usage: rna_refinement.py [-h] [-s STEPS] [-o OUTPUT_FILE] [-i] [-v] fn rna_refinement.py: error: unrecognized arguments: BAC E1 FILE 1.pdb MissingAtomsAdded_rpr.pdb model 1 yellow.pdb model1 added hydrogen.pdb model1.pdb sequencced DNA.pdb DONE!