energy = 3190.0348 kcal/mol (3185.3024 without restraints) Performing minimization step: 3778. Total energy = 3189.9538 kcal/mol (3185.2225 without restraints) Performing minimization step: 3779. Total energy = 3189.8726 kcal/mol (3185.1423 without restraints) Performing minimization step: 3780. Total energy = 3189.7915 kcal/mol (3185.0623 without restraints) Performing minimization step: 3781. Total energy = 3189.7106 kcal/mol (3184.9824 without restraints) Performing minimization step: 3782. Total energy = 3189.6296 kcal/mol (3184.9025 without restraints) Performing minimization step: 3783. Total energy = 3189.5487 kcal/mol (3184.8228 without restraints) Performing minimization step: 3784. Total energy = 3189.4682 kcal/mol (3184.7434 without restraints) Performing minimization step: 3785. Total energy = 3189.3876 kcal/mol (3184.6638 without restraints) Performing minimization step: 3786. Total energy = 3189.3068 kcal/mol (3184.5840 without restraints) Performing minimization step: 3787. Total energy = 3189.2260 kcal/mol (3184.5043 without restraints) Performing minimization step: 3788. Total energy = 3189.1452 kcal/mol (3184.4246 without restraints) Performing minimization step: 3789. Total energy = 3189.0644 kcal/mol (3184.3449 without restraints) Performing minimization step: 3790. Total energy = 3188.9835 kcal/mol (3184.2651 without restraints) Performing minimization step: 3791. Total energy = 3188.9030 kcal/mol (3184.1857 without restraints) Performing minimization step: 3792. Total energy = 3188.8224 kcal/mol (3184.1062 without restraints) Performing minimization step: 3793. Total energy = 3188.7418 kcal/mol (3184.0266 without restraints) Performing minimization step: 3794. Total energy = 3188.6613 kcal/mol (3183.9471 without restraints) Performing minimization step: 3795. Total energy = 3188.5805 kcal/mol (3183.8674 without restraints) Performing minimization step: 3796. Total energy = 3188.5002 kcal/mol (3183.7883 without restraints) Performing minimization step: 3797. Total energy = 3188.4196 kcal/mol (3183.7087 without restraints) Performing minimization step: 3798. Total energy = 3188.3392 kcal/mol (3183.6293 without restraints) Performing minimization step: 3799. Total energy = 3188.2593 kcal/mol (3183.5505 without restraints) Performing minimization step: 3800. Total energy = 3188.1789 kcal/mol (3183.4712 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 3188.0988 kcal/mol (3183.3922 without restraints) Performing minimization step: 3802. Total energy = 3188.0186 kcal/mol (3183.3130 without restraints) Performing minimization step: 3803. Total energy = 3187.9381 kcal/mol (3183.2336 without restraints) Performing minimization step: 3804. Total energy = 3187.8578 kcal/mol (3183.1544 without restraints) Performing minimization step: 3805. Total energy = 3187.7777 kcal/mol (3183.0753 without restraints) Performing minimization step: 3806. Total energy = 3187.6978 kcal/mol (3182.9965 without restraints) Performing minimization step: 3807. Total energy = 3187.6178 kcal/mol (3182.9177 without restraints) Performing minimization step: 3808. Total energy = 3187.5377 kcal/mol (3182.8385 without restraints) Performing minimization step: 3809. Total energy = 3187.4578 kcal/mol (3182.7597 without restraints) Performing minimization step: 3810. Total energy = 3187.3777 kcal/mol (3182.6807 without restraints) Performing minimization step: 3811. Total energy = 3187.2982 kcal/mol (3182.6022 without restraints) Performing minimization step: 3812. Total energy = 3187.2183 kcal/mol (3182.5234 without restraints) Performing minimization step: 3813. Total energy = 3187.1382 kcal/mol (3182.4444 without restraints) Performing minimization step: 3814. Total energy = 3187.0591 kcal/mol (3182.3663 without restraints) Performing minimization step: 3815. Total energy = 3186.9793 kcal/mol (3182.2877 without restraints) Performing minimization step: 3816. Total energy = 3186.8995 kcal/mol (3182.2089 without restraints) Performing minimization step: 3817. Total energy = 3186.8200 kcal/mol (3182.1305 without restraints) Performing minimization step: 3818. Total energy = 3186.7401 kcal/mol (3182.0516 without restraints) Performing minimization step: 3819. Total energy = 3186.6604 kcal/mol (3181.9730 without restraints) Performing minimization step: 3820. Total energy = 3186.5807 kcal/mol (3181.8944 without restraints) Performing minimization step: 3821. Total energy = 3186.5009 kcal/mol (3181.8156 without restraints) Performing minimization step: 3822. Total energy = 3186.4211 kcal/mol (3181.7369 without restraints) Performing minimization step: 3823. Total energy = 3186.3411 kcal/mol (3181.6580 without restraints) Performing minimization step: 3824. Total energy = 3186.2616 kcal/mol (3181.5795 without restraints) Performing minimization step: 3825. Total energy = 3186.1818 kcal/mol (3181.5008 without restraints) Performing minimization step: 3826. Total energy = 3186.1028 kcal/mol (3181.4229 without restraints) Performing minimization step: 3827. Total energy = 3186.0240 kcal/mol (3181.3451 without restraints) Performing minimization step: 3828. Total energy = 3185.9446 kcal/mol (3181.2668 without restraints) Performing minimization step: 3829. Total energy = 3185.8652 kcal/mol (3181.1884 without restraints) Performing minimization step: 3830. Total energy = 3185.7857 kcal/mol (3181.1101 without restraints) Performing minimization step: 3831. Total energy = 3185.7066 kcal/mol (3181.0321 without restraints) Performing minimization step: 3832. Total energy = 3185.6275 kcal/mol (3180.9541 without restraints) Performing minimization step: 3833. Total energy = 3185.5486 kcal/mol (3180.8761 without restraints) Performing minimization step: 3834. Total energy = 3185.4696 kcal/mol (3180.7981 without restraints) Performing minimization step: 3835. Total energy = 3185.3901 kcal/mol (3180.7197 without restraints) Performing minimization step: 3836. Total energy = 3185.3111 kcal/mol (3180.6418 without restraints) Performing minimization step: 3837. Total energy = 3185.2316 kcal/mol (3180.5633 without restraints) Performing minimization step: 3838. Total energy = 3185.1529 kcal/mol (3180.4857 without restraints) Performing minimization step: 3839. Total energy = 3185.0740 kcal/mol (3180.4079 without restraints) Performing minimization step: 3840. Total energy = 3184.9948 kcal/mol (3180.3298 without restraints) Performing minimization step: 3841. Total energy = 3184.9158 kcal/mol (3180.2517 without restraints) Performing minimization step: 3842. Total energy = 3184.8371 kcal/mol (3180.1742 without restraints) Performing minimization step: 3843. Total energy = 3184.7582 kcal/mol (3180.0964 without restraints) Performing minimization step: 3844. Total energy = 3184.6792 kcal/mol (3180.0184 without restraints) Performing minimization step: 3845. Total energy = 3184.6004 kcal/mol (3179.9408 without restraints) Performing minimization step: 3846. Total energy = 3184.5218 kcal/mol (3179.8630 without restraints) Performing minimization step: 3847. Total energy = 3184.4425 kcal/mol (3179.7849 without restraints) Performing minimization step: 3848. Total energy = 3184.3638 kcal/mol (3179.7072 without restraints) Performing minimization step: 3849. Total energy = 3184.2854 kcal/mol (3179.6299 without restraints) Performing minimization step: 3850. Total energy = 3184.2071 kcal/mol (3179.5526 without restraints) Performing minimization step: 3851. Total energy = 3184.1284 kcal/mol (3179.4750 without restraints) Performing minimization step: 3852. Total energy = 3184.0500 kcal/mol (3179.3976 without restraints) Performing minimization step: 3853. Total energy = 3183.9715 kcal/mol (3179.3203 without restraints) Performing minimization step: 3854. Total energy = 3183.8933 kcal/mol (3179.2431 without restraints) Performing minimization step: 3855. Total energy = 3183.8150 kcal/mol (3179.1658 without restraints) Performing minimization step: 3856. Total energy = 3183.7364 kcal/mol (3179.0882 without restraints) Performing minimization step: 3857. Total energy = 3183.6575 kcal/mol (3179.0103 without restraints) Performing minimization step: 3858. Total energy = 3183.5788 kcal/mol (3178.9329 without restraints) Performing minimization step: 3859. Total energy = 3183.5005 kcal/mol (3178.8554 without restraints) Performing minimization step: 3860. Total energy = 3183.4222 kcal/mol (3178.7782 without restraints) Performing minimization step: 3861. Total energy = 3183.3440 kcal/mol (3178.7011 without restraints) Performing minimization step: 3862. Total energy = 3183.2654 kcal/mol (3178.6236 without restraints) Performing minimization step: 3863. Total energy = 3183.1872 kcal/mol (3178.5465 without restraints) Performing minimization step: 3864. Total energy = 3183.1090 kcal/mol (3178.4692 without restraints) Performing minimization step: 3865. Total energy = 3183.0308 kcal/mol (3178.3920 without restraints) Performing minimization step: 3866. Total energy = 3182.9522 kcal/mol (3178.3146 without restraints) Performing minimization step: 3867. Total energy = 3182.8736 kcal/mol (3178.2370 without restraints) Performing minimization step: 3868. Total energy = 3182.7955 kcal/mol (3178.1600 without restraints) Performing minimization step: 3869. Total energy = 3182.7176 kcal/mol (3178.0832 without restraints) Performing minimization step: 3870. Total energy = 3182.6390 kcal/mol (3178.0057 without restraints) Performing minimization step: 3871. Total energy = 3182.5610 kcal/mol (3177.9287 without restraints) Performing minimization step: 3872. Total energy = 3182.4832 kcal/mol (3177.8519 without restraints) Performing minimization step: 3873. Total energy = 3182.4052 kcal/mol (3177.7750 without restraints) Performing minimization step: 3874. Total energy = 3182.3272 kcal/mol (3177.6980 without restraints) Performing minimization step: 3875. Total energy = 3182.2489 kcal/mol (3177.6208 without restraints) Performing minimization step: 3876. Total energy = 3182.1711 kcal/mol (3177.5444 without restraints) Performing minimization step: 3877. Total energy = 3182.0937 kcal/mol (3177.4677 without restraints) Performing minimization step: 3878. Total energy = 3182.0159 kcal/mol (3177.3910 without restraints) Performing minimization step: 3879. Total energy = 3181.9381 kcal/mol (3177.3142 without restraints) Performing minimization step: 3880. Total energy = 3181.8602 kcal/mol (3177.2372 without restraints) Performing minimization step: 3881. Total energy = 3181.7824 kcal/mol (3177.1605 without restraints) Performing minimization step: 3882. Total energy = 3181.7048 kcal/mol (3177.0842 without restraints) Performing minimization step: 3883. Total energy = 3181.6272 kcal/mol (3177.0075 without restraints) Performing minimization step: 3884. Total energy = 3181.5495 kcal/mol (3176.9309 without restraints) Performing minimization step: 3885. Total energy = 3181.4714 kcal/mol (3176.8539 without restraints) Performing minimization step: 3886. Total energy = 3181.3937 kcal/mol (3176.7771 without restraints) Performing minimization step: 3887. Total energy = 3181.3161 kcal/mol (3176.7006 without restraints) Performing minimization step: 3888. Total energy = 3181.2384 kcal/mol (3176.6238 without restraints) Performing minimization step: 3889. Total energy = 3181.1608 kcal/mol (3176.5474 without restraints) Performing minimization step: 3890. Total energy = 3181.0833 kcal/mol (3176.4710 without restraints) Performing minimization step: 3891. Total energy = 3181.0058 kcal/mol (3176.3945 without restraints) Performing minimization step: 3892. Total energy = 3180.9287 kcal/mol (3176.3183 without restraints) Performing minimization step: 3893. Total energy = 3180.8510 kcal/mol (3176.2417 without restraints) Performing minimization step: 3894. Total energy = 3180.7736 kcal/mol (3176.1654 without restraints) Performing minimization step: 3895. Total energy = 3180.6963 kcal/mol (3176.0893 without restraints) Performing minimization step: 3896. Total energy = 3180.6193 kcal/mol (3176.0132 without restraints) Performing minimization step: 3897. Total energy = 3180.5422 kcal/mol (3175.9372 without restraints) Performing minimization step: 3898. Total energy = 3180.4650 kcal/mol (3175.8610 without restraints) Performing minimization step: 3899. Total energy = 3180.3876 kcal/mol (3175.7845 without restraints) Performing minimization step: 3900. Total energy = 3180.3103 kcal/mol (3175.7084 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 3180.2330 kcal/mol (3175.6320 without restraints) Performing minimization step: 3902. Total energy = 3180.1557 kcal/mol (3175.5559 without restraints) Performing minimization step: 3903. Total energy = 3180.0788 kcal/mol (3175.4800 without restraints) Performing minimization step: 3904. Total energy = 3180.0017 kcal/mol (3175.4039 without restraints) Performing minimization step: 3905. Total energy = 3179.9246 kcal/mol (3175.3279 without restraints) Performing minimization step: 3906. Total energy = 3179.8478 kcal/mol (3175.2521 without restraints) Performing minimization step: 3907. Total energy = 3179.7703 kcal/mol (3175.1757 without restraints) Performing minimization step: 3908. Total energy = 3179.6936 kcal/mol (3175.1000 without restraints) Performing minimization step: 3909. Total energy = 3179.6169 kcal/mol (3175.0244 without restraints) Performing minimization step: 3910. Total energy = 3179.5402 kcal/mol (3174.9486 without restraints) Performing minimization step: 3911. Total energy = 3179.4630 kcal/mol (3174.8723 without restraints) Performing minimization step: 3912. Total energy = 3179.3856 kcal/mol (3174.7962 without restraints) Performing minimization step: 3913. Total energy = 3179.3088 kcal/mol (3174.7204 without restraints) Performing minimization step: 3914. Total energy = 3179.2321 kcal/mol (3174.6447 without restraints) Performing minimization step: 3915. Total energy = 3179.1553 kcal/mol (3174.5690 without restraints) Performing minimization step: 3916. Total energy = 3179.0790 kcal/mol (3174.4937 without restraints) Performing minimization step: 3917. Total energy = 3179.0021 kcal/mol (3174.4178 without restraints) Performing minimization step: 3918. Total energy = 3178.9253 kcal/mol (3174.3422 without restraints) Performing minimization step: 3919. Total energy = 3178.8486 kcal/mol (3174.2665 without restraints) Performing minimization step: 3920. Total energy = 3178.7720 kcal/mol (3174.1909 without restraints) Performing minimization step: 3921. Total energy = 3178.6955 kcal/mol (3174.1155 without restraints) Performing minimization step: 3922. Total energy = 3178.6190 kcal/mol (3174.0399 without restraints) Performing minimization step: 3923. Total energy = 3178.5424 kcal/mol (3173.9644 without restraints) Performing minimization step: 3924. Total energy = 3178.4658 kcal/mol (3173.8889 without restraints) Performing minimization step: 3925. Total energy = 3178.3893 kcal/mol (3173.8134 without restraints) Performing minimization step: 3926. Total energy = 3178.3128 kcal/mol (3173.7379 without restraints) Performing minimization step: 3927. Total energy = 3178.2363 kcal/mol (3173.6624 without restraints) Performing minimization step: 3928. Total energy = 3178.1594 kcal/mol (3173.5866 without restraints) Performing minimization step: 3929. Total energy = 3178.0833 kcal/mol (3173.5115 without restraints) Performing minimization step: 3930. Total energy = 3178.0069 kcal/mol (3173.4361 without restraints) Performing minimization step: 3931. Total energy = 3177.9302 kcal/mol (3173.3604 without restraints) Performing minimization step: 3932. Total energy = 3177.8534 kcal/mol (3173.2848 without restraints) Performing minimization step: 3933. Total energy = 3177.7771 kcal/mol (3173.2096 without restraints) Performing minimization step: 3934. Total energy = 3177.7011 kcal/mol (3173.1345 without restraints) Performing minimization step: 3935. Total energy = 3177.6252 kcal/mol (3173.0596 without restraints) Performing minimization step: 3936. Total energy = 3177.5489 kcal/mol (3172.9844 without restraints) Performing minimization step: 3937. Total energy = 3177.4727 kcal/mol (3172.9093 without restraints) Performing minimization step: 3938. Total energy = 3177.3966 kcal/mol (3172.8341 without restraints) Performing minimization step: 3939. Total energy = 3177.3204 kcal/mol (3172.7590 without restraints) Performing minimization step: 3940. Total energy = 3177.2443 kcal/mol (3172.6839 without restraints) Performing minimization step: 3941. Total energy = 3177.1682 kcal/mol (3172.6089 without restraints) Performing minimization step: 3942. Total energy = 3177.0926 kcal/mol (3172.5343 without restraints) Performing minimization step: 3943. Total energy = 3177.0163 kcal/mol (3172.4590 without restraints) Performing minimization step: 3944. Total energy = 3176.9404 kcal/mol (3172.3841 without restraints) Performing minimization step: 3945. Total energy = 3176.8646 kcal/mol (3172.3094 without restraints) Performing minimization step: 3946. Total energy = 3176.7888 kcal/mol (3172.2346 without restraints) Performing minimization step: 3947. Total energy = 3176.7129 kcal/mol (3172.1597 without restraints) Performing minimization step: 3948. Total energy = 3176.6372 kcal/mol (3172.0853 without restraints) Performing minimization step: 3949. Total energy = 3176.5614 kcal/mol (3172.0104 without restraints) Performing minimization step: 3950. Total energy = 3176.4857 kcal/mol (3171.9356 without restraints) Performing minimization step: 3951. Total energy = 3176.4099 kcal/mol (3171.8609 without restraints) Performing minimization step: 3952. Total energy = 3176.3341 kcal/mol (3171.7860 without restraints) Performing minimization step: 3953. Total energy = 3176.2580 kcal/mol (3171.7110 without restraints) Performing minimization step: 3954. Total energy = 3176.1823 kcal/mol (3171.6363 without restraints) Performing minimization step: 3955. Total energy = 3176.1068 kcal/mol (3171.5619 without restraints) Performing minimization step: 3956. Total energy = 3176.0311 kcal/mol (3171.4872 without restraints) Performing minimization step: 3957. Total energy = 3175.9552 kcal/mol (3171.4123 without restraints) Performing minimization step: 3958. Total energy = 3175.8797 kcal/mol (3171.3381 without restraints) Performing minimization step: 3959. Total energy = 3175.8045 kcal/mol (3171.2637 without restraints) Performing minimization step: 3960. Total energy = 3175.7291 kcal/mol (3171.1893 without restraints) Performing minimization step: 3961. Total energy = 3175.6541 kcal/mol (3171.1154 without restraints) Performing minimization step: 3962. Total energy = 3175.5786 kcal/mol (3171.0408 without restraints) Performing minimization step: 3963. Total energy = 3175.5030 kcal/mol (3170.9663 without restraints) Performing minimization step: 3964. Total energy = 3175.4277 kcal/mol (3170.8920 without restraints) Performing minimization step: 3965. Total energy = 3175.3522 kcal/mol (3170.8176 without restraints) Performing minimization step: 3966. Total energy = 3175.2762 kcal/mol (3170.7425 without restraints) Performing minimization step: 3967. Total energy = 3175.2007 kcal/mol (3170.6681 without restraints) Performing minimization step: 3968. Total energy = 3175.1256 kcal/mol (3170.5940 without restraints) Performing minimization step: 3969. Total energy = 3175.0501 kcal/mol (3170.5197 without restraints) Performing minimization step: 3970. Total energy = 3174.9751 kcal/mol (3170.4456 without restraints) Performing minimization step: 3971. Total energy = 3174.9000 kcal/mol (3170.3715 without restraints) Performing minimization step: 3972. Total energy = 3174.8246 kcal/mol (3170.2971 without restraints) Performing minimization step: 3973. Total energy = 3174.7493 kcal/mol (3170.2228 without restraints) Performing minimization step: 3974. Total energy = 3174.6738 kcal/mol (3170.1484 without restraints) Performing minimization step: 3975. Total energy = 3174.5983 kcal/mol (3170.0738 without restraints) Performing minimization step: 3976. Total energy = 3174.5232 kcal/mol (3169.9999 without restraints) Performing minimization step: 3977. Total energy = 3174.4478 kcal/mol (3169.9254 without restraints) Performing minimization step: 3978. Total energy = 3174.3724 kcal/mol (3169.8511 without restraints) Performing minimization step: 3979. Total energy = 3174.2973 kcal/mol (3169.7770 without restraints) Performing minimization step: 3980. Total energy = 3174.2221 kcal/mol (3169.7028 without restraints) Performing minimization step: 3981. Total energy = 3174.1468 kcal/mol (3169.6285 without restraints) Performing minimization step: 3982. Total energy = 3174.0717 kcal/mol (3169.5545 without restraints) Performing minimization step: 3983. Total energy = 3173.9967 kcal/mol (3169.4805 without restraints) Performing minimization step: 3984. Total energy = 3173.9217 kcal/mol (3169.4065 without restraints) Performing minimization step: 3985. Total energy = 3173.8468 kcal/mol (3169.3327 without restraints) Performing minimization step: 3986. Total energy = 3173.7719 kcal/mol (3169.2588 without restraints) Performing minimization step: 3987. Total energy = 3173.6971 kcal/mol (3169.1850 without restraints) Performing minimization step: 3988. Total energy = 3173.6223 kcal/mol (3169.1111 without restraints) Performing minimization step: 3989. Total energy = 3173.5473 kcal/mol (3169.0372 without restraints) Performing minimization step: 3990. Total energy = 3173.4723 kcal/mol (3168.9632 without restraints) Performing minimization step: 3991. Total energy = 3173.3972 kcal/mol (3168.8891 without restraints) Performing minimization step: 3992. Total energy = 3173.3226 kcal/mol (3168.8156 without restraints) Performing minimization step: 3993. Total energy = 3173.2474 kcal/mol (3168.7414 without restraints) Performing minimization step: 3994. Total energy = 3173.1728 kcal/mol (3168.6678 without restraints) Performing minimization step: 3995. Total energy = 3173.0978 kcal/mol (3168.5936 without restraints) Performing minimization step: 3996. Total energy = 3173.0227 kcal/mol (3168.5197 without restraints) Performing minimization step: 3997. Total energy = 3172.9476 kcal/mol (3168.4456 without restraints) Performing minimization step: 3998. Total energy = 3172.8730 kcal/mol (3168.3721 without restraints) Performing minimization step: 3999. Total energy = 3172.7984 kcal/mol (3168.2985 without restraints) Performing minimization step: 4000. Total energy = 3172.7236 kcal/mol (3168.2247 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 3172.6488 kcal/mol (3168.1509 without restraints) Performing minimization step: 4002. Total energy = 3172.5742 kcal/mol (3168.0773 without restraints) Performing minimization step: 4003. Total energy = 3172.4996 kcal/mol (3168.0037 without restraints) Performing minimization step: 4004. Total energy = 3172.4253 kcal/mol (3167.9306 without restraints) Performing minimization step: 4005. Total energy = 3172.3508 kcal/mol (3167.8570 without restraints) Performing minimization step: 4006. Total energy = 3172.2763 kcal/mol (3167.7835 without restraints) Performing minimization step: 4007. Total energy = 3172.2019 kcal/mol (3167.7101 without restraints) Performing minimization step: 4008. Total energy = 3172.1277 kcal/mol (3167.6369 without restraints) Performing minimization step: 4009. Total energy = 3172.0532 kcal/mol (3167.5633 without restraints) Performing minimization step: 4010. Total energy = 3171.9786 kcal/mol (3167.4897 without restraints) Performing minimization step: 4011. Total energy = 3171.9041 kcal/mol (3167.4165 without restraints) Performing minimization step: 4012. Total energy = 3171.8301 kcal/mol (3167.3434 without restraints) Performing minimization step: 4013. Total energy = 3171.7558 kcal/mol (3167.2701 without restraints) Performing minimization step: 4014. Total energy = 3171.6813 kcal/mol (3167.1966 without restraints) Performing minimization step: 4015. Total energy = 3171.6069 kcal/mol (3167.1232 without restraints) Performing minimization step: 4016. Total energy = 3171.5327 kcal/mol (3167.0500 without restraints) Performing minimization step: 4017. Total energy = 3171.4586 kcal/mol (3166.9770 without restraints) Performing minimization step: 4018. Total energy = 3171.3844 kcal/mol (3166.9037 without restraints) Performing minimization step: 4019. Total energy = 3171.3102 kcal/mol (3166.8306 without restraints) Performing minimization step: 4020. Total energy = 3171.2360 kcal/mol (3166.7574 without restraints) Performing minimization step: 4021. Total energy = 3171.1618 kcal/mol (3166.6842 without restraints) Performing minimization step: 4022. Total energy = 3171.0877 kcal/mol (3166.6111 without restraints) Performing minimization step: 4023. Total energy = 3171.0136 kcal/mol (3166.5379 without restraints) Performing minimization step: 4024. Total energy = 3170.9397 kcal/mol (3166.4651 without restraints) Performing minimization step: 4025. Total energy = 3170.8658 kcal/mol (3166.3922 without restraints) Performing minimization step: 4026. Total energy = 3170.7916 kcal/mol (3166.3190 without restraints) Performing minimization step: 4027. Total energy = 3170.7173 kcal/mol (3166.2458 without restraints) Performing minimization step: 4028. Total energy = 3170.6435 kcal/mol (3166.1729 without restraints) Performing minimization step: 4029. Total energy = 3170.5696 kcal/mol (3166.0999 without restraints) Performing minimization step: 4030. Total energy = 3170.4955 kcal/mol (3166.0270 without restraints) Performing minimization step: 4031. Total energy = 3170.4215 kcal/mol (3165.9540 without restraints) Performing minimization step: 4032. Total energy = 3170.3476 kcal/mol (3165.8810 without restraints) Performing minimization step: 4033. Total energy = 3170.2737 kcal/mol (3165.8081 without restraints) Performing minimization step: 4034. Total energy = 3170.1999 kcal/mol (3165.7354 without restraints) Performing minimization step: 4035. Total energy = 3170.1262 kcal/mol (3165.6627 without restraints) Performing minimization step: 4036. Total energy = 3170.0524 kcal/mol (3165.5898 without restraints) Performing minimization step: 4037. Total energy = 3169.9788 kcal/mol (3165.5172 without restraints) Performing minimization step: 4038. Total energy = 3169.9050 kcal/mol (3165.4445 without restraints) Performing minimization step: 4039. Total energy = 3169.8313 kcal/mol (3165.3718 without restraints) Performing minimization step: 4040. Total energy = 3169.7572 kcal/mol (3165.2985 without restraints) Performing minimization step: 4041. Total energy = 3169.6831 kcal/mol (3165.2256 without restraints) Performing minimization step: 4042. Total energy = 3169.6098 kcal/mol (3165.1533 without restraints) Performing minimization step: 4043. Total energy = 3169.5361 kcal/mol (3165.0806 without restraints) Performing minimization step: 4044. Total energy = 3169.4624 kcal/mol (3165.0078 without restraints) Performing minimization step: 4045. Total energy = 3169.3886 kcal/mol (3164.9352 without restraints) Performing minimization step: 4046. Total energy = 3169.3151 kcal/mol (3164.8626 without restraints) Performing minimization step: 4047. Total energy = 3169.2419 kcal/mol (3164.7905 without restraints) Performing minimization step: 4048. Total energy = 3169.1686 kcal/mol (3164.7181 without restraints) Performing minimization step: 4049. Total energy = 3169.0950 kcal/mol (3164.6455 without restraints) Performing minimization step: 4050. Total energy = 3169.0216 kcal/mol (3164.5732 without restraints) Performing minimization step: 4051. Total energy = 3168.9478 kcal/mol (3164.5003 without restraints) Performing minimization step: 4052. Total energy = 3168.8739 kcal/mol (3164.4274 without restraints) Performing minimization step: 4053. Total energy = 3168.8004 kcal/mol (3164.3549 without restraints) Performing minimization step: 4054. Total energy = 3168.7271 kcal/mol (3164.2826 without restraints) Performing minimization step: 4055. Total energy = 3168.6537 kcal/mol (3164.2102 without restraints) Performing minimization step: 4056. Total energy = 3168.5804 kcal/mol (3164.1380 without restraints) Performing minimization step: 4057. Total energy = 3168.5069 kcal/mol (3164.0653 without restraints) Performing minimization step: 4058. Total energy = 3168.4333 kcal/mol (3163.9927 without restraints) Performing minimization step: 4059. Total energy = 3168.3599 kcal/mol (3163.9203 without restraints) Performing minimization step: 4060. Total energy = 3168.2865 kcal/mol (3163.8479 without restraints) Performing minimization step: 4061. Total energy = 3168.2136 kcal/mol (3163.7761 without restraints) Performing minimization step: 4062. Total energy = 3168.1405 kcal/mol (3163.7040 without restraints) Performing minimization step: 4063. Total energy = 3168.0674 kcal/mol (3163.6319 without restraints) Performing minimization step: 4064. Total energy = 3167.9941 kcal/mol (3163.5596 without restraints) Performing minimization step: 4065. Total energy = 3167.9206 kcal/mol (3163.4869 without restraints) Performing minimization step: 4066. Total energy = 3167.8471 kcal/mol (3163.4146 without restraints) Performing minimization step: 4067. Total energy = 3167.7733 kcal/mol (3163.3418 without restraints) Performing minimization step: 4068. Total energy = 3167.7001 kcal/mol (3163.2696 without restraints) Performing minimization step: 4069. Total energy = 3167.6269 kcal/mol (3163.1974 without restraints) Performing minimization step: 4070. Total energy = 3167.5537 kcal/mol (3163.1250 without restraints) Performing minimization step: 4071. Total energy = 3167.4806 kcal/mol (3163.0530 without restraints) Performing minimization step: 4072. Total energy = 3167.4075 kcal/mol (3162.9809 without restraints) Performing minimization step: 4073. Total energy = 3167.3345 kcal/mol (3162.9089 without restraints) Performing minimization step: 4074. Total energy = 3167.2615 kcal/mol (3162.8370 without restraints) Performing minimization step: 4075. Total energy = 3167.1887 kcal/mol (3162.7652 without restraints) Performing minimization step: 4076. Total energy = 3167.1155 kcal/mol (3162.6929 without restraints) Performing minimization step: 4077. Total energy = 3167.0424 kcal/mol (3162.6208 without restraints) Performing minimization step: 4078. Total energy = 3166.9691 kcal/mol (3162.5485 without restraints) Performing minimization step: 4079. Total energy = 3166.8961 kcal/mol (3162.4765 without restraints) Performing minimization step: 4080. Total energy = 3166.8233 kcal/mol (3162.4047 without restraints) Performing minimization step: 4081. Total energy = 3166.7505 kcal/mol (3162.3328 without restraints) Performing minimization step: 4082. Total energy = 3166.6775 kcal/mol (3162.2609 without restraints) Performing minimization step: 4083. Total energy = 3166.6048 kcal/mol (3162.1891 without restraints) Performing minimization step: 4084. Total energy = 3166.5318 kcal/mol (3162.1172 without restraints) Performing minimization step: 4085. Total energy = 3166.4589 kcal/mol (3162.0452 without restraints) Performing minimization step: 4086. Total energy = 3166.3859 kcal/mol (3161.9731 without restraints) Performing minimization step: 4087. Total energy = 3166.3129 kcal/mol (3161.9013 without restraints) Performing minimization step: 4088. Total energy = 3166.2401 kcal/mol (3161.8294 without restraints) Performing minimization step: 4089. Total energy = 3166.1671 kcal/mol (3161.7574 without restraints) Performing minimization step: 4090. Total energy = 3166.0941 kcal/mol (3161.6853 without restraints) Performing minimization step: 4091. Total energy = 3166.0213 kcal/mol (3161.6135 without restraints) Performing minimization step: 4092. Total energy = 3165.9484 kcal/mol (3161.5415 without restraints) Performing minimization step: 4093. Total energy = 3165.8759 kcal/mol (3161.4701 without restraints) Performing minimization step: 4094. Total energy = 3165.8031 kcal/mol (3161.3982 without restraints) Performing minimization step: 4095. Total energy = 3165.7303 kcal/mol (3161.3266 without restraints) Performing minimization step: 4096. Total energy = 3165.6576 kcal/mol (3161.2548 without restraints) Performing minimization step: 4097. Total energy = 3165.5851 kcal/mol (3161.1833 without restraints) Performing minimization step: 4098. Total energy = 3165.5126 kcal/mol (3161.1118 without restraints) Performing minimization step: 4099. Total energy = 3165.4401 kcal/mol (3161.0403 without restraints) Performing minimization step: 4100. Total energy = 3165.3675 kcal/mol (3160.9686 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 3165.2951 kcal/mol (3160.8971 without restraints) Performing minimization step: 4102. Total energy = 3165.2228 kcal/mol (3160.8257 without restraints) Performing minimization step: 4103. Total energy = 3165.1495 kcal/mol (3160.7536 without restraints) Performing minimization step: 4104. Total energy = 3165.0769 kcal/mol (3160.6819 without restraints) Performing minimization step: 4105. Total energy = 3165.0043 kcal/mol (3160.6103 without restraints) Performing minimization step: 4106. Total energy = 3164.9315 kcal/mol (3160.5385 without restraints) Performing minimization step: 4107. Total energy = 3164.8589 kcal/mol (3160.4669 without restraints) Performing minimization step: 4108. Total energy = 3164.7863 kcal/mol (3160.3953 without restraints) Performing minimization step: 4109. Total energy = 3164.7138 kcal/mol (3160.3238 without restraints) Performing minimization step: 4110. Total energy = 3164.6411 kcal/mol (3160.2520 without restraints) Performing minimization step: 4111. Total energy = 3164.5686 kcal/mol (3160.1805 without restraints) Performing minimization step: 4112. Total energy = 3164.4962 kcal/mol (3160.1091 without restraints) Performing minimization step: 4113. Total energy = 3164.4239 kcal/mol (3160.0379 without restraints) Performing minimization step: 4114. Total energy = 3164.3515 kcal/mol (3159.9664 without restraints) Performing minimization step: 4115. Total energy = 3164.2787 kcal/mol (3159.8945 without restraints) Performing minimization step: 4116. Total energy = 3164.2063 kcal/mol (3159.8231 without restraints) Performing minimization step: 4117. Total energy = 3164.1339 kcal/mol (3159.7517 without restraints) Performing minimization step: 4118. Total energy = 3164.0613 kcal/mol (3159.6800 without restraints) Performing minimization step: 4119. Total energy = 3163.9890 kcal/mol (3159.6088 without restraints) Performing minimization step: 4120. Total energy = 3163.9172 kcal/mol (3159.5379 without restraints) Performing minimization step: 4121. Total energy = 3163.8448 kcal/mol (3159.4665 without restraints) Performing minimization step: 4122. Total energy = 3163.7728 kcal/mol (3159.3954 without restraints) Performing minimization step: 4123. Total energy = 3163.7000 kcal/mol (3159.3236 without restraints) Performing minimization step: 4124. Total energy = 3163.6282 kcal/mol (3159.2528 without restraints) Performing minimization step: 4125. Total energy = 3163.5560 kcal/mol (3159.1817 without restraints) Performing minimization step: 4126. Total energy = 3163.4836 kcal/mol (3159.1102 without restraints) Performing minimization step: 4127. Total energy = 3163.4113 kcal/mol (3159.0389 without restraints) Performing minimization step: 4128. Total energy = 3163.3392 kcal/mol (3158.9677 without restraints) Performing minimization step: 4129. Total energy = 3163.2669 kcal/mol (3158.8964 without restraints) Performing minimization step: 4130. Total energy = 3163.1947 kcal/mol (3158.8251 without restraints) Performing minimization step: 4131. Total energy = 3163.1224 kcal/mol (3158.7539 without restraints) Performing minimization step: 4132. Total energy = 3163.0503 kcal/mol (3158.6827 without restraints) Performing minimization step: 4133. Total energy = 3162.9779 kcal/mol (3158.6113 without restraints) Performing minimization step: 4134. Total energy = 3162.9062 kcal/mol (3158.5406 without restraints) Performing minimization step: 4135. Total energy = 3162.8341 kcal/mol (3158.4694 without restraints) Performing minimization step: 4136. Total energy = 3162.7618 kcal/mol (3158.3982 without restraints) Performing minimization step: 4137. Total energy = 3162.6895 kcal/mol (3158.3268 without restraints) Performing minimization step: 4138. Total energy = 3162.6177 kcal/mol (3158.2559 without restraints) Performing minimization step: 4139. Total energy = 3162.5455 kcal/mol (3158.1848 without restraints) Performing minimization step: 4140. Total energy = 3162.4735 kcal/mol (3158.1136 without restraints) Performing minimization step: 4141. Total energy = 3162.4012 kcal/mol (3158.0424 without restraints) Performing minimization step: 4142. Total energy = 3162.3293 kcal/mol (3157.9713 without restraints) Performing minimization step: 4143. Total energy = 3162.2572 kcal/mol (3157.9002 without restraints) Performing minimization step: 4144. Total energy = 3162.1854 kcal/mol (3157.8294 without restraints) Performing minimization step: 4145. Total energy = 3162.1127 kcal/mol (3157.7577 without restraints) Performing minimization step: 4146. Total energy = 3162.0404 kcal/mol (3157.6864 without restraints) Performing minimization step: 4147. Total energy = 3161.9684 kcal/mol (3157.6154 without restraints) Performing minimization step: 4148. Total energy = 3161.8964 kcal/mol (3157.5443 without restraints) Performing minimization step: 4149. Total energy = 3161.8247 kcal/mol (3157.4736 without restraints) Performing minimization step: 4150. Total energy = 3161.7526 kcal/mol (3157.4025 without restraints) Performing minimization step: 4151. Total energy = 3161.6809 kcal/mol (3157.3318 without restraints) Performing minimization step: 4152. Total energy = 3161.6090 kcal/mol (3157.2608 without restraints) Performing minimization step: 4153. Total energy = 3161.5371 kcal/mol (3157.1899 without restraints) Performing minimization step: 4154. Total energy = 3161.4649 kcal/mol (3157.1187 without restraints) Performing minimization step: 4155. Total energy = 3161.3932 kcal/mol (3157.0478 without restraints) Performing minimization step: 4156. Total energy = 3161.3211 kcal/mol (3156.9767 without restraints) Performing minimization step: 4157. Total energy = 3161.2490 kcal/mol (3156.9057 without restraints) Performing minimization step: 4158. Total energy = 3161.1772 kcal/mol (3156.8348 without restraints) Performing minimization step: 4159. Total energy = 3161.1056 kcal/mol (3156.7641 without restraints) Performing minimization step: 4160. Total energy = 3161.0340 kcal/mol (3156.6935 without restraints) Performing minimization step: 4161. Total energy = 3160.9621 kcal/mol (3156.6226 without restraints) Performing minimization step: 4162. Total energy = 3160.8903 kcal/mol (3156.5517 without restraints) Performing minimization step: 4163. Total energy = 3160.8183 kcal/mol (3156.4807 without restraints) Performing minimization step: 4164. Total energy = 3160.7464 kcal/mol (3156.4098 without restraints) Performing minimization step: 4165. Total energy = 3160.6745 kcal/mol (3156.3388 without restraints) Performing minimization step: 4166. Total energy = 3160.6027 kcal/mol (3156.2680 without restraints) Performing minimization step: 4167. Total energy = 3160.5310 kcal/mol (3156.1973 without restraints) Performing minimization step: 4168. Total energy = 3160.4592 kcal/mol (3156.1264 without restraints) Performing minimization step: 4169. Total energy = 3160.3870 kcal/mol (3156.0552 without restraints) Performing minimization step: 4170. Total energy = 3160.3150 kcal/mol (3155.9842 without restraints) Performing minimization step: 4171. Total energy = 3160.2433 kcal/mol (3155.9133 without restraints) Performing minimization step: 4172. Total energy = 3160.1717 kcal/mol (3155.8427 without restraints) Performing minimization step: 4173. Total energy = 3160.1000 kcal/mol (3155.7719 without restraints) Performing minimization step: 4174. Total energy = 3160.0289 kcal/mol (3155.7018 without restraints) Performing minimization step: 4175. Total energy = 3159.9571 kcal/mol (3155.6310 without restraints) Performing minimization step: 4176. Total energy = 3159.8853 kcal/mol (3155.5602 without restraints) Performing minimization step: 4177. Total energy = 3159.8140 kcal/mol (3155.4898 without restraints) Performing minimization step: 4178. Total energy = 3159.7422 kcal/mol (3155.4190 without restraints) Performing minimization step: 4179. Total energy = 3159.6704 kcal/mol (3155.3481 without restraints) Performing minimization step: 4180. Total energy = 3159.5987 kcal/mol (3155.2773 without restraints) Performing minimization step: 4181. Total energy = 3159.5277 kcal/mol (3155.2074 without restraints) Performing minimization step: 4182. Total energy = 3159.4563 kcal/mol (3155.1369 without restraints) Performing minimization step: 4183. Total energy = 3159.3846 kcal/mol (3155.0661 without restraints) Performing minimization step: 4184. Total energy = 3159.3127 kcal/mol (3154.9952 without restraints) Performing minimization step: 4185. Total energy = 3159.2410 kcal/mol (3154.9245 without restraints) Performing minimization step: 4186. Total energy = 3159.1693 kcal/mol (3154.8536 without restraints) Performing minimization step: 4187. Total energy = 3159.0977 kcal/mol (3154.7831 without restraints) Performing minimization step: 4188. Total energy = 3159.0260 kcal/mol (3154.7122 without restraints) Performing minimization step: 4189. Total energy = 3158.9542 kcal/mol (3154.6415 without restraints) Performing minimization step: 4190. Total energy = 3158.8830 kcal/mol (3154.5711 without restraints) Performing minimization step: 4191. Total energy = 3158.8112 kcal/mol (3154.5003 without restraints) Performing minimization step: 4192. Total energy = 3158.7393 kcal/mol (3154.4294 without restraints) Performing minimization step: 4193. Total energy = 3158.6677 kcal/mol (3154.3587 without restraints) Performing minimization step: 4194. Total energy = 3158.5960 kcal/mol (3154.2880 without restraints) Performing minimization step: 4195. Total energy = 3158.5241 kcal/mol (3154.2169 without restraints) Performing minimization step: 4196. Total energy = 3158.4524 kcal/mol (3154.1463 without restraints) Performing minimization step: 4197. Total energy = 3158.3809 kcal/mol (3154.0758 without restraints) Performing minimization step: 4198. Total energy = 3158.3090 kcal/mol (3154.0047 without restraints) Performing minimization step: 4199. Total energy = 3158.2370 kcal/mol (3153.9338 without restraints) Performing minimization step: 4200. Total energy = 3158.1654 kcal/mol (3153.8631 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 3158.0936 kcal/mol (3153.7922 without restraints) Performing minimization step: 4202. Total energy = 3158.0219 kcal/mol (3153.7214 without restraints) Performing minimization step: 4203. Total energy = 3157.9504 kcal/mol (3153.6509 without restraints) Performing minimization step: 4204. Total energy = 3157.8788 kcal/mol (3153.5802 without restraints) Performing minimization step: 4205. Total energy = 3157.8078 kcal/mol (3153.5102 without restraints) Performing minimization step: 4206. Total energy = 3157.7362 kcal/mol (3153.4395 without restraints) Performing minimization step: 4207. Total energy = 3157.6646 kcal/mol (3153.3688 without restraints) Performing minimization step: 4208. Total energy = 3157.5931 kcal/mol (3153.2984 without restraints) Performing minimization step: 4209. Total energy = 3157.5217 kcal/mol (3153.2279 without restraints) Performing minimization step: 4210. Total energy = 3157.4500 kcal/mol (3153.1571 without restraints) Performing minimization step: 4211. Total energy = 3157.3786 kcal/mol (3153.0866 without restraints) Performing minimization step: 4212. Total energy = 3157.3072 kcal/mol (3153.0162 without restraints) Performing minimization step: 4213. Total energy = 3157.2353 kcal/mol (3152.9453 without restraints) Performing minimization step: 4214. Total energy = 3157.1636 kcal/mol (3152.8744 without restraints) Performing minimization step: 4215. Total energy = 3157.0920 kcal/mol (3152.8038 without restraints) Performing minimization step: 4216. Total energy = 3157.0203 kcal/mol (3152.7330 without restraints) Performing minimization step: 4217. Total energy = 3156.9487 kcal/mol (3152.6623 without restraints) Performing minimization step: 4218. Total energy = 3156.8770 kcal/mol (3152.5916 without restraints) Performing minimization step: 4219. Total energy = 3156.8054 kcal/mol (3152.5210 without restraints) Performing minimization step: 4220. Total energy = 3156.7340 kcal/mol (3152.4504 without restraints) Performing minimization step: 4221. Total energy = 3156.6623 kcal/mol (3152.3797 without restraints) Performing minimization step: 4222. Total energy = 3156.5907 kcal/mol (3152.3090 without restraints) Performing minimization step: 4223. Total energy = 3156.5191 kcal/mol (3152.2384 without restraints) Performing minimization step: 4224. Total energy = 3156.4476 kcal/mol (3152.1677 without restraints) Performing minimization step: 4225. Total energy = 3156.3762 kcal/mol (3152.0973 without restraints) Performing minimization step: 4226. Total energy = 3156.3044 kcal/mol (3152.0264 without restraints) Performing minimization step: 4227. Total energy = 3156.2326 kcal/mol (3151.9556 without restraints) Performing minimization step: 4228. Total energy = 3156.1612 kcal/mol (3151.8851 without restraints) Performing minimization step: 4229. Total energy = 3156.0899 kcal/mol (3151.8147 without restraints) Performing minimization step: 4230. Total energy = 3156.0180 kcal/mol (3151.7437 without restraints) Performing minimization step: 4231. Total energy = 3155.9464 kcal/mol (3151.6731 without restraints) Performing minimization step: 4232. Total energy = 3155.8750 kcal/mol (3151.6027 without restraints) Performing minimization step: 4233. Total energy = 3155.8035 kcal/mol (3151.5321 without restraints) Performing minimization step: 4234. Total energy = 3155.7318 kcal/mol (3151.4614 without restraints) Performing minimization step: 4235. Total energy = 3155.6603 kcal/mol (3151.3907 without restraints) Performing minimization step: 4236. Total energy = 3155.5886 kcal/mol (3151.3200 without restraints) Performing minimization step: 4237. Total energy = 3155.5168 kcal/mol (3151.2491 without restraints) Performing minimization step: 4238. Total energy = 3155.4452 kcal/mol (3151.1784 without restraints) Performing minimization step: 4239. Total energy = 3155.3733 kcal/mol (3151.1075 without restraints) Performing minimization step: 4240. Total energy = 3155.3015 kcal/mol (3151.0366 without restraints) Performing minimization step: 4241. Total energy = 3155.2295 kcal/mol (3150.9655 without restraints) Performing minimization step: 4242. Total energy = 3155.1579 kcal/mol (3150.8948 without restraints) Performing minimization step: 4243. Total energy = 3155.0863 kcal/mol (3150.8243 without restraints) Performing minimization step: 4244. Total energy = 3155.0148 kcal/mol (3150.7536 without restraints) Performing minimization step: 4245. Total energy = 3154.9434 kcal/mol (3150.6831 without restraints) Performing minimization step: 4246. Total energy = 3154.8718 kcal/mol (3150.6124 without restraints) Performing minimization step: 4247. Total energy = 3154.7999 kcal/mol (3150.5414 without restraints) Performing minimization step: 4248. Total energy = 3154.7278 kcal/mol (3150.4702 without restraints) Performing minimization step: 4249. Total energy = 3154.6561 kcal/mol (3150.3995 without restraints) Performing minimization step: 4250. Total energy = 3154.5842 kcal/mol (3150.3286 without restraints) Performing minimization step: 4251. Total energy = 3154.5127 kcal/mol (3150.2580 without restraints) Performing minimization step: 4252. Total energy = 3154.4411 kcal/mol (3150.1873 without restraints) Performing minimization step: 4253. Total energy = 3154.3690 kcal/mol (3150.1161 without restraints) Performing minimization step: 4254. Total energy = 3154.2973 kcal/mol (3150.0453 without restraints) Performing minimization step: 4255. Total energy = 3154.2257 kcal/mol (3149.9746 without restraints) Performing minimization step: 4256. Total energy = 3154.1547 kcal/mol (3149.9047 without restraints) Performing minimization step: 4257. Total energy = 3154.0832 kcal/mol (3149.8340 without restraints) Performing minimization step: 4258. Total energy = 3154.0115 kcal/mol (3149.7632 without restraints) Performing minimization step: 4259. Total energy = 3153.9400 kcal/mol (3149.6925 without restraints) Performing minimization step: 4260. Total energy = 3153.8683 kcal/mol (3149.6219 without restraints) Performing minimization step: 4261. Total energy = 3153.7968 kcal/mol (3149.5512 without restraints) Performing minimization step: 4262. Total energy = 3153.7250 kcal/mol (3149.4803 without restraints) Performing minimization step: 4263. Total energy = 3153.6530 kcal/mol (3149.4091 without restraints) Performing minimization step: 4264. Total energy = 3153.5808 kcal/mol (3149.3380 without restraints) Performing minimization step: 4265. Total energy = 3153.5091 kcal/mol (3149.2671 without restraints) Performing minimization step: 4266. Total energy = 3153.4376 kcal/mol (3149.1965 without restraints) Performing minimization step: 4267. Total energy = 3153.3658 kcal/mol (3149.1257 without restraints) Performing minimization step: 4268. Total energy = 3153.2937 kcal/mol (3149.0546 without restraints) Performing minimization step: 4269. Total energy = 3153.2220 kcal/mol (3148.9836 without restraints) Performing minimization step: 4270. Total energy = 3153.1502 kcal/mol (3148.9128 without restraints) Performing minimization step: 4271. Total energy = 3153.0785 kcal/mol (3148.8421 without restraints) Performing minimization step: 4272. Total energy = 3153.0061 kcal/mol (3148.7706 without restraints) Performing minimization step: 4273. Total energy = 3152.9345 kcal/mol (3148.6999 without restraints) Performing minimization step: 4274. Total energy = 3152.8628 kcal/mol (3148.6292 without restraints) Performing minimization step: 4275. Total energy = 3152.7913 kcal/mol (3148.5584 without restraints) Performing minimization step: 4276. Total energy = 3152.7196 kcal/mol (3148.4877 without restraints) Performing minimization step: 4277. Total energy = 3152.6477 kcal/mol (3148.4166 without restraints) Performing minimization step: 4278. Total energy = 3152.5753 kcal/mol (3148.3449 without restraints) Performing minimization step: 4279. Total energy = 3152.5035 kcal/mol (3148.2742 without restraints) Performing minimization step: 4280. Total energy = 3152.4319 kcal/mol (3148.2036 without restraints) Performing minimization step: 4281. Total energy = 3152.3610 kcal/mol (3148.1335 without restraints) Performing minimization step: 4282. Total energy = 3152.2893 kcal/mol (3148.0627 without restraints) Performing minimization step: 4283. Total energy = 3152.2173 kcal/mol (3147.9917 without restraints) Performing minimization step: 4284. Total energy = 3152.1454 kcal/mol (3147.9207 without restraints) Performing minimization step: 4285. Total energy = 3152.0736 kcal/mol (3147.8498 without restraints) Performing minimization step: 4286. Total energy = 3152.0016 kcal/mol (3147.7787 without restraints) Performing minimization step: 4287. Total energy = 3151.9301 kcal/mol (3147.7080 without restraints) Performing minimization step: 4288. Total energy = 3151.8580 kcal/mol (3147.6369 without restraints) Performing minimization step: 4289. Total energy = 3151.7863 kcal/mol (3147.5662 without restraints) Performing minimization step: 4290. Total energy = 3151.7150 kcal/mol (3147.4957 without restraints) Performing minimization step: 4291. Total energy = 3151.6428 kcal/mol (3147.4243 without restraints) Performing minimization step: 4292. Total energy = 3151.5707 kcal/mol (3147.3531 without restraints) Performing minimization step: 4293. Total energy = 3151.4986 kcal/mol (3147.2820 without restraints) Performing minimization step: 4294. Total energy = 3151.4266 kcal/mol (3147.2108 without restraints) Performing minimization step: 4295. Total energy = 3151.3547 kcal/mol (3147.1398 without restraints) Performing minimization step: 4296. Total energy = 3151.2826 kcal/mol (3147.0686 without restraints) Performing minimization step: 4297. Total energy = 3151.2105 kcal/mol (3146.9975 without restraints) Performing minimization step: 4298. Total energy = 3151.1387 kcal/mol (3146.9265 without restraints) Performing minimization step: 4299. Total energy = 3151.0666 kcal/mol (3146.8554 without restraints) Performing minimization step: 4300. Total energy = 3150.9946 kcal/mol (3146.7842 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 3150.9223 kcal/mol (3146.7128 without restraints) Performing minimization step: 4302. Total energy = 3150.8501 kcal/mol (3146.6415 without restraints) Performing minimization step: 4303. Total energy = 3150.7779 kcal/mol (3146.5702 without restraints) Performing minimization step: 4304. Total energy = 3150.7057 kcal/mol (3146.4989 without restraints) Performing minimization step: 4305. Total energy = 3150.6337 kcal/mol (3146.4277 without restraints) Performing minimization step: 4306. Total energy = 3150.5611 kcal/mol (3146.3561 without restraints) Performing minimization step: 4307. Total energy = 3150.4883 kcal/mol (3146.2841 without restraints) Performing minimization step: 4308. Total energy = 3150.4164 kcal/mol (3146.2131 without restraints) Performing minimization step: 4309. Total energy = 3150.3443 kcal/mol (3146.1418 without restraints) Performing minimization step: 4310. Total energy = 3150.2717 kcal/mol (3146.0702 without restraints) Performing minimization step: 4311. Total energy = 3150.1996 kcal/mol (3145.9989 without restraints) Performing minimization step: 4312. Total energy = 3150.1271 kcal/mol (3145.9274 without restraints) Performing minimization step: 4313. Total energy = 3150.0549 kcal/mol (3145.8561 without restraints) Performing minimization step: 4314. Total energy = 3149.9821 kcal/mol (3145.7841 without restraints) Performing minimization step: 4315. Total energy = 3149.9101 kcal/mol (3145.7130 without restraints) Performing minimization step: 4316. Total energy = 3149.8379 kcal/mol (3145.6417 without restraints) Performing minimization step: 4317. Total energy = 3149.7655 kcal/mol (3145.5701 without restraints) Performing minimization step: 4318. Total energy = 3149.6928 kcal/mol (3145.4983 without restraints) Performing minimization step: 4319. Total energy = 3149.6200 kcal/mol (3145.4264 without restraints) Performing minimization step: 4320. Total energy = 3149.5473 kcal/mol (3145.3546 without restraints) Performing minimization step: 4321. Total energy = 3149.4749 kcal/mol (3145.2831 without restraints) Performing minimization step: 4322. Total energy = 3149.4023 kcal/mol (3145.2114 without restraints) Performing minimization step: 4323. Total energy = 3149.3296 kcal/mol (3145.1395 without restraints) Performing minimization step: 4324. Total energy = 3149.2572 kcal/mol (3145.0680 without restraints) Performing minimization step: 4325. Total energy = 3149.1845 kcal/mol (3144.9962 without restraints) Performing minimization step: 4326. Total energy = 3149.1121 kcal/mol (3144.9246 without restraints) Performing minimization step: 4327. Total energy = 3149.0395 kcal/mol (3144.8529 without restraints) Performing minimization step: 4328. Total energy = 3148.9670 kcal/mol (3144.7813 without restraints) Performing minimization step: 4329. Total energy = 3148.8944 kcal/mol (3144.7096 without restraints) Performing minimization step: 4330. Total energy = 3148.8216 kcal/mol (3144.6377 without restraints) Performing minimization step: 4331. Total energy = 3148.7487 kcal/mol (3144.5657 without restraints) Performing minimization step: 4332. Total energy = 3148.6760 kcal/mol (3144.4938 without restraints) Performing minimization step: 4333. Total energy = 3148.6034 kcal/mol (3144.4221 without restraints) Performing minimization step: 4334. Total energy = 3148.5302 kcal/mol (3144.3496 without restraints) Performing minimization step: 4335. Total energy = 3148.4572 kcal/mol (3144.2776 without restraints) Performing minimization step: 4336. Total energy = 3148.3843 kcal/mol (3144.2056 without restraints) Performing minimization step: 4337. Total energy = 3148.3118 kcal/mol (3144.1339 without restraints) Performing minimization step: 4338. Total energy = 3148.2390 kcal/mol (3144.0621 without restraints) Performing minimization step: 4339. Total energy = 3148.1661 kcal/mol (3143.9899 without restraints) Performing minimization step: 4340. Total energy = 3148.0931 kcal/mol (3143.9178 without restraints) Performing minimization step: 4341. Total energy = 3148.0199 kcal/mol (3143.8455 without restraints) Performing minimization step: 4342. Total energy = 3147.9470 kcal/mol (3143.7734 without restraints) Performing minimization step: 4343. Total energy = 3147.8740 kcal/mol (3143.7013 without restraints) Performing minimization step: 4344. Total energy = 3147.8012 kcal/mol (3143.6294 without restraints) Performing minimization step: 4345. Total energy = 3147.7285 kcal/mol (3143.5576 without restraints) Performing minimization step: 4346. Total energy = 3147.6550 kcal/mol (3143.4849 without restraints) Performing minimization step: 4347. Total energy = 3147.5820 kcal/mol (3143.4127 without restraints) Performing minimization step: 4348. Total energy = 3147.5088 kcal/mol (3143.3403 without restraints) Performing minimization step: 4349. Total energy = 3147.4356 kcal/mol (3143.2681 without restraints) Performing minimization step: 4350. Total energy = 3147.3632 kcal/mol (3143.1966 without restraints) Performing minimization step: 4351. Total energy = 3147.2901 kcal/mol (3143.1244 without restraints) Performing minimization step: 4352. Total energy = 3147.2170 kcal/mol (3143.0520 without restraints) Performing minimization step: 4353. Total energy = 3147.1439 kcal/mol (3142.9799 without restraints) Performing minimization step: 4354. Total energy = 3147.0707 kcal/mol (3142.9075 without restraints) Performing minimization step: 4355. Total energy = 3146.9976 kcal/mol (3142.8353 without restraints) Performing minimization step: 4356. Total energy = 3146.9243 kcal/mol (3142.7628 without restraints) Performing minimization step: 4357. Total energy = 3146.8514 kcal/mol (3142.6908 without restraints) Performing minimization step: 4358. Total energy = 3146.7781 kcal/mol (3142.6183 without restraints) Performing minimization step: 4359. Total energy = 3146.7048 kcal/mol (3142.5459 without restraints) Performing minimization step: 4360. Total energy = 3146.6316 kcal/mol (3142.4736 without restraints) Performing minimization step: 4361. Total energy = 3146.5581 kcal/mol (3142.4009 without restraints) Performing minimization step: 4362. Total energy = 3146.4846 kcal/mol (3142.3283 without restraints) Performing minimization step: 4363. Total energy = 3146.4115 kcal/mol (3142.2560 without restraints) Performing minimization step: 4364. Total energy = 3146.3381 kcal/mol (3142.1834 without restraints) Performing minimization step: 4365. Total energy = 3146.2648 kcal/mol (3142.1110 without restraints) Performing minimization step: 4366. Total energy = 3146.1913 kcal/mol (3142.0384 without restraints) Performing minimization step: 4367. Total energy = 3146.1182 kcal/mol (3141.9661 without restraints) Performing minimization step: 4368. Total energy = 3146.0451 kcal/mol (3141.8940 without restraints) Performing minimization step: 4369. Total energy = 3145.9714 kcal/mol (3141.8209 without restraints) Performing minimization step: 4370. Total energy = 3145.8978 kcal/mol (3141.7483 without restraints) Performing minimization step: 4371. Total energy = 3145.8242 kcal/mol (3141.6755 without restraints) Performing minimization step: 4372. Total energy = 3145.7513 kcal/mol (3141.6034 without restraints) Performing minimization step: 4373. Total energy = 3145.6772 kcal/mol (3141.5302 without restraints) Performing minimization step: 4374. Total energy = 3145.6042 kcal/mol (3141.4580 without restraints) Performing minimization step: 4375. Total energy = 3145.5306 kcal/mol (3141.3852 without restraints) Performing minimization step: 4376. Total energy = 3145.4569 kcal/mol (3141.3124 without restraints) Performing minimization step: 4377. Total energy = 3145.3834 kcal/mol (3141.2397 without restraints) Performing minimization step: 4378. Total energy = 3145.3099 kcal/mol (3141.1671 without restraints) Performing minimization step: 4379. Total energy = 3145.2362 kcal/mol (3141.0944 without restraints) Performing minimization step: 4380. Total energy = 3145.1629 kcal/mol (3141.0218 without restraints) Performing minimization step: 4381. Total energy = 3145.0893 kcal/mol (3140.9490 without restraints) Performing minimization step: 4382. Total energy = 3145.0155 kcal/mol (3140.8761 without restraints) Performing minimization step: 4383. Total energy = 3144.9413 kcal/mol (3140.8027 without restraints) Performing minimization step: 4384. Total energy = 3144.8674 kcal/mol (3140.7297 without restraints) Performing minimization step: 4385. Total energy = 3144.7936 kcal/mol (3140.6567 without restraints) Performing minimization step: 4386. Total energy = 3144.7196 kcal/mol (3140.5835 without restraints) Performing minimization step: 4387. Total energy = 3144.6457 kcal/mol (3140.5105 without restraints) Performing minimization step: 4388. Total energy = 3144.5711 kcal/mol (3140.4367 without restraints) Performing minimization step: 4389. Total energy = 3144.4970 kcal/mol (3140.3634 without restraints) Performing minimization step: 4390. Total energy = 3144.4233 kcal/mol (3140.2906 without restraints) Performing minimization step: 4391. Total energy = 3144.3494 kcal/mol (3140.2175 without restraints) Performing minimization step: 4392. Total energy = 3144.2756 kcal/mol (3140.1445 without restraints) Performing minimization step: 4393. Total energy = 3144.2015 kcal/mol (3140.0713 without restraints) Performing minimization step: 4394. Total energy = 3144.1286 kcal/mol (3139.9993 without restraints) Performing minimization step: 4395. Total energy = 3144.0547 kcal/mol (3139.9261 without restraints) Performing minimization step: 4396. Total energy = 3143.9806 kcal/mol (3139.8529 without restraints) Performing minimization step: 4397. Total energy = 3143.9065 kcal/mol (3139.7796 without restraints) Performing minimization step: 4398. Total energy = 3143.8323 kcal/mol (3139.7062 without restraints) Performing minimization step: 4399. Total energy = 3143.7582 kcal/mol (3139.6331 without restraints) Performing minimization step: 4400. Total energy = 3143.6840 kcal/mol (3139.5596 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 3143.6094 kcal/mol (3139.4859 without restraints) Performing minimization step: 4402. Total energy = 3143.5353 kcal/mol (3139.4126 without restraints) Performing minimization step: 4403. Total energy = 3143.4612 kcal/mol (3139.3393 without restraints) Performing minimization step: 4404. Total energy = 3143.3871 kcal/mol (3139.2661 without restraints) Performing minimization step: 4405. Total energy = 3143.3126 kcal/mol (3139.1924 without restraints) Performing minimization step: 4406. Total energy = 3143.2388 kcal/mol (3139.1194 without restraints) Performing minimization step: 4407. Total energy = 3143.1648 kcal/mol (3139.0463 without restraints) Performing minimization step: 4408. Total energy = 3143.0908 kcal/mol (3138.9730 without restraints) Performing minimization step: 4409. Total energy = 3143.0167 kcal/mol (3138.8998 without restraints) Performing minimization step: 4410. Total energy = 3142.9428 kcal/mol (3138.8268 without restraints) Performing minimization step: 4411. Total energy = 3142.8684 kcal/mol (3138.7532 without restraints) Performing minimization step: 4412. Total energy = 3142.7943 kcal/mol (3138.6799 without restraints) Performing minimization step: 4413. Total energy = 3142.7200 kcal/mol (3138.6064 without restraints) Performing minimization step: 4414. Total energy = 3142.6455 kcal/mol (3138.5327 without restraints) Performing minimization step: 4415. Total energy = 3142.5714 kcal/mol (3138.4595 without restraints) Performing minimization step: 4416. Total energy = 3142.4969 kcal/mol (3138.3858 without restraints) Performing minimization step: 4417. Total energy = 3142.4223 kcal/mol (3138.3120 without restraints) Performing minimization step: 4418. Total energy = 3142.3478 kcal/mol (3138.2383 without restraints) Performing minimization step: 4419. Total energy = 3142.2734 kcal/mol (3138.1647 without restraints) Performing minimization step: 4420. Total energy = 3142.1990 kcal/mol (3138.0911 without restraints) Performing minimization step: 4421. Total energy = 3142.1247 kcal/mol (3138.0177 without restraints) Performing minimization step: 4422. Total energy = 3142.0505 kcal/mol (3137.9444 without restraints) Performing minimization step: 4423. Total energy = 3141.9760 kcal/mol (3137.8707 without restraints) Performing minimization step: 4424. Total energy = 3141.9017 kcal/mol (3137.7971 without restraints) Performing minimization step: 4425. Total energy = 3141.8274 kcal/mol (3137.7236 without restraints) Performing minimization step: 4426. Total energy = 3141.7529 kcal/mol (3137.6499 without restraints) Performing minimization step: 4427. Total energy = 3141.6785 kcal/mol (3137.5765 without restraints) Performing minimization step: 4428. Total energy = 3141.6038 kcal/mol (3137.5024 without restraints) Performing minimization step: 4429. Total energy = 3141.5293 kcal/mol (3137.4290 without restraints) Performing minimization step: 4430. Total energy = 3141.4547 kcal/mol (3137.3550 without restraints) Performing minimization step: 4431. Total energy = 3141.3801 kcal/mol (3137.2813 without restraints) Performing minimization step: 4432. Total energy = 3141.3058 kcal/mol (3137.2078 without restraints) Performing minimization step: 4433. Total energy = 3141.2314 kcal/mol (3137.1341 without restraints) Performing minimization step: 4434. Total energy = 3141.1569 kcal/mol (3137.0605 without restraints) Performing minimization step: 4435. Total energy = 3141.0827 kcal/mol (3136.9872 without restraints) Performing minimization step: 4436. Total energy = 3141.0084 kcal/mol (3136.9137 without restraints) Performing minimization step: 4437. Total energy = 3140.9338 kcal/mol (3136.8398 without restraints) Performing minimization step: 4438. Total energy = 3140.8597 kcal/mol (3136.7667 without restraints) Performing minimization step: 4439. Total energy = 3140.7853 kcal/mol (3136.6930 without restraints) Performing minimization step: 4440. Total energy = 3140.7108 kcal/mol (3136.6193 without restraints) Performing minimization step: 4441. Total energy = 3140.6363 kcal/mol (3136.5456 without restraints) Performing minimization step: 4442. Total energy = 3140.5618 kcal/mol (3136.4719 without restraints) Performing minimization step: 4443. Total energy = 3140.4870 kcal/mol (3136.3979 without restraints) Performing minimization step: 4444. Total energy = 3140.4127 kcal/mol (3136.3244 without restraints) Performing minimization step: 4445. Total energy = 3140.3383 kcal/mol (3136.2508 without restraints) Performing minimization step: 4446. Total energy = 3140.2637 kcal/mol (3136.1770 without restraints) Performing minimization step: 4447. Total energy = 3140.1891 kcal/mol (3136.1033 without restraints) Performing minimization step: 4448. Total energy = 3140.1146 kcal/mol (3136.0297 without restraints) Performing minimization step: 4449. Total energy = 3140.0403 kcal/mol (3135.9561 without restraints) Performing minimization step: 4450. Total energy = 3139.9655 kcal/mol (3135.8821 without restraints) Performing minimization step: 4451. Total energy = 3139.8906 kcal/mol (3135.8080 without restraints) Performing minimization step: 4452. Total energy = 3139.8162 kcal/mol (3135.7345 without restraints) Performing minimization step: 4453. Total energy = 3139.7417 kcal/mol (3135.6608 without restraints) Performing minimization step: 4454. Total energy = 3139.6672 kcal/mol (3135.5870 without restraints) Performing minimization step: 4455. Total energy = 3139.5927 kcal/mol (3135.5134 without restraints) Performing minimization step: 4456. Total energy = 3139.5183 kcal/mol (3135.4398 without restraints) Performing minimization step: 4457. Total energy = 3139.4443 kcal/mol (3135.3668 without restraints) Performing minimization step: 4458. Total energy = 3139.3702 kcal/mol (3135.2933 without restraints) Performing minimization step: 4459. Total energy = 3139.2957 kcal/mol (3135.2196 without restraints) Performing minimization step: 4460. Total energy = 3139.2211 kcal/mol (3135.1458 without restraints) Performing minimization step: 4461. Total energy = 3139.1466 kcal/mol (3135.0722 without restraints) Performing minimization step: 4462. Total energy = 3139.0722 kcal/mol (3134.9985 without restraints) Performing minimization step: 4463. Total energy = 3138.9980 kcal/mol (3134.9251 without restraints) Performing minimization step: 4464. Total energy = 3138.9232 kcal/mol (3134.8511 without restraints) Performing minimization step: 4465. Total energy = 3138.8487 kcal/mol (3134.7775 without restraints) Performing minimization step: 4466. Total energy = 3138.7744 kcal/mol (3134.7040 without restraints) Performing minimization step: 4467. Total energy = 3138.7000 kcal/mol (3134.6303 without restraints) Performing minimization step: 4468. Total energy = 3138.6258 kcal/mol (3134.5570 without restraints) Performing minimization step: 4469. Total energy = 3138.5513 kcal/mol (3134.4833 without restraints) Performing minimization step: 4470. Total energy = 3138.4771 kcal/mol (3134.4099 without restraints) Performing minimization step: 4471. Total energy = 3138.4027 kcal/mol (3134.3363 without restraints) Performing minimization step: 4472. Total energy = 3138.3286 kcal/mol (3134.2630 without restraints) Performing minimization step: 4473. Total energy = 3138.2544 kcal/mol (3134.1896 without restraints) Performing minimization step: 4474. Total energy = 3138.1799 kcal/mol (3134.1160 without restraints) Performing minimization step: 4475. Total energy = 3138.1057 kcal/mol (3134.0425 without restraints) Performing minimization step: 4476. Total energy = 3138.0313 kcal/mol (3133.9690 without restraints) Performing minimization step: 4477. Total energy = 3137.9568 kcal/mol (3133.8952 without restraints) Performing minimization step: 4478. Total energy = 3137.8826 kcal/mol (3133.8219 without restraints) Performing minimization step: 4479. Total energy = 3137.8084 kcal/mol (3133.7484 without restraints) Performing minimization step: 4480. Total energy = 3137.7341 kcal/mol (3133.6750 without restraints) Performing minimization step: 4481. Total energy = 3137.6599 kcal/mol (3133.6015 without restraints) Performing minimization step: 4482. Total energy = 3137.5856 kcal/mol (3133.5281 without restraints) Performing minimization step: 4483. Total energy = 3137.5115 kcal/mol (3133.4549 without restraints) Performing minimization step: 4484. Total energy = 3137.4376 kcal/mol (3133.3817 without restraints) Performing minimization step: 4485. Total energy = 3137.3634 kcal/mol (3133.3083 without restraints) Performing minimization step: 4486. Total energy = 3137.2899 kcal/mol (3133.2358 without restraints) Performing minimization step: 4487. Total energy = 3137.2160 kcal/mol (3133.1625 without restraints) Performing minimization step: 4488. Total energy = 3137.1419 kcal/mol (3133.0892 without restraints) Performing minimization step: 4489. Total energy = 3137.0679 kcal/mol (3133.0161 without restraints) Performing minimization step: 4490. Total energy = 3136.9940 kcal/mol (3132.9429 without restraints) Performing minimization step: 4491. Total energy = 3136.9192 kcal/mol (3132.8688 without restraints) Performing minimization step: 4492. Total energy = 3136.8451 kcal/mol (3132.7956 without restraints) Performing minimization step: 4493. Total energy = 3136.7713 kcal/mol (3132.7226 without restraints) Performing minimization step: 4494. Total energy = 3136.6977 kcal/mol (3132.6498 without restraints) Performing minimization step: 4495. Total energy = 3136.6241 kcal/mol (3132.5770 without restraints) Performing minimization step: 4496. Total energy = 3136.5503 kcal/mol (3132.5041 without restraints) Performing minimization step: 4497. Total energy = 3136.4768 kcal/mol (3132.4313 without restraints) Performing minimization step: 4498. Total energy = 3136.4031 kcal/mol (3132.3585 without restraints) Performing minimization step: 4499. Total energy = 3136.3293 kcal/mol (3132.2854 without restraints) Performing minimization step: 4500. Total energy = 3136.2555 kcal/mol (3132.2124 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 3136.1816 kcal/mol (3132.1392 without restraints) Performing minimization step: 4502. Total energy = 3136.1079 kcal/mol (3132.0664 without restraints) Performing minimization step: 4503. Total energy = 3136.0341 kcal/mol (3131.9935 without restraints) Performing minimization step: 4504. Total energy = 3135.9607 kcal/mol (3131.9208 without restraints) Performing minimization step: 4505. Total energy = 3135.8873 kcal/mol (3131.8482 without restraints) Performing minimization step: 4506. Total energy = 3135.8144 kcal/mol (3131.7762 without restraints) Performing minimization step: 4507. Total energy = 3135.7408 kcal/mol (3131.7034 without restraints) Performing minimization step: 4508. Total energy = 3135.6670 kcal/mol (3131.6303 without restraints) Performing minimization step: 4509. Total energy = 3135.5933 kcal/mol (3131.5573 without restraints) Performing minimization step: 4510. Total energy = 3135.5194 kcal/mol (3131.4843 without restraints) Performing minimization step: 4511. Total energy = 3135.4457 kcal/mol (3131.4115 without restraints) Performing minimization step: 4512. Total energy = 3135.3720 kcal/mol (3131.3387 without restraints) Performing minimization step: 4513. Total energy = 3135.2990 kcal/mol (3131.2665 without restraints) Performing minimization step: 4514. Total energy = 3135.2259 kcal/mol (3131.1943 without restraints) Performing minimization step: 4515. Total energy = 3135.1528 kcal/mol (3131.1218 without restraints) Performing minimization step: 4516. Total energy = 3135.0793 kcal/mol (3131.0491 without restraints) Performing minimization step: 4517. Total energy = 3135.0058 kcal/mol (3130.9764 without restraints) Performing minimization step: 4518. Total energy = 3134.9328 kcal/mol (3130.9043 without restraints) Performing minimization step: 4519. Total energy = 3134.8598 kcal/mol (3130.8321 without restraints) Performing minimization step: 4520. Total energy = 3134.7872 kcal/mol (3130.7606 without restraints) Performing minimization step: 4521. Total energy = 3134.7144 kcal/mol (3130.6882 without restraints) Performing minimization step: 4522. Total energy = 3134.6414 kcal/mol (3130.6160 without restraints) Performing minimization step: 4523. Total energy = 3134.5681 kcal/mol (3130.5436 without restraints) Performing minimization step: 4524. Total energy = 3134.4950 kcal/mol (3130.4712 without restraints) Performing minimization step: 4525. Total energy = 3134.4219 kcal/mol (3130.3990 without restraints) Performing minimization step: 4526. Total energy = 3134.3490 kcal/mol (3130.3269 without restraints) Performing minimization step: 4527. Total energy = 3134.2761 kcal/mol (3130.2548 without restraints) Performing minimization step: 4528. Total energy = 3134.2031 kcal/mol (3130.1824 without restraints) Performing minimization step: 4529. Total energy = 3134.1299 kcal/mol (3130.1101 without restraints) Performing minimization step: 4530. Total energy = 3134.0571 kcal/mol (3130.0382 without restraints) Performing minimization step: 4531. Total energy = 3133.9845 kcal/mol (3129.9665 without restraints) Performing minimization step: 4532. Total energy = 3133.9121 kcal/mol (3129.8947 without restraints) Performing minimization step: 4533. Total energy = 3133.8398 kcal/mol (3129.8234 without restraints) Performing minimization step: 4534. Total energy = 3133.7671 kcal/mol (3129.7514 without restraints) Performing minimization step: 4535. Total energy = 3133.6946 kcal/mol (3129.6796 without restraints) Performing minimization step: 4536. Total energy = 3133.6222 kcal/mol (3129.6081 without restraints) Performing minimization step: 4537. Total energy = 3133.5497 kcal/mol (3129.5365 without restraints) Performing minimization step: 4538. Total energy = 3133.4773 kcal/mol (3129.4648 without restraints) Performing minimization step: 4539. Total energy = 3133.4051 kcal/mol (3129.3936 without restraints) Performing minimization step: 4540. Total energy = 3133.3333 kcal/mol (3129.3225 without restraints) Performing minimization step: 4541. Total energy = 3133.2611 kcal/mol (3129.2513 without restraints) Performing minimization step: 4542. Total energy = 3133.1891 kcal/mol (3129.1800 without restraints) Performing minimization step: 4543. Total energy = 3133.1170 kcal/mol (3129.1086 without restraints) Performing minimization step: 4544. Total energy = 3133.0448 kcal/mol (3129.0373 without restraints) Performing minimization step: 4545. Total energy = 3132.9730 kcal/mol (3128.9662 without restraints) Performing minimization step: 4546. Total energy = 3132.9008 kcal/mol (3128.8947 without restraints) Performing minimization step: 4547. Total energy = 3132.8285 kcal/mol (3128.8233 without restraints) Performing minimization step: 4548. Total energy = 3132.7567 kcal/mol (3128.7523 without restraints) Performing minimization step: 4549. Total energy = 3132.6848 kcal/mol (3128.6813 without restraints) Performing minimization step: 4550. Total energy = 3132.6124 kcal/mol (3128.6097 without restraints) Performing minimization step: 4551. Total energy = 3132.5406 kcal/mol (3128.5387 without restraints) Performing minimization step: 4552. Total energy = 3132.4691 kcal/mol (3128.4680 without restraints) Performing minimization step: 4553. Total energy = 3132.3972 kcal/mol (3128.3969 without restraints) Performing minimization step: 4554. Total energy = 3132.3256 kcal/mol (3128.3261 without restraints) Performing minimization step: 4555. Total energy = 3132.2539 kcal/mol (3128.2551 without restraints) Performing minimization step: 4556. Total energy = 3132.1823 kcal/mol (3128.1845 without restraints) Performing minimization step: 4557. Total energy = 3132.1109 kcal/mol (3128.1138 without restraints) Performing minimization step: 4558. Total energy = 3132.0394 kcal/mol (3128.0432 without restraints) Performing minimization step: 4559. Total energy = 3131.9683 kcal/mol (3127.9729 without restraints) Performing minimization step: 4560. Total energy = 3131.8970 kcal/mol (3127.9025 without restraints) Performing minimization step: 4561. Total energy = 3131.8261 kcal/mol (3127.8323 without restraints) Performing minimization step: 4562. Total energy = 3131.7549 kcal/mol (3127.7619 without restraints) Performing minimization step: 4563. Total energy = 3131.6834 kcal/mol (3127.6912 without restraints) Performing minimization step: 4564. Total energy = 3131.6122 kcal/mol (3127.6208 without restraints) Performing minimization step: 4565. Total energy = 3131.5411 kcal/mol (3127.5506 without restraints) Performing minimization step: 4566. Total energy = 3131.4702 kcal/mol (3127.4806 without restraints) Performing minimization step: 4567. Total energy = 3131.3993 kcal/mol (3127.4104 without restraints) Performing minimization step: 4568. Total energy = 3131.3286 kcal/mol (3127.3406 without restraints) Performing minimization step: 4569. Total energy = 3131.2578 kcal/mol (3127.2705 without restraints) Performing minimization step: 4570. Total energy = 3131.1869 kcal/mol (3127.2003 without restraints) Performing minimization step: 4571. Total energy = 3131.1162 kcal/mol (3127.1305 without restraints) Performing minimization step: 4572. Total energy = 3131.0453 kcal/mol (3127.0604 without restraints) Performing minimization step: 4573. Total energy = 3130.9748 kcal/mol (3126.9908 without restraints) Performing minimization step: 4574. Total energy = 3130.9042 kcal/mol (3126.9210 without restraints) Performing minimization step: 4575. Total energy = 3130.8337 kcal/mol (3126.8513 without restraints) Performing minimization step: 4576. Total energy = 3130.7632 kcal/mol (3126.7817 without restraints) Performing minimization step: 4577. Total energy = 3130.6924 kcal/mol (3126.7117 without restraints) Performing minimization step: 4578. Total energy = 3130.6221 kcal/mol (3126.6422 without restraints) Performing minimization step: 4579. Total energy = 3130.5516 kcal/mol (3126.5725 without restraints) Performing minimization step: 4580. Total energy = 3130.4816 kcal/mol (3126.5033 without restraints) Performing minimization step: 4581. Total energy = 3130.4115 kcal/mol (3126.4340 without restraints) Performing minimization step: 4582. Total energy = 3130.3410 kcal/mol (3126.3643 without restraints) Performing minimization step: 4583. Total energy = 3130.2709 kcal/mol (3126.2950 without restraints) Performing minimization step: 4584. Total energy = 3130.2007 kcal/mol (3126.2256 without restraints) Performing minimization step: 4585. Total energy = 3130.1319 kcal/mol (3126.1577 without restraints) Performing minimization step: 4586. Total energy = 3130.0620 kcal/mol (3126.0886 without restraints) Performing minimization step: 4587. Total energy = 3129.9922 kcal/mol (3126.0197 without restraints) Performing minimization step: 4588. Total energy = 3129.9221 kcal/mol (3125.9504 without restraints) Performing minimization step: 4589. Total energy = 3129.8524 kcal/mol (3125.8815 without restraints) Performing minimization step: 4590. Total energy = 3129.7827 kcal/mol (3125.8126 without restraints) Performing minimization step: 4591. Total energy = 3129.7130 kcal/mol (3125.7438 without restraints) Performing minimization step: 4592. Total energy = 3129.6436 kcal/mol (3125.6752 without restraints) Performing minimization step: 4593. Total energy = 3129.5735 kcal/mol (3125.6058 without restraints) Performing minimization step: 4594. Total energy = 3129.5040 kcal/mol (3125.5372 without restraints) Performing minimization step: 4595. Total energy = 3129.4347 kcal/mol (3125.4687 without restraints) Performing minimization step: 4596. Total energy = 3129.3657 kcal/mol (3125.4005 without restraints) Performing minimization step: 4597. Total energy = 3129.2964 kcal/mol (3125.3321 without restraints) Performing minimization step: 4598. Total energy = 3129.2272 kcal/mol (3125.2637 without restraints) Performing minimization step: 4599. Total energy = 3129.1582 kcal/mol (3125.1956 without restraints) Performing minimization step: 4600. Total energy = 3129.0890 kcal/mol (3125.1271 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 3129.0199 kcal/mol (3125.0588 without restraints) Performing minimization step: 4602. Total energy = 3128.9511 kcal/mol (3124.9909 without restraints) Performing minimization step: 4603. Total energy = 3128.8822 kcal/mol (3124.9228 without restraints) Performing minimization step: 4604. Total energy = 3128.8133 kcal/mol (3124.8548 without restraints) Performing minimization step: 4605. Total energy = 3128.7445 kcal/mol (3124.7868 without restraints) Performing minimization step: 4606. Total energy = 3128.6757 kcal/mol (3124.7188 without restraints) Performing minimization step: 4607. Total energy = 3128.6074 kcal/mol (3124.6515 without restraints) Performing minimization step: 4608. Total energy = 3128.5391 kcal/mol (3124.5838 without restraints) Performing minimization step: 4609. Total energy = 3128.4707 kcal/mol (3124.5162 without restraints) Performing minimization step: 4610. Total energy = 3128.4020 kcal/mol (3124.4482 without restraints) Performing minimization step: 4611. Total energy = 3128.3332 kcal/mol (3124.3803 without restraints) Performing minimization step: 4612. Total energy = 3128.2645 kcal/mol (3124.3125 without restraints) Performing minimization step: 4613. Total energy = 3128.1960 kcal/mol (3124.2448 without restraints) Performing minimization step: 4614. Total energy = 3128.1277 kcal/mol (3124.1773 without restraints) Performing minimization step: 4615. Total energy = 3128.0593 kcal/mol (3124.1098 without restraints) Performing minimization step: 4616. Total energy = 3127.9911 kcal/mol (3124.0424 without restraints) Performing minimization step: 4617. Total energy = 3127.9229 kcal/mol (3123.9751 without restraints) Performing minimization step: 4618. Total energy = 3127.8547 kcal/mol (3123.9077 without restraints) Performing minimization step: 4619. Total energy = 3127.7868 kcal/mol (3123.8407 without restraints) Performing minimization step: 4620. Total energy = 3127.7187 kcal/mol (3123.7733 without restraints) Performing minimization step: 4621. Total energy = 3127.6510 kcal/mol (3123.7064 without restraints) Performing minimization step: 4622. Total energy = 3127.5831 kcal/mol (3123.6394 without restraints) Performing minimization step: 4623. Total energy = 3127.5153 kcal/mol (3123.5724 without restraints) Performing minimization step: 4624. Total energy = 3127.4476 kcal/mol (3123.5055 without restraints) Performing minimization step: 4625. Total energy = 3127.3799 kcal/mol (3123.4386 without restraints) Performing minimization step: 4626. Total energy = 3127.3121 kcal/mol (3123.3717 without restraints) Performing minimization step: 4627. Total energy = 3127.2443 kcal/mol (3123.3048 without restraints) Performing minimization step: 4628. Total energy = 3127.1765 kcal/mol (3123.2378 without restraints) Performing minimization step: 4629. Total energy = 3127.1092 kcal/mol (3123.1713 without restraints) Performing minimization step: 4630. Total energy = 3127.0418 kcal/mol (3123.1048 without restraints) Performing minimization step: 4631. Total energy = 3126.9743 kcal/mol (3123.0380 without restraints) Performing minimization step: 4632. Total energy = 3126.9066 kcal/mol (3122.9712 without restraints) Performing minimization step: 4633. Total energy = 3126.8398 kcal/mol (3122.9052 without restraints) Performing minimization step: 4634. Total energy = 3126.7723 kcal/mol (3122.8385 without restraints) Performing minimization step: 4635. Total energy = 3126.7051 kcal/mol (3122.7722 without restraints) Performing minimization step: 4636. Total energy = 3126.6383 kcal/mol (3122.7062 without restraints) Performing minimization step: 4637. Total energy = 3126.5712 kcal/mol (3122.6400 without restraints) Performing minimization step: 4638. Total energy = 3126.5042 kcal/mol (3122.5738 without restraints) Performing minimization step: 4639. Total energy = 3126.4374 kcal/mol (3122.5079 without restraints) Performing minimization step: 4640. Total energy = 3126.3709 kcal/mol (3122.4421 without restraints) Performing minimization step: 4641. Total energy = 3126.3040 kcal/mol (3122.3761 without restraints) Performing minimization step: 4642. Total energy = 3126.2372 kcal/mol (3122.3101 without restraints) Performing minimization step: 4643. Total energy = 3126.1700 kcal/mol (3122.2438 without restraints) Performing minimization step: 4644. Total energy = 3126.1034 kcal/mol (3122.1779 without restraints) Performing minimization step: 4645. Total energy = 3126.0370 kcal/mol (3122.1124 without restraints) Performing minimization step: 4646. Total energy = 3125.9707 kcal/mol (3122.0470 without restraints) Performing minimization step: 4647. Total energy = 3125.9038 kcal/mol (3121.9809 without restraints) Performing minimization step: 4648. Total energy = 3125.8373 kcal/mol (3121.9152 without restraints) Performing minimization step: 4649. Total energy = 3125.7709 kcal/mol (3121.8496 without restraints) Performing minimization step: 4650. Total energy = 3125.7043 kcal/mol (3121.7839 without restraints) Performing minimization step: 4651. Total energy = 3125.6380 kcal/mol (3121.7184 without restraints) Performing minimization step: 4652. Total energy = 3125.5715 kcal/mol (3121.6528 without restraints) Performing minimization step: 4653. Total energy = 3125.5053 kcal/mol (3121.5874 without restraints) Performing minimization step: 4654. Total energy = 3125.4392 kcal/mol (3121.5222 without restraints) Performing minimization step: 4655. Total energy = 3125.3735 kcal/mol (3121.4573 without restraints) Performing minimization step: 4656. Total energy = 3125.3075 kcal/mol (3121.3922 without restraints) Performing minimization step: 4657. Total energy = 3125.2414 kcal/mol (3121.3268 without restraints) Performing minimization step: 4658. Total energy = 3125.1757 kcal/mol (3121.2621 without restraints) Performing minimization step: 4659. Total energy = 3125.1098 kcal/mol (3121.1969 without restraints) Performing minimization step: 4660. Total energy = 3125.0439 kcal/mol (3121.1319 without restraints) Performing minimization step: 4661. Total energy = 3124.9780 kcal/mol (3121.0669 without restraints) Performing minimization step: 4662. Total energy = 3124.9123 kcal/mol (3121.0020 without restraints) Performing minimization step: 4663. Total energy = 3124.8466 kcal/mol (3120.9371 without restraints) Performing minimization step: 4664. Total energy = 3124.7809 kcal/mol (3120.8722 without restraints) Performing minimization step: 4665. Total energy = 3124.7151 kcal/mol (3120.8073 without restraints) Performing minimization step: 4666. Total energy = 3124.6495 kcal/mol (3120.7423 without restraints) Performing minimization step: 4667. Total energy = 3124.5836 kcal/mol (3120.6774 without restraints) Performing minimization step: 4668. Total energy = 3124.5182 kcal/mol (3120.6130 without restraints) Performing minimization step: 4669. Total energy = 3124.4529 kcal/mol (3120.5484 without restraints) Performing minimization step: 4670. Total energy = 3124.3876 kcal/mol (3120.4840 without restraints) Performing minimization step: 4671. Total energy = 3124.3223 kcal/mol (3120.4195 without restraints) Performing minimization step: 4672. Total energy = 3124.2570 kcal/mol (3120.3550 without restraints) Performing minimization step: 4673. Total energy = 3124.1921 kcal/mol (3120.2910 without restraints) Performing minimization step: 4674. Total energy = 3124.1270 kcal/mol (3120.2267 without restraints) Performing minimization step: 4675. Total energy = 3124.0615 kcal/mol (3120.1621 without restraints) Performing minimization step: 4676. Total energy = 3123.9968 kcal/mol (3120.0983 without restraints) Performing minimization step: 4677. Total energy = 3123.9316 kcal/mol (3120.0339 without restraints) Performing minimization step: 4678. Total energy = 3123.8665 kcal/mol (3119.9696 without restraints) Performing minimization step: 4679. Total energy = 3123.8017 kcal/mol (3119.9056 without restraints) Performing minimization step: 4680. Total energy = 3123.7364 kcal/mol (3119.8411 without restraints) Performing minimization step: 4681. Total energy = 3123.6714 kcal/mol (3119.7769 without restraints) Performing minimization step: 4682. Total energy = 3123.6063 kcal/mol (3119.7126 without restraints) Performing minimization step: 4683. Total energy = 3123.5417 kcal/mol (3119.6489 without restraints) Performing minimization step: 4684. Total energy = 3123.4767 kcal/mol (3119.5848 without restraints) Performing minimization step: 4685. Total energy = 3123.4115 kcal/mol (3119.5205 without restraints) Performing minimization step: 4686. Total energy = 3123.3468 kcal/mol (3119.4566 without restraints) Performing minimization step: 4687. Total energy = 3123.2819 kcal/mol (3119.3924 without restraints) Performing minimization step: 4688. Total energy = 3123.2167 kcal/mol (3119.3281 without restraints) Performing minimization step: 4689. Total energy = 3123.1522 kcal/mol (3119.2645 without restraints) Performing minimization step: 4690. Total energy = 3123.0877 kcal/mol (3119.2009 without restraints) Performing minimization step: 4691. Total energy = 3123.0232 kcal/mol (3119.1372 without restraints) Performing minimization step: 4692. Total energy = 3122.9585 kcal/mol (3119.0734 without restraints) Performing minimization step: 4693. Total energy = 3122.8941 kcal/mol (3119.0098 without restraints) Performing minimization step: 4694. Total energy = 3122.8302 kcal/mol (3118.9467 without restraints) Performing minimization step: 4695. Total energy = 3122.7658 kcal/mol (3118.8831 without restraints) Performing minimization step: 4696. Total energy = 3122.7011 kcal/mol (3118.8193 without restraints) Performing minimization step: 4697. Total energy = 3122.6369 kcal/mol (3118.7561 without restraints) Performing minimization step: 4698. Total energy = 3122.5730 kcal/mol (3118.6928 without restraints) Performing minimization step: 4699. Total energy = 3122.5088 kcal/mol (3118.6295 without restraints) Performing minimization step: 4700. Total energy = 3122.4451 kcal/mol (3118.5668 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 3122.3814 kcal/mol (3118.5038 without restraints) Performing minimization step: 4702. Total energy = 3122.3173 kcal/mol (3118.4407 without restraints) Performing minimization step: 4703. Total energy = 3122.2534 kcal/mol (3118.3775 without restraints) Performing minimization step: 4704. Total energy = 3122.1895 kcal/mol (3118.3144 without restraints) Performing minimization step: 4705. Total energy = 3122.1255 kcal/mol (3118.2513 without restraints) Performing minimization step: 4706. Total energy = 3122.0615 kcal/mol (3118.1881 without restraints) Performing minimization step: 4707. Total energy = 3121.9976 kcal/mol (3118.1251 without restraints) Performing minimization step: 4708. Total energy = 3121.9339 kcal/mol (3118.0623 without restraints) Performing minimization step: 4709. Total energy = 3121.8699 kcal/mol (3117.9991 without restraints) Performing minimization step: 4710. Total energy = 3121.8064 kcal/mol (3117.9363 without restraints) Performing minimization step: 4711. Total energy = 3121.7426 kcal/mol (3117.8735 without restraints) Performing minimization step: 4712. Total energy = 3121.6790 kcal/mol (3117.8108 without restraints) Performing minimization step: 4713. Total energy = 3121.6156 kcal/mol (3117.7481 without restraints) Performing minimization step: 4714. Total energy = 3121.5515 kcal/mol (3117.6849 without restraints) Performing minimization step: 4715. Total energy = 3121.4881 kcal/mol (3117.6223 without restraints) Performing minimization step: 4716. Total energy = 3121.4246 kcal/mol (3117.5596 without restraints) Performing minimization step: 4717. Total energy = 3121.3617 kcal/mol (3117.4976 without restraints) Performing minimization step: 4718. Total energy = 3121.2982 kcal/mol (3117.4349 without restraints) Performing minimization step: 4719. Total energy = 3121.2351 kcal/mol (3117.3727 without restraints) Performing minimization step: 4720. Total energy = 3121.1715 kcal/mol (3117.3099 without restraints) Performing minimization step: 4721. Total energy = 3121.1078 kcal/mol (3117.2471 without restraints) Performing minimization step: 4722. Total energy = 3121.0446 kcal/mol (3117.1847 without restraints) Performing minimization step: 4723. Total energy = 3120.9813 kcal/mol (3117.1222 without restraints) Performing minimization step: 4724. Total energy = 3120.9179 kcal/mol (3117.0597 without restraints) Performing minimization step: 4725. Total energy = 3120.8546 kcal/mol (3116.9972 without restraints) Performing minimization step: 4726. Total energy = 3120.7919 kcal/mol (3116.9354 without restraints) Performing minimization step: 4727. Total energy = 3120.7285 kcal/mol (3116.8728 without restraints) Performing minimization step: 4728. Total energy = 3120.6655 kcal/mol (3116.8107 without restraints) Performing minimization step: 4729. Total energy = 3120.6024 kcal/mol (3116.7484 without restraints) Performing minimization step: 4730. Total energy = 3120.5393 kcal/mol (3116.6861 without restraints) Performing minimization step: 4731. Total energy = 3120.4764 kcal/mol (3116.6241 without restraints) Performing minimization step: 4732. Total energy = 3120.4131 kcal/mol (3116.5616 without restraints) Performing minimization step: 4733. Total energy = 3120.3503 kcal/mol (3116.4997 without restraints) Performing minimization step: 4734. Total energy = 3120.2869 kcal/mol (3116.4371 without restraints) Performing minimization step: 4735. Total energy = 3120.2240 kcal/mol (3116.3750 without restraints) Performing minimization step: 4736. Total energy = 3120.1610 kcal/mol (3116.3129 without restraints) Performing minimization step: 4737. Total energy = 3120.0981 kcal/mol (3116.2508 without restraints) Performing minimization step: 4738. Total energy = 3120.0355 kcal/mol (3116.1891 without restraints) Performing minimization step: 4739. Total energy = 3119.9724 kcal/mol (3116.1268 without restraints) Performing minimization step: 4740. Total energy = 3119.9097 kcal/mol (3116.0651 without restraints) Performing minimization step: 4741. Total energy = 3119.8473 kcal/mol (3116.0034 without restraints) Performing minimization step: 4742. Total energy = 3119.7846 kcal/mol (3115.9415 without restraints) Performing minimization step: 4743. Total energy = 3119.7225 kcal/mol (3115.8805 without restraints) Performing minimization step: 4744. Total energy = 3119.6602 kcal/mol (3115.8189 without restraints) Performing minimization step: 4745. Total energy = 3119.5976 kcal/mol (3115.7570 without restraints) Performing minimization step: 4746. Total energy = 3119.5351 kcal/mol (3115.6954 without restraints) Performing minimization step: 4747. Total energy = 3119.4727 kcal/mol (3115.6339 without restraints) Performing minimization step: 4748. Total energy = 3119.4106 kcal/mol (3115.5726 without restraints) Performing minimization step: 4749. Total energy = 3119.3481 kcal/mol (3115.5109 without restraints) Performing minimization step: 4750. Total energy = 3119.2855 kcal/mol (3115.4492 without restraints) Performing minimization step: 4751. Total energy = 3119.2234 kcal/mol (3115.3879 without restraints) Performing minimization step: 4752. Total energy = 3119.1611 kcal/mol (3115.3265 without restraints) Performing minimization step: 4753. Total energy = 3119.0984 kcal/mol (3115.2645 without restraints) Performing minimization step: 4754. Total energy = 3119.0357 kcal/mol (3115.2026 without restraints) Performing minimization step: 4755. Total energy = 3118.9737 kcal/mol (3115.1416 without restraints) Performing minimization step: 4756. Total energy = 3118.9116 kcal/mol (3115.0803 without restraints) Performing minimization step: 4757. Total energy = 3118.8492 kcal/mol (3115.0188 without restraints) Performing minimization step: 4758. Total energy = 3118.7869 kcal/mol (3114.9573 without restraints) Performing minimization step: 4759. Total energy = 3118.7248 kcal/mol (3114.8961 without restraints) Performing minimization step: 4760. Total energy = 3118.6628 kcal/mol (3114.8349 without restraints) Performing minimization step: 4761. Total energy = 3118.6009 kcal/mol (3114.7739 without restraints) Performing minimization step: 4762. Total energy = 3118.5387 kcal/mol (3114.7125 without restraints) Performing minimization step: 4763. Total energy = 3118.4767 kcal/mol (3114.6514 without restraints) Performing minimization step: 4764. Total energy = 3118.4145 kcal/mol (3114.5898 without restraints) Performing minimization step: 4765. Total energy = 3118.3524 kcal/mol (3114.5289 without restraints) Performing minimization step: 4766. Total energy = 3118.2909 kcal/mol (3114.4680 without restraints) Performing minimization step: 4767. Total energy = 3118.2286 kcal/mol (3114.4067 without restraints) Performing minimization step: 4768. Total energy = 3118.1671 kcal/mol (3114.3459 without restraints) Performing minimization step: 4769. Total energy = 3118.1052 kcal/mol (3114.2849 without restraints) Performing minimization step: 4770. Total energy = 3118.0433 kcal/mol (3114.2238 without restraints) Performing minimization step: 4771. Total energy = 3117.9820 kcal/mol (3114.1633 without restraints) Performing minimization step: 4772. Total energy = 3117.9197 kcal/mol (3114.1019 without restraints) Performing minimization step: 4773. Total energy = 3117.8579 kcal/mol (3114.0410 without restraints) Performing minimization step: 4774. Total energy = 3117.7959 kcal/mol (3113.9797 without restraints) Performing minimization step: 4775. Total energy = 3117.7340 kcal/mol (3113.9188 without restraints) Performing minimization step: 4776. Total energy = 3117.6722 kcal/mol (3113.8577 without restraints) Performing minimization step: 4777. Total energy = 3117.6105 kcal/mol (3113.7969 without restraints) Performing minimization step: 4778. Total energy = 3117.5482 kcal/mol (3113.7353 without restraints) Performing minimization step: 4779. Total energy = 3117.4866 kcal/mol (3113.6746 without restraints) Performing minimization step: 4780. Total energy = 3117.4244 kcal/mol (3113.6133 without restraints) Performing minimization step: 4781. Total energy = 3117.3625 kcal/mol (3113.5523 without restraints) Performing minimization step: 4782. Total energy = 3117.3012 kcal/mol (3113.4918 without restraints) Performing minimization step: 4783. Total energy = 3117.2394 kcal/mol (3113.4308 without restraints) Performing minimization step: 4784. Total energy = 3117.1776 kcal/mol (3113.3699 without restraints) Performing minimization step: 4785. Total energy = 3117.1159 kcal/mol (3113.3090 without restraints) Performing minimization step: 4786. Total energy = 3117.0542 kcal/mol (3113.2482 without restraints) Performing minimization step: 4787. Total energy = 3116.9926 kcal/mol (3113.1874 without restraints) Performing minimization step: 4788. Total energy = 3116.9316 kcal/mol (3113.1272 without restraints) Performing minimization step: 4789. Total energy = 3116.8704 kcal/mol (3113.0669 without restraints) Performing minimization step: 4790. Total energy = 3116.8089 kcal/mol (3113.0063 without restraints) Performing minimization step: 4791. Total energy = 3116.7473 kcal/mol (3112.9455 without restraints) Performing minimization step: 4792. Total energy = 3116.6856 kcal/mol (3112.8846 without restraints) Performing minimization step: 4793. Total energy = 3116.6245 kcal/mol (3112.8241 without restraints) Performing minimization step: 4794. Total energy = 3116.5627 kcal/mol (3112.7633 without restraints) Performing minimization step: 4795. Total energy = 3116.5014 kcal/mol (3112.7028 without restraints) Performing minimization step: 4796. Total energy = 3116.4396 kcal/mol (3112.6419 without restraints) Performing minimization step: 4797. Total energy = 3116.3781 kcal/mol (3112.5812 without restraints) Performing minimization step: 4798. Total energy = 3116.3169 kcal/mol (3112.5209 without restraints) Performing minimization step: 4799. Total energy = 3116.2560 kcal/mol (3112.4609 without restraints) Performing minimization step: 4800. Total energy = 3116.1943 kcal/mol (3112.4000 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 3116.1330 kcal/mol (3112.3395 without restraints) Performing minimization step: 4802. Total energy = 3116.0717 kcal/mol (3112.2792 without restraints) Performing minimization step: 4803. Total energy = 3116.0109 kcal/mol (3112.2191 without restraints) Performing minimization step: 4804. Total energy = 3115.9497 kcal/mol (3112.1587 without restraints) Performing minimization step: 4805. Total energy = 3115.8884 kcal/mol (3112.0982 without restraints) Performing minimization step: 4806. Total energy = 3115.8274 kcal/mol (3112.0381 without restraints) Performing minimization step: 4807. Total energy = 3115.7662 kcal/mol (3111.9777 without restraints) Performing minimization step: 4808. Total energy = 3115.7050 kcal/mol (3111.9173 without restraints) Performing minimization step: 4809. Total energy = 3115.6435 kcal/mol (3111.8566 without restraints) Performing minimization step: 4810. Total energy = 3115.5822 kcal/mol (3111.7962 without restraints) Performing minimization step: 4811. Total energy = 3115.5211 kcal/mol (3111.7360 without restraints) Performing minimization step: 4812. Total energy = 3115.4601 kcal/mol (3111.6758 without restraints) Performing minimization step: 4813. Total energy = 3115.3992 kcal/mol (3111.6158 without restraints) Performing minimization step: 4814. Total energy = 3115.3379 kcal/mol (3111.5551 without restraints) Performing minimization step: 4815. Total energy = 3115.2767 kcal/mol (3111.4949 without restraints) Performing minimization step: 4816. Total energy = 3115.2158 kcal/mol (3111.4349 without restraints) Performing minimization step: 4817. Total energy = 3115.1550 kcal/mol (3111.3749 without restraints) Performing minimization step: 4818. Total energy = 3115.0942 kcal/mol (3111.3149 without restraints) Performing minimization step: 4819. Total energy = 3115.0337 kcal/mol (3111.2552 without restraints) Performing minimization step: 4820. Total energy = 3114.9729 kcal/mol (3111.1952 without restraints) Performing minimization step: 4821. Total energy = 3114.9121 kcal/mol (3111.1353 without restraints) Performing minimization step: 4822. Total energy = 3114.8513 kcal/mol (3111.0753 without restraints) Performing minimization step: 4823. Total energy = 3114.7908 kcal/mol (3111.0159 without restraints) Performing minimization step: 4824. Total energy = 3114.7304 kcal/mol (3110.9561 without restraints) Performing minimization step: 4825. Total energy = 3114.6693 kcal/mol (3110.8959 without restraints) Performing minimization step: 4826. Total energy = 3114.6085 kcal/mol (3110.8359 without restraints) Performing minimization step: 4827. Total energy = 3114.5479 kcal/mol (3110.7761 without restraints) Performing minimization step: 4828. Total energy = 3114.4871 kcal/mol (3110.7161 without restraints) Performing minimization step: 4829. Total energy = 3114.4263 kcal/mol (3110.6561 without restraints) Performing minimization step: 4830. Total energy = 3114.3655 kcal/mol (3110.5962 without restraints) Performing minimization step: 4831. Total energy = 3114.3047 kcal/mol (3110.5362 without restraints) Performing minimization step: 4832. Total energy = 3114.2439 kcal/mol (3110.4763 without restraints) Performing minimization step: 4833. Total energy = 3114.1830 kcal/mol (3110.4162 without restraints) Performing minimization step: 4834. Total energy = 3114.1225 kcal/mol (3110.3568 without restraints) Performing minimization step: 4835. Total energy = 3114.0620 kcal/mol (3110.2969 without restraints) Performing minimization step: 4836. Total energy = 3114.0013 kcal/mol (3110.2370 without restraints) Performing minimization step: 4837. Total energy = 3113.9404 kcal/mol (3110.1770 without restraints) Performing minimization step: 4838. Total energy = 3113.8797 kcal/mol (3110.1171 without restraints) Performing minimization step: 4839. Total energy = 3113.8193 kcal/mol (3110.0575 without restraints) Performing minimization step: 4840. Total energy = 3113.7586 kcal/mol (3109.9975 without restraints) Performing minimization step: 4841. Total energy = 3113.6984 kcal/mol (3109.9384 without restraints) Performing minimization step: 4842. Total energy = 3113.6380 kcal/mol (3109.8786 without restraints) Performing minimization step: 4843. Total energy = 3113.5775 kcal/mol (3109.8189 without restraints) Performing minimization step: 4844. Total energy = 3113.5164 kcal/mol (3109.7587 without restraints) Performing minimization step: 4845. Total energy = 3113.4557 kcal/mol (3109.6988 without restraints) Performing minimization step: 4846. Total energy = 3113.3954 kcal/mol (3109.6398 without restraints) Performing minimization step: 4847. Total energy = 3113.3352 kcal/mol (3109.5801 without restraints) Performing minimization step: 4848. Total energy = 3113.2746 kcal/mol (3109.5204 without restraints) Performing minimization step: 4849. Total energy = 3113.2143 kcal/mol (3109.4607 without restraints) Performing minimization step: 4850. Total energy = 3113.1538 kcal/mol (3109.4011 without restraints) Performing minimization step: 4851. Total energy = 3113.0936 kcal/mol (3109.3417 without restraints) Performing minimization step: 4852. Total energy = 3113.0332 kcal/mol (3109.2822 without restraints) Performing minimization step: 4853. Total energy = 3112.9728 kcal/mol (3109.2226 without restraints) Performing minimization step: 4854. Total energy = 3112.9124 kcal/mol (3109.1630 without restraints) Performing minimization step: 4855. Total energy = 3112.8518 kcal/mol (3109.1033 without restraints) Performing minimization step: 4856. Total energy = 3112.7917 kcal/mol (3109.0440 without restraints) Performing minimization step: 4857. Total energy = 3112.7313 kcal/mol (3108.9845 without restraints) Performing minimization step: 4858. Total energy = 3112.6712 kcal/mol (3108.9251 without restraints) Performing minimization step: 4859. Total energy = 3112.6109 kcal/mol (3108.8657 without restraints) Performing minimization step: 4860. Total energy = 3112.5506 kcal/mol (3108.8062 without restraints) Performing minimization step: 4861. Total energy = 3112.4904 kcal/mol (3108.7468 without restraints) Performing minimization step: 4862. Total energy = 3112.4299 kcal/mol (3108.6872 without restraints) Performing minimization step: 4863. Total energy = 3112.3697 kcal/mol (3108.6278 without restraints) Performing minimization step: 4864. Total energy = 3112.3094 kcal/mol (3108.5683 without restraints) Performing minimization step: 4865. Total energy = 3112.2495 kcal/mol (3108.5093 without restraints) Performing minimization step: 4866. Total energy = 3112.1890 kcal/mol (3108.4495 without restraints) Performing minimization step: 4867. Total energy = 3112.1287 kcal/mol (3108.3901 without restraints) Performing minimization step: 4868. Total energy = 3112.0687 kcal/mol (3108.3309 without restraints) Performing minimization step: 4869. Total energy = 3112.0085 kcal/mol (3108.2716 without restraints) Performing minimization step: 4870. Total energy = 3111.9483 kcal/mol (3108.2121 without restraints) Performing minimization step: 4871. Total energy = 3111.8881 kcal/mol (3108.1528 without restraints) Performing minimization step: 4872. Total energy = 3111.8276 kcal/mol (3108.0931 without restraints) Performing minimization step: 4873. Total energy = 3111.7672 kcal/mol (3108.0335 without restraints) Performing minimization step: 4874. Total energy = 3111.7066 kcal/mol (3107.9738 without restraints) Performing minimization step: 4875. Total energy = 3111.6469 kcal/mol (3107.9149 without restraints) Performing minimization step: 4876. Total energy = 3111.5869 kcal/mol (3107.8557 without restraints) Performing minimization step: 4877. Total energy = 3111.5268 kcal/mol (3107.7965 without restraints) Performing minimization step: 4878. Total energy = 3111.4667 kcal/mol (3107.7372 without restraints) Performing minimization step: 4879. Total energy = 3111.4067 kcal/mol (3107.6780 without restraints) Performing minimization step: 4880. Total energy = 3111.3469 kcal/mol (3107.6191 without restraints) Performing minimization step: 4881. Total energy = 3111.2870 kcal/mol (3107.5599 without restraints) Performing minimization step: 4882. Total energy = 3111.2272 kcal/mol (3107.5010 without restraints) Performing minimization step: 4883. Total energy = 3111.1677 kcal/mol (3107.4423 without restraints) Performing minimization step: 4884. Total energy = 3111.1084 kcal/mol (3107.3838 without restraints) Performing minimization step: 4885. Total energy = 3111.0490 kcal/mol (3107.3252 without restraints) Performing minimization step: 4886. Total energy = 3110.9888 kcal/mol (3107.2659 without restraints) Performing minimization step: 4887. Total energy = 3110.9291 kcal/mol (3107.2070 without restraints) Performing minimization step: 4888. Total energy = 3110.8692 kcal/mol (3107.1480 without restraints) Performing minimization step: 4889. Total energy = 3110.8092 kcal/mol (3107.0887 without restraints) Performing minimization step: 4890. Total energy = 3110.7495 kcal/mol (3107.0297 without restraints) Performing minimization step: 4891. Total energy = 3110.6893 kcal/mol (3106.9705 without restraints) Performing minimization step: 4892. Total energy = 3110.6292 kcal/mol (3106.9112 without restraints) Performing minimization step: 4893. Total energy = 3110.5692 kcal/mol (3106.8520 without restraints) Performing minimization step: 4894. Total energy = 3110.5092 kcal/mol (3106.7928 without restraints) Performing minimization step: 4895. Total energy = 3110.4494 kcal/mol (3106.7339 without restraints) Performing minimization step: 4896. Total energy = 3110.3897 kcal/mol (3106.6750 without restraints) Performing minimization step: 4897. Total energy = 3110.3303 kcal/mol (3106.6164 without restraints) Performing minimization step: 4898. Total energy = 3110.2705 kcal/mol (3106.5573 without restraints) Performing minimization step: 4899. Total energy = 3110.2112 kcal/mol (3106.4989 without restraints) Performing minimization step: 4900. Total energy = 3110.1515 kcal/mol (3106.4400 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 3110.0919 kcal/mol (3106.3813 without restraints) Performing minimization step: 4902. Total energy = 3110.0323 kcal/mol (3106.3225 without restraints) Performing minimization step: 4903. Total energy = 3109.9730 kcal/mol (3106.2640 without restraints) Performing minimization step: 4904. Total energy = 3109.9133 kcal/mol (3106.2051 without restraints) Performing minimization step: 4905. Total energy = 3109.8537 kcal/mol (3106.1462 without restraints) Performing minimization step: 4906. Total energy = 3109.7939 kcal/mol (3106.0874 without restraints) Performing minimization step: 4907. Total energy = 3109.7341 kcal/mol (3106.0284 without restraints) Performing minimization step: 4908. Total energy = 3109.6747 kcal/mol (3105.9698 without restraints) Performing minimization step: 4909. Total energy = 3109.6151 kcal/mol (3105.9110 without restraints) Performing minimization step: 4910. Total energy = 3109.5557 kcal/mol (3105.8524 without restraints) Performing minimization step: 4911. Total energy = 3109.4962 kcal/mol (3105.7939 without restraints) Performing minimization step: 4912. Total energy = 3109.4372 kcal/mol (3105.7356 without restraints) Performing minimization step: 4913. Total energy = 3109.3777 kcal/mol (3105.6769 without restraints) Performing minimization step: 4914. Total energy = 3109.3181 kcal/mol (3105.6181 without restraints) Performing minimization step: 4915. Total energy = 3109.2585 kcal/mol (3105.5594 without restraints) Performing minimization step: 4916. Total energy = 3109.1988 kcal/mol (3105.5005 without restraints) Performing minimization step: 4917. Total energy = 3109.1393 kcal/mol (3105.4418 without restraints) Performing minimization step: 4918. Total energy = 3109.0796 kcal/mol (3105.3829 without restraints) Performing minimization step: 4919. Total energy = 3109.0199 kcal/mol (3105.3240 without restraints) Performing minimization step: 4920. Total energy = 3108.9603 kcal/mol (3105.2652 without restraints) Performing minimization step: 4921. Total energy = 3108.9011 kcal/mol (3105.2068 without restraints) Performing minimization step: 4922. Total energy = 3108.8419 kcal/mol (3105.1486 without restraints) Performing minimization step: 4923. Total energy = 3108.7827 kcal/mol (3105.0901 without restraints) Performing minimization step: 4924. Total energy = 3108.7233 kcal/mol (3105.0314 without restraints) Performing minimization step: 4925. Total energy = 3108.6640 kcal/mol (3104.9731 without restraints) Performing minimization step: 4926. Total energy = 3108.6047 kcal/mol (3104.9145 without restraints) Performing minimization step: 4927. Total energy = 3108.5454 kcal/mol (3104.8560 without restraints) Performing minimization step: 4928. Total energy = 3108.4859 kcal/mol (3104.7972 without restraints) Performing minimization step: 4929. Total energy = 3108.4263 kcal/mol (3104.7385 without restraints) Performing minimization step: 4930. Total energy = 3108.3663 kcal/mol (3104.6794 without restraints) Performing minimization step: 4931. Total energy = 3108.3071 kcal/mol (3104.6209 without restraints) Performing minimization step: 4932. Total energy = 3108.2478 kcal/mol (3104.5625 without restraints) Performing minimization step: 4933. Total energy = 3108.1889 kcal/mol (3104.5044 without restraints) Performing minimization step: 4934. Total energy = 3108.1296 kcal/mol (3104.4459 without restraints) Performing minimization step: 4935. Total energy = 3108.0704 kcal/mol (3104.3875 without restraints) Performing minimization step: 4936. Total energy = 3108.0113 kcal/mol (3104.3293 without restraints) Performing minimization step: 4937. Total energy = 3107.9519 kcal/mol (3104.2707 without restraints) Performing minimization step: 4938. Total energy = 3107.8927 kcal/mol (3104.2125 without restraints) Performing minimization step: 4939. Total energy = 3107.8339 kcal/mol (3104.1542 without restraints) Performing minimization step: 4940. Total energy = 3107.7750 kcal/mol (3104.0962 without restraints) Performing minimization step: 4941. Total energy = 3107.7158 kcal/mol (3104.0378 without restraints) Performing minimization step: 4942. Total energy = 3107.6566 kcal/mol (3103.9794 without restraints) Performing minimization step: 4943. Total energy = 3107.5979 kcal/mol (3103.9215 without restraints) Performing minimization step: 4944. Total energy = 3107.5384 kcal/mol (3103.8628 without restraints) Performing minimization step: 4945. Total energy = 3107.4790 kcal/mol (3103.8042 without restraints) Performing minimization step: 4946. Total energy = 3107.4199 kcal/mol (3103.7459 without restraints) Performing minimization step: 4947. Total energy = 3107.3608 kcal/mol (3103.6877 without restraints) Performing minimization step: 4948. Total energy = 3107.3018 kcal/mol (3103.6294 without restraints) Performing minimization step: 4949. Total energy = 3107.2427 kcal/mol (3103.5711 without restraints) Performing minimization step: 4950. Total energy = 3107.1838 kcal/mol (3103.5131 without restraints) Performing minimization step: 4951. Total energy = 3107.1245 kcal/mol (3103.4545 without restraints) Performing minimization step: 4952. Total energy = 3107.0654 kcal/mol (3103.3963 without restraints) Performing minimization step: 4953. Total energy = 3107.0062 kcal/mol (3103.3379 without restraints) Performing minimization step: 4954. Total energy = 3106.9466 kcal/mol (3103.2791 without restraints) Performing minimization step: 4955. Total energy = 3106.8874 kcal/mol (3103.2208 without restraints) Performing minimization step: 4956. Total energy = 3106.8283 kcal/mol (3103.1624 without restraints) Performing minimization step: 4957. Total energy = 3106.7695 kcal/mol (3103.1044 without restraints) Performing minimization step: 4958. Total energy = 3106.7107 kcal/mol (3103.0464 without restraints) Performing minimization step: 4959. Total energy = 3106.6517 kcal/mol (3102.9883 without restraints) Performing minimization step: 4960. Total energy = 3106.5927 kcal/mol (3102.9300 without restraints) Performing minimization step: 4961. Total energy = 3106.5336 kcal/mol (3102.8718 without restraints) Performing minimization step: 4962. Total energy = 3106.4749 kcal/mol (3102.8139 without restraints) Performing minimization step: 4963. Total energy = 3106.4160 kcal/mol (3102.7557 without restraints) Performing minimization step: 4964. Total energy = 3106.3572 kcal/mol (3102.6980 without restraints) Performing minimization step: 4965. Total energy = 3106.2987 kcal/mol (3102.6401 without restraints) Performing minimization step: 4966. Total energy = 3106.2400 kcal/mol (3102.5822 without restraints) Performing minimization step: 4967. Total energy = 3106.1812 kcal/mol (3102.5243 without restraints) Performing minimization step: 4968. Total energy = 3106.1225 kcal/mol (3102.4664 without restraints) Performing minimization step: 4969. Total energy = 3106.0635 kcal/mol (3102.4081 without restraints) Performing minimization step: 4970. Total energy = 3106.0047 kcal/mol (3102.3501 without restraints) Performing minimization step: 4971. Total energy = 3105.9458 kcal/mol (3102.2920 without restraints) Performing minimization step: 4972. Total energy = 3105.8873 kcal/mol (3102.2343 without restraints) Performing minimization step: 4973. Total energy = 3105.8285 kcal/mol (3102.1763 without restraints) Performing minimization step: 4974. Total energy = 3105.7697 kcal/mol (3102.1184 without restraints) Performing minimization step: 4975. Total energy = 3105.7110 kcal/mol (3102.0604 without restraints) Performing minimization step: 4976. Total energy = 3105.6520 kcal/mol (3102.0021 without restraints) Performing minimization step: 4977. Total energy = 3105.5931 kcal/mol (3101.9442 without restraints) Performing minimization step: 4978. Total energy = 3105.5344 kcal/mol (3101.8863 without restraints) Performing minimization step: 4979. Total energy = 3105.4757 kcal/mol (3101.8284 without restraints) Performing minimization step: 4980. Total energy = 3105.4171 kcal/mol (3101.7707 without restraints) Performing minimization step: 4981. Total energy = 3105.3585 kcal/mol (3101.7128 without restraints) Performing minimization step: 4982. Total energy = 3105.3001 kcal/mol (3101.6551 without restraints) Performing minimization step: 4983. Total energy = 3105.2414 kcal/mol (3101.5973 without restraints) Performing minimization step: 4984. Total energy = 3105.1828 kcal/mol (3101.5396 without restraints) Performing minimization step: 4985. Total energy = 3105.1246 kcal/mol (3101.4821 without restraints) Performing minimization step: 4986. Total energy = 3105.0660 kcal/mol (3101.4241 without restraints) Performing minimization step: 4987. Total energy = 3105.0073 kcal/mol (3101.3664 without restraints) Performing minimization step: 4988. Total energy = 3104.9485 kcal/mol (3101.3083 without restraints) Performing minimization step: 4989. Total energy = 3104.8900 kcal/mol (3101.2508 without restraints) Performing minimization step: 4990. Total energy = 3104.8317 kcal/mol (3101.1931 without restraints) Performing minimization step: 4991. Total energy = 3104.7731 kcal/mol (3101.1354 without restraints) Performing minimization step: 4992. Total energy = 3104.7145 kcal/mol (3101.0776 without restraints) Performing minimization step: 4993. Total energy = 3104.6560 kcal/mol (3101.0198 without restraints) Performing minimization step: 4994. Total energy = 3104.5972 kcal/mol (3100.9618 without restraints) Performing minimization step: 4995. Total energy = 3104.5386 kcal/mol (3100.9041 without restraints) Performing minimization step: 4996. Total energy = 3104.4802 kcal/mol (3100.8464 without restraints) Performing minimization step: 4997. Total energy = 3104.4216 kcal/mol (3100.7886 without restraints) Performing minimization step: 4998. Total energy = 3104.3634 kcal/mol (3100.7312 without restraints) Performing minimization step: 4999. Total energy = 3104.3048 kcal/mol (3100.6735 without restraints) Performing minimization step: 5000. Total energy = 3104.2463 kcal/mol (3100.6157 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/3d2307cf/tmp/centroidss_refx/centroidss_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to centroidss_refx.pdb DONE!