============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 737 'H5' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 741 1H2' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 742 2H2' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 769 'H5' DA A 25 ... failed. Atom erased. Error: recognition of atom ATOM 773 1H2' DA A 25 ... failed. Atom erased. Error: recognition of atom ATOM 774 2H2' DA A 25 ... failed. Atom erased. Error: recognition of atom ATOM 799 'H5' DC A 26 ... failed. Atom erased. Error: recognition of atom ATOM 803 1H2' DC A 26 ... failed. Atom erased. Error: recognition of atom ATOM 804 2H2' DC A 26 ... failed. Atom erased. Error: recognition of atom ATOM 829 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 833 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 859 'H5' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 863 1H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 864 2H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 886 C5M DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 890 HN3 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 891 1HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 892 2HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 893 3HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 915 C5M DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 919 HN3 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 920 1HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 921 2HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 922 3HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 949 'H5' DA A 31 ... failed. Atom erased. Error: recognition of atom ATOM 953 1H2' DA A 31 ... failed. Atom erased. Error: recognition of atom ATOM 954 2H2' DA A 31 ... failed. Atom erased. Error: recognition of atom ATOM 981 'H5' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 985 1H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 986 2H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1013 'H5' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1017 1H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1018 2H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1043 'H5' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1047 1H2' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1048 2H2' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1075 'H5' DA A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1079 1H2' DA A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1080 2H2' DA A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1107 'H5' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1111 1H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1112 2H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1139 'H5' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1143 1H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1144 2H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1166 C5M DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1170 HN3 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1171 1HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1172 2HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1173 3HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1201 'H5' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1205 1H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1206 2H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1228 C5M DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1232 HN3 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1233 1HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1234 2HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1235 3HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1260 'H5' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1264 1H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1265 2H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1292 'H5' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1296 1H2' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1297 2H2' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1324 'H5' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1328 1H2' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1329 2H2' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1356 'H5' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1360 1H2' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1361 2H2' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1386 'H5' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1390 1H2' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1391 2H2' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1413 C5M DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1417 HN3 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1418 1HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1419 2HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1420 3HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1442 C5M DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1446 HN3 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1447 1HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1448 2HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1449 3HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1474 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1478 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1479 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1506 'H5' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1510 1H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1511 2H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1533 C5M DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1537 HN3 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1538 1HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1539 2HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1540 3HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1562 C5M DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1566 HN3 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1567 1HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1568 2HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1569 3HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1591 C5M DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1595 HN3 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1596 1HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1597 2HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1598 3HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1623 'H5' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1627 1H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1628 2H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1650 C5M DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1654 HN3 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1655 1HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1656 2HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1657 3HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1682 'H5' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1686 1H2' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1687 2H2' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1709 C5M DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1713 HN3 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1714 1HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1715 2HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1716 3HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1738 C5M DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1742 HN3 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1743 1HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1744 2HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1745 3HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1767 C5M DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1771 HN3 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1772 1HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1773 2HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1774 3HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1796 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1800 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1801 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1802 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1803 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1830 'H5' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1834 1H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1835 2H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1863 'H5' DG A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1867 1H2' DG A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1868 2H2' DG A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1890 C5M DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1894 HN3 DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1895 1HM5 DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1896 2HM5 DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1897 3HM5 DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1925 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1929 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1930 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1958 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1962 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1963 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1985 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1989 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1990 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1991 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1992 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2017 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2021 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2022 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2050 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2054 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2055 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2082 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2086 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2087 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2112 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2116 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2117 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2145 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2149 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2150 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2177 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2181 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2182 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2210 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2214 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2215 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2243 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2247 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2248 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2270 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2274 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2275 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2276 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2277 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2302 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2306 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2307 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2329 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2333 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2334 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2335 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2336 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2363 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2367 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2368 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2396 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2400 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2401 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2428 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2432 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2433 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2460 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2464 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2465 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2487 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2491 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2492 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2493 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2494 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2521 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2525 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2526 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2551 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2555 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2556 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2581 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2585 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2586 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2613 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2617 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2618 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2646 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2647 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2651 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2652 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 -1.387 0.407 -3.058 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 0.647 -1.142 -1.610 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.307 -0.509 2.377 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.431 -0.444 3.065 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.549 -5.132 3.720 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -2.400 -2.638 6.354 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -2.512 -4.056 7.389 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -5.170 0.632 5.471 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -4.039 -1.674 1.674 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.653 -0.827 1.090 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -5.093 -1.826 1.398 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -3.479 -2.573 1.379 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -4.364 -7.469 7.746 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.284 -5.432 10.236 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.221 -4.968 8.532 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -10.891 -8.030 9.293 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.662 -4.982 8.914 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -13.636 -5.279 6.937 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -16.998 -8.042 6.766 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -18.796 -4.801 4.237 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -17.508 -5.495 2.876 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -20.322 -7.753 1.614 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -19.977 -4.708 -1.578 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -18.539 -5.859 -2.355 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -21.215 -8.197 -4.592 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -16.555 -7.722 -5.861 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -17.053 -8.431 -7.392 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -12.945 -8.286 -3.510 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -16.540 -10.387 -1.521 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -16.406 -9.985 -0.519 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -16.055 -11.361 -1.591 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -17.604 -10.497 -1.730 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -17.480 -10.919 -9.348 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -13.626 -9.672 -10.788 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -12.856 -11.088 -9.605 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -13.487 -14.622 -12.478 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -9.050 -15.271 -11.955 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -9.472 -16.037 -10.157 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -9.806 -19.558 -11.319 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 -5.970 -20.092 -9.407 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -6.996 -20.490 -7.738 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 -7.324 -24.470 -8.380 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 -8.128 -22.580 -3.977 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 -7.828 -24.191 -3.338 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -11.065 -19.383 -2.940 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -12.106 -21.396 -6.981 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -12.348 -20.472 -7.512 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -13.031 -21.834 -6.592 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -11.652 -22.100 -7.683 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 -8.561 -28.012 -3.322 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 -9.804 -25.351 0.265 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 -9.895 -26.823 1.224 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -12.887 -22.413 0.641 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -12.524 -23.707 -3.757 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -12.533 -22.714 -4.207 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -13.539 -24.109 -3.748 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -11.884 -24.364 -4.348 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 -11.957 -29.713 2.317 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -14.084 -26.458 4.865 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -15.369 -26.190 3.357 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -17.396 -28.878 5.831 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -19.889 -25.589 7.210 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -20.562 -25.394 5.338 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -22.634 -29.387 5.108 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -25.174 -25.898 2.985 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -24.493 -26.548 1.222 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -27.738 -28.279 0.623 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -28.890 -25.514 -2.650 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -27.628 -26.669 -3.684 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -30.087 -29.243 -4.987 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -28.691 -28.299 -8.943 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -27.358 -29.749 -8.600 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -27.698 -33.481 -7.128 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -25.519 -35.685 -10.851 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -25.145 -33.902 -11.676 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -21.130 -33.369 -10.134 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -21.322 -31.120 -14.195 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -21.999 -29.513 -13.217 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -18.696 -28.043 -13.472 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -20.707 -24.838 -15.926 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -20.822 -23.977 -14.125 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 -18.943 -22.985 -12.157 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 -21.685 -21.937 -10.890 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 -20.802 -22.548 -9.205 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 -20.918 -18.405 -8.942 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 -23.935 -18.954 -6.229 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 -22.463 -19.613 -5.047 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 -22.960 -15.432 -4.252 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -25.872 -16.287 -0.859 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 -24.158 -16.679 0.093 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 24 -22.615 -12.994 1.782 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 24 -21.759 -15.087 5.194 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 24 -20.004 -15.389 4.285 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 25 -18.342 -12.574 6.083 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 25 -15.959 -15.801 7.771 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 25 -14.726 -15.367 6.258 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 26 -12.057 -13.067 7.616 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 26 -8.848 -15.495 5.970 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 26 -9.288 -14.436 4.332 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 -6.563 -11.896 5.537 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 -3.647 -13.284 2.608 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 -4.698 -12.156 1.336 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 28 -2.279 -9.124 1.846 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 28 -1.830 -9.552 -2.540 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 28 -3.483 -8.429 -2.584 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 29 -0.433 -6.022 -2.868 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 29 -4.406 -6.305 -5.752 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 29 -3.526 -5.385 -6.966 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 29 -8.673 -6.898 -4.391 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 29 -6.228 -4.078 -1.678 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 29 -6.664 -4.429 -0.734 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 29 -6.787 -3.190 -2.007 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 29 -5.190 -3.776 -1.486 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 30 -0.834 -2.743 -8.257 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 30 -5.472 -2.621 -10.102 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 30 -4.833 -1.650 -11.422 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 30 -9.306 -2.742 -7.986 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 30 -5.979 -1.848 -4.993 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 30 -6.151 -2.682 -4.297 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 30 -6.529 -0.972 -4.614 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 30 -4.906 -1.606 -4.973 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 31 -4.401 1.451 -12.556 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 31 -8.793 2.391 -13.018 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 31 -8.427 3.545 -11.427 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 32 -7.520 6.053 -14.726 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 32 -10.520 9.081 -12.785 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 32 -8.983 9.904 -11.807 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 33 -6.279 12.366 -14.379 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 33 -4.763 14.729 -15.721 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 33 -6.610 15.388 -16.109 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 34 -9.367 16.180 -13.066 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 34 -9.866 16.729 -9.054 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 34 -9.139 18.344 -9.982 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 35 -12.680 17.798 -14.914 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 35 -14.553 16.514 -16.993 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 35 -14.730 18.451 -17.458 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 36 -10.859 19.410 -19.820 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 36 -13.520 19.353 -21.449 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 36 -13.779 21.266 -20.930 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 37 -9.482 21.531 -25.154 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 37 -11.052 25.911 -26.544 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 37 -9.966 26.653 -25.039 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 38 -6.791 25.863 -28.584 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 38 -7.153 29.982 -25.708 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 38 -6.280 30.942 -26.896 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 38 -7.520 30.947 -21.681 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 38 -6.853 26.452 -21.918 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 38 -7.634 26.177 -21.207 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 38 -5.904 26.555 -21.384 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 38 -6.755 25.660 -22.663 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 39 -3.296 31.925 -28.560 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 39 -3.487 35.929 -27.031 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 39 -2.364 35.191 -25.551 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 40 0.846 36.317 -27.580 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 40 1.708 35.552 -23.205 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 40 2.971 36.759 -23.411 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 40 1.231 32.237 -20.550 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 40 1.704 30.988 -24.946 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 40 0.901 30.258 -24.952 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 40 2.652 30.498 -24.739 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 40 1.751 31.498 -25.902 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 41 6.314 36.382 -23.797 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 41 7.281 40.080 -20.707 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 41 8.396 38.787 -19.668 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 42 10.399 36.242 -24.343 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 42 13.664 34.216 -22.484 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 42 12.875 34.815 -20.747 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 43 10.544 31.357 -20.004 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 43 11.989 31.726 -16.004 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 43 10.431 32.924 -15.634 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 44 6.730 29.124 -15.165 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 44 3.362 30.109 -12.934 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 44 2.747 30.982 -14.624 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 45 0.845 28.148 -16.985 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 45 -1.630 27.928 -13.857 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 45 -2.573 28.808 -15.384 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 46 -4.777 25.994 -17.354 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 46 -8.099 25.237 -13.930 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 46 -7.706 26.568 -12.850 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 46 -10.139 21.615 -12.469 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 46 -5.741 20.827 -13.711 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 46 -5.934 19.874 -14.208 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 46 -5.412 20.634 -12.686 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 46 -4.948 21.353 -14.246 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 47 -6.221 29.902 -12.240 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 47 -3.539 30.834 -12.988 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 47 -3.204 32.496 -12.517 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 47 0.781 30.573 -8.655 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 47 -0.602 27.532 -11.805 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 47 -0.741 26.687 -11.133 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 47 0.399 27.494 -12.235 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 47 -1.341 27.487 -12.603 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 -6.120 36.232 -11.226 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 -4.758 38.668 -14.854 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 -5.836 37.520 -16.085 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 49 -10.077 37.794 -14.842 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 49 -10.658 38.118 -19.203 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 49 -11.083 36.165 -19.145 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 50 -15.392 37.750 -17.955 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 50 -14.091 33.751 -20.518 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 50 -15.672 33.692 -21.286 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 50 -12.217 30.205 -19.527 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 50 -12.408 32.938 -15.798 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 50 -11.410 32.671 -15.443 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 50 -13.146 32.303 -15.299 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 50 -12.609 33.981 -15.542 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 51 -20.150 34.333 -20.921 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 51 -17.813 30.061 -22.274 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 51 -19.294 29.506 -23.045 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 51 -15.766 27.210 -20.024 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 51 -15.840 31.043 -17.474 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 51 -14.772 31.076 -17.243 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 51 -16.361 30.518 -16.667 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 51 -16.221 32.065 -17.533 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 52 -22.930 27.737 -22.914 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 52 -20.832 23.879 -21.491 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 52 -22.452 23.225 -21.698 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 52 -18.275 23.895 -17.975 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 52 -19.463 28.270 -18.740 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 52 -18.455 28.680 -18.690 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 52 -19.937 28.351 -17.760 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 52 -20.046 28.833 -19.469 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 53 -26.529 24.306 -18.976 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 53 -23.975 20.583 -20.671 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 53 -23.632 19.924 -18.815 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 54 -28.821 18.845 -19.666 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 54 -27.313 16.248 -18.862 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 54 -28.054 15.507 -20.275 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 54 -29.272 17.190 -14.464 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 54 -25.372 14.771 -14.550 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 54 -25.792 13.794 -14.312 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 54 -25.041 15.255 -13.628 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 54 -24.515 14.642 -15.213 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 55 -32.026 14.678 -17.382 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 55 -30.429 10.145 -17.537 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 55 -31.314 10.445 -15.770 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 56 -35.920 11.446 -20.616 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 56 -33.022 11.731 -24.392 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 56 -34.179 10.580 -25.050 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 56 -29.601 9.461 -24.933 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 56 -28.689 12.252 -21.426 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 56 -27.857 12.835 -21.875 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 56 -28.217 11.428 -20.846 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 56 -29.171 12.920 -20.680 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 57 -37.102 7.892 -24.257 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 57 -35.207 5.851 -22.126 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 57 -34.659 4.221 -22.499 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 57 -29.347 4.958 -22.678 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 57 -31.516 8.637 -20.956 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 57 -30.878 9.424 -21.389 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 57 -31.129 8.411 -19.947 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 57 -32.528 9.056 -20.837 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 58 -34.609 1.555 -22.616 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 58 -31.526 0.611 -21.888 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 58 -31.787 -1.128 -21.929 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 58 -28.392 2.482 -19.561 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 58 -32.373 4.784 -19.018 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 58 -31.951 5.792 -19.098 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 58 -32.453 4.524 -17.954 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 58 -33.381 4.795 -19.447 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 -31.767 -2.835 -19.951 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 -28.138 -4.270 -20.213 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 -28.384 -5.895 -19.587 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 -25.014 -2.369 -18.380 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 -28.829 0.050 -17.710 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 -28.415 0.996 -18.047 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 -28.715 -0.038 -16.630 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 -29.883 -0.004 -17.971 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 60 -30.251 -7.019 -15.246 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 60 -25.793 -6.574 -15.428 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 60 -26.134 -5.264 -16.899 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 61 -24.919 -2.781 -14.309 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 61 -27.421 1.390 -13.548 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 61 -26.273 1.168 -11.927 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 62 -22.095 0.967 -15.675 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 62 -20.667 4.110 -14.252 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 62 -20.561 5.660 -15.077 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 62 -26.045 6.905 -13.043 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 62 -22.135 7.214 -10.729 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 62 -22.558 6.850 -9.794 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 62 -22.132 8.305 -10.728 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 62 -21.114 6.850 -10.833 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -18.305 3.068 -18.156 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 -22.529 3.396 -20.612 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 -21.192 4.175 -21.878 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -19.010 -0.162 -21.513 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -22.499 -2.146 -20.100 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -23.247 -0.445 -20.839 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 -24.887 -0.755 -23.470 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 -27.084 2.565 -24.237 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 -28.150 1.845 -25.436 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 -26.980 6.656 -23.962 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 -22.646 5.261 -24.643 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 -22.180 5.848 -23.845 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 -22.592 5.834 -25.577 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 -22.077 4.334 -24.772 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -26.305 2.153 -28.857 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -29.199 3.621 -30.531 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -28.672 5.515 -30.168 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -28.059 6.791 -33.971 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -31.018 9.980 -33.011 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -29.462 11.063 -32.376 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -27.027 12.611 -33.827 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -29.590 16.291 -33.327 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -28.025 16.411 -32.089 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -26.129 16.164 -31.988 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -26.985 19.267 -28.873 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -25.095 19.845 -28.574 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -23.244 22.990 -30.065 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -20.653 24.403 -27.246 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -19.416 23.065 -28.067 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -18.070 25.869 -30.383 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -14.053 25.487 -28.474 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -13.783 24.200 -29.980 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -12.236 25.673 -32.944 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -10.502 21.719 -34.305 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 -12.084 21.701 -35.528 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 -10.781 23.384 -38.458 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 -11.073 19.397 -39.732 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 -12.968 19.828 -40.200 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 -11.407 19.895 -43.641 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 -15.669 18.456 -44.318 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 -15.104 18.067 -45.938 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 -19.085 20.731 -42.065 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 -15.193 23.223 -42.014 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 -15.150 23.387 -40.936 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 -15.686 24.076 -42.488 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 -14.178 23.137 -42.404 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 -14.320 19.403 -49.216 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 -18.673 19.174 -49.726 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 -18.635 21.128 -49.304 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 -18.533 22.164 -53.472 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 -20.240 25.273 -50.129 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 -20.774 26.234 -51.503 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 -18.395 27.394 -47.021 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 -15.313 24.385 -48.578 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 -15.090 23.962 -47.593 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 -14.588 25.179 -48.791 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 -15.196 23.598 -49.330 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 -18.389 27.109 -53.170 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 -19.709 29.466 -55.966 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 -20.962 27.969 -55.532 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 -19.020 31.838 -51.742 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 -22.156 32.707 -48.849 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 -20.756 31.448 -48.175 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 -18.631 32.984 -45.461 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 -16.807 33.026 -43.404 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -18.723 33.309 -42.912 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 -20.950 29.892 -41.370 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 -25.029 30.864 -42.718 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 -24.897 29.192 -43.806 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 -26.745 27.159 -41.344 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 -26.864 24.770 -45.389 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 -28.180 23.929 -44.580 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 -23.271 23.130 -47.226 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 -21.636 25.892 -43.978 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 -20.930 26.438 -44.610 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 -21.109 25.059 -43.500 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 -22.005 26.566 -43.199 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 -28.731 20.963 -42.441 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 -26.121 18.139 -45.102 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 -24.637 18.524 -43.819 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 -24.041 16.866 -40.573 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 -20.769 15.924 -42.528 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 -20.165 16.945 -40.919 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 -20.341 13.236 -37.511 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 -17.246 12.793 -37.666 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 -17.337 14.372 -36.443 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 -16.972 10.092 -34.004 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 -12.417 10.942 -34.762 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 -12.501 12.359 -33.354 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 -11.265 9.921 -30.570 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -7.934 12.587 -29.646 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -9.216 13.710 -28.601 1.00 0.00 H Number of atoms: 2725 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2939 Number of angles built: 5341 Number of dihedrals built: 7975 Number of impropers built: 574 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3703170 Number of van der Waals pairs: 333647 Number of H-bonds built: 37 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 5 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 229310.9778 kcal/mol (228696.9293 without restraints) Performing minimization step: 2. Total energy = 224259.5446 kcal/mol (223672.0215 without restraints) Performing minimization step: 3. Total energy = 219425.5595 kcal/mol (218862.8598 without restraints) Performing minimization step: 4. Total energy = 214795.2049 kcal/mol (214255.7671 without restraints) Performing minimization step: 5. Total energy = 210355.7918 kcal/mol (209838.1804 without restraints) Performing minimization step: 6. Total energy = 206095.6470 kcal/mol (205598.5405 without restraints) Performing minimization step: 7. Total energy = 202004.0151 kcal/mol (201526.1949 without restraints) Performing minimization step: 8. Total energy = 198070.9708 kcal/mol (197611.3115 without restraints) Performing minimization step: 9. Total energy = 194287.3414 kcal/mol (193844.8020 without restraints) Performing minimization step: 10. Total energy = 190644.6369 kcal/mol (190218.2535 without restraints) Performing minimization step: 11. Total energy = 187134.9891 kcal/mol (186723.8674 without restraints) Performing minimization step: 12. Total energy = 183751.0960 kcal/mol (183354.4059 without restraints) Performing minimization step: 13. Total energy = 180486.1726 kcal/mol (180103.1419 without restraints) Performing minimization step: 14. Total energy = 177333.9065 kcal/mol (176963.8167 without restraints) Performing minimization step: 15. Total energy = 174288.4187 kcal/mol (173930.6001 without restraints) Performing minimization step: 16. Total energy = 171344.2272 kcal/mol (170998.0549 without restraints) Performing minimization step: 17. Total energy = 168496.2149 kcal/mol (168161.1053 without restraints) Performing minimization step: 18. Total energy = 165739.6003 kcal/mol (165415.0080 without restraints) Performing minimization step: 19. Total energy = 163069.9110 kcal/mol (162755.3253 without restraints) Performing minimization step: 20. Total energy = 160482.9603 kcal/mol (160177.9031 without restraints) Performing minimization step: 21. Total energy = 157974.8241 kcal/mol (157678.8471 without restraints) Performing minimization step: 22. Total energy = 155541.8227 kcal/mol (155254.5052 without restraints) Performing minimization step: 23. Total energy = 153180.5012 kcal/mol (152901.4481 without restraints) Performing minimization step: 24. Total energy = 150887.6137 kcal/mol (150616.4537 without restraints) Performing minimization step: 25. Total energy = 148660.1082 kcal/mol (148396.4919 without restraints) Performing minimization step: 26. Total energy = 146495.1125 kcal/mol (146238.7111 without restraints) Performing minimization step: 27. Total energy = 144389.9216 kcal/mol (144140.4253 without restraints) Performing minimization step: 28. Total energy = 142341.9863 kcal/mol (142099.1029 without restraints) Performing minimization step: 29. Total energy = 140348.9022 kcal/mol (140112.3561 without restraints) Performing minimization step: 30. Total energy = 138408.4000 kcal/mol (138177.9310 without restraints) Performing minimization step: 31. Total energy = 136518.3359 kcal/mol (136293.6980 without restraints) Performing minimization step: 32. Total energy = 134676.6841 kcal/mol (134457.6451 without restraints) Performing minimization step: 33. Total energy = 132881.5288 kcal/mol (132667.8685 without restraints) Performing minimization step: 34. Total energy = 131131.0565 kcal/mol (130922.5668 without restraints) Performing minimization step: 35. Total energy = 129423.5501 kcal/mol (129220.0337 without restraints) Performing minimization step: 36. Total energy = 127757.3822 kcal/mol (127558.6523 without restraints) Performing minimization step: 37. Total energy = 126131.0101 kcal/mol (125936.8892 without restraints) Performing minimization step: 38. Total energy = 124542.9701 kcal/mol (124353.2899 without restraints) Performing minimization step: 39. Total energy = 122991.8718 kcal/mol (122806.4726 without restraints) Performing minimization step: 40. Total energy = 121476.3957 kcal/mol (121295.1255 without restraints) Performing minimization step: 41. Total energy = 119995.2868 kcal/mol (119818.0013 without restraints) Performing minimization step: 42. Total energy = 118547.3522 kcal/mol (118373.9140 without restraints) Performing minimization step: 43. Total energy = 117131.4563 kcal/mol (116961.7348 without restraints) Performing minimization step: 44. Total energy = 115746.5186 kcal/mol (115580.3894 without restraints) Performing minimization step: 45. Total energy = 114391.5089 kcal/mol (114228.8530 without restraints) Performing minimization step: 46. Total energy = 113065.4458 kcal/mol (112906.1503 without restraints) Performing minimization step: 47. Total energy = 111767.3934 kcal/mol (111611.3504 without restraints) Performing minimization step: 48. Total energy = 110496.4589 kcal/mol (110343.5655 without restraints) Performing minimization step: 49. Total energy = 109251.7893 kcal/mol (109101.9472 without restraints) Performing minimization step: 50. Total energy = 108032.5706 kcal/mol (107885.6858 without restraints) Performing minimization step: 51. Total energy = 106838.0244 kcal/mol (106694.0071 without restraints) Performing minimization step: 52. Total energy = 105667.4067 kcal/mol (105526.1710 without restraints) Performing minimization step: 53. Total energy = 104520.0055 kcal/mol (104381.4692 without restraints) Performing minimization step: 54. Total energy = 103395.1394 kcal/mol (103259.2238 without restraints) Performing minimization step: 55. Total energy = 102292.1561 kcal/mol (102158.7859 without restraints) Performing minimization step: 56. Total energy = 101210.4300 kcal/mol (101079.5329 without restraints) Performing minimization step: 57. Total energy = 100149.3619 kcal/mol (100020.8687 without restraints) Performing minimization step: 58. Total energy = 99108.3770 kcal/mol (98982.2212 without restraints) Performing minimization step: 59. Total energy = 98086.9237 kcal/mol (97963.0415 without restraints) Performing minimization step: 60. Total energy = 97084.4722 kcal/mol (96962.8024 without restraints) Performing minimization step: 61. Total energy = 96100.5143 kcal/mol (95980.9981 without restraints) Performing minimization step: 62. Total energy = 95134.5610 kcal/mol (95017.1418 without restraints) Performing minimization step: 63. Total energy = 94186.1422 kcal/mol (94070.7655 without restraints) Performing minimization step: 64. Total energy = 93254.8060 kcal/mol (93141.4196 without restraints) Performing minimization step: 65. Total energy = 92340.1173 kcal/mol (92228.6707 without restraints) Performing minimization step: 66. Total energy = 91441.6567 kcal/mol (91332.1016 without restraints) Performing minimization step: 67. Total energy = 90559.0220 kcal/mol (90451.3115 without restraints) Performing minimization step: 68. Total energy = 89691.8236 kcal/mol (89585.9127 without restraints) Performing minimization step: 69. Total energy = 88839.6866 kcal/mol (88735.5318 without restraints) Performing minimization step: 70. Total energy = 88002.2494 kcal/mol (87899.8088 without restraints) Performing minimization step: 71. Total energy = 87179.1630 kcal/mol (87078.3961 without restraints) Performing minimization step: 72. Total energy = 86370.0904 kcal/mol (86270.9582 without restraints) Performing minimization step: 73. Total energy = 85574.7065 kcal/mol (85477.1712 without restraints) Performing minimization step: 74. Total energy = 84792.6964 kcal/mol (84696.7216 without restraints) Performing minimization step: 75. Total energy = 84023.7562 kcal/mol (83929.3065 without restraints) Performing minimization step: 76. Total energy = 83267.5918 kcal/mol (83174.6330 without restraints) Performing minimization step: 77. Total energy = 82523.9187 kcal/mol (82432.4179 without restraints) Performing minimization step: 78. Total energy = 81792.4617 kcal/mol (81702.3868 without restraints) Performing minimization step: 79. Total energy = 81072.9540 kcal/mol (80984.2742 without restraints) Performing minimization step: 80. Total energy = 80365.1376 kcal/mol (80277.8228 without restraints) Performing minimization step: 81. Total energy = 79668.7617 kcal/mol (79582.7827 without restraints) Performing minimization step: 82. Total energy = 78983.5835 kcal/mol (78898.9122 without restraints) Performing minimization step: 83. Total energy = 78309.3680 kcal/mol (78225.9771 without restraints) Performing minimization step: 84. Total energy = 77645.8868 kcal/mol (77563.7496 without restraints) Performing minimization step: 85. Total energy = 76992.9180 kcal/mol (76912.0088 without restraints) Performing minimization step: 86. Total energy = 76350.2462 kcal/mol (76270.5400 without restraints) Performing minimization step: 87. Total energy = 75717.6629 kcal/mol (75639.1354 without restraints) Performing minimization step: 88. Total energy = 75094.9645 kcal/mol (75017.5919 without restraints) Performing minimization step: 89. Total energy = 74481.9535 kcal/mol (74405.7129 without restraints) Performing minimization step: 90. Total energy = 73878.4379 kcal/mol (73803.3071 without restraints) Performing minimization step: 91. Total energy = 73284.2311 kcal/mol (73210.1882 without restraints) Performing minimization step: 92. Total energy = 72699.1511 kcal/mol (72626.1749 without restraints) Performing minimization step: 93. Total energy = 72123.0216 kcal/mol (72051.0916 without restraints) Performing minimization step: 94. Total energy = 71555.6700 kcal/mol (71484.7661 without restraints) Performing minimization step: 95. Total energy = 70996.9284 kcal/mol (70927.0310 without restraints) Performing minimization step: 96. Total energy = 70446.6336 kcal/mol (70377.7239 without restraints) Performing minimization step: 97. Total energy = 69904.6266 kcal/mol (69836.6858 without restraints) Performing minimization step: 98. Total energy = 69370.7516 kcal/mol (69303.7617 without restraints) Performing minimization step: 99. Total energy = 68844.8579 kcal/mol (68778.8013 without restraints) Performing minimization step: 100. Total energy = 68326.7972 kcal/mol (68261.6566 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 67816.4260 kcal/mol (67752.1846 without restraints) Performing minimization step: 102. Total energy = 67313.6036 kcal/mol (67250.2451 without restraints) Performing minimization step: 103. Total energy = 66818.1929 kcal/mol (66755.7013 without restraints) Performing minimization step: 104. Total energy = 66330.0599 kcal/mol (66268.4195 without restraints) Performing minimization step: 105. Total energy = 65849.0736 kcal/mol (65788.2692 without restraints) Performing minimization step: 106. Total energy = 65375.1065 kcal/mol (65315.1232 without restraints) Performing minimization step: 107. Total energy = 64908.0339 kcal/mol (64848.8571 without restraints) Performing minimization step: 108. Total energy = 64447.7335 kcal/mol (64389.3490 without restraints) Performing minimization step: 109. Total energy = 63994.0862 kcal/mol (63936.4800 without restraints) Performing minimization step: 110. Total energy = 63546.9753 kcal/mol (63490.1339 without restraints) Performing minimization step: 111. Total energy = 63106.2869 kcal/mol (63050.1969 without restraints) Performing minimization step: 112. Total energy = 62671.9092 kcal/mol (62616.5577 without restraints) Performing minimization step: 113. Total energy = 62243.7332 kcal/mol (62189.1073 without restraints) Performing minimization step: 114. Total energy = 61821.6521 kcal/mol (61767.7395 without restraints) Performing minimization step: 115. Total energy = 61405.5615 kcal/mol (61352.3498 without restraints) Performing minimization step: 116. Total energy = 60995.3590 kcal/mol (60942.8364 without restraints) Performing minimization step: 117. Total energy = 60590.9445 kcal/mol (60539.0993 without restraints) Performing minimization step: 118. Total energy = 60192.2198 kcal/mol (60141.0405 without restraints) Performing minimization step: 119. Total energy = 59799.0889 kcal/mol (59748.5643 without restraints) Performing minimization step: 120. Total energy = 59411.4581 kcal/mol (59361.5772 without restraints) Performing minimization step: 121. Total energy = 59029.2346 kcal/mol (58979.9866 without restraints) Performing minimization step: 122. Total energy = 58652.3283 kcal/mol (58603.7027 without restraints) Performing minimization step: 123. Total energy = 58280.6507 kcal/mol (58232.6371 without restraints) Performing minimization step: 124. Total energy = 57914.1149 kcal/mol (57866.7031 without restraints) Performing minimization step: 125. Total energy = 57552.6360 kcal/mol (57505.8163 without restraints) Performing minimization step: 126. Total energy = 57196.1307 kcal/mol (57149.8932 without restraints) Performing minimization step: 127. Total energy = 56844.5171 kcal/mol (56798.8522 without restraints) Performing minimization step: 128. Total energy = 56497.7152 kcal/mol (56452.6137 without restraints) Performing minimization step: 129. Total energy = 56155.6462 kcal/mol (56111.0988 without restraints) Performing minimization step: 130. Total energy = 55818.2328 kcal/mol (55774.2304 without restraints) Performing minimization step: 131. Total energy = 55485.3994 kcal/mol (55441.9332 without restraints) Performing minimization step: 132. Total energy = 55157.0718 kcal/mol (55114.1331 without restraints) Performing minimization step: 133. Total energy = 54833.1770 kcal/mol (54790.7573 without restraints) Performing minimization step: 134. Total energy = 54513.6436 kcal/mol (54471.7346 without restraints) Performing minimization step: 135. Total energy = 54198.4013 kcal/mol (54156.9948 without restraints) Performing minimization step: 136. Total energy = 53887.3814 kcal/mol (53846.4692 without restraints) Performing minimization step: 137. Total energy = 53580.5161 kcal/mol (53540.0904 without restraints) Performing minimization step: 138. Total energy = 53277.7387 kcal/mol (53237.7916 without restraints) Performing minimization step: 139. Total energy = 52978.9846 kcal/mol (52939.5087 without restraints) Performing minimization step: 140. Total energy = 52684.1897 kcal/mol (52645.1774 without restraints) Performing minimization step: 141. Total energy = 52393.2909 kcal/mol (52354.7348 without restraints) Performing minimization step: 142. Total energy = 52106.2267 kcal/mol (52068.1196 without restraints) Performing minimization step: 143. Total energy = 51822.9363 kcal/mol (51785.2712 without restraints) Performing minimization step: 144. Total energy = 51543.3598 kcal/mol (51506.1296 without restraints) Performing minimization step: 145. Total energy = 51267.4391 kcal/mol (51230.6370 without restraints) Performing minimization step: 146. Total energy = 50995.1166 kcal/mol (50958.7359 without restraints) Performing minimization step: 147. Total energy = 50726.3355 kcal/mol (50690.3695 without restraints) Performing minimization step: 148. Total energy = 50461.0409 kcal/mol (50425.4834 without restraints) Performing minimization step: 149. Total energy = 50199.1781 kcal/mol (50164.0225 without restraints) Performing minimization step: 150. Total energy = 49940.6934 kcal/mol (49905.9334 without restraints) Performing minimization step: 151. Total energy = 49685.5341 kcal/mol (49651.1636 without restraints) Performing minimization step: 152. Total energy = 49433.6485 kcal/mol (49399.6614 without restraints) Performing minimization step: 153. Total energy = 49184.9856 kcal/mol (49151.3759 without restraints) Performing minimization step: 154. Total energy = 48939.4955 kcal/mol (48906.2575 without restraints) Performing minimization step: 155. Total energy = 48697.1291 kcal/mol (48664.2569 without restraints) Performing minimization step: 156. Total energy = 48457.8380 kcal/mol (48425.3260 without restraints) Performing minimization step: 157. Total energy = 48221.5746 kcal/mol (48189.4173 without restraints) Performing minimization step: 158. Total energy = 47988.2923 kcal/mol (47956.4842 without restraints) Performing minimization step: 159. Total energy = 47757.9452 kcal/mol (47726.4809 without restraints) Performing minimization step: 160. Total energy = 47530.4881 kcal/mol (47499.3623 without restraints) Performing minimization step: 161. Total energy = 47305.8767 kcal/mol (47275.0842 without restraints) Performing minimization step: 162. Total energy = 47084.0670 kcal/mol (47053.6028 without restraints) Performing minimization step: 163. Total energy = 46865.0162 kcal/mol (46834.8751 without restraints) Performing minimization step: 164. Total energy = 46648.6823 kcal/mol (46618.8595 without restraints) Performing minimization step: 165. Total energy = 46435.0241 kcal/mol (46405.5146 without restraints) Performing minimization step: 166. Total energy = 46223.9994 kcal/mol (46194.7986 without restraints) Performing minimization step: 167. Total energy = 46015.5696 kcal/mol (45986.6728 without restraints) Performing minimization step: 168. Total energy = 45809.6941 kcal/mol (45781.0964 without restraints) Performing minimization step: 169. Total energy = 45606.3343 kcal/mol (45578.0314 without restraints) Performing minimization step: 170. Total energy = 45405.4520 kcal/mol (45377.4392 without restraints) Performing minimization step: 171. Total energy = 45207.0096 kcal/mol (45179.2827 without restraints) Performing minimization step: 172. Total energy = 45010.9705 kcal/mol (44983.5252 without restraints) Performing minimization step: 173. Total energy = 44817.2977 kcal/mol (44790.1297 without restraints) Performing minimization step: 174. Total energy = 44625.9559 kcal/mol (44599.0610 without restraints) Performing minimization step: 175. Total energy = 44436.9094 kcal/mol (44410.2833 without restraints) Performing minimization step: 176. Total energy = 44250.1235 kcal/mol (44223.7624 without restraints) Performing minimization step: 177. Total energy = 44065.5642 kcal/mol (44039.4639 without restraints) Performing minimization step: 178. Total energy = 43883.1988 kcal/mol (43857.3554 without restraints) Performing minimization step: 179. Total energy = 43702.9929 kcal/mol (43677.4026 without restraints) Performing minimization step: 180. Total energy = 43524.9147 kcal/mol (43499.5738 without restraints) Performing minimization step: 181. Total energy = 43348.9323 kcal/mol (43323.8369 without restraints) Performing minimization step: 182. Total energy = 43175.0138 kcal/mol (43150.1602 without restraints) Performing minimization step: 183. Total energy = 43003.1287 kcal/mol (42978.5134 without restraints) Performing minimization step: 184. Total energy = 42833.2462 kcal/mol (42808.8656 without restraints) Performing minimization step: 185. Total energy = 42665.3369 kcal/mol (42641.1876 without restraints) Performing minimization step: 186. Total energy = 42499.3711 kcal/mol (42475.4494 without restraints) Performing minimization step: 187. Total energy = 42335.3195 kcal/mol (42311.6221 without restraints) Performing minimization step: 188. Total energy = 42173.1537 kcal/mol (42149.6773 without restraints) Performing minimization step: 189. Total energy = 42012.8456 kcal/mol (41989.5868 without restraints) Performing minimization step: 190. Total energy = 41854.3677 kcal/mol (41831.3234 without restraints) Performing minimization step: 191. Total energy = 41697.6927 kcal/mol (41674.8597 without restraints) Performing minimization step: 192. Total energy = 41542.7935 kcal/mol (41520.1686 without restraints) Performing minimization step: 193. Total energy = 41389.6439 kcal/mol (41367.2241 without restraints) Performing minimization step: 194. Total energy = 41238.2179 kcal/mol (41216.0001 without restraints) Performing minimization step: 195. Total energy = 41088.4903 kcal/mol (41066.4715 without restraints) Performing minimization step: 196. Total energy = 40940.4359 kcal/mol (40918.6132 without restraints) Performing minimization step: 197. Total energy = 40794.0297 kcal/mol (40772.4003 without restraints) Performing minimization step: 198. Total energy = 40649.2478 kcal/mol (40627.8086 without restraints) Performing minimization step: 199. Total energy = 40506.0660 kcal/mol (40484.8144 without restraints) Performing minimization step: 200. Total energy = 40364.4604 kcal/mol (40343.3935 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 40224.4082 kcal/mol (40203.5234 without restraints) Performing minimization step: 202. Total energy = 40085.8859 kcal/mol (40065.1805 without restraints) Performing minimization step: 203. Total energy = 39948.8722 kcal/mol (39928.3436 without restraints) Performing minimization step: 204. Total energy = 39813.3445 kcal/mol (39792.9899 without restraints) Performing minimization step: 205. Total energy = 39679.2810 kcal/mol (39659.0981 without restraints) Performing minimization step: 206. Total energy = 39546.6598 kcal/mol (39526.6460 without restraints) Performing minimization step: 207. Total energy = 39415.4603 kcal/mol (39395.6131 without restraints) Performing minimization step: 208. Total energy = 39285.6617 kcal/mol (39265.9787 without restraints) Performing minimization step: 209. Total energy = 39157.2435 kcal/mol (39137.7223 without restraints) Performing minimization step: 210. Total energy = 39030.1854 kcal/mol (39010.8238 without restraints) Performing minimization step: 211. Total energy = 38904.4680 kcal/mol (38885.2634 without restraints) Performing minimization step: 212. Total energy = 38780.0716 kcal/mol (38761.0219 without restraints) Performing minimization step: 213. Total energy = 38656.9768 kcal/mol (38638.0798 without restraints) Performing minimization step: 214. Total energy = 38535.1651 kcal/mol (38516.4185 without restraints) Performing minimization step: 215. Total energy = 38414.6175 kcal/mol (38396.0189 without restraints) Performing minimization step: 216. Total energy = 38295.3157 kcal/mol (38276.8633 without restraints) Performing minimization step: 217. Total energy = 38177.2421 kcal/mol (38158.9337 without restraints) Performing minimization step: 218. Total energy = 38060.3789 kcal/mol (38042.2124 without restraints) Performing minimization step: 219. Total energy = 37944.7090 kcal/mol (37926.6824 without restraints) Performing minimization step: 220. Total energy = 37830.2142 kcal/mol (37812.3253 without restraints) Performing minimization step: 221. Total energy = 37716.8780 kcal/mol (37699.1251 without restraints) Performing minimization step: 222. Total energy = 37604.6841 kcal/mol (37587.0651 without restraints) Performing minimization step: 223. Total energy = 37493.6158 kcal/mol (37476.1288 without restraints) Performing minimization step: 224. Total energy = 37383.6570 kcal/mol (37366.3001 without restraints) Performing minimization step: 225. Total energy = 37274.7922 kcal/mol (37257.5635 without restraints) Performing minimization step: 226. Total energy = 37167.0050 kcal/mol (37149.9028 without restraints) Performing minimization step: 227. Total energy = 37060.2807 kcal/mol (37043.3031 without restraints) Performing minimization step: 228. Total energy = 36954.6042 kcal/mol (36937.7495 without restraints) Performing minimization step: 229. Total energy = 36849.9602 kcal/mol (36833.2268 without restraints) Performing minimization step: 230. Total energy = 36746.3339 kcal/mol (36729.7196 without restraints) Performing minimization step: 231. Total energy = 36643.7111 kcal/mol (36627.2145 without restraints) Performing minimization step: 232. Total energy = 36542.0777 kcal/mol (36525.6972 without restraints) Performing minimization step: 233. Total energy = 36441.4194 kcal/mol (36425.1533 without restraints) Performing minimization step: 234. Total energy = 36341.7225 kcal/mol (36325.5692 without restraints) Performing minimization step: 235. Total energy = 36242.9739 kcal/mol (36226.9317 without restraints) Performing minimization step: 236. Total energy = 36145.1593 kcal/mol (36129.2268 without restraints) Performing minimization step: 237. Total energy = 36048.2662 kcal/mol (36032.4417 without restraints) Performing minimization step: 238. Total energy = 35952.2813 kcal/mol (35936.5633 without restraints) Performing minimization step: 239. Total energy = 35857.1921 kcal/mol (35841.5791 without restraints) Performing minimization step: 240. Total energy = 35762.9860 kcal/mol (35747.4768 without restraints) Performing minimization step: 241. Total energy = 35669.6505 kcal/mol (35654.2434 without restraints) Performing minimization step: 242. Total energy = 35577.1738 kcal/mol (35561.8675 without restraints) Performing minimization step: 243. Total energy = 35485.5434 kcal/mol (35470.3364 without restraints) Performing minimization step: 244. Total energy = 35394.7477 kcal/mol (35379.6386 without restraints) Performing minimization step: 245. Total energy = 35304.7750 kcal/mol (35289.7625 without restraints) Performing minimization step: 246. Total energy = 35215.6145 kcal/mol (35200.6972 without restraints) Performing minimization step: 247. Total energy = 35127.2541 kcal/mol (35112.4307 without restraints) Performing minimization step: 248. Total energy = 35039.6829 kcal/mol (35024.9522 without restraints) Performing minimization step: 249. Total energy = 34952.8902 kcal/mol (34938.2508 without restraints) Performing minimization step: 250. Total energy = 34866.8649 kcal/mol (34852.3157 without restraints) Performing minimization step: 251. Total energy = 34781.5972 kcal/mol (34767.1367 without restraints) Performing minimization step: 252. Total energy = 34697.0757 kcal/mol (34682.7029 without restraints) Performing minimization step: 253. Total energy = 34613.2907 kcal/mol (34599.0043 without restraints) Performing minimization step: 254. Total energy = 34530.2320 kcal/mol (34516.0309 without restraints) Performing minimization step: 255. Total energy = 34447.8898 kcal/mol (34433.7728 without restraints) Performing minimization step: 256. Total energy = 34366.2540 kcal/mol (34352.2199 without restraints) Performing minimization step: 257. Total energy = 34285.3149 kcal/mol (34271.3626 without restraints) Performing minimization step: 258. Total energy = 34205.0631 kcal/mol (34191.1915 without restraints) Performing minimization step: 259. Total energy = 34125.4898 kcal/mol (34111.6978 without restraints) Performing minimization step: 260. Total energy = 34046.5848 kcal/mol (34032.8714 without restraints) Performing minimization step: 261. Total energy = 33968.3401 kcal/mol (33954.7042 without restraints) Performing minimization step: 262. Total energy = 33890.7456 kcal/mol (33877.1860 without restraints) Performing minimization step: 263. Total energy = 33813.7935 kcal/mol (33800.3094 without restraints) Performing minimization step: 264. Total energy = 33737.4745 kcal/mol (33724.0645 without restraints) Performing minimization step: 265. Total energy = 33661.7801 kcal/mol (33648.4437 without restraints) Performing minimization step: 266. Total energy = 33586.7028 kcal/mol (33573.4388 without restraints) Performing minimization step: 267. Total energy = 33512.2334 kcal/mol (33499.0408 without restraints) Performing minimization step: 268. Total energy = 33438.3634 kcal/mol (33425.2412 without restraints) Performing minimization step: 269. Total energy = 33365.0858 kcal/mol (33352.0333 without restraints) Performing minimization step: 270. Total energy = 33292.3921 kcal/mol (33279.4081 without restraints) Performing minimization step: 271. Total energy = 33220.2752 kcal/mol (33207.3589 without restraints) Performing minimization step: 272. Total energy = 33148.7268 kcal/mol (33135.8773 without restraints) Performing minimization step: 273. Total energy = 33077.7395 kcal/mol (33064.9561 without restraints) Performing minimization step: 274. Total energy = 33007.3059 kcal/mol (32994.5874 without restraints) Performing minimization step: 275. Total energy = 32937.4183 kcal/mol (32924.7640 without restraints) Performing minimization step: 276. Total energy = 32868.0702 kcal/mol (32855.4794 without restraints) Performing minimization step: 277. Total energy = 32799.2538 kcal/mol (32786.7254 without restraints) Performing minimization step: 278. Total energy = 32730.9629 kcal/mol (32718.4962 without restraints) Performing minimization step: 279. Total energy = 32663.1899 kcal/mol (32650.7841 without restraints) Performing minimization step: 280. Total energy = 32595.9284 kcal/mol (32583.5827 without restraints) Performing minimization step: 281. Total energy = 32529.1714 kcal/mol (32516.8850 without restraints) Performing minimization step: 282. Total energy = 32462.9123 kcal/mol (32450.6845 without restraints) Performing minimization step: 283. Total energy = 32397.1447 kcal/mol (32384.9746 without restraints) Performing minimization step: 284. Total energy = 32331.8624 kcal/mol (32319.7494 without restraints) Performing minimization step: 285. Total energy = 32267.0597 kcal/mol (32255.0030 without restraints) Performing minimization step: 286. Total energy = 32202.7293 kcal/mol (32190.7282 without restraints) Performing minimization step: 287. Total energy = 32138.8655 kcal/mol (32126.9193 without restraints) Performing minimization step: 288. Total energy = 32075.4625 kcal/mol (32063.5705 without restraints) Performing minimization step: 289. Total energy = 32012.5143 kcal/mol (32000.6757 without restraints) Performing minimization step: 290. Total energy = 31950.0145 kcal/mol (31938.2288 without restraints) Performing minimization step: 291. Total energy = 31887.9581 kcal/mol (31876.2244 without restraints) Performing minimization step: 292. Total energy = 31826.3390 kcal/mol (31814.6568 without restraints) Performing minimization step: 293. Total energy = 31765.1523 kcal/mol (31753.5209 without restraints) Performing minimization step: 294. Total energy = 31704.3917 kcal/mol (31692.8105 without restraints) Performing minimization step: 295. Total energy = 31644.0516 kcal/mol (31632.5199 without restraints) Performing minimization step: 296. Total energy = 31584.1275 kcal/mol (31572.6447 without restraints) Performing minimization step: 297. Total energy = 31524.6134 kcal/mol (31513.1789 without restraints) Performing minimization step: 298. Total energy = 31465.5050 kcal/mol (31454.1182 without restraints) Performing minimization step: 299. Total energy = 31406.7968 kcal/mol (31395.4572 without restraints) Performing minimization step: 300. Total energy = 31348.4841 kcal/mol (31337.1911 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 31290.5617 kcal/mol (31279.3148 without restraints) Performing minimization step: 302. Total energy = 31233.0246 kcal/mol (31221.8227 without restraints) Performing minimization step: 303. Total energy = 31175.8675 kcal/mol (31164.7103 without restraints) Performing minimization step: 304. Total energy = 31119.0866 kcal/mol (31107.9737 without restraints) Performing minimization step: 305. Total energy = 31062.6766 kcal/mol (31051.6074 without restraints) Performing minimization step: 306. Total energy = 31006.6326 kcal/mol (30995.6066 without restraints) Performing minimization step: 307. Total energy = 30950.9511 kcal/mol (30939.9678 without restraints) Performing minimization step: 308. Total energy = 30895.6271 kcal/mol (30884.6859 without restraints) Performing minimization step: 309. Total energy = 30840.6569 kcal/mol (30829.7573 without restraints) Performing minimization step: 310. Total energy = 30786.0351 kcal/mol (30775.1766 without restraints) Performing minimization step: 311. Total energy = 30731.7577 kcal/mol (30720.9398 without restraints) Performing minimization step: 312. Total energy = 30677.8208 kcal/mol (30667.0430 without restraints) Performing minimization step: 313. Total energy = 30624.2203 kcal/mol (30613.4821 without restraints) Performing minimization step: 314. Total energy = 30570.9519 kcal/mol (30560.2528 without restraints) Performing minimization step: 315. Total energy = 30518.0117 kcal/mol (30507.3514 without restraints) Performing minimization step: 316. Total energy = 30465.3956 kcal/mol (30454.7734 without restraints) Performing minimization step: 317. Total energy = 30413.0993 kcal/mol (30402.5148 without restraints) Performing minimization step: 318. Total energy = 30361.1202 kcal/mol (30350.5734 without restraints) Performing minimization step: 319. Total energy = 30309.4537 kcal/mol (30298.9435 without restraints) Performing minimization step: 320. Total energy = 30258.0958 kcal/mol (30247.6220 without restraints) Performing minimization step: 321. Total energy = 30207.0435 kcal/mol (30196.6058 without restraints) Performing minimization step: 322. Total energy = 30156.2932 kcal/mol (30145.8911 without restraints) Performing minimization step: 323. Total energy = 30105.8415 kcal/mol (30095.4746 without restraints) Performing minimization step: 324. Total energy = 30055.6840 kcal/mol (30045.3518 without restraints) Performing minimization step: 325. Total energy = 30005.8172 kcal/mol (29995.5193 without restraints) Performing minimization step: 326. Total energy = 29956.2384 kcal/mol (29945.9745 without restraints) Performing minimization step: 327. Total energy = 29906.9435 kcal/mol (29896.7132 without restraints) Performing minimization step: 328. Total energy = 29857.9299 kcal/mol (29847.7327 without restraints) Performing minimization step: 329. Total energy = 29809.1940 kcal/mol (29799.0296 without restraints) Performing minimization step: 330. Total energy = 29760.7325 kcal/mol (29750.6005 without restraints) Performing minimization step: 331. Total energy = 29712.5424 kcal/mol (29702.4426 without restraints) Performing minimization step: 332. Total energy = 29664.6208 kcal/mol (29654.5525 without restraints) Performing minimization step: 333. Total energy = 29616.9643 kcal/mol (29606.9274 without restraints) Performing minimization step: 334. Total energy = 29569.5702 kcal/mol (29559.5641 without restraints) Performing minimization step: 335. Total energy = 29522.4348 kcal/mol (29512.4595 without restraints) Performing minimization step: 336. Total energy = 29475.5557 kcal/mol (29465.6106 without restraints) Performing minimization step: 337. Total energy = 29428.9294 kcal/mol (29419.0143 without restraints) Performing minimization step: 338. Total energy = 29382.5541 kcal/mol (29372.6685 without restraints) Performing minimization step: 339. Total energy = 29336.4265 kcal/mol (29326.5702 without restraints) Performing minimization step: 340. Total energy = 29290.5429 kcal/mol (29280.7154 without restraints) Performing minimization step: 341. Total energy = 29244.9013 kcal/mol (29235.1025 without restraints) Performing minimization step: 342. Total energy = 29199.5001 kcal/mol (29189.7297 without restraints) Performing minimization step: 343. Total energy = 29154.3353 kcal/mol (29144.5929 without restraints) Performing minimization step: 344. Total energy = 29109.4044 kcal/mol (29099.6897 without restraints) Performing minimization step: 345. Total energy = 29064.7051 kcal/mol (29055.0177 without restraints) Performing minimization step: 346. Total energy = 29020.2349 kcal/mol (29010.5746 without restraints) Performing minimization step: 347. Total energy = 28975.9907 kcal/mol (28966.3571 without restraints) Performing minimization step: 348. Total energy = 28931.9708 kcal/mol (28922.3638 without restraints) Performing minimization step: 349. Total energy = 28888.1721 kcal/mol (28878.5912 without restraints) Performing minimization step: 350. Total energy = 28844.5926 kcal/mol (28835.0377 without restraints) Performing minimization step: 351. Total energy = 28801.2295 kcal/mol (28791.7003 without restraints) Performing minimization step: 352. Total energy = 28758.0812 kcal/mol (28748.5772 without restraints) Performing minimization step: 353. Total energy = 28715.1448 kcal/mol (28705.6660 without restraints) Performing minimization step: 354. Total energy = 28672.4184 kcal/mol (28662.9645 without restraints) Performing minimization step: 355. Total energy = 28629.8995 kcal/mol (28620.4703 without restraints) Performing minimization step: 356. Total energy = 28587.5857 kcal/mol (28578.1806 without restraints) Performing minimization step: 357. Total energy = 28545.4750 kcal/mol (28536.0941 without restraints) Performing minimization step: 358. Total energy = 28503.5660 kcal/mol (28494.2090 without restraints) Performing minimization step: 359. Total energy = 28461.8559 kcal/mol (28452.5224 without restraints) Performing minimization step: 360. Total energy = 28420.3425 kcal/mol (28411.0324 without restraints) Performing minimization step: 361. Total energy = 28379.0234 kcal/mol (28369.7363 without restraints) Performing minimization step: 362. Total energy = 28337.8973 kcal/mol (28328.6331 without restraints) Performing minimization step: 363. Total energy = 28296.9620 kcal/mol (28287.7206 without restraints) Performing minimization step: 364. Total energy = 28256.2156 kcal/mol (28246.9964 without restraints) Performing minimization step: 365. Total energy = 28215.6560 kcal/mol (28206.4589 without restraints) Performing minimization step: 366. Total energy = 28175.2815 kcal/mol (28166.1069 without restraints) Performing minimization step: 367. Total energy = 28135.0900 kcal/mol (28125.9367 without restraints) Performing minimization step: 368. Total energy = 28095.0794 kcal/mol (28085.9476 without restraints) Performing minimization step: 369. Total energy = 28055.2478 kcal/mol (28046.1373 without restraints) Performing minimization step: 370. Total energy = 28015.5941 kcal/mol (28006.5047 without restraints) Performing minimization step: 371. Total energy = 27976.1161 kcal/mol (27967.0476 without restraints) Performing minimization step: 372. Total energy = 27936.8124 kcal/mol (27927.7645 without restraints) Performing minimization step: 373. Total energy = 27897.6806 kcal/mol (27888.6532 without restraints) Performing minimization step: 374. Total energy = 27858.7192 kcal/mol (27849.7121 without restraints) Performing minimization step: 375. Total energy = 27819.9268 kcal/mol (27810.9397 without restraints) Performing minimization step: 376. Total energy = 27781.3018 kcal/mol (27772.3346 without restraints) Performing minimization step: 377. Total energy = 27742.8418 kcal/mol (27733.8943 without restraints) Performing minimization step: 378. Total energy = 27704.5460 kcal/mol (27695.6181 without restraints) Performing minimization step: 379. Total energy = 27666.4128 kcal/mol (27657.5041 without restraints) Performing minimization step: 380. Total energy = 27628.4406 kcal/mol (27619.5512 without restraints) Performing minimization step: 381. Total energy = 27590.6278 kcal/mol (27581.7572 without restraints) Performing minimization step: 382. Total energy = 27552.9721 kcal/mol (27544.1203 without restraints) Performing minimization step: 383. Total energy = 27515.4731 kcal/mol (27506.6399 without restraints) Performing minimization step: 384. Total energy = 27478.1281 kcal/mol (27469.3134 without restraints) Performing minimization step: 385. Total energy = 27440.9370 kcal/mol (27432.1405 without restraints) Performing minimization step: 386. Total energy = 27403.8977 kcal/mol (27395.1192 without restraints) Performing minimization step: 387. Total energy = 27367.0083 kcal/mol (27358.2478 without restraints) Performing minimization step: 388. Total energy = 27330.2682 kcal/mol (27321.5254 without restraints) Performing minimization step: 389. Total energy = 27293.6754 kcal/mol (27284.9502 without restraints) Performing minimization step: 390. Total energy = 27257.2290 kcal/mol (27248.5214 without restraints) Performing minimization step: 391. Total energy = 27220.9282 kcal/mol (27212.2377 without restraints) Performing minimization step: 392. Total energy = 27184.7706 kcal/mol (27176.0972 without restraints) Performing minimization step: 393. Total energy = 27148.7553 kcal/mol (27140.0990 without restraints) Performing minimization step: 394. Total energy = 27112.8803 kcal/mol (27104.2407 without restraints) Performing minimization step: 395. Total energy = 27077.1449 kcal/mol (27068.5219 without restraints) Performing minimization step: 396. Total energy = 27041.5483 kcal/mol (27032.9419 without restraints) Performing minimization step: 397. Total energy = 27006.0886 kcal/mol (26997.4984 without restraints) Performing minimization step: 398. Total energy = 26970.7652 kcal/mol (26962.1916 without restraints) Performing minimization step: 399. Total energy = 26935.5753 kcal/mol (26927.0177 without restraints) Performing minimization step: 400. Total energy = 26900.5197 kcal/mol (26891.9779 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 26865.5966 kcal/mol (26857.0707 without restraints) Performing minimization step: 402. Total energy = 26830.8053 kcal/mol (26822.2951 without restraints) Performing minimization step: 403. Total energy = 26796.1437 kcal/mol (26787.6493 without restraints) Performing minimization step: 404. Total energy = 26761.6114 kcal/mol (26753.1322 without restraints) Performing minimization step: 405. Total energy = 26727.2066 kcal/mol (26718.7428 without restraints) Performing minimization step: 406. Total energy = 26692.9287 kcal/mol (26684.4799 without restraints) Performing minimization step: 407. Total energy = 26658.7765 kcal/mol (26650.3429 without restraints) Performing minimization step: 408. Total energy = 26624.7493 kcal/mol (26616.3305 without restraints) Performing minimization step: 409. Total energy = 26590.8451 kcal/mol (26582.4411 without restraints) Performing minimization step: 410. Total energy = 26557.0632 kcal/mol (26548.6739 without restraints) Performing minimization step: 411. Total energy = 26523.4032 kcal/mol (26515.0284 without restraints) Performing minimization step: 412. Total energy = 26489.8636 kcal/mol (26481.5032 without restraints) Performing minimization step: 413. Total energy = 26456.4428 kcal/mol (26448.0966 without restraints) Performing minimization step: 414. Total energy = 26423.1408 kcal/mol (26414.8090 without restraints) Performing minimization step: 415. Total energy = 26389.9556 kcal/mol (26381.6378 without restraints) Performing minimization step: 416. Total energy = 26356.8879 kcal/mol (26348.5843 without restraints) Performing minimization step: 417. Total energy = 26323.9362 kcal/mol (26315.6464 without restraints) Performing minimization step: 418. Total energy = 26291.0991 kcal/mol (26282.8229 without restraints) Performing minimization step: 419. Total energy = 26258.3752 kcal/mol (26250.1127 without restraints) Performing minimization step: 420. Total energy = 26225.7641 kcal/mol (26217.5150 without restraints) Performing minimization step: 421. Total energy = 26193.2650 kcal/mol (26185.0296 without restraints) Performing minimization step: 422. Total energy = 26160.8775 kcal/mol (26152.6553 without restraints) Performing minimization step: 423. Total energy = 26128.5992 kcal/mol (26120.3903 without restraints) Performing minimization step: 424. Total energy = 26096.4307 kcal/mol (26088.2348 without restraints) Performing minimization step: 425. Total energy = 26064.3707 kcal/mol (26056.1880 without restraints) Performing minimization step: 426. Total energy = 26032.4184 kcal/mol (26024.2485 without restraints) Performing minimization step: 427. Total energy = 26000.5734 kcal/mol (25992.4164 without restraints) Performing minimization step: 428. Total energy = 25968.8337 kcal/mol (25960.6895 without restraints) Performing minimization step: 429. Total energy = 25937.1992 kcal/mol (25929.0675 without restraints) Performing minimization step: 430. Total energy = 25905.6685 kcal/mol (25897.5495 without restraints) Performing minimization step: 431. Total energy = 25874.2418 kcal/mol (25866.1353 without restraints) Performing minimization step: 432. Total energy = 25842.9182 kcal/mol (25834.8239 without restraints) Performing minimization step: 433. Total energy = 25811.6962 kcal/mol (25803.6142 without restraints) Performing minimization step: 434. Total energy = 25780.5753 kcal/mol (25772.5056 without restraints) Performing minimization step: 435. Total energy = 25749.5553 kcal/mol (25741.4978 without restraints) Performing minimization step: 436. Total energy = 25718.6348 kcal/mol (25710.5892 without restraints) Performing minimization step: 437. Total energy = 25687.8135 kcal/mol (25679.7799 without restraints) Performing minimization step: 438. Total energy = 25657.0900 kcal/mol (25649.0682 without restraints) Performing minimization step: 439. Total energy = 25626.4646 kcal/mol (25618.4546 without restraints) Performing minimization step: 440. Total energy = 25595.9359 kcal/mol (25587.9376 without restraints) Performing minimization step: 441. Total energy = 25565.5035 kcal/mol (25557.5167 without restraints) Performing minimization step: 442. Total energy = 25535.1663 kcal/mol (25527.1911 without restraints) Performing minimization step: 443. Total energy = 25504.9244 kcal/mol (25496.9607 without restraints) Performing minimization step: 444. Total energy = 25474.7767 kcal/mol (25466.8243 without restraints) Performing minimization step: 445. Total energy = 25444.7225 kcal/mol (25436.7813 without restraints) Performing minimization step: 446. Total energy = 25414.7618 kcal/mol (25406.8319 without restraints) Performing minimization step: 447. Total energy = 25384.8929 kcal/mol (25376.9741 without restraints) Performing minimization step: 448. Total energy = 25355.1153 kcal/mol (25347.2077 without restraints) Performing minimization step: 449. Total energy = 25325.4287 kcal/mol (25317.5321 without restraints) Performing minimization step: 450. Total energy = 25295.8325 kcal/mol (25287.9467 without restraints) Performing minimization step: 451. Total energy = 25266.3259 kcal/mol (25258.4510 without restraints) Performing minimization step: 452. Total energy = 25236.9082 kcal/mol (25229.0441 without restraints) Performing minimization step: 453. Total energy = 25207.5798 kcal/mol (25199.7266 without restraints) Performing minimization step: 454. Total energy = 25178.3390 kcal/mol (25170.4964 without restraints) Performing minimization step: 455. Total energy = 25149.1857 kcal/mol (25141.3536 without restraints) Performing minimization step: 456. Total energy = 25120.1190 kcal/mol (25112.2975 without restraints) Performing minimization step: 457. Total energy = 25091.1386 kcal/mol (25083.3274 without restraints) Performing minimization step: 458. Total energy = 25062.2437 kcal/mol (25054.4430 without restraints) Performing minimization step: 459. Total energy = 25033.4340 kcal/mol (25025.6436 without restraints) Performing minimization step: 460. Total energy = 25004.7089 kcal/mol (24996.9287 without restraints) Performing minimization step: 461. Total energy = 24976.0680 kcal/mol (24968.2981 without restraints) Performing minimization step: 462. Total energy = 24947.5104 kcal/mol (24939.7507 without restraints) Performing minimization step: 463. Total energy = 24919.0358 kcal/mol (24911.2860 without restraints) Performing minimization step: 464. Total energy = 24890.6432 kcal/mol (24882.9034 without restraints) Performing minimization step: 465. Total energy = 24862.3327 kcal/mol (24854.6030 without restraints) Performing minimization step: 466. Total energy = 24834.1042 kcal/mol (24826.3843 without restraints) Performing minimization step: 467. Total energy = 24805.9560 kcal/mol (24798.2459 without restraints) Performing minimization step: 468. Total energy = 24777.8881 kcal/mol (24770.1879 without restraints) Performing minimization step: 469. Total energy = 24749.9003 kcal/mol (24742.2097 without restraints) Performing minimization step: 470. Total energy = 24721.9914 kcal/mol (24714.3106 without restraints) Performing minimization step: 471. Total energy = 24694.1622 kcal/mol (24686.4911 without restraints) Performing minimization step: 472. Total energy = 24666.4113 kcal/mol (24658.7495 without restraints) Performing minimization step: 473. Total energy = 24638.7377 kcal/mol (24631.0854 without restraints) Performing minimization step: 474. Total energy = 24611.1420 kcal/mol (24603.4992 without restraints) Performing minimization step: 475. Total energy = 24583.6235 kcal/mol (24575.9900 without restraints) Performing minimization step: 476. Total energy = 24556.1811 kcal/mol (24548.5570 without restraints) Performing minimization step: 477. Total energy = 24528.8152 kcal/mol (24521.2004 without restraints) Performing minimization step: 478. Total energy = 24501.5250 kcal/mol (24493.9194 without restraints) Performing minimization step: 479. Total energy = 24474.3107 kcal/mol (24466.7143 without restraints) Performing minimization step: 480. Total energy = 24447.1706 kcal/mol (24439.5833 without restraints) Performing minimization step: 481. Total energy = 24420.1059 kcal/mol (24412.5278 without restraints) Performing minimization step: 482. Total energy = 24393.1144 kcal/mol (24385.5452 without restraints) Performing minimization step: 483. Total energy = 24366.1966 kcal/mol (24358.6365 without restraints) Performing minimization step: 484. Total energy = 24339.3516 kcal/mol (24331.8002 without restraints) Performing minimization step: 485. Total energy = 24312.5790 kcal/mol (24305.0367 without restraints) Performing minimization step: 486. Total energy = 24285.8792 kcal/mol (24278.3455 without restraints) Performing minimization step: 487. Total energy = 24259.2511 kcal/mol (24251.7263 without restraints) Performing minimization step: 488. Total energy = 24232.6946 kcal/mol (24225.1786 without restraints) Performing minimization step: 489. Total energy = 24206.2093 kcal/mol (24198.7020 without restraints) Performing minimization step: 490. Total energy = 24179.7950 kcal/mol (24172.2964 without restraints) Performing minimization step: 491. Total energy = 24153.4506 kcal/mol (24145.9605 without restraints) Performing minimization step: 492. Total energy = 24127.1761 kcal/mol (24119.6945 without restraints) Performing minimization step: 493. Total energy = 24100.9709 kcal/mol (24093.4980 without restraints) Performing minimization step: 494. Total energy = 24074.8358 kcal/mol (24067.3714 without restraints) Performing minimization step: 495. Total energy = 24048.7692 kcal/mol (24041.3132 without restraints) Performing minimization step: 496. Total energy = 24022.7710 kcal/mol (24015.3234 without restraints) Performing minimization step: 497. Total energy = 23996.8411 kcal/mol (23989.4018 without restraints) Performing minimization step: 498. Total energy = 23970.9793 kcal/mol (23963.5482 without restraints) Performing minimization step: 499. Total energy = 23945.1848 kcal/mol (23937.7623 without restraints) Performing minimization step: 500. Total energy = 23919.4576 kcal/mol (23912.0432 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 23893.7970 kcal/mol (23886.3907 without restraints) Performing minimization step: 502. Total energy = 23868.2027 kcal/mol (23860.8046 without restraints) Performing minimization step: 503. Total energy = 23842.6743 kcal/mol (23835.2843 without restraints) Performing minimization step: 504. Total energy = 23817.2116 kcal/mol (23809.8297 without restraints) Performing minimization step: 505. Total energy = 23791.8144 kcal/mol (23784.4406 without restraints) Performing minimization step: 506. Total energy = 23766.4825 kcal/mol (23759.1166 without restraints) Performing minimization step: 507. Total energy = 23741.2148 kcal/mol (23733.8569 without restraints) Performing minimization step: 508. Total energy = 23716.0117 kcal/mol (23708.6617 without restraints) Performing minimization step: 509. Total energy = 23690.8725 kcal/mol (23683.5303 without restraints) Performing minimization step: 510. Total energy = 23665.7973 kcal/mol (23658.4631 without restraints) Performing minimization step: 511. Total energy = 23640.7856 kcal/mol (23633.4592 without restraints) Performing minimization step: 512. Total energy = 23615.8369 kcal/mol (23608.5183 without restraints) Performing minimization step: 513. Total energy = 23590.9511 kcal/mol (23583.6402 without restraints) Performing minimization step: 514. Total energy = 23566.1275 kcal/mol (23558.8244 without restraints) Performing minimization step: 515. Total energy = 23541.3669 kcal/mol (23534.0716 without restraints) Performing minimization step: 516. Total energy = 23516.6679 kcal/mol (23509.3799 without restraints) Performing minimization step: 517. Total energy = 23492.0305 kcal/mol (23484.7503 without restraints) Performing minimization step: 518. Total energy = 23467.4545 kcal/mol (23460.1819 without restraints) Performing minimization step: 519. Total energy = 23442.9404 kcal/mol (23435.6751 without restraints) Performing minimization step: 520. Total energy = 23418.4862 kcal/mol (23411.2286 without restraints) Performing minimization step: 521. Total energy = 23394.0925 kcal/mol (23386.8423 without restraints) Performing minimization step: 522. Total energy = 23369.7594 kcal/mol (23362.5167 without restraints) Performing minimization step: 523. Total energy = 23345.4859 kcal/mol (23338.2505 without restraints) Performing minimization step: 524. Total energy = 23321.2716 kcal/mol (23314.0436 without restraints) Performing minimization step: 525. Total energy = 23297.1175 kcal/mol (23289.8969 without restraints) Performing minimization step: 526. Total energy = 23273.0228 kcal/mol (23265.8097 without restraints) Performing minimization step: 527. Total energy = 23248.9869 kcal/mol (23241.7809 without restraints) Performing minimization step: 528. Total energy = 23225.0092 kcal/mol (23217.8105 without restraints) Performing minimization step: 529. Total energy = 23201.0903 kcal/mol (23193.8988 without restraints) Performing minimization step: 530. Total energy = 23177.2293 kcal/mol (23170.0450 without restraints) Performing minimization step: 531. Total energy = 23153.4261 kcal/mol (23146.2489 without restraints) Performing minimization step: 532. Total energy = 23129.6803 kcal/mol (23122.5103 without restraints) Performing minimization step: 533. Total energy = 23105.9921 kcal/mol (23098.8292 without restraints) Performing minimization step: 534. Total energy = 23082.3609 kcal/mol (23075.2051 without restraints) Performing minimization step: 535. Total energy = 23058.7864 kcal/mol (23051.6376 without restraints) Performing minimization step: 536. Total energy = 23035.2684 kcal/mol (23028.1267 without restraints) Performing minimization step: 537. Total energy = 23011.8070 kcal/mol (23004.6723 without restraints) Performing minimization step: 538. Total energy = 22988.4016 kcal/mol (22981.2739 without restraints) Performing minimization step: 539. Total energy = 22965.0520 kcal/mol (22957.9311 without restraints) Performing minimization step: 540. Total energy = 22941.7583 kcal/mol (22934.6444 without restraints) Performing minimization step: 541. Total energy = 22918.5197 kcal/mol (22911.4125 without restraints) Performing minimization step: 542. Total energy = 22895.3359 kcal/mol (22888.2357 without restraints) Performing minimization step: 543. Total energy = 22872.2074 kcal/mol (22865.1141 without restraints) Performing minimization step: 544. Total energy = 22849.1335 kcal/mol (22842.0469 without restraints) Performing minimization step: 545. Total energy = 22826.1141 kcal/mol (22819.0343 without restraints) Performing minimization step: 546. Total energy = 22803.1490 kcal/mol (22796.0761 without restraints) Performing minimization step: 547. Total energy = 22780.2384 kcal/mol (22773.1721 without restraints) Performing minimization step: 548. Total energy = 22757.3816 kcal/mol (22750.3219 without restraints) Performing minimization step: 549. Total energy = 22734.5778 kcal/mol (22727.5250 without restraints) Performing minimization step: 550. Total energy = 22711.8277 kcal/mol (22704.7815 without restraints) Performing minimization step: 551. Total energy = 22689.1304 kcal/mol (22682.0908 without restraints) Performing minimization step: 552. Total energy = 22666.4863 kcal/mol (22659.4532 without restraints) Performing minimization step: 553. Total energy = 22643.8942 kcal/mol (22636.8674 without restraints) Performing minimization step: 554. Total energy = 22621.3553 kcal/mol (22614.3354 without restraints) Performing minimization step: 555. Total energy = 22598.8689 kcal/mol (22591.8555 without restraints) Performing minimization step: 556. Total energy = 22576.4344 kcal/mol (22569.4275 without restraints) Performing minimization step: 557. Total energy = 22554.0517 kcal/mol (22547.0513 without restraints) Performing minimization step: 558. Total energy = 22531.7205 kcal/mol (22524.7265 without restraints) Performing minimization step: 559. Total energy = 22509.4411 kcal/mol (22502.4536 without restraints) Performing minimization step: 560. Total energy = 22487.2130 kcal/mol (22480.2319 without restraints) Performing minimization step: 561. Total energy = 22465.0356 kcal/mol (22458.0609 without restraints) Performing minimization step: 562. Total energy = 22442.9091 kcal/mol (22435.9407 without restraints) Performing minimization step: 563. Total energy = 22420.8334 kcal/mol (22413.8714 without restraints) Performing minimization step: 564. Total energy = 22398.8079 kcal/mol (22391.8521 without restraints) Performing minimization step: 565. Total energy = 22376.8332 kcal/mol (22369.8839 without restraints) Performing minimization step: 566. Total energy = 22354.9087 kcal/mol (22347.9657 without restraints) Performing minimization step: 567. Total energy = 22333.0337 kcal/mol (22326.0968 without restraints) Performing minimization step: 568. Total energy = 22311.2085 kcal/mol (22304.2779 without restraints) Performing minimization step: 569. Total energy = 22289.4333 kcal/mol (22282.5090 without restraints) Performing minimization step: 570. Total energy = 22267.7071 kcal/mol (22260.7888 without restraints) Performing minimization step: 571. Total energy = 22246.0298 kcal/mol (22239.1177 without restraints) Performing minimization step: 572. Total energy = 22224.4015 kcal/mol (22217.4956 without restraints) Performing minimization step: 573. Total energy = 22202.8215 kcal/mol (22195.9218 without restraints) Performing minimization step: 574. Total energy = 22181.2909 kcal/mol (22174.3972 without restraints) Performing minimization step: 575. Total energy = 22159.8087 kcal/mol (22152.9211 without restraints) Performing minimization step: 576. Total energy = 22138.3747 kcal/mol (22131.4932 without restraints) Performing minimization step: 577. Total energy = 22116.9883 kcal/mol (22110.1126 without restraints) Performing minimization step: 578. Total energy = 22095.6502 kcal/mol (22088.7808 without restraints) Performing minimization step: 579. Total energy = 22074.3601 kcal/mol (22067.4967 without restraints) Performing minimization step: 580. Total energy = 22053.1175 kcal/mol (22046.2600 without restraints) Performing minimization step: 581. Total energy = 22031.9227 kcal/mol (22025.0712 without restraints) Performing minimization step: 582. Total energy = 22010.7751 kcal/mol (22003.9296 without restraints) Performing minimization step: 583. Total energy = 21989.6736 kcal/mol (21982.8338 without restraints) Performing minimization step: 584. Total energy = 21968.6194 kcal/mol (21961.7856 without restraints) Performing minimization step: 585. Total energy = 21947.6121 kcal/mol (21940.7841 without restraints) Performing minimization step: 586. Total energy = 21926.6507 kcal/mol (21919.8288 without restraints) Performing minimization step: 587. Total energy = 21905.7367 kcal/mol (21898.9206 without restraints) Performing minimization step: 588. Total energy = 21884.8687 kcal/mol (21878.0584 without restraints) Performing minimization step: 589. Total energy = 21864.0468 kcal/mol (21857.2423 without restraints) Performing minimization step: 590. Total energy = 21843.2711 kcal/mol (21836.4725 without restraints) Performing minimization step: 591. Total energy = 21822.5409 kcal/mol (21815.7480 without restraints) Performing minimization step: 592. Total energy = 21801.8558 kcal/mol (21795.0687 without restraints) Performing minimization step: 593. Total energy = 21781.2166 kcal/mol (21774.4352 without restraints) Performing minimization step: 594. Total energy = 21760.6227 kcal/mol (21753.8470 without restraints) Performing minimization step: 595. Total energy = 21740.0739 kcal/mol (21733.3040 without restraints) Performing minimization step: 596. Total energy = 21719.5702 kcal/mol (21712.8058 without restraints) Performing minimization step: 597. Total energy = 21699.1112 kcal/mol (21692.3525 without restraints) Performing minimization step: 598. Total energy = 21678.6971 kcal/mol (21671.9442 without restraints) Performing minimization step: 599. Total energy = 21658.3274 kcal/mol (21651.5800 without restraints) Performing minimization step: 600. Total energy = 21638.0022 kcal/mol (21631.2605 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 21617.7209 kcal/mol (21610.9847 without restraints) Performing minimization step: 602. Total energy = 21597.4838 kcal/mol (21590.7532 without restraints) Performing minimization step: 603. Total energy = 21577.2912 kcal/mol (21570.5662 without restraints) Performing minimization step: 604. Total energy = 21557.1418 kcal/mol (21550.4223 without restraints) Performing minimization step: 605. Total energy = 21537.0357 kcal/mol (21530.3219 without restraints) Performing minimization step: 606. Total energy = 21516.9733 kcal/mol (21510.2650 without restraints) Performing minimization step: 607. Total energy = 21496.9543 kcal/mol (21490.2514 without restraints) Performing minimization step: 608. Total energy = 21476.9784 kcal/mol (21470.2810 without restraints) Performing minimization step: 609. Total energy = 21457.0456 kcal/mol (21450.3537 without restraints) Performing minimization step: 610. Total energy = 21437.1561 kcal/mol (21430.4696 without restraints) Performing minimization step: 611. Total energy = 21417.3092 kcal/mol (21410.6282 without restraints) Performing minimization step: 612. Total energy = 21397.5043 kcal/mol (21390.8287 without restraints) Performing minimization step: 613. Total energy = 21377.7427 kcal/mol (21371.0724 without restraints) Performing minimization step: 614. Total energy = 21358.0227 kcal/mol (21351.3579 without restraints) Performing minimization step: 615. Total energy = 21338.3452 kcal/mol (21331.6858 without restraints) Performing minimization step: 616. Total energy = 21318.7097 kcal/mol (21312.0555 without restraints) Performing minimization step: 617. Total energy = 21299.1167 kcal/mol (21292.4679 without restraints) Performing minimization step: 618. Total energy = 21279.5648 kcal/mol (21272.9214 without restraints) Performing minimization step: 619. Total energy = 21260.0547 kcal/mol (21253.4165 without restraints) Performing minimization step: 620. Total energy = 21240.5863 kcal/mol (21233.9535 without restraints) Performing minimization step: 621. Total energy = 21221.1592 kcal/mol (21214.5317 without restraints) Performing minimization step: 622. Total energy = 21201.7734 kcal/mol (21195.1512 without restraints) Performing minimization step: 623. Total energy = 21182.4290 kcal/mol (21175.8120 without restraints) Performing minimization step: 624. Total energy = 21163.1250 kcal/mol (21156.5131 without restraints) Performing minimization step: 625. Total energy = 21143.8620 kcal/mol (21137.2555 without restraints) Performing minimization step: 626. Total energy = 21124.6404 kcal/mol (21118.0389 without restraints) Performing minimization step: 627. Total energy = 21105.4587 kcal/mol (21098.8625 without restraints) Performing minimization step: 628. Total energy = 21086.3184 kcal/mol (21079.7278 without restraints) Performing minimization step: 629. Total energy = 21067.2182 kcal/mol (21060.6324 without restraints) Performing minimization step: 630. Total energy = 21048.1578 kcal/mol (21041.5771 without restraints) Performing minimization step: 631. Total energy = 21029.1375 kcal/mol (21022.5619 without restraints) Performing minimization step: 632. Total energy = 21010.1574 kcal/mol (21003.5870 without restraints) Performing minimization step: 633. Total energy = 20991.2172 kcal/mol (20984.6518 without restraints) Performing minimization step: 634. Total energy = 20972.3170 kcal/mol (20965.7568 without restraints) Performing minimization step: 635. Total energy = 20953.4556 kcal/mol (20946.9004 without restraints) Performing minimization step: 636. Total energy = 20934.6341 kcal/mol (20928.0839 without restraints) Performing minimization step: 637. Total energy = 20915.8521 kcal/mol (20909.3070 without restraints) Performing minimization step: 638. Total energy = 20897.1090 kcal/mol (20890.5688 without restraints) Performing minimization step: 639. Total energy = 20878.4050 kcal/mol (20871.8699 without restraints) Performing minimization step: 640. Total energy = 20859.7398 kcal/mol (20853.2097 without restraints) Performing minimization step: 641. Total energy = 20841.1136 kcal/mol (20834.5884 without restraints) Performing minimization step: 642. Total energy = 20822.5260 kcal/mol (20816.0060 without restraints) Performing minimization step: 643. Total energy = 20803.9774 kcal/mol (20797.4623 without restraints) Performing minimization step: 644. Total energy = 20785.4673 kcal/mol (20778.9572 without restraints) Performing minimization step: 645. Total energy = 20766.9952 kcal/mol (20760.4900 without restraints) Performing minimization step: 646. Total energy = 20748.5619 kcal/mol (20742.0618 without restraints) Performing minimization step: 647. Total energy = 20730.1673 kcal/mol (20723.6719 without restraints) Performing minimization step: 648. Total energy = 20711.8103 kcal/mol (20705.3198 without restraints) Performing minimization step: 649. Total energy = 20693.4910 kcal/mol (20687.0054 without restraints) Performing minimization step: 650. Total energy = 20675.2097 kcal/mol (20668.7289 without restraints) Performing minimization step: 651. Total energy = 20656.9652 kcal/mol (20650.4893 without restraints) Performing minimization step: 652. Total energy = 20638.7593 kcal/mol (20632.2882 without restraints) Performing minimization step: 653. Total energy = 20620.5904 kcal/mol (20614.1241 without restraints) Performing minimization step: 654. Total energy = 20602.4586 kcal/mol (20595.9972 without restraints) Performing minimization step: 655. Total energy = 20584.3645 kcal/mol (20577.9079 without restraints) Performing minimization step: 656. Total energy = 20566.3077 kcal/mol (20559.8558 without restraints) Performing minimization step: 657. Total energy = 20548.2875 kcal/mol (20541.8405 without restraints) Performing minimization step: 658. Total energy = 20530.3044 kcal/mol (20523.8622 without restraints) Performing minimization step: 659. Total energy = 20512.3586 kcal/mol (20505.9211 without restraints) Performing minimization step: 660. Total energy = 20494.4493 kcal/mol (20488.0166 without restraints) Performing minimization step: 661. Total energy = 20476.5758 kcal/mol (20470.1478 without restraints) Performing minimization step: 662. Total energy = 20458.7391 kcal/mol (20452.3158 without restraints) Performing minimization step: 663. Total energy = 20440.9394 kcal/mol (20434.5209 without restraints) Performing minimization step: 664. Total energy = 20423.1754 kcal/mol (20416.7615 without restraints) Performing minimization step: 665. Total energy = 20405.4483 kcal/mol (20399.0390 without restraints) Performing minimization step: 666. Total energy = 20387.7564 kcal/mol (20381.3519 without restraints) Performing minimization step: 667. Total energy = 20370.1007 kcal/mol (20363.7007 without restraints) Performing minimization step: 668. Total energy = 20352.4801 kcal/mol (20346.0847 without restraints) Performing minimization step: 669. Total energy = 20334.8960 kcal/mol (20328.5053 without restraints) Performing minimization step: 670. Total energy = 20317.3466 kcal/mol (20310.9606 without restraints) Performing minimization step: 671. Total energy = 20299.8336 kcal/mol (20293.4521 without restraints) Performing minimization step: 672. Total energy = 20282.3561 kcal/mol (20275.9793 without restraints) Performing minimization step: 673. Total energy = 20264.9140 kcal/mol (20258.5418 without restraints) Performing minimization step: 674. Total energy = 20247.5067 kcal/mol (20241.1391 without restraints) Performing minimization step: 675. Total energy = 20230.1348 kcal/mol (20223.7715 without restraints) Performing minimization step: 676. Total energy = 20212.7977 kcal/mol (20206.4392 without restraints) Performing minimization step: 677. Total energy = 20195.4958 kcal/mol (20189.1419 without restraints) Performing minimization step: 678. Total energy = 20178.2282 kcal/mol (20171.8785 without restraints) Performing minimization step: 679. Total energy = 20160.9957 kcal/mol (20154.6507 without restraints) Performing minimization step: 680. Total energy = 20143.7976 kcal/mol (20137.4571 without restraints) Performing minimization step: 681. Total energy = 20126.6334 kcal/mol (20120.2974 without restraints) Performing minimization step: 682. Total energy = 20109.5040 kcal/mol (20103.1725 without restraints) Performing minimization step: 683. Total energy = 20092.4092 kcal/mol (20086.0822 without restraints) Performing minimization step: 684. Total energy = 20075.3486 kcal/mol (20069.0260 without restraints) Performing minimization step: 685. Total energy = 20058.3220 kcal/mol (20052.0039 without restraints) Performing minimization step: 686. Total energy = 20041.3295 kcal/mol (20035.0159 without restraints) Performing minimization step: 687. Total energy = 20024.3709 kcal/mol (20018.0616 without restraints) Performing minimization step: 688. Total energy = 20007.4462 kcal/mol (20001.1413 without restraints) Performing minimization step: 689. Total energy = 19990.5551 kcal/mol (19984.2547 without restraints) Performing minimization step: 690. Total energy = 19973.6974 kcal/mol (19967.4013 without restraints) Performing minimization step: 691. Total energy = 19956.8732 kcal/mol (19950.5815 without restraints) Performing minimization step: 692. Total energy = 19940.0823 kcal/mol (19933.7949 without restraints) Performing minimization step: 693. Total energy = 19923.3249 kcal/mol (19917.0419 without restraints) Performing minimization step: 694. Total energy = 19906.6007 kcal/mol (19900.3221 without restraints) Performing minimization step: 695. Total energy = 19889.9097 kcal/mol (19883.6353 without restraints) Performing minimization step: 696. Total energy = 19873.2516 kcal/mol (19866.9816 without restraints) Performing minimization step: 697. Total energy = 19856.6265 kcal/mol (19850.3608 without restraints) Performing minimization step: 698. Total energy = 19840.0339 kcal/mol (19833.7725 without restraints) Performing minimization step: 699. Total energy = 19823.4743 kcal/mol (19817.2172 without restraints) Performing minimization step: 700. Total energy = 19806.9474 kcal/mol (19800.6945 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 19790.4530 kcal/mol (19784.2044 without restraints) Performing minimization step: 702. Total energy = 19773.9909 kcal/mol (19767.7466 without restraints) Performing minimization step: 703. Total energy = 19757.5611 kcal/mol (19751.3211 without restraints) Performing minimization step: 704. Total energy = 19741.1639 kcal/mol (19734.9282 without restraints) Performing minimization step: 705. Total energy = 19724.7989 kcal/mol (19718.5673 without restraints) Performing minimization step: 706. Total energy = 19708.4662 kcal/mol (19702.2388 without restraints) Performing minimization step: 707. Total energy = 19692.1651 kcal/mol (19685.9419 without restraints) Performing minimization step: 708. Total energy = 19675.8959 kcal/mol (19669.6769 without restraints) Performing minimization step: 709. Total energy = 19659.6589 kcal/mol (19653.4443 without restraints) Performing minimization step: 710. Total energy = 19643.4533 kcal/mol (19637.2425 without restraints) Performing minimization step: 711. Total energy = 19627.2790 kcal/mol (19621.0726 without restraints) Performing minimization step: 712. Total energy = 19611.1364 kcal/mol (19604.9340 without restraints) Performing minimization step: 713. Total energy = 19595.0252 kcal/mol (19588.8271 without restraints) Performing minimization step: 714. Total energy = 19578.9455 kcal/mol (19572.7514 without restraints) Performing minimization step: 715. Total energy = 19562.8972 kcal/mol (19556.7073 without restraints) Performing minimization step: 716. Total energy = 19546.8799 kcal/mol (19540.6942 without restraints) Performing minimization step: 717. Total energy = 19530.8936 kcal/mol (19524.7118 without restraints) Performing minimization step: 718. Total energy = 19514.9385 kcal/mol (19508.7609 without restraints) Performing minimization step: 719. Total energy = 19499.0152 kcal/mol (19492.8420 without restraints) Performing minimization step: 720. Total energy = 19483.1224 kcal/mol (19476.9530 without restraints) Performing minimization step: 721. Total energy = 19467.2598 kcal/mol (19461.0945 without restraints) Performing minimization step: 722. Total energy = 19451.4278 kcal/mol (19445.2664 without restraints) Performing minimization step: 723. Total energy = 19435.6262 kcal/mol (19429.4690 without restraints) Performing minimization step: 724. Total energy = 19419.8551 kcal/mol (19413.7019 without restraints) Performing minimization step: 725. Total energy = 19404.1146 kcal/mol (19397.9655 without restraints) Performing minimization step: 726. Total energy = 19388.4043 kcal/mol (19382.2590 without restraints) Performing minimization step: 727. Total energy = 19372.7243 kcal/mol (19366.5831 without restraints) Performing minimization step: 728. Total energy = 19357.0742 kcal/mol (19350.9370 without restraints) Performing minimization step: 729. Total energy = 19341.4540 kcal/mol (19335.3208 without restraints) Performing minimization step: 730. Total energy = 19325.8642 kcal/mol (19319.7349 without restraints) Performing minimization step: 731. Total energy = 19310.3038 kcal/mol (19304.1785 without restraints) Performing minimization step: 732. Total energy = 19294.7735 kcal/mol (19288.6524 without restraints) Performing minimization step: 733. Total energy = 19279.2734 kcal/mol (19273.1558 without restraints) Performing minimization step: 734. Total energy = 19263.8021 kcal/mol (19257.6886 without restraints) Performing minimization step: 735. Total energy = 19248.3609 kcal/mol (19242.2513 without restraints) Performing minimization step: 736. Total energy = 19232.9488 kcal/mol (19226.8431 without restraints) Performing minimization step: 737. Total energy = 19217.5660 kcal/mol (19211.4643 without restraints) Performing minimization step: 738. Total energy = 19202.2130 kcal/mol (19196.1153 without restraints) Performing minimization step: 739. Total energy = 19186.8889 kcal/mol (19180.7949 without restraints) Performing minimization step: 740. Total energy = 19171.5935 kcal/mol (19165.5034 without restraints) Performing minimization step: 741. Total energy = 19156.3275 kcal/mol (19150.2411 without restraints) Performing minimization step: 742. Total energy = 19141.0901 kcal/mol (19135.0078 without restraints) Performing minimization step: 743. Total energy = 19125.8817 kcal/mol (19119.8032 without restraints) Performing minimization step: 744. Total energy = 19110.7018 kcal/mol (19104.6271 without restraints) Performing minimization step: 745. Total energy = 19095.5515 kcal/mol (19089.4807 without restraints) Performing minimization step: 746. Total energy = 19080.4291 kcal/mol (19074.3621 without restraints) Performing minimization step: 747. Total energy = 19065.3351 kcal/mol (19059.2720 without restraints) Performing minimization step: 748. Total energy = 19050.2698 kcal/mol (19044.2103 without restraints) Performing minimization step: 749. Total energy = 19035.2331 kcal/mol (19029.1777 without restraints) Performing minimization step: 750. Total energy = 19020.2244 kcal/mol (19014.1726 without restraints) Performing minimization step: 751. Total energy = 19005.2441 kcal/mol (18999.1961 without restraints) Performing minimization step: 752. Total energy = 18990.2920 kcal/mol (18984.2479 without restraints) Performing minimization step: 753. Total energy = 18975.3680 kcal/mol (18969.3273 without restraints) Performing minimization step: 754. Total energy = 18960.4716 kcal/mol (18954.4348 without restraints) Performing minimization step: 755. Total energy = 18945.6034 kcal/mol (18939.5704 without restraints) Performing minimization step: 756. Total energy = 18930.7632 kcal/mol (18924.7339 without restraints) Performing minimization step: 757. Total energy = 18915.9508 kcal/mol (18909.9252 without restraints) Performing minimization step: 758. Total energy = 18901.1655 kcal/mol (18895.1437 without restraints) Performing minimization step: 759. Total energy = 18886.4080 kcal/mol (18880.3898 without restraints) Performing minimization step: 760. Total energy = 18871.6785 kcal/mol (18865.6641 without restraints) Performing minimization step: 761. Total energy = 18856.9763 kcal/mol (18850.9655 without restraints) Performing minimization step: 762. Total energy = 18842.3011 kcal/mol (18836.2939 without restraints) Performing minimization step: 763. Total energy = 18827.6539 kcal/mol (18821.6505 without restraints) Performing minimization step: 764. Total energy = 18813.0335 kcal/mol (18807.0337 without restraints) Performing minimization step: 765. Total energy = 18798.4403 kcal/mol (18792.4442 without restraints) Performing minimization step: 766. Total energy = 18783.8742 kcal/mol (18777.8817 without restraints) Performing minimization step: 767. Total energy = 18769.3348 kcal/mol (18763.3460 without restraints) Performing minimization step: 768. Total energy = 18754.8219 kcal/mol (18748.8366 without restraints) Performing minimization step: 769. Total energy = 18740.3361 kcal/mol (18734.3545 without restraints) Performing minimization step: 770. Total energy = 18725.8775 kcal/mol (18719.8995 without restraints) Performing minimization step: 771. Total energy = 18711.4451 kcal/mol (18705.4706 without restraints) Performing minimization step: 772. Total energy = 18697.0395 kcal/mol (18691.0687 without restraints) Performing minimization step: 773. Total energy = 18682.6602 kcal/mol (18676.6929 without restraints) Performing minimization step: 774. Total energy = 18668.3076 kcal/mol (18662.3439 without restraints) Performing minimization step: 775. Total energy = 18653.9815 kcal/mol (18648.0214 without restraints) Performing minimization step: 776. Total energy = 18639.6816 kcal/mol (18633.7251 without restraints) Performing minimization step: 777. Total energy = 18625.4079 kcal/mol (18619.4549 without restraints) Performing minimization step: 778. Total energy = 18611.1602 kcal/mol (18605.2108 without restraints) Performing minimization step: 779. Total energy = 18596.9391 kcal/mol (18590.9933 without restraints) Performing minimization step: 780. Total energy = 18582.7436 kcal/mol (18576.8013 without restraints) Performing minimization step: 781. Total energy = 18568.5739 kcal/mol (18562.6350 without restraints) Performing minimization step: 782. Total energy = 18554.4301 kcal/mol (18548.4948 without restraints) Performing minimization step: 783. Total energy = 18540.3121 kcal/mol (18534.3803 without restraints) Performing minimization step: 784. Total energy = 18526.2194 kcal/mol (18520.2910 without restraints) Performing minimization step: 785. Total energy = 18512.1529 kcal/mol (18506.2280 without restraints) Performing minimization step: 786. Total energy = 18498.1119 kcal/mol (18492.1905 without restraints) Performing minimization step: 787. Total energy = 18484.0960 kcal/mol (18478.1781 without restraints) Performing minimization step: 788. Total energy = 18470.1057 kcal/mol (18464.1911 without restraints) Performing minimization step: 789. Total energy = 18456.1404 kcal/mol (18450.2294 without restraints) Performing minimization step: 790. Total energy = 18442.2010 kcal/mol (18436.2934 without restraints) Performing minimization step: 791. Total energy = 18428.2866 kcal/mol (18422.3823 without restraints) Performing minimization step: 792. Total energy = 18414.3973 kcal/mol (18408.4965 without restraints) Performing minimization step: 793. Total energy = 18400.5330 kcal/mol (18394.6357 without restraints) Performing minimization step: 794. Total energy = 18386.6939 kcal/mol (18380.7999 without restraints) Performing minimization step: 795. Total energy = 18372.8792 kcal/mol (18366.9886 without restraints) Performing minimization step: 796. Total energy = 18359.0898 kcal/mol (18353.2025 without restraints) Performing minimization step: 797. Total energy = 18345.3251 kcal/mol (18339.4413 without restraints) Performing minimization step: 798. Total energy = 18331.5854 kcal/mol (18325.7050 without restraints) Performing minimization step: 799. Total energy = 18317.8707 kcal/mol (18311.9936 without restraints) Performing minimization step: 800. Total energy = 18304.1799 kcal/mol (18298.3062 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 18290.5137 kcal/mol (18284.6433 without restraints) Performing minimization step: 802. Total energy = 18276.8720 kcal/mol (18271.0050 without restraints) Performing minimization step: 803. Total energy = 18263.2544 kcal/mol (18257.3907 without restraints) Performing minimization step: 804. Total energy = 18249.6613 kcal/mol (18243.8010 without restraints) Performing minimization step: 805. Total energy = 18236.0924 kcal/mol (18230.2352 without restraints) Performing minimization step: 806. Total energy = 18222.5476 kcal/mol (18216.6939 without restraints) Performing minimization step: 807. Total energy = 18209.0272 kcal/mol (18203.1768 without restraints) Performing minimization step: 808. Total energy = 18195.5305 kcal/mol (18189.6833 without restraints) Performing minimization step: 809. Total energy = 18182.0574 kcal/mol (18176.2135 without restraints) Performing minimization step: 810. Total energy = 18168.6088 kcal/mol (18162.7683 without restraints) Performing minimization step: 811. Total energy = 18155.1845 kcal/mol (18149.3472 without restraints) Performing minimization step: 812. Total energy = 18141.7832 kcal/mol (18135.9492 without restraints) Performing minimization step: 813. Total energy = 18128.4059 kcal/mol (18122.5752 without restraints) Performing minimization step: 814. Total energy = 18115.0522 kcal/mol (18109.2247 without restraints) Performing minimization step: 815. Total energy = 18101.7219 kcal/mol (18095.8977 without restraints) Performing minimization step: 816. Total energy = 18088.4149 kcal/mol (18082.5938 without restraints) Performing minimization step: 817. Total energy = 18075.1317 kcal/mol (18069.3139 without restraints) Performing minimization step: 818. Total energy = 18061.8719 kcal/mol (18056.0573 without restraints) Performing minimization step: 819. Total energy = 18048.6349 kcal/mol (18042.8234 without restraints) Performing minimization step: 820. Total energy = 18035.4210 kcal/mol (18029.6129 without restraints) Performing minimization step: 821. Total energy = 18022.2304 kcal/mol (18016.4256 without restraints) Performing minimization step: 822. Total energy = 18009.0633 kcal/mol (18003.2615 without restraints) Performing minimization step: 823. Total energy = 17995.9191 kcal/mol (17990.1205 without restraints) Performing minimization step: 824. Total energy = 17982.7983 kcal/mol (17977.0028 without restraints) Performing minimization step: 825. Total energy = 17969.7000 kcal/mol (17963.9078 without restraints) Performing minimization step: 826. Total energy = 17956.6246 kcal/mol (17950.8354 without restraints) Performing minimization step: 827. Total energy = 17943.5720 kcal/mol (17937.7861 without restraints) Performing minimization step: 828. Total energy = 17930.5417 kcal/mol (17924.7589 without restraints) Performing minimization step: 829. Total energy = 17917.5343 kcal/mol (17911.7547 without restraints) Performing minimization step: 830. Total energy = 17904.5494 kcal/mol (17898.7729 without restraints) Performing minimization step: 831. Total energy = 17891.5865 kcal/mol (17885.8130 without restraints) Performing minimization step: 832. Total energy = 17878.6466 kcal/mol (17872.8763 without restraints) Performing minimization step: 833. Total energy = 17865.7289 kcal/mol (17859.9617 without restraints) Performing minimization step: 834. Total energy = 17852.8338 kcal/mol (17847.0697 without restraints) Performing minimization step: 835. Total energy = 17839.9609 kcal/mol (17834.1998 without restraints) Performing minimization step: 836. Total energy = 17827.1100 kcal/mol (17821.3521 without restraints) Performing minimization step: 837. Total energy = 17814.2815 kcal/mol (17808.5266 without restraints) Performing minimization step: 838. Total energy = 17801.4748 kcal/mol (17795.7230 without restraints) Performing minimization step: 839. Total energy = 17788.6902 kcal/mol (17782.9413 without restraints) Performing minimization step: 840. Total energy = 17775.9275 kcal/mol (17770.1819 without restraints) Performing minimization step: 841. Total energy = 17763.1870 kcal/mol (17757.4444 without restraints) Performing minimization step: 842. Total energy = 17750.4682 kcal/mol (17744.7285 without restraints) Performing minimization step: 843. Total energy = 17737.7711 kcal/mol (17732.0347 without restraints) Performing minimization step: 844. Total energy = 17725.0963 kcal/mol (17719.3628 without restraints) Performing minimization step: 845. Total energy = 17712.4426 kcal/mol (17706.7122 without restraints) Performing minimization step: 846. Total energy = 17699.8108 kcal/mol (17694.0834 without restraints) Performing minimization step: 847. Total energy = 17687.2007 kcal/mol (17681.4763 without restraints) Performing minimization step: 848. Total energy = 17674.6126 kcal/mol (17668.8913 without restraints) Performing minimization step: 849. Total energy = 17662.0452 kcal/mol (17656.3268 without restraints) Performing minimization step: 850. Total energy = 17649.4991 kcal/mol (17643.7837 without restraints) Performing minimization step: 851. Total energy = 17636.9742 kcal/mol (17631.2617 without restraints) Performing minimization step: 852. Total energy = 17624.4706 kcal/mol (17618.7611 without restraints) Performing minimization step: 853. Total energy = 17611.9879 kcal/mol (17606.2814 without restraints) Performing minimization step: 854. Total energy = 17599.5264 kcal/mol (17593.8228 without restraints) Performing minimization step: 855. Total energy = 17587.0856 kcal/mol (17581.3850 without restraints) Performing minimization step: 856. Total energy = 17574.6661 kcal/mol (17568.9684 without restraints) Performing minimization step: 857. Total energy = 17562.2677 kcal/mol (17556.5729 without restraints) Performing minimization step: 858. Total energy = 17549.8896 kcal/mol (17544.1979 without restraints) Performing minimization step: 859. Total energy = 17537.5329 kcal/mol (17531.8441 without restraints) Performing minimization step: 860. Total energy = 17525.1968 kcal/mol (17519.5108 without restraints) Performing minimization step: 861. Total energy = 17512.8809 kcal/mol (17507.1979 without restraints) Performing minimization step: 862. Total energy = 17500.5862 kcal/mol (17494.9058 without restraints) Performing minimization step: 863. Total energy = 17488.3117 kcal/mol (17482.6345 without restraints) Performing minimization step: 864. Total energy = 17476.0581 kcal/mol (17470.3838 without restraints) Performing minimization step: 865. Total energy = 17463.8245 kcal/mol (17458.1531 without restraints) Performing minimization step: 866. Total energy = 17451.6117 kcal/mol (17445.9431 without restraints) Performing minimization step: 867. Total energy = 17439.4192 kcal/mol (17433.7536 without restraints) Performing minimization step: 868. Total energy = 17427.2481 kcal/mol (17421.5854 without restraints) Performing minimization step: 869. Total energy = 17415.0965 kcal/mol (17409.4366 without restraints) Performing minimization step: 870. Total energy = 17402.9648 kcal/mol (17397.3077 without restraints) Performing minimization step: 871. Total energy = 17390.8523 kcal/mol (17385.1981 without restraints) Performing minimization step: 872. Total energy = 17378.7610 kcal/mol (17373.1096 without restraints) Performing minimization step: 873. Total energy = 17366.6894 kcal/mol (17361.0409 without restraints) Performing minimization step: 874. Total energy = 17354.6383 kcal/mol (17348.9926 without restraints) Performing minimization step: 875. Total energy = 17342.6067 kcal/mol (17336.9638 without restraints) Performing minimization step: 876. Total energy = 17330.5946 kcal/mol (17324.9546 without restraints) Performing minimization step: 877. Total energy = 17318.6027 kcal/mol (17312.9654 without restraints) Performing minimization step: 878. Total energy = 17306.6305 kcal/mol (17300.9961 without restraints) Performing minimization step: 879. Total energy = 17294.6786 kcal/mol (17289.0470 without restraints) Performing minimization step: 880. Total energy = 17282.7456 kcal/mol (17277.1166 without restraints) Performing minimization step: 881. Total energy = 17270.8322 kcal/mol (17265.2061 without restraints) Performing minimization step: 882. Total energy = 17258.9385 kcal/mol (17253.3152 without restraints) Performing minimization step: 883. Total energy = 17247.0637 kcal/mol (17241.4432 without restraints) Performing minimization step: 884. Total energy = 17235.2084 kcal/mol (17229.5905 without restraints) Performing minimization step: 885. Total energy = 17223.3727 kcal/mol (17217.7577 without restraints) Performing minimization step: 886. Total energy = 17211.5569 kcal/mol (17205.9447 without restraints) Performing minimization step: 887. Total energy = 17199.7604 kcal/mol (17194.1509 without restraints) Performing minimization step: 888. Total energy = 17187.9826 kcal/mol (17182.3760 without restraints) Performing minimization step: 889. Total energy = 17176.2241 kcal/mol (17170.6201 without restraints) Performing minimization step: 890. Total energy = 17164.4844 kcal/mol (17158.8830 without restraints) Performing minimization step: 891. Total energy = 17152.7637 kcal/mol (17147.1651 without restraints) Performing minimization step: 892. Total energy = 17141.0620 kcal/mol (17135.4662 without restraints) Performing minimization step: 893. Total energy = 17129.3800 kcal/mol (17123.7868 without restraints) Performing minimization step: 894. Total energy = 17117.7159 kcal/mol (17112.1255 without restraints) Performing minimization step: 895. Total energy = 17106.0714 kcal/mol (17100.4836 without restraints) Performing minimization step: 896. Total energy = 17094.4457 kcal/mol (17088.8606 without restraints) Performing minimization step: 897. Total energy = 17082.8384 kcal/mol (17077.2562 without restraints) Performing minimization step: 898. Total energy = 17071.2493 kcal/mol (17065.6696 without restraints) Performing minimization step: 899. Total energy = 17059.6798 kcal/mol (17054.1028 without restraints) Performing minimization step: 900. Total energy = 17048.1280 kcal/mol (17042.5537 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 17036.5947 kcal/mol (17031.0230 without restraints) Performing minimization step: 902. Total energy = 17025.0802 kcal/mol (17019.5113 without restraints) Performing minimization step: 903. Total energy = 17013.5841 kcal/mol (17008.0177 without restraints) Performing minimization step: 904. Total energy = 17002.1069 kcal/mol (16996.5433 without restraints) Performing minimization step: 905. Total energy = 16990.6477 kcal/mol (16985.0866 without restraints) Performing minimization step: 906. Total energy = 16979.2063 kcal/mol (16973.6477 without restraints) Performing minimization step: 907. Total energy = 16967.7832 kcal/mol (16962.2275 without restraints) Performing minimization step: 908. Total energy = 16956.3785 kcal/mol (16950.8253 without restraints) Performing minimization step: 909. Total energy = 16944.9913 kcal/mol (16939.4406 without restraints) Performing minimization step: 910. Total energy = 16933.6228 kcal/mol (16928.0748 without restraints) Performing minimization step: 911. Total energy = 16922.2723 kcal/mol (16916.7269 without restraints) Performing minimization step: 912. Total energy = 16910.9400 kcal/mol (16905.3972 without restraints) Performing minimization step: 913. Total energy = 16899.6250 kcal/mol (16894.0850 without restraints) Performing minimization step: 914. Total energy = 16888.3280 kcal/mol (16882.7904 without restraints) Performing minimization step: 915. Total energy = 16877.0490 kcal/mol (16871.5141 without restraints) Performing minimization step: 916. Total energy = 16865.7878 kcal/mol (16860.2555 without restraints) Performing minimization step: 917. Total energy = 16854.5442 kcal/mol (16849.0143 without restraints) Performing minimization step: 918. Total energy = 16843.3185 kcal/mol (16837.7912 without restraints) Performing minimization step: 919. Total energy = 16832.1103 kcal/mol (16826.5854 without restraints) Performing minimization step: 920. Total energy = 16820.9190 kcal/mol (16815.3969 without restraints) Performing minimization step: 921. Total energy = 16809.7459 kcal/mol (16804.2263 without restraints) Performing minimization step: 922. Total energy = 16798.5905 kcal/mol (16793.0735 without restraints) Performing minimization step: 923. Total energy = 16787.4526 kcal/mol (16781.9382 without restraints) Performing minimization step: 924. Total energy = 16776.3323 kcal/mol (16770.8203 without restraints) Performing minimization step: 925. Total energy = 16765.2284 kcal/mol (16759.7188 without restraints) Performing minimization step: 926. Total energy = 16754.1424 kcal/mol (16748.6356 without restraints) Performing minimization step: 927. Total energy = 16743.0731 kcal/mol (16737.5685 without restraints) Performing minimization step: 928. Total energy = 16732.0212 kcal/mol (16726.5192 without restraints) Performing minimization step: 929. Total energy = 16720.9866 kcal/mol (16715.4872 without restraints) Performing minimization step: 930. Total energy = 16709.9690 kcal/mol (16704.4721 without restraints) Performing minimization step: 931. Total energy = 16698.9688 kcal/mol (16693.4743 without restraints) Performing minimization step: 932. Total energy = 16687.9852 kcal/mol (16682.4932 without restraints) Performing minimization step: 933. Total energy = 16677.0187 kcal/mol (16671.5293 without restraints) Performing minimization step: 934. Total energy = 16666.0692 kcal/mol (16660.5822 without restraints) Performing minimization step: 935. Total energy = 16655.1361 kcal/mol (16649.6515 without restraints) Performing minimization step: 936. Total energy = 16644.2203 kcal/mol (16638.7383 without restraints) Performing minimization step: 937. Total energy = 16633.3214 kcal/mol (16627.8418 without restraints) Performing minimization step: 938. Total energy = 16622.4390 kcal/mol (16616.9619 without restraints) Performing minimization step: 939. Total energy = 16611.5735 kcal/mol (16606.0988 without restraints) Performing minimization step: 940. Total energy = 16600.7244 kcal/mol (16595.2522 without restraints) Performing minimization step: 941. Total energy = 16589.8920 kcal/mol (16584.4222 without restraints) Performing minimization step: 942. Total energy = 16579.0757 kcal/mol (16573.6083 without restraints) Performing minimization step: 943. Total energy = 16568.2761 kcal/mol (16562.8111 without restraints) Performing minimization step: 944. Total energy = 16557.4931 kcal/mol (16552.0304 without restraints) Performing minimization step: 945. Total energy = 16546.7265 kcal/mol (16541.2663 without restraints) Performing minimization step: 946. Total energy = 16535.9765 kcal/mol (16530.5189 without restraints) Performing minimization step: 947. Total energy = 16525.2430 kcal/mol (16519.7877 without restraints) Performing minimization step: 948. Total energy = 16514.5255 kcal/mol (16509.0727 without restraints) Performing minimization step: 949. Total energy = 16503.8251 kcal/mol (16498.3747 without restraints) Performing minimization step: 950. Total energy = 16493.1402 kcal/mol (16487.6922 without restraints) Performing minimization step: 951. Total energy = 16482.4720 kcal/mol (16477.0264 without restraints) Performing minimization step: 952. Total energy = 16471.8194 kcal/mol (16466.3761 without restraints) Performing minimization step: 953. Total energy = 16461.1837 kcal/mol (16455.7427 without restraints) Performing minimization step: 954. Total energy = 16450.5628 kcal/mol (16445.1243 without restraints) Performing minimization step: 955. Total energy = 16439.9584 kcal/mol (16434.5221 without restraints) Performing minimization step: 956. Total energy = 16429.3697 kcal/mol (16423.9359 without restraints) Performing minimization step: 957. Total energy = 16418.7970 kcal/mol (16413.3655 without restraints) Performing minimization step: 958. Total energy = 16408.2402 kcal/mol (16402.8111 without restraints) Performing minimization step: 959. Total energy = 16397.6990 kcal/mol (16392.2722 without restraints) Performing minimization step: 960. Total energy = 16387.1737 kcal/mol (16381.7492 without restraints) Performing minimization step: 961. Total energy = 16376.6640 kcal/mol (16371.2419 without restraints) Performing minimization step: 962. Total energy = 16366.1702 kcal/mol (16360.7505 without restraints) Performing minimization step: 963. Total energy = 16355.6922 kcal/mol (16350.2748 without restraints) Performing minimization step: 964. Total energy = 16345.2297 kcal/mol (16339.8147 without restraints) Performing minimization step: 965. Total energy = 16334.7833 kcal/mol (16329.3706 without restraints) Performing minimization step: 966. Total energy = 16324.3517 kcal/mol (16318.9413 without restraints) Performing minimization step: 967. Total energy = 16313.9357 kcal/mol (16308.5275 without restraints) Performing minimization step: 968. Total energy = 16303.5353 kcal/mol (16298.1295 without restraints) Performing minimization step: 969. Total energy = 16293.1505 kcal/mol (16287.7470 without restraints) Performing minimization step: 970. Total energy = 16282.7808 kcal/mol (16277.3796 without restraints) Performing minimization step: 971. Total energy = 16272.4264 kcal/mol (16267.0274 without restraints) Performing minimization step: 972. Total energy = 16262.0872 kcal/mol (16256.6906 without restraints) Performing minimization step: 973. Total energy = 16251.7633 kcal/mol (16246.3690 without restraints) Performing minimization step: 974. Total energy = 16241.4551 kcal/mol (16236.0631 without restraints) Performing minimization step: 975. Total energy = 16231.1618 kcal/mol (16225.7721 without restraints) Performing minimization step: 976. Total energy = 16220.8838 kcal/mol (16215.4963 without restraints) Performing minimization step: 977. Total energy = 16210.6209 kcal/mol (16205.2356 without restraints) Performing minimization step: 978. Total energy = 16200.3726 kcal/mol (16194.9897 without restraints) Performing minimization step: 979. Total energy = 16190.1396 kcal/mol (16184.7590 without restraints) Performing minimization step: 980. Total energy = 16179.9214 kcal/mol (16174.5430 without restraints) Performing minimization step: 981. Total energy = 16169.7183 kcal/mol (16164.3421 without restraints) Performing minimization step: 982. Total energy = 16159.5303 kcal/mol (16154.1563 without restraints) Performing minimization step: 983. Total energy = 16149.3571 kcal/mol (16143.9856 without restraints) Performing minimization step: 984. Total energy = 16139.1986 kcal/mol (16133.8291 without restraints) Performing minimization step: 985. Total energy = 16129.0547 kcal/mol (16123.6874 without restraints) Performing minimization step: 986. Total energy = 16118.9257 kcal/mol (16113.5607 without restraints) Performing minimization step: 987. Total energy = 16108.8118 kcal/mol (16103.4489 without restraints) Performing minimization step: 988. Total energy = 16098.7119 kcal/mol (16093.3513 without restraints) Performing minimization step: 989. Total energy = 16088.6272 kcal/mol (16083.2688 without restraints) Performing minimization step: 990. Total energy = 16078.5568 kcal/mol (16073.2006 without restraints) Performing minimization step: 991. Total energy = 16068.5016 kcal/mol (16063.1476 without restraints) Performing minimization step: 992. Total energy = 16058.4603 kcal/mol (16053.1085 without restraints) Performing minimization step: 993. Total energy = 16048.4336 kcal/mol (16043.0840 without restraints) Performing minimization step: 994. Total energy = 16038.4213 kcal/mol (16033.0738 without restraints) Performing minimization step: 995. Total energy = 16028.4233 kcal/mol (16023.0781 without restraints) Performing minimization step: 996. Total energy = 16018.4398 kcal/mol (16013.0968 without restraints) Performing minimization step: 997. Total energy = 16008.4706 kcal/mol (16003.1297 without restraints) Performing minimization step: 998. Total energy = 15998.5157 kcal/mol (15993.1770 without restraints) Performing minimization step: 999. Total energy = 15988.5749 kcal/mol (15983.2384 without restraints) Performing minimization step: 1000. Total energy = 15978.6485 kcal/mol (15973.3141 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 15968.7361 kcal/mol (15963.4039 without restraints) Performing minimization step: 1002. Total energy = 15958.8381 kcal/mol (15953.5079 without restraints) Performing minimization step: 1003. Total energy = 15948.9540 kcal/mol (15943.6261 without restraints) Performing minimization step: 1004. Total energy = 15939.0843 kcal/mol (15933.7586 without restraints) Performing minimization step: 1005. Total energy = 15929.2287 kcal/mol (15923.9052 without restraints) Performing minimization step: 1006. Total energy = 15919.3870 kcal/mol (15914.0655 without restraints) Performing minimization step: 1007. Total energy = 15909.5590 kcal/mol (15904.2397 without restraints) Performing minimization step: 1008. Total energy = 15899.7454 kcal/mol (15894.4283 without restraints) Performing minimization step: 1009. Total energy = 15889.9460 kcal/mol (15884.6309 without restraints) Performing minimization step: 1010. Total energy = 15880.1599 kcal/mol (15874.8470 without restraints) Performing minimization step: 1011. Total energy = 15870.3879 kcal/mol (15865.0771 without restraints) Performing minimization step: 1012. Total energy = 15860.6297 kcal/mol (15855.3210 without restraints) Performing minimization step: 1013. Total energy = 15850.8849 kcal/mol (15845.5783 without restraints) Performing minimization step: 1014. Total energy = 15841.1544 kcal/mol (15835.8501 without restraints) Performing minimization step: 1015. Total energy = 15831.4372 kcal/mol (15826.1348 without restraints) Performing minimization step: 1016. Total energy = 15821.7335 kcal/mol (15816.4331 without restraints) Performing minimization step: 1017. Total energy = 15812.0434 kcal/mol (15806.7451 without restraints) Performing minimization step: 1018. Total energy = 15802.3677 kcal/mol (15797.0715 without restraints) Performing minimization step: 1019. Total energy = 15792.7048 kcal/mol (15787.4107 without restraints) Performing minimization step: 1020. Total energy = 15783.0559 kcal/mol (15777.7640 without restraints) Performing minimization step: 1021. Total energy = 15773.4203 kcal/mol (15768.1304 without restraints) Performing minimization step: 1022. Total energy = 15763.7979 kcal/mol (15758.5101 without restraints) Performing minimization step: 1023. Total energy = 15754.1890 kcal/mol (15748.9033 without restraints) Performing minimization step: 1024. Total energy = 15744.5937 kcal/mol (15739.3101 without restraints) Performing minimization step: 1025. Total energy = 15735.0117 kcal/mol (15729.7301 without restraints) Performing minimization step: 1026. Total energy = 15725.4433 kcal/mol (15720.1639 without restraints) Performing minimization step: 1027. Total energy = 15715.8878 kcal/mol (15710.6103 without restraints) Performing minimization step: 1028. Total energy = 15706.3458 kcal/mol (15701.0704 without restraints) Performing minimization step: 1029. Total energy = 15696.8170 kcal/mol (15691.5436 without restraints) Performing minimization step: 1030. Total energy = 15687.3023 kcal/mol (15682.0308 without restraints) Performing minimization step: 1031. Total energy = 15677.7997 kcal/mol (15672.5304 without restraints) Performing minimization step: 1032. Total energy = 15668.3106 kcal/mol (15663.0433 without restraints) Performing minimization step: 1033. Total energy = 15658.8341 kcal/mol (15653.5688 without restraints) Performing minimization step: 1034. Total energy = 15649.3707 kcal/mol (15644.1075 without restraints) Performing minimization step: 1035. Total energy = 15639.9204 kcal/mol (15634.6593 without restraints) Performing minimization step: 1036. Total energy = 15630.4828 kcal/mol (15625.2236 without restraints) Performing minimization step: 1037. Total energy = 15621.0592 kcal/mol (15615.8023 without restraints) Performing minimization step: 1038. Total energy = 15611.6485 kcal/mol (15606.3933 without restraints) Performing minimization step: 1039. Total energy = 15602.2499 kcal/mol (15596.9967 without restraints) Performing minimization step: 1040. Total energy = 15592.8642 kcal/mol (15587.6131 without restraints) Performing minimization step: 1041. Total energy = 15583.4920 kcal/mol (15578.2429 without restraints) Performing minimization step: 1042. Total energy = 15574.1322 kcal/mol (15568.8850 without restraints) Performing minimization step: 1043. Total energy = 15564.7850 kcal/mol (15559.5399 without restraints) Performing minimization step: 1044. Total energy = 15555.4510 kcal/mol (15550.2079 without restraints) Performing minimization step: 1045. Total energy = 15546.1297 kcal/mol (15540.8886 without restraints) Performing minimization step: 1046. Total energy = 15536.8209 kcal/mol (15531.5817 without restraints) Performing minimization step: 1047. Total energy = 15527.5252 kcal/mol (15522.2881 without restraints) Performing minimization step: 1048. Total energy = 15518.2419 kcal/mol (15513.0069 without restraints) Performing minimization step: 1049. Total energy = 15508.9714 kcal/mol (15503.7382 without restraints) Performing minimization step: 1050. Total energy = 15499.7135 kcal/mol (15494.4823 without restraints) Performing minimization step: 1051. Total energy = 15490.4678 kcal/mol (15485.2385 without restraints) Performing minimization step: 1052. Total energy = 15481.2348 kcal/mol (15476.0075 without restraints) Performing minimization step: 1053. Total energy = 15472.0146 kcal/mol (15466.7891 without restraints) Performing minimization step: 1054. Total energy = 15462.8072 kcal/mol (15457.5838 without restraints) Performing minimization step: 1055. Total energy = 15453.6116 kcal/mol (15448.3903 without restraints) Performing minimization step: 1056. Total energy = 15444.4287 kcal/mol (15439.2093 without restraints) Performing minimization step: 1057. Total energy = 15435.2583 kcal/mol (15430.0408 without restraints) Performing minimization step: 1058. Total energy = 15426.0995 kcal/mol (15420.8838 without restraints) Performing minimization step: 1059. Total energy = 15416.9533 kcal/mol (15411.7396 without restraints) Performing minimization step: 1060. Total energy = 15407.8196 kcal/mol (15402.6079 without restraints) Performing minimization step: 1061. Total energy = 15398.6979 kcal/mol (15393.4882 without restraints) Performing minimization step: 1062. Total energy = 15389.5884 kcal/mol (15384.3805 without restraints) Performing minimization step: 1063. Total energy = 15380.4910 kcal/mol (15375.2850 without restraints) Performing minimization step: 1064. Total energy = 15371.4060 kcal/mol (15366.2020 without restraints) Performing minimization step: 1065. Total energy = 15362.3333 kcal/mol (15357.1312 without restraints) Performing minimization step: 1066. Total energy = 15353.2728 kcal/mol (15348.0728 without restraints) Performing minimization step: 1067. Total energy = 15344.2245 kcal/mol (15339.0263 without restraints) Performing minimization step: 1068. Total energy = 15335.1880 kcal/mol (15329.9917 without restraints) Performing minimization step: 1069. Total energy = 15326.1632 kcal/mol (15320.9686 without restraints) Performing minimization step: 1070. Total energy = 15317.1506 kcal/mol (15311.9582 without restraints) Performing minimization step: 1071. Total energy = 15308.1500 kcal/mol (15302.9591 without restraints) Performing minimization step: 1072. Total energy = 15299.1612 kcal/mol (15293.9724 without restraints) Performing minimization step: 1073. Total energy = 15290.1845 kcal/mol (15284.9977 without restraints) Performing minimization step: 1074. Total energy = 15281.2200 kcal/mol (15276.0349 without restraints) Performing minimization step: 1075. Total energy = 15272.2669 kcal/mol (15267.0838 without restraints) Performing minimization step: 1076. Total energy = 15263.3256 kcal/mol (15258.1444 without restraints) Performing minimization step: 1077. Total energy = 15254.3967 kcal/mol (15249.2175 without restraints) Performing minimization step: 1078. Total energy = 15245.4794 kcal/mol (15240.3020 without restraints) Performing minimization step: 1079. Total energy = 15236.5737 kcal/mol (15231.3982 without restraints) Performing minimization step: 1080. Total energy = 15227.6800 kcal/mol (15222.5063 without restraints) Performing minimization step: 1081. Total energy = 15218.7975 kcal/mol (15213.6257 without restraints) Performing minimization step: 1082. Total energy = 15209.9271 kcal/mol (15204.7573 without restraints) Performing minimization step: 1083. Total energy = 15201.0684 kcal/mol (15195.9003 without restraints) Performing minimization step: 1084. Total energy = 15192.2216 kcal/mol (15187.0555 without restraints) Performing minimization step: 1085. Total energy = 15183.3867 kcal/mol (15178.2223 without restraints) Performing minimization step: 1086. Total energy = 15174.5626 kcal/mol (15169.4001 without restraints) Performing minimization step: 1087. Total energy = 15165.7497 kcal/mol (15160.5890 without restraints) Performing minimization step: 1088. Total energy = 15156.9489 kcal/mol (15151.7900 without restraints) Performing minimization step: 1089. Total energy = 15148.1593 kcal/mol (15143.0023 without restraints) Performing minimization step: 1090. Total energy = 15139.3811 kcal/mol (15134.2260 without restraints) Performing minimization step: 1091. Total energy = 15130.6147 kcal/mol (15125.4614 without restraints) Performing minimization step: 1092. Total energy = 15121.8596 kcal/mol (15116.7081 without restraints) Performing minimization step: 1093. Total energy = 15113.1161 kcal/mol (15107.9664 without restraints) Performing minimization step: 1094. Total energy = 15104.3837 kcal/mol (15099.2359 without restraints) Performing minimization step: 1095. Total energy = 15095.6627 kcal/mol (15090.5167 without restraints) Performing minimization step: 1096. Total energy = 15086.9528 kcal/mol (15081.8086 without restraints) Performing minimization step: 1097. Total energy = 15078.2546 kcal/mol (15073.1124 without restraints) Performing minimization step: 1098. Total energy = 15069.5672 kcal/mol (15064.4266 without restraints) Performing minimization step: 1099. Total energy = 15060.8913 kcal/mol (15055.7526 without restraints) Performing minimization step: 1100. Total energy = 15052.2265 kcal/mol (15047.0895 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 15043.5730 kcal/mol (15038.4378 without restraints) Performing minimization step: 1102. Total energy = 15034.9306 kcal/mol (15029.7973 without restraints) Performing minimization step: 1103. Total energy = 15026.2996 kcal/mol (15021.1680 without restraints) Performing minimization step: 1104. Total energy = 15017.6793 kcal/mol (15012.5497 without restraints) Performing minimization step: 1105. Total energy = 15009.0706 kcal/mol (15003.9428 without restraints) Performing minimization step: 1106. Total energy = 15000.4729 kcal/mol (14995.3468 without restraints) Performing minimization step: 1107. Total energy = 14991.8860 kcal/mol (14986.7616 without restraints) Performing minimization step: 1108. Total energy = 14983.3105 kcal/mol (14978.1881 without restraints) Performing minimization step: 1109. Total energy = 14974.7459 kcal/mol (14969.6251 without restraints) Performing minimization step: 1110. Total energy = 14966.1926 kcal/mol (14961.0736 without restraints) Performing minimization step: 1111. Total energy = 14957.6495 kcal/mol (14952.5323 without restraints) Performing minimization step: 1112. Total energy = 14949.1173 kcal/mol (14944.0017 without restraints) Performing minimization step: 1113. Total energy = 14940.5962 kcal/mol (14935.4825 without restraints) Performing minimization step: 1114. Total energy = 14932.0860 kcal/mol (14926.9741 without restraints) Performing minimization step: 1115. Total energy = 14923.5867 kcal/mol (14918.4766 without restraints) Performing minimization step: 1116. Total energy = 14915.0983 kcal/mol (14909.9900 without restraints) Performing minimization step: 1117. Total energy = 14906.6204 kcal/mol (14901.5139 without restraints) Performing minimization step: 1118. Total energy = 14898.1537 kcal/mol (14893.0488 without restraints) Performing minimization step: 1119. Total energy = 14889.6976 kcal/mol (14884.5945 without restraints) Performing minimization step: 1120. Total energy = 14881.2524 kcal/mol (14876.1511 without restraints) Performing minimization step: 1121. Total energy = 14872.8178 kcal/mol (14867.7182 without restraints) Performing minimization step: 1122. Total energy = 14864.3941 kcal/mol (14859.2962 without restraints) Performing minimization step: 1123. Total energy = 14855.9803 kcal/mol (14850.8841 without restraints) Performing minimization step: 1124. Total energy = 14847.5776 kcal/mol (14842.4832 without restraints) Performing minimization step: 1125. Total energy = 14839.1858 kcal/mol (14834.0932 without restraints) Performing minimization step: 1126. Total energy = 14830.8045 kcal/mol (14825.7136 without restraints) Performing minimization step: 1127. Total energy = 14822.4338 kcal/mol (14817.3449 without restraints) Performing minimization step: 1128. Total energy = 14814.0737 kcal/mol (14808.9863 without restraints) Performing minimization step: 1129. Total energy = 14805.7240 kcal/mol (14800.6383 without restraints) Performing minimization step: 1130. Total energy = 14797.3848 kcal/mol (14792.3007 without restraints) Performing minimization step: 1131. Total energy = 14789.0561 kcal/mol (14783.9737 without restraints) Performing minimization step: 1132. Total energy = 14780.7378 kcal/mol (14775.6571 without restraints) Performing minimization step: 1133. Total energy = 14772.4299 kcal/mol (14767.3511 without restraints) Performing minimization step: 1134. Total energy = 14764.1322 kcal/mol (14759.0551 without restraints) Performing minimization step: 1135. Total energy = 14755.8453 kcal/mol (14750.7699 without restraints) Performing minimization step: 1136. Total energy = 14747.5692 kcal/mol (14742.4955 without restraints) Performing minimization step: 1137. Total energy = 14739.3037 kcal/mol (14734.2316 without restraints) Performing minimization step: 1138. Total energy = 14731.0476 kcal/mol (14725.9774 without restraints) Performing minimization step: 1139. Total energy = 14722.8021 kcal/mol (14717.7336 without restraints) Performing minimization step: 1140. Total energy = 14714.5672 kcal/mol (14709.5002 without restraints) Performing minimization step: 1141. Total energy = 14706.3425 kcal/mol (14701.2774 without restraints) Performing minimization step: 1142. Total energy = 14698.1281 kcal/mol (14693.0647 without restraints) Performing minimization step: 1143. Total energy = 14689.9237 kcal/mol (14684.8620 without restraints) Performing minimization step: 1144. Total energy = 14681.7297 kcal/mol (14676.6696 without restraints) Performing minimization step: 1145. Total energy = 14673.5460 kcal/mol (14668.4877 without restraints) Performing minimization step: 1146. Total energy = 14665.3724 kcal/mol (14660.3157 without restraints) Performing minimization step: 1147. Total energy = 14657.2088 kcal/mol (14652.1538 without restraints) Performing minimization step: 1148. Total energy = 14649.0552 kcal/mol (14644.0019 without restraints) Performing minimization step: 1149. Total energy = 14640.9120 kcal/mol (14635.8603 without restraints) Performing minimization step: 1150. Total energy = 14632.7782 kcal/mol (14627.7282 without restraints) Performing minimization step: 1151. Total energy = 14624.6553 kcal/mol (14619.6069 without restraints) Performing minimization step: 1152. Total energy = 14616.5421 kcal/mol (14611.4954 without restraints) Performing minimization step: 1153. Total energy = 14608.4385 kcal/mol (14603.3935 without restraints) Performing minimization step: 1154. Total energy = 14600.3452 kcal/mol (14595.3019 without restraints) Performing minimization step: 1155. Total energy = 14592.2620 kcal/mol (14587.2203 without restraints) Performing minimization step: 1156. Total energy = 14584.1888 kcal/mol (14579.1488 without restraints) Performing minimization step: 1157. Total energy = 14576.1254 kcal/mol (14571.0871 without restraints) Performing minimization step: 1158. Total energy = 14568.0719 kcal/mol (14563.0351 without restraints) Performing minimization step: 1159. Total energy = 14560.0281 kcal/mol (14554.9929 without restraints) Performing minimization step: 1160. Total energy = 14551.9946 kcal/mol (14546.9615 without restraints) Performing minimization step: 1161. Total energy = 14543.9705 kcal/mol (14538.9386 without restraints) Performing minimization step: 1162. Total energy = 14535.9564 kcal/mol (14530.9262 without restraints) Performing minimization step: 1163. Total energy = 14527.9523 kcal/mol (14522.9239 without restraints) Performing minimization step: 1164. Total energy = 14519.9581 kcal/mol (14514.9313 without restraints) Performing minimization step: 1165. Total energy = 14511.9737 kcal/mol (14506.9485 without restraints) Performing minimization step: 1166. Total energy = 14503.9982 kcal/mol (14498.9746 without restraints) Performing minimization step: 1167. Total energy = 14496.0336 kcal/mol (14491.0117 without restraints) Performing minimization step: 1168. Total energy = 14488.0791 kcal/mol (14483.0588 without restraints) Performing minimization step: 1169. Total energy = 14480.1332 kcal/mol (14475.1145 without restraints) Performing minimization step: 1170. Total energy = 14472.1971 kcal/mol (14467.1802 without restraints) Performing minimization step: 1171. Total energy = 14464.2711 kcal/mol (14459.2557 without restraints) Performing minimization step: 1172. Total energy = 14456.3549 kcal/mol (14451.3412 without restraints) Performing minimization step: 1173. Total energy = 14448.4478 kcal/mol (14443.4354 without restraints) Performing minimization step: 1174. Total energy = 14440.5504 kcal/mol (14435.5399 without restraints) Performing minimization step: 1175. Total energy = 14432.6627 kcal/mol (14427.6537 without restraints) Performing minimization step: 1176. Total energy = 14424.7845 kcal/mol (14419.7772 without restraints) Performing minimization step: 1177. Total energy = 14416.9158 kcal/mol (14411.9099 without restraints) Performing minimization step: 1178. Total energy = 14409.0572 kcal/mol (14404.0532 without restraints) Performing minimization step: 1179. Total energy = 14401.2078 kcal/mol (14396.2054 without restraints) Performing minimization step: 1180. Total energy = 14393.3680 kcal/mol (14388.3671 without restraints) Performing minimization step: 1181. Total energy = 14385.5374 kcal/mol (14380.5381 without restraints) Performing minimization step: 1182. Total energy = 14377.7165 kcal/mol (14372.7187 without restraints) Performing minimization step: 1183. Total energy = 14369.9045 kcal/mol (14364.9082 without restraints) Performing minimization step: 1184. Total energy = 14362.1023 kcal/mol (14357.1077 without restraints) Performing minimization step: 1185. Total energy = 14354.3095 kcal/mol (14349.3166 without restraints) Performing minimization step: 1186. Total energy = 14346.5260 kcal/mol (14341.5346 without restraints) Performing minimization step: 1187. Total energy = 14338.7515 kcal/mol (14333.7617 without restraints) Performing minimization step: 1188. Total energy = 14330.9866 kcal/mol (14325.9985 without restraints) Performing minimization step: 1189. Total energy = 14323.2312 kcal/mol (14318.2449 without restraints) Performing minimization step: 1190. Total energy = 14315.4853 kcal/mol (14310.5003 without restraints) Performing minimization step: 1191. Total energy = 14307.7482 kcal/mol (14302.7648 without restraints) Performing minimization step: 1192. Total energy = 14300.0205 kcal/mol (14295.0386 without restraints) Performing minimization step: 1193. Total energy = 14292.3026 kcal/mol (14287.3224 without restraints) Performing minimization step: 1194. Total energy = 14284.5939 kcal/mol (14279.6152 without restraints) Performing minimization step: 1195. Total energy = 14276.8941 kcal/mol (14271.9169 without restraints) Performing minimization step: 1196. Total energy = 14269.2037 kcal/mol (14264.2281 without restraints) Performing minimization step: 1197. Total energy = 14261.5223 kcal/mol (14256.5483 without restraints) Performing minimization step: 1198. Total energy = 14253.8500 kcal/mol (14248.8774 without restraints) Performing minimization step: 1199. Total energy = 14246.1866 kcal/mol (14241.2157 without restraints) Performing minimization step: 1200. Total energy = 14238.5326 kcal/mol (14233.5634 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 14230.8876 kcal/mol (14225.9199 without restraints) Performing minimization step: 1202. Total energy = 14223.2517 kcal/mol (14218.2855 without restraints) Performing minimization step: 1203. Total energy = 14215.6251 kcal/mol (14210.6605 without restraints) Performing minimization step: 1204. Total energy = 14208.0086 kcal/mol (14203.0457 without restraints) Performing minimization step: 1205. Total energy = 14200.4004 kcal/mol (14195.4389 without restraints) Performing minimization step: 1206. Total energy = 14192.8011 kcal/mol (14187.8411 without restraints) Performing minimization step: 1207. Total energy = 14185.2107 kcal/mol (14180.2523 without restraints) Performing minimization step: 1208. Total energy = 14177.6291 kcal/mol (14172.6722 without restraints) Performing minimization step: 1209. Total energy = 14170.0562 kcal/mol (14165.1009 without restraints) Performing minimization step: 1210. Total energy = 14162.4923 kcal/mol (14157.5385 without restraints) Performing minimization step: 1211. Total energy = 14154.9380 kcal/mol (14149.9857 without restraints) Performing minimization step: 1212. Total energy = 14147.3921 kcal/mol (14142.4412 without restraints) Performing minimization step: 1213. Total energy = 14139.8552 kcal/mol (14134.9060 without restraints) Performing minimization step: 1214. Total energy = 14132.3276 kcal/mol (14127.3799 without restraints) Performing minimization step: 1215. Total energy = 14124.8087 kcal/mol (14119.8625 without restraints) Performing minimization step: 1216. Total energy = 14117.2986 kcal/mol (14112.3539 without restraints) Performing minimization step: 1217. Total energy = 14109.7974 kcal/mol (14104.8544 without restraints) Performing minimization step: 1218. Total energy = 14102.3049 kcal/mol (14097.3633 without restraints) Performing minimization step: 1219. Total energy = 14094.8212 kcal/mol (14089.8812 without restraints) Performing minimization step: 1220. Total energy = 14087.3462 kcal/mol (14082.4078 without restraints) Performing minimization step: 1221. Total energy = 14079.8804 kcal/mol (14074.9434 without restraints) Performing minimization step: 1222. Total energy = 14072.4231 kcal/mol (14067.4875 without restraints) Performing minimization step: 1223. Total energy = 14064.9746 kcal/mol (14060.0406 without restraints) Performing minimization step: 1224. Total energy = 14057.5349 kcal/mol (14052.6024 without restraints) Performing minimization step: 1225. Total energy = 14050.1039 kcal/mol (14045.1730 without restraints) Performing minimization step: 1226. Total energy = 14042.6817 kcal/mol (14037.7523 without restraints) Performing minimization step: 1227. Total energy = 14035.2685 kcal/mol (14030.3406 without restraints) Performing minimization step: 1228. Total energy = 14027.8637 kcal/mol (14022.9373 without restraints) Performing minimization step: 1229. Total energy = 14020.4669 kcal/mol (14015.5420 without restraints) Performing minimization step: 1230. Total energy = 14013.0789 kcal/mol (14008.1555 without restraints) Performing minimization step: 1231. Total energy = 14005.6997 kcal/mol (14000.7778 without restraints) Performing minimization step: 1232. Total energy = 13998.3300 kcal/mol (13993.4095 without restraints) Performing minimization step: 1233. Total energy = 13990.9678 kcal/mol (13986.0489 without restraints) Performing minimization step: 1234. Total energy = 13983.6143 kcal/mol (13978.6969 without restraints) Performing minimization step: 1235. Total energy = 13976.2697 kcal/mol (13971.3537 without restraints) Performing minimization step: 1236. Total energy = 13968.9335 kcal/mol (13964.0192 without restraints) Performing minimization step: 1237. Total energy = 13961.6061 kcal/mol (13956.6931 without restraints) Performing minimization step: 1238. Total energy = 13954.2871 kcal/mol (13949.3756 without restraints) Performing minimization step: 1239. Total energy = 13946.9766 kcal/mol (13942.0666 without restraints) Performing minimization step: 1240. Total energy = 13939.6745 kcal/mol (13934.7661 without restraints) Performing minimization step: 1241. Total energy = 13932.3812 kcal/mol (13927.4741 without restraints) Performing minimization step: 1242. Total energy = 13925.0961 kcal/mol (13920.1906 without restraints) Performing minimization step: 1243. Total energy = 13917.8196 kcal/mol (13912.9157 without restraints) Performing minimization step: 1244. Total energy = 13910.5515 kcal/mol (13905.6489 without restraints) Performing minimization step: 1245. Total energy = 13903.2917 kcal/mol (13898.3906 without restraints) Performing minimization step: 1246. Total energy = 13896.0402 kcal/mol (13891.1404 without restraints) Performing minimization step: 1247. Total energy = 13888.7967 kcal/mol (13883.8986 without restraints) Performing minimization step: 1248. Total energy = 13881.5624 kcal/mol (13876.6656 without restraints) Performing minimization step: 1249. Total energy = 13874.3361 kcal/mol (13869.4409 without restraints) Performing minimization step: 1250. Total energy = 13867.1183 kcal/mol (13862.2246 without restraints) Performing minimization step: 1251. Total energy = 13859.9088 kcal/mol (13855.0166 without restraints) Performing minimization step: 1252. Total energy = 13852.7076 kcal/mol (13847.8167 without restraints) Performing minimization step: 1253. Total energy = 13845.5143 kcal/mol (13840.6247 without restraints) Performing minimization step: 1254. Total energy = 13838.3293 kcal/mol (13833.4413 without restraints) Performing minimization step: 1255. Total energy = 13831.1531 kcal/mol (13826.2666 without restraints) Performing minimization step: 1256. Total energy = 13823.9847 kcal/mol (13819.0995 without restraints) Performing minimization step: 1257. Total energy = 13816.8248 kcal/mol (13811.9412 without restraints) Performing minimization step: 1258. Total energy = 13809.6730 kcal/mol (13804.7908 without restraints) Performing minimization step: 1259. Total energy = 13802.5295 kcal/mol (13797.6488 without restraints) Performing minimization step: 1260. Total energy = 13795.3937 kcal/mol (13790.5144 without restraints) Performing minimization step: 1261. Total energy = 13788.2665 kcal/mol (13783.3887 without restraints) Performing minimization step: 1262. Total energy = 13781.1475 kcal/mol (13776.2711 without restraints) Performing minimization step: 1263. Total energy = 13774.0369 kcal/mol (13769.1619 without restraints) Performing minimization step: 1264. Total energy = 13766.9341 kcal/mol (13762.0606 without restraints) Performing minimization step: 1265. Total energy = 13759.8392 kcal/mol (13754.9671 without restraints) Performing minimization step: 1266. Total energy = 13752.7526 kcal/mol (13747.8820 without restraints) Performing minimization step: 1267. Total energy = 13745.6741 kcal/mol (13740.8049 without restraints) Performing minimization step: 1268. Total energy = 13738.6035 kcal/mol (13733.7358 without restraints) Performing minimization step: 1269. Total energy = 13731.5410 kcal/mol (13726.6747 without restraints) Performing minimization step: 1270. Total energy = 13724.4867 kcal/mol (13719.6218 without restraints) Performing minimization step: 1271. Total energy = 13717.4407 kcal/mol (13712.5772 without restraints) Performing minimization step: 1272. Total energy = 13710.4029 kcal/mol (13705.5409 without restraints) Performing minimization step: 1273. Total energy = 13703.3729 kcal/mol (13698.5121 without restraints) Performing minimization step: 1274. Total energy = 13696.3502 kcal/mol (13691.4911 without restraints) Performing minimization step: 1275. Total energy = 13689.3360 kcal/mol (13684.4782 without restraints) Performing minimization step: 1276. Total energy = 13682.3296 kcal/mol (13677.4730 without restraints) Performing minimization step: 1277. Total energy = 13675.3313 kcal/mol (13670.4764 without restraints) Performing minimization step: 1278. Total energy = 13668.3407 kcal/mol (13663.4872 without restraints) Performing minimization step: 1279. Total energy = 13661.3583 kcal/mol (13656.5062 without restraints) Performing minimization step: 1280. Total energy = 13654.3838 kcal/mol (13649.5331 without restraints) Performing minimization step: 1281. Total energy = 13647.4168 kcal/mol (13642.5674 without restraints) Performing minimization step: 1282. Total energy = 13640.4579 kcal/mol (13635.6099 without restraints) Performing minimization step: 1283. Total energy = 13633.5069 kcal/mol (13628.6604 without restraints) Performing minimization step: 1284. Total energy = 13626.5637 kcal/mol (13621.7187 without restraints) Performing minimization step: 1285. Total energy = 13619.6284 kcal/mol (13614.7847 without restraints) Performing minimization step: 1286. Total energy = 13612.7011 kcal/mol (13607.8588 without restraints) Performing minimization step: 1287. Total energy = 13605.7812 kcal/mol (13600.9404 without restraints) Performing minimization step: 1288. Total energy = 13598.8694 kcal/mol (13594.0300 without restraints) Performing minimization step: 1289. Total energy = 13591.9655 kcal/mol (13587.1274 without restraints) Performing minimization step: 1290. Total energy = 13585.0693 kcal/mol (13580.2327 without restraints) Performing minimization step: 1291. Total energy = 13578.1812 kcal/mol (13573.3459 without restraints) Performing minimization step: 1292. Total energy = 13571.3013 kcal/mol (13566.4676 without restraints) Performing minimization step: 1293. Total energy = 13564.4287 kcal/mol (13559.5961 without restraints) Performing minimization step: 1294. Total energy = 13557.5636 kcal/mol (13552.7325 without restraints) Performing minimization step: 1295. Total energy = 13550.7055 kcal/mol (13545.8759 without restraints) Performing minimization step: 1296. Total energy = 13543.8558 kcal/mol (13539.0275 without restraints) Performing minimization step: 1297. Total energy = 13537.0137 kcal/mol (13532.1867 without restraints) Performing minimization step: 1298. Total energy = 13530.1794 kcal/mol (13525.3539 without restraints) Performing minimization step: 1299. Total energy = 13523.3527 kcal/mol (13518.5285 without restraints) Performing minimization step: 1300. Total energy = 13516.5334 kcal/mol (13511.7106 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 13509.7223 kcal/mol (13504.9009 without restraints) Performing minimization step: 1302. Total energy = 13502.9186 kcal/mol (13498.0986 without restraints) Performing minimization step: 1303. Total energy = 13496.1224 kcal/mol (13491.3039 without restraints) Performing minimization step: 1304. Total energy = 13489.3338 kcal/mol (13484.5165 without restraints) Performing minimization step: 1305. Total energy = 13482.5526 kcal/mol (13477.7365 without restraints) Performing minimization step: 1306. Total energy = 13475.7794 kcal/mol (13470.9649 without restraints) Performing minimization step: 1307. Total energy = 13469.0137 kcal/mol (13464.2005 without restraints) Performing minimization step: 1308. Total energy = 13462.2552 kcal/mol (13457.4434 without restraints) Performing minimization step: 1309. Total energy = 13455.5045 kcal/mol (13450.6940 without restraints) Performing minimization step: 1310. Total energy = 13448.7611 kcal/mol (13443.9520 without restraints) Performing minimization step: 1311. Total energy = 13442.0259 kcal/mol (13437.2181 without restraints) Performing minimization step: 1312. Total energy = 13435.2973 kcal/mol (13430.4909 without restraints) Performing minimization step: 1313. Total energy = 13428.5760 kcal/mol (13423.7711 without restraints) Performing minimization step: 1314. Total energy = 13421.8630 kcal/mol (13417.0595 without restraints) Performing minimization step: 1315. Total energy = 13415.1575 kcal/mol (13410.3552 without restraints) Performing minimization step: 1316. Total energy = 13408.4589 kcal/mol (13403.6580 without restraints) Performing minimization step: 1317. Total energy = 13401.7677 kcal/mol (13396.9682 without restraints) Performing minimization step: 1318. Total energy = 13395.0842 kcal/mol (13390.2860 without restraints) Performing minimization step: 1319. Total energy = 13388.4086 kcal/mol (13383.6116 without restraints) Performing minimization step: 1320. Total energy = 13381.7402 kcal/mol (13376.9447 without restraints) Performing minimization step: 1321. Total energy = 13375.0789 kcal/mol (13370.2848 without restraints) Performing minimization step: 1322. Total energy = 13368.4254 kcal/mol (13363.6326 without restraints) Performing minimization step: 1323. Total energy = 13361.7787 kcal/mol (13356.9872 without restraints) Performing minimization step: 1324. Total energy = 13355.1396 kcal/mol (13350.3495 without restraints) Performing minimization step: 1325. Total energy = 13348.5077 kcal/mol (13343.7190 without restraints) Performing minimization step: 1326. Total energy = 13341.8832 kcal/mol (13337.0957 without restraints) Performing minimization step: 1327. Total energy = 13335.2660 kcal/mol (13330.4798 without restraints) Performing minimization step: 1328. Total energy = 13328.6558 kcal/mol (13323.8710 without restraints) Performing minimization step: 1329. Total energy = 13322.0531 kcal/mol (13317.2696 without restraints) Performing minimization step: 1330. Total energy = 13315.4578 kcal/mol (13310.6758 without restraints) Performing minimization step: 1331. Total energy = 13308.8698 kcal/mol (13304.0891 without restraints) Performing minimization step: 1332. Total energy = 13302.2888 kcal/mol (13297.5094 without restraints) Performing minimization step: 1333. Total energy = 13295.7152 kcal/mol (13290.9372 without restraints) Performing minimization step: 1334. Total energy = 13289.1488 kcal/mol (13284.3721 without restraints) Performing minimization step: 1335. Total energy = 13282.5893 kcal/mol (13277.8137 without restraints) Performing minimization step: 1336. Total energy = 13276.0373 kcal/mol (13271.2633 without restraints) Performing minimization step: 1337. Total energy = 13269.4928 kcal/mol (13264.7201 without restraints) Performing minimization step: 1338. Total energy = 13262.9552 kcal/mol (13258.1836 without restraints) Performing minimization step: 1339. Total energy = 13256.4249 kcal/mol (13251.6548 without restraints) Performing minimization step: 1340. Total energy = 13249.9018 kcal/mol (13245.1330 without restraints) Performing minimization step: 1341. Total energy = 13243.3857 kcal/mol (13238.6182 without restraints) Performing minimization step: 1342. Total energy = 13236.8766 kcal/mol (13232.1105 without restraints) Performing minimization step: 1343. Total energy = 13230.3750 kcal/mol (13225.6102 without restraints) Performing minimization step: 1344. Total energy = 13223.8809 kcal/mol (13219.1173 without restraints) Performing minimization step: 1345. Total energy = 13217.3934 kcal/mol (13212.6312 without restraints) Performing minimization step: 1346. Total energy = 13210.9127 kcal/mol (13206.1518 without restraints) Performing minimization step: 1347. Total energy = 13204.4396 kcal/mol (13199.6802 without restraints) Performing minimization step: 1348. Total energy = 13197.9735 kcal/mol (13193.2152 without restraints) Performing minimization step: 1349. Total energy = 13191.5139 kcal/mol (13186.7570 without restraints) Performing minimization step: 1350. Total energy = 13185.0618 kcal/mol (13180.3062 without restraints) Performing minimization step: 1351. Total energy = 13178.6169 kcal/mol (13173.8625 without restraints) Performing minimization step: 1352. Total energy = 13172.1789 kcal/mol (13167.4258 without restraints) Performing minimization step: 1353. Total energy = 13165.7483 kcal/mol (13160.9965 without restraints) Performing minimization step: 1354. Total energy = 13159.3238 kcal/mol (13154.5733 without restraints) Performing minimization step: 1355. Total energy = 13152.9065 kcal/mol (13148.1573 without restraints) Performing minimization step: 1356. Total energy = 13146.4966 kcal/mol (13141.7488 without restraints) Performing minimization step: 1357. Total energy = 13140.0934 kcal/mol (13135.3468 without restraints) Performing minimization step: 1358. Total energy = 13133.6974 kcal/mol (13128.9521 without restraints) Performing minimization step: 1359. Total energy = 13127.3083 kcal/mol (13122.5644 without restraints) Performing minimization step: 1360. Total energy = 13120.9260 kcal/mol (13116.1833 without restraints) Performing minimization step: 1361. Total energy = 13114.5505 kcal/mol (13109.8090 without restraints) Performing minimization step: 1362. Total energy = 13108.1824 kcal/mol (13103.4425 without restraints) Performing minimization step: 1363. Total energy = 13101.8211 kcal/mol (13097.0823 without restraints) Performing minimization step: 1364. Total energy = 13095.4663 kcal/mol (13090.7288 without restraints) Performing minimization step: 1365. Total energy = 13089.1186 kcal/mol (13084.3824 without restraints) Performing minimization step: 1366. Total energy = 13082.7778 kcal/mol (13078.0429 without restraints) Performing minimization step: 1367. Total energy = 13076.4438 kcal/mol (13071.7102 without restraints) Performing minimization step: 1368. Total energy = 13070.1169 kcal/mol (13065.3846 without restraints) Performing minimization step: 1369. Total energy = 13063.7965 kcal/mol (13059.0654 without restraints) Performing minimization step: 1370. Total energy = 13057.4831 kcal/mol (13052.7535 without restraints) Performing minimization step: 1371. Total energy = 13051.1770 kcal/mol (13046.4485 without restraints) Performing minimization step: 1372. Total energy = 13044.8774 kcal/mol (13040.1502 without restraints) Performing minimization step: 1373. Total energy = 13038.5843 kcal/mol (13033.8584 without restraints) Performing minimization step: 1374. Total energy = 13032.2982 kcal/mol (13027.5735 without restraints) Performing minimization step: 1375. Total energy = 13026.0188 kcal/mol (13021.2955 without restraints) Performing minimization step: 1376. Total energy = 13019.7464 kcal/mol (13015.0243 without restraints) Performing minimization step: 1377. Total energy = 13013.4801 kcal/mol (13008.7593 without restraints) Performing minimization step: 1378. Total energy = 13007.2205 kcal/mol (13002.5010 without restraints) Performing minimization step: 1379. Total energy = 13000.9689 kcal/mol (12996.2506 without restraints) Performing minimization step: 1380. Total energy = 12994.7240 kcal/mol (12990.0070 without restraints) Performing minimization step: 1381. Total energy = 12988.4852 kcal/mol (12983.7695 without restraints) Performing minimization step: 1382. Total energy = 12982.2534 kcal/mol (12977.5389 without restraints) Performing minimization step: 1383. Total energy = 12976.0281 kcal/mol (12971.3150 without restraints) Performing minimization step: 1384. Total energy = 12969.8094 kcal/mol (12965.0974 without restraints) Performing minimization step: 1385. Total energy = 12963.5972 kcal/mol (12958.8865 without restraints) Performing minimization step: 1386. Total energy = 12957.3919 kcal/mol (12952.6824 without restraints) Performing minimization step: 1387. Total energy = 12951.1933 kcal/mol (12946.4851 without restraints) Performing minimization step: 1388. Total energy = 12945.0017 kcal/mol (12940.2949 without restraints) Performing minimization step: 1389. Total energy = 12938.8157 kcal/mol (12934.1100 without restraints) Performing minimization step: 1390. Total energy = 12932.6362 kcal/mol (12927.9317 without restraints) Performing minimization step: 1391. Total energy = 12926.4639 kcal/mol (12921.7609 without restraints) Performing minimization step: 1392. Total energy = 12920.2984 kcal/mol (12915.5965 without restraints) Performing minimization step: 1393. Total energy = 12914.1393 kcal/mol (12909.4387 without restraints) Performing minimization step: 1394. Total energy = 12907.9866 kcal/mol (12903.2872 without restraints) Performing minimization step: 1395. Total energy = 12901.8406 kcal/mol (12897.1424 without restraints) Performing minimization step: 1396. Total energy = 12895.7013 kcal/mol (12891.0044 without restraints) Performing minimization step: 1397. Total energy = 12889.5686 kcal/mol (12884.8729 without restraints) Performing minimization step: 1398. Total energy = 12883.4423 kcal/mol (12878.7479 without restraints) Performing minimization step: 1399. Total energy = 12877.3229 kcal/mol (12872.6298 without restraints) Performing minimization step: 1400. Total energy = 12871.2102 kcal/mol (12866.5183 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 12865.1040 kcal/mol (12860.4133 without restraints) Performing minimization step: 1402. Total energy = 12859.0033 kcal/mol (12854.3139 without restraints) Performing minimization step: 1403. Total energy = 12852.9099 kcal/mol (12848.2216 without restraints) Performing minimization step: 1404. Total energy = 12846.8226 kcal/mol (12842.1355 without restraints) Performing minimization step: 1405. Total energy = 12840.7422 kcal/mol (12836.0565 without restraints) Performing minimization step: 1406. Total energy = 12834.6683 kcal/mol (12829.9839 without restraints) Performing minimization step: 1407. Total energy = 12828.6009 kcal/mol (12823.9177 without restraints) Performing minimization step: 1408. Total energy = 12822.5395 kcal/mol (12817.8574 without restraints) Performing minimization step: 1409. Total energy = 12816.4843 kcal/mol (12811.8035 without restraints) Performing minimization step: 1410. Total energy = 12810.4358 kcal/mol (12805.7561 without restraints) Performing minimization step: 1411. Total energy = 12804.3934 kcal/mol (12799.7149 without restraints) Performing minimization step: 1412. Total energy = 12798.3576 kcal/mol (12793.6805 without restraints) Performing minimization step: 1413. Total energy = 12792.3287 kcal/mol (12787.6530 without restraints) Performing minimization step: 1414. Total energy = 12786.3059 kcal/mol (12781.6311 without restraints) Performing minimization step: 1415. Total energy = 12780.2901 kcal/mol (12775.6168 without restraints) Performing minimization step: 1416. Total energy = 12774.2804 kcal/mol (12769.6082 without restraints) Performing minimization step: 1417. Total energy = 12768.2766 kcal/mol (12763.6056 without restraints) Performing minimization step: 1418. Total energy = 12762.2793 kcal/mol (12757.6095 without restraints) Performing minimization step: 1419. Total energy = 12756.2879 kcal/mol (12751.6194 without restraints) Performing minimization step: 1420. Total energy = 12750.3030 kcal/mol (12745.6357 without restraints) Performing minimization step: 1421. Total energy = 12744.3248 kcal/mol (12739.6587 without restraints) Performing minimization step: 1422. Total energy = 12738.3526 kcal/mol (12733.6878 without restraints) Performing minimization step: 1423. Total energy = 12732.3870 kcal/mol (12727.7232 without restraints) Performing minimization step: 1424. Total energy = 12726.4273 kcal/mol (12721.7649 without restraints) Performing minimization step: 1425. Total energy = 12720.4741 kcal/mol (12715.8129 without restraints) Performing minimization step: 1426. Total energy = 12714.5273 kcal/mol (12709.8673 without restraints) Performing minimization step: 1427. Total energy = 12708.5865 kcal/mol (12703.9278 without restraints) Performing minimization step: 1428. Total energy = 12702.6523 kcal/mol (12697.9947 without restraints) Performing minimization step: 1429. Total energy = 12696.7244 kcal/mol (12692.0680 without restraints) Performing minimization step: 1430. Total energy = 12690.8029 kcal/mol (12686.1479 without restraints) Performing minimization step: 1431. Total energy = 12684.8875 kcal/mol (12680.2335 without restraints) Performing minimization step: 1432. Total energy = 12678.9786 kcal/mol (12674.3259 without restraints) Performing minimization step: 1433. Total energy = 12673.0749 kcal/mol (12668.4234 without restraints) Performing minimization step: 1434. Total energy = 12667.1783 kcal/mol (12662.5280 without restraints) Performing minimization step: 1435. Total energy = 12661.2877 kcal/mol (12656.6385 without restraints) Performing minimization step: 1436. Total energy = 12655.4033 kcal/mol (12650.7554 without restraints) Performing minimization step: 1437. Total energy = 12649.5250 kcal/mol (12644.8783 without restraints) Performing minimization step: 1438. Total energy = 12643.6526 kcal/mol (12639.0071 without restraints) Performing minimization step: 1439. Total energy = 12637.7868 kcal/mol (12633.1425 without restraints) Performing minimization step: 1440. Total energy = 12631.9269 kcal/mol (12627.2838 without restraints) Performing minimization step: 1441. Total energy = 12626.0732 kcal/mol (12621.4313 without restraints) Performing minimization step: 1442. Total energy = 12620.2255 kcal/mol (12615.5848 without restraints) Performing minimization step: 1443. Total energy = 12614.3843 kcal/mol (12609.7448 without restraints) Performing minimization step: 1444. Total energy = 12608.5485 kcal/mol (12603.9100 without restraints) Performing minimization step: 1445. Total energy = 12602.7191 kcal/mol (12598.0820 without restraints) Performing minimization step: 1446. Total energy = 12596.8961 kcal/mol (12592.2603 without restraints) Performing minimization step: 1447. Total energy = 12591.0790 kcal/mol (12586.4442 without restraints) Performing minimization step: 1448. Total energy = 12585.2681 kcal/mol (12580.6345 without restraints) Performing minimization step: 1449. Total energy = 12579.4630 kcal/mol (12574.8306 without restraints) Performing minimization step: 1450. Total energy = 12573.6636 kcal/mol (12569.0324 without restraints) Performing minimization step: 1451. Total energy = 12567.8709 kcal/mol (12563.2409 without restraints) Performing minimization step: 1452. Total energy = 12562.0848 kcal/mol (12557.4561 without restraints) Performing minimization step: 1453. Total energy = 12556.3042 kcal/mol (12551.6764 without restraints) Performing minimization step: 1454. Total energy = 12550.5291 kcal/mol (12545.9026 without restraints) Performing minimization step: 1455. Total energy = 12544.7602 kcal/mol (12540.1349 without restraints) Performing minimization step: 1456. Total energy = 12538.9974 kcal/mol (12534.3732 without restraints) Performing minimization step: 1457. Total energy = 12533.2405 kcal/mol (12528.6176 without restraints) Performing minimization step: 1458. Total energy = 12527.4898 kcal/mol (12522.8681 without restraints) Performing minimization step: 1459. Total energy = 12521.7453 kcal/mol (12517.1247 without restraints) Performing minimization step: 1460. Total energy = 12516.0071 kcal/mol (12511.3877 without restraints) Performing minimization step: 1461. Total energy = 12510.2741 kcal/mol (12505.6558 without restraints) Performing minimization step: 1462. Total energy = 12504.5474 kcal/mol (12499.9304 without restraints) Performing minimization step: 1463. Total energy = 12498.8266 kcal/mol (12494.2107 without restraints) Performing minimization step: 1464. Total energy = 12493.1114 kcal/mol (12488.4967 without restraints) Performing minimization step: 1465. Total energy = 12487.4024 kcal/mol (12482.7889 without restraints) Performing minimization step: 1466. Total energy = 12481.6995 kcal/mol (12477.0870 without restraints) Performing minimization step: 1467. Total energy = 12476.0022 kcal/mol (12471.3910 without restraints) Performing minimization step: 1468. Total energy = 12470.3117 kcal/mol (12465.7017 without restraints) Performing minimization step: 1469. Total energy = 12464.6266 kcal/mol (12460.0178 without restraints) Performing minimization step: 1470. Total energy = 12458.9472 kcal/mol (12454.3395 without restraints) Performing minimization step: 1471. Total energy = 12453.2731 kcal/mol (12448.6666 without restraints) Performing minimization step: 1472. Total energy = 12447.6057 kcal/mol (12443.0004 without restraints) Performing minimization step: 1473. Total energy = 12441.9437 kcal/mol (12437.3395 without restraints) Performing minimization step: 1474. Total energy = 12436.2874 kcal/mol (12431.6843 without restraints) Performing minimization step: 1475. Total energy = 12430.6372 kcal/mol (12426.0353 without restraints) Performing minimization step: 1476. Total energy = 12424.9933 kcal/mol (12420.3925 without restraints) Performing minimization step: 1477. Total energy = 12419.3547 kcal/mol (12414.7551 without restraints) Performing minimization step: 1478. Total energy = 12413.7216 kcal/mol (12409.1231 without restraints) Performing minimization step: 1479. Total energy = 12408.0949 kcal/mol (12403.4976 without restraints) Performing minimization step: 1480. Total energy = 12402.4737 kcal/mol (12397.8775 without restraints) Performing minimization step: 1481. Total energy = 12396.8579 kcal/mol (12392.2630 without restraints) Performing minimization step: 1482. Total energy = 12391.2482 kcal/mol (12386.6544 without restraints) Performing minimization step: 1483. Total energy = 12385.6445 kcal/mol (12381.0518 without restraints) Performing minimization step: 1484. Total energy = 12380.0466 kcal/mol (12375.4552 without restraints) Performing minimization step: 1485. Total energy = 12374.4543 kcal/mol (12369.8639 without restraints) Performing minimization step: 1486. Total energy = 12368.8677 kcal/mol (12364.2784 without restraints) Performing minimization step: 1487. Total energy = 12363.2874 kcal/mol (12358.6993 without restraints) Performing minimization step: 1488. Total energy = 12357.7123 kcal/mol (12353.1254 without restraints) Performing minimization step: 1489. Total energy = 12352.1432 kcal/mol (12347.5574 without restraints) Performing minimization step: 1490. Total energy = 12346.5795 kcal/mol (12341.9949 without restraints) Performing minimization step: 1491. Total energy = 12341.0217 kcal/mol (12336.4382 without restraints) Performing minimization step: 1492. Total energy = 12335.4693 kcal/mol (12330.8869 without restraints) Performing minimization step: 1493. Total energy = 12329.9238 kcal/mol (12325.3426 without restraints) Performing minimization step: 1494. Total energy = 12324.3829 kcal/mol (12319.8029 without restraints) Performing minimization step: 1495. Total energy = 12318.8475 kcal/mol (12314.2685 without restraints) Performing minimization step: 1496. Total energy = 12313.3180 kcal/mol (12308.7402 without restraints) Performing minimization step: 1497. Total energy = 12307.7942 kcal/mol (12303.2176 without restraints) Performing minimization step: 1498. Total energy = 12302.2761 kcal/mol (12297.7005 without restraints) Performing minimization step: 1499. Total energy = 12296.7635 kcal/mol (12292.1891 without restraints) Performing minimization step: 1500. Total energy = 12291.2569 kcal/mol (12286.6836 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 12285.7556 kcal/mol (12281.1834 without restraints) Performing minimization step: 1502. Total energy = 12280.2602 kcal/mol (12275.6892 without restraints) Performing minimization step: 1503. Total energy = 12274.7706 kcal/mol (12270.2007 without restraints) Performing minimization step: 1504. Total energy = 12269.2861 kcal/mol (12264.7174 without restraints) Performing minimization step: 1505. Total energy = 12263.8076 kcal/mol (12259.2402 without restraints) Performing minimization step: 1506. Total energy = 12258.3345 kcal/mol (12253.7680 without restraints) Performing minimization step: 1507. Total energy = 12252.8673 kcal/mol (12248.3019 without restraints) Performing minimization step: 1508. Total energy = 12247.4059 kcal/mol (12242.8416 without restraints) Performing minimization step: 1509. Total energy = 12241.9492 kcal/mol (12237.3860 without restraints) Performing minimization step: 1510. Total energy = 12236.4978 kcal/mol (12231.9358 without restraints) Performing minimization step: 1511. Total energy = 12231.0525 kcal/mol (12226.4916 without restraints) Performing minimization step: 1512. Total energy = 12225.6133 kcal/mol (12221.0536 without restraints) Performing minimization step: 1513. Total energy = 12220.1789 kcal/mol (12215.6204 without restraints) Performing minimization step: 1514. Total energy = 12214.7502 kcal/mol (12210.1927 without restraints) Performing minimization step: 1515. Total energy = 12209.3269 kcal/mol (12204.7705 without restraints) Performing minimization step: 1516. Total energy = 12203.9095 kcal/mol (12199.3541 without restraints) Performing minimization step: 1517. Total energy = 12198.4972 kcal/mol (12193.9431 without restraints) Performing minimization step: 1518. Total energy = 12193.0907 kcal/mol (12188.5376 without restraints) Performing minimization step: 1519. Total energy = 12187.6895 kcal/mol (12183.1375 without restraints) Performing minimization step: 1520. Total energy = 12182.2937 kcal/mol (12177.7430 without restraints) Performing minimization step: 1521. Total energy = 12176.9030 kcal/mol (12172.3530 without restraints) Performing minimization step: 1522. Total energy = 12171.5178 kcal/mol (12166.9692 without restraints) Performing minimization step: 1523. Total energy = 12166.1383 kcal/mol (12161.5908 without restraints) Performing minimization step: 1524. Total energy = 12160.7642 kcal/mol (12156.2178 without restraints) Performing minimization step: 1525. Total energy = 12155.3952 kcal/mol (12150.8499 without restraints) Performing minimization step: 1526. Total energy = 12150.0323 kcal/mol (12145.4882 without restraints) Performing minimization step: 1527. Total energy = 12144.6750 kcal/mol (12140.1319 without restraints) Performing minimization step: 1528. Total energy = 12139.3228 kcal/mol (12134.7808 without restraints) Performing minimization step: 1529. Total energy = 12133.9760 kcal/mol (12129.4352 without restraints) Performing minimization step: 1530. Total energy = 12128.6340 kcal/mol (12124.0943 without restraints) Performing minimization step: 1531. Total energy = 12123.2980 kcal/mol (12118.7594 without restraints) Performing minimization step: 1532. Total energy = 12117.9673 kcal/mol (12113.4298 without restraints) Performing minimization step: 1533. Total energy = 12112.6421 kcal/mol (12108.1057 without restraints) Performing minimization step: 1534. Total energy = 12107.3219 kcal/mol (12102.7864 without restraints) Performing minimization step: 1535. Total energy = 12102.0068 kcal/mol (12097.4725 without restraints) Performing minimization step: 1536. Total energy = 12096.6978 kcal/mol (12092.1646 without restraints) Performing minimization step: 1537. Total energy = 12091.3938 kcal/mol (12086.8618 without restraints) Performing minimization step: 1538. Total energy = 12086.0951 kcal/mol (12081.5640 without restraints) Performing minimization step: 1539. Total energy = 12080.8016 kcal/mol (12076.2717 without restraints) Performing minimization step: 1540. Total energy = 12075.5135 kcal/mol (12070.9847 without restraints) Performing minimization step: 1541. Total energy = 12070.2308 kcal/mol (12065.7032 without restraints) Performing minimization step: 1542. Total energy = 12064.9534 kcal/mol (12060.4268 without restraints) Performing minimization step: 1543. Total energy = 12059.6808 kcal/mol (12055.1553 without restraints) Performing minimization step: 1544. Total energy = 12054.4139 kcal/mol (12049.8895 without restraints) Performing minimization step: 1545. Total energy = 12049.1524 kcal/mol (12044.6291 without restraints) Performing minimization step: 1546. Total energy = 12043.8965 kcal/mol (12039.3741 without restraints) Performing minimization step: 1547. Total energy = 12038.6451 kcal/mol (12034.1239 without restraints) Performing minimization step: 1548. Total energy = 12033.3993 kcal/mol (12028.8792 without restraints) Performing minimization step: 1549. Total energy = 12028.1589 kcal/mol (12023.6398 without restraints) Performing minimization step: 1550. Total energy = 12022.9237 kcal/mol (12018.4059 without restraints) Performing minimization step: 1551. Total energy = 12017.6936 kcal/mol (12013.1766 without restraints) Performing minimization step: 1552. Total energy = 12012.4686 kcal/mol (12007.9528 without restraints) Performing minimization step: 1553. Total energy = 12007.2487 kcal/mol (12002.7340 without restraints) Performing minimization step: 1554. Total energy = 12002.0346 kcal/mol (11997.5210 without restraints) Performing minimization step: 1555. Total energy = 11996.8255 kcal/mol (11992.3130 without restraints) Performing minimization step: 1556. Total energy = 11991.6213 kcal/mol (11987.1098 without restraints) Performing minimization step: 1557. Total energy = 11986.4224 kcal/mol (11981.9121 without restraints) Performing minimization step: 1558. Total energy = 11981.2288 kcal/mol (11976.7194 without restraints) Performing minimization step: 1559. Total energy = 11976.0399 kcal/mol (11971.5317 without restraints) Performing minimization step: 1560. Total energy = 11970.8566 kcal/mol (11966.3494 without restraints) Performing minimization step: 1561. Total energy = 11965.6781 kcal/mol (11961.1720 without restraints) Performing minimization step: 1562. Total energy = 11960.5049 kcal/mol (11956.0000 without restraints) Performing minimization step: 1563. Total energy = 11955.3372 kcal/mol (11950.8333 without restraints) Performing minimization step: 1564. Total energy = 11950.1745 kcal/mol (11945.6718 without restraints) Performing minimization step: 1565. Total energy = 11945.0171 kcal/mol (11940.5154 without restraints) Performing minimization step: 1566. Total energy = 11939.8647 kcal/mol (11935.3639 without restraints) Performing minimization step: 1567. Total energy = 11934.7175 kcal/mol (11930.2178 without restraints) Performing minimization step: 1568. Total energy = 11929.5751 kcal/mol (11925.0765 without restraints) Performing minimization step: 1569. Total energy = 11924.4378 kcal/mol (11919.9403 without restraints) Performing minimization step: 1570. Total energy = 11919.3061 kcal/mol (11914.8098 without restraints) Performing minimization step: 1571. Total energy = 11914.1791 kcal/mol (11909.6837 without restraints) Performing minimization step: 1572. Total energy = 11909.0571 kcal/mol (11904.5627 without restraints) Performing minimization step: 1573. Total energy = 11903.9396 kcal/mol (11899.4462 without restraints) Performing minimization step: 1574. Total energy = 11898.8275 kcal/mol (11894.3353 without restraints) Performing minimization step: 1575. Total energy = 11893.7204 kcal/mol (11889.2292 without restraints) Performing minimization step: 1576. Total energy = 11888.6188 kcal/mol (11884.1286 without restraints) Performing minimization step: 1577. Total energy = 11883.5222 kcal/mol (11879.0331 without restraints) Performing minimization step: 1578. Total energy = 11878.4305 kcal/mol (11873.9424 without restraints) Performing minimization step: 1579. Total energy = 11873.3436 kcal/mol (11868.8567 without restraints) Performing minimization step: 1580. Total energy = 11868.2624 kcal/mol (11863.7766 without restraints) Performing minimization step: 1581. Total energy = 11863.1858 kcal/mol (11858.7009 without restraints) Performing minimization step: 1582. Total energy = 11858.1140 kcal/mol (11853.6302 without restraints) Performing minimization step: 1583. Total energy = 11853.0474 kcal/mol (11848.5645 without restraints) Performing minimization step: 1584. Total energy = 11847.9855 kcal/mol (11843.5038 without restraints) Performing minimization step: 1585. Total energy = 11842.9287 kcal/mol (11838.4480 without restraints) Performing minimization step: 1586. Total energy = 11837.8770 kcal/mol (11833.3974 without restraints) Performing minimization step: 1587. Total energy = 11832.8305 kcal/mol (11828.3519 without restraints) Performing minimization step: 1588. Total energy = 11827.7888 kcal/mol (11823.3113 without restraints) Performing minimization step: 1589. Total energy = 11822.7525 kcal/mol (11818.2760 without restraints) Performing minimization step: 1590. Total energy = 11817.7204 kcal/mol (11813.2450 without restraints) Performing minimization step: 1591. Total energy = 11812.6939 kcal/mol (11808.2195 without restraints) Performing minimization step: 1592. Total energy = 11807.6718 kcal/mol (11803.1985 without restraints) Performing minimization step: 1593. Total energy = 11802.6545 kcal/mol (11798.1823 without restraints) Performing minimization step: 1594. Total energy = 11797.6419 kcal/mol (11793.1707 without restraints) Performing minimization step: 1595. Total energy = 11792.6344 kcal/mol (11788.1641 without restraints) Performing minimization step: 1596. Total energy = 11787.6318 kcal/mol (11783.1626 without restraints) Performing minimization step: 1597. Total energy = 11782.6341 kcal/mol (11778.1659 without restraints) Performing minimization step: 1598. Total energy = 11777.6412 kcal/mol (11773.1741 without restraints) Performing minimization step: 1599. Total energy = 11772.6537 kcal/mol (11768.1878 without restraints) Performing minimization step: 1600. Total energy = 11767.6707 kcal/mol (11763.2057 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 11762.6926 kcal/mol (11758.2286 without restraints) Performing minimization step: 1602. Total energy = 11757.7194 kcal/mol (11753.2564 without restraints) Performing minimization step: 1603. Total energy = 11752.7508 kcal/mol (11748.2886 without restraints) Performing minimization step: 1604. Total energy = 11747.7868 kcal/mol (11743.3259 without restraints) Performing minimization step: 1605. Total energy = 11742.8279 kcal/mol (11738.3680 without restraints) Performing minimization step: 1606. Total energy = 11737.8741 kcal/mol (11733.4154 without restraints) Performing minimization step: 1607. Total energy = 11732.9249 kcal/mol (11728.4671 without restraints) Performing minimization step: 1608. Total energy = 11727.9804 kcal/mol (11723.5236 without restraints) Performing minimization step: 1609. Total energy = 11723.0406 kcal/mol (11718.5847 without restraints) Performing minimization step: 1610. Total energy = 11718.1057 kcal/mol (11713.6510 without restraints) Performing minimization step: 1611. Total energy = 11713.1757 kcal/mol (11708.7219 without restraints) Performing minimization step: 1612. Total energy = 11708.2506 kcal/mol (11703.7979 without restraints) Performing minimization step: 1613. Total energy = 11703.3302 kcal/mol (11698.8785 without restraints) Performing minimization step: 1614. Total energy = 11698.4145 kcal/mol (11693.9639 without restraints) Performing minimization step: 1615. Total energy = 11693.5034 kcal/mol (11689.0538 without restraints) Performing minimization step: 1616. Total energy = 11688.5973 kcal/mol (11684.1487 without restraints) Performing minimization step: 1617. Total energy = 11683.6957 kcal/mol (11679.2481 without restraints) Performing minimization step: 1618. Total energy = 11678.7993 kcal/mol (11674.3527 without restraints) Performing minimization step: 1619. Total energy = 11673.9069 kcal/mol (11669.4613 without restraints) Performing minimization step: 1620. Total energy = 11669.0201 kcal/mol (11664.5755 without restraints) Performing minimization step: 1621. Total energy = 11664.1370 kcal/mol (11659.6934 without restraints) Performing minimization step: 1622. Total energy = 11659.2589 kcal/mol (11654.8163 without restraints) Performing minimization step: 1623. Total energy = 11654.3858 kcal/mol (11649.9442 without restraints) Performing minimization step: 1624. Total energy = 11649.5169 kcal/mol (11645.0763 without restraints) Performing minimization step: 1625. Total energy = 11644.6528 kcal/mol (11640.2132 without restraints) Performing minimization step: 1626. Total energy = 11639.7938 kcal/mol (11635.3553 without restraints) Performing minimization step: 1627. Total energy = 11634.9390 kcal/mol (11630.5014 without restraints) Performing minimization step: 1628. Total energy = 11630.0889 kcal/mol (11625.6522 without restraints) Performing minimization step: 1629. Total energy = 11625.2436 kcal/mol (11620.8080 without restraints) Performing minimization step: 1630. Total energy = 11620.4033 kcal/mol (11615.9689 without restraints) Performing minimization step: 1631. Total energy = 11615.5673 kcal/mol (11611.1338 without restraints) Performing minimization step: 1632. Total energy = 11610.7363 kcal/mol (11606.3039 without restraints) Performing minimization step: 1633. Total energy = 11605.9098 kcal/mol (11601.4783 without restraints) Performing minimization step: 1634. Total energy = 11601.0879 kcal/mol (11596.6575 without restraints) Performing minimization step: 1635. Total energy = 11596.2708 kcal/mol (11591.8413 without restraints) Performing minimization step: 1636. Total energy = 11591.4577 kcal/mol (11587.0292 without restraints) Performing minimization step: 1637. Total energy = 11586.6491 kcal/mol (11582.2216 without restraints) Performing minimization step: 1638. Total energy = 11581.8455 kcal/mol (11577.4190 without restraints) Performing minimization step: 1639. Total energy = 11577.0469 kcal/mol (11572.6215 without restraints) Performing minimization step: 1640. Total energy = 11572.2522 kcal/mol (11567.8277 without restraints) Performing minimization step: 1641. Total energy = 11567.4625 kcal/mol (11563.0390 without restraints) Performing minimization step: 1642. Total energy = 11562.6769 kcal/mol (11558.2544 without restraints) Performing minimization step: 1643. Total energy = 11557.8959 kcal/mol (11553.4744 without restraints) Performing minimization step: 1644. Total energy = 11553.1195 kcal/mol (11548.6989 without restraints) Performing minimization step: 1645. Total energy = 11548.3475 kcal/mol (11543.9280 without restraints) Performing minimization step: 1646. Total energy = 11543.5798 kcal/mol (11539.1611 without restraints) Performing minimization step: 1647. Total energy = 11538.8166 kcal/mol (11534.3990 without restraints) Performing minimization step: 1648. Total energy = 11534.0588 kcal/mol (11529.6422 without restraints) Performing minimization step: 1649. Total energy = 11529.3044 kcal/mol (11524.8888 without restraints) Performing minimization step: 1650. Total energy = 11524.5554 kcal/mol (11520.1408 without restraints) Performing minimization step: 1651. Total energy = 11519.8102 kcal/mol (11515.3965 without restraints) Performing minimization step: 1652. Total energy = 11515.0698 kcal/mol (11510.6572 without restraints) Performing minimization step: 1653. Total energy = 11510.3339 kcal/mol (11505.9223 without restraints) Performing minimization step: 1654. Total energy = 11505.6028 kcal/mol (11501.1922 without restraints) Performing minimization step: 1655. Total energy = 11500.8757 kcal/mol (11496.4660 without restraints) Performing minimization step: 1656. Total energy = 11496.1527 kcal/mol (11491.7438 without restraints) Performing minimization step: 1657. Total energy = 11491.4344 kcal/mol (11487.0266 without restraints) Performing minimization step: 1658. Total energy = 11486.7211 kcal/mol (11482.3144 without restraints) Performing minimization step: 1659. Total energy = 11482.0118 kcal/mol (11477.6060 without restraints) Performing minimization step: 1660. Total energy = 11477.3073 kcal/mol (11472.9025 without restraints) Performing minimization step: 1661. Total energy = 11472.6069 kcal/mol (11468.2029 without restraints) Performing minimization step: 1662. Total energy = 11467.9103 kcal/mol (11463.5074 without restraints) Performing minimization step: 1663. Total energy = 11463.2186 kcal/mol (11458.8167 without restraints) Performing minimization step: 1664. Total energy = 11458.5309 kcal/mol (11454.1300 without restraints) Performing minimization step: 1665. Total energy = 11453.8480 kcal/mol (11449.4480 without restraints) Performing minimization step: 1666. Total energy = 11449.1701 kcal/mol (11444.7711 without restraints) Performing minimization step: 1667. Total energy = 11444.4959 kcal/mol (11440.0979 without restraints) Performing minimization step: 1668. Total energy = 11439.8261 kcal/mol (11435.4290 without restraints) Performing minimization step: 1669. Total energy = 11435.1608 kcal/mol (11430.7646 without restraints) Performing minimization step: 1670. Total energy = 11430.4993 kcal/mol (11426.1041 without restraints) Performing minimization step: 1671. Total energy = 11425.8423 kcal/mol (11421.4480 without restraints) Performing minimization step: 1672. Total energy = 11421.1899 kcal/mol (11416.7967 without restraints) Performing minimization step: 1673. Total energy = 11416.5418 kcal/mol (11412.1496 without restraints) Performing minimization step: 1674. Total energy = 11411.8979 kcal/mol (11407.5066 without restraints) Performing minimization step: 1675. Total energy = 11407.2594 kcal/mol (11402.8690 without restraints) Performing minimization step: 1676. Total energy = 11402.6242 kcal/mol (11398.2349 without restraints) Performing minimization step: 1677. Total energy = 11397.9933 kcal/mol (11393.6047 without restraints) Performing minimization step: 1678. Total energy = 11393.3665 kcal/mol (11388.9790 without restraints) Performing minimization step: 1679. Total energy = 11388.7443 kcal/mol (11384.3578 without restraints) Performing minimization step: 1680. Total energy = 11384.1263 kcal/mol (11379.7408 without restraints) Performing minimization step: 1681. Total energy = 11379.5126 kcal/mol (11375.1280 without restraints) Performing minimization step: 1682. Total energy = 11374.9033 kcal/mol (11370.5196 without restraints) Performing minimization step: 1683. Total energy = 11370.2976 kcal/mol (11365.9150 without restraints) Performing minimization step: 1684. Total energy = 11365.6968 kcal/mol (11361.3151 without restraints) Performing minimization step: 1685. Total energy = 11361.1001 kcal/mol (11356.7193 without restraints) Performing minimization step: 1686. Total energy = 11356.5071 kcal/mol (11352.1271 without restraints) Performing minimization step: 1687. Total energy = 11351.9188 kcal/mol (11347.5399 without restraints) Performing minimization step: 1688. Total energy = 11347.3352 kcal/mol (11342.9572 without restraints) Performing minimization step: 1689. Total energy = 11342.7555 kcal/mol (11338.3785 without restraints) Performing minimization step: 1690. Total energy = 11338.1798 kcal/mol (11333.8037 without restraints) Performing minimization step: 1691. Total energy = 11333.6081 kcal/mol (11329.2329 without restraints) Performing minimization step: 1692. Total energy = 11329.0404 kcal/mol (11324.6661 without restraints) Performing minimization step: 1693. Total energy = 11324.4774 kcal/mol (11320.1042 without restraints) Performing minimization step: 1694. Total energy = 11319.9185 kcal/mol (11315.5462 without restraints) Performing minimization step: 1695. Total energy = 11315.3642 kcal/mol (11310.9928 without restraints) Performing minimization step: 1696. Total energy = 11310.8134 kcal/mol (11306.4430 without restraints) Performing minimization step: 1697. Total energy = 11306.2670 kcal/mol (11301.8976 without restraints) Performing minimization step: 1698. Total energy = 11301.7245 kcal/mol (11297.3560 without restraints) Performing minimization step: 1699. Total energy = 11297.1863 kcal/mol (11292.8187 without restraints) Performing minimization step: 1700. Total energy = 11292.6520 kcal/mol (11288.2854 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 11288.1221 kcal/mol (11283.7564 without restraints) Performing minimization step: 1702. Total energy = 11283.5962 kcal/mol (11279.2315 without restraints) Performing minimization step: 1703. Total energy = 11279.0744 kcal/mol (11274.7105 without restraints) Performing minimization step: 1704. Total energy = 11274.5558 kcal/mol (11270.1928 without restraints) Performing minimization step: 1705. Total energy = 11270.0424 kcal/mol (11265.6805 without restraints) Performing minimization step: 1706. Total energy = 11265.5326 kcal/mol (11261.1716 without restraints) Performing minimization step: 1707. Total energy = 11261.0274 kcal/mol (11256.6672 without restraints) Performing minimization step: 1708. Total energy = 11256.5261 kcal/mol (11252.1669 without restraints) Performing minimization step: 1709. Total energy = 11252.0284 kcal/mol (11247.6701 without restraints) Performing minimization step: 1710. Total energy = 11247.5352 kcal/mol (11243.1779 without restraints) Performing minimization step: 1711. Total energy = 11243.0467 kcal/mol (11238.6902 without restraints) Performing minimization step: 1712. Total energy = 11238.5619 kcal/mol (11234.2064 without restraints) Performing minimization step: 1713. Total energy = 11234.0807 kcal/mol (11229.7261 without restraints) Performing minimization step: 1714. Total energy = 11229.6032 kcal/mol (11225.2496 without restraints) Performing minimization step: 1715. Total energy = 11225.1303 kcal/mol (11220.7777 without restraints) Performing minimization step: 1716. Total energy = 11220.6614 kcal/mol (11216.3096 without restraints) Performing minimization step: 1717. Total energy = 11216.1965 kcal/mol (11211.8456 without restraints) Performing minimization step: 1718. Total energy = 11211.7352 kcal/mol (11207.3852 without restraints) Performing minimization step: 1719. Total energy = 11207.2781 kcal/mol (11202.9291 without restraints) Performing minimization step: 1720. Total energy = 11202.8254 kcal/mol (11198.4774 without restraints) Performing minimization step: 1721. Total energy = 11198.3769 kcal/mol (11194.0297 without restraints) Performing minimization step: 1722. Total energy = 11193.9320 kcal/mol (11189.5857 without restraints) Performing minimization step: 1723. Total energy = 11189.4909 kcal/mol (11185.1455 without restraints) Performing minimization step: 1724. Total energy = 11185.0535 kcal/mol (11180.7088 without restraints) Performing minimization step: 1725. Total energy = 11180.6196 kcal/mol (11176.2761 without restraints) Performing minimization step: 1726. Total energy = 11176.1905 kcal/mol (11171.8476 without restraints) Performing minimization step: 1727. Total energy = 11171.7650 kcal/mol (11167.4232 without restraints) Performing minimization step: 1728. Total energy = 11167.3439 kcal/mol (11163.0030 without restraints) Performing minimization step: 1729. Total energy = 11162.9265 kcal/mol (11158.5866 without restraints) Performing minimization step: 1730. Total energy = 11158.5130 kcal/mol (11154.1740 without restraints) Performing minimization step: 1731. Total energy = 11154.1036 kcal/mol (11149.7655 without restraints) Performing minimization step: 1732. Total energy = 11149.6980 kcal/mol (11145.3608 without restraints) Performing minimization step: 1733. Total energy = 11145.2962 kcal/mol (11140.9599 without restraints) Performing minimization step: 1734. Total energy = 11140.8982 kcal/mol (11136.5628 without restraints) Performing minimization step: 1735. Total energy = 11136.5041 kcal/mol (11132.1696 without restraints) Performing minimization step: 1736. Total energy = 11132.1141 kcal/mol (11127.7804 without restraints) Performing minimization step: 1737. Total energy = 11127.7279 kcal/mol (11123.3952 without restraints) Performing minimization step: 1738. Total energy = 11123.3455 kcal/mol (11119.0138 without restraints) Performing minimization step: 1739. Total energy = 11118.9667 kcal/mol (11114.6357 without restraints) Performing minimization step: 1740. Total energy = 11114.5917 kcal/mol (11110.2616 without restraints) Performing minimization step: 1741. Total energy = 11110.2205 kcal/mol (11105.8914 without restraints) Performing minimization step: 1742. Total energy = 11105.8536 kcal/mol (11101.5253 without restraints) Performing minimization step: 1743. Total energy = 11101.4902 kcal/mol (11097.1627 without restraints) Performing minimization step: 1744. Total energy = 11097.1310 kcal/mol (11092.8045 without restraints) Performing minimization step: 1745. Total energy = 11092.7753 kcal/mol (11088.4497 without restraints) Performing minimization step: 1746. Total energy = 11088.4234 kcal/mol (11084.0986 without restraints) Performing minimization step: 1747. Total energy = 11084.0752 kcal/mol (11079.7514 without restraints) Performing minimization step: 1748. Total energy = 11079.7309 kcal/mol (11075.4080 without restraints) Performing minimization step: 1749. Total energy = 11075.3902 kcal/mol (11071.0680 without restraints) Performing minimization step: 1750. Total energy = 11071.0533 kcal/mol (11066.7321 without restraints) Performing minimization step: 1751. Total energy = 11066.7205 kcal/mol (11062.4002 without restraints) Performing minimization step: 1752. Total energy = 11062.3912 kcal/mol (11058.0718 without restraints) Performing minimization step: 1753. Total energy = 11058.0657 kcal/mol (11053.7471 without restraints) Performing minimization step: 1754. Total energy = 11053.7436 kcal/mol (11049.4258 without restraints) Performing minimization step: 1755. Total energy = 11049.4246 kcal/mol (11045.1079 without restraints) Performing minimization step: 1756. Total energy = 11045.1099 kcal/mol (11040.7940 without restraints) Performing minimization step: 1757. Total energy = 11040.7994 kcal/mol (11036.4845 without restraints) Performing minimization step: 1758. Total energy = 11036.4921 kcal/mol (11032.1779 without restraints) Performing minimization step: 1759. Total energy = 11032.1889 kcal/mol (11027.8758 without restraints) Performing minimization step: 1760. Total energy = 11027.8896 kcal/mol (11023.5772 without restraints) Performing minimization step: 1761. Total energy = 11023.5938 kcal/mol (11019.2823 without restraints) Performing minimization step: 1762. Total energy = 11019.3016 kcal/mol (11014.9910 without restraints) Performing minimization step: 1763. Total energy = 11015.0130 kcal/mol (11010.7033 without restraints) Performing minimization step: 1764. Total energy = 11010.7289 kcal/mol (11006.4200 without restraints) Performing minimization step: 1765. Total energy = 11006.4478 kcal/mol (11002.1398 without restraints) Performing minimization step: 1766. Total energy = 11002.1703 kcal/mol (10997.8632 without restraints) Performing minimization step: 1767. Total energy = 10997.8964 kcal/mol (10993.5900 without restraints) Performing minimization step: 1768. Total energy = 10993.6259 kcal/mol (10989.3205 without restraints) Performing minimization step: 1769. Total energy = 10989.3597 kcal/mol (10985.0552 without restraints) Performing minimization step: 1770. Total energy = 10985.0972 kcal/mol (10980.7935 without restraints) Performing minimization step: 1771. Total energy = 10980.8381 kcal/mol (10976.5353 without restraints) Performing minimization step: 1772. Total energy = 10976.5824 kcal/mol (10972.2805 without restraints) Performing minimization step: 1773. Total energy = 10972.3304 kcal/mol (10968.0293 without restraints) Performing minimization step: 1774. Total energy = 10968.0821 kcal/mol (10963.7818 without restraints) Performing minimization step: 1775. Total energy = 10963.8374 kcal/mol (10959.5381 without restraints) Performing minimization step: 1776. Total energy = 10959.5964 kcal/mol (10955.2980 without restraints) Performing minimization step: 1777. Total energy = 10955.3586 kcal/mol (10951.0609 without restraints) Performing minimization step: 1778. Total energy = 10951.1243 kcal/mol (10946.8275 without restraints) Performing minimization step: 1779. Total energy = 10946.8937 kcal/mol (10942.5978 without restraints) Performing minimization step: 1780. Total energy = 10942.6666 kcal/mol (10938.3716 without restraints) Performing minimization step: 1781. Total energy = 10938.4433 kcal/mol (10934.1490 without restraints) Performing minimization step: 1782. Total energy = 10934.2232 kcal/mol (10929.9298 without restraints) Performing minimization step: 1783. Total energy = 10930.0067 kcal/mol (10925.7143 without restraints) Performing minimization step: 1784. Total energy = 10925.7942 kcal/mol (10921.5026 without restraints) Performing minimization step: 1785. Total energy = 10921.5848 kcal/mol (10917.2940 without restraints) Performing minimization step: 1786. Total energy = 10917.3792 kcal/mol (10913.0892 without restraints) Performing minimization step: 1787. Total energy = 10913.1768 kcal/mol (10908.8876 without restraints) Performing minimization step: 1788. Total energy = 10908.9779 kcal/mol (10904.6896 without restraints) Performing minimization step: 1789. Total energy = 10904.7828 kcal/mol (10900.4953 without restraints) Performing minimization step: 1790. Total energy = 10900.5912 kcal/mol (10896.3046 without restraints) Performing minimization step: 1791. Total energy = 10896.4028 kcal/mol (10892.1171 without restraints) Performing minimization step: 1792. Total energy = 10892.2181 kcal/mol (10887.9332 without restraints) Performing minimization step: 1793. Total energy = 10888.0367 kcal/mol (10883.7527 without restraints) Performing minimization step: 1794. Total energy = 10883.8586 kcal/mol (10879.5754 without restraints) Performing minimization step: 1795. Total energy = 10879.6837 kcal/mol (10875.4014 without restraints) Performing minimization step: 1796. Total energy = 10875.5125 kcal/mol (10871.2311 without restraints) Performing minimization step: 1797. Total energy = 10871.3451 kcal/mol (10867.0644 without restraints) Performing minimization step: 1798. Total energy = 10867.1812 kcal/mol (10862.9014 without restraints) Performing minimization step: 1799. Total energy = 10863.0204 kcal/mol (10858.7412 without restraints) Performing minimization step: 1800. Total energy = 10858.8634 kcal/mol (10854.5852 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 10854.7100 kcal/mol (10850.4326 without restraints) Performing minimization step: 1802. Total energy = 10850.5598 kcal/mol (10846.2833 without restraints) Performing minimization step: 1803. Total energy = 10846.4125 kcal/mol (10842.1367 without restraints) Performing minimization step: 1804. Total energy = 10842.2689 kcal/mol (10837.9940 without restraints) Performing minimization step: 1805. Total energy = 10838.1287 kcal/mol (10833.8548 without restraints) Performing minimization step: 1806. Total energy = 10833.9922 kcal/mol (10829.7190 without restraints) Performing minimization step: 1807. Total energy = 10829.8583 kcal/mol (10825.5859 without restraints) Performing minimization step: 1808. Total energy = 10825.7282 kcal/mol (10821.4567 without restraints) Performing minimization step: 1809. Total energy = 10821.6017 kcal/mol (10817.3310 without restraints) Performing minimization step: 1810. Total energy = 10817.4785 kcal/mol (10813.2086 without restraints) Performing minimization step: 1811. Total energy = 10813.3589 kcal/mol (10809.0898 without restraints) Performing minimization step: 1812. Total energy = 10809.2419 kcal/mol (10804.9737 without restraints) Performing minimization step: 1813. Total energy = 10805.1284 kcal/mol (10800.8609 without restraints) Performing minimization step: 1814. Total energy = 10801.0181 kcal/mol (10796.7515 without restraints) Performing minimization step: 1815. Total energy = 10796.9115 kcal/mol (10792.6457 without restraints) Performing minimization step: 1816. Total energy = 10792.8079 kcal/mol (10788.5428 without restraints) Performing minimization step: 1817. Total energy = 10788.7079 kcal/mol (10784.4438 without restraints) Performing minimization step: 1818. Total energy = 10784.6114 kcal/mol (10780.3481 without restraints) Performing minimization step: 1819. Total energy = 10780.5182 kcal/mol (10776.2557 without restraints) Performing minimization step: 1820. Total energy = 10776.4281 kcal/mol (10772.1664 without restraints) Performing minimization step: 1821. Total energy = 10772.3412 kcal/mol (10768.0803 without restraints) Performing minimization step: 1822. Total energy = 10768.2579 kcal/mol (10763.9979 without restraints) Performing minimization step: 1823. Total energy = 10764.1780 kcal/mol (10759.9189 without restraints) Performing minimization step: 1824. Total energy = 10760.1013 kcal/mol (10755.8429 without restraints) Performing minimization step: 1825. Total energy = 10756.0278 kcal/mol (10751.7701 without restraints) Performing minimization step: 1826. Total energy = 10751.9574 kcal/mol (10747.7005 without restraints) Performing minimization step: 1827. Total energy = 10747.8901 kcal/mol (10743.6341 without restraints) Performing minimization step: 1828. Total energy = 10743.8264 kcal/mol (10739.5713 without restraints) Performing minimization step: 1829. Total energy = 10739.7660 kcal/mol (10735.5116 without restraints) Performing minimization step: 1830. Total energy = 10735.7084 kcal/mol (10731.4548 without restraints) Performing minimization step: 1831. Total energy = 10731.6537 kcal/mol (10727.4008 without restraints) Performing minimization step: 1832. Total energy = 10727.6025 kcal/mol (10723.3505 without restraints) Performing minimization step: 1833. Total energy = 10723.5549 kcal/mol (10719.3036 without restraints) Performing minimization step: 1834. Total energy = 10719.5100 kcal/mol (10715.2594 without restraints) Performing minimization step: 1835. Total energy = 10715.4683 kcal/mol (10711.2186 without restraints) Performing minimization step: 1836. Total energy = 10711.4299 kcal/mol (10707.1811 without restraints) Performing minimization step: 1837. Total energy = 10707.3942 kcal/mol (10703.1461 without restraints) Performing minimization step: 1838. Total energy = 10703.3629 kcal/mol (10699.1157 without restraints) Performing minimization step: 1839. Total energy = 10699.3340 kcal/mol (10695.0877 without restraints) Performing minimization step: 1840. Total energy = 10695.3086 kcal/mol (10691.0630 without restraints) Performing minimization step: 1841. Total energy = 10691.2860 kcal/mol (10687.0412 without restraints) Performing minimization step: 1842. Total energy = 10687.2665 kcal/mol (10683.0224 without restraints) Performing minimization step: 1843. Total energy = 10683.2503 kcal/mol (10679.0070 without restraints) Performing minimization step: 1844. Total energy = 10679.2376 kcal/mol (10674.9951 without restraints) Performing minimization step: 1845. Total energy = 10675.2277 kcal/mol (10670.9860 without restraints) Performing minimization step: 1846. Total energy = 10671.2209 kcal/mol (10666.9801 without restraints) Performing minimization step: 1847. Total energy = 10667.2176 kcal/mol (10662.9776 without restraints) Performing minimization step: 1848. Total energy = 10663.2175 kcal/mol (10658.9781 without restraints) Performing minimization step: 1849. Total energy = 10659.2202 kcal/mol (10654.9817 without restraints) Performing minimization step: 1850. Total energy = 10655.2257 kcal/mol (10650.9879 without restraints) Performing minimization step: 1851. Total energy = 10651.2343 kcal/mol (10646.9973 without restraints) Performing minimization step: 1852. Total energy = 10647.2464 kcal/mol (10643.0103 without restraints) Performing minimization step: 1853. Total energy = 10643.2614 kcal/mol (10639.0260 without restraints) Performing minimization step: 1854. Total energy = 10639.2797 kcal/mol (10635.0451 without restraints) Performing minimization step: 1855. Total energy = 10635.3011 kcal/mol (10631.0673 without restraints) Performing minimization step: 1856. Total energy = 10631.3253 kcal/mol (10627.0923 without restraints) Performing minimization step: 1857. Total energy = 10627.3526 kcal/mol (10623.1204 without restraints) Performing minimization step: 1858. Total energy = 10623.3829 kcal/mol (10619.1515 without restraints) Performing minimization step: 1859. Total energy = 10619.4163 kcal/mol (10615.1856 without restraints) Performing minimization step: 1860. Total energy = 10615.4527 kcal/mol (10611.2228 without restraints) Performing minimization step: 1861. Total energy = 10611.4926 kcal/mol (10607.2635 without restraints) Performing minimization step: 1862. Total energy = 10607.5354 kcal/mol (10603.3072 without restraints) Performing minimization step: 1863. Total energy = 10603.5811 kcal/mol (10599.3536 without restraints) Performing minimization step: 1864. Total energy = 10599.6296 kcal/mol (10595.4028 without restraints) Performing minimization step: 1865. Total energy = 10595.6808 kcal/mol (10591.4549 without restraints) Performing minimization step: 1866. Total energy = 10591.7356 kcal/mol (10587.5104 without restraints) Performing minimization step: 1867. Total energy = 10587.7937 kcal/mol (10583.5692 without restraints) Performing minimization step: 1868. Total energy = 10583.8543 kcal/mol (10579.6306 without restraints) Performing minimization step: 1869. Total energy = 10579.9178 kcal/mol (10575.6950 without restraints) Performing minimization step: 1870. Total energy = 10575.9843 kcal/mol (10571.7623 without restraints) Performing minimization step: 1871. Total energy = 10572.0541 kcal/mol (10567.8327 without restraints) Performing minimization step: 1872. Total energy = 10568.1265 kcal/mol (10563.9059 without restraints) Performing minimization step: 1873. Total energy = 10564.2021 kcal/mol (10559.9822 without restraints) Performing minimization step: 1874. Total energy = 10560.2809 kcal/mol (10556.0618 without restraints) Performing minimization step: 1875. Total energy = 10556.3628 kcal/mol (10552.1444 without restraints) Performing minimization step: 1876. Total energy = 10552.4476 kcal/mol (10548.2300 without restraints) Performing minimization step: 1877. Total energy = 10548.5351 kcal/mol (10544.3183 without restraints) Performing minimization step: 1878. Total energy = 10544.6254 kcal/mol (10540.4094 without restraints) Performing minimization step: 1879. Total energy = 10540.7190 kcal/mol (10536.5037 without restraints) Performing minimization step: 1880. Total energy = 10536.8154 kcal/mol (10532.6008 without restraints) Performing minimization step: 1881. Total energy = 10532.9145 kcal/mol (10528.7007 without restraints) Performing minimization step: 1882. Total energy = 10529.0166 kcal/mol (10524.8036 without restraints) Performing minimization step: 1883. Total energy = 10525.1215 kcal/mol (10520.9093 without restraints) Performing minimization step: 1884. Total energy = 10521.2294 kcal/mol (10517.0179 without restraints) Performing minimization step: 1885. Total energy = 10517.3406 kcal/mol (10513.1297 without restraints) Performing minimization step: 1886. Total energy = 10513.4545 kcal/mol (10509.2445 without restraints) Performing minimization step: 1887. Total energy = 10509.5713 kcal/mol (10505.3619 without restraints) Performing minimization step: 1888. Total energy = 10505.6907 kcal/mol (10501.4822 without restraints) Performing minimization step: 1889. Total energy = 10501.8135 kcal/mol (10497.6060 without restraints) Performing minimization step: 1890. Total energy = 10497.9391 kcal/mol (10493.7321 without restraints) Performing minimization step: 1891. Total energy = 10494.0673 kcal/mol (10489.8610 without restraints) Performing minimization step: 1892. Total energy = 10490.1984 kcal/mol (10485.9929 without restraints) Performing minimization step: 1893. Total energy = 10486.3323 kcal/mol (10482.1275 without restraints) Performing minimization step: 1894. Total energy = 10482.4695 kcal/mol (10478.2656 without restraints) Performing minimization step: 1895. Total energy = 10478.6093 kcal/mol (10474.4061 without restraints) Performing minimization step: 1896. Total energy = 10474.7516 kcal/mol (10470.5490 without restraints) Performing minimization step: 1897. Total energy = 10470.8968 kcal/mol (10466.6950 without restraints) Performing minimization step: 1898. Total energy = 10467.0451 kcal/mol (10462.8440 without restraints) Performing minimization step: 1899. Total energy = 10463.1963 kcal/mol (10458.9960 without restraints) Performing minimization step: 1900. Total energy = 10459.3503 kcal/mol (10455.1507 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 10455.5071 kcal/mol (10451.3083 without restraints) Performing minimization step: 1902. Total energy = 10451.6666 kcal/mol (10447.4685 without restraints) Performing minimization step: 1903. Total energy = 10447.8286 kcal/mol (10443.6312 without restraints) Performing minimization step: 1904. Total energy = 10443.9940 kcal/mol (10439.7974 without restraints) Performing minimization step: 1905. Total energy = 10440.1620 kcal/mol (10435.9662 without restraints) Performing minimization step: 1906. Total energy = 10436.3330 kcal/mol (10432.1379 without restraints) Performing minimization step: 1907. Total energy = 10432.5068 kcal/mol (10428.3124 without restraints) Performing minimization step: 1908. Total energy = 10428.6832 kcal/mol (10424.4896 without restraints) Performing minimization step: 1909. Total energy = 10424.8626 kcal/mol (10420.6697 without restraints) Performing minimization step: 1910. Total energy = 10421.0446 kcal/mol (10416.8524 without restraints) Performing minimization step: 1911. Total energy = 10417.2296 kcal/mol (10413.0382 without restraints) Performing minimization step: 1912. Total energy = 10413.4171 kcal/mol (10409.2264 without restraints) Performing minimization step: 1913. Total energy = 10409.6076 kcal/mol (10405.4176 without restraints) Performing minimization step: 1914. Total energy = 10405.8007 kcal/mol (10401.6114 without restraints) Performing minimization step: 1915. Total energy = 10401.9966 kcal/mol (10397.8081 without restraints) Performing minimization step: 1916. Total energy = 10398.1954 kcal/mol (10394.0076 without restraints) Performing minimization step: 1917. Total energy = 10394.3967 kcal/mol (10390.2097 without restraints) Performing minimization step: 1918. Total energy = 10390.6012 kcal/mol (10386.4149 without restraints) Performing minimization step: 1919. Total energy = 10386.8081 kcal/mol (10382.6225 without restraints) Performing minimization step: 1920. Total energy = 10383.0180 kcal/mol (10378.8332 without restraints) Performing minimization step: 1921. Total energy = 10379.2307 kcal/mol (10375.0465 without restraints) Performing minimization step: 1922. Total energy = 10375.4457 kcal/mol (10371.2623 without restraints) Performing minimization step: 1923. Total energy = 10371.6635 kcal/mol (10367.4808 without restraints) Performing minimization step: 1924. Total energy = 10367.8838 kcal/mol (10363.7018 without restraints) Performing minimization step: 1925. Total energy = 10364.1069 kcal/mol (10359.9257 without restraints) Performing minimization step: 1926. Total energy = 10360.3329 kcal/mol (10356.1524 without restraints) Performing minimization step: 1927. Total energy = 10356.5615 kcal/mol (10352.3817 without restraints) Performing minimization step: 1928. Total energy = 10352.7929 kcal/mol (10348.6138 without restraints) Performing minimization step: 1929. Total energy = 10349.0269 kcal/mol (10344.8485 without restraints) Performing minimization step: 1930. Total energy = 10345.2636 kcal/mol (10341.0860 without restraints) Performing minimization step: 1931. Total energy = 10341.5034 kcal/mol (10337.3265 without restraints) Performing minimization step: 1932. Total energy = 10337.7453 kcal/mol (10333.5691 without restraints) Performing minimization step: 1933. Total energy = 10333.9901 kcal/mol (10329.8146 without restraints) Performing minimization step: 1934. Total energy = 10330.2379 kcal/mol (10326.0631 without restraints) Performing minimization step: 1935. Total energy = 10326.4878 kcal/mol (10322.3137 without restraints) Performing minimization step: 1936. Total energy = 10322.7405 kcal/mol (10318.5672 without restraints) Performing minimization step: 1937. Total energy = 10318.9958 kcal/mol (10314.8231 without restraints) Performing minimization step: 1938. Total energy = 10315.2540 kcal/mol (10311.0820 without restraints) Performing minimization step: 1939. Total energy = 10311.5150 kcal/mol (10307.3437 without restraints) Performing minimization step: 1940. Total energy = 10307.7781 kcal/mol (10303.6076 without restraints) Performing minimization step: 1941. Total energy = 10304.0441 kcal/mol (10299.8744 without restraints) Performing minimization step: 1942. Total energy = 10300.3128 kcal/mol (10296.1437 without restraints) Performing minimization step: 1943. Total energy = 10296.5839 kcal/mol (10292.4155 without restraints) Performing minimization step: 1944. Total energy = 10292.8581 kcal/mol (10288.6904 without restraints) Performing minimization step: 1945. Total energy = 10289.1344 kcal/mol (10284.9674 without restraints) Performing minimization step: 1946. Total energy = 10285.4133 kcal/mol (10281.2471 without restraints) Performing minimization step: 1947. Total energy = 10281.6955 kcal/mol (10277.5300 without restraints) Performing minimization step: 1948. Total energy = 10277.9804 kcal/mol (10273.8155 without restraints) Performing minimization step: 1949. Total energy = 10274.2674 kcal/mol (10270.1032 without restraints) Performing minimization step: 1950. Total energy = 10270.5565 kcal/mol (10266.3931 without restraints) Performing minimization step: 1951. Total energy = 10266.8487 kcal/mol (10262.6860 without restraints) Performing minimization step: 1952. Total energy = 10263.1431 kcal/mol (10258.9811 without restraints) Performing minimization step: 1953. Total energy = 10259.4409 kcal/mol (10255.2795 without restraints) Performing minimization step: 1954. Total energy = 10255.7408 kcal/mol (10251.5801 without restraints) Performing minimization step: 1955. Total energy = 10252.0433 kcal/mol (10247.8834 without restraints) Performing minimization step: 1956. Total energy = 10248.3488 kcal/mol (10244.1895 without restraints) Performing minimization step: 1957. Total energy = 10244.6566 kcal/mol (10240.4980 without restraints) Performing minimization step: 1958. Total energy = 10240.9672 kcal/mol (10236.8094 without restraints) Performing minimization step: 1959. Total energy = 10237.2801 kcal/mol (10233.1230 without restraints) Performing minimization step: 1960. Total energy = 10233.5952 kcal/mol (10229.4386 without restraints) Performing minimization step: 1961. Total energy = 10229.9131 kcal/mol (10225.7574 without restraints) Performing minimization step: 1962. Total energy = 10226.2339 kcal/mol (10222.0788 without restraints) Performing minimization step: 1963. Total energy = 10222.5570 kcal/mol (10218.4027 without restraints) Performing minimization step: 1964. Total energy = 10218.8828 kcal/mol (10214.7290 without restraints) Performing minimization step: 1965. Total energy = 10215.2105 kcal/mol (10211.0575 without restraints) Performing minimization step: 1966. Total energy = 10211.5412 kcal/mol (10207.3889 without restraints) Performing minimization step: 1967. Total energy = 10207.8737 kcal/mol (10203.7220 without restraints) Performing minimization step: 1968. Total energy = 10204.2096 kcal/mol (10200.0586 without restraints) Performing minimization step: 1969. Total energy = 10200.5479 kcal/mol (10196.3977 without restraints) Performing minimization step: 1970. Total energy = 10196.8883 kcal/mol (10192.7387 without restraints) Performing minimization step: 1971. Total energy = 10193.2317 kcal/mol (10189.0828 without restraints) Performing minimization step: 1972. Total energy = 10189.5777 kcal/mol (10185.4296 without restraints) Performing minimization step: 1973. Total energy = 10185.9262 kcal/mol (10181.7786 without restraints) Performing minimization step: 1974. Total energy = 10182.2771 kcal/mol (10178.1302 without restraints) Performing minimization step: 1975. Total energy = 10178.6307 kcal/mol (10174.4846 without restraints) Performing minimization step: 1976. Total energy = 10174.9870 kcal/mol (10170.8416 without restraints) Performing minimization step: 1977. Total energy = 10171.3456 kcal/mol (10167.2008 without restraints) Performing minimization step: 1978. Total energy = 10167.7067 kcal/mol (10163.5628 without restraints) Performing minimization step: 1979. Total energy = 10164.0703 kcal/mol (10159.9268 without restraints) Performing minimization step: 1980. Total energy = 10160.4362 kcal/mol (10156.2935 without restraints) Performing minimization step: 1981. Total energy = 10156.8046 kcal/mol (10152.6625 without restraints) Performing minimization step: 1982. Total energy = 10153.1754 kcal/mol (10149.0340 without restraints) Performing minimization step: 1983. Total energy = 10149.5493 kcal/mol (10145.4089 without restraints) Performing minimization step: 1984. Total energy = 10145.9258 kcal/mol (10141.7858 without restraints) Performing minimization step: 1985. Total energy = 10142.3039 kcal/mol (10138.1645 without restraints) Performing minimization step: 1986. Total energy = 10138.6847 kcal/mol (10134.5461 without restraints) Performing minimization step: 1987. Total energy = 10135.0681 kcal/mol (10130.9301 without restraints) Performing minimization step: 1988. Total energy = 10131.4536 kcal/mol (10127.3163 without restraints) Performing minimization step: 1989. Total energy = 10127.8419 kcal/mol (10123.7052 without restraints) Performing minimization step: 1990. Total energy = 10124.2324 kcal/mol (10120.0964 without restraints) Performing minimization step: 1991. Total energy = 10120.6260 kcal/mol (10116.4906 without restraints) Performing minimization step: 1992. Total energy = 10117.0213 kcal/mol (10112.8866 without restraints) Performing minimization step: 1993. Total energy = 10113.4196 kcal/mol (10109.2856 without restraints) Performing minimization step: 1994. Total energy = 10109.8200 kcal/mol (10105.6866 without restraints) Performing minimization step: 1995. Total energy = 10106.2230 kcal/mol (10102.0904 without restraints) Performing minimization step: 1996. Total energy = 10102.6280 kcal/mol (10098.4961 without restraints) Performing minimization step: 1997. Total energy = 10099.0357 kcal/mol (10094.9044 without restraints) Performing minimization step: 1998. Total energy = 10095.4454 kcal/mol (10091.3148 without restraints) Performing minimization step: 1999. Total energy = 10091.8582 kcal/mol (10087.7283 without restraints) Performing minimization step: 2000. Total energy = 10088.2732 kcal/mol (10084.1439 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 10084.6903 kcal/mol (10080.5618 without restraints) Performing minimization step: 2002. Total energy = 10081.1099 kcal/mol (10076.9820 without restraints) Performing minimization step: 2003. Total energy = 10077.5321 kcal/mol (10073.4048 without restraints) Performing minimization step: 2004. Total energy = 10073.9564 kcal/mol (10069.8298 without restraints) Performing minimization step: 2005. Total energy = 10070.3828 kcal/mol (10066.2569 without restraints) Performing minimization step: 2006. Total energy = 10066.8119 kcal/mol (10062.6866 without restraints) Performing minimization step: 2007. Total energy = 10063.2432 kcal/mol (10059.1184 without restraints) Performing minimization step: 2008. Total energy = 10059.6771 kcal/mol (10055.5530 without restraints) Performing minimization step: 2009. Total energy = 10056.1134 kcal/mol (10051.9901 without restraints) Performing minimization step: 2010. Total energy = 10052.5522 kcal/mol (10048.4296 without restraints) Performing minimization step: 2011. Total energy = 10048.9932 kcal/mol (10044.8712 without restraints) Performing minimization step: 2012. Total energy = 10045.4366 kcal/mol (10041.3152 without restraints) Performing minimization step: 2013. Total energy = 10041.8823 kcal/mol (10037.7616 without restraints) Performing minimization step: 2014. Total energy = 10038.3308 kcal/mol (10034.2108 without restraints) Performing minimization step: 2015. Total energy = 10034.7815 kcal/mol (10030.6622 without restraints) Performing minimization step: 2016. Total energy = 10031.2340 kcal/mol (10027.1153 without restraints) Performing minimization step: 2017. Total energy = 10027.6891 kcal/mol (10023.5710 without restraints) Performing minimization step: 2018. Total energy = 10024.1471 kcal/mol (10020.0299 without restraints) Performing minimization step: 2019. Total energy = 10020.6070 kcal/mol (10016.4903 without restraints) Performing minimization step: 2020. Total energy = 10017.0693 kcal/mol (10012.9530 without restraints) Performing minimization step: 2021. Total energy = 10013.5341 kcal/mol (10009.4186 without restraints) Performing minimization step: 2022. Total energy = 10010.0007 kcal/mol (10005.8858 without restraints) Performing minimization step: 2023. Total energy = 10006.4700 kcal/mol (10002.3560 without restraints) Performing minimization step: 2024. Total energy = 10002.9415 kcal/mol (9998.8280 without restraints) Performing minimization step: 2025. Total energy = 9999.4155 kcal/mol (9995.3026 without restraints) Performing minimization step: 2026. Total energy = 9995.8916 kcal/mol (9991.7794 without restraints) Performing minimization step: 2027. Total energy = 9992.3706 kcal/mol (9988.2591 without restraints) Performing minimization step: 2028. Total energy = 9988.8514 kcal/mol (9984.7404 without restraints) Performing minimization step: 2029. Total energy = 9985.3344 kcal/mol (9981.2241 without restraints) Performing minimization step: 2030. Total energy = 9981.8197 kcal/mol (9977.7101 without restraints) Performing minimization step: 2031. Total energy = 9978.3075 kcal/mol (9974.1985 without restraints) Performing minimization step: 2032. Total energy = 9974.7973 kcal/mol (9970.6889 without restraints) Performing minimization step: 2033. Total energy = 9971.2896 kcal/mol (9967.1819 without restraints) Performing minimization step: 2034. Total energy = 9967.7839 kcal/mol (9963.6768 without restraints) Performing minimization step: 2035. Total energy = 9964.2804 kcal/mol (9960.1740 without restraints) Performing minimization step: 2036. Total energy = 9960.7791 kcal/mol (9956.6732 without restraints) Performing minimization step: 2037. Total energy = 9957.2803 kcal/mol (9953.1751 without restraints) Performing minimization step: 2038. Total energy = 9953.7841 kcal/mol (9949.6796 without restraints) Performing minimization step: 2039. Total energy = 9950.2899 kcal/mol (9946.1861 without restraints) Performing minimization step: 2040. Total energy = 9946.7983 kcal/mol (9942.6951 without restraints) Performing minimization step: 2041. Total energy = 9943.3088 kcal/mol (9939.2062 without restraints) Performing minimization step: 2042. Total energy = 9939.8216 kcal/mol (9935.7196 without restraints) Performing minimization step: 2043. Total energy = 9936.3364 kcal/mol (9932.2350 without restraints) Performing minimization step: 2044. Total energy = 9932.8537 kcal/mol (9928.7530 without restraints) Performing minimization step: 2045. Total energy = 9929.3730 kcal/mol (9925.2730 without restraints) Performing minimization step: 2046. Total energy = 9925.8944 kcal/mol (9921.7949 without restraints) Performing minimization step: 2047. Total energy = 9922.4181 kcal/mol (9918.3192 without restraints) Performing minimization step: 2048. Total energy = 9918.9438 kcal/mol (9914.8456 without restraints) Performing minimization step: 2049. Total energy = 9915.4721 kcal/mol (9911.3746 without restraints) Performing minimization step: 2050. Total energy = 9912.0027 kcal/mol (9907.9058 without restraints) Performing minimization step: 2051. Total energy = 9908.5355 kcal/mol (9904.4392 without restraints) Performing minimization step: 2052. Total energy = 9905.0703 kcal/mol (9900.9742 without restraints) Performing minimization step: 2053. Total energy = 9901.6072 kcal/mol (9897.5122 without restraints) Performing minimization step: 2054. Total energy = 9898.1468 kcal/mol (9894.0525 without restraints) Performing minimization step: 2055. Total energy = 9894.6885 kcal/mol (9890.5946 without restraints) Performing minimization step: 2056. Total energy = 9891.2322 kcal/mol (9887.1391 without restraints) Performing minimization step: 2057. Total energy = 9887.7782 kcal/mol (9883.6856 without restraints) Performing minimization step: 2058. Total energy = 9884.3265 kcal/mol (9880.2347 without restraints) Performing minimization step: 2059. Total energy = 9880.8773 kcal/mol (9876.7861 without restraints) Performing minimization step: 2060. Total energy = 9877.4303 kcal/mol (9873.3396 without restraints) Performing minimization step: 2061. Total energy = 9873.9849 kcal/mol (9869.8948 without restraints) Performing minimization step: 2062. Total energy = 9870.5419 kcal/mol (9866.4525 without restraints) Performing minimization step: 2063. Total energy = 9867.1017 kcal/mol (9863.0130 without restraints) Performing minimization step: 2064. Total energy = 9863.6632 kcal/mol (9859.5751 without restraints) Performing minimization step: 2065. Total energy = 9860.2270 kcal/mol (9856.1394 without restraints) Performing minimization step: 2066. Total energy = 9856.7926 kcal/mol (9852.7057 without restraints) Performing minimization step: 2067. Total energy = 9853.3608 kcal/mol (9849.2746 without restraints) Performing minimization step: 2068. Total energy = 9849.9311 kcal/mol (9845.8453 without restraints) Performing minimization step: 2069. Total energy = 9846.5038 kcal/mol (9842.4187 without restraints) Performing minimization step: 2070. Total energy = 9843.0782 kcal/mol (9838.9938 without restraints) Performing minimization step: 2071. Total energy = 9839.6551 kcal/mol (9835.5713 without restraints) Performing minimization step: 2072. Total energy = 9836.2337 kcal/mol (9832.1506 without restraints) Performing minimization step: 2073. Total energy = 9832.8148 kcal/mol (9828.7322 without restraints) Performing minimization step: 2074. Total energy = 9829.3982 kcal/mol (9825.3162 without restraints) Performing minimization step: 2075. Total energy = 9825.9834 kcal/mol (9821.9020 without restraints) Performing minimization step: 2076. Total energy = 9822.5710 kcal/mol (9818.4902 without restraints) Performing minimization step: 2077. Total energy = 9819.1607 kcal/mol (9815.0807 without restraints) Performing minimization step: 2078. Total energy = 9815.7525 kcal/mol (9811.6730 without restraints) Performing minimization step: 2079. Total energy = 9812.3469 kcal/mol (9808.2680 without restraints) Performing minimization step: 2080. Total energy = 9808.9425 kcal/mol (9804.8642 without restraints) Performing minimization step: 2081. Total energy = 9805.5404 kcal/mol (9801.4626 without restraints) Performing minimization step: 2082. Total energy = 9802.1406 kcal/mol (9798.0634 without restraints) Performing minimization step: 2083. Total energy = 9798.7425 kcal/mol (9794.6660 without restraints) Performing minimization step: 2084. Total energy = 9795.3473 kcal/mol (9791.2714 without restraints) Performing minimization step: 2085. Total energy = 9791.9537 kcal/mol (9787.8783 without restraints) Performing minimization step: 2086. Total energy = 9788.5627 kcal/mol (9784.4882 without restraints) Performing minimization step: 2087. Total energy = 9785.1736 kcal/mol (9781.0995 without restraints) Performing minimization step: 2088. Total energy = 9781.7868 kcal/mol (9777.7133 without restraints) Performing minimization step: 2089. Total energy = 9778.4014 kcal/mol (9774.3286 without restraints) Performing minimization step: 2090. Total energy = 9775.0187 kcal/mol (9770.9466 without restraints) Performing minimization step: 2091. Total energy = 9771.6379 kcal/mol (9767.5662 without restraints) Performing minimization step: 2092. Total energy = 9768.2593 kcal/mol (9764.1883 without restraints) Performing minimization step: 2093. Total energy = 9764.8826 kcal/mol (9760.8122 without restraints) Performing minimization step: 2094. Total energy = 9761.5081 kcal/mol (9757.4383 without restraints) Performing minimization step: 2095. Total energy = 9758.1356 kcal/mol (9754.0664 without restraints) Performing minimization step: 2096. Total energy = 9754.7653 kcal/mol (9750.6966 without restraints) Performing minimization step: 2097. Total energy = 9751.3970 kcal/mol (9747.3290 without restraints) Performing minimization step: 2098. Total energy = 9748.0307 kcal/mol (9743.9632 without restraints) Performing minimization step: 2099. Total energy = 9744.6661 kcal/mol (9740.5993 without restraints) Performing minimization step: 2100. Total energy = 9741.3038 kcal/mol (9737.2375 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 9737.9436 kcal/mol (9733.8779 without restraints) Performing minimization step: 2102. Total energy = 9734.5855 kcal/mol (9730.5204 without restraints) Performing minimization step: 2103. Total energy = 9731.2289 kcal/mol (9727.1644 without restraints) Performing minimization step: 2104. Total energy = 9727.8752 kcal/mol (9723.8113 without restraints) Performing minimization step: 2105. Total energy = 9724.5231 kcal/mol (9720.4598 without restraints) Performing minimization step: 2106. Total energy = 9721.1732 kcal/mol (9717.1105 without restraints) Performing minimization step: 2107. Total energy = 9717.8253 kcal/mol (9713.7632 without restraints) Performing minimization step: 2108. Total energy = 9714.4801 kcal/mol (9710.4186 without restraints) Performing minimization step: 2109. Total energy = 9711.1363 kcal/mol (9707.0754 without restraints) Performing minimization step: 2110. Total energy = 9707.7948 kcal/mol (9703.7347 without restraints) Performing minimization step: 2111. Total energy = 9704.4552 kcal/mol (9700.3954 without restraints) Performing minimization step: 2112. Total energy = 9701.1175 kcal/mol (9697.0584 without restraints) Performing minimization step: 2113. Total energy = 9697.7822 kcal/mol (9693.7236 without restraints) Performing minimization step: 2114. Total energy = 9694.4483 kcal/mol (9690.3903 without restraints) Performing minimization step: 2115. Total energy = 9691.1166 kcal/mol (9687.0592 without restraints) Performing minimization step: 2116. Total energy = 9687.7865 kcal/mol (9683.7297 without restraints) Performing minimization step: 2117. Total energy = 9684.4591 kcal/mol (9680.4030 without restraints) Performing minimization step: 2118. Total energy = 9681.1334 kcal/mol (9677.0778 without restraints) Performing minimization step: 2119. Total energy = 9677.8096 kcal/mol (9673.7545 without restraints) Performing minimization step: 2120. Total energy = 9674.4878 kcal/mol (9670.4333 without restraints) Performing minimization step: 2121. Total energy = 9671.1682 kcal/mol (9667.1144 without restraints) Performing minimization step: 2122. Total energy = 9667.8508 kcal/mol (9663.7975 without restraints) Performing minimization step: 2123. Total energy = 9664.5350 kcal/mol (9660.4822 without restraints) Performing minimization step: 2124. Total energy = 9661.2212 kcal/mol (9657.1692 without restraints) Performing minimization step: 2125. Total energy = 9657.9101 kcal/mol (9653.8585 without restraints) Performing minimization step: 2126. Total energy = 9654.6004 kcal/mol (9650.5495 without restraints) Performing minimization step: 2127. Total energy = 9651.2923 kcal/mol (9647.2419 without restraints) Performing minimization step: 2128. Total energy = 9647.9865 kcal/mol (9643.9366 without restraints) Performing minimization step: 2129. Total energy = 9644.6825 kcal/mol (9640.6332 without restraints) Performing minimization step: 2130. Total energy = 9641.3804 kcal/mol (9637.3317 without restraints) Performing minimization step: 2131. Total energy = 9638.0808 kcal/mol (9634.0326 without restraints) Performing minimization step: 2132. Total energy = 9634.7832 kcal/mol (9630.7357 without restraints) Performing minimization step: 2133. Total energy = 9631.4871 kcal/mol (9627.4401 without restraints) Performing minimization step: 2134. Total energy = 9628.1930 kcal/mol (9624.1466 without restraints) Performing minimization step: 2135. Total energy = 9624.9002 kcal/mol (9620.8543 without restraints) Performing minimization step: 2136. Total energy = 9621.6098 kcal/mol (9617.5647 without restraints) Performing minimization step: 2137. Total energy = 9618.3215 kcal/mol (9614.2768 without restraints) Performing minimization step: 2138. Total energy = 9615.0352 kcal/mol (9610.9911 without restraints) Performing minimization step: 2139. Total energy = 9611.7512 kcal/mol (9607.7076 without restraints) Performing minimization step: 2140. Total energy = 9608.4689 kcal/mol (9604.4260 without restraints) Performing minimization step: 2141. Total energy = 9605.1882 kcal/mol (9601.1458 without restraints) Performing minimization step: 2142. Total energy = 9601.9097 kcal/mol (9597.8679 without restraints) Performing minimization step: 2143. Total energy = 9598.6328 kcal/mol (9594.5915 without restraints) Performing minimization step: 2144. Total energy = 9595.3580 kcal/mol (9591.3173 without restraints) Performing minimization step: 2145. Total energy = 9592.0846 kcal/mol (9588.0445 without restraints) Performing minimization step: 2146. Total energy = 9588.8134 kcal/mol (9584.7738 without restraints) Performing minimization step: 2147. Total energy = 9585.5439 kcal/mol (9581.5048 without restraints) Performing minimization step: 2148. Total energy = 9582.2764 kcal/mol (9578.2379 without restraints) Performing minimization step: 2149. Total energy = 9579.0107 kcal/mol (9574.9727 without restraints) Performing minimization step: 2150. Total energy = 9575.7472 kcal/mol (9571.7098 without restraints) Performing minimization step: 2151. Total energy = 9572.4855 kcal/mol (9568.4487 without restraints) Performing minimization step: 2152. Total energy = 9569.2251 kcal/mol (9565.1889 without restraints) Performing minimization step: 2153. Total energy = 9565.9666 kcal/mol (9561.9309 without restraints) Performing minimization step: 2154. Total energy = 9562.7104 kcal/mol (9558.6753 without restraints) Performing minimization step: 2155. Total energy = 9559.4560 kcal/mol (9555.4214 without restraints) Performing minimization step: 2156. Total energy = 9556.2035 kcal/mol (9552.1695 without restraints) Performing minimization step: 2157. Total energy = 9552.9530 kcal/mol (9548.9196 without restraints) Performing minimization step: 2158. Total energy = 9549.7048 kcal/mol (9545.6719 without restraints) Performing minimization step: 2159. Total energy = 9546.4580 kcal/mol (9542.4256 without restraints) Performing minimization step: 2160. Total energy = 9543.2130 kcal/mol (9539.1812 without restraints) Performing minimization step: 2161. Total energy = 9539.9695 kcal/mol (9535.9383 without restraints) Performing minimization step: 2162. Total energy = 9536.7279 kcal/mol (9532.6973 without restraints) Performing minimization step: 2163. Total energy = 9533.4886 kcal/mol (9529.4585 without restraints) Performing minimization step: 2164. Total energy = 9530.2511 kcal/mol (9526.2215 without restraints) Performing minimization step: 2165. Total energy = 9527.0153 kcal/mol (9522.9862 without restraints) Performing minimization step: 2166. Total energy = 9523.7813 kcal/mol (9519.7528 without restraints) Performing minimization step: 2167. Total energy = 9520.5495 kcal/mol (9516.5216 without restraints) Performing minimization step: 2168. Total energy = 9517.3192 kcal/mol (9513.2917 without restraints) Performing minimization step: 2169. Total energy = 9514.0906 kcal/mol (9510.0638 without restraints) Performing minimization step: 2170. Total energy = 9510.8641 kcal/mol (9506.8378 without restraints) Performing minimization step: 2171. Total energy = 9507.6392 kcal/mol (9503.6134 without restraints) Performing minimization step: 2172. Total energy = 9504.4161 kcal/mol (9500.3908 without restraints) Performing minimization step: 2173. Total energy = 9501.1947 kcal/mol (9497.1700 without restraints) Performing minimization step: 2174. Total energy = 9497.9748 kcal/mol (9493.9506 without restraints) Performing minimization step: 2175. Total energy = 9494.7570 kcal/mol (9490.7334 without restraints) Performing minimization step: 2176. Total energy = 9491.5410 kcal/mol (9487.5180 without restraints) Performing minimization step: 2177. Total energy = 9488.3269 kcal/mol (9484.3044 without restraints) Performing minimization step: 2178. Total energy = 9485.1149 kcal/mol (9481.0931 without restraints) Performing minimization step: 2179. Total energy = 9481.9051 kcal/mol (9477.8836 without restraints) Performing minimization step: 2180. Total energy = 9478.6963 kcal/mol (9474.6754 without restraints) Performing minimization step: 2181. Total energy = 9475.4894 kcal/mol (9471.4691 without restraints) Performing minimization step: 2182. Total energy = 9472.2842 kcal/mol (9468.2644 without restraints) Performing minimization step: 2183. Total energy = 9469.0809 kcal/mol (9465.0617 without restraints) Performing minimization step: 2184. Total energy = 9465.8788 kcal/mol (9461.8600 without restraints) Performing minimization step: 2185. Total energy = 9462.6786 kcal/mol (9458.6604 without restraints) Performing minimization step: 2186. Total energy = 9459.4805 kcal/mol (9455.4629 without restraints) Performing minimization step: 2187. Total energy = 9456.2841 kcal/mol (9452.2669 without restraints) Performing minimization step: 2188. Total energy = 9453.0895 kcal/mol (9449.0730 without restraints) Performing minimization step: 2189. Total energy = 9449.8968 kcal/mol (9445.8808 without restraints) Performing minimization step: 2190. Total energy = 9446.7053 kcal/mol (9442.6897 without restraints) Performing minimization step: 2191. Total energy = 9443.5157 kcal/mol (9439.5007 without restraints) Performing minimization step: 2192. Total energy = 9440.3274 kcal/mol (9436.3129 without restraints) Performing minimization step: 2193. Total energy = 9437.1412 kcal/mol (9433.1273 without restraints) Performing minimization step: 2194. Total energy = 9433.9570 kcal/mol (9429.9436 without restraints) Performing minimization step: 2195. Total energy = 9430.7740 kcal/mol (9426.7611 without restraints) Performing minimization step: 2196. Total energy = 9427.5932 kcal/mol (9423.5808 without restraints) Performing minimization step: 2197. Total energy = 9424.4139 kcal/mol (9420.4020 without restraints) Performing minimization step: 2198. Total energy = 9421.2364 kcal/mol (9417.2251 without restraints) Performing minimization step: 2199. Total energy = 9418.0606 kcal/mol (9414.0499 without restraints) Performing minimization step: 2200. Total energy = 9414.8866 kcal/mol (9410.8763 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 9411.7143 kcal/mol (9407.7045 without restraints) Performing minimization step: 2202. Total energy = 9408.5437 kcal/mol (9404.5344 without restraints) Performing minimization step: 2203. Total energy = 9405.3746 kcal/mol (9401.3659 without restraints) Performing minimization step: 2204. Total energy = 9402.2073 kcal/mol (9398.1994 without restraints) Performing minimization step: 2205. Total energy = 9399.0418 kcal/mol (9395.0341 without restraints) Performing minimization step: 2206. Total energy = 9395.8781 kcal/mol (9391.8712 without restraints) Performing minimization step: 2207. Total energy = 9392.7157 kcal/mol (9388.7092 without restraints) Performing minimization step: 2208. Total energy = 9389.5549 kcal/mol (9385.5487 without restraints) Performing minimization step: 2209. Total energy = 9386.3961 kcal/mol (9382.3906 without restraints) Performing minimization step: 2210. Total energy = 9383.2388 kcal/mol (9379.2337 without restraints) Performing minimization step: 2211. Total energy = 9380.0830 kcal/mol (9376.0784 without restraints) Performing minimization step: 2212. Total energy = 9376.9289 kcal/mol (9372.9248 without restraints) Performing minimization step: 2213. Total energy = 9373.7764 kcal/mol (9369.7729 without restraints) Performing minimization step: 2214. Total energy = 9370.6257 kcal/mol (9366.6224 without restraints) Performing minimization step: 2215. Total energy = 9367.4763 kcal/mol (9363.4738 without restraints) Performing minimization step: 2216. Total energy = 9364.3288 kcal/mol (9360.3266 without restraints) Performing minimization step: 2217. Total energy = 9361.1823 kcal/mol (9357.1808 without restraints) Performing minimization step: 2218. Total energy = 9358.0382 kcal/mol (9354.0372 without restraints) Performing minimization step: 2219. Total energy = 9354.8959 kcal/mol (9350.8955 without restraints) Performing minimization step: 2220. Total energy = 9351.7549 kcal/mol (9347.7549 without restraints) Performing minimization step: 2221. Total energy = 9348.6157 kcal/mol (9344.6165 without restraints) Performing minimization step: 2222. Total energy = 9345.4779 kcal/mol (9341.4789 without restraints) Performing minimization step: 2223. Total energy = 9342.3417 kcal/mol (9338.3432 without restraints) Performing minimization step: 2224. Total energy = 9339.2072 kcal/mol (9335.2093 without restraints) Performing minimization step: 2225. Total energy = 9336.0742 kcal/mol (9332.0767 without restraints) Performing minimization step: 2226. Total energy = 9332.9427 kcal/mol (9328.9457 without restraints) Performing minimization step: 2227. Total energy = 9329.8128 kcal/mol (9325.8164 without restraints) Performing minimization step: 2228. Total energy = 9326.6846 kcal/mol (9322.6886 without restraints) Performing minimization step: 2229. Total energy = 9323.5579 kcal/mol (9319.5625 without restraints) Performing minimization step: 2230. Total energy = 9320.4329 kcal/mol (9316.4379 without restraints) Performing minimization step: 2231. Total energy = 9317.3096 kcal/mol (9313.3152 without restraints) Performing minimization step: 2232. Total energy = 9314.1875 kcal/mol (9310.1936 without restraints) Performing minimization step: 2233. Total energy = 9311.0674 kcal/mol (9307.0739 without restraints) Performing minimization step: 2234. Total energy = 9307.9488 kcal/mol (9303.9560 without restraints) Performing minimization step: 2235. Total energy = 9304.8320 kcal/mol (9300.8396 without restraints) Performing minimization step: 2236. Total energy = 9301.7166 kcal/mol (9297.7246 without restraints) Performing minimization step: 2237. Total energy = 9298.6025 kcal/mol (9294.6109 without restraints) Performing minimization step: 2238. Total energy = 9295.4900 kcal/mol (9291.4991 without restraints) Performing minimization step: 2239. Total energy = 9292.3793 kcal/mol (9288.3889 without restraints) Performing minimization step: 2240. Total energy = 9289.2697 kcal/mol (9285.2797 without restraints) Performing minimization step: 2241. Total energy = 9286.1624 kcal/mol (9282.1732 without restraints) Performing minimization step: 2242. Total energy = 9283.0561 kcal/mol (9279.0671 without restraints) Performing minimization step: 2243. Total energy = 9279.9511 kcal/mol (9275.9626 without restraints) Performing minimization step: 2244. Total energy = 9276.8479 kcal/mol (9272.8599 without restraints) Performing minimization step: 2245. Total energy = 9273.7462 kcal/mol (9269.7588 without restraints) Performing minimization step: 2246. Total energy = 9270.6459 kcal/mol (9266.6588 without restraints) Performing minimization step: 2247. Total energy = 9267.5472 kcal/mol (9263.5607 without restraints) Performing minimization step: 2248. Total energy = 9264.4504 kcal/mol (9260.4644 without restraints) Performing minimization step: 2249. Total energy = 9261.3546 kcal/mol (9257.3690 without restraints) Performing minimization step: 2250. Total energy = 9258.2600 kcal/mol (9254.2748 without restraints) Performing minimization step: 2251. Total energy = 9255.1671 kcal/mol (9251.1824 without restraints) Performing minimization step: 2252. Total energy = 9252.0759 kcal/mol (9248.0918 without restraints) Performing minimization step: 2253. Total energy = 9248.9862 kcal/mol (9245.0026 without restraints) Performing minimization step: 2254. Total energy = 9245.8984 kcal/mol (9241.9152 without restraints) Performing minimization step: 2255. Total energy = 9242.8118 kcal/mol (9238.8291 without restraints) Performing minimization step: 2256. Total energy = 9239.7264 kcal/mol (9235.7442 without restraints) Performing minimization step: 2257. Total energy = 9236.6425 kcal/mol (9232.6607 without restraints) Performing minimization step: 2258. Total energy = 9233.5599 kcal/mol (9229.5786 without restraints) Performing minimization step: 2259. Total energy = 9230.4790 kcal/mol (9226.4982 without restraints) Performing minimization step: 2260. Total energy = 9227.3992 kcal/mol (9223.4189 without restraints) Performing minimization step: 2261. Total energy = 9224.3212 kcal/mol (9220.3413 without restraints) Performing minimization step: 2262. Total energy = 9221.2444 kcal/mol (9217.2651 without restraints) Performing minimization step: 2263. Total energy = 9218.1692 kcal/mol (9214.1903 without restraints) Performing minimization step: 2264. Total energy = 9215.0956 kcal/mol (9211.1174 without restraints) Performing minimization step: 2265. Total energy = 9212.0236 kcal/mol (9208.0456 without restraints) Performing minimization step: 2266. Total energy = 9208.9528 kcal/mol (9204.9753 without restraints) Performing minimization step: 2267. Total energy = 9205.8832 kcal/mol (9201.9061 without restraints) Performing minimization step: 2268. Total energy = 9202.8150 kcal/mol (9198.8384 without restraints) Performing minimization step: 2269. Total energy = 9199.7481 kcal/mol (9195.7719 without restraints) Performing minimization step: 2270. Total energy = 9196.6827 kcal/mol (9192.7071 without restraints) Performing minimization step: 2271. Total energy = 9193.6191 kcal/mol (9189.6440 without restraints) Performing minimization step: 2272. Total energy = 9190.5567 kcal/mol (9186.5820 without restraints) Performing minimization step: 2273. Total energy = 9187.4957 kcal/mol (9183.5215 without restraints) Performing minimization step: 2274. Total energy = 9184.4363 kcal/mol (9180.4626 without restraints) Performing minimization step: 2275. Total energy = 9181.3780 kcal/mol (9177.4048 without restraints) Performing minimization step: 2276. Total energy = 9178.3212 kcal/mol (9174.3486 without restraints) Performing minimization step: 2277. Total energy = 9175.2661 kcal/mol (9171.2937 without restraints) Performing minimization step: 2278. Total energy = 9172.2121 kcal/mol (9168.2404 without restraints) Performing minimization step: 2279. Total energy = 9169.1597 kcal/mol (9165.1883 without restraints) Performing minimization step: 2280. Total energy = 9166.1082 kcal/mol (9162.1372 without restraints) Performing minimization step: 2281. Total energy = 9163.0583 kcal/mol (9159.0877 without restraints) Performing minimization step: 2282. Total energy = 9160.0098 kcal/mol (9156.0398 without restraints) Performing minimization step: 2283. Total energy = 9156.9624 kcal/mol (9152.9928 without restraints) Performing minimization step: 2284. Total energy = 9153.9166 kcal/mol (9149.9475 without restraints) Performing minimization step: 2285. Total energy = 9150.8720 kcal/mol (9146.9034 without restraints) Performing minimization step: 2286. Total energy = 9147.8289 kcal/mol (9143.8607 without restraints) Performing minimization step: 2287. Total energy = 9144.7870 kcal/mol (9140.8192 without restraints) Performing minimization step: 2288. Total energy = 9141.7466 kcal/mol (9137.7794 without restraints) Performing minimization step: 2289. Total energy = 9138.7073 kcal/mol (9134.7405 without restraints) Performing minimization step: 2290. Total energy = 9135.6699 kcal/mol (9131.7035 without restraints) Performing minimization step: 2291. Total energy = 9132.6333 kcal/mol (9128.6674 without restraints) Performing minimization step: 2292. Total energy = 9129.5981 kcal/mol (9125.6326 without restraints) Performing minimization step: 2293. Total energy = 9126.5642 kcal/mol (9122.5993 without restraints) Performing minimization step: 2294. Total energy = 9123.5318 kcal/mol (9119.5672 without restraints) Performing minimization step: 2295. Total energy = 9120.5006 kcal/mol (9116.5365 without restraints) Performing minimization step: 2296. Total energy = 9117.4713 kcal/mol (9113.5076 without restraints) Performing minimization step: 2297. Total energy = 9114.4428 kcal/mol (9110.4797 without restraints) Performing minimization step: 2298. Total energy = 9111.4156 kcal/mol (9107.4527 without restraints) Performing minimization step: 2299. Total energy = 9108.3895 kcal/mol (9104.4271 without restraints) Performing minimization step: 2300. Total energy = 9105.3644 kcal/mol (9101.4026 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 9102.3408 kcal/mol (9098.3794 without restraints) Performing minimization step: 2302. Total energy = 9099.3187 kcal/mol (9095.3576 without restraints) Performing minimization step: 2303. Total energy = 9096.2980 kcal/mol (9092.3374 without restraints) Performing minimization step: 2304. Total energy = 9093.2784 kcal/mol (9089.3183 without restraints) Performing minimization step: 2305. Total energy = 9090.2598 kcal/mol (9086.3001 without restraints) Performing minimization step: 2306. Total energy = 9087.2425 kcal/mol (9083.2831 without restraints) Performing minimization step: 2307. Total energy = 9084.2267 kcal/mol (9080.2679 without restraints) Performing minimization step: 2308. Total energy = 9081.2122 kcal/mol (9077.2538 without restraints) Performing minimization step: 2309. Total energy = 9078.1989 kcal/mol (9074.2410 without restraints) Performing minimization step: 2310. Total energy = 9075.1864 kcal/mol (9071.2289 without restraints) Performing minimization step: 2311. Total energy = 9072.1756 kcal/mol (9068.2186 without restraints) Performing minimization step: 2312. Total energy = 9069.1664 kcal/mol (9065.2098 without restraints) Performing minimization step: 2313. Total energy = 9066.1581 kcal/mol (9062.2020 without restraints) Performing minimization step: 2314. Total energy = 9063.1514 kcal/mol (9059.1956 without restraints) Performing minimization step: 2315. Total energy = 9060.1456 kcal/mol (9056.1903 without restraints) Performing minimization step: 2316. Total energy = 9057.1411 kcal/mol (9053.1862 without restraints) Performing minimization step: 2317. Total energy = 9054.1374 kcal/mol (9050.1830 without restraints) Performing minimization step: 2318. Total energy = 9051.1355 kcal/mol (9047.1813 without restraints) Performing minimization step: 2319. Total energy = 9048.1346 kcal/mol (9044.1810 without restraints) Performing minimization step: 2320. Total energy = 9045.1349 kcal/mol (9041.1818 without restraints) Performing minimization step: 2321. Total energy = 9042.1363 kcal/mol (9038.1834 without restraints) Performing minimization step: 2322. Total energy = 9039.1389 kcal/mol (9035.1866 without restraints) Performing minimization step: 2323. Total energy = 9036.1430 kcal/mol (9032.1911 without restraints) Performing minimization step: 2324. Total energy = 9033.1484 kcal/mol (9029.1969 without restraints) Performing minimization step: 2325. Total energy = 9030.1548 kcal/mol (9026.2037 without restraints) Performing minimization step: 2326. Total energy = 9027.1630 kcal/mol (9023.2125 without restraints) Performing minimization step: 2327. Total energy = 9024.1719 kcal/mol (9020.2218 without restraints) Performing minimization step: 2328. Total energy = 9021.1821 kcal/mol (9017.2324 without restraints) Performing minimization step: 2329. Total energy = 9018.1937 kcal/mol (9014.2444 without restraints) Performing minimization step: 2330. Total energy = 9015.2061 kcal/mol (9011.2572 without restraints) Performing minimization step: 2331. Total energy = 9012.2199 kcal/mol (9008.2714 without restraints) Performing minimization step: 2332. Total energy = 9009.2345 kcal/mol (9005.2865 without restraints) Performing minimization step: 2333. Total energy = 9006.2503 kcal/mol (9002.3027 without restraints) Performing minimization step: 2334. Total energy = 9003.2674 kcal/mol (8999.3202 without restraints) Performing minimization step: 2335. Total energy = 9000.2853 kcal/mol (8996.3385 without restraints) Performing minimization step: 2336. Total energy = 8997.3048 kcal/mol (8993.3584 without restraints) Performing minimization step: 2337. Total energy = 8994.3253 kcal/mol (8990.3794 without restraints) Performing minimization step: 2338. Total energy = 8991.3471 kcal/mol (8987.4017 without restraints) Performing minimization step: 2339. Total energy = 8988.3700 kcal/mol (8984.4249 without restraints) Performing minimization step: 2340. Total energy = 8985.3939 kcal/mol (8981.4491 without restraints) Performing minimization step: 2341. Total energy = 8982.4189 kcal/mol (8978.4745 without restraints) Performing minimization step: 2342. Total energy = 8979.4451 kcal/mol (8975.5012 without restraints) Performing minimization step: 2343. Total energy = 8976.4728 kcal/mol (8972.5295 without restraints) Performing minimization step: 2344. Total energy = 8973.5017 kcal/mol (8969.5586 without restraints) Performing minimization step: 2345. Total energy = 8970.5313 kcal/mol (8966.5887 without restraints) Performing minimization step: 2346. Total energy = 8967.5625 kcal/mol (8963.6203 without restraints) Performing minimization step: 2347. Total energy = 8964.5942 kcal/mol (8960.6524 without restraints) Performing minimization step: 2348. Total energy = 8961.6278 kcal/mol (8957.6863 without restraints) Performing minimization step: 2349. Total energy = 8958.6620 kcal/mol (8954.7210 without restraints) Performing minimization step: 2350. Total energy = 8955.6974 kcal/mol (8951.7568 without restraints) Performing minimization step: 2351. Total energy = 8952.7340 kcal/mol (8948.7938 without restraints) Performing minimization step: 2352. Total energy = 8949.7713 kcal/mol (8945.8316 without restraints) Performing minimization step: 2353. Total energy = 8946.8097 kcal/mol (8942.8704 without restraints) Performing minimization step: 2354. Total energy = 8943.8498 kcal/mol (8939.9112 without restraints) Performing minimization step: 2355. Total energy = 8940.8909 kcal/mol (8936.9524 without restraints) Performing minimization step: 2356. Total energy = 8937.9329 kcal/mol (8933.9947 without restraints) Performing minimization step: 2357. Total energy = 8934.9757 kcal/mol (8931.0379 without restraints) Performing minimization step: 2358. Total energy = 8932.0198 kcal/mol (8928.0824 without restraints) Performing minimization step: 2359. Total energy = 8929.0652 kcal/mol (8925.1282 without restraints) Performing minimization step: 2360. Total energy = 8926.1115 kcal/mol (8922.1752 without restraints) Performing minimization step: 2361. Total energy = 8923.1588 kcal/mol (8919.2227 without restraints) Performing minimization step: 2362. Total energy = 8920.2073 kcal/mol (8916.2716 without restraints) Performing minimization step: 2363. Total energy = 8917.2570 kcal/mol (8913.3217 without restraints) Performing minimization step: 2364. Total energy = 8914.3077 kcal/mol (8910.3728 without restraints) Performing minimization step: 2365. Total energy = 8911.3595 kcal/mol (8907.4251 without restraints) Performing minimization step: 2366. Total energy = 8908.4122 kcal/mol (8904.4779 without restraints) Performing minimization step: 2367. Total energy = 8905.4659 kcal/mol (8901.5322 without restraints) Performing minimization step: 2368. Total energy = 8902.5209 kcal/mol (8898.5877 without restraints) Performing minimization step: 2369. Total energy = 8899.5767 kcal/mol (8895.6437 without restraints) Performing minimization step: 2370. Total energy = 8896.6340 kcal/mol (8892.7015 without restraints) Performing minimization step: 2371. Total energy = 8893.6922 kcal/mol (8889.7600 without restraints) Performing minimization step: 2372. Total energy = 8890.7518 kcal/mol (8886.8200 without restraints) Performing minimization step: 2373. Total energy = 8887.8123 kcal/mol (8883.8809 without restraints) Performing minimization step: 2374. Total energy = 8884.8737 kcal/mol (8880.9427 without restraints) Performing minimization step: 2375. Total energy = 8881.9358 kcal/mol (8878.0051 without restraints) Performing minimization step: 2376. Total energy = 8878.9989 kcal/mol (8875.0687 without restraints) Performing minimization step: 2377. Total energy = 8876.0634 kcal/mol (8872.1335 without restraints) Performing minimization step: 2378. Total energy = 8873.1289 kcal/mol (8869.1996 without restraints) Performing minimization step: 2379. Total energy = 8870.1953 kcal/mol (8866.2663 without restraints) Performing minimization step: 2380. Total energy = 8867.2626 kcal/mol (8863.3340 without restraints) Performing minimization step: 2381. Total energy = 8864.3308 kcal/mol (8860.4026 without restraints) Performing minimization step: 2382. Total energy = 8861.4005 kcal/mol (8857.4726 without restraints) Performing minimization step: 2383. Total energy = 8858.4716 kcal/mol (8854.5441 without restraints) Performing minimization step: 2384. Total energy = 8855.5434 kcal/mol (8851.6163 without restraints) Performing minimization step: 2385. Total energy = 8852.6161 kcal/mol (8848.6894 without restraints) Performing minimization step: 2386. Total energy = 8849.6897 kcal/mol (8845.7634 without restraints) Performing minimization step: 2387. Total energy = 8846.7646 kcal/mol (8842.8387 without restraints) Performing minimization step: 2388. Total energy = 8843.8401 kcal/mol (8839.9145 without restraints) Performing minimization step: 2389. Total energy = 8840.9171 kcal/mol (8836.9920 without restraints) Performing minimization step: 2390. Total energy = 8837.9949 kcal/mol (8834.0703 without restraints) Performing minimization step: 2391. Total energy = 8835.0739 kcal/mol (8831.1495 without restraints) Performing minimization step: 2392. Total energy = 8832.1533 kcal/mol (8828.2292 without restraints) Performing minimization step: 2393. Total energy = 8829.2337 kcal/mol (8825.3101 without restraints) Performing minimization step: 2394. Total energy = 8826.3153 kcal/mol (8822.3920 without restraints) Performing minimization step: 2395. Total energy = 8823.3980 kcal/mol (8819.4751 without restraints) Performing minimization step: 2396. Total energy = 8820.4815 kcal/mol (8816.5590 without restraints) Performing minimization step: 2397. Total energy = 8817.5659 kcal/mol (8813.6438 without restraints) Performing minimization step: 2398. Total energy = 8814.6510 kcal/mol (8810.7293 without restraints) Performing minimization step: 2399. Total energy = 8811.7376 kcal/mol (8807.8162 without restraints) Performing minimization step: 2400. Total energy = 8808.8250 kcal/mol (8804.9039 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 8805.9133 kcal/mol (8801.9927 without restraints) Performing minimization step: 2402. Total energy = 8803.0023 kcal/mol (8799.0821 without restraints) Performing minimization step: 2403. Total energy = 8800.0930 kcal/mol (8796.1731 without restraints) Performing minimization step: 2404. Total energy = 8797.1842 kcal/mol (8793.2647 without restraints) Performing minimization step: 2405. Total energy = 8794.2764 kcal/mol (8790.3573 without restraints) Performing minimization step: 2406. Total energy = 8791.3697 kcal/mol (8787.4510 without restraints) Performing minimization step: 2407. Total energy = 8788.4639 kcal/mol (8784.5456 without restraints) Performing minimization step: 2408. Total energy = 8785.5591 kcal/mol (8781.6410 without restraints) Performing minimization step: 2409. Total energy = 8782.6556 kcal/mol (8778.7382 without restraints) Performing minimization step: 2410. Total energy = 8779.7526 kcal/mol (8775.8352 without restraints) Performing minimization step: 2411. Total energy = 8776.8506 kcal/mol (8772.9338 without restraints) Performing minimization step: 2412. Total energy = 8773.9497 kcal/mol (8770.0332 without restraints) Performing minimization step: 2413. Total energy = 8771.0495 kcal/mol (8767.1332 without restraints) Performing minimization step: 2414. Total energy = 8768.1502 kcal/mol (8764.2344 without restraints) Performing minimization step: 2415. Total energy = 8765.2518 kcal/mol (8761.3364 without restraints) Performing minimization step: 2416. Total energy = 8762.3545 kcal/mol (8758.4395 without restraints) Performing minimization step: 2417. Total energy = 8759.4585 kcal/mol (8755.5440 without restraints) Performing minimization step: 2418. Total energy = 8756.5639 kcal/mol (8752.6495 without restraints) Performing minimization step: 2419. Total energy = 8753.6693 kcal/mol (8749.7554 without restraints) Performing minimization step: 2420. Total energy = 8750.7758 kcal/mol (8746.8623 without restraints) Performing minimization step: 2421. Total energy = 8747.8831 kcal/mol (8743.9698 without restraints) Performing minimization step: 2422. Total energy = 8744.9913 kcal/mol (8741.0785 without restraints) Performing minimization step: 2423. Total energy = 8742.1005 kcal/mol (8738.1881 without restraints) Performing minimization step: 2424. Total energy = 8739.2107 kcal/mol (8735.2985 without restraints) Performing minimization step: 2425. Total energy = 8736.3217 kcal/mol (8732.4100 without restraints) Performing minimization step: 2426. Total energy = 8733.4339 kcal/mol (8729.5226 without restraints) Performing minimization step: 2427. Total energy = 8730.5467 kcal/mol (8726.6357 without restraints) Performing minimization step: 2428. Total energy = 8727.6605 kcal/mol (8723.7498 without restraints) Performing minimization step: 2429. Total energy = 8724.7751 kcal/mol (8720.8648 without restraints) Performing minimization step: 2430. Total energy = 8721.8914 kcal/mol (8717.9814 without restraints) Performing minimization step: 2431. Total energy = 8719.0079 kcal/mol (8715.0984 without restraints) Performing minimization step: 2432. Total energy = 8716.1255 kcal/mol (8712.2163 without restraints) Performing minimization step: 2433. Total energy = 8713.2437 kcal/mol (8709.3349 without restraints) Performing minimization step: 2434. Total energy = 8710.3631 kcal/mol (8706.4546 without restraints) Performing minimization step: 2435. Total energy = 8707.4838 kcal/mol (8703.5757 without restraints) Performing minimization step: 2436. Total energy = 8704.6053 kcal/mol (8700.6976 without restraints) Performing minimization step: 2437. Total energy = 8701.7274 kcal/mol (8697.8200 without restraints) Performing minimization step: 2438. Total energy = 8698.8506 kcal/mol (8694.9435 without restraints) Performing minimization step: 2439. Total energy = 8695.9746 kcal/mol (8692.0681 without restraints) Performing minimization step: 2440. Total energy = 8693.0996 kcal/mol (8689.1932 without restraints) Performing minimization step: 2441. Total energy = 8690.2252 kcal/mol (8686.3192 without restraints) Performing minimization step: 2442. Total energy = 8687.3521 kcal/mol (8683.4464 without restraints) Performing minimization step: 2443. Total energy = 8684.4795 kcal/mol (8680.5742 without restraints) Performing minimization step: 2444. Total energy = 8681.6075 kcal/mol (8677.7026 without restraints) Performing minimization step: 2445. Total energy = 8678.7372 kcal/mol (8674.8327 without restraints) Performing minimization step: 2446. Total energy = 8675.8676 kcal/mol (8671.9635 without restraints) Performing minimization step: 2447. Total energy = 8672.9987 kcal/mol (8669.0947 without restraints) Performing minimization step: 2448. Total energy = 8670.1308 kcal/mol (8666.2273 without restraints) Performing minimization step: 2449. Total energy = 8667.2639 kcal/mol (8663.3608 without restraints) Performing minimization step: 2450. Total energy = 8664.3977 kcal/mol (8660.4949 without restraints) Performing minimization step: 2451. Total energy = 8661.5324 kcal/mol (8657.6298 without restraints) Performing minimization step: 2452. Total energy = 8658.6680 kcal/mol (8654.7659 without restraints) Performing minimization step: 2453. Total energy = 8655.8043 kcal/mol (8651.9025 without restraints) Performing minimization step: 2454. Total energy = 8652.9422 kcal/mol (8649.0410 without restraints) Performing minimization step: 2455. Total energy = 8650.0803 kcal/mol (8646.1793 without restraints) Performing minimization step: 2456. Total energy = 8647.2193 kcal/mol (8643.3186 without restraints) Performing minimization step: 2457. Total energy = 8644.3590 kcal/mol (8640.4587 without restraints) Performing minimization step: 2458. Total energy = 8641.4996 kcal/mol (8637.5996 without restraints) Performing minimization step: 2459. Total energy = 8638.6414 kcal/mol (8634.7418 without restraints) Performing minimization step: 2460. Total energy = 8635.7843 kcal/mol (8631.8850 without restraints) Performing minimization step: 2461. Total energy = 8632.9279 kcal/mol (8629.0289 without restraints) Performing minimization step: 2462. Total energy = 8630.0726 kcal/mol (8626.1740 without restraints) Performing minimization step: 2463. Total energy = 8627.2175 kcal/mol (8623.3192 without restraints) Performing minimization step: 2464. Total energy = 8624.3638 kcal/mol (8620.4660 without restraints) Performing minimization step: 2465. Total energy = 8621.5112 kcal/mol (8617.6136 without restraints) Performing minimization step: 2466. Total energy = 8618.6591 kcal/mol (8614.7618 without restraints) Performing minimization step: 2467. Total energy = 8615.8079 kcal/mol (8611.9110 without restraints) Performing minimization step: 2468. Total energy = 8612.9574 kcal/mol (8609.0609 without restraints) Performing minimization step: 2469. Total energy = 8610.1083 kcal/mol (8606.2121 without restraints) Performing minimization step: 2470. Total energy = 8607.2595 kcal/mol (8603.3637 without restraints) Performing minimization step: 2471. Total energy = 8604.4115 kcal/mol (8600.5160 without restraints) Performing minimization step: 2472. Total energy = 8601.5641 kcal/mol (8597.6689 without restraints) Performing minimization step: 2473. Total energy = 8598.7178 kcal/mol (8594.8231 without restraints) Performing minimization step: 2474. Total energy = 8595.8724 kcal/mol (8591.9780 without restraints) Performing minimization step: 2475. Total energy = 8593.0278 kcal/mol (8589.1337 without restraints) Performing minimization step: 2476. Total energy = 8590.1842 kcal/mol (8586.2903 without restraints) Performing minimization step: 2477. Total energy = 8587.3418 kcal/mol (8583.4483 without restraints) Performing minimization step: 2478. Total energy = 8584.5001 kcal/mol (8580.6070 without restraints) Performing minimization step: 2479. Total energy = 8581.6590 kcal/mol (8577.7663 without restraints) Performing minimization step: 2480. Total energy = 8578.8190 kcal/mol (8574.9266 without restraints) Performing minimization step: 2481. Total energy = 8575.9799 kcal/mol (8572.0878 without restraints) Performing minimization step: 2482. Total energy = 8573.1412 kcal/mol (8569.2495 without restraints) Performing minimization step: 2483. Total energy = 8570.3038 kcal/mol (8566.4124 without restraints) Performing minimization step: 2484. Total energy = 8567.4671 kcal/mol (8563.5760 without restraints) Performing minimization step: 2485. Total energy = 8564.6317 kcal/mol (8560.7411 without restraints) Performing minimization step: 2486. Total energy = 8561.7972 kcal/mol (8557.9068 without restraints) Performing minimization step: 2487. Total energy = 8558.9628 kcal/mol (8555.0728 without restraints) Performing minimization step: 2488. Total energy = 8556.1303 kcal/mol (8552.2405 without restraints) Performing minimization step: 2489. Total energy = 8553.2979 kcal/mol (8549.4085 without restraints) Performing minimization step: 2490. Total energy = 8550.4660 kcal/mol (8546.5769 without restraints) Performing minimization step: 2491. Total energy = 8547.6350 kcal/mol (8543.7463 without restraints) Performing minimization step: 2492. Total energy = 8544.8049 kcal/mol (8540.9164 without restraints) Performing minimization step: 2493. Total energy = 8541.9761 kcal/mol (8538.0882 without restraints) Performing minimization step: 2494. Total energy = 8539.1480 kcal/mol (8535.2603 without restraints) Performing minimization step: 2495. Total energy = 8536.3205 kcal/mol (8532.4331 without restraints) Performing minimization step: 2496. Total energy = 8533.4941 kcal/mol (8529.6071 without restraints) Performing minimization step: 2497. Total energy = 8530.6687 kcal/mol (8526.7820 without restraints) Performing minimization step: 2498. Total energy = 8527.8440 kcal/mol (8523.9576 without restraints) Performing minimization step: 2499. Total energy = 8525.0200 kcal/mol (8521.1339 without restraints) Performing minimization step: 2500. Total energy = 8522.1967 kcal/mol (8518.3110 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 8519.3744 kcal/mol (8515.4890 without restraints) Performing minimization step: 2502. Total energy = 8516.5530 kcal/mol (8512.6679 without restraints) Performing minimization step: 2503. Total energy = 8513.7323 kcal/mol (8509.8476 without restraints) Performing minimization step: 2504. Total energy = 8510.9127 kcal/mol (8507.0283 without restraints) Performing minimization step: 2505. Total energy = 8508.0938 kcal/mol (8504.2097 without restraints) Performing minimization step: 2506. Total energy = 8505.2757 kcal/mol (8501.3920 without restraints) Performing minimization step: 2507. Total energy = 8502.4583 kcal/mol (8498.5749 without restraints) Performing minimization step: 2508. Total energy = 8499.6418 kcal/mol (8495.7587 without restraints) Performing minimization step: 2509. Total energy = 8496.8260 kcal/mol (8492.9433 without restraints) Performing minimization step: 2510. Total energy = 8494.0112 kcal/mol (8490.1288 without restraints) Performing minimization step: 2511. Total energy = 8491.1974 kcal/mol (8487.3153 without restraints) Performing minimization step: 2512. Total energy = 8488.3838 kcal/mol (8484.5021 without restraints) Performing minimization step: 2513. Total energy = 8485.5717 kcal/mol (8481.6902 without restraints) Performing minimization step: 2514. Total energy = 8482.7600 kcal/mol (8478.8789 without restraints) Performing minimization step: 2515. Total energy = 8479.9495 kcal/mol (8476.0687 without restraints) Performing minimization step: 2516. Total energy = 8477.1398 kcal/mol (8473.2594 without restraints) Performing minimization step: 2517. Total energy = 8474.3308 kcal/mol (8470.4506 without restraints) Performing minimization step: 2518. Total energy = 8471.5231 kcal/mol (8467.6434 without restraints) Performing minimization step: 2519. Total energy = 8468.7164 kcal/mol (8464.8370 without restraints) Performing minimization step: 2520. Total energy = 8465.9101 kcal/mol (8462.0310 without restraints) Performing minimization step: 2521. Total energy = 8463.1050 kcal/mol (8459.2262 without restraints) Performing minimization step: 2522. Total energy = 8460.3005 kcal/mol (8456.4220 without restraints) Performing minimization step: 2523. Total energy = 8457.4972 kcal/mol (8453.6192 without restraints) Performing minimization step: 2524. Total energy = 8454.6945 kcal/mol (8450.8168 without restraints) Performing minimization step: 2525. Total energy = 8451.8925 kcal/mol (8448.0150 without restraints) Performing minimization step: 2526. Total energy = 8449.0912 kcal/mol (8445.2141 without restraints) Performing minimization step: 2527. Total energy = 8446.2909 kcal/mol (8442.4142 without restraints) Performing minimization step: 2528. Total energy = 8443.4912 kcal/mol (8439.6148 without restraints) Performing minimization step: 2529. Total energy = 8440.6925 kcal/mol (8436.8164 without restraints) Performing minimization step: 2530. Total energy = 8437.8944 kcal/mol (8434.0185 without restraints) Performing minimization step: 2531. Total energy = 8435.0977 kcal/mol (8431.2222 without restraints) Performing minimization step: 2532. Total energy = 8432.3012 kcal/mol (8428.4260 without restraints) Performing minimization step: 2533. Total energy = 8429.5059 kcal/mol (8425.6310 without restraints) Performing minimization step: 2534. Total energy = 8426.7117 kcal/mol (8422.8372 without restraints) Performing minimization step: 2535. Total energy = 8423.9179 kcal/mol (8420.0436 without restraints) Performing minimization step: 2536. Total energy = 8421.1252 kcal/mol (8417.2513 without restraints) Performing minimization step: 2537. Total energy = 8418.3334 kcal/mol (8414.4598 without restraints) Performing minimization step: 2538. Total energy = 8415.5425 kcal/mol (8411.6695 without restraints) Performing minimization step: 2539. Total energy = 8412.7520 kcal/mol (8408.8791 without restraints) Performing minimization step: 2540. Total energy = 8409.9626 kcal/mol (8406.0900 without restraints) Performing minimization step: 2541. Total energy = 8407.1742 kcal/mol (8403.3019 without restraints) Performing minimization step: 2542. Total energy = 8404.3864 kcal/mol (8400.5144 without restraints) Performing minimization step: 2543. Total energy = 8401.6001 kcal/mol (8397.7284 without restraints) Performing minimization step: 2544. Total energy = 8398.8142 kcal/mol (8394.9429 without restraints) Performing minimization step: 2545. Total energy = 8396.0293 kcal/mol (8392.1583 without restraints) Performing minimization step: 2546. Total energy = 8393.2444 kcal/mol (8389.3738 without restraints) Performing minimization step: 2547. Total energy = 8390.4609 kcal/mol (8386.5905 without restraints) Performing minimization step: 2548. Total energy = 8387.6780 kcal/mol (8383.8080 without restraints) Performing minimization step: 2549. Total energy = 8384.8962 kcal/mol (8381.0265 without restraints) Performing minimization step: 2550. Total energy = 8382.1158 kcal/mol (8378.2466 without restraints) Performing minimization step: 2551. Total energy = 8379.3361 kcal/mol (8375.4670 without restraints) Performing minimization step: 2552. Total energy = 8376.5572 kcal/mol (8372.6884 without restraints) Performing minimization step: 2553. Total energy = 8373.7787 kcal/mol (8369.9102 without restraints) Performing minimization step: 2554. Total energy = 8371.0011 kcal/mol (8367.1330 without restraints) Performing minimization step: 2555. Total energy = 8368.2246 kcal/mol (8364.3569 without restraints) Performing minimization step: 2556. Total energy = 8365.4488 kcal/mol (8361.5814 without restraints) Performing minimization step: 2557. Total energy = 8362.6735 kcal/mol (8358.8064 without restraints) Performing minimization step: 2558. Total energy = 8359.8992 kcal/mol (8356.0324 without restraints) Performing minimization step: 2559. Total energy = 8357.1258 kcal/mol (8353.2593 without restraints) Performing minimization step: 2560. Total energy = 8354.3535 kcal/mol (8350.4873 without restraints) Performing minimization step: 2561. Total energy = 8351.5820 kcal/mol (8347.7161 without restraints) Performing minimization step: 2562. Total energy = 8348.8113 kcal/mol (8344.9457 without restraints) Performing minimization step: 2563. Total energy = 8346.0413 kcal/mol (8342.1761 without restraints) Performing minimization step: 2564. Total energy = 8343.2722 kcal/mol (8339.4073 without restraints) Performing minimization step: 2565. Total energy = 8340.5042 kcal/mol (8336.6397 without restraints) Performing minimization step: 2566. Total energy = 8337.7370 kcal/mol (8333.8727 without restraints) Performing minimization step: 2567. Total energy = 8334.9704 kcal/mol (8331.1065 without restraints) Performing minimization step: 2568. Total energy = 8332.2055 kcal/mol (8328.3417 without restraints) Performing minimization step: 2569. Total energy = 8329.4407 kcal/mol (8325.5774 without restraints) Performing minimization step: 2570. Total energy = 8326.6765 kcal/mol (8322.8134 without restraints) Performing minimization step: 2571. Total energy = 8323.9132 kcal/mol (8320.0505 without restraints) Performing minimization step: 2572. Total energy = 8321.1513 kcal/mol (8317.2889 without restraints) Performing minimization step: 2573. Total energy = 8318.3899 kcal/mol (8314.5278 without restraints) Performing minimization step: 2574. Total energy = 8315.6294 kcal/mol (8311.7677 without restraints) Performing minimization step: 2575. Total energy = 8312.8695 kcal/mol (8309.0081 without restraints) Performing minimization step: 2576. Total energy = 8310.1104 kcal/mol (8306.2492 without restraints) Performing minimization step: 2577. Total energy = 8307.3522 kcal/mol (8303.4914 without restraints) Performing minimization step: 2578. Total energy = 8304.5948 kcal/mol (8300.7344 without restraints) Performing minimization step: 2579. Total energy = 8301.8385 kcal/mol (8297.9783 without restraints) Performing minimization step: 2580. Total energy = 8299.0832 kcal/mol (8295.2233 without restraints) Performing minimization step: 2581. Total energy = 8296.3287 kcal/mol (8292.4692 without restraints) Performing minimization step: 2582. Total energy = 8293.5750 kcal/mol (8289.7158 without restraints) Performing minimization step: 2583. Total energy = 8290.8222 kcal/mol (8286.9632 without restraints) Performing minimization step: 2584. Total energy = 8288.0702 kcal/mol (8284.2117 without restraints) Performing minimization step: 2585. Total energy = 8285.3196 kcal/mol (8281.4613 without restraints) Performing minimization step: 2586. Total energy = 8282.5695 kcal/mol (8278.7116 without restraints) Performing minimization step: 2587. Total energy = 8279.8202 kcal/mol (8275.9625 without restraints) Performing minimization step: 2588. Total energy = 8277.0720 kcal/mol (8273.2148 without restraints) Performing minimization step: 2589. Total energy = 8274.3244 kcal/mol (8270.4674 without restraints) Performing minimization step: 2590. Total energy = 8271.5776 kcal/mol (8267.7209 without restraints) Performing minimization step: 2591. Total energy = 8268.8319 kcal/mol (8264.9755 without restraints) Performing minimization step: 2592. Total energy = 8266.0870 kcal/mol (8262.2309 without restraints) Performing minimization step: 2593. Total energy = 8263.3431 kcal/mol (8259.4873 without restraints) Performing minimization step: 2594. Total energy = 8260.5996 kcal/mol (8256.7441 without restraints) Performing minimization step: 2595. Total energy = 8257.8577 kcal/mol (8254.0026 without restraints) Performing minimization step: 2596. Total energy = 8255.1162 kcal/mol (8251.2613 without restraints) Performing minimization step: 2597. Total energy = 8252.3757 kcal/mol (8248.5212 without restraints) Performing minimization step: 2598. Total energy = 8249.6363 kcal/mol (8245.7820 without restraints) Performing minimization step: 2599. Total energy = 8246.8975 kcal/mol (8243.0436 without restraints) Performing minimization step: 2600. Total energy = 8244.1595 kcal/mol (8240.3057 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 8241.4223 kcal/mol (8237.5690 without restraints) Performing minimization step: 2602. Total energy = 8238.6868 kcal/mol (8234.8338 without restraints) Performing minimization step: 2603. Total energy = 8235.9512 kcal/mol (8232.0985 without restraints) Performing minimization step: 2604. Total energy = 8233.2167 kcal/mol (8229.3645 without restraints) Performing minimization step: 2605. Total energy = 8230.4832 kcal/mol (8226.6311 without restraints) Performing minimization step: 2606. Total energy = 8227.7501 kcal/mol (8223.8984 without restraints) Performing minimization step: 2607. Total energy = 8225.0182 kcal/mol (8221.1667 without restraints) Performing minimization step: 2608. Total energy = 8222.2874 kcal/mol (8218.4363 without restraints) Performing minimization step: 2609. Total energy = 8219.5573 kcal/mol (8215.7066 without restraints) Performing minimization step: 2610. Total energy = 8216.8285 kcal/mol (8212.9781 without restraints) Performing minimization step: 2611. Total energy = 8214.1002 kcal/mol (8210.2500 without restraints) Performing minimization step: 2612. Total energy = 8211.3729 kcal/mol (8207.5230 without restraints) Performing minimization step: 2613. Total energy = 8208.6463 kcal/mol (8204.7967 without restraints) Performing minimization step: 2614. Total energy = 8205.9205 kcal/mol (8202.0713 without restraints) Performing minimization step: 2615. Total energy = 8203.1959 kcal/mol (8199.3469 without restraints) Performing minimization step: 2616. Total energy = 8200.4719 kcal/mol (8196.6233 without restraints) Performing minimization step: 2617. Total energy = 8197.7491 kcal/mol (8193.9008 without restraints) Performing minimization step: 2618. Total energy = 8195.0269 kcal/mol (8191.1789 without restraints) Performing minimization step: 2619. Total energy = 8192.3057 kcal/mol (8188.4580 without restraints) Performing minimization step: 2620. Total energy = 8189.5852 kcal/mol (8185.7376 without restraints) Performing minimization step: 2621. Total energy = 8186.8656 kcal/mol (8183.0186 without restraints) Performing minimization step: 2622. Total energy = 8184.1473 kcal/mol (8180.3006 without restraints) Performing minimization step: 2623. Total energy = 8181.4300 kcal/mol (8177.5836 without restraints) Performing minimization step: 2624. Total energy = 8178.7134 kcal/mol (8174.8673 without restraints) Performing minimization step: 2625. Total energy = 8175.9976 kcal/mol (8172.1519 without restraints) Performing minimization step: 2626. Total energy = 8173.2828 kcal/mol (8169.4372 without restraints) Performing minimization step: 2627. Total energy = 8170.5684 kcal/mol (8166.7232 without restraints) Performing minimization step: 2628. Total energy = 8167.8554 kcal/mol (8164.0104 without restraints) Performing minimization step: 2629. Total energy = 8165.1425 kcal/mol (8161.2979 without restraints) Performing minimization step: 2630. Total energy = 8162.4305 kcal/mol (8158.5861 without restraints) Performing minimization step: 2631. Total energy = 8159.7200 kcal/mol (8155.8760 without restraints) Performing minimization step: 2632. Total energy = 8157.0105 kcal/mol (8153.1668 without restraints) Performing minimization step: 2633. Total energy = 8154.3016 kcal/mol (8150.4582 without restraints) Performing minimization step: 2634. Total energy = 8151.5938 kcal/mol (8147.7507 without restraints) Performing minimization step: 2635. Total energy = 8148.8869 kcal/mol (8145.0441 without restraints) Performing minimization step: 2636. Total energy = 8146.1810 kcal/mol (8142.3387 without restraints) Performing minimization step: 2637. Total energy = 8143.4761 kcal/mol (8139.6339 without restraints) Performing minimization step: 2638. Total energy = 8140.7721 kcal/mol (8136.9302 without restraints) Performing minimization step: 2639. Total energy = 8138.0694 kcal/mol (8134.2279 without restraints) Performing minimization step: 2640. Total energy = 8135.3673 kcal/mol (8131.5261 without restraints) Performing minimization step: 2641. Total energy = 8132.6662 kcal/mol (8128.8253 without restraints) Performing minimization step: 2642. Total energy = 8129.9658 kcal/mol (8126.1252 without restraints) Performing minimization step: 2643. Total energy = 8127.2663 kcal/mol (8123.4260 without restraints) Performing minimization step: 2644. Total energy = 8124.5677 kcal/mol (8120.7277 without restraints) Performing minimization step: 2645. Total energy = 8121.8699 kcal/mol (8118.0302 without restraints) Performing minimization step: 2646. Total energy = 8119.1731 kcal/mol (8115.3337 without restraints) Performing minimization step: 2647. Total energy = 8116.4775 kcal/mol (8112.6384 without restraints) Performing minimization step: 2648. Total energy = 8113.7826 kcal/mol (8109.9439 without restraints) Performing minimization step: 2649. Total energy = 8111.0886 kcal/mol (8107.2501 without restraints) Performing minimization step: 2650. Total energy = 8108.3953 kcal/mol (8104.5571 without restraints) Performing minimization step: 2651. Total energy = 8105.7030 kcal/mol (8101.8649 without restraints) Performing minimization step: 2652. Total energy = 8103.0114 kcal/mol (8099.1737 without restraints) Performing minimization step: 2653. Total energy = 8100.3213 kcal/mol (8096.4841 without restraints) Performing minimization step: 2654. Total energy = 8097.6325 kcal/mol (8093.7955 without restraints) Performing minimization step: 2655. Total energy = 8094.9440 kcal/mol (8091.1073 without restraints) Performing minimization step: 2656. Total energy = 8092.2565 kcal/mol (8088.4201 without restraints) Performing minimization step: 2657. Total energy = 8089.5702 kcal/mol (8085.7342 without restraints) Performing minimization step: 2658. Total energy = 8086.8845 kcal/mol (8083.0488 without restraints) Performing minimization step: 2659. Total energy = 8084.1998 kcal/mol (8080.3644 without restraints) Performing minimization step: 2660. Total energy = 8081.5159 kcal/mol (8077.6806 without restraints) Performing minimization step: 2661. Total energy = 8078.8329 kcal/mol (8074.9981 without restraints) Performing minimization step: 2662. Total energy = 8076.1513 kcal/mol (8072.3168 without restraints) Performing minimization step: 2663. Total energy = 8073.4703 kcal/mol (8069.6361 without restraints) Performing minimization step: 2664. Total energy = 8070.7900 kcal/mol (8066.9561 without restraints) Performing minimization step: 2665. Total energy = 8068.1108 kcal/mol (8064.2772 without restraints) Performing minimization step: 2666. Total energy = 8065.4325 kcal/mol (8061.5992 without restraints) Performing minimization step: 2667. Total energy = 8062.7552 kcal/mol (8058.9222 without restraints) Performing minimization step: 2668. Total energy = 8060.0789 kcal/mol (8056.2462 without restraints) Performing minimization step: 2669. Total energy = 8057.4038 kcal/mol (8053.5714 without restraints) Performing minimization step: 2670. Total energy = 8054.7296 kcal/mol (8050.8975 without restraints) Performing minimization step: 2671. Total energy = 8052.0566 kcal/mol (8048.2250 without restraints) Performing minimization step: 2672. Total energy = 8049.3843 kcal/mol (8045.5528 without restraints) Performing minimization step: 2673. Total energy = 8046.7129 kcal/mol (8042.8818 without restraints) Performing minimization step: 2674. Total energy = 8044.0423 kcal/mol (8040.2114 without restraints) Performing minimization step: 2675. Total energy = 8041.3728 kcal/mol (8037.5423 without restraints) Performing minimization step: 2676. Total energy = 8038.7044 kcal/mol (8034.8741 without restraints) Performing minimization step: 2677. Total energy = 8036.0366 kcal/mol (8032.2067 without restraints) Performing minimization step: 2678. Total energy = 8033.3698 kcal/mol (8029.5402 without restraints) Performing minimization step: 2679. Total energy = 8030.7040 kcal/mol (8026.8747 without restraints) Performing minimization step: 2680. Total energy = 8028.0389 kcal/mol (8024.2099 without restraints) Performing minimization step: 2681. Total energy = 8025.3753 kcal/mol (8021.5465 without restraints) Performing minimization step: 2682. Total energy = 8022.7125 kcal/mol (8018.8841 without restraints) Performing minimization step: 2683. Total energy = 8020.0507 kcal/mol (8016.2228 without restraints) Performing minimization step: 2684. Total energy = 8017.3902 kcal/mol (8013.5624 without restraints) Performing minimization step: 2685. Total energy = 8014.7305 kcal/mol (8010.9031 without restraints) Performing minimization step: 2686. Total energy = 8012.0713 kcal/mol (8008.2441 without restraints) Performing minimization step: 2687. Total energy = 8009.4132 kcal/mol (8005.5863 without restraints) Performing minimization step: 2688. Total energy = 8006.7560 kcal/mol (8002.9294 without restraints) Performing minimization step: 2689. Total energy = 8004.0998 kcal/mol (8000.2735 without restraints) Performing minimization step: 2690. Total energy = 8001.4448 kcal/mol (7997.6188 without restraints) Performing minimization step: 2691. Total energy = 7998.7907 kcal/mol (7994.9650 without restraints) Performing minimization step: 2692. Total energy = 7996.1374 kcal/mol (7992.3120 without restraints) Performing minimization step: 2693. Total energy = 7993.4852 kcal/mol (7989.6602 without restraints) Performing minimization step: 2694. Total energy = 7990.8337 kcal/mol (7987.0089 without restraints) Performing minimization step: 2695. Total energy = 7988.1838 kcal/mol (7984.3593 without restraints) Performing minimization step: 2696. Total energy = 7985.5346 kcal/mol (7981.7104 without restraints) Performing minimization step: 2697. Total energy = 7982.8860 kcal/mol (7979.0622 without restraints) Performing minimization step: 2698. Total energy = 7980.2384 kcal/mol (7976.4148 without restraints) Performing minimization step: 2699. Total energy = 7977.5927 kcal/mol (7973.7694 without restraints) Performing minimization step: 2700. Total energy = 7974.9472 kcal/mol (7971.1242 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 7972.3030 kcal/mol (7968.4803 without restraints) Performing minimization step: 2702. Total energy = 7969.6595 kcal/mol (7965.8371 without restraints) Performing minimization step: 2703. Total energy = 7967.0170 kcal/mol (7963.1950 without restraints) Performing minimization step: 2704. Total energy = 7964.3755 kcal/mol (7960.5537 without restraints) Performing minimization step: 2705. Total energy = 7961.7351 kcal/mol (7957.9137 without restraints) Performing minimization step: 2706. Total energy = 7959.0957 kcal/mol (7955.2745 without restraints) Performing minimization step: 2707. Total energy = 7956.4569 kcal/mol (7952.6360 without restraints) Performing minimization step: 2708. Total energy = 7953.8193 kcal/mol (7949.9988 without restraints) Performing minimization step: 2709. Total energy = 7951.1827 kcal/mol (7947.3625 without restraints) Performing minimization step: 2710. Total energy = 7948.5472 kcal/mol (7944.7272 without restraints) Performing minimization step: 2711. Total energy = 7945.9126 kcal/mol (7942.0930 without restraints) Performing minimization step: 2712. Total energy = 7943.2793 kcal/mol (7939.4599 without restraints) Performing minimization step: 2713. Total energy = 7940.6468 kcal/mol (7936.8280 without restraints) Performing minimization step: 2714. Total energy = 7938.0155 kcal/mol (7934.1967 without restraints) Performing minimization step: 2715. Total energy = 7935.3849 kcal/mol (7931.5665 without restraints) Performing minimization step: 2716. Total energy = 7932.7550 kcal/mol (7928.9370 without restraints) Performing minimization step: 2717. Total energy = 7930.1269 kcal/mol (7926.3090 without restraints) Performing minimization step: 2718. Total energy = 7927.4992 kcal/mol (7923.6817 without restraints) Performing minimization step: 2719. Total energy = 7924.8728 kcal/mol (7921.0557 without restraints) Performing minimization step: 2720. Total energy = 7922.2473 kcal/mol (7918.4303 without restraints) Performing minimization step: 2721. Total energy = 7919.6228 kcal/mol (7915.8063 without restraints) Performing minimization step: 2722. Total energy = 7916.9993 kcal/mol (7913.1830 without restraints) Performing minimization step: 2723. Total energy = 7914.3767 kcal/mol (7910.5607 without restraints) Performing minimization step: 2724. Total energy = 7911.7552 kcal/mol (7907.9395 without restraints) Performing minimization step: 2725. Total energy = 7909.1348 kcal/mol (7905.3195 without restraints) Performing minimization step: 2726. Total energy = 7906.5154 kcal/mol (7902.7003 without restraints) Performing minimization step: 2727. Total energy = 7903.8971 kcal/mol (7900.0823 without restraints) Performing minimization step: 2728. Total energy = 7901.2794 kcal/mol (7897.4650 without restraints) Performing minimization step: 2729. Total energy = 7898.6632 kcal/mol (7894.8490 without restraints) Performing minimization step: 2730. Total energy = 7896.0484 kcal/mol (7892.2345 without restraints) Performing minimization step: 2731. Total energy = 7893.4343 kcal/mol (7889.6208 without restraints) Performing minimization step: 2732. Total energy = 7890.8209 kcal/mol (7887.0075 without restraints) Performing minimization step: 2733. Total energy = 7888.2086 kcal/mol (7884.3956 without restraints) Performing minimization step: 2734. Total energy = 7885.5973 kcal/mol (7881.7846 without restraints) Performing minimization step: 2735. Total energy = 7882.9870 kcal/mol (7879.1746 without restraints) Performing minimization step: 2736. Total energy = 7880.3778 kcal/mol (7876.5657 without restraints) Performing minimization step: 2737. Total energy = 7877.7697 kcal/mol (7873.9579 without restraints) Performing minimization step: 2738. Total energy = 7875.1625 kcal/mol (7871.3512 without restraints) Performing minimization step: 2739. Total energy = 7872.5565 kcal/mol (7868.7453 without restraints) Performing minimization step: 2740. Total energy = 7869.9511 kcal/mol (7866.1402 without restraints) Performing minimization step: 2741. Total energy = 7867.3473 kcal/mol (7863.5368 without restraints) Performing minimization step: 2742. Total energy = 7864.7443 kcal/mol (7860.9340 without restraints) Performing minimization step: 2743. Total energy = 7862.1422 kcal/mol (7858.3323 without restraints) Performing minimization step: 2744. Total energy = 7859.5413 kcal/mol (7855.7317 without restraints) Performing minimization step: 2745. Total energy = 7856.9418 kcal/mol (7853.1325 without restraints) Performing minimization step: 2746. Total energy = 7854.3431 kcal/mol (7850.5340 without restraints) Performing minimization step: 2747. Total energy = 7851.7454 kcal/mol (7847.9366 without restraints) Performing minimization step: 2748. Total energy = 7849.1487 kcal/mol (7845.3403 without restraints) Performing minimization step: 2749. Total energy = 7846.5528 kcal/mol (7842.7446 without restraints) Performing minimization step: 2750. Total energy = 7843.9584 kcal/mol (7840.1505 without restraints) Performing minimization step: 2751. Total energy = 7841.3646 kcal/mol (7837.5569 without restraints) Performing minimization step: 2752. Total energy = 7838.7722 kcal/mol (7834.9650 without restraints) Performing minimization step: 2753. Total energy = 7836.1806 kcal/mol (7832.3737 without restraints) Performing minimization step: 2754. Total energy = 7833.5899 kcal/mol (7829.7832 without restraints) Performing minimization step: 2755. Total energy = 7831.0002 kcal/mol (7827.1938 without restraints) Performing minimization step: 2756. Total energy = 7828.4119 kcal/mol (7824.6059 without restraints) Performing minimization step: 2757. Total energy = 7825.8243 kcal/mol (7822.0185 without restraints) Performing minimization step: 2758. Total energy = 7823.2378 kcal/mol (7819.4323 without restraints) Performing minimization step: 2759. Total energy = 7820.6527 kcal/mol (7816.8477 without restraints) Performing minimization step: 2760. Total energy = 7818.0687 kcal/mol (7814.2640 without restraints) Performing minimization step: 2761. Total energy = 7815.4856 kcal/mol (7811.6810 without restraints) Performing minimization step: 2762. Total energy = 7812.9034 kcal/mol (7809.0992 without restraints) Performing minimization step: 2763. Total energy = 7810.3223 kcal/mol (7806.5184 without restraints) Performing minimization step: 2764. Total energy = 7807.7423 kcal/mol (7803.9388 without restraints) Performing minimization step: 2765. Total energy = 7805.1634 kcal/mol (7801.3600 without restraints) Performing minimization step: 2766. Total energy = 7802.5855 kcal/mol (7798.7824 without restraints) Performing minimization step: 2767. Total energy = 7800.0086 kcal/mol (7796.2059 without restraints) Performing minimization step: 2768. Total energy = 7797.4328 kcal/mol (7793.6304 without restraints) Performing minimization step: 2769. Total energy = 7794.8581 kcal/mol (7791.0559 without restraints) Performing minimization step: 2770. Total energy = 7792.2850 kcal/mol (7788.4832 without restraints) Performing minimization step: 2771. Total energy = 7789.7124 kcal/mol (7785.9109 without restraints) Performing minimization step: 2772. Total energy = 7787.1410 kcal/mol (7783.3397 without restraints) Performing minimization step: 2773. Total energy = 7784.5705 kcal/mol (7780.7696 without restraints) Performing minimization step: 2774. Total energy = 7782.0010 kcal/mol (7778.2003 without restraints) Performing minimization step: 2775. Total energy = 7779.4325 kcal/mol (7775.6320 without restraints) Performing minimization step: 2776. Total energy = 7776.8647 kcal/mol (7773.0646 without restraints) Performing minimization step: 2777. Total energy = 7774.2985 kcal/mol (7770.4987 without restraints) Performing minimization step: 2778. Total energy = 7771.7338 kcal/mol (7767.9344 without restraints) Performing minimization step: 2779. Total energy = 7769.1699 kcal/mol (7765.3707 without restraints) Performing minimization step: 2780. Total energy = 7766.6071 kcal/mol (7762.8082 without restraints) Performing minimization step: 2781. Total energy = 7764.0453 kcal/mol (7760.2467 without restraints) Performing minimization step: 2782. Total energy = 7761.4845 kcal/mol (7757.6862 without restraints) Performing minimization step: 2783. Total energy = 7758.9249 kcal/mol (7755.1270 without restraints) Performing minimization step: 2784. Total energy = 7756.3663 kcal/mol (7752.5687 without restraints) Performing minimization step: 2785. Total energy = 7753.8093 kcal/mol (7750.0120 without restraints) Performing minimization step: 2786. Total energy = 7751.2533 kcal/mol (7747.4562 without restraints) Performing minimization step: 2787. Total energy = 7748.6975 kcal/mol (7744.9007 without restraints) Performing minimization step: 2788. Total energy = 7746.1433 kcal/mol (7742.3469 without restraints) Performing minimization step: 2789. Total energy = 7743.5901 kcal/mol (7739.7939 without restraints) Performing minimization step: 2790. Total energy = 7741.0381 kcal/mol (7737.2423 without restraints) Performing minimization step: 2791. Total energy = 7738.4872 kcal/mol (7734.6916 without restraints) Performing minimization step: 2792. Total energy = 7735.9373 kcal/mol (7732.1420 without restraints) Performing minimization step: 2793. Total energy = 7733.3887 kcal/mol (7729.5937 without restraints) Performing minimization step: 2794. Total energy = 7730.8410 kcal/mol (7727.0463 without restraints) Performing minimization step: 2795. Total energy = 7728.2943 kcal/mol (7724.5000 without restraints) Performing minimization step: 2796. Total energy = 7725.7490 kcal/mol (7721.9549 without restraints) Performing minimization step: 2797. Total energy = 7723.2044 kcal/mol (7719.4106 without restraints) Performing minimization step: 2798. Total energy = 7720.6615 kcal/mol (7716.8682 without restraints) Performing minimization step: 2799. Total energy = 7718.1196 kcal/mol (7714.3264 without restraints) Performing minimization step: 2800. Total energy = 7715.5786 kcal/mol (7711.7859 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 7713.0387 kcal/mol (7709.2462 without restraints) Performing minimization step: 2802. Total energy = 7710.4998 kcal/mol (7706.7076 without restraints) Performing minimization step: 2803. Total energy = 7707.9620 kcal/mol (7704.1701 without restraints) Performing minimization step: 2804. Total energy = 7705.4250 kcal/mol (7701.6333 without restraints) Performing minimization step: 2805. Total energy = 7702.8894 kcal/mol (7699.0980 without restraints) Performing minimization step: 2806. Total energy = 7700.3547 kcal/mol (7696.5636 without restraints) Performing minimization step: 2807. Total energy = 7697.8217 kcal/mol (7694.0309 without restraints) Performing minimization step: 2808. Total energy = 7695.2898 kcal/mol (7691.4992 without restraints) Performing minimization step: 2809. Total energy = 7692.7585 kcal/mol (7688.9683 without restraints) Performing minimization step: 2810. Total energy = 7690.2285 kcal/mol (7686.4387 without restraints) Performing minimization step: 2811. Total energy = 7687.6996 kcal/mol (7683.9100 without restraints) Performing minimization step: 2812. Total energy = 7685.1718 kcal/mol (7681.3826 without restraints) Performing minimization step: 2813. Total energy = 7682.6452 kcal/mol (7678.8562 without restraints) Performing minimization step: 2814. Total energy = 7680.1197 kcal/mol (7676.3311 without restraints) Performing minimization step: 2815. Total energy = 7677.5953 kcal/mol (7673.8069 without restraints) Performing minimization step: 2816. Total energy = 7675.0717 kcal/mol (7671.2835 without restraints) Performing minimization step: 2817. Total energy = 7672.5492 kcal/mol (7668.7614 without restraints) Performing minimization step: 2818. Total energy = 7670.0282 kcal/mol (7666.2407 without restraints) Performing minimization step: 2819. Total energy = 7667.5080 kcal/mol (7663.7208 without restraints) Performing minimization step: 2820. Total energy = 7664.9893 kcal/mol (7661.2025 without restraints) Performing minimization step: 2821. Total energy = 7662.4717 kcal/mol (7658.6851 without restraints) Performing minimization step: 2822. Total energy = 7659.9550 kcal/mol (7656.1686 without restraints) Performing minimization step: 2823. Total energy = 7657.4397 kcal/mol (7653.6537 without restraints) Performing minimization step: 2824. Total energy = 7654.9251 kcal/mol (7651.1394 without restraints) Performing minimization step: 2825. Total energy = 7652.4123 kcal/mol (7648.6269 without restraints) Performing minimization step: 2826. Total energy = 7649.9011 kcal/mol (7646.1161 without restraints) Performing minimization step: 2827. Total energy = 7647.3905 kcal/mol (7643.6057 without restraints) Performing minimization step: 2828. Total energy = 7644.8807 kcal/mol (7641.0962 without restraints) Performing minimization step: 2829. Total energy = 7642.3720 kcal/mol (7638.5879 without restraints) Performing minimization step: 2830. Total energy = 7639.8643 kcal/mol (7636.0804 without restraints) Performing minimization step: 2831. Total energy = 7637.3578 kcal/mol (7633.5741 without restraints) Performing minimization step: 2832. Total energy = 7634.8526 kcal/mol (7631.0691 without restraints) Performing minimization step: 2833. Total energy = 7632.3481 kcal/mol (7628.5651 without restraints) Performing minimization step: 2834. Total energy = 7629.8451 kcal/mol (7626.0624 without restraints) Performing minimization step: 2835. Total energy = 7627.3433 kcal/mol (7623.5609 without restraints) Performing minimization step: 2836. Total energy = 7624.8426 kcal/mol (7621.0604 without restraints) Performing minimization step: 2837. Total energy = 7622.3432 kcal/mol (7618.5613 without restraints) Performing minimization step: 2838. Total energy = 7619.8446 kcal/mol (7616.0631 without restraints) Performing minimization step: 2839. Total energy = 7617.3472 kcal/mol (7613.5659 without restraints) Performing minimization step: 2840. Total energy = 7614.8511 kcal/mol (7611.0701 without restraints) Performing minimization step: 2841. Total energy = 7612.3563 kcal/mol (7608.5756 without restraints) Performing minimization step: 2842. Total energy = 7609.8625 kcal/mol (7606.0823 without restraints) Performing minimization step: 2843. Total energy = 7607.3705 kcal/mol (7603.5904 without restraints) Performing minimization step: 2844. Total energy = 7604.8787 kcal/mol (7601.0990 without restraints) Performing minimization step: 2845. Total energy = 7602.3887 kcal/mol (7598.6093 without restraints) Performing minimization step: 2846. Total energy = 7599.8996 kcal/mol (7596.1205 without restraints) Performing minimization step: 2847. Total energy = 7597.4115 kcal/mol (7593.6327 without restraints) Performing minimization step: 2848. Total energy = 7594.9249 kcal/mol (7591.1464 without restraints) Performing minimization step: 2849. Total energy = 7592.4391 kcal/mol (7588.6608 without restraints) Performing minimization step: 2850. Total energy = 7589.9546 kcal/mol (7586.1767 without restraints) Performing minimization step: 2851. Total energy = 7587.4718 kcal/mol (7583.6942 without restraints) Performing minimization step: 2852. Total energy = 7584.9896 kcal/mol (7581.2123 without restraints) Performing minimization step: 2853. Total energy = 7582.5085 kcal/mol (7578.7314 without restraints) Performing minimization step: 2854. Total energy = 7580.0287 kcal/mol (7576.2519 without restraints) Performing minimization step: 2855. Total energy = 7577.5504 kcal/mol (7573.7740 without restraints) Performing minimization step: 2856. Total energy = 7575.0732 kcal/mol (7571.2970 without restraints) Performing minimization step: 2857. Total energy = 7572.5967 kcal/mol (7568.8208 without restraints) Performing minimization step: 2858. Total energy = 7570.1214 kcal/mol (7566.3459 without restraints) Performing minimization step: 2859. Total energy = 7567.6472 kcal/mol (7563.8720 without restraints) Performing minimization step: 2860. Total energy = 7565.1746 kcal/mol (7561.3996 without restraints) Performing minimization step: 2861. Total energy = 7562.7028 kcal/mol (7558.9281 without restraints) Performing minimization step: 2862. Total energy = 7560.2321 kcal/mol (7556.4577 without restraints) Performing minimization step: 2863. Total energy = 7557.7623 kcal/mol (7553.9883 without restraints) Performing minimization step: 2864. Total energy = 7555.2940 kcal/mol (7551.5202 without restraints) Performing minimization step: 2865. Total energy = 7552.8269 kcal/mol (7549.0534 without restraints) Performing minimization step: 2866. Total energy = 7550.3611 kcal/mol (7546.5879 without restraints) Performing minimization step: 2867. Total energy = 7547.8965 kcal/mol (7544.1236 without restraints) Performing minimization step: 2868. Total energy = 7545.4329 kcal/mol (7541.6603 without restraints) Performing minimization step: 2869. Total energy = 7542.9706 kcal/mol (7539.1983 without restraints) Performing minimization step: 2870. Total energy = 7540.5095 kcal/mol (7536.7375 without restraints) Performing minimization step: 2871. Total energy = 7538.0497 kcal/mol (7534.2781 without restraints) Performing minimization step: 2872. Total energy = 7535.5909 kcal/mol (7531.8195 without restraints) Performing minimization step: 2873. Total energy = 7533.1333 kcal/mol (7529.3624 without restraints) Performing minimization step: 2874. Total energy = 7530.6768 kcal/mol (7526.9060 without restraints) Performing minimization step: 2875. Total energy = 7528.2210 kcal/mol (7524.4505 without restraints) Performing minimization step: 2876. Total energy = 7525.7670 kcal/mol (7521.9968 without restraints) Performing minimization step: 2877. Total energy = 7523.3140 kcal/mol (7519.5441 without restraints) Performing minimization step: 2878. Total energy = 7520.8622 kcal/mol (7517.0926 without restraints) Performing minimization step: 2879. Total energy = 7518.4116 kcal/mol (7514.6423 without restraints) Performing minimization step: 2880. Total energy = 7515.9618 kcal/mol (7512.1928 without restraints) Performing minimization step: 2881. Total energy = 7513.5138 kcal/mol (7509.7451 without restraints) Performing minimization step: 2882. Total energy = 7511.0668 kcal/mol (7507.2983 without restraints) Performing minimization step: 2883. Total energy = 7508.6210 kcal/mol (7504.8529 without restraints) Performing minimization step: 2884. Total energy = 7506.1764 kcal/mol (7502.4086 without restraints) Performing minimization step: 2885. Total energy = 7503.7330 kcal/mol (7499.9654 without restraints) Performing minimization step: 2886. Total energy = 7501.2911 kcal/mol (7497.5239 without restraints) Performing minimization step: 2887. Total energy = 7498.8498 kcal/mol (7495.0829 without restraints) Performing minimization step: 2888. Total energy = 7496.4102 kcal/mol (7492.6435 without restraints) Performing minimization step: 2889. Total energy = 7493.9720 kcal/mol (7490.2058 without restraints) Performing minimization step: 2890. Total energy = 7491.5347 kcal/mol (7487.7686 without restraints) Performing minimization step: 2891. Total energy = 7489.0986 kcal/mol (7485.3328 without restraints) Performing minimization step: 2892. Total energy = 7486.6641 kcal/mol (7482.8989 without restraints) Performing minimization step: 2893. Total energy = 7484.2304 kcal/mol (7480.4653 without restraints) Performing minimization step: 2894. Total energy = 7481.7985 kcal/mol (7478.0336 without restraints) Performing minimization step: 2895. Total energy = 7479.3670 kcal/mol (7475.6023 without restraints) Performing minimization step: 2896. Total energy = 7476.9367 kcal/mol (7473.1724 without restraints) Performing minimization step: 2897. Total energy = 7474.5082 kcal/mol (7470.7442 without restraints) Performing minimization step: 2898. Total energy = 7472.0805 kcal/mol (7468.3168 without restraints) Performing minimization step: 2899. Total energy = 7469.6536 kcal/mol (7465.8902 without restraints) Performing minimization step: 2900. Total energy = 7467.2284 kcal/mol (7463.4652 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 7464.8043 kcal/mol (7461.0415 without restraints) Performing minimization step: 2902. Total energy = 7462.3811 kcal/mol (7458.6185 without restraints) Performing minimization step: 2903. Total energy = 7459.9591 kcal/mol (7456.1969 without restraints) Performing minimization step: 2904. Total energy = 7457.5387 kcal/mol (7453.7767 without restraints) Performing minimization step: 2905. Total energy = 7455.1195 kcal/mol (7451.3578 without restraints) Performing minimization step: 2906. Total energy = 7452.7016 kcal/mol (7448.9402 without restraints) Performing minimization step: 2907. Total energy = 7450.2846 kcal/mol (7446.5236 without restraints) Performing minimization step: 2908. Total energy = 7447.8690 kcal/mol (7444.1083 without restraints) Performing minimization step: 2909. Total energy = 7445.4545 kcal/mol (7441.6939 without restraints) Performing minimization step: 2910. Total energy = 7443.0411 kcal/mol (7439.2809 without restraints) Performing minimization step: 2911. Total energy = 7440.6291 kcal/mol (7436.8694 without restraints) Performing minimization step: 2912. Total energy = 7438.2184 kcal/mol (7434.4589 without restraints) Performing minimization step: 2913. Total energy = 7435.8089 kcal/mol (7432.0497 without restraints) Performing minimization step: 2914. Total energy = 7433.4003 kcal/mol (7429.6413 without restraints) Performing minimization step: 2915. Total energy = 7430.9931 kcal/mol (7427.2345 without restraints) Performing minimization step: 2916. Total energy = 7428.5872 kcal/mol (7424.8288 without restraints) Performing minimization step: 2917. Total energy = 7426.1829 kcal/mol (7422.4249 without restraints) Performing minimization step: 2918. Total energy = 7423.7798 kcal/mol (7420.0221 without restraints) Performing minimization step: 2919. Total energy = 7421.3781 kcal/mol (7417.6208 without restraints) Performing minimization step: 2920. Total energy = 7418.9772 kcal/mol (7415.2200 without restraints) Performing minimization step: 2921. Total energy = 7416.5776 kcal/mol (7412.8207 without restraints) Performing minimization step: 2922. Total energy = 7414.1795 kcal/mol (7410.4230 without restraints) Performing minimization step: 2923. Total energy = 7411.7822 kcal/mol (7408.0259 without restraints) Performing minimization step: 2924. Total energy = 7409.3863 kcal/mol (7405.6303 without restraints) Performing minimization step: 2925. Total energy = 7406.9915 kcal/mol (7403.2358 without restraints) Performing minimization step: 2926. Total energy = 7404.5978 kcal/mol (7400.8424 without restraints) Performing minimization step: 2927. Total energy = 7402.2057 kcal/mol (7398.4508 without restraints) Performing minimization step: 2928. Total energy = 7399.8150 kcal/mol (7396.0602 without restraints) Performing minimization step: 2929. Total energy = 7397.4251 kcal/mol (7393.6706 without restraints) Performing minimization step: 2930. Total energy = 7395.0365 kcal/mol (7391.2822 without restraints) Performing minimization step: 2931. Total energy = 7392.6493 kcal/mol (7388.8953 without restraints) Performing minimization step: 2932. Total energy = 7390.2636 kcal/mol (7386.5100 without restraints) Performing minimization step: 2933. Total energy = 7387.8791 kcal/mol (7384.1259 without restraints) Performing minimization step: 2934. Total energy = 7385.4959 kcal/mol (7381.7432 without restraints) Performing minimization step: 2935. Total energy = 7383.1140 kcal/mol (7379.3613 without restraints) Performing minimization step: 2936. Total energy = 7380.7329 kcal/mol (7376.9804 without restraints) Performing minimization step: 2937. Total energy = 7378.3529 kcal/mol (7374.6008 without restraints) Performing minimization step: 2938. Total energy = 7375.9742 kcal/mol (7372.2223 without restraints) Performing minimization step: 2939. Total energy = 7373.5969 kcal/mol (7369.8454 without restraints) Performing minimization step: 2940. Total energy = 7371.2211 kcal/mol (7367.4698 without restraints) Performing minimization step: 2941. Total energy = 7368.8459 kcal/mol (7365.0950 without restraints) Performing minimization step: 2942. Total energy = 7366.4723 kcal/mol (7362.7217 without restraints) Performing minimization step: 2943. Total energy = 7364.1001 kcal/mol (7360.3497 without restraints) Performing minimization step: 2944. Total energy = 7361.7290 kcal/mol (7357.9789 without restraints) Performing minimization step: 2945. Total energy = 7359.3594 kcal/mol (7355.6097 without restraints) Performing minimization step: 2946. Total energy = 7356.9912 kcal/mol (7353.2417 without restraints) Performing minimization step: 2947. Total energy = 7354.6238 kcal/mol (7350.8746 without restraints) Performing minimization step: 2948. Total energy = 7352.2577 kcal/mol (7348.5088 without restraints) Performing minimization step: 2949. Total energy = 7349.8928 kcal/mol (7346.1442 without restraints) Performing minimization step: 2950. Total energy = 7347.5292 kcal/mol (7343.7809 without restraints) Performing minimization step: 2951. Total energy = 7345.1674 kcal/mol (7341.4194 without restraints) Performing minimization step: 2952. Total energy = 7342.8066 kcal/mol (7339.0589 without restraints) Performing minimization step: 2953. Total energy = 7340.4468 kcal/mol (7336.6994 without restraints) Performing minimization step: 2954. Total energy = 7338.0880 kcal/mol (7334.3409 without restraints) Performing minimization step: 2955. Total energy = 7335.7308 kcal/mol (7331.9839 without restraints) Performing minimization step: 2956. Total energy = 7333.3748 kcal/mol (7329.6282 without restraints) Performing minimization step: 2957. Total energy = 7331.0200 kcal/mol (7327.2738 without restraints) Performing minimization step: 2958. Total energy = 7328.6666 kcal/mol (7324.9206 without restraints) Performing minimization step: 2959. Total energy = 7326.3146 kcal/mol (7322.5689 without restraints) Performing minimization step: 2960. Total energy = 7323.9634 kcal/mol (7320.2180 without restraints) Performing minimization step: 2961. Total energy = 7321.6141 kcal/mol (7317.8690 without restraints) Performing minimization step: 2962. Total energy = 7319.2658 kcal/mol (7315.5210 without restraints) Performing minimization step: 2963. Total energy = 7316.9189 kcal/mol (7313.1744 without restraints) Performing minimization step: 2964. Total energy = 7314.5732 kcal/mol (7310.8290 without restraints) Performing minimization step: 2965. Total energy = 7312.2287 kcal/mol (7308.4848 without restraints) Performing minimization step: 2966. Total energy = 7309.8856 kcal/mol (7306.1420 without restraints) Performing minimization step: 2967. Total energy = 7307.5434 kcal/mol (7303.8002 without restraints) Performing minimization step: 2968. Total energy = 7305.2027 kcal/mol (7301.4597 without restraints) Performing minimization step: 2969. Total energy = 7302.8631 kcal/mol (7299.1204 without restraints) Performing minimization step: 2970. Total energy = 7300.5249 kcal/mol (7296.7825 without restraints) Performing minimization step: 2971. Total energy = 7298.1881 kcal/mol (7294.4461 without restraints) Performing minimization step: 2972. Total energy = 7295.8527 kcal/mol (7292.1109 without restraints) Performing minimization step: 2973. Total energy = 7293.5185 kcal/mol (7289.7770 without restraints) Performing minimization step: 2974. Total energy = 7291.1855 kcal/mol (7287.4443 without restraints) Performing minimization step: 2975. Total energy = 7288.8540 kcal/mol (7285.1130 without restraints) Performing minimization step: 2976. Total energy = 7286.5236 kcal/mol (7282.7830 without restraints) Performing minimization step: 2977. Total energy = 7284.1944 kcal/mol (7280.4540 without restraints) Performing minimization step: 2978. Total energy = 7281.8670 kcal/mol (7278.1269 without restraints) Performing minimization step: 2979. Total energy = 7279.5407 kcal/mol (7275.8011 without restraints) Performing minimization step: 2980. Total energy = 7277.2154 kcal/mol (7273.4759 without restraints) Performing minimization step: 2981. Total energy = 7274.8922 kcal/mol (7271.1532 without restraints) Performing minimization step: 2982. Total energy = 7272.5698 kcal/mol (7268.8309 without restraints) Performing minimization step: 2983. Total energy = 7270.2486 kcal/mol (7266.5100 without restraints) Performing minimization step: 2984. Total energy = 7267.9294 kcal/mol (7264.1912 without restraints) Performing minimization step: 2985. Total energy = 7265.6110 kcal/mol (7261.8730 without restraints) Performing minimization step: 2986. Total energy = 7263.2937 kcal/mol (7259.5560 without restraints) Performing minimization step: 2987. Total energy = 7260.9777 kcal/mol (7257.2403 without restraints) Performing minimization step: 2988. Total energy = 7258.6630 kcal/mol (7254.9260 without restraints) Performing minimization step: 2989. Total energy = 7256.3497 kcal/mol (7252.6129 without restraints) Performing minimization step: 2990. Total energy = 7254.0376 kcal/mol (7250.3011 without restraints) Performing minimization step: 2991. Total energy = 7251.7263 kcal/mol (7247.9901 without restraints) Performing minimization step: 2992. Total energy = 7249.4169 kcal/mol (7245.6810 without restraints) Performing minimization step: 2993. Total energy = 7247.1088 kcal/mol (7243.3733 without restraints) Performing minimization step: 2994. Total energy = 7244.8021 kcal/mol (7241.0668 without restraints) Performing minimization step: 2995. Total energy = 7242.4968 kcal/mol (7238.7618 without restraints) Performing minimization step: 2996. Total energy = 7240.1927 kcal/mol (7236.4579 without restraints) Performing minimization step: 2997. Total energy = 7237.8899 kcal/mol (7234.1555 without restraints) Performing minimization step: 2998. Total energy = 7235.5886 kcal/mol (7231.8545 without restraints) Performing minimization step: 2999. Total energy = 7233.2883 kcal/mol (7229.5545 without restraints) Performing minimization step: 3000. Total energy = 7230.9895 kcal/mol (7227.2561 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 7228.6920 kcal/mol (7224.9587 without restraints) Performing minimization step: 3002. Total energy = 7226.3961 kcal/mol (7222.6633 without restraints) Performing minimization step: 3003. Total energy = 7224.1012 kcal/mol (7220.3685 without restraints) Performing minimization step: 3004. Total energy = 7221.8074 kcal/mol (7218.0751 without restraints) Performing minimization step: 3005. Total energy = 7219.5157 kcal/mol (7215.7836 without restraints) Performing minimization step: 3006. Total energy = 7217.2250 kcal/mol (7213.4933 without restraints) Performing minimization step: 3007. Total energy = 7214.9359 kcal/mol (7211.2045 without restraints) Performing minimization step: 3008. Total energy = 7212.6477 kcal/mol (7208.9164 without restraints) Performing minimization step: 3009. Total energy = 7210.3611 kcal/mol (7206.6303 without restraints) Performing minimization step: 3010. Total energy = 7208.0757 kcal/mol (7204.3451 without restraints) Performing minimization step: 3011. Total energy = 7205.7920 kcal/mol (7202.0618 without restraints) Performing minimization step: 3012. Total energy = 7203.5092 kcal/mol (7199.7792 without restraints) Performing minimization step: 3013. Total energy = 7201.2276 kcal/mol (7197.4980 without restraints) Performing minimization step: 3014. Total energy = 7198.9475 kcal/mol (7195.2181 without restraints) Performing minimization step: 3015. Total energy = 7196.6690 kcal/mol (7192.9399 without restraints) Performing minimization step: 3016. Total energy = 7194.3916 kcal/mol (7190.6628 without restraints) Performing minimization step: 3017. Total energy = 7192.1162 kcal/mol (7188.3878 without restraints) Performing minimization step: 3018. Total energy = 7189.8418 kcal/mol (7186.1136 without restraints) Performing minimization step: 3019. Total energy = 7187.5683 kcal/mol (7183.8403 without restraints) Performing minimization step: 3020. Total energy = 7185.2964 kcal/mol (7181.5688 without restraints) Performing minimization step: 3021. Total energy = 7183.0256 kcal/mol (7179.2983 without restraints) Performing minimization step: 3022. Total energy = 7180.7563 kcal/mol (7177.0293 without restraints) Performing minimization step: 3023. Total energy = 7178.4887 kcal/mol (7174.7619 without restraints) Performing minimization step: 3024. Total energy = 7176.2220 kcal/mol (7172.4956 without restraints) Performing minimization step: 3025. Total energy = 7173.9570 kcal/mol (7170.2309 without restraints) Performing minimization step: 3026. Total energy = 7171.6934 kcal/mol (7167.9677 without restraints) Performing minimization step: 3027. Total energy = 7169.4311 kcal/mol (7165.7056 without restraints) Performing minimization step: 3028. Total energy = 7167.1705 kcal/mol (7163.4454 without restraints) Performing minimization step: 3029. Total energy = 7164.9108 kcal/mol (7161.1858 without restraints) Performing minimization step: 3030. Total energy = 7162.6523 kcal/mol (7158.9277 without restraints) Performing minimization step: 3031. Total energy = 7160.3951 kcal/mol (7156.6708 without restraints) Performing minimization step: 3032. Total energy = 7158.1399 kcal/mol (7154.4159 without restraints) Performing minimization step: 3033. Total energy = 7155.8863 kcal/mol (7152.1625 without restraints) Performing minimization step: 3034. Total energy = 7153.6332 kcal/mol (7149.9098 without restraints) Performing minimization step: 3035. Total energy = 7151.3818 kcal/mol (7147.6589 without restraints) Performing minimization step: 3036. Total energy = 7149.1320 kcal/mol (7145.4092 without restraints) Performing minimization step: 3037. Total energy = 7146.8833 kcal/mol (7143.1608 without restraints) Performing minimization step: 3038. Total energy = 7144.6360 kcal/mol (7140.9138 without restraints) Performing minimization step: 3039. Total energy = 7142.3903 kcal/mol (7138.6684 without restraints) Performing minimization step: 3040. Total energy = 7140.1458 kcal/mol (7136.4242 without restraints) Performing minimization step: 3041. Total energy = 7137.9031 kcal/mol (7134.1817 without restraints) Performing minimization step: 3042. Total energy = 7135.6615 kcal/mol (7131.9405 without restraints) Performing minimization step: 3043. Total energy = 7133.4215 kcal/mol (7129.7008 without restraints) Performing minimization step: 3044. Total energy = 7131.1826 kcal/mol (7127.4622 without restraints) Performing minimization step: 3045. Total energy = 7128.9451 kcal/mol (7125.2249 without restraints) Performing minimization step: 3046. Total energy = 7126.7091 kcal/mol (7122.9892 without restraints) Performing minimization step: 3047. Total energy = 7124.4744 kcal/mol (7120.7549 without restraints) Performing minimization step: 3048. Total energy = 7122.2411 kcal/mol (7118.5218 without restraints) Performing minimization step: 3049. Total energy = 7120.0091 kcal/mol (7116.2902 without restraints) Performing minimization step: 3050. Total energy = 7117.7785 kcal/mol (7114.0599 without restraints) Performing minimization step: 3051. Total energy = 7115.5497 kcal/mol (7111.8313 without restraints) Performing minimization step: 3052. Total energy = 7113.3216 kcal/mol (7109.6036 without restraints) Performing minimization step: 3053. Total energy = 7111.0956 kcal/mol (7107.3779 without restraints) Performing minimization step: 3054. Total energy = 7108.8707 kcal/mol (7105.1533 without restraints) Performing minimization step: 3055. Total energy = 7106.6472 kcal/mol (7102.9301 without restraints) Performing minimization step: 3056. Total energy = 7104.4250 kcal/mol (7100.7081 without restraints) Performing minimization step: 3057. Total energy = 7102.2038 kcal/mol (7098.4873 without restraints) Performing minimization step: 3058. Total energy = 7099.9846 kcal/mol (7096.2685 without restraints) Performing minimization step: 3059. Total energy = 7097.7669 kcal/mol (7094.0510 without restraints) Performing minimization step: 3060. Total energy = 7095.5510 kcal/mol (7091.8353 without restraints) Performing minimization step: 3061. Total energy = 7093.3361 kcal/mol (7089.6207 without restraints) Performing minimization step: 3062. Total energy = 7091.1225 kcal/mol (7087.4075 without restraints) Performing minimization step: 3063. Total energy = 7088.9105 kcal/mol (7085.1958 without restraints) Performing minimization step: 3064. Total energy = 7086.6999 kcal/mol (7082.9855 without restraints) Performing minimization step: 3065. Total energy = 7084.4910 kcal/mol (7080.7768 without restraints) Performing minimization step: 3066. Total energy = 7082.2831 kcal/mol (7078.5693 without restraints) Performing minimization step: 3067. Total energy = 7080.0769 kcal/mol (7076.3634 without restraints) Performing minimization step: 3068. Total energy = 7077.8719 kcal/mol (7074.1586 without restraints) Performing minimization step: 3069. Total energy = 7075.6685 kcal/mol (7071.9556 without restraints) Performing minimization step: 3070. Total energy = 7073.4666 kcal/mol (7069.7539 without restraints) Performing minimization step: 3071. Total energy = 7071.2661 kcal/mol (7067.5539 without restraints) Performing minimization step: 3072. Total energy = 7069.0671 kcal/mol (7065.3551 without restraints) Performing minimization step: 3073. Total energy = 7066.8692 kcal/mol (7063.1573 without restraints) Performing minimization step: 3074. Total energy = 7064.6727 kcal/mol (7060.9613 without restraints) Performing minimization step: 3075. Total energy = 7062.4775 kcal/mol (7058.7662 without restraints) Performing minimization step: 3076. Total energy = 7060.2841 kcal/mol (7056.5732 without restraints) Performing minimization step: 3077. Total energy = 7058.0919 kcal/mol (7054.3814 without restraints) Performing minimization step: 3078. Total energy = 7055.9018 kcal/mol (7052.1916 without restraints) Performing minimization step: 3079. Total energy = 7053.7135 kcal/mol (7050.0037 without restraints) Performing minimization step: 3080. Total energy = 7051.5261 kcal/mol (7047.8165 without restraints) Performing minimization step: 3081. Total energy = 7049.3396 kcal/mol (7045.6301 without restraints) Performing minimization step: 3082. Total energy = 7047.1547 kcal/mol (7043.4456 without restraints) Performing minimization step: 3083. Total energy = 7044.9714 kcal/mol (7041.2627 without restraints) Performing minimization step: 3084. Total energy = 7042.7897 kcal/mol (7039.0813 without restraints) Performing minimization step: 3085. Total energy = 7040.6094 kcal/mol (7036.9013 without restraints) Performing minimization step: 3086. Total energy = 7038.4304 kcal/mol (7034.7226 without restraints) Performing minimization step: 3087. Total energy = 7036.2530 kcal/mol (7032.5455 without restraints) Performing minimization step: 3088. Total energy = 7034.0770 kcal/mol (7030.3698 without restraints) Performing minimization step: 3089. Total energy = 7031.9025 kcal/mol (7028.1956 without restraints) Performing minimization step: 3090. Total energy = 7029.7296 kcal/mol (7026.0230 without restraints) Performing minimization step: 3091. Total energy = 7027.5580 kcal/mol (7023.8517 without restraints) Performing minimization step: 3092. Total energy = 7025.3879 kcal/mol (7021.6820 without restraints) Performing minimization step: 3093. Total energy = 7023.2199 kcal/mol (7019.5142 without restraints) Performing minimization step: 3094. Total energy = 7021.0527 kcal/mol (7017.3474 without restraints) Performing minimization step: 3095. Total energy = 7018.8871 kcal/mol (7015.1820 without restraints) Performing minimization step: 3096. Total energy = 7016.7229 kcal/mol (7013.0182 without restraints) Performing minimization step: 3097. Total energy = 7014.5605 kcal/mol (7010.8560 without restraints) Performing minimization step: 3098. Total energy = 7012.3995 kcal/mol (7008.6954 without restraints) Performing minimization step: 3099. Total energy = 7010.2398 kcal/mol (7006.5360 without restraints) Performing minimization step: 3100. Total energy = 7008.0814 kcal/mol (7004.3779 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 7005.9247 kcal/mol (7002.2213 without restraints) Performing minimization step: 3102. Total energy = 7003.7694 kcal/mol (7000.0664 without restraints) Performing minimization step: 3103. Total energy = 7001.6159 kcal/mol (6997.9132 without restraints) Performing minimization step: 3104. Total energy = 6999.4636 kcal/mol (6995.7613 without restraints) Performing minimization step: 3105. Total energy = 6997.3134 kcal/mol (6993.6115 without restraints) Performing minimization step: 3106. Total energy = 6995.1644 kcal/mol (6991.4627 without restraints) Performing minimization step: 3107. Total energy = 6993.0167 kcal/mol (6989.3153 without restraints) Performing minimization step: 3108. Total energy = 6990.8706 kcal/mol (6987.1695 without restraints) Performing minimization step: 3109. Total energy = 6988.7257 kcal/mol (6985.0249 without restraints) Performing minimization step: 3110. Total energy = 6986.5827 kcal/mol (6982.8822 without restraints) Performing minimization step: 3111. Total energy = 6984.4413 kcal/mol (6980.7412 without restraints) Performing minimization step: 3112. Total energy = 6982.3012 kcal/mol (6978.6013 without restraints) Performing minimization step: 3113. Total energy = 6980.1630 kcal/mol (6976.4636 without restraints) Performing minimization step: 3114. Total energy = 6978.0258 kcal/mol (6974.3265 without restraints) Performing minimization step: 3115. Total energy = 6975.8901 kcal/mol (6972.1912 without restraints) Performing minimization step: 3116. Total energy = 6973.7561 kcal/mol (6970.0574 without restraints) Performing minimization step: 3117. Total energy = 6971.6237 kcal/mol (6967.9253 without restraints) Performing minimization step: 3118. Total energy = 6969.4924 kcal/mol (6965.7943 without restraints) Performing minimization step: 3119. Total energy = 6967.3628 kcal/mol (6963.6650 without restraints) Performing minimization step: 3120. Total energy = 6965.2353 kcal/mol (6961.5378 without restraints) Performing minimization step: 3121. Total energy = 6963.1090 kcal/mol (6959.4119 without restraints) Performing minimization step: 3122. Total energy = 6960.9840 kcal/mol (6957.2872 without restraints) Performing minimization step: 3123. Total energy = 6958.8606 kcal/mol (6955.1640 without restraints) Performing minimization step: 3124. Total energy = 6956.7387 kcal/mol (6953.0425 without restraints) Performing minimization step: 3125. Total energy = 6954.6181 kcal/mol (6950.9222 without restraints) Performing minimization step: 3126. Total energy = 6952.4991 kcal/mol (6948.8035 without restraints) Performing minimization step: 3127. Total energy = 6950.3819 kcal/mol (6946.6865 without restraints) Performing minimization step: 3128. Total energy = 6948.2661 kcal/mol (6944.5711 without restraints) Performing minimization step: 3129. Total energy = 6946.1523 kcal/mol (6942.4576 without restraints) Performing minimization step: 3130. Total energy = 6944.0398 kcal/mol (6940.3454 without restraints) Performing minimization step: 3131. Total energy = 6941.9287 kcal/mol (6938.2346 without restraints) Performing minimization step: 3132. Total energy = 6939.8194 kcal/mol (6936.1256 without restraints) Performing minimization step: 3133. Total energy = 6937.7114 kcal/mol (6934.0179 without restraints) Performing minimization step: 3134. Total energy = 6935.6048 kcal/mol (6931.9117 without restraints) Performing minimization step: 3135. Total energy = 6933.4997 kcal/mol (6929.8067 without restraints) Performing minimization step: 3136. Total energy = 6931.3960 kcal/mol (6927.7034 without restraints) Performing minimization step: 3137. Total energy = 6929.2942 kcal/mol (6925.6019 without restraints) Performing minimization step: 3138. Total energy = 6927.1941 kcal/mol (6923.5022 without restraints) Performing minimization step: 3139. Total energy = 6925.0954 kcal/mol (6921.4038 without restraints) Performing minimization step: 3140. Total energy = 6922.9980 kcal/mol (6919.3067 without restraints) Performing minimization step: 3141. Total energy = 6920.9026 kcal/mol (6917.2115 without restraints) Performing minimization step: 3142. Total energy = 6918.8085 kcal/mol (6915.1178 without restraints) Performing minimization step: 3143. Total energy = 6916.7168 kcal/mol (6913.0264 without restraints) Performing minimization step: 3144. Total energy = 6914.6259 kcal/mol (6910.9357 without restraints) Performing minimization step: 3145. Total energy = 6912.5366 kcal/mol (6908.8468 without restraints) Performing minimization step: 3146. Total energy = 6910.4488 kcal/mol (6906.7592 without restraints) Performing minimization step: 3147. Total energy = 6908.3628 kcal/mol (6904.6736 without restraints) Performing minimization step: 3148. Total energy = 6906.2782 kcal/mol (6902.5894 without restraints) Performing minimization step: 3149. Total energy = 6904.1953 kcal/mol (6900.5067 without restraints) Performing minimization step: 3150. Total energy = 6902.1141 kcal/mol (6898.4259 without restraints) Performing minimization step: 3151. Total energy = 6900.0343 kcal/mol (6896.3464 without restraints) Performing minimization step: 3152. Total energy = 6897.9562 kcal/mol (6894.2686 without restraints) Performing minimization step: 3153. Total energy = 6895.8796 kcal/mol (6892.1923 without restraints) Performing minimization step: 3154. Total energy = 6893.8047 kcal/mol (6890.1178 without restraints) Performing minimization step: 3155. Total energy = 6891.7314 kcal/mol (6888.0447 without restraints) Performing minimization step: 3156. Total energy = 6889.6593 kcal/mol (6885.9729 without restraints) Performing minimization step: 3157. Total energy = 6887.5900 kcal/mol (6883.9039 without restraints) Performing minimization step: 3158. Total energy = 6885.5213 kcal/mol (6881.8356 without restraints) Performing minimization step: 3159. Total energy = 6883.4541 kcal/mol (6879.7687 without restraints) Performing minimization step: 3160. Total energy = 6881.3883 kcal/mol (6877.7032 without restraints) Performing minimization step: 3161. Total energy = 6879.3244 kcal/mol (6875.6394 without restraints) Performing minimization step: 3162. Total energy = 6877.2620 kcal/mol (6873.5774 without restraints) Performing minimization step: 3163. Total energy = 6875.2013 kcal/mol (6871.5170 without restraints) Performing minimization step: 3164. Total energy = 6873.1430 kcal/mol (6869.4592 without restraints) Performing minimization step: 3165. Total energy = 6871.0856 kcal/mol (6867.4021 without restraints) Performing minimization step: 3166. Total energy = 6869.0299 kcal/mol (6865.3467 without restraints) Performing minimization step: 3167. Total energy = 6866.9756 kcal/mol (6863.2925 without restraints) Performing minimization step: 3168. Total energy = 6864.9232 kcal/mol (6861.2405 without restraints) Performing minimization step: 3169. Total energy = 6862.8721 kcal/mol (6859.1898 without restraints) Performing minimization step: 3170. Total energy = 6860.8230 kcal/mol (6857.1410 without restraints) Performing minimization step: 3171. Total energy = 6858.7752 kcal/mol (6855.0935 without restraints) Performing minimization step: 3172. Total energy = 6856.7291 kcal/mol (6853.0477 without restraints) Performing minimization step: 3173. Total energy = 6854.6846 kcal/mol (6851.0034 without restraints) Performing minimization step: 3174. Total energy = 6852.6426 kcal/mol (6848.9617 without restraints) Performing minimization step: 3175. Total energy = 6850.6020 kcal/mol (6846.9216 without restraints) Performing minimization step: 3176. Total energy = 6848.5624 kcal/mol (6844.8823 without restraints) Performing minimization step: 3177. Total energy = 6846.5244 kcal/mol (6842.8445 without restraints) Performing minimization step: 3178. Total energy = 6844.4877 kcal/mol (6840.8081 without restraints) Performing minimization step: 3179. Total energy = 6842.4528 kcal/mol (6838.7735 without restraints) Performing minimization step: 3180. Total energy = 6840.4197 kcal/mol (6836.7408 without restraints) Performing minimization step: 3181. Total energy = 6838.3881 kcal/mol (6834.7095 without restraints) Performing minimization step: 3182. Total energy = 6836.3582 kcal/mol (6832.6797 without restraints) Performing minimization step: 3183. Total energy = 6834.3298 kcal/mol (6830.6518 without restraints) Performing minimization step: 3184. Total energy = 6832.3034 kcal/mol (6828.6257 without restraints) Performing minimization step: 3185. Total energy = 6830.2786 kcal/mol (6826.6013 without restraints) Performing minimization step: 3186. Total energy = 6828.2556 kcal/mol (6824.5786 without restraints) Performing minimization step: 3187. Total energy = 6826.2341 kcal/mol (6822.5574 without restraints) Performing minimization step: 3188. Total energy = 6824.2138 kcal/mol (6820.5372 without restraints) Performing minimization step: 3189. Total energy = 6822.1952 kcal/mol (6818.5190 without restraints) Performing minimization step: 3190. Total energy = 6820.1786 kcal/mol (6816.5027 without restraints) Performing minimization step: 3191. Total energy = 6818.1636 kcal/mol (6814.4880 without restraints) Performing minimization step: 3192. Total energy = 6816.1504 kcal/mol (6812.4751 without restraints) Performing minimization step: 3193. Total energy = 6814.1384 kcal/mol (6810.4635 without restraints) Performing minimization step: 3194. Total energy = 6812.1282 kcal/mol (6808.4536 without restraints) Performing minimization step: 3195. Total energy = 6810.1198 kcal/mol (6806.4456 without restraints) Performing minimization step: 3196. Total energy = 6808.1129 kcal/mol (6804.4389 without restraints) Performing minimization step: 3197. Total energy = 6806.1078 kcal/mol (6802.4341 without restraints) Performing minimization step: 3198. Total energy = 6804.1043 kcal/mol (6800.4310 without restraints) Performing minimization step: 3199. Total energy = 6802.1022 kcal/mol (6798.4293 without restraints) Performing minimization step: 3200. Total energy = 6800.1019 kcal/mol (6796.4291 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 6798.1033 kcal/mol (6794.4309 without restraints) Performing minimization step: 3202. Total energy = 6796.1067 kcal/mol (6792.4346 without restraints) Performing minimization step: 3203. Total energy = 6794.1113 kcal/mol (6790.4396 without restraints) Performing minimization step: 3204. Total energy = 6792.1181 kcal/mol (6788.4469 without restraints) Performing minimization step: 3205. Total energy = 6790.1270 kcal/mol (6786.4561 without restraints) Performing minimization step: 3206. Total energy = 6788.1369 kcal/mol (6784.4661 without restraints) Performing minimization step: 3207. Total energy = 6786.1484 kcal/mol (6782.4778 without restraints) Performing minimization step: 3208. Total energy = 6784.1609 kcal/mol (6780.4906 without restraints) Performing minimization step: 3209. Total energy = 6782.1758 kcal/mol (6778.5058 without restraints) Performing minimization step: 3210. Total energy = 6780.1921 kcal/mol (6776.5227 without restraints) Performing minimization step: 3211. Total energy = 6778.2108 kcal/mol (6774.5415 without restraints) Performing minimization step: 3212. Total energy = 6776.2305 kcal/mol (6772.5616 without restraints) Performing minimization step: 3213. Total energy = 6774.2518 kcal/mol (6770.5832 without restraints) Performing minimization step: 3214. Total energy = 6772.2749 kcal/mol (6768.6066 without restraints) Performing minimization step: 3215. Total energy = 6770.2999 kcal/mol (6766.6319 without restraints) Performing minimization step: 3216. Total energy = 6768.3265 kcal/mol (6764.6588 without restraints) Performing minimization step: 3217. Total energy = 6766.3546 kcal/mol (6762.6872 without restraints) Performing minimization step: 3218. Total energy = 6764.3849 kcal/mol (6760.7179 without restraints) Performing minimization step: 3219. Total energy = 6762.4164 kcal/mol (6758.7497 without restraints) Performing minimization step: 3220. Total energy = 6760.4496 kcal/mol (6756.7831 without restraints) Performing minimization step: 3221. Total energy = 6758.4844 kcal/mol (6754.8183 without restraints) Performing minimization step: 3222. Total energy = 6756.5210 kcal/mol (6752.8553 without restraints) Performing minimization step: 3223. Total energy = 6754.5593 kcal/mol (6750.8938 without restraints) Performing minimization step: 3224. Total energy = 6752.5987 kcal/mol (6748.9335 without restraints) Performing minimization step: 3225. Total energy = 6750.6401 kcal/mol (6746.9753 without restraints) Performing minimization step: 3226. Total energy = 6748.6834 kcal/mol (6745.0189 without restraints) Performing minimization step: 3227. Total energy = 6746.7285 kcal/mol (6743.0643 without restraints) Performing minimization step: 3228. Total energy = 6744.7754 kcal/mol (6741.1116 without restraints) Performing minimization step: 3229. Total energy = 6742.8240 kcal/mol (6739.1604 without restraints) Performing minimization step: 3230. Total energy = 6740.8742 kcal/mol (6737.2109 without restraints) Performing minimization step: 3231. Total energy = 6738.9260 kcal/mol (6735.2630 without restraints) Performing minimization step: 3232. Total energy = 6736.9796 kcal/mol (6733.3169 without restraints) Performing minimization step: 3233. Total energy = 6735.0347 kcal/mol (6731.3724 without restraints) Performing minimization step: 3234. Total energy = 6733.0914 kcal/mol (6729.4293 without restraints) Performing minimization step: 3235. Total energy = 6731.1499 kcal/mol (6727.4880 without restraints) Performing minimization step: 3236. Total energy = 6729.2100 kcal/mol (6725.5486 without restraints) Performing minimization step: 3237. Total energy = 6727.2720 kcal/mol (6723.6108 without restraints) Performing minimization step: 3238. Total energy = 6725.3357 kcal/mol (6721.6750 without restraints) Performing minimization step: 3239. Total energy = 6723.4009 kcal/mol (6719.7404 without restraints) Performing minimization step: 3240. Total energy = 6721.4680 kcal/mol (6717.8078 without restraints) Performing minimization step: 3241. Total energy = 6719.5367 kcal/mol (6715.8769 without restraints) Performing minimization step: 3242. Total energy = 6717.6074 kcal/mol (6713.9479 without restraints) Performing minimization step: 3243. Total energy = 6715.6800 kcal/mol (6712.0208 without restraints) Performing minimization step: 3244. Total energy = 6713.7536 kcal/mol (6710.0945 without restraints) Performing minimization step: 3245. Total energy = 6711.8290 kcal/mol (6708.1704 without restraints) Performing minimization step: 3246. Total energy = 6709.9069 kcal/mol (6706.2487 without restraints) Performing minimization step: 3247. Total energy = 6707.9861 kcal/mol (6704.3283 without restraints) Performing minimization step: 3248. Total energy = 6706.0670 kcal/mol (6702.4093 without restraints) Performing minimization step: 3249. Total energy = 6704.1497 kcal/mol (6700.4925 without restraints) Performing minimization step: 3250. Total energy = 6702.2340 kcal/mol (6698.5769 without restraints) Performing minimization step: 3251. Total energy = 6700.3200 kcal/mol (6696.6633 without restraints) Performing minimization step: 3252. Total energy = 6698.4076 kcal/mol (6694.7512 without restraints) Performing minimization step: 3253. Total energy = 6696.4969 kcal/mol (6692.8408 without restraints) Performing minimization step: 3254. Total energy = 6694.5882 kcal/mol (6690.9325 without restraints) Performing minimization step: 3255. Total energy = 6692.6809 kcal/mol (6689.0253 without restraints) Performing minimization step: 3256. Total energy = 6690.7752 kcal/mol (6687.1201 without restraints) Performing minimization step: 3257. Total energy = 6688.8718 kcal/mol (6685.2172 without restraints) Performing minimization step: 3258. Total energy = 6686.9699 kcal/mol (6683.3153 without restraints) Performing minimization step: 3259. Total energy = 6685.0694 kcal/mol (6681.4151 without restraints) Performing minimization step: 3260. Total energy = 6683.1706 kcal/mol (6679.5167 without restraints) Performing minimization step: 3261. Total energy = 6681.2735 kcal/mol (6677.6199 without restraints) Performing minimization step: 3262. Total energy = 6679.3783 kcal/mol (6675.7251 without restraints) Performing minimization step: 3263. Total energy = 6677.4849 kcal/mol (6673.8320 without restraints) Performing minimization step: 3264. Total energy = 6675.5933 kcal/mol (6671.9406 without restraints) Performing minimization step: 3265. Total energy = 6673.7033 kcal/mol (6670.0511 without restraints) Performing minimization step: 3266. Total energy = 6671.8150 kcal/mol (6668.1630 without restraints) Performing minimization step: 3267. Total energy = 6669.9283 kcal/mol (6666.2766 without restraints) Performing minimization step: 3268. Total energy = 6668.0434 kcal/mol (6664.3920 without restraints) Performing minimization step: 3269. Total energy = 6666.1603 kcal/mol (6662.5091 without restraints) Performing minimization step: 3270. Total energy = 6664.2789 kcal/mol (6660.6282 without restraints) Performing minimization step: 3271. Total energy = 6662.3992 kcal/mol (6658.7488 without restraints) Performing minimization step: 3272. Total energy = 6660.5217 kcal/mol (6656.8717 without restraints) Performing minimization step: 3273. Total energy = 6658.6457 kcal/mol (6654.9959 without restraints) Performing minimization step: 3274. Total energy = 6656.7711 kcal/mol (6653.1218 without restraints) Performing minimization step: 3275. Total energy = 6654.8986 kcal/mol (6651.2496 without restraints) Performing minimization step: 3276. Total energy = 6653.0281 kcal/mol (6649.3792 without restraints) Performing minimization step: 3277. Total energy = 6651.1586 kcal/mol (6647.5100 without restraints) Performing minimization step: 3278. Total energy = 6649.2915 kcal/mol (6645.6432 without restraints) Performing minimization step: 3279. Total energy = 6647.4257 kcal/mol (6643.7779 without restraints) Performing minimization step: 3280. Total energy = 6645.5620 kcal/mol (6641.9144 without restraints) Performing minimization step: 3281. Total energy = 6643.6996 kcal/mol (6640.0523 without restraints) Performing minimization step: 3282. Total energy = 6641.8394 kcal/mol (6638.1924 without restraints) Performing minimization step: 3283. Total energy = 6639.9805 kcal/mol (6636.3338 without restraints) Performing minimization step: 3284. Total energy = 6638.1235 kcal/mol (6634.4772 without restraints) Performing minimization step: 3285. Total energy = 6636.2681 kcal/mol (6632.6220 without restraints) Performing minimization step: 3286. Total energy = 6634.4146 kcal/mol (6630.7688 without restraints) Performing minimization step: 3287. Total energy = 6632.5626 kcal/mol (6628.9172 without restraints) Performing minimization step: 3288. Total energy = 6630.7128 kcal/mol (6627.0679 without restraints) Performing minimization step: 3289. Total energy = 6628.8644 kcal/mol (6625.2195 without restraints) Performing minimization step: 3290. Total energy = 6627.0178 kcal/mol (6623.3734 without restraints) Performing minimization step: 3291. Total energy = 6625.1727 kcal/mol (6621.5285 without restraints) Performing minimization step: 3292. Total energy = 6623.3293 kcal/mol (6619.6853 without restraints) Performing minimization step: 3293. Total energy = 6621.4881 kcal/mol (6617.8445 without restraints) Performing minimization step: 3294. Total energy = 6619.6483 kcal/mol (6616.0052 without restraints) Performing minimization step: 3295. Total energy = 6617.8104 kcal/mol (6614.1674 without restraints) Performing minimization step: 3296. Total energy = 6615.9742 kcal/mol (6612.3316 without restraints) Performing minimization step: 3297. Total energy = 6614.1397 kcal/mol (6610.4975 without restraints) Performing minimization step: 3298. Total energy = 6612.3071 kcal/mol (6608.6651 without restraints) Performing minimization step: 3299. Total energy = 6610.4762 kcal/mol (6606.8345 without restraints) Performing minimization step: 3300. Total energy = 6608.6473 kcal/mol (6605.0060 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 6606.8200 kcal/mol (6603.1790 without restraints) Performing minimization step: 3302. Total energy = 6604.9943 kcal/mol (6601.3535 without restraints) Performing minimization step: 3303. Total energy = 6603.1702 kcal/mol (6599.5297 without restraints) Performing minimization step: 3304. Total energy = 6601.3477 kcal/mol (6597.7078 without restraints) Performing minimization step: 3305. Total energy = 6599.5275 kcal/mol (6595.8878 without restraints) Performing minimization step: 3306. Total energy = 6597.7086 kcal/mol (6594.0691 without restraints) Performing minimization step: 3307. Total energy = 6595.8914 kcal/mol (6592.2522 without restraints) Performing minimization step: 3308. Total energy = 6594.0760 kcal/mol (6590.4371 without restraints) Performing minimization step: 3309. Total energy = 6592.2623 kcal/mol (6588.6236 without restraints) Performing minimization step: 3310. Total energy = 6590.4502 kcal/mol (6586.8119 without restraints) Performing minimization step: 3311. Total energy = 6588.6399 kcal/mol (6585.0020 without restraints) Performing minimization step: 3312. Total energy = 6586.8315 kcal/mol (6583.1938 without restraints) Performing minimization step: 3313. Total energy = 6585.0248 kcal/mol (6581.3875 without restraints) Performing minimization step: 3314. Total energy = 6583.2198 kcal/mol (6579.5828 without restraints) Performing minimization step: 3315. Total energy = 6581.4169 kcal/mol (6577.7802 without restraints) Performing minimization step: 3316. Total energy = 6579.6151 kcal/mol (6575.9787 without restraints) Performing minimization step: 3317. Total energy = 6577.8153 kcal/mol (6574.1792 without restraints) Performing minimization step: 3318. Total energy = 6576.0174 kcal/mol (6572.3817 without restraints) Performing minimization step: 3319. Total energy = 6574.2212 kcal/mol (6570.5857 without restraints) Performing minimization step: 3320. Total energy = 6572.4273 kcal/mol (6568.7921 without restraints) Performing minimization step: 3321. Total energy = 6570.6347 kcal/mol (6566.9998 without restraints) Performing minimization step: 3322. Total energy = 6568.8444 kcal/mol (6565.2098 without restraints) Performing minimization step: 3323. Total energy = 6567.0550 kcal/mol (6563.4209 without restraints) Performing minimization step: 3324. Total energy = 6565.2675 kcal/mol (6561.6336 without restraints) Performing minimization step: 3325. Total energy = 6563.4818 kcal/mol (6559.8481 without restraints) Performing minimization step: 3326. Total energy = 6561.6980 kcal/mol (6558.0647 without restraints) Performing minimization step: 3327. Total energy = 6559.9161 kcal/mol (6556.2831 without restraints) Performing minimization step: 3328. Total energy = 6558.1356 kcal/mol (6554.5029 without restraints) Performing minimization step: 3329. Total energy = 6556.3567 kcal/mol (6552.7243 without restraints) Performing minimization step: 3330. Total energy = 6554.5796 kcal/mol (6550.9475 without restraints) Performing minimization step: 3331. Total energy = 6552.8041 kcal/mol (6549.1723 without restraints) Performing minimization step: 3332. Total energy = 6551.0304 kcal/mol (6547.3989 without restraints) Performing minimization step: 3333. Total energy = 6549.2591 kcal/mol (6545.6279 without restraints) Performing minimization step: 3334. Total energy = 6547.4888 kcal/mol (6543.8580 without restraints) Performing minimization step: 3335. Total energy = 6545.7203 kcal/mol (6542.0897 without restraints) Performing minimization step: 3336. Total energy = 6543.9542 kcal/mol (6540.3239 without restraints) Performing minimization step: 3337. Total energy = 6542.1891 kcal/mol (6538.5592 without restraints) Performing minimization step: 3338. Total energy = 6540.4258 kcal/mol (6536.7962 without restraints) Performing minimization step: 3339. Total energy = 6538.6646 kcal/mol (6535.0353 without restraints) Performing minimization step: 3340. Total energy = 6536.9051 kcal/mol (6533.2761 without restraints) Performing minimization step: 3341. Total energy = 6535.1471 kcal/mol (6531.5183 without restraints) Performing minimization step: 3342. Total energy = 6533.3907 kcal/mol (6529.7623 without restraints) Performing minimization step: 3343. Total energy = 6531.6363 kcal/mol (6528.0082 without restraints) Performing minimization step: 3344. Total energy = 6529.8834 kcal/mol (6526.2556 without restraints) Performing minimization step: 3345. Total energy = 6528.1323 kcal/mol (6524.5049 without restraints) Performing minimization step: 3346. Total energy = 6526.3831 kcal/mol (6522.7560 without restraints) Performing minimization step: 3347. Total energy = 6524.6353 kcal/mol (6521.0085 without restraints) Performing minimization step: 3348. Total energy = 6522.8893 kcal/mol (6519.2628 without restraints) Performing minimization step: 3349. Total energy = 6521.1452 kcal/mol (6517.5190 without restraints) Performing minimization step: 3350. Total energy = 6519.4031 kcal/mol (6515.7771 without restraints) Performing minimization step: 3351. Total energy = 6517.6622 kcal/mol (6514.0366 without restraints) Performing minimization step: 3352. Total energy = 6515.9228 kcal/mol (6512.2975 without restraints) Performing minimization step: 3353. Total energy = 6514.1855 kcal/mol (6510.5605 without restraints) Performing minimization step: 3354. Total energy = 6512.4502 kcal/mol (6508.8254 without restraints) Performing minimization step: 3355. Total energy = 6510.7161 kcal/mol (6507.0917 without restraints) Performing minimization step: 3356. Total energy = 6508.9840 kcal/mol (6505.3599 without restraints) Performing minimization step: 3357. Total energy = 6507.2536 kcal/mol (6503.6298 without restraints) Performing minimization step: 3358. Total energy = 6505.5249 kcal/mol (6501.9014 without restraints) Performing minimization step: 3359. Total energy = 6503.7982 kcal/mol (6500.1750 without restraints) Performing minimization step: 3360. Total energy = 6502.0731 kcal/mol (6498.4503 without restraints) Performing minimization step: 3361. Total energy = 6500.3497 kcal/mol (6496.7271 without restraints) Performing minimization step: 3362. Total energy = 6498.6280 kcal/mol (6495.0057 without restraints) Performing minimization step: 3363. Total energy = 6496.9084 kcal/mol (6493.2864 without restraints) Performing minimization step: 3364. Total energy = 6495.1901 kcal/mol (6491.5684 without restraints) Performing minimization step: 3365. Total energy = 6493.4737 kcal/mol (6489.8524 without restraints) Performing minimization step: 3366. Total energy = 6491.7589 kcal/mol (6488.1378 without restraints) Performing minimization step: 3367. Total energy = 6490.0460 kcal/mol (6486.4252 without restraints) Performing minimization step: 3368. Total energy = 6488.3345 kcal/mol (6484.7140 without restraints) Performing minimization step: 3369. Total energy = 6486.6251 kcal/mol (6483.0049 without restraints) Performing minimization step: 3370. Total energy = 6484.9167 kcal/mol (6481.2968 without restraints) Performing minimization step: 3371. Total energy = 6483.2104 kcal/mol (6479.5909 without restraints) Performing minimization step: 3372. Total energy = 6481.5059 kcal/mol (6477.8867 without restraints) Performing minimization step: 3373. Total energy = 6479.8034 kcal/mol (6476.1844 without restraints) Performing minimization step: 3374. Total energy = 6478.1023 kcal/mol (6474.4836 without restraints) Performing minimization step: 3375. Total energy = 6476.4029 kcal/mol (6472.7845 without restraints) Performing minimization step: 3376. Total energy = 6474.7054 kcal/mol (6471.0874 without restraints) Performing minimization step: 3377. Total energy = 6473.0096 kcal/mol (6469.3918 without restraints) Performing minimization step: 3378. Total energy = 6471.3153 kcal/mol (6467.6979 without restraints) Performing minimization step: 3379. Total energy = 6469.6228 kcal/mol (6466.0057 without restraints) Performing minimization step: 3380. Total energy = 6467.9322 kcal/mol (6464.3153 without restraints) Performing minimization step: 3381. Total energy = 6466.2431 kcal/mol (6462.6265 without restraints) Performing minimization step: 3382. Total energy = 6464.5557 kcal/mol (6460.9394 without restraints) Performing minimization step: 3383. Total energy = 6462.8700 kcal/mol (6459.2540 without restraints) Performing minimization step: 3384. Total energy = 6461.1862 kcal/mol (6457.5705 without restraints) Performing minimization step: 3385. Total energy = 6459.5040 kcal/mol (6455.8886 without restraints) Performing minimization step: 3386. Total energy = 6457.8234 kcal/mol (6454.2084 without restraints) Performing minimization step: 3387. Total energy = 6456.1447 kcal/mol (6452.5299 without restraints) Performing minimization step: 3388. Total energy = 6454.4682 kcal/mol (6450.8537 without restraints) Performing minimization step: 3389. Total energy = 6452.7927 kcal/mol (6449.1784 without restraints) Performing minimization step: 3390. Total energy = 6451.1191 kcal/mol (6447.5052 without restraints) Performing minimization step: 3391. Total energy = 6449.4473 kcal/mol (6445.8337 without restraints) Performing minimization step: 3392. Total energy = 6447.7774 kcal/mol (6444.1641 without restraints) Performing minimization step: 3393. Total energy = 6446.1088 kcal/mol (6442.4958 without restraints) Performing minimization step: 3394. Total energy = 6444.4419 kcal/mol (6440.8292 without restraints) Performing minimization step: 3395. Total energy = 6442.7770 kcal/mol (6439.1645 without restraints) Performing minimization step: 3396. Total energy = 6441.1136 kcal/mol (6437.5016 without restraints) Performing minimization step: 3397. Total energy = 6439.4519 kcal/mol (6435.8401 without restraints) Performing minimization step: 3398. Total energy = 6437.7918 kcal/mol (6434.1803 without restraints) Performing minimization step: 3399. Total energy = 6436.1335 kcal/mol (6432.5223 without restraints) Performing minimization step: 3400. Total energy = 6434.4770 kcal/mol (6430.8661 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 6432.8221 kcal/mol (6429.2114 without restraints) Performing minimization step: 3402. Total energy = 6431.1687 kcal/mol (6427.5583 without restraints) Performing minimization step: 3403. Total energy = 6429.5170 kcal/mol (6425.9070 without restraints) Performing minimization step: 3404. Total energy = 6427.8667 kcal/mol (6424.2566 without restraints) Performing minimization step: 3405. Total energy = 6426.2181 kcal/mol (6422.6086 without restraints) Performing minimization step: 3406. Total energy = 6424.5713 kcal/mol (6420.9622 without restraints) Performing minimization step: 3407. Total energy = 6422.9267 kcal/mol (6419.3178 without restraints) Performing minimization step: 3408. Total energy = 6421.2837 kcal/mol (6417.6754 without restraints) Performing minimization step: 3409. Total energy = 6419.6425 kcal/mol (6416.0342 without restraints) Performing minimization step: 3410. Total energy = 6418.0028 kcal/mol (6414.3948 without restraints) Performing minimization step: 3411. Total energy = 6416.3650 kcal/mol (6412.7574 without restraints) Performing minimization step: 3412. Total energy = 6414.7284 kcal/mol (6411.1212 without restraints) Performing minimization step: 3413. Total energy = 6413.0938 kcal/mol (6409.4867 without restraints) Performing minimization step: 3414. Total energy = 6411.4609 kcal/mol (6407.8541 without restraints) Performing minimization step: 3415. Total energy = 6409.8295 kcal/mol (6406.2229 without restraints) Performing minimization step: 3416. Total energy = 6408.1997 kcal/mol (6404.5934 without restraints) Performing minimization step: 3417. Total energy = 6406.5718 kcal/mol (6402.9658 without restraints) Performing minimization step: 3418. Total energy = 6404.9454 kcal/mol (6401.3397 without restraints) Performing minimization step: 3419. Total energy = 6403.3207 kcal/mol (6399.7153 without restraints) Performing minimization step: 3420. Total energy = 6401.6980 kcal/mol (6398.0930 without restraints) Performing minimization step: 3421. Total energy = 6400.0768 kcal/mol (6396.4721 without restraints) Performing minimization step: 3422. Total energy = 6398.4575 kcal/mol (6394.8530 without restraints) Performing minimization step: 3423. Total energy = 6396.8396 kcal/mol (6393.2357 without restraints) Performing minimization step: 3424. Total energy = 6395.2235 kcal/mol (6391.6196 without restraints) Performing minimization step: 3425. Total energy = 6393.6088 kcal/mol (6390.0052 without restraints) Performing minimization step: 3426. Total energy = 6391.9958 kcal/mol (6388.3924 without restraints) Performing minimization step: 3427. Total energy = 6390.3845 kcal/mol (6386.7815 without restraints) Performing minimization step: 3428. Total energy = 6388.7748 kcal/mol (6385.1720 without restraints) Performing minimization step: 3429. Total energy = 6387.1667 kcal/mol (6383.5643 without restraints) Performing minimization step: 3430. Total energy = 6385.5610 kcal/mol (6381.9588 without restraints) Performing minimization step: 3431. Total energy = 6383.9562 kcal/mol (6380.3544 without restraints) Performing minimization step: 3432. Total energy = 6382.3539 kcal/mol (6378.7523 without restraints) Performing minimization step: 3433. Total energy = 6380.7526 kcal/mol (6377.1514 without restraints) Performing minimization step: 3434. Total energy = 6379.1528 kcal/mol (6375.5516 without restraints) Performing minimization step: 3435. Total energy = 6377.5544 kcal/mol (6373.9536 without restraints) Performing minimization step: 3436. Total energy = 6375.9584 kcal/mol (6372.3580 without restraints) Performing minimization step: 3437. Total energy = 6374.3639 kcal/mol (6370.7637 without restraints) Performing minimization step: 3438. Total energy = 6372.7706 kcal/mol (6369.1709 without restraints) Performing minimization step: 3439. Total energy = 6371.1792 kcal/mol (6367.5796 without restraints) Performing minimization step: 3440. Total energy = 6369.5892 kcal/mol (6365.9898 without restraints) Performing minimization step: 3441. Total energy = 6368.0011 kcal/mol (6364.4019 without restraints) Performing minimization step: 3442. Total energy = 6366.4149 kcal/mol (6362.8161 without restraints) Performing minimization step: 3443. Total energy = 6364.8302 kcal/mol (6361.2318 without restraints) Performing minimization step: 3444. Total energy = 6363.2468 kcal/mol (6359.6487 without restraints) Performing minimization step: 3445. Total energy = 6361.6651 kcal/mol (6358.0671 without restraints) Performing minimization step: 3446. Total energy = 6360.0850 kcal/mol (6356.4874 without restraints) Performing minimization step: 3447. Total energy = 6358.5068 kcal/mol (6354.9093 without restraints) Performing minimization step: 3448. Total energy = 6356.9299 kcal/mol (6353.3329 without restraints) Performing minimization step: 3449. Total energy = 6355.3548 kcal/mol (6351.7580 without restraints) Performing minimization step: 3450. Total energy = 6353.7818 kcal/mol (6350.1853 without restraints) Performing minimization step: 3451. Total energy = 6352.2105 kcal/mol (6348.6144 without restraints) Performing minimization step: 3452. Total energy = 6350.6406 kcal/mol (6347.0446 without restraints) Performing minimization step: 3453. Total energy = 6349.0722 kcal/mol (6345.4765 without restraints) Performing minimization step: 3454. Total energy = 6347.5047 kcal/mol (6343.9092 without restraints) Performing minimization step: 3455. Total energy = 6345.9394 kcal/mol (6342.3443 without restraints) Performing minimization step: 3456. Total energy = 6344.3755 kcal/mol (6340.7807 without restraints) Performing minimization step: 3457. Total energy = 6342.8134 kcal/mol (6339.2189 without restraints) Performing minimization step: 3458. Total energy = 6341.2530 kcal/mol (6337.6587 without restraints) Performing minimization step: 3459. Total energy = 6339.6945 kcal/mol (6336.1008 without restraints) Performing minimization step: 3460. Total energy = 6338.1378 kcal/mol (6334.5442 without restraints) Performing minimization step: 3461. Total energy = 6336.5826 kcal/mol (6332.9892 without restraints) Performing minimization step: 3462. Total energy = 6335.0288 kcal/mol (6331.4356 without restraints) Performing minimization step: 3463. Total energy = 6333.4767 kcal/mol (6329.8839 without restraints) Performing minimization step: 3464. Total energy = 6331.9260 kcal/mol (6328.3334 without restraints) Performing minimization step: 3465. Total energy = 6330.3773 kcal/mol (6326.7849 without restraints) Performing minimization step: 3466. Total energy = 6328.8297 kcal/mol (6325.2377 without restraints) Performing minimization step: 3467. Total energy = 6327.2839 kcal/mol (6323.6922 without restraints) Performing minimization step: 3468. Total energy = 6325.7402 kcal/mol (6322.1487 without restraints) Performing minimization step: 3469. Total energy = 6324.1972 kcal/mol (6320.6060 without restraints) Performing minimization step: 3470. Total energy = 6322.6563 kcal/mol (6319.0653 without restraints) Performing minimization step: 3471. Total energy = 6321.1166 kcal/mol (6317.5259 without restraints) Performing minimization step: 3472. Total energy = 6319.5788 kcal/mol (6315.9884 without restraints) Performing minimization step: 3473. Total energy = 6318.0425 kcal/mol (6314.4523 without restraints) Performing minimization step: 3474. Total energy = 6316.5077 kcal/mol (6312.9179 without restraints) Performing minimization step: 3475. Total energy = 6314.9748 kcal/mol (6311.3852 without restraints) Performing minimization step: 3476. Total energy = 6313.4432 kcal/mol (6309.8539 without restraints) Performing minimization step: 3477. Total energy = 6311.9134 kcal/mol (6308.3244 without restraints) Performing minimization step: 3478. Total energy = 6310.3852 kcal/mol (6306.7966 without restraints) Performing minimization step: 3479. Total energy = 6308.8586 kcal/mol (6305.2701 without restraints) Performing minimization step: 3480. Total energy = 6307.3335 kcal/mol (6303.7454 without restraints) Performing minimization step: 3481. Total energy = 6305.8107 kcal/mol (6302.2227 without restraints) Performing minimization step: 3482. Total energy = 6304.2886 kcal/mol (6300.7009 without restraints) Performing minimization step: 3483. Total energy = 6302.7681 kcal/mol (6299.1807 without restraints) Performing minimization step: 3484. Total energy = 6301.2493 kcal/mol (6297.6623 without restraints) Performing minimization step: 3485. Total energy = 6299.7320 kcal/mol (6296.1451 without restraints) Performing minimization step: 3486. Total energy = 6298.2163 kcal/mol (6294.6297 without restraints) Performing minimization step: 3487. Total energy = 6296.7024 kcal/mol (6293.1165 without restraints) Performing minimization step: 3488. Total energy = 6295.1901 kcal/mol (6291.6039 without restraints) Performing minimization step: 3489. Total energy = 6293.6793 kcal/mol (6290.0937 without restraints) Performing minimization step: 3490. Total energy = 6292.1704 kcal/mol (6288.5850 without restraints) Performing minimization step: 3491. Total energy = 6290.6626 kcal/mol (6287.0773 without restraints) Performing minimization step: 3492. Total energy = 6289.1562 kcal/mol (6285.5712 without restraints) Performing minimization step: 3493. Total energy = 6287.6513 kcal/mol (6284.0666 without restraints) Performing minimization step: 3494. Total energy = 6286.1490 kcal/mol (6282.5645 without restraints) Performing minimization step: 3495. Total energy = 6284.6473 kcal/mol (6281.0631 without restraints) Performing minimization step: 3496. Total energy = 6283.1476 kcal/mol (6279.5640 without restraints) Performing minimization step: 3497. Total energy = 6281.6497 kcal/mol (6278.0661 without restraints) Performing minimization step: 3498. Total energy = 6280.1530 kcal/mol (6276.5696 without restraints) Performing minimization step: 3499. Total energy = 6278.6575 kcal/mol (6275.0744 without restraints) Performing minimization step: 3500. Total energy = 6277.1640 kcal/mol (6273.5811 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 6275.6716 kcal/mol (6272.0890 without restraints) Performing minimization step: 3502. Total energy = 6274.1812 kcal/mol (6270.5988 without restraints) Performing minimization step: 3503. Total energy = 6272.6923 kcal/mol (6269.1104 without restraints) Performing minimization step: 3504. Total energy = 6271.2047 kcal/mol (6267.6229 without restraints) Performing minimization step: 3505. Total energy = 6269.7188 kcal/mol (6266.1373 without restraints) Performing minimization step: 3506. Total energy = 6268.2342 kcal/mol (6264.6529 without restraints) Performing minimization step: 3507. Total energy = 6266.7513 kcal/mol (6263.1702 without restraints) Performing minimization step: 3508. Total energy = 6265.2699 kcal/mol (6261.6892 without restraints) Performing minimization step: 3509. Total energy = 6263.7903 kcal/mol (6260.2099 without restraints) Performing minimization step: 3510. Total energy = 6262.3119 kcal/mol (6258.7317 without restraints) Performing minimization step: 3511. Total energy = 6260.8351 kcal/mol (6257.2552 without restraints) Performing minimization step: 3512. Total energy = 6259.3596 kcal/mol (6255.7798 without restraints) Performing minimization step: 3513. Total energy = 6257.8859 kcal/mol (6254.3064 without restraints) Performing minimization step: 3514. Total energy = 6256.4137 kcal/mol (6252.8345 without restraints) Performing minimization step: 3515. Total energy = 6254.9428 kcal/mol (6251.3639 without restraints) Performing minimization step: 3516. Total energy = 6253.4734 kcal/mol (6249.8948 without restraints) Performing minimization step: 3517. Total energy = 6252.0059 kcal/mol (6248.4275 without restraints) Performing minimization step: 3518. Total energy = 6250.5404 kcal/mol (6246.9623 without restraints) Performing minimization step: 3519. Total energy = 6249.0754 kcal/mol (6245.4975 without restraints) Performing minimization step: 3520. Total energy = 6247.6123 kcal/mol (6244.0347 without restraints) Performing minimization step: 3521. Total energy = 6246.1512 kcal/mol (6242.5739 without restraints) Performing minimization step: 3522. Total energy = 6244.6908 kcal/mol (6241.1137 without restraints) Performing minimization step: 3523. Total energy = 6243.2321 kcal/mol (6239.6552 without restraints) Performing minimization step: 3524. Total energy = 6241.7748 kcal/mol (6238.1983 without restraints) Performing minimization step: 3525. Total energy = 6240.3191 kcal/mol (6236.7428 without restraints) Performing minimization step: 3526. Total energy = 6238.8651 kcal/mol (6235.2890 without restraints) Performing minimization step: 3527. Total energy = 6237.4123 kcal/mol (6233.8365 without restraints) Performing minimization step: 3528. Total energy = 6235.9611 kcal/mol (6232.3855 without restraints) Performing minimization step: 3529. Total energy = 6234.5113 kcal/mol (6230.9360 without restraints) Performing minimization step: 3530. Total energy = 6233.0631 kcal/mol (6229.4880 without restraints) Performing minimization step: 3531. Total energy = 6231.6163 kcal/mol (6228.0415 without restraints) Performing minimization step: 3532. Total energy = 6230.1713 kcal/mol (6226.5967 without restraints) Performing minimization step: 3533. Total energy = 6228.7277 kcal/mol (6225.1534 without restraints) Performing minimization step: 3534. Total energy = 6227.2855 kcal/mol (6223.7114 without restraints) Performing minimization step: 3535. Total energy = 6225.8448 kcal/mol (6222.2710 without restraints) Performing minimization step: 3536. Total energy = 6224.4058 kcal/mol (6220.8323 without restraints) Performing minimization step: 3537. Total energy = 6222.9684 kcal/mol (6219.3950 without restraints) Performing minimization step: 3538. Total energy = 6221.5320 kcal/mol (6217.9589 without restraints) Performing minimization step: 3539. Total energy = 6220.0971 kcal/mol (6216.5243 without restraints) Performing minimization step: 3540. Total energy = 6218.6637 kcal/mol (6215.0911 without restraints) Performing minimization step: 3541. Total energy = 6217.2317 kcal/mol (6213.6594 without restraints) Performing minimization step: 3542. Total energy = 6215.8011 kcal/mol (6212.2289 without restraints) Performing minimization step: 3543. Total energy = 6214.3718 kcal/mol (6210.8000 without restraints) Performing minimization step: 3544. Total energy = 6212.9442 kcal/mol (6209.3727 without restraints) Performing minimization step: 3545. Total energy = 6211.5179 kcal/mol (6207.9466 without restraints) Performing minimization step: 3546. Total energy = 6210.0933 kcal/mol (6206.5223 without restraints) Performing minimization step: 3547. Total energy = 6208.6702 kcal/mol (6205.0994 without restraints) Performing minimization step: 3548. Total energy = 6207.2488 kcal/mol (6203.6782 without restraints) Performing minimization step: 3549. Total energy = 6205.8284 kcal/mol (6202.2580 without restraints) Performing minimization step: 3550. Total energy = 6204.4100 kcal/mol (6200.8399 without restraints) Performing minimization step: 3551. Total energy = 6202.9925 kcal/mol (6199.4227 without restraints) Performing minimization step: 3552. Total energy = 6201.5768 kcal/mol (6198.0072 without restraints) Performing minimization step: 3553. Total energy = 6200.1622 kcal/mol (6196.5928 without restraints) Performing minimization step: 3554. Total energy = 6198.7492 kcal/mol (6195.1801 without restraints) Performing minimization step: 3555. Total energy = 6197.3382 kcal/mol (6193.7693 without restraints) Performing minimization step: 3556. Total energy = 6195.9281 kcal/mol (6192.3595 without restraints) Performing minimization step: 3557. Total energy = 6194.5196 kcal/mol (6190.9514 without restraints) Performing minimization step: 3558. Total energy = 6193.1129 kcal/mol (6189.5448 without restraints) Performing minimization step: 3559. Total energy = 6191.7077 kcal/mol (6188.1399 without restraints) Performing minimization step: 3560. Total energy = 6190.3040 kcal/mol (6186.7365 without restraints) Performing minimization step: 3561. Total energy = 6188.9014 kcal/mol (6185.3340 without restraints) Performing minimization step: 3562. Total energy = 6187.4999 kcal/mol (6183.9328 without restraints) Performing minimization step: 3563. Total energy = 6186.1000 kcal/mol (6182.5330 without restraints) Performing minimization step: 3564. Total energy = 6184.7015 kcal/mol (6181.1349 without restraints) Performing minimization step: 3565. Total energy = 6183.3043 kcal/mol (6179.7379 without restraints) Performing minimization step: 3566. Total energy = 6181.9086 kcal/mol (6178.3424 without restraints) Performing minimization step: 3567. Total energy = 6180.5149 kcal/mol (6176.9490 without restraints) Performing minimization step: 3568. Total energy = 6179.1221 kcal/mol (6175.5564 without restraints) Performing minimization step: 3569. Total energy = 6177.7308 kcal/mol (6174.1654 without restraints) Performing minimization step: 3570. Total energy = 6176.3410 kcal/mol (6172.7757 without restraints) Performing minimization step: 3571. Total energy = 6174.9526 kcal/mol (6171.3876 without restraints) Performing minimization step: 3572. Total energy = 6173.5658 kcal/mol (6170.0010 without restraints) Performing minimization step: 3573. Total energy = 6172.1800 kcal/mol (6168.6154 without restraints) Performing minimization step: 3574. Total energy = 6170.7955 kcal/mol (6167.2312 without restraints) Performing minimization step: 3575. Total energy = 6169.4130 kcal/mol (6165.8489 without restraints) Performing minimization step: 3576. Total energy = 6168.0314 kcal/mol (6164.4675 without restraints) Performing minimization step: 3577. Total energy = 6166.6513 kcal/mol (6163.0877 without restraints) Performing minimization step: 3578. Total energy = 6165.2723 kcal/mol (6161.7090 without restraints) Performing minimization step: 3579. Total energy = 6163.8951 kcal/mol (6160.3320 without restraints) Performing minimization step: 3580. Total energy = 6162.5192 kcal/mol (6158.9563 without restraints) Performing minimization step: 3581. Total energy = 6161.1447 kcal/mol (6157.5820 without restraints) Performing minimization step: 3582. Total energy = 6159.7714 kcal/mol (6156.2090 without restraints) Performing minimization step: 3583. Total energy = 6158.3997 kcal/mol (6154.8375 without restraints) Performing minimization step: 3584. Total energy = 6157.0294 kcal/mol (6153.4674 without restraints) Performing minimization step: 3585. Total energy = 6155.6608 kcal/mol (6152.0990 without restraints) Performing minimization step: 3586. Total energy = 6154.2933 kcal/mol (6150.7318 without restraints) Performing minimization step: 3587. Total energy = 6152.9270 kcal/mol (6149.3656 without restraints) Performing minimization step: 3588. Total energy = 6151.5620 kcal/mol (6148.0010 without restraints) Performing minimization step: 3589. Total energy = 6150.1985 kcal/mol (6146.6377 without restraints) Performing minimization step: 3590. Total energy = 6148.8366 kcal/mol (6145.2761 without restraints) Performing minimization step: 3591. Total energy = 6147.4759 kcal/mol (6143.9156 without restraints) Performing minimization step: 3592. Total energy = 6146.1169 kcal/mol (6142.5570 without restraints) Performing minimization step: 3593. Total energy = 6144.7593 kcal/mol (6141.1994 without restraints) Performing minimization step: 3594. Total energy = 6143.4024 kcal/mol (6139.8427 without restraints) Performing minimization step: 3595. Total energy = 6142.0471 kcal/mol (6138.4877 without restraints) Performing minimization step: 3596. Total energy = 6140.6938 kcal/mol (6137.1346 without restraints) Performing minimization step: 3597. Total energy = 6139.3415 kcal/mol (6135.7827 without restraints) Performing minimization step: 3598. Total energy = 6137.9903 kcal/mol (6134.4315 without restraints) Performing minimization step: 3599. Total energy = 6136.6404 kcal/mol (6133.0819 without restraints) Performing minimization step: 3600. Total energy = 6135.2918 kcal/mol (6131.7335 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 6133.9447 kcal/mol (6130.3867 without restraints) Performing minimization step: 3602. Total energy = 6132.5995 kcal/mol (6129.0416 without restraints) Performing minimization step: 3603. Total energy = 6131.2551 kcal/mol (6127.6975 without restraints) Performing minimization step: 3604. Total energy = 6129.9120 kcal/mol (6126.3546 without restraints) Performing minimization step: 3605. Total energy = 6128.5709 kcal/mol (6125.0138 without restraints) Performing minimization step: 3606. Total energy = 6127.2305 kcal/mol (6123.6736 without restraints) Performing minimization step: 3607. Total energy = 6125.8915 kcal/mol (6122.3348 without restraints) Performing minimization step: 3608. Total energy = 6124.5542 kcal/mol (6120.9977 without restraints) Performing minimization step: 3609. Total energy = 6123.2182 kcal/mol (6119.6622 without restraints) Performing minimization step: 3610. Total energy = 6121.8835 kcal/mol (6118.3275 without restraints) Performing minimization step: 3611. Total energy = 6120.5498 kcal/mol (6116.9940 without restraints) Performing minimization step: 3612. Total energy = 6119.2179 kcal/mol (6115.6624 without restraints) Performing minimization step: 3613. Total energy = 6117.8871 kcal/mol (6114.3318 without restraints) Performing minimization step: 3614. Total energy = 6116.5576 kcal/mol (6113.0024 without restraints) Performing minimization step: 3615. Total energy = 6115.2292 kcal/mol (6111.6743 without restraints) Performing minimization step: 3616. Total energy = 6113.9022 kcal/mol (6110.3475 without restraints) Performing minimization step: 3617. Total energy = 6112.5768 kcal/mol (6109.0223 without restraints) Performing minimization step: 3618. Total energy = 6111.2528 kcal/mol (6107.6985 without restraints) Performing minimization step: 3619. Total energy = 6109.9297 kcal/mol (6106.3753 without restraints) Performing minimization step: 3620. Total energy = 6108.6077 kcal/mol (6105.0538 without restraints) Performing minimization step: 3621. Total energy = 6107.2874 kcal/mol (6103.7338 without restraints) Performing minimization step: 3622. Total energy = 6105.9685 kcal/mol (6102.4151 without restraints) Performing minimization step: 3623. Total energy = 6104.6512 kcal/mol (6101.0980 without restraints) Performing minimization step: 3624. Total energy = 6103.3351 kcal/mol (6099.7822 without restraints) Performing minimization step: 3625. Total energy = 6102.0202 kcal/mol (6098.4674 without restraints) Performing minimization step: 3626. Total energy = 6100.7063 kcal/mol (6097.1538 without restraints) Performing minimization step: 3627. Total energy = 6099.3940 kcal/mol (6095.8417 without restraints) Performing minimization step: 3628. Total energy = 6098.0830 kcal/mol (6094.5309 without restraints) Performing minimization step: 3629. Total energy = 6096.7725 kcal/mol (6093.2206 without restraints) Performing minimization step: 3630. Total energy = 6095.4644 kcal/mol (6091.9127 without restraints) Performing minimization step: 3631. Total energy = 6094.1571 kcal/mol (6090.6056 without restraints) Performing minimization step: 3632. Total energy = 6092.8512 kcal/mol (6089.2999 without restraints) Performing minimization step: 3633. Total energy = 6091.5465 kcal/mol (6087.9954 without restraints) Performing minimization step: 3634. Total energy = 6090.2429 kcal/mol (6086.6919 without restraints) Performing minimization step: 3635. Total energy = 6088.9406 kcal/mol (6085.3900 without restraints) Performing minimization step: 3636. Total energy = 6087.6399 kcal/mol (6084.0895 without restraints) Performing minimization step: 3637. Total energy = 6086.3403 kcal/mol (6082.7901 without restraints) Performing minimization step: 3638. Total energy = 6085.0421 kcal/mol (6081.4921 without restraints) Performing minimization step: 3639. Total energy = 6083.7457 kcal/mol (6080.1959 without restraints) Performing minimization step: 3640. Total energy = 6082.4501 kcal/mol (6078.9005 without restraints) Performing minimization step: 3641. Total energy = 6081.1556 kcal/mol (6077.6062 without restraints) Performing minimization step: 3642. Total energy = 6079.8627 kcal/mol (6076.3135 without restraints) Performing minimization step: 3643. Total energy = 6078.5713 kcal/mol (6075.0224 without restraints) Performing minimization step: 3644. Total energy = 6077.2803 kcal/mol (6073.7313 without restraints) Performing minimization step: 3645. Total energy = 6075.9907 kcal/mol (6072.4422 without restraints) Performing minimization step: 3646. Total energy = 6074.7026 kcal/mol (6071.1543 without restraints) Performing minimization step: 3647. Total energy = 6073.4157 kcal/mol (6069.8676 without restraints) Performing minimization step: 3648. Total energy = 6072.1307 kcal/mol (6068.5828 without restraints) Performing minimization step: 3649. Total energy = 6070.8464 kcal/mol (6067.2986 without restraints) Performing minimization step: 3650. Total energy = 6069.5636 kcal/mol (6066.0161 without restraints) Performing minimization step: 3651. Total energy = 6068.2820 kcal/mol (6064.7347 without restraints) Performing minimization step: 3652. Total energy = 6067.0014 kcal/mol (6063.4543 without restraints) Performing minimization step: 3653. Total energy = 6065.7223 kcal/mol (6062.1754 without restraints) Performing minimization step: 3654. Total energy = 6064.4440 kcal/mol (6060.8974 without restraints) Performing minimization step: 3655. Total energy = 6063.1676 kcal/mol (6059.6211 without restraints) Performing minimization step: 3656. Total energy = 6061.8924 kcal/mol (6058.3462 without restraints) Performing minimization step: 3657. Total energy = 6060.6182 kcal/mol (6057.0721 without restraints) Performing minimization step: 3658. Total energy = 6059.3457 kcal/mol (6055.7999 without restraints) Performing minimization step: 3659. Total energy = 6058.0741 kcal/mol (6054.5286 without restraints) Performing minimization step: 3660. Total energy = 6056.8040 kcal/mol (6053.2586 without restraints) Performing minimization step: 3661. Total energy = 6055.5355 kcal/mol (6051.9904 without restraints) Performing minimization step: 3662. Total energy = 6054.2676 kcal/mol (6050.7225 without restraints) Performing minimization step: 3663. Total energy = 6053.0007 kcal/mol (6049.4559 without restraints) Performing minimization step: 3664. Total energy = 6051.7352 kcal/mol (6048.1906 without restraints) Performing minimization step: 3665. Total energy = 6050.4705 kcal/mol (6046.9261 without restraints) Performing minimization step: 3666. Total energy = 6049.2074 kcal/mol (6045.6632 without restraints) Performing minimization step: 3667. Total energy = 6047.9459 kcal/mol (6044.4019 without restraints) Performing minimization step: 3668. Total energy = 6046.6857 kcal/mol (6043.1418 without restraints) Performing minimization step: 3669. Total energy = 6045.4264 kcal/mol (6041.8827 without restraints) Performing minimization step: 3670. Total energy = 6044.1682 kcal/mol (6040.6247 without restraints) Performing minimization step: 3671. Total energy = 6042.9114 kcal/mol (6039.3681 without restraints) Performing minimization step: 3672. Total energy = 6041.6562 kcal/mol (6038.1133 without restraints) Performing minimization step: 3673. Total energy = 6040.4019 kcal/mol (6036.8590 without restraints) Performing minimization step: 3674. Total energy = 6039.1489 kcal/mol (6035.6062 without restraints) Performing minimization step: 3675. Total energy = 6037.8971 kcal/mol (6034.3545 without restraints) Performing minimization step: 3676. Total energy = 6036.6461 kcal/mol (6033.1038 without restraints) Performing minimization step: 3677. Total energy = 6035.3969 kcal/mol (6031.8549 without restraints) Performing minimization step: 3678. Total energy = 6034.1485 kcal/mol (6030.6065 without restraints) Performing minimization step: 3679. Total energy = 6032.9013 kcal/mol (6029.3597 without restraints) Performing minimization step: 3680. Total energy = 6031.6558 kcal/mol (6028.1144 without restraints) Performing minimization step: 3681. Total energy = 6030.4114 kcal/mol (6026.8702 without restraints) Performing minimization step: 3682. Total energy = 6029.1681 kcal/mol (6025.6269 without restraints) Performing minimization step: 3683. Total energy = 6027.9254 kcal/mol (6024.3845 without restraints) Performing minimization step: 3684. Total energy = 6026.6845 kcal/mol (6023.1437 without restraints) Performing minimization step: 3685. Total energy = 6025.4447 kcal/mol (6021.9042 without restraints) Performing minimization step: 3686. Total energy = 6024.2061 kcal/mol (6020.6658 without restraints) Performing minimization step: 3687. Total energy = 6022.9685 kcal/mol (6019.4283 without restraints) Performing minimization step: 3688. Total energy = 6021.7321 kcal/mol (6018.1922 without restraints) Performing minimization step: 3689. Total energy = 6020.4974 kcal/mol (6016.9576 without restraints) Performing minimization step: 3690. Total energy = 6019.2632 kcal/mol (6015.7235 without restraints) Performing minimization step: 3691. Total energy = 6018.0302 kcal/mol (6014.4909 without restraints) Performing minimization step: 3692. Total energy = 6016.7989 kcal/mol (6013.2597 without restraints) Performing minimization step: 3693. Total energy = 6015.5684 kcal/mol (6012.0293 without restraints) Performing minimization step: 3694. Total energy = 6014.3391 kcal/mol (6010.8002 without restraints) Performing minimization step: 3695. Total energy = 6013.1113 kcal/mol (6009.5727 without restraints) Performing minimization step: 3696. Total energy = 6011.8843 kcal/mol (6008.3457 without restraints) Performing minimization step: 3697. Total energy = 6010.6587 kcal/mol (6007.1204 without restraints) Performing minimization step: 3698. Total energy = 6009.4344 kcal/mol (6005.8963 without restraints) Performing minimization step: 3699. Total energy = 6008.2108 kcal/mol (6004.6727 without restraints) Performing minimization step: 3700. Total energy = 6006.9885 kcal/mol (6003.4508 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 6005.7675 kcal/mol (6002.2299 without restraints) Performing minimization step: 3702. Total energy = 6004.5476 kcal/mol (6001.0102 without restraints) Performing minimization step: 3703. Total energy = 6003.3290 kcal/mol (5999.7918 without restraints) Performing minimization step: 3704. Total energy = 6002.1115 kcal/mol (5998.5745 without restraints) Performing minimization step: 3705. Total energy = 6000.8951 kcal/mol (5997.3583 without restraints) Performing minimization step: 3706. Total energy = 5999.6801 kcal/mol (5996.1434 without restraints) Performing minimization step: 3707. Total energy = 5998.4659 kcal/mol (5994.9294 without restraints) Performing minimization step: 3708. Total energy = 5997.2529 kcal/mol (5993.7166 without restraints) Performing minimization step: 3709. Total energy = 5996.0411 kcal/mol (5992.5050 without restraints) Performing minimization step: 3710. Total energy = 5994.8308 kcal/mol (5991.2950 without restraints) Performing minimization step: 3711. Total energy = 5993.6213 kcal/mol (5990.0856 without restraints) Performing minimization step: 3712. Total energy = 5992.4126 kcal/mol (5988.8770 without restraints) Performing minimization step: 3713. Total energy = 5991.2057 kcal/mol (5987.6703 without restraints) Performing minimization step: 3714. Total energy = 5989.9997 kcal/mol (5986.4645 without restraints) Performing minimization step: 3715. Total energy = 5988.7949 kcal/mol (5985.2598 without restraints) Performing minimization step: 3716. Total energy = 5987.5918 kcal/mol (5984.0572 without restraints) Performing minimization step: 3717. Total energy = 5986.3898 kcal/mol (5982.8551 without restraints) Performing minimization step: 3718. Total energy = 5985.1884 kcal/mol (5981.6539 without restraints) Performing minimization step: 3719. Total energy = 5983.9881 kcal/mol (5980.4538 without restraints) Performing minimization step: 3720. Total energy = 5982.7893 kcal/mol (5979.2552 without restraints) Performing minimization step: 3721. Total energy = 5981.5916 kcal/mol (5978.0576 without restraints) Performing minimization step: 3722. Total energy = 5980.3950 kcal/mol (5976.8612 without restraints) Performing minimization step: 3723. Total energy = 5979.1996 kcal/mol (5975.6660 without restraints) Performing minimization step: 3724. Total energy = 5978.0053 kcal/mol (5974.4719 without restraints) Performing minimization step: 3725. Total energy = 5976.8126 kcal/mol (5973.2793 without restraints) Performing minimization step: 3726. Total energy = 5975.6203 kcal/mol (5972.0873 without restraints) Performing minimization step: 3727. Total energy = 5974.4292 kcal/mol (5970.8963 without restraints) Performing minimization step: 3728. Total energy = 5973.2392 kcal/mol (5969.7064 without restraints) Performing minimization step: 3729. Total energy = 5972.0502 kcal/mol (5968.5177 without restraints) Performing minimization step: 3730. Total energy = 5970.8632 kcal/mol (5967.3309 without restraints) Performing minimization step: 3731. Total energy = 5969.6764 kcal/mol (5966.1443 without restraints) Performing minimization step: 3732. Total energy = 5968.4914 kcal/mol (5964.9595 without restraints) Performing minimization step: 3733. Total energy = 5967.3076 kcal/mol (5963.7757 without restraints) Performing minimization step: 3734. Total energy = 5966.1243 kcal/mol (5962.5926 without restraints) Performing minimization step: 3735. Total energy = 5964.9426 kcal/mol (5961.4112 without restraints) Performing minimization step: 3736. Total energy = 5963.7618 kcal/mol (5960.2306 without restraints) Performing minimization step: 3737. Total energy = 5962.5822 kcal/mol (5959.0511 without restraints) Performing minimization step: 3738. Total energy = 5961.4039 kcal/mol (5957.8729 without restraints) Performing minimization step: 3739. Total energy = 5960.2265 kcal/mol (5956.6956 without restraints) Performing minimization step: 3740. Total energy = 5959.0502 kcal/mol (5955.5195 without restraints) Performing minimization step: 3741. Total energy = 5957.8748 kcal/mol (5954.3443 without restraints) Performing minimization step: 3742. Total energy = 5956.7007 kcal/mol (5953.1704 without restraints) Performing minimization step: 3743. Total energy = 5955.5278 kcal/mol (5951.9977 without restraints) Performing minimization step: 3744. Total energy = 5954.3559 kcal/mol (5950.8259 without restraints) Performing minimization step: 3745. Total energy = 5953.1855 kcal/mol (5949.6557 without restraints) Performing minimization step: 3746. Total energy = 5952.0157 kcal/mol (5948.4860 without restraints) Performing minimization step: 3747. Total energy = 5950.8469 kcal/mol (5947.3172 without restraints) Performing minimization step: 3748. Total energy = 5949.6791 kcal/mol (5946.1498 without restraints) Performing minimization step: 3749. Total energy = 5948.5125 kcal/mol (5944.9834 without restraints) Performing minimization step: 3750. Total energy = 5947.3476 kcal/mol (5943.8186 without restraints) Performing minimization step: 3751. Total energy = 5946.1834 kcal/mol (5942.6547 without restraints) Performing minimization step: 3752. Total energy = 5945.0206 kcal/mol (5941.4919 without restraints) Performing minimization step: 3753. Total energy = 5943.8586 kcal/mol (5940.3301 without restraints) Performing minimization step: 3754. Total energy = 5942.6978 kcal/mol (5939.1694 without restraints) Performing minimization step: 3755. Total energy = 5941.5380 kcal/mol (5938.0099 without restraints) Performing minimization step: 3756. Total energy = 5940.3795 kcal/mol (5936.8516 without restraints) Performing minimization step: 3757. Total energy = 5939.2218 kcal/mol (5935.6940 without restraints) Performing minimization step: 3758. Total energy = 5938.0656 kcal/mol (5934.5379 without restraints) Performing minimization step: 3759. Total energy = 5936.9103 kcal/mol (5933.3828 without restraints) Performing minimization step: 3760. Total energy = 5935.7560 kcal/mol (5932.2286 without restraints) Performing minimization step: 3761. Total energy = 5934.6026 kcal/mol (5931.0754 without restraints) Performing minimization step: 3762. Total energy = 5933.4501 kcal/mol (5929.9231 without restraints) Performing minimization step: 3763. Total energy = 5932.2989 kcal/mol (5928.7720 without restraints) Performing minimization step: 3764. Total energy = 5931.1488 kcal/mol (5927.6221 without restraints) Performing minimization step: 3765. Total energy = 5929.9997 kcal/mol (5926.4732 without restraints) Performing minimization step: 3766. Total energy = 5928.8518 kcal/mol (5925.3254 without restraints) Performing minimization step: 3767. Total energy = 5927.7047 kcal/mol (5924.1785 without restraints) Performing minimization step: 3768. Total energy = 5926.5590 kcal/mol (5923.0331 without restraints) Performing minimization step: 3769. Total energy = 5925.4144 kcal/mol (5921.8885 without restraints) Performing minimization step: 3770. Total energy = 5924.2709 kcal/mol (5920.7452 without restraints) Performing minimization step: 3771. Total energy = 5923.1284 kcal/mol (5919.6028 without restraints) Performing minimization step: 3772. Total energy = 5921.9869 kcal/mol (5918.4615 without restraints) Performing minimization step: 3773. Total energy = 5920.8465 kcal/mol (5917.3212 without restraints) Performing minimization step: 3774. Total energy = 5919.7072 kcal/mol (5916.1821 without restraints) Performing minimization step: 3775. Total energy = 5918.5687 kcal/mol (5915.0437 without restraints) Performing minimization step: 3776. Total energy = 5917.4313 kcal/mol (5913.9065 without restraints) Performing minimization step: 3777. Total energy = 5916.2954 kcal/mol (5912.7708 without restraints) Performing minimization step: 3778. Total energy = 5915.1606 kcal/mol (5911.6361 without restraints) Performing minimization step: 3779. Total energy = 5914.0265 kcal/mol (5910.5022 without restraints) Performing minimization step: 3780. Total energy = 5912.8938 kcal/mol (5909.3696 without restraints) Performing minimization step: 3781. Total energy = 5911.7621 kcal/mol (5908.2381 without restraints) Performing minimization step: 3782. Total energy = 5910.6315 kcal/mol (5907.1076 without restraints) Performing minimization step: 3783. Total energy = 5909.5017 kcal/mol (5905.9780 without restraints) Performing minimization step: 3784. Total energy = 5908.3729 kcal/mol (5904.8494 without restraints) Performing minimization step: 3785. Total energy = 5907.2450 kcal/mol (5903.7216 without restraints) Performing minimization step: 3786. Total energy = 5906.1184 kcal/mol (5902.5951 without restraints) Performing minimization step: 3787. Total energy = 5904.9930 kcal/mol (5901.4701 without restraints) Performing minimization step: 3788. Total energy = 5903.8689 kcal/mol (5900.3459 without restraints) Performing minimization step: 3789. Total energy = 5902.7455 kcal/mol (5899.2226 without restraints) Performing minimization step: 3790. Total energy = 5901.6232 kcal/mol (5898.1006 without restraints) Performing minimization step: 3791. Total energy = 5900.5024 kcal/mol (5896.9800 without restraints) Performing minimization step: 3792. Total energy = 5899.3830 kcal/mol (5895.8607 without restraints) Performing minimization step: 3793. Total energy = 5898.2639 kcal/mol (5894.7417 without restraints) Performing minimization step: 3794. Total energy = 5897.1458 kcal/mol (5893.6237 without restraints) Performing minimization step: 3795. Total energy = 5896.0287 kcal/mol (5892.5068 without restraints) Performing minimization step: 3796. Total energy = 5894.9132 kcal/mol (5891.3915 without restraints) Performing minimization step: 3797. Total energy = 5893.7982 kcal/mol (5890.2766 without restraints) Performing minimization step: 3798. Total energy = 5892.6844 kcal/mol (5889.1629 without restraints) Performing minimization step: 3799. Total energy = 5891.5714 kcal/mol (5888.0500 without restraints) Performing minimization step: 3800. Total energy = 5890.4597 kcal/mol (5886.9385 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 5889.3488 kcal/mol (5885.8278 without restraints) Performing minimization step: 3802. Total energy = 5888.2390 kcal/mol (5884.7181 without restraints) Performing minimization step: 3803. Total energy = 5887.1304 kcal/mol (5883.6097 without restraints) Performing minimization step: 3804. Total energy = 5886.0226 kcal/mol (5882.5020 without restraints) Performing minimization step: 3805. Total energy = 5884.9170 kcal/mol (5881.3966 without restraints) Performing minimization step: 3806. Total energy = 5883.8117 kcal/mol (5880.2914 without restraints) Performing minimization step: 3807. Total energy = 5882.7070 kcal/mol (5879.1869 without restraints) Performing minimization step: 3808. Total energy = 5881.6036 kcal/mol (5878.0836 without restraints) Performing minimization step: 3809. Total energy = 5880.5014 kcal/mol (5876.9815 without restraints) Performing minimization step: 3810. Total energy = 5879.4000 kcal/mol (5875.8802 without restraints) Performing minimization step: 3811. Total energy = 5878.2992 kcal/mol (5874.7796 without restraints) Performing minimization step: 3812. Total energy = 5877.1999 kcal/mol (5873.6805 without restraints) Performing minimization step: 3813. Total energy = 5876.1014 kcal/mol (5872.5821 without restraints) Performing minimization step: 3814. Total energy = 5875.0042 kcal/mol (5871.4849 without restraints) Performing minimization step: 3815. Total energy = 5873.9076 kcal/mol (5870.3886 without restraints) Performing minimization step: 3816. Total energy = 5872.8124 kcal/mol (5869.2935 without restraints) Performing minimization step: 3817. Total energy = 5871.7180 kcal/mol (5868.1993 without restraints) Performing minimization step: 3818. Total energy = 5870.6248 kcal/mol (5867.1062 without restraints) Performing minimization step: 3819. Total energy = 5869.5328 kcal/mol (5866.0143 without restraints) Performing minimization step: 3820. Total energy = 5868.4413 kcal/mol (5864.9230 without restraints) Performing minimization step: 3821. Total energy = 5867.3510 kcal/mol (5863.8328 without restraints) Performing minimization step: 3822. Total energy = 5866.2618 kcal/mol (5862.7438 without restraints) Performing minimization step: 3823. Total energy = 5865.1736 kcal/mol (5861.6556 without restraints) Performing minimization step: 3824. Total energy = 5864.0860 kcal/mol (5860.5682 without restraints) Performing minimization step: 3825. Total energy = 5862.9999 kcal/mol (5859.4823 without restraints) Performing minimization step: 3826. Total energy = 5861.9147 kcal/mol (5858.3973 without restraints) Performing minimization step: 3827. Total energy = 5860.8306 kcal/mol (5857.3132 without restraints) Performing minimization step: 3828. Total energy = 5859.7474 kcal/mol (5856.2303 without restraints) Performing minimization step: 3829. Total energy = 5858.6656 kcal/mol (5855.1487 without restraints) Performing minimization step: 3830. Total energy = 5857.5847 kcal/mol (5854.0678 without restraints) Performing minimization step: 3831. Total energy = 5856.5049 kcal/mol (5852.9880 without restraints) Performing minimization step: 3832. Total energy = 5855.4260 kcal/mol (5851.9093 without restraints) Performing minimization step: 3833. Total energy = 5854.3480 kcal/mol (5850.8314 without restraints) Performing minimization step: 3834. Total energy = 5853.2707 kcal/mol (5849.7542 without restraints) Performing minimization step: 3835. Total energy = 5852.1944 kcal/mol (5848.6781 without restraints) Performing minimization step: 3836. Total energy = 5851.1193 kcal/mol (5847.6032 without restraints) Performing minimization step: 3837. Total energy = 5850.0452 kcal/mol (5846.5292 without restraints) Performing minimization step: 3838. Total energy = 5848.9721 kcal/mol (5845.4563 without restraints) Performing minimization step: 3839. Total energy = 5847.8997 kcal/mol (5844.3840 without restraints) Performing minimization step: 3840. Total energy = 5846.8285 kcal/mol (5843.3129 without restraints) Performing minimization step: 3841. Total energy = 5845.7583 kcal/mol (5842.2428 without restraints) Performing minimization step: 3842. Total energy = 5844.6893 kcal/mol (5841.1739 without restraints) Performing minimization step: 3843. Total energy = 5843.6213 kcal/mol (5840.1060 without restraints) Performing minimization step: 3844. Total energy = 5842.5542 kcal/mol (5839.0391 without restraints) Performing minimization step: 3845. Total energy = 5841.4885 kcal/mol (5837.9735 without restraints) Performing minimization step: 3846. Total energy = 5840.4233 kcal/mol (5836.9085 without restraints) Performing minimization step: 3847. Total energy = 5839.3592 kcal/mol (5835.8445 without restraints) Performing minimization step: 3848. Total energy = 5838.2961 kcal/mol (5834.7815 without restraints) Performing minimization step: 3849. Total energy = 5837.2338 kcal/mol (5833.7193 without restraints) Performing minimization step: 3850. Total energy = 5836.1725 kcal/mol (5832.6582 without restraints) Performing minimization step: 3851. Total energy = 5835.1122 kcal/mol (5831.5980 without restraints) Performing minimization step: 3852. Total energy = 5834.0526 kcal/mol (5830.5385 without restraints) Performing minimization step: 3853. Total energy = 5832.9941 kcal/mol (5829.4802 without restraints) Performing minimization step: 3854. Total energy = 5831.9370 kcal/mol (5828.4232 without restraints) Performing minimization step: 3855. Total energy = 5830.8809 kcal/mol (5827.3673 without restraints) Performing minimization step: 3856. Total energy = 5829.8257 kcal/mol (5826.3122 without restraints) Performing minimization step: 3857. Total energy = 5828.7713 kcal/mol (5825.2579 without restraints) Performing minimization step: 3858. Total energy = 5827.7176 kcal/mol (5824.2043 without restraints) Performing minimization step: 3859. Total energy = 5826.6651 kcal/mol (5823.1519 without restraints) Performing minimization step: 3860. Total energy = 5825.6137 kcal/mol (5822.1007 without restraints) Performing minimization step: 3861. Total energy = 5824.5632 kcal/mol (5821.0501 without restraints) Performing minimization step: 3862. Total energy = 5823.5137 kcal/mol (5820.0008 without restraints) Performing minimization step: 3863. Total energy = 5822.4645 kcal/mol (5818.9518 without restraints) Performing minimization step: 3864. Total energy = 5821.4174 kcal/mol (5817.9049 without restraints) Performing minimization step: 3865. Total energy = 5820.3714 kcal/mol (5816.8589 without restraints) Performing minimization step: 3866. Total energy = 5819.3259 kcal/mol (5815.8136 without restraints) Performing minimization step: 3867. Total energy = 5818.2810 kcal/mol (5814.7688 without restraints) Performing minimization step: 3868. Total energy = 5817.2369 kcal/mol (5813.7248 without restraints) Performing minimization step: 3869. Total energy = 5816.1942 kcal/mol (5812.6822 without restraints) Performing minimization step: 3870. Total energy = 5815.1525 kcal/mol (5811.6407 without restraints) Performing minimization step: 3871. Total energy = 5814.1116 kcal/mol (5810.6000 without restraints) Performing minimization step: 3872. Total energy = 5813.0719 kcal/mol (5809.5603 without restraints) Performing minimization step: 3873. Total energy = 5812.0331 kcal/mol (5808.5216 without restraints) Performing minimization step: 3874. Total energy = 5810.9950 kcal/mol (5807.4836 without restraints) Performing minimization step: 3875. Total energy = 5809.9575 kcal/mol (5806.4462 without restraints) Performing minimization step: 3876. Total energy = 5808.9213 kcal/mol (5805.4101 without restraints) Performing minimization step: 3877. Total energy = 5807.8859 kcal/mol (5804.3749 without restraints) Performing minimization step: 3878. Total energy = 5806.8515 kcal/mol (5803.3406 without restraints) Performing minimization step: 3879. Total energy = 5805.8182 kcal/mol (5802.3075 without restraints) Performing minimization step: 3880. Total energy = 5804.7864 kcal/mol (5801.2757 without restraints) Performing minimization step: 3881. Total energy = 5803.7549 kcal/mol (5800.2444 without restraints) Performing minimization step: 3882. Total energy = 5802.7244 kcal/mol (5799.2140 without restraints) Performing minimization step: 3883. Total energy = 5801.6949 kcal/mol (5798.1845 without restraints) Performing minimization step: 3884. Total energy = 5800.6662 kcal/mol (5797.1559 without restraints) Performing minimization step: 3885. Total energy = 5799.6387 kcal/mol (5796.1285 without restraints) Performing minimization step: 3886. Total energy = 5798.6119 kcal/mol (5795.1019 without restraints) Performing minimization step: 3887. Total energy = 5797.5857 kcal/mol (5794.0759 without restraints) Performing minimization step: 3888. Total energy = 5796.5609 kcal/mol (5793.0511 without restraints) Performing minimization step: 3889. Total energy = 5795.5370 kcal/mol (5792.0273 without restraints) Performing minimization step: 3890. Total energy = 5794.5141 kcal/mol (5791.0046 without restraints) Performing minimization step: 3891. Total energy = 5793.4923 kcal/mol (5789.9828 without restraints) Performing minimization step: 3892. Total energy = 5792.4717 kcal/mol (5788.9624 without restraints) Performing minimization step: 3893. Total energy = 5791.4512 kcal/mol (5787.9420 without restraints) Performing minimization step: 3894. Total energy = 5790.4323 kcal/mol (5786.9232 without restraints) Performing minimization step: 3895. Total energy = 5789.4139 kcal/mol (5785.9049 without restraints) Performing minimization step: 3896. Total energy = 5788.3965 kcal/mol (5784.8876 without restraints) Performing minimization step: 3897. Total energy = 5787.3806 kcal/mol (5783.8719 without restraints) Performing minimization step: 3898. Total energy = 5786.3658 kcal/mol (5782.8572 without restraints) Performing minimization step: 3899. Total energy = 5785.3514 kcal/mol (5781.8429 without restraints) Performing minimization step: 3900. Total energy = 5784.3378 kcal/mol (5780.8294 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 5783.3249 kcal/mol (5779.8167 without restraints) Performing minimization step: 3902. Total energy = 5782.3135 kcal/mol (5778.8052 without restraints) Performing minimization step: 3903. Total energy = 5781.3026 kcal/mol (5777.7945 without restraints) Performing minimization step: 3904. Total energy = 5780.2927 kcal/mol (5776.7847 without restraints) Performing minimization step: 3905. Total energy = 5779.2836 kcal/mol (5775.7757 without restraints) Performing minimization step: 3906. Total energy = 5778.2752 kcal/mol (5774.7674 without restraints) Performing minimization step: 3907. Total energy = 5777.2684 kcal/mol (5773.7607 without restraints) Performing minimization step: 3908. Total energy = 5776.2623 kcal/mol (5772.7547 without restraints) Performing minimization step: 3909. Total energy = 5775.2569 kcal/mol (5771.7494 without restraints) Performing minimization step: 3910. Total energy = 5774.2526 kcal/mol (5770.7452 without restraints) Performing minimization step: 3911. Total energy = 5773.2490 kcal/mol (5769.7417 without restraints) Performing minimization step: 3912. Total energy = 5772.2463 kcal/mol (5768.7391 without restraints) Performing minimization step: 3913. Total energy = 5771.2448 kcal/mol (5767.7377 without restraints) Performing minimization step: 3914. Total energy = 5770.2440 kcal/mol (5766.7370 without restraints) Performing minimization step: 3915. Total energy = 5769.2444 kcal/mol (5765.7376 without restraints) Performing minimization step: 3916. Total energy = 5768.2459 kcal/mol (5764.7392 without restraints) Performing minimization step: 3917. Total energy = 5767.2480 kcal/mol (5763.7413 without restraints) Performing minimization step: 3918. Total energy = 5766.2508 kcal/mol (5762.7442 without restraints) Performing minimization step: 3919. Total energy = 5765.2545 kcal/mol (5761.7481 without restraints) Performing minimization step: 3920. Total energy = 5764.2591 kcal/mol (5760.7527 without restraints) Performing minimization step: 3921. Total energy = 5763.2652 kcal/mol (5759.7589 without restraints) Performing minimization step: 3922. Total energy = 5762.2714 kcal/mol (5758.7651 without restraints) Performing minimization step: 3923. Total energy = 5761.2783 kcal/mol (5757.7722 without restraints) Performing minimization step: 3924. Total energy = 5760.2866 kcal/mol (5756.7806 without restraints) Performing minimization step: 3925. Total energy = 5759.2957 kcal/mol (5755.7897 without restraints) Performing minimization step: 3926. Total energy = 5758.3059 kcal/mol (5754.8002 without restraints) Performing minimization step: 3927. Total energy = 5757.3173 kcal/mol (5753.8115 without restraints) Performing minimization step: 3928. Total energy = 5756.3290 kcal/mol (5752.8234 without restraints) Performing minimization step: 3929. Total energy = 5755.3421 kcal/mol (5751.8365 without restraints) Performing minimization step: 3930. Total energy = 5754.3554 kcal/mol (5750.8499 without restraints) Performing minimization step: 3931. Total energy = 5753.3700 kcal/mol (5749.8647 without restraints) Performing minimization step: 3932. Total energy = 5752.3851 kcal/mol (5748.8798 without restraints) Performing minimization step: 3933. Total energy = 5751.4014 kcal/mol (5747.8963 without restraints) Performing minimization step: 3934. Total energy = 5750.4185 kcal/mol (5746.9134 without restraints) Performing minimization step: 3935. Total energy = 5749.4366 kcal/mol (5745.9317 without restraints) Performing minimization step: 3936. Total energy = 5748.4563 kcal/mol (5744.9515 without restraints) Performing minimization step: 3937. Total energy = 5747.4763 kcal/mol (5743.9715 without restraints) Performing minimization step: 3938. Total energy = 5746.4969 kcal/mol (5742.9924 without restraints) Performing minimization step: 3939. Total energy = 5745.5187 kcal/mol (5742.0141 without restraints) Performing minimization step: 3940. Total energy = 5744.5415 kcal/mol (5741.0370 without restraints) Performing minimization step: 3941. Total energy = 5743.5647 kcal/mol (5740.0603 without restraints) Performing minimization step: 3942. Total energy = 5742.5890 kcal/mol (5739.0847 without restraints) Performing minimization step: 3943. Total energy = 5741.6143 kcal/mol (5738.1101 without restraints) Performing minimization step: 3944. Total energy = 5740.6398 kcal/mol (5737.1356 without restraints) Performing minimization step: 3945. Total energy = 5739.6666 kcal/mol (5736.1626 without restraints) Performing minimization step: 3946. Total energy = 5738.6942 kcal/mol (5735.1902 without restraints) Performing minimization step: 3947. Total energy = 5737.7228 kcal/mol (5734.2189 without restraints) Performing minimization step: 3948. Total energy = 5736.7518 kcal/mol (5733.2480 without restraints) Performing minimization step: 3949. Total energy = 5735.7823 kcal/mol (5732.2786 without restraints) Performing minimization step: 3950. Total energy = 5734.8133 kcal/mol (5731.3097 without restraints) Performing minimization step: 3951. Total energy = 5733.8452 kcal/mol (5730.3417 without restraints) Performing minimization step: 3952. Total energy = 5732.8780 kcal/mol (5729.3747 without restraints) Performing minimization step: 3953. Total energy = 5731.9116 kcal/mol (5728.4079 without restraints) Performing minimization step: 3954. Total energy = 5730.9460 kcal/mol (5727.4427 without restraints) Performing minimization step: 3955. Total energy = 5729.9812 kcal/mol (5726.4780 without restraints) Performing minimization step: 3956. Total energy = 5729.0174 kcal/mol (5725.5143 without restraints) Performing minimization step: 3957. Total energy = 5728.0546 kcal/mol (5724.5517 without restraints) Performing minimization step: 3958. Total energy = 5727.0929 kcal/mol (5723.5901 without restraints) Performing minimization step: 3959. Total energy = 5726.1320 kcal/mol (5722.6291 without restraints) Performing minimization step: 3960. Total energy = 5725.1714 kcal/mol (5721.6686 without restraints) Performing minimization step: 3961. Total energy = 5724.2118 kcal/mol (5720.7091 without restraints) Performing minimization step: 3962. Total energy = 5723.2533 kcal/mol (5719.7507 without restraints) Performing minimization step: 3963. Total energy = 5722.2953 kcal/mol (5718.7926 without restraints) Performing minimization step: 3964. Total energy = 5721.3382 kcal/mol (5717.8359 without restraints) Performing minimization step: 3965. Total energy = 5720.3822 kcal/mol (5716.8798 without restraints) Performing minimization step: 3966. Total energy = 5719.4267 kcal/mol (5715.9243 without restraints) Performing minimization step: 3967. Total energy = 5718.4723 kcal/mol (5714.9701 without restraints) Performing minimization step: 3968. Total energy = 5717.5187 kcal/mol (5714.0166 without restraints) Performing minimization step: 3969. Total energy = 5716.5660 kcal/mol (5713.0639 without restraints) Performing minimization step: 3970. Total energy = 5715.6142 kcal/mol (5712.1124 without restraints) Performing minimization step: 3971. Total energy = 5714.6633 kcal/mol (5711.1614 without restraints) Performing minimization step: 3972. Total energy = 5713.7133 kcal/mol (5710.2114 without restraints) Performing minimization step: 3973. Total energy = 5712.7637 kcal/mol (5709.2619 without restraints) Performing minimization step: 3974. Total energy = 5711.8151 kcal/mol (5708.3135 without restraints) Performing minimization step: 3975. Total energy = 5710.8675 kcal/mol (5707.3658 without restraints) Performing minimization step: 3976. Total energy = 5709.9205 kcal/mol (5706.4190 without restraints) Performing minimization step: 3977. Total energy = 5708.9745 kcal/mol (5705.4730 without restraints) Performing minimization step: 3978. Total energy = 5708.0292 kcal/mol (5704.5278 without restraints) Performing minimization step: 3979. Total energy = 5707.0855 kcal/mol (5703.5842 without restraints) Performing minimization step: 3980. Total energy = 5706.1421 kcal/mol (5702.6408 without restraints) Performing minimization step: 3981. Total energy = 5705.1994 kcal/mol (5701.6984 without restraints) Performing minimization step: 3982. Total energy = 5704.2578 kcal/mol (5700.7566 without restraints) Performing minimization step: 3983. Total energy = 5703.3165 kcal/mol (5699.8154 without restraints) Performing minimization step: 3984. Total energy = 5702.3763 kcal/mol (5698.8754 without restraints) Performing minimization step: 3985. Total energy = 5701.4367 kcal/mol (5697.9357 without restraints) Performing minimization step: 3986. Total energy = 5700.4981 kcal/mol (5696.9972 without restraints) Performing minimization step: 3987. Total energy = 5699.5599 kcal/mol (5696.0592 without restraints) Performing minimization step: 3988. Total energy = 5698.6232 kcal/mol (5695.1226 without restraints) Performing minimization step: 3989. Total energy = 5697.6870 kcal/mol (5694.1865 without restraints) Performing minimization step: 3990. Total energy = 5696.7520 kcal/mol (5693.2514 without restraints) Performing minimization step: 3991. Total energy = 5695.8172 kcal/mol (5692.3166 without restraints) Performing minimization step: 3992. Total energy = 5694.8830 kcal/mol (5691.3826 without restraints) Performing minimization step: 3993. Total energy = 5693.9502 kcal/mol (5690.4498 without restraints) Performing minimization step: 3994. Total energy = 5693.0183 kcal/mol (5689.5180 without restraints) Performing minimization step: 3995. Total energy = 5692.0870 kcal/mol (5688.5868 without restraints) Performing minimization step: 3996. Total energy = 5691.1563 kcal/mol (5687.6562 without restraints) Performing minimization step: 3997. Total energy = 5690.2275 kcal/mol (5686.7275 without restraints) Performing minimization step: 3998. Total energy = 5689.2987 kcal/mol (5685.7986 without restraints) Performing minimization step: 3999. Total energy = 5688.3705 kcal/mol (5684.8705 without restraints) Performing minimization step: 4000. Total energy = 5687.4431 kcal/mol (5683.9432 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 5686.5169 kcal/mol (5683.0170 without restraints) Performing minimization step: 4002. Total energy = 5685.5915 kcal/mol (5682.0917 without restraints) Performing minimization step: 4003. Total energy = 5684.6665 kcal/mol (5681.1668 without restraints) Performing minimization step: 4004. Total energy = 5683.7424 kcal/mol (5680.2428 without restraints) Performing minimization step: 4005. Total energy = 5682.8190 kcal/mol (5679.3195 without restraints) Performing minimization step: 4006. Total energy = 5681.8966 kcal/mol (5678.3971 without restraints) Performing minimization step: 4007. Total energy = 5680.9746 kcal/mol (5677.4751 without restraints) Performing minimization step: 4008. Total energy = 5680.0536 kcal/mol (5676.5542 without restraints) Performing minimization step: 4009. Total energy = 5679.1334 kcal/mol (5675.6340 without restraints) Performing minimization step: 4010. Total energy = 5678.2139 kcal/mol (5674.7147 without restraints) Performing minimization step: 4011. Total energy = 5677.2953 kcal/mol (5673.7960 without restraints) Performing minimization step: 4012. Total energy = 5676.3773 kcal/mol (5672.8782 without restraints) Performing minimization step: 4013. Total energy = 5675.4603 kcal/mol (5671.9612 without restraints) Performing minimization step: 4014. Total energy = 5674.5440 kcal/mol (5671.0449 without restraints) Performing minimization step: 4015. Total energy = 5673.6284 kcal/mol (5670.1294 without restraints) Performing minimization step: 4016. Total energy = 5672.7135 kcal/mol (5669.2144 without restraints) Performing minimization step: 4017. Total energy = 5671.7995 kcal/mol (5668.3007 without restraints) Performing minimization step: 4018. Total energy = 5670.8865 kcal/mol (5667.3877 without restraints) Performing minimization step: 4019. Total energy = 5669.9742 kcal/mol (5666.4755 without restraints) Performing minimization step: 4020. Total energy = 5669.0627 kcal/mol (5665.5640 without restraints) Performing minimization step: 4021. Total energy = 5668.1520 kcal/mol (5664.6533 without restraints) Performing minimization step: 4022. Total energy = 5667.2419 kcal/mol (5663.7433 without restraints) Performing minimization step: 4023. Total energy = 5666.3326 kcal/mol (5662.8340 without restraints) Performing minimization step: 4024. Total energy = 5665.4241 kcal/mol (5661.9257 without restraints) Performing minimization step: 4025. Total energy = 5664.5164 kcal/mol (5661.0180 without restraints) Performing minimization step: 4026. Total energy = 5663.6098 kcal/mol (5660.1114 without restraints) Performing minimization step: 4027. Total energy = 5662.7040 kcal/mol (5659.2056 without restraints) Performing minimization step: 4028. Total energy = 5661.7985 kcal/mol (5658.3002 without restraints) Performing minimization step: 4029. Total energy = 5660.8938 kcal/mol (5657.3955 without restraints) Performing minimization step: 4030. Total energy = 5659.9898 kcal/mol (5656.4917 without restraints) Performing minimization step: 4031. Total energy = 5659.0867 kcal/mol (5655.5886 without restraints) Performing minimization step: 4032. Total energy = 5658.1847 kcal/mol (5654.6866 without restraints) Performing minimization step: 4033. Total energy = 5657.2833 kcal/mol (5653.7852 without restraints) Performing minimization step: 4034. Total energy = 5656.3826 kcal/mol (5652.8846 without restraints) Performing minimization step: 4035. Total energy = 5655.4824 kcal/mol (5651.9844 without restraints) Performing minimization step: 4036. Total energy = 5654.5833 kcal/mol (5651.0854 without restraints) Performing minimization step: 4037. Total energy = 5653.6848 kcal/mol (5650.1869 without restraints) Performing minimization step: 4038. Total energy = 5652.7866 kcal/mol (5649.2888 without restraints) Performing minimization step: 4039. Total energy = 5651.8893 kcal/mol (5648.3917 without restraints) Performing minimization step: 4040. Total energy = 5650.9930 kcal/mol (5647.4953 without restraints) Performing minimization step: 4041. Total energy = 5650.0974 kcal/mol (5646.5998 without restraints) Performing minimization step: 4042. Total energy = 5649.2025 kcal/mol (5645.7049 without restraints) Performing minimization step: 4043. Total energy = 5648.3083 kcal/mol (5644.8107 without restraints) Performing minimization step: 4044. Total energy = 5647.4150 kcal/mol (5643.9175 without restraints) Performing minimization step: 4045. Total energy = 5646.5222 kcal/mol (5643.0246 without restraints) Performing minimization step: 4046. Total energy = 5645.6300 kcal/mol (5642.1325 without restraints) Performing minimization step: 4047. Total energy = 5644.7394 kcal/mol (5641.2419 without restraints) Performing minimization step: 4048. Total energy = 5643.8493 kcal/mol (5640.3519 without restraints) Performing minimization step: 4049. Total energy = 5642.9599 kcal/mol (5639.4625 without restraints) Performing minimization step: 4050. Total energy = 5642.0717 kcal/mol (5638.5746 without restraints) Performing minimization step: 4051. Total energy = 5641.1840 kcal/mol (5637.6868 without restraints) Performing minimization step: 4052. Total energy = 5640.2969 kcal/mol (5636.7997 without restraints) Performing minimization step: 4053. Total energy = 5639.4107 kcal/mol (5635.9135 without restraints) Performing minimization step: 4054. Total energy = 5638.5251 kcal/mol (5635.0280 without restraints) Performing minimization step: 4055. Total energy = 5637.6399 kcal/mol (5634.1427 without restraints) Performing minimization step: 4056. Total energy = 5636.7556 kcal/mol (5633.2586 without restraints) Performing minimization step: 4057. Total energy = 5635.8720 kcal/mol (5632.3750 without restraints) Performing minimization step: 4058. Total energy = 5634.9887 kcal/mol (5631.4918 without restraints) Performing minimization step: 4059. Total energy = 5634.1071 kcal/mol (5630.6103 without restraints) Performing minimization step: 4060. Total energy = 5633.2257 kcal/mol (5629.7289 without restraints) Performing minimization step: 4061. Total energy = 5632.3448 kcal/mol (5628.8478 without restraints) Performing minimization step: 4062. Total energy = 5631.4645 kcal/mol (5627.9677 without restraints) Performing minimization step: 4063. Total energy = 5630.5851 kcal/mol (5627.0884 without restraints) Performing minimization step: 4064. Total energy = 5629.7065 kcal/mol (5626.2098 without restraints) Performing minimization step: 4065. Total energy = 5628.8286 kcal/mol (5625.3318 without restraints) Performing minimization step: 4066. Total energy = 5627.9517 kcal/mol (5624.4550 without restraints) Performing minimization step: 4067. Total energy = 5627.0755 kcal/mol (5623.5789 without restraints) Performing minimization step: 4068. Total energy = 5626.1997 kcal/mol (5622.7031 without restraints) Performing minimization step: 4069. Total energy = 5625.3248 kcal/mol (5621.8282 without restraints) Performing minimization step: 4070. Total energy = 5624.4504 kcal/mol (5620.9538 without restraints) Performing minimization step: 4071. Total energy = 5623.5767 kcal/mol (5620.0802 without restraints) Performing minimization step: 4072. Total energy = 5622.7041 kcal/mol (5619.2075 without restraints) Performing minimization step: 4073. Total energy = 5621.8320 kcal/mol (5618.3357 without restraints) Performing minimization step: 4074. Total energy = 5620.9609 kcal/mol (5617.4645 without restraints) Performing minimization step: 4075. Total energy = 5620.0901 kcal/mol (5616.5937 without restraints) Performing minimization step: 4076. Total energy = 5619.2200 kcal/mol (5615.7236 without restraints) Performing minimization step: 4077. Total energy = 5618.3505 kcal/mol (5614.8542 without restraints) Performing minimization step: 4078. Total energy = 5617.4817 kcal/mol (5613.9853 without restraints) Performing minimization step: 4079. Total energy = 5616.6137 kcal/mol (5613.1175 without restraints) Performing minimization step: 4080. Total energy = 5615.7465 kcal/mol (5612.2502 without restraints) Performing minimization step: 4081. Total energy = 5614.8799 kcal/mol (5611.3836 without restraints) Performing minimization step: 4082. Total energy = 5614.0144 kcal/mol (5610.5183 without restraints) Performing minimization step: 4083. Total energy = 5613.1495 kcal/mol (5609.6534 without restraints) Performing minimization step: 4084. Total energy = 5612.2848 kcal/mol (5608.7886 without restraints) Performing minimization step: 4085. Total energy = 5611.4212 kcal/mol (5607.9250 without restraints) Performing minimization step: 4086. Total energy = 5610.5582 kcal/mol (5607.0620 without restraints) Performing minimization step: 4087. Total energy = 5609.6959 kcal/mol (5606.1998 without restraints) Performing minimization step: 4088. Total energy = 5608.8343 kcal/mol (5605.3382 without restraints) Performing minimization step: 4089. Total energy = 5607.9733 kcal/mol (5604.4772 without restraints) Performing minimization step: 4090. Total energy = 5607.1130 kcal/mol (5603.6169 without restraints) Performing minimization step: 4091. Total energy = 5606.2540 kcal/mol (5602.7580 without restraints) Performing minimization step: 4092. Total energy = 5605.3953 kcal/mol (5601.8993 without restraints) Performing minimization step: 4093. Total energy = 5604.5369 kcal/mol (5601.0411 without restraints) Performing minimization step: 4094. Total energy = 5603.6793 kcal/mol (5600.1834 without restraints) Performing minimization step: 4095. Total energy = 5602.8224 kcal/mol (5599.3265 without restraints) Performing minimization step: 4096. Total energy = 5601.9665 kcal/mol (5598.4705 without restraints) Performing minimization step: 4097. Total energy = 5601.1114 kcal/mol (5597.6155 without restraints) Performing minimization step: 4098. Total energy = 5600.2571 kcal/mol (5596.7612 without restraints) Performing minimization step: 4099. Total energy = 5599.4031 kcal/mol (5595.9072 without restraints) Performing minimization step: 4100. Total energy = 5598.5496 kcal/mol (5595.0538 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 5597.6974 kcal/mol (5594.2015 without restraints) Performing minimization step: 4102. Total energy = 5596.8455 kcal/mol (5593.3497 without restraints) Performing minimization step: 4103. Total energy = 5595.9947 kcal/mol (5592.4991 without restraints) Performing minimization step: 4104. Total energy = 5595.1438 kcal/mol (5591.6479 without restraints) Performing minimization step: 4105. Total energy = 5594.2938 kcal/mol (5590.7981 without restraints) Performing minimization step: 4106. Total energy = 5593.4447 kcal/mol (5589.9490 without restraints) Performing minimization step: 4107. Total energy = 5592.5961 kcal/mol (5589.1003 without restraints) Performing minimization step: 4108. Total energy = 5591.7486 kcal/mol (5588.2529 without restraints) Performing minimization step: 4109. Total energy = 5590.9013 kcal/mol (5587.4056 without restraints) Performing minimization step: 4110. Total energy = 5590.0545 kcal/mol (5586.5589 without restraints) Performing minimization step: 4111. Total energy = 5589.2089 kcal/mol (5585.7134 without restraints) Performing minimization step: 4112. Total energy = 5588.3637 kcal/mol (5584.8681 without restraints) Performing minimization step: 4113. Total energy = 5587.5189 kcal/mol (5584.0233 without restraints) Performing minimization step: 4114. Total energy = 5586.6754 kcal/mol (5583.1797 without restraints) Performing minimization step: 4115. Total energy = 5585.8327 kcal/mol (5582.3371 without restraints) Performing minimization step: 4116. Total energy = 5584.9901 kcal/mol (5581.4946 without restraints) Performing minimization step: 4117. Total energy = 5584.1488 kcal/mol (5580.6533 without restraints) Performing minimization step: 4118. Total energy = 5583.3078 kcal/mol (5579.8122 without restraints) Performing minimization step: 4119. Total energy = 5582.4674 kcal/mol (5578.9719 without restraints) Performing minimization step: 4120. Total energy = 5581.6279 kcal/mol (5578.1323 without restraints) Performing minimization step: 4121. Total energy = 5580.7885 kcal/mol (5577.2930 without restraints) Performing minimization step: 4122. Total energy = 5579.9500 kcal/mol (5576.4545 without restraints) Performing minimization step: 4123. Total energy = 5579.1121 kcal/mol (5575.6166 without restraints) Performing minimization step: 4124. Total energy = 5578.2753 kcal/mol (5574.7798 without restraints) Performing minimization step: 4125. Total energy = 5577.4385 kcal/mol (5573.9429 without restraints) Performing minimization step: 4126. Total energy = 5576.6026 kcal/mol (5573.1071 without restraints) Performing minimization step: 4127. Total energy = 5575.7673 kcal/mol (5572.2718 without restraints) Performing minimization step: 4128. Total energy = 5574.9328 kcal/mol (5571.4373 without restraints) Performing minimization step: 4129. Total energy = 5574.0993 kcal/mol (5570.6039 without restraints) Performing minimization step: 4130. Total energy = 5573.2664 kcal/mol (5569.7709 without restraints) Performing minimization step: 4131. Total energy = 5572.4337 kcal/mol (5568.9382 without restraints) Performing minimization step: 4132. Total energy = 5571.6016 kcal/mol (5568.1062 without restraints) Performing minimization step: 4133. Total energy = 5570.7707 kcal/mol (5567.2752 without restraints) Performing minimization step: 4134. Total energy = 5569.9399 kcal/mol (5566.4446 without restraints) Performing minimization step: 4135. Total energy = 5569.1100 kcal/mol (5565.6145 without restraints) Performing minimization step: 4136. Total energy = 5568.2806 kcal/mol (5564.7851 without restraints) Performing minimization step: 4137. Total energy = 5567.4517 kcal/mol (5563.9561 without restraints) Performing minimization step: 4138. Total energy = 5566.6236 kcal/mol (5563.1282 without restraints) Performing minimization step: 4139. Total energy = 5565.7963 kcal/mol (5562.3009 without restraints) Performing minimization step: 4140. Total energy = 5564.9694 kcal/mol (5561.4739 without restraints) Performing minimization step: 4141. Total energy = 5564.1436 kcal/mol (5560.6481 without restraints) Performing minimization step: 4142. Total energy = 5563.3180 kcal/mol (5559.8226 without restraints) Performing minimization step: 4143. Total energy = 5562.4931 kcal/mol (5558.9977 without restraints) Performing minimization step: 4144. Total energy = 5561.6698 kcal/mol (5558.1743 without restraints) Performing minimization step: 4145. Total energy = 5560.8462 kcal/mol (5557.3508 without restraints) Performing minimization step: 4146. Total energy = 5560.0234 kcal/mol (5556.5280 without restraints) Performing minimization step: 4147. Total energy = 5559.2007 kcal/mol (5555.7052 without restraints) Performing minimization step: 4148. Total energy = 5558.3790 kcal/mol (5554.8835 without restraints) Performing minimization step: 4149. Total energy = 5557.5579 kcal/mol (5554.0623 without restraints) Performing minimization step: 4150. Total energy = 5556.7377 kcal/mol (5553.2423 without restraints) Performing minimization step: 4151. Total energy = 5555.9179 kcal/mol (5552.4224 without restraints) Performing minimization step: 4152. Total energy = 5555.0991 kcal/mol (5551.6036 without restraints) Performing minimization step: 4153. Total energy = 5554.2808 kcal/mol (5550.7853 without restraints) Performing minimization step: 4154. Total energy = 5553.4627 kcal/mol (5549.9672 without restraints) Performing minimization step: 4155. Total energy = 5552.6461 kcal/mol (5549.1506 without restraints) Performing minimization step: 4156. Total energy = 5551.8296 kcal/mol (5548.3341 without restraints) Performing minimization step: 4157. Total energy = 5551.0135 kcal/mol (5547.5180 without restraints) Performing minimization step: 4158. Total energy = 5550.1979 kcal/mol (5546.7023 without restraints) Performing minimization step: 4159. Total energy = 5549.3833 kcal/mol (5545.8877 without restraints) Performing minimization step: 4160. Total energy = 5548.5691 kcal/mol (5545.0736 without restraints) Performing minimization step: 4161. Total energy = 5547.7557 kcal/mol (5544.2602 without restraints) Performing minimization step: 4162. Total energy = 5546.9430 kcal/mol (5543.4475 without restraints) Performing minimization step: 4163. Total energy = 5546.1312 kcal/mol (5542.6356 without restraints) Performing minimization step: 4164. Total energy = 5545.3198 kcal/mol (5541.8242 without restraints) Performing minimization step: 4165. Total energy = 5544.5090 kcal/mol (5541.0134 without restraints) Performing minimization step: 4166. Total energy = 5543.6991 kcal/mol (5540.2035 without restraints) Performing minimization step: 4167. Total energy = 5542.8894 kcal/mol (5539.3938 without restraints) Performing minimization step: 4168. Total energy = 5542.0803 kcal/mol (5538.5848 without restraints) Performing minimization step: 4169. Total energy = 5541.2720 kcal/mol (5537.7763 without restraints) Performing minimization step: 4170. Total energy = 5540.4643 kcal/mol (5536.9688 without restraints) Performing minimization step: 4171. Total energy = 5539.6576 kcal/mol (5536.1618 without restraints) Performing minimization step: 4172. Total energy = 5538.8506 kcal/mol (5535.3549 without restraints) Performing minimization step: 4173. Total energy = 5538.0440 kcal/mol (5534.5483 without restraints) Performing minimization step: 4174. Total energy = 5537.2388 kcal/mol (5533.7432 without restraints) Performing minimization step: 4175. Total energy = 5536.4342 kcal/mol (5532.9385 without restraints) Performing minimization step: 4176. Total energy = 5535.6303 kcal/mol (5532.1346 without restraints) Performing minimization step: 4177. Total energy = 5534.8270 kcal/mol (5531.3313 without restraints) Performing minimization step: 4178. Total energy = 5534.0242 kcal/mol (5530.5285 without restraints) Performing minimization step: 4179. Total energy = 5533.2224 kcal/mol (5529.7266 without restraints) Performing minimization step: 4180. Total energy = 5532.4206 kcal/mol (5528.9248 without restraints) Performing minimization step: 4181. Total energy = 5531.6195 kcal/mol (5528.1237 without restraints) Performing minimization step: 4182. Total energy = 5530.8191 kcal/mol (5527.3233 without restraints) Performing minimization step: 4183. Total energy = 5530.0194 kcal/mol (5526.5237 without restraints) Performing minimization step: 4184. Total energy = 5529.2200 kcal/mol (5525.7241 without restraints) Performing minimization step: 4185. Total energy = 5528.4213 kcal/mol (5524.9254 without restraints) Performing minimization step: 4186. Total energy = 5527.6230 kcal/mol (5524.1271 without restraints) Performing minimization step: 4187. Total energy = 5526.8258 kcal/mol (5523.3298 without restraints) Performing minimization step: 4188. Total energy = 5526.0291 kcal/mol (5522.5331 without restraints) Performing minimization step: 4189. Total energy = 5525.2328 kcal/mol (5521.7369 without restraints) Performing minimization step: 4190. Total energy = 5524.4372 kcal/mol (5520.9411 without restraints) Performing minimization step: 4191. Total energy = 5523.6422 kcal/mol (5520.1464 without restraints) Performing minimization step: 4192. Total energy = 5522.8480 kcal/mol (5519.3520 without restraints) Performing minimization step: 4193. Total energy = 5522.0543 kcal/mol (5518.5582 without restraints) Performing minimization step: 4194. Total energy = 5521.2613 kcal/mol (5517.7652 without restraints) Performing minimization step: 4195. Total energy = 5520.4688 kcal/mol (5516.9727 without restraints) Performing minimization step: 4196. Total energy = 5519.6764 kcal/mol (5516.1803 without restraints) Performing minimization step: 4197. Total energy = 5518.8848 kcal/mol (5515.3886 without restraints) Performing minimization step: 4198. Total energy = 5518.0940 kcal/mol (5514.5980 without restraints) Performing minimization step: 4199. Total energy = 5517.3039 kcal/mol (5513.8078 without restraints) Performing minimization step: 4200. Total energy = 5516.5147 kcal/mol (5513.0186 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 5515.7254 kcal/mol (5512.2291 without restraints) Performing minimization step: 4202. Total energy = 5514.9369 kcal/mol (5511.4406 without restraints) Performing minimization step: 4203. Total energy = 5514.1489 kcal/mol (5510.6526 without restraints) Performing minimization step: 4204. Total energy = 5513.3617 kcal/mol (5509.8654 without restraints) Performing minimization step: 4205. Total energy = 5512.5750 kcal/mol (5509.0787 without restraints) Performing minimization step: 4206. Total energy = 5511.7892 kcal/mol (5508.2929 without restraints) Performing minimization step: 4207. Total energy = 5511.0035 kcal/mol (5507.5072 without restraints) Performing minimization step: 4208. Total energy = 5510.2186 kcal/mol (5506.7221 without restraints) Performing minimization step: 4209. Total energy = 5509.4343 kcal/mol (5505.9377 without restraints) Performing minimization step: 4210. Total energy = 5508.6511 kcal/mol (5505.1546 without restraints) Performing minimization step: 4211. Total energy = 5507.8679 kcal/mol (5504.3713 without restraints) Performing minimization step: 4212. Total energy = 5507.0851 kcal/mol (5503.5884 without restraints) Performing minimization step: 4213. Total energy = 5506.3028 kcal/mol (5502.8062 without restraints) Performing minimization step: 4214. Total energy = 5505.5215 kcal/mol (5502.0248 without restraints) Performing minimization step: 4215. Total energy = 5504.7409 kcal/mol (5501.2442 without restraints) Performing minimization step: 4216. Total energy = 5503.9609 kcal/mol (5500.4641 without restraints) Performing minimization step: 4217. Total energy = 5503.1807 kcal/mol (5499.6838 without restraints) Performing minimization step: 4218. Total energy = 5502.4021 kcal/mol (5498.9053 without restraints) Performing minimization step: 4219. Total energy = 5501.6235 kcal/mol (5498.1266 without restraints) Performing minimization step: 4220. Total energy = 5500.8456 kcal/mol (5497.3487 without restraints) Performing minimization step: 4221. Total energy = 5500.0681 kcal/mol (5496.5712 without restraints) Performing minimization step: 4222. Total energy = 5499.2915 kcal/mol (5495.7946 without restraints) Performing minimization step: 4223. Total energy = 5498.5151 kcal/mol (5495.0181 without restraints) Performing minimization step: 4224. Total energy = 5497.7393 kcal/mol (5494.2423 without restraints) Performing minimization step: 4225. Total energy = 5496.9642 kcal/mol (5493.4672 without restraints) Performing minimization step: 4226. Total energy = 5496.1896 kcal/mol (5492.6925 without restraints) Performing minimization step: 4227. Total energy = 5495.4158 kcal/mol (5491.9186 without restraints) Performing minimization step: 4228. Total energy = 5494.6423 kcal/mol (5491.1452 without restraints) Performing minimization step: 4229. Total energy = 5493.8697 kcal/mol (5490.3725 without restraints) Performing minimization step: 4230. Total energy = 5493.0974 kcal/mol (5489.6004 without restraints) Performing minimization step: 4231. Total energy = 5492.3259 kcal/mol (5488.8286 without restraints) Performing minimization step: 4232. Total energy = 5491.5548 kcal/mol (5488.0574 without restraints) Performing minimization step: 4233. Total energy = 5490.7840 kcal/mol (5487.2866 without restraints) Performing minimization step: 4234. Total energy = 5490.0139 kcal/mol (5486.5165 without restraints) Performing minimization step: 4235. Total energy = 5489.2447 kcal/mol (5485.7474 without restraints) Performing minimization step: 4236. Total energy = 5488.4760 kcal/mol (5484.9785 without restraints) Performing minimization step: 4237. Total energy = 5487.7081 kcal/mol (5484.2108 without restraints) Performing minimization step: 4238. Total energy = 5486.9407 kcal/mol (5483.4431 without restraints) Performing minimization step: 4239. Total energy = 5486.1737 kcal/mol (5482.6761 without restraints) Performing minimization step: 4240. Total energy = 5485.4072 kcal/mol (5481.9097 without restraints) Performing minimization step: 4241. Total energy = 5484.6422 kcal/mol (5481.1445 without restraints) Performing minimization step: 4242. Total energy = 5483.8777 kcal/mol (5480.3801 without restraints) Performing minimization step: 4243. Total energy = 5483.1129 kcal/mol (5479.6151 without restraints) Performing minimization step: 4244. Total energy = 5482.3486 kcal/mol (5478.8508 without restraints) Performing minimization step: 4245. Total energy = 5481.5851 kcal/mol (5478.0873 without restraints) Performing minimization step: 4246. Total energy = 5480.8216 kcal/mol (5477.3237 without restraints) Performing minimization step: 4247. Total energy = 5480.0588 kcal/mol (5476.5608 without restraints) Performing minimization step: 4248. Total energy = 5479.2969 kcal/mol (5475.7989 without restraints) Performing minimization step: 4249. Total energy = 5478.5352 kcal/mol (5475.0371 without restraints) Performing minimization step: 4250. Total energy = 5477.7740 kcal/mol (5474.2759 without restraints) Performing minimization step: 4251. Total energy = 5477.0133 kcal/mol (5473.5151 without restraints) Performing minimization step: 4252. Total energy = 5476.2533 kcal/mol (5472.7551 without restraints) Performing minimization step: 4253. Total energy = 5475.4942 kcal/mol (5471.9960 without restraints) Performing minimization step: 4254. Total energy = 5474.7352 kcal/mol (5471.2370 without restraints) Performing minimization step: 4255. Total energy = 5473.9769 kcal/mol (5470.4785 without restraints) Performing minimization step: 4256. Total energy = 5473.2191 kcal/mol (5469.7207 without restraints) Performing minimization step: 4257. Total energy = 5472.4618 kcal/mol (5468.9633 without restraints) Performing minimization step: 4258. Total energy = 5471.7059 kcal/mol (5468.2074 without restraints) Performing minimization step: 4259. Total energy = 5470.9503 kcal/mol (5467.4518 without restraints) Performing minimization step: 4260. Total energy = 5470.1949 kcal/mol (5466.6963 without restraints) Performing minimization step: 4261. Total energy = 5469.4398 kcal/mol (5465.9410 without restraints) Performing minimization step: 4262. Total energy = 5468.6852 kcal/mol (5465.1865 without restraints) Performing minimization step: 4263. Total energy = 5467.9314 kcal/mol (5464.4326 without restraints) Performing minimization step: 4264. Total energy = 5467.1781 kcal/mol (5463.6793 without restraints) Performing minimization step: 4265. Total energy = 5466.4254 kcal/mol (5462.9266 without restraints) Performing minimization step: 4266. Total energy = 5465.6727 kcal/mol (5462.1739 without restraints) Performing minimization step: 4267. Total energy = 5464.9208 kcal/mol (5461.4218 without restraints) Performing minimization step: 4268. Total energy = 5464.1695 kcal/mol (5460.6705 without restraints) Performing minimization step: 4269. Total energy = 5463.4193 kcal/mol (5459.9203 without restraints) Performing minimization step: 4270. Total energy = 5462.6692 kcal/mol (5459.1700 without restraints) Performing minimization step: 4271. Total energy = 5461.9198 kcal/mol (5458.4206 without restraints) Performing minimization step: 4272. Total energy = 5461.1707 kcal/mol (5457.6714 without restraints) Performing minimization step: 4273. Total energy = 5460.4221 kcal/mol (5456.9228 without restraints) Performing minimization step: 4274. Total energy = 5459.6745 kcal/mol (5456.1751 without restraints) Performing minimization step: 4275. Total energy = 5458.9273 kcal/mol (5455.4281 without restraints) Performing minimization step: 4276. Total energy = 5458.1808 kcal/mol (5454.6813 without restraints) Performing minimization step: 4277. Total energy = 5457.4352 kcal/mol (5453.9356 without restraints) Performing minimization step: 4278. Total energy = 5456.6895 kcal/mol (5453.1899 without restraints) Performing minimization step: 4279. Total energy = 5455.9444 kcal/mol (5452.4447 without restraints) Performing minimization step: 4280. Total energy = 5455.2006 kcal/mol (5451.7010 without restraints) Performing minimization step: 4281. Total energy = 5454.4564 kcal/mol (5450.9566 without restraints) Performing minimization step: 4282. Total energy = 5453.7131 kcal/mol (5450.2133 without restraints) Performing minimization step: 4283. Total energy = 5452.9702 kcal/mol (5449.4703 without restraints) Performing minimization step: 4284. Total energy = 5452.2275 kcal/mol (5448.7276 without restraints) Performing minimization step: 4285. Total energy = 5451.4858 kcal/mol (5447.9857 without restraints) Performing minimization step: 4286. Total energy = 5450.7444 kcal/mol (5447.2443 without restraints) Performing minimization step: 4287. Total energy = 5450.0039 kcal/mol (5446.5039 without restraints) Performing minimization step: 4288. Total energy = 5449.2636 kcal/mol (5445.7635 without restraints) Performing minimization step: 4289. Total energy = 5448.5236 kcal/mol (5445.0234 without restraints) Performing minimization step: 4290. Total energy = 5447.7843 kcal/mol (5444.2840 without restraints) Performing minimization step: 4291. Total energy = 5447.0452 kcal/mol (5443.5447 without restraints) Performing minimization step: 4292. Total energy = 5446.3071 kcal/mol (5442.8067 without restraints) Performing minimization step: 4293. Total energy = 5445.5691 kcal/mol (5442.0686 without restraints) Performing minimization step: 4294. Total energy = 5444.8323 kcal/mol (5441.3318 without restraints) Performing minimization step: 4295. Total energy = 5444.0958 kcal/mol (5440.5951 without restraints) Performing minimization step: 4296. Total energy = 5443.3599 kcal/mol (5439.8592 without restraints) Performing minimization step: 4297. Total energy = 5442.6241 kcal/mol (5439.1233 without restraints) Performing minimization step: 4298. Total energy = 5441.8886 kcal/mol (5438.3877 without restraints) Performing minimization step: 4299. Total energy = 5441.1538 kcal/mol (5437.6528 without restraints) Performing minimization step: 4300. Total energy = 5440.4200 kcal/mol (5436.9189 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 5439.6863 kcal/mol (5436.1852 without restraints) Performing minimization step: 4302. Total energy = 5438.9530 kcal/mol (5435.4519 without restraints) Performing minimization step: 4303. Total energy = 5438.2203 kcal/mol (5434.7191 without restraints) Performing minimization step: 4304. Total energy = 5437.4882 kcal/mol (5433.9869 without restraints) Performing minimization step: 4305. Total energy = 5436.7569 kcal/mol (5433.2556 without restraints) Performing minimization step: 4306. Total energy = 5436.0264 kcal/mol (5432.5250 without restraints) Performing minimization step: 4307. Total energy = 5435.2961 kcal/mol (5431.7946 without restraints) Performing minimization step: 4308. Total energy = 5434.5661 kcal/mol (5431.0645 without restraints) Performing minimization step: 4309. Total energy = 5433.8369 kcal/mol (5430.3354 without restraints) Performing minimization step: 4310. Total energy = 5433.1080 kcal/mol (5429.6062 without restraints) Performing minimization step: 4311. Total energy = 5432.3796 kcal/mol (5428.8778 without restraints) Performing minimization step: 4312. Total energy = 5431.6517 kcal/mol (5428.1499 without restraints) Performing minimization step: 4313. Total energy = 5430.9242 kcal/mol (5427.4223 without restraints) Performing minimization step: 4314. Total energy = 5430.1973 kcal/mol (5426.6953 without restraints) Performing minimization step: 4315. Total energy = 5429.4714 kcal/mol (5425.9693 without restraints) Performing minimization step: 4316. Total energy = 5428.7454 kcal/mol (5425.2433 without restraints) Performing minimization step: 4317. Total energy = 5428.0202 kcal/mol (5424.5179 without restraints) Performing minimization step: 4318. Total energy = 5427.2953 kcal/mol (5423.7930 without restraints) Performing minimization step: 4319. Total energy = 5426.5708 kcal/mol (5423.0684 without restraints) Performing minimization step: 4320. Total energy = 5425.8471 kcal/mol (5422.3446 without restraints) Performing minimization step: 4321. Total energy = 5425.1236 kcal/mol (5421.6210 without restraints) Performing minimization step: 4322. Total energy = 5424.4008 kcal/mol (5420.8981 without restraints) Performing minimization step: 4323. Total energy = 5423.6786 kcal/mol (5420.1760 without restraints) Performing minimization step: 4324. Total energy = 5422.9569 kcal/mol (5419.4541 without restraints) Performing minimization step: 4325. Total energy = 5422.2357 kcal/mol (5418.7328 without restraints) Performing minimization step: 4326. Total energy = 5421.5150 kcal/mol (5418.0121 without restraints) Performing minimization step: 4327. Total energy = 5420.7946 kcal/mol (5417.2916 without restraints) Performing minimization step: 4328. Total energy = 5420.0751 kcal/mol (5416.5721 without restraints) Performing minimization step: 4329. Total energy = 5419.3559 kcal/mol (5415.8527 without restraints) Performing minimization step: 4330. Total energy = 5418.6370 kcal/mol (5415.1337 without restraints) Performing minimization step: 4331. Total energy = 5417.9186 kcal/mol (5414.4153 without restraints) Performing minimization step: 4332. Total energy = 5417.2010 kcal/mol (5413.6976 without restraints) Performing minimization step: 4333. Total energy = 5416.4839 kcal/mol (5412.9805 without restraints) Performing minimization step: 4334. Total energy = 5415.7672 kcal/mol (5412.2637 without restraints) Performing minimization step: 4335. Total energy = 5415.0516 kcal/mol (5411.5479 without restraints) Performing minimization step: 4336. Total energy = 5414.3361 kcal/mol (5410.8323 without restraints) Performing minimization step: 4337. Total energy = 5413.6209 kcal/mol (5410.1170 without restraints) Performing minimization step: 4338. Total energy = 5412.9057 kcal/mol (5409.4018 without restraints) Performing minimization step: 4339. Total energy = 5412.1913 kcal/mol (5408.6873 without restraints) Performing minimization step: 4340. Total energy = 5411.4775 kcal/mol (5407.9734 without restraints) Performing minimization step: 4341. Total energy = 5410.7644 kcal/mol (5407.2602 without restraints) Performing minimization step: 4342. Total energy = 5410.0517 kcal/mol (5406.5474 without restraints) Performing minimization step: 4343. Total energy = 5409.3396 kcal/mol (5405.8354 without restraints) Performing minimization step: 4344. Total energy = 5408.6278 kcal/mol (5405.1234 without restraints) Performing minimization step: 4345. Total energy = 5407.9169 kcal/mol (5404.4124 without restraints) Performing minimization step: 4346. Total energy = 5407.2060 kcal/mol (5403.7014 without restraints) Performing minimization step: 4347. Total energy = 5406.4959 kcal/mol (5402.9913 without restraints) Performing minimization step: 4348. Total energy = 5405.7859 kcal/mol (5402.2811 without restraints) Performing minimization step: 4349. Total energy = 5405.0760 kcal/mol (5401.5711 without restraints) Performing minimization step: 4350. Total energy = 5404.3675 kcal/mol (5400.8627 without restraints) Performing minimization step: 4351. Total energy = 5403.6594 kcal/mol (5400.1544 without restraints) Performing minimization step: 4352. Total energy = 5402.9518 kcal/mol (5399.4467 without restraints) Performing minimization step: 4353. Total energy = 5402.2444 kcal/mol (5398.7391 without restraints) Performing minimization step: 4354. Total energy = 5401.5372 kcal/mol (5398.0319 without restraints) Performing minimization step: 4355. Total energy = 5400.8311 kcal/mol (5397.3257 without restraints) Performing minimization step: 4356. Total energy = 5400.1251 kcal/mol (5396.6196 without restraints) Performing minimization step: 4357. Total energy = 5399.4200 kcal/mol (5395.9144 without restraints) Performing minimization step: 4358. Total energy = 5398.7150 kcal/mol (5395.2093 without restraints) Performing minimization step: 4359. Total energy = 5398.0105 kcal/mol (5394.5047 without restraints) Performing minimization step: 4360. Total energy = 5397.3069 kcal/mol (5393.8010 without restraints) Performing minimization step: 4361. Total energy = 5396.6032 kcal/mol (5393.0974 without restraints) Performing minimization step: 4362. Total energy = 5395.9005 kcal/mol (5392.3945 without restraints) Performing minimization step: 4363. Total energy = 5395.1979 kcal/mol (5391.6917 without restraints) Performing minimization step: 4364. Total energy = 5394.4961 kcal/mol (5390.9901 without restraints) Performing minimization step: 4365. Total energy = 5393.7949 kcal/mol (5390.2885 without restraints) Performing minimization step: 4366. Total energy = 5393.0939 kcal/mol (5389.5875 without restraints) Performing minimization step: 4367. Total energy = 5392.3932 kcal/mol (5388.8866 without restraints) Performing minimization step: 4368. Total energy = 5391.6932 kcal/mol (5388.1865 without restraints) Performing minimization step: 4369. Total energy = 5390.9935 kcal/mol (5387.4867 without restraints) Performing minimization step: 4370. Total energy = 5390.2945 kcal/mol (5386.7878 without restraints) Performing minimization step: 4371. Total energy = 5389.5957 kcal/mol (5386.0887 without restraints) Performing minimization step: 4372. Total energy = 5388.8974 kcal/mol (5385.3904 without restraints) Performing minimization step: 4373. Total energy = 5388.1998 kcal/mol (5384.6927 without restraints) Performing minimization step: 4374. Total energy = 5387.5025 kcal/mol (5383.9953 without restraints) Performing minimization step: 4375. Total energy = 5386.8059 kcal/mol (5383.2985 without restraints) Performing minimization step: 4376. Total energy = 5386.1097 kcal/mol (5382.6023 without restraints) Performing minimization step: 4377. Total energy = 5385.4143 kcal/mol (5381.9070 without restraints) Performing minimization step: 4378. Total energy = 5384.7194 kcal/mol (5381.2118 without restraints) Performing minimization step: 4379. Total energy = 5384.0249 kcal/mol (5380.5172 without restraints) Performing minimization step: 4380. Total energy = 5383.3304 kcal/mol (5379.8226 without restraints) Performing minimization step: 4381. Total energy = 5382.6369 kcal/mol (5379.1289 without restraints) Performing minimization step: 4382. Total energy = 5381.9435 kcal/mol (5378.4354 without restraints) Performing minimization step: 4383. Total energy = 5381.2506 kcal/mol (5377.7425 without restraints) Performing minimization step: 4384. Total energy = 5380.5581 kcal/mol (5377.0498 without restraints) Performing minimization step: 4385. Total energy = 5379.8662 kcal/mol (5376.3582 without restraints) Performing minimization step: 4386. Total energy = 5379.1745 kcal/mol (5375.6662 without restraints) Performing minimization step: 4387. Total energy = 5378.4839 kcal/mol (5374.9755 without restraints) Performing minimization step: 4388. Total energy = 5377.7937 kcal/mol (5374.2851 without restraints) Performing minimization step: 4389. Total energy = 5377.1034 kcal/mol (5373.5945 without restraints) Performing minimization step: 4390. Total energy = 5376.4135 kcal/mol (5372.9047 without restraints) Performing minimization step: 4391. Total energy = 5375.7242 kcal/mol (5372.2152 without restraints) Performing minimization step: 4392. Total energy = 5375.0353 kcal/mol (5371.5265 without restraints) Performing minimization step: 4393. Total energy = 5374.3475 kcal/mol (5370.8382 without restraints) Performing minimization step: 4394. Total energy = 5373.6598 kcal/mol (5370.1507 without restraints) Performing minimization step: 4395. Total energy = 5372.9724 kcal/mol (5369.4630 without restraints) Performing minimization step: 4396. Total energy = 5372.2853 kcal/mol (5368.7757 without restraints) Performing minimization step: 4397. Total energy = 5371.5986 kcal/mol (5368.0890 without restraints) Performing minimization step: 4398. Total energy = 5370.9124 kcal/mol (5367.4027 without restraints) Performing minimization step: 4399. Total energy = 5370.2270 kcal/mol (5366.7172 without restraints) Performing minimization step: 4400. Total energy = 5369.5419 kcal/mol (5366.0320 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 5368.8577 kcal/mol (5365.3478 without restraints) Performing minimization step: 4402. Total energy = 5368.1737 kcal/mol (5364.6635 without restraints) Performing minimization step: 4403. Total energy = 5367.4902 kcal/mol (5363.9799 without restraints) Performing minimization step: 4404. Total energy = 5366.8072 kcal/mol (5363.2970 without restraints) Performing minimization step: 4405. Total energy = 5366.1250 kcal/mol (5362.6144 without restraints) Performing minimization step: 4406. Total energy = 5365.4427 kcal/mol (5361.9321 without restraints) Performing minimization step: 4407. Total energy = 5364.7611 kcal/mol (5361.2505 without restraints) Performing minimization step: 4408. Total energy = 5364.0795 kcal/mol (5360.5687 without restraints) Performing minimization step: 4409. Total energy = 5363.3986 kcal/mol (5359.8876 without restraints) Performing minimization step: 4410. Total energy = 5362.7181 kcal/mol (5359.2070 without restraints) Performing minimization step: 4411. Total energy = 5362.0381 kcal/mol (5358.5269 without restraints) Performing minimization step: 4412. Total energy = 5361.3586 kcal/mol (5357.8475 without restraints) Performing minimization step: 4413. Total energy = 5360.6798 kcal/mol (5357.1685 without restraints) Performing minimization step: 4414. Total energy = 5360.0014 kcal/mol (5356.4901 without restraints) Performing minimization step: 4415. Total energy = 5359.3233 kcal/mol (5355.8117 without restraints) Performing minimization step: 4416. Total energy = 5358.6457 kcal/mol (5355.1339 without restraints) Performing minimization step: 4417. Total energy = 5357.9684 kcal/mol (5354.4566 without restraints) Performing minimization step: 4418. Total energy = 5357.2918 kcal/mol (5353.7799 without restraints) Performing minimization step: 4419. Total energy = 5356.6156 kcal/mol (5353.1035 without restraints) Performing minimization step: 4420. Total energy = 5355.9399 kcal/mol (5352.4277 without restraints) Performing minimization step: 4421. Total energy = 5355.2647 kcal/mol (5351.7524 without restraints) Performing minimization step: 4422. Total energy = 5354.5897 kcal/mol (5351.0773 without restraints) Performing minimization step: 4423. Total energy = 5353.9152 kcal/mol (5350.4027 without restraints) Performing minimization step: 4424. Total energy = 5353.2414 kcal/mol (5349.7288 without restraints) Performing minimization step: 4425. Total energy = 5352.5684 kcal/mol (5349.0556 without restraints) Performing minimization step: 4426. Total energy = 5351.8953 kcal/mol (5348.3823 without restraints) Performing minimization step: 4427. Total energy = 5351.2227 kcal/mol (5347.7097 without restraints) Performing minimization step: 4428. Total energy = 5350.5500 kcal/mol (5347.0369 without restraints) Performing minimization step: 4429. Total energy = 5349.8782 kcal/mol (5346.3650 without restraints) Performing minimization step: 4430. Total energy = 5349.2072 kcal/mol (5345.6939 without restraints) Performing minimization step: 4431. Total energy = 5348.5367 kcal/mol (5345.0232 without restraints) Performing minimization step: 4432. Total energy = 5347.8671 kcal/mol (5344.3537 without restraints) Performing minimization step: 4433. Total energy = 5347.1983 kcal/mol (5343.6847 without restraints) Performing minimization step: 4434. Total energy = 5346.5291 kcal/mol (5343.0154 without restraints) Performing minimization step: 4435. Total energy = 5345.8603 kcal/mol (5342.3464 without restraints) Performing minimization step: 4436. Total energy = 5345.1917 kcal/mol (5341.6778 without restraints) Performing minimization step: 4437. Total energy = 5344.5236 kcal/mol (5341.0096 without restraints) Performing minimization step: 4438. Total energy = 5343.8560 kcal/mol (5340.3416 without restraints) Performing minimization step: 4439. Total energy = 5343.1886 kcal/mol (5339.6741 without restraints) Performing minimization step: 4440. Total energy = 5342.5222 kcal/mol (5339.0076 without restraints) Performing minimization step: 4441. Total energy = 5341.8555 kcal/mol (5338.3407 without restraints) Performing minimization step: 4442. Total energy = 5341.1894 kcal/mol (5337.6745 without restraints) Performing minimization step: 4443. Total energy = 5340.5237 kcal/mol (5337.0087 without restraints) Performing minimization step: 4444. Total energy = 5339.8585 kcal/mol (5336.3434 without restraints) Performing minimization step: 4445. Total energy = 5339.1938 kcal/mol (5335.6786 without restraints) Performing minimization step: 4446. Total energy = 5338.5295 kcal/mol (5335.0142 without restraints) Performing minimization step: 4447. Total energy = 5337.8658 kcal/mol (5334.3503 without restraints) Performing minimization step: 4448. Total energy = 5337.2025 kcal/mol (5333.6868 without restraints) Performing minimization step: 4449. Total energy = 5336.5395 kcal/mol (5333.0238 without restraints) Performing minimization step: 4450. Total energy = 5335.8769 kcal/mol (5332.3611 without restraints) Performing minimization step: 4451. Total energy = 5335.2147 kcal/mol (5331.6987 without restraints) Performing minimization step: 4452. Total energy = 5334.5534 kcal/mol (5331.0374 without restraints) Performing minimization step: 4453. Total energy = 5333.8925 kcal/mol (5330.3763 without restraints) Performing minimization step: 4454. Total energy = 5333.2319 kcal/mol (5329.7156 without restraints) Performing minimization step: 4455. Total energy = 5332.5721 kcal/mol (5329.0557 without restraints) Performing minimization step: 4456. Total energy = 5331.9126 kcal/mol (5328.3961 without restraints) Performing minimization step: 4457. Total energy = 5331.2537 kcal/mol (5327.7371 without restraints) Performing minimization step: 4458. Total energy = 5330.5952 kcal/mol (5327.0787 without restraints) Performing minimization step: 4459. Total energy = 5329.9370 kcal/mol (5326.4200 without restraints) Performing minimization step: 4460. Total energy = 5329.2790 kcal/mol (5325.7619 without restraints) Performing minimization step: 4461. Total energy = 5328.6215 kcal/mol (5325.1042 without restraints) Performing minimization step: 4462. Total energy = 5327.9643 kcal/mol (5324.4470 without restraints) Performing minimization step: 4463. Total energy = 5327.3076 kcal/mol (5323.7900 without restraints) Performing minimization step: 4464. Total energy = 5326.6511 kcal/mol (5323.1334 without restraints) Performing minimization step: 4465. Total energy = 5325.9952 kcal/mol (5322.4774 without restraints) Performing minimization step: 4466. Total energy = 5325.3399 kcal/mol (5321.8219 without restraints) Performing minimization step: 4467. Total energy = 5324.6850 kcal/mol (5321.1670 without restraints) Performing minimization step: 4468. Total energy = 5324.0307 kcal/mol (5320.5126 without restraints) Performing minimization step: 4469. Total energy = 5323.3766 kcal/mol (5319.8583 without restraints) Performing minimization step: 4470. Total energy = 5322.7230 kcal/mol (5319.2046 without restraints) Performing minimization step: 4471. Total energy = 5322.0697 kcal/mol (5318.5510 without restraints) Performing minimization step: 4472. Total energy = 5321.4166 kcal/mol (5317.8979 without restraints) Performing minimization step: 4473. Total energy = 5320.7643 kcal/mol (5317.2454 without restraints) Performing minimization step: 4474. Total energy = 5320.1121 kcal/mol (5316.5931 without restraints) Performing minimization step: 4475. Total energy = 5319.4606 kcal/mol (5315.9414 without restraints) Performing minimization step: 4476. Total energy = 5318.8093 kcal/mol (5315.2900 without restraints) Performing minimization step: 4477. Total energy = 5318.1588 kcal/mol (5314.6394 without restraints) Performing minimization step: 4478. Total energy = 5317.5087 kcal/mol (5313.9892 without restraints) Performing minimization step: 4479. Total energy = 5316.8590 kcal/mol (5313.3393 without restraints) Performing minimization step: 4480. Total energy = 5316.2092 kcal/mol (5312.6894 without restraints) Performing minimization step: 4481. Total energy = 5315.5597 kcal/mol (5312.0396 without restraints) Performing minimization step: 4482. Total energy = 5314.9111 kcal/mol (5311.3910 without restraints) Performing minimization step: 4483. Total energy = 5314.2631 kcal/mol (5310.7428 without restraints) Performing minimization step: 4484. Total energy = 5313.6151 kcal/mol (5310.0947 without restraints) Performing minimization step: 4485. Total energy = 5312.9680 kcal/mol (5309.4474 without restraints) Performing minimization step: 4486. Total energy = 5312.3210 kcal/mol (5308.8004 without restraints) Performing minimization step: 4487. Total energy = 5311.6746 kcal/mol (5308.1537 without restraints) Performing minimization step: 4488. Total energy = 5311.0286 kcal/mol (5307.5076 without restraints) Performing minimization step: 4489. Total energy = 5310.3830 kcal/mol (5306.8618 without restraints) Performing minimization step: 4490. Total energy = 5309.7378 kcal/mol (5306.2166 without restraints) Performing minimization step: 4491. Total energy = 5309.0930 kcal/mol (5305.5715 without restraints) Performing minimization step: 4492. Total energy = 5308.4486 kcal/mol (5304.9270 without restraints) Performing minimization step: 4493. Total energy = 5307.8045 kcal/mol (5304.2828 without restraints) Performing minimization step: 4494. Total energy = 5307.1615 kcal/mol (5303.6396 without restraints) Performing minimization step: 4495. Total energy = 5306.5184 kcal/mol (5302.9964 without restraints) Performing minimization step: 4496. Total energy = 5305.8757 kcal/mol (5302.3536 without restraints) Performing minimization step: 4497. Total energy = 5305.2329 kcal/mol (5301.7106 without restraints) Performing minimization step: 4498. Total energy = 5304.5911 kcal/mol (5301.0687 without restraints) Performing minimization step: 4499. Total energy = 5303.9497 kcal/mol (5300.4271 without restraints) Performing minimization step: 4500. Total energy = 5303.3085 kcal/mol (5299.7858 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 5302.6678 kcal/mol (5299.1449 without restraints) Performing minimization step: 4502. Total energy = 5302.0275 kcal/mol (5298.5045 without restraints) Performing minimization step: 4503. Total energy = 5301.3875 kcal/mol (5297.8643 without restraints) Performing minimization step: 4504. Total energy = 5300.7480 kcal/mol (5297.2247 without restraints) Performing minimization step: 4505. Total energy = 5300.1093 kcal/mol (5296.5858 without restraints) Performing minimization step: 4506. Total energy = 5299.4706 kcal/mol (5295.9469 without restraints) Performing minimization step: 4507. Total energy = 5298.8323 kcal/mol (5295.3086 without restraints) Performing minimization step: 4508. Total energy = 5298.1947 kcal/mol (5294.6709 without restraints) Performing minimization step: 4509. Total energy = 5297.5575 kcal/mol (5294.0334 without restraints) Performing minimization step: 4510. Total energy = 5296.9205 kcal/mol (5293.3964 without restraints) Performing minimization step: 4511. Total energy = 5296.2846 kcal/mol (5292.7602 without restraints) Performing minimization step: 4512. Total energy = 5295.6483 kcal/mol (5292.1238 without restraints) Performing minimization step: 4513. Total energy = 5295.0130 kcal/mol (5291.4884 without restraints) Performing minimization step: 4514. Total energy = 5294.3776 kcal/mol (5290.8528 without restraints) Performing minimization step: 4515. Total energy = 5293.7429 kcal/mol (5290.2180 without restraints) Performing minimization step: 4516. Total energy = 5293.1085 kcal/mol (5289.5833 without restraints) Performing minimization step: 4517. Total energy = 5292.4744 kcal/mol (5288.9492 without restraints) Performing minimization step: 4518. Total energy = 5291.8406 kcal/mol (5288.3152 without restraints) Performing minimization step: 4519. Total energy = 5291.2077 kcal/mol (5287.6822 without restraints) Performing minimization step: 4520. Total energy = 5290.5753 kcal/mol (5287.0498 without restraints) Performing minimization step: 4521. Total energy = 5289.9430 kcal/mol (5286.4171 without restraints) Performing minimization step: 4522. Total energy = 5289.3113 kcal/mol (5285.7853 without restraints) Performing minimization step: 4523. Total energy = 5288.6796 kcal/mol (5285.1534 without restraints) Performing minimization step: 4524. Total energy = 5288.0484 kcal/mol (5284.5220 without restraints) Performing minimization step: 4525. Total energy = 5287.4171 kcal/mol (5283.8905 without restraints) Performing minimization step: 4526. Total energy = 5286.7862 kcal/mol (5283.2596 without restraints) Performing minimization step: 4527. Total energy = 5286.1559 kcal/mol (5282.6291 without restraints) Performing minimization step: 4528. Total energy = 5285.5264 kcal/mol (5281.9994 without restraints) Performing minimization step: 4529. Total energy = 5284.8968 kcal/mol (5281.3697 without restraints) Performing minimization step: 4530. Total energy = 5284.2682 kcal/mol (5280.7410 without restraints) Performing minimization step: 4531. Total energy = 5283.6399 kcal/mol (5280.1125 without restraints) Performing minimization step: 4532. Total energy = 5283.0118 kcal/mol (5279.4841 without restraints) Performing minimization step: 4533. Total energy = 5282.3845 kcal/mol (5278.8567 without restraints) Performing minimization step: 4534. Total energy = 5281.7572 kcal/mol (5278.2292 without restraints) Performing minimization step: 4535. Total energy = 5281.1302 kcal/mol (5277.6021 without restraints) Performing minimization step: 4536. Total energy = 5280.5039 kcal/mol (5276.9759 without restraints) Performing minimization step: 4537. Total energy = 5279.8780 kcal/mol (5276.3497 without restraints) Performing minimization step: 4538. Total energy = 5279.2526 kcal/mol (5275.7241 without restraints) Performing minimization step: 4539. Total energy = 5278.6274 kcal/mol (5275.0987 without restraints) Performing minimization step: 4540. Total energy = 5278.0025 kcal/mol (5274.4736 without restraints) Performing minimization step: 4541. Total energy = 5277.3787 kcal/mol (5273.8497 without restraints) Performing minimization step: 4542. Total energy = 5276.7546 kcal/mol (5273.2254 without restraints) Performing minimization step: 4543. Total energy = 5276.1304 kcal/mol (5272.6011 without restraints) Performing minimization step: 4544. Total energy = 5275.5073 kcal/mol (5271.9776 without restraints) Performing minimization step: 4545. Total energy = 5274.8844 kcal/mol (5271.3547 without restraints) Performing minimization step: 4546. Total energy = 5274.2617 kcal/mol (5270.7318 without restraints) Performing minimization step: 4547. Total energy = 5273.6398 kcal/mol (5270.1098 without restraints) Performing minimization step: 4548. Total energy = 5273.0182 kcal/mol (5269.4880 without restraints) Performing minimization step: 4549. Total energy = 5272.3968 kcal/mol (5268.8664 without restraints) Performing minimization step: 4550. Total energy = 5271.7753 kcal/mol (5268.2448 without restraints) Performing minimization step: 4551. Total energy = 5271.1548 kcal/mol (5267.6242 without restraints) Performing minimization step: 4552. Total energy = 5270.5346 kcal/mol (5267.0037 without restraints) Performing minimization step: 4553. Total energy = 5269.9146 kcal/mol (5266.3836 without restraints) Performing minimization step: 4554. Total energy = 5269.2951 kcal/mol (5265.7639 without restraints) Performing minimization step: 4555. Total energy = 5268.6762 kcal/mol (5265.1450 without restraints) Performing minimization step: 4556. Total energy = 5268.0580 kcal/mol (5264.5266 without restraints) Performing minimization step: 4557. Total energy = 5267.4402 kcal/mol (5263.9085 without restraints) Performing minimization step: 4558. Total energy = 5266.8226 kcal/mol (5263.2908 without restraints) Performing minimization step: 4559. Total energy = 5266.2053 kcal/mol (5262.6733 without restraints) Performing minimization step: 4560. Total energy = 5265.5882 kcal/mol (5262.0561 without restraints) Performing minimization step: 4561. Total energy = 5264.9714 kcal/mol (5261.4391 without restraints) Performing minimization step: 4562. Total energy = 5264.3550 kcal/mol (5260.8225 without restraints) Performing minimization step: 4563. Total energy = 5263.7397 kcal/mol (5260.2072 without restraints) Performing minimization step: 4564. Total energy = 5263.1243 kcal/mol (5259.5914 without restraints) Performing minimization step: 4565. Total energy = 5262.5090 kcal/mol (5258.9760 without restraints) Performing minimization step: 4566. Total energy = 5261.8942 kcal/mol (5258.3610 without restraints) Performing minimization step: 4567. Total energy = 5261.2803 kcal/mol (5257.7469 without restraints) Performing minimization step: 4568. Total energy = 5260.6664 kcal/mol (5257.1329 without restraints) Performing minimization step: 4569. Total energy = 5260.0526 kcal/mol (5256.5189 without restraints) Performing minimization step: 4570. Total energy = 5259.4393 kcal/mol (5255.9054 without restraints) Performing minimization step: 4571. Total energy = 5258.8268 kcal/mol (5255.2929 without restraints) Performing minimization step: 4572. Total energy = 5258.2146 kcal/mol (5254.6802 without restraints) Performing minimization step: 4573. Total energy = 5257.6025 kcal/mol (5254.0681 without restraints) Performing minimization step: 4574. Total energy = 5256.9909 kcal/mol (5253.4563 without restraints) Performing minimization step: 4575. Total energy = 5256.3797 kcal/mol (5252.8450 without restraints) Performing minimization step: 4576. Total energy = 5255.7687 kcal/mol (5252.2337 without restraints) Performing minimization step: 4577. Total energy = 5255.1585 kcal/mol (5251.6234 without restraints) Performing minimization step: 4578. Total energy = 5254.5479 kcal/mol (5251.0127 without restraints) Performing minimization step: 4579. Total energy = 5253.9380 kcal/mol (5250.4026 without restraints) Performing minimization step: 4580. Total energy = 5253.3292 kcal/mol (5249.7935 without restraints) Performing minimization step: 4581. Total energy = 5252.7201 kcal/mol (5249.1844 without restraints) Performing minimization step: 4582. Total energy = 5252.1114 kcal/mol (5248.5754 without restraints) Performing minimization step: 4583. Total energy = 5251.5032 kcal/mol (5247.9672 without restraints) Performing minimization step: 4584. Total energy = 5250.8955 kcal/mol (5247.3592 without restraints) Performing minimization step: 4585. Total energy = 5250.2879 kcal/mol (5246.7514 without restraints) Performing minimization step: 4586. Total energy = 5249.6810 kcal/mol (5246.1444 without restraints) Performing minimization step: 4587. Total energy = 5249.0742 kcal/mol (5245.5375 without restraints) Performing minimization step: 4588. Total energy = 5248.4680 kcal/mol (5244.9309 without restraints) Performing minimization step: 4589. Total energy = 5247.8617 kcal/mol (5244.3245 without restraints) Performing minimization step: 4590. Total energy = 5247.2566 kcal/mol (5243.7192 without restraints) Performing minimization step: 4591. Total energy = 5246.6512 kcal/mol (5243.1137 without restraints) Performing minimization step: 4592. Total energy = 5246.0462 kcal/mol (5242.5085 without restraints) Performing minimization step: 4593. Total energy = 5245.4418 kcal/mol (5241.9039 without restraints) Performing minimization step: 4594. Total energy = 5244.8374 kcal/mol (5241.2993 without restraints) Performing minimization step: 4595. Total energy = 5244.2339 kcal/mol (5240.6956 without restraints) Performing minimization step: 4596. Total energy = 5243.6308 kcal/mol (5240.0923 without restraints) Performing minimization step: 4597. Total energy = 5243.0278 kcal/mol (5239.4891 without restraints) Performing minimization step: 4598. Total energy = 5242.4253 kcal/mol (5238.8866 without restraints) Performing minimization step: 4599. Total energy = 5241.8234 kcal/mol (5238.2844 without restraints) Performing minimization step: 4600. Total energy = 5241.2213 kcal/mol (5237.6821 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 5240.6200 kcal/mol (5237.0807 without restraints) Performing minimization step: 4602. Total energy = 5240.0190 kcal/mol (5236.4794 without restraints) Performing minimization step: 4603. Total energy = 5239.4182 kcal/mol (5235.8785 without restraints) Performing minimization step: 4604. Total energy = 5238.8176 kcal/mol (5235.2777 without restraints) Performing minimization step: 4605. Total energy = 5238.2173 kcal/mol (5234.6772 without restraints) Performing minimization step: 4606. Total energy = 5237.6173 kcal/mol (5234.0771 without restraints) Performing minimization step: 4607. Total energy = 5237.0179 kcal/mol (5233.4774 without restraints) Performing minimization step: 4608. Total energy = 5236.4189 kcal/mol (5232.8783 without restraints) Performing minimization step: 4609. Total energy = 5235.8201 kcal/mol (5232.2793 without restraints) Performing minimization step: 4610. Total energy = 5235.2219 kcal/mol (5231.6809 without restraints) Performing minimization step: 4611. Total energy = 5234.6239 kcal/mol (5231.0827 without restraints) Performing minimization step: 4612. Total energy = 5234.0264 kcal/mol (5230.4851 without restraints) Performing minimization step: 4613. Total energy = 5233.4293 kcal/mol (5229.8877 without restraints) Performing minimization step: 4614. Total energy = 5232.8323 kcal/mol (5229.2905 without restraints) Performing minimization step: 4615. Total energy = 5232.2355 kcal/mol (5228.6936 without restraints) Performing minimization step: 4616. Total energy = 5231.6395 kcal/mol (5228.0974 without restraints) Performing minimization step: 4617. Total energy = 5231.0437 kcal/mol (5227.5015 without restraints) Performing minimization step: 4618. Total energy = 5230.4485 kcal/mol (5226.9060 without restraints) Performing minimization step: 4619. Total energy = 5229.8537 kcal/mol (5226.3109 without restraints) Performing minimization step: 4620. Total energy = 5229.2589 kcal/mol (5225.7160 without restraints) Performing minimization step: 4621. Total energy = 5228.6645 kcal/mol (5225.1216 without restraints) Performing minimization step: 4622. Total energy = 5228.0705 kcal/mol (5224.5272 without restraints) Performing minimization step: 4623. Total energy = 5227.4770 kcal/mol (5223.9337 without restraints) Performing minimization step: 4624. Total energy = 5226.8844 kcal/mol (5223.3408 without restraints) Performing minimization step: 4625. Total energy = 5226.2914 kcal/mol (5222.7476 without restraints) Performing minimization step: 4626. Total energy = 5225.6989 kcal/mol (5222.1551 without restraints) Performing minimization step: 4627. Total energy = 5225.1069 kcal/mol (5221.5629 without restraints) Performing minimization step: 4628. Total energy = 5224.5151 kcal/mol (5220.9707 without restraints) Performing minimization step: 4629. Total energy = 5223.9234 kcal/mol (5220.3789 without restraints) Performing minimization step: 4630. Total energy = 5223.3321 kcal/mol (5219.7874 without restraints) Performing minimization step: 4631. Total energy = 5222.7417 kcal/mol (5219.1970 without restraints) Performing minimization step: 4632. Total energy = 5222.1521 kcal/mol (5218.6070 without restraints) Performing minimization step: 4633. Total energy = 5221.5618 kcal/mol (5218.0165 without restraints) Performing minimization step: 4634. Total energy = 5220.9720 kcal/mol (5217.4264 without restraints) Performing minimization step: 4635. Total energy = 5220.3826 kcal/mol (5216.8369 without restraints) Performing minimization step: 4636. Total energy = 5219.7935 kcal/mol (5216.2477 without restraints) Performing minimization step: 4637. Total energy = 5219.2048 kcal/mol (5215.6587 without restraints) Performing minimization step: 4638. Total energy = 5218.6163 kcal/mol (5215.0700 without restraints) Performing minimization step: 4639. Total energy = 5218.0283 kcal/mol (5214.4818 without restraints) Performing minimization step: 4640. Total energy = 5217.4410 kcal/mol (5213.8943 without restraints) Performing minimization step: 4641. Total energy = 5216.8536 kcal/mol (5213.3067 without restraints) Performing minimization step: 4642. Total energy = 5216.2667 kcal/mol (5212.7196 without restraints) Performing minimization step: 4643. Total energy = 5215.6801 kcal/mol (5212.1328 without restraints) Performing minimization step: 4644. Total energy = 5215.0936 kcal/mol (5211.5462 without restraints) Performing minimization step: 4645. Total energy = 5214.5083 kcal/mol (5210.9606 without restraints) Performing minimization step: 4646. Total energy = 5213.9226 kcal/mol (5210.3748 without restraints) Performing minimization step: 4647. Total energy = 5213.3374 kcal/mol (5209.7894 without restraints) Performing minimization step: 4648. Total energy = 5212.7524 kcal/mol (5209.2042 without restraints) Performing minimization step: 4649. Total energy = 5212.1677 kcal/mol (5208.6192 without restraints) Performing minimization step: 4650. Total energy = 5211.5833 kcal/mol (5208.0346 without restraints) Performing minimization step: 4651. Total energy = 5210.9999 kcal/mol (5207.4513 without restraints) Performing minimization step: 4652. Total energy = 5210.4165 kcal/mol (5206.8675 without restraints) Performing minimization step: 4653. Total energy = 5209.8336 kcal/mol (5206.2848 without restraints) Performing minimization step: 4654. Total energy = 5209.2510 kcal/mol (5205.7016 without restraints) Performing minimization step: 4655. Total energy = 5208.6686 kcal/mol (5205.1190 without restraints) Performing minimization step: 4656. Total energy = 5208.0867 kcal/mol (5204.5369 without restraints) Performing minimization step: 4657. Total energy = 5207.5049 kcal/mol (5203.9550 without restraints) Performing minimization step: 4658. Total energy = 5206.9237 kcal/mol (5203.3735 without restraints) Performing minimization step: 4659. Total energy = 5206.3424 kcal/mol (5202.7920 without restraints) Performing minimization step: 4660. Total energy = 5205.7617 kcal/mol (5202.2111 without restraints) Performing minimization step: 4661. Total energy = 5205.1811 kcal/mol (5201.6302 without restraints) Performing minimization step: 4662. Total energy = 5204.6019 kcal/mol (5201.0509 without restraints) Performing minimization step: 4663. Total energy = 5204.0218 kcal/mol (5200.4706 without restraints) Performing minimization step: 4664. Total energy = 5203.4427 kcal/mol (5199.8912 without restraints) Performing minimization step: 4665. Total energy = 5202.8635 kcal/mol (5199.3119 without restraints) Performing minimization step: 4666. Total energy = 5202.2849 kcal/mol (5198.7331 without restraints) Performing minimization step: 4667. Total energy = 5201.7065 kcal/mol (5198.1546 without restraints) Performing minimization step: 4668. Total energy = 5201.1284 kcal/mol (5197.5762 without restraints) Performing minimization step: 4669. Total energy = 5200.5505 kcal/mol (5196.9981 without restraints) Performing minimization step: 4670. Total energy = 5199.9730 kcal/mol (5196.4203 without restraints) Performing minimization step: 4671. Total energy = 5199.3960 kcal/mol (5195.8432 without restraints) Performing minimization step: 4672. Total energy = 5198.8191 kcal/mol (5195.2662 without restraints) Performing minimization step: 4673. Total energy = 5198.2430 kcal/mol (5194.6898 without restraints) Performing minimization step: 4674. Total energy = 5197.6667 kcal/mol (5194.1133 without restraints) Performing minimization step: 4675. Total energy = 5197.0909 kcal/mol (5193.5373 without restraints) Performing minimization step: 4676. Total energy = 5196.5157 kcal/mol (5192.9618 without restraints) Performing minimization step: 4677. Total energy = 5195.9403 kcal/mol (5192.3861 without restraints) Performing minimization step: 4678. Total energy = 5195.3652 kcal/mol (5191.8109 without restraints) Performing minimization step: 4679. Total energy = 5194.7903 kcal/mol (5191.2358 without restraints) Performing minimization step: 4680. Total energy = 5194.2161 kcal/mol (5190.6615 without restraints) Performing minimization step: 4681. Total energy = 5193.6421 kcal/mol (5190.0871 without restraints) Performing minimization step: 4682. Total energy = 5193.0683 kcal/mol (5189.5132 without restraints) Performing minimization step: 4683. Total energy = 5192.4952 kcal/mol (5188.9400 without restraints) Performing minimization step: 4684. Total energy = 5191.9225 kcal/mol (5188.3670 without restraints) Performing minimization step: 4685. Total energy = 5191.3500 kcal/mol (5187.7942 without restraints) Performing minimization step: 4686. Total energy = 5190.7776 kcal/mol (5187.2217 without restraints) Performing minimization step: 4687. Total energy = 5190.2055 kcal/mol (5186.6494 without restraints) Performing minimization step: 4688. Total energy = 5189.6340 kcal/mol (5186.0776 without restraints) Performing minimization step: 4689. Total energy = 5189.0627 kcal/mol (5185.5062 without restraints) Performing minimization step: 4690. Total energy = 5188.4920 kcal/mol (5184.9352 without restraints) Performing minimization step: 4691. Total energy = 5187.9215 kcal/mol (5184.3645 without restraints) Performing minimization step: 4692. Total energy = 5187.3515 kcal/mol (5183.7943 without restraints) Performing minimization step: 4693. Total energy = 5186.7822 kcal/mol (5183.2248 without restraints) Performing minimization step: 4694. Total energy = 5186.2125 kcal/mol (5182.6550 without restraints) Performing minimization step: 4695. Total energy = 5185.6431 kcal/mol (5182.0853 without restraints) Performing minimization step: 4696. Total energy = 5185.0743 kcal/mol (5181.5164 without restraints) Performing minimization step: 4697. Total energy = 5184.5056 kcal/mol (5180.9475 without restraints) Performing minimization step: 4698. Total energy = 5183.9371 kcal/mol (5180.3787 without restraints) Performing minimization step: 4699. Total energy = 5183.3689 kcal/mol (5179.8102 without restraints) Performing minimization step: 4700. Total energy = 5182.8017 kcal/mol (5179.2428 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 5182.2345 kcal/mol (5178.6754 without restraints) Performing minimization step: 4702. Total energy = 5181.6676 kcal/mol (5178.1083 without restraints) Performing minimization step: 4703. Total energy = 5181.1012 kcal/mol (5177.5419 without restraints) Performing minimization step: 4704. Total energy = 5180.5348 kcal/mol (5176.9752 without restraints) Performing minimization step: 4705. Total energy = 5179.9689 kcal/mol (5176.4090 without restraints) Performing minimization step: 4706. Total energy = 5179.4030 kcal/mol (5175.8429 without restraints) Performing minimization step: 4707. Total energy = 5178.8376 kcal/mol (5175.2772 without restraints) Performing minimization step: 4708. Total energy = 5178.2728 kcal/mol (5174.7122 without restraints) Performing minimization step: 4709. Total energy = 5177.7080 kcal/mol (5174.1472 without restraints) Performing minimization step: 4710. Total energy = 5177.1432 kcal/mol (5173.5822 without restraints) Performing minimization step: 4711. Total energy = 5176.5789 kcal/mol (5173.0177 without restraints) Performing minimization step: 4712. Total energy = 5176.0147 kcal/mol (5172.4533 without restraints) Performing minimization step: 4713. Total energy = 5175.4513 kcal/mol (5171.8896 without restraints) Performing minimization step: 4714. Total energy = 5174.8884 kcal/mol (5171.3267 without restraints) Performing minimization step: 4715. Total energy = 5174.3252 kcal/mol (5170.7631 without restraints) Performing minimization step: 4716. Total energy = 5173.7623 kcal/mol (5170.2000 without restraints) Performing minimization step: 4717. Total energy = 5173.1997 kcal/mol (5169.6371 without restraints) Performing minimization step: 4718. Total energy = 5172.6373 kcal/mol (5169.0746 without restraints) Performing minimization step: 4719. Total energy = 5172.0753 kcal/mol (5168.5124 without restraints) Performing minimization step: 4720. Total energy = 5171.5137 kcal/mol (5167.9506 without restraints) Performing minimization step: 4721. Total energy = 5170.9523 kcal/mol (5167.3889 without restraints) Performing minimization step: 4722. Total energy = 5170.3907 kcal/mol (5166.8270 without restraints) Performing minimization step: 4723. Total energy = 5169.8299 kcal/mol (5166.2661 without restraints) Performing minimization step: 4724. Total energy = 5169.2693 kcal/mol (5165.7053 without restraints) Performing minimization step: 4725. Total energy = 5168.7086 kcal/mol (5165.1446 without restraints) Performing minimization step: 4726. Total energy = 5168.1490 kcal/mol (5164.5846 without restraints) Performing minimization step: 4727. Total energy = 5167.5894 kcal/mol (5164.0247 without restraints) Performing minimization step: 4728. Total energy = 5167.0309 kcal/mol (5163.4660 without restraints) Performing minimization step: 4729. Total energy = 5166.4720 kcal/mol (5162.9070 without restraints) Performing minimization step: 4730. Total energy = 5165.9135 kcal/mol (5162.3482 without restraints) Performing minimization step: 4731. Total energy = 5165.3558 kcal/mol (5161.7902 without restraints) Performing minimization step: 4732. Total energy = 5164.7981 kcal/mol (5161.2323 without restraints) Performing minimization step: 4733. Total energy = 5164.2403 kcal/mol (5160.6744 without restraints) Performing minimization step: 4734. Total energy = 5163.6830 kcal/mol (5160.1168 without restraints) Performing minimization step: 4735. Total energy = 5163.1258 kcal/mol (5159.5594 without restraints) Performing minimization step: 4736. Total energy = 5162.5687 kcal/mol (5159.0021 without restraints) Performing minimization step: 4737. Total energy = 5162.0120 kcal/mol (5158.4452 without restraints) Performing minimization step: 4738. Total energy = 5161.4559 kcal/mol (5157.8889 without restraints) Performing minimization step: 4739. Total energy = 5160.8998 kcal/mol (5157.3325 without restraints) Performing minimization step: 4740. Total energy = 5160.3444 kcal/mol (5156.7768 without restraints) Performing minimization step: 4741. Total energy = 5159.7893 kcal/mol (5156.2215 without restraints) Performing minimization step: 4742. Total energy = 5159.2348 kcal/mol (5155.6667 without restraints) Performing minimization step: 4743. Total energy = 5158.6796 kcal/mol (5155.1114 without restraints) Performing minimization step: 4744. Total energy = 5158.1248 kcal/mol (5154.5563 without restraints) Performing minimization step: 4745. Total energy = 5157.5703 kcal/mol (5154.0015 without restraints) Performing minimization step: 4746. Total energy = 5157.0163 kcal/mol (5153.4475 without restraints) Performing minimization step: 4747. Total energy = 5156.4623 kcal/mol (5152.8932 without restraints) Performing minimization step: 4748. Total energy = 5155.9091 kcal/mol (5152.3397 without restraints) Performing minimization step: 4749. Total energy = 5155.3561 kcal/mol (5151.7864 without restraints) Performing minimization step: 4750. Total energy = 5154.8026 kcal/mol (5151.2328 without restraints) Performing minimization step: 4751. Total energy = 5154.2498 kcal/mol (5150.6797 without restraints) Performing minimization step: 4752. Total energy = 5153.6970 kcal/mol (5150.1267 without restraints) Performing minimization step: 4753. Total energy = 5153.1449 kcal/mol (5149.5743 without restraints) Performing minimization step: 4754. Total energy = 5152.5930 kcal/mol (5149.0223 without restraints) Performing minimization step: 4755. Total energy = 5152.0412 kcal/mol (5148.4702 without restraints) Performing minimization step: 4756. Total energy = 5151.4903 kcal/mol (5147.9191 without restraints) Performing minimization step: 4757. Total energy = 5150.9390 kcal/mol (5147.3675 without restraints) Performing minimization step: 4758. Total energy = 5150.3883 kcal/mol (5146.8168 without restraints) Performing minimization step: 4759. Total energy = 5149.8375 kcal/mol (5146.2656 without restraints) Performing minimization step: 4760. Total energy = 5149.2879 kcal/mol (5145.7158 without restraints) Performing minimization step: 4761. Total energy = 5148.7377 kcal/mol (5145.1653 without restraints) Performing minimization step: 4762. Total energy = 5148.1880 kcal/mol (5144.6155 without restraints) Performing minimization step: 4763. Total energy = 5147.6388 kcal/mol (5144.0660 without restraints) Performing minimization step: 4764. Total energy = 5147.0896 kcal/mol (5143.5165 without restraints) Performing minimization step: 4765. Total energy = 5146.5407 kcal/mol (5142.9676 without restraints) Performing minimization step: 4766. Total energy = 5145.9922 kcal/mol (5142.4188 without restraints) Performing minimization step: 4767. Total energy = 5145.4437 kcal/mol (5141.8699 without restraints) Performing minimization step: 4768. Total energy = 5144.8953 kcal/mol (5141.3214 without restraints) Performing minimization step: 4769. Total energy = 5144.3472 kcal/mol (5140.7730 without restraints) Performing minimization step: 4770. Total energy = 5143.7997 kcal/mol (5140.2253 without restraints) Performing minimization step: 4771. Total energy = 5143.2527 kcal/mol (5139.6780 without restraints) Performing minimization step: 4772. Total energy = 5142.7056 kcal/mol (5139.1307 without restraints) Performing minimization step: 4773. Total energy = 5142.1589 kcal/mol (5138.5839 without restraints) Performing minimization step: 4774. Total energy = 5141.6120 kcal/mol (5138.0366 without restraints) Performing minimization step: 4775. Total energy = 5141.0658 kcal/mol (5137.4904 without restraints) Performing minimization step: 4776. Total energy = 5140.5197 kcal/mol (5136.9439 without restraints) Performing minimization step: 4777. Total energy = 5139.9741 kcal/mol (5136.3980 without restraints) Performing minimization step: 4778. Total energy = 5139.4289 kcal/mol (5135.8526 without restraints) Performing minimization step: 4779. Total energy = 5138.8837 kcal/mol (5135.3072 without restraints) Performing minimization step: 4780. Total energy = 5138.3385 kcal/mol (5134.7619 without restraints) Performing minimization step: 4781. Total energy = 5137.7936 kcal/mol (5134.2166 without restraints) Performing minimization step: 4782. Total energy = 5137.2488 kcal/mol (5133.6716 without restraints) Performing minimization step: 4783. Total energy = 5136.7042 kcal/mol (5133.1268 without restraints) Performing minimization step: 4784. Total energy = 5136.1599 kcal/mol (5132.5822 without restraints) Performing minimization step: 4785. Total energy = 5135.6159 kcal/mol (5132.0379 without restraints) Performing minimization step: 4786. Total energy = 5135.0721 kcal/mol (5131.4941 without restraints) Performing minimization step: 4787. Total energy = 5134.5288 kcal/mol (5130.9504 without restraints) Performing minimization step: 4788. Total energy = 5133.9854 kcal/mol (5130.4066 without restraints) Performing minimization step: 4789. Total energy = 5133.4424 kcal/mol (5129.8635 without restraints) Performing minimization step: 4790. Total energy = 5132.8997 kcal/mol (5129.3206 without restraints) Performing minimization step: 4791. Total energy = 5132.3573 kcal/mol (5128.7779 without restraints) Performing minimization step: 4792. Total energy = 5131.8149 kcal/mol (5128.2353 without restraints) Performing minimization step: 4793. Total energy = 5131.2725 kcal/mol (5127.6927 without restraints) Performing minimization step: 4794. Total energy = 5130.7308 kcal/mol (5127.1510 without restraints) Performing minimization step: 4795. Total energy = 5130.1893 kcal/mol (5126.6090 without restraints) Performing minimization step: 4796. Total energy = 5129.6477 kcal/mol (5126.0672 without restraints) Performing minimization step: 4797. Total energy = 5129.1066 kcal/mol (5125.5259 without restraints) Performing minimization step: 4798. Total energy = 5128.5661 kcal/mol (5124.9850 without restraints) Performing minimization step: 4799. Total energy = 5128.0252 kcal/mol (5124.4439 without restraints) Performing minimization step: 4800. Total energy = 5127.4848 kcal/mol (5123.9033 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 5126.9445 kcal/mol (5123.3627 without restraints) Performing minimization step: 4802. Total energy = 5126.4049 kcal/mol (5122.8231 without restraints) Performing minimization step: 4803. Total energy = 5125.8651 kcal/mol (5122.2828 without restraints) Performing minimization step: 4804. Total energy = 5125.3255 kcal/mol (5121.7431 without restraints) Performing minimization step: 4805. Total energy = 5124.7863 kcal/mol (5121.2036 without restraints) Performing minimization step: 4806. Total energy = 5124.2476 kcal/mol (5120.6647 without restraints) Performing minimization step: 4807. Total energy = 5123.7086 kcal/mol (5120.1256 without restraints) Performing minimization step: 4808. Total energy = 5123.1702 kcal/mol (5119.5869 without restraints) Performing minimization step: 4809. Total energy = 5122.6317 kcal/mol (5119.0480 without restraints) Performing minimization step: 4810. Total energy = 5122.0933 kcal/mol (5118.5093 without restraints) Performing minimization step: 4811. Total energy = 5121.5554 kcal/mol (5117.9712 without restraints) Performing minimization step: 4812. Total energy = 5121.0174 kcal/mol (5117.4330 without restraints) Performing minimization step: 4813. Total energy = 5120.4798 kcal/mol (5116.8952 without restraints) Performing minimization step: 4814. Total energy = 5119.9426 kcal/mol (5116.3577 without restraints) Performing minimization step: 4815. Total energy = 5119.4051 kcal/mol (5115.8200 without restraints) Performing minimization step: 4816. Total energy = 5118.8681 kcal/mol (5115.2828 without restraints) Performing minimization step: 4817. Total energy = 5118.3317 kcal/mol (5114.7463 without restraints) Performing minimization step: 4818. Total energy = 5117.7951 kcal/mol (5114.2092 without restraints) Performing minimization step: 4819. Total energy = 5117.2586 kcal/mol (5113.6725 without restraints) Performing minimization step: 4820. Total energy = 5116.7228 kcal/mol (5113.1364 without restraints) Performing minimization step: 4821. Total energy = 5116.1868 kcal/mol (5112.6002 without restraints) Performing minimization step: 4822. Total energy = 5115.6512 kcal/mol (5112.0644 without restraints) Performing minimization step: 4823. Total energy = 5115.1155 kcal/mol (5111.5284 without restraints) Performing minimization step: 4824. Total energy = 5114.5800 kcal/mol (5110.9927 without restraints) Performing minimization step: 4825. Total energy = 5114.0445 kcal/mol (5110.4569 without restraints) Performing minimization step: 4826. Total energy = 5113.5092 kcal/mol (5109.9213 without restraints) Performing minimization step: 4827. Total energy = 5112.9739 kcal/mol (5109.3858 without restraints) Performing minimization step: 4828. Total energy = 5112.4389 kcal/mol (5108.8505 without restraints) Performing minimization step: 4829. Total energy = 5111.9038 kcal/mol (5108.3152 without restraints) Performing minimization step: 4830. Total energy = 5111.3690 kcal/mol (5107.7801 without restraints) Performing minimization step: 4831. Total energy = 5110.8345 kcal/mol (5107.2455 without restraints) Performing minimization step: 4832. Total energy = 5110.3006 kcal/mol (5106.7112 without restraints) Performing minimization step: 4833. Total energy = 5109.7670 kcal/mol (5106.1776 without restraints) Performing minimization step: 4834. Total energy = 5109.2336 kcal/mol (5105.6437 without restraints) Performing minimization step: 4835. Total energy = 5108.6999 kcal/mol (5105.1099 without restraints) Performing minimization step: 4836. Total energy = 5108.1666 kcal/mol (5104.5762 without restraints) Performing minimization step: 4837. Total energy = 5107.6333 kcal/mol (5104.0426 without restraints) Performing minimization step: 4838. Total energy = 5107.1001 kcal/mol (5103.5093 without restraints) Performing minimization step: 4839. Total energy = 5106.5676 kcal/mol (5102.9765 without restraints) Performing minimization step: 4840. Total energy = 5106.0346 kcal/mol (5102.4433 without restraints) Performing minimization step: 4841. Total energy = 5105.5025 kcal/mol (5101.9108 without restraints) Performing minimization step: 4842. Total energy = 5104.9699 kcal/mol (5101.3780 without restraints) Performing minimization step: 4843. Total energy = 5104.4374 kcal/mol (5100.8452 without restraints) Performing minimization step: 4844. Total energy = 5103.9046 kcal/mol (5100.3122 without restraints) Performing minimization step: 4845. Total energy = 5103.3721 kcal/mol (5099.7795 without restraints) Performing minimization step: 4846. Total energy = 5102.8403 kcal/mol (5099.2476 without restraints) Performing minimization step: 4847. Total energy = 5102.3083 kcal/mol (5098.7151 without restraints) Performing minimization step: 4848. Total energy = 5101.7768 kcal/mol (5098.1834 without restraints) Performing minimization step: 4849. Total energy = 5101.2452 kcal/mol (5097.6516 without restraints) Performing minimization step: 4850. Total energy = 5100.7143 kcal/mol (5097.1204 without restraints) Performing minimization step: 4851. Total energy = 5100.1829 kcal/mol (5096.5888 without restraints) Performing minimization step: 4852. Total energy = 5099.6518 kcal/mol (5096.0574 without restraints) Performing minimization step: 4853. Total energy = 5099.1207 kcal/mol (5095.5260 without restraints) Performing minimization step: 4854. Total energy = 5098.5902 kcal/mol (5094.9954 without restraints) Performing minimization step: 4855. Total energy = 5098.0597 kcal/mol (5094.4646 without restraints) Performing minimization step: 4856. Total energy = 5097.5291 kcal/mol (5093.9335 without restraints) Performing minimization step: 4857. Total energy = 5096.9981 kcal/mol (5093.4023 without restraints) Performing minimization step: 4858. Total energy = 5096.4679 kcal/mol (5092.8719 without restraints) Performing minimization step: 4859. Total energy = 5095.9375 kcal/mol (5092.3414 without restraints) Performing minimization step: 4860. Total energy = 5095.4072 kcal/mol (5091.8108 without restraints) Performing minimization step: 4861. Total energy = 5094.8771 kcal/mol (5091.2803 without restraints) Performing minimization step: 4862. Total energy = 5094.3470 kcal/mol (5090.7501 without restraints) Performing minimization step: 4863. Total energy = 5093.8170 kcal/mol (5090.2198 without restraints) Performing minimization step: 4864. Total energy = 5093.2874 kcal/mol (5089.6899 without restraints) Performing minimization step: 4865. Total energy = 5092.7578 kcal/mol (5089.1600 without restraints) Performing minimization step: 4866. Total energy = 5092.2283 kcal/mol (5088.6303 without restraints) Performing minimization step: 4867. Total energy = 5091.6989 kcal/mol (5088.1006 without restraints) Performing minimization step: 4868. Total energy = 5091.1691 kcal/mol (5087.5705 without restraints) Performing minimization step: 4869. Total energy = 5090.6398 kcal/mol (5087.0409 without restraints) Performing minimization step: 4870. Total energy = 5090.1105 kcal/mol (5086.5114 without restraints) Performing minimization step: 4871. Total energy = 5089.5816 kcal/mol (5085.9824 without restraints) Performing minimization step: 4872. Total energy = 5089.0524 kcal/mol (5085.4528 without restraints) Performing minimization step: 4873. Total energy = 5088.5234 kcal/mol (5084.9235 without restraints) Performing minimization step: 4874. Total energy = 5087.9949 kcal/mol (5084.3948 without restraints) Performing minimization step: 4875. Total energy = 5087.4663 kcal/mol (5083.8658 without restraints) Performing minimization step: 4876. Total energy = 5086.9373 kcal/mol (5083.3366 without restraints) Performing minimization step: 4877. Total energy = 5086.4085 kcal/mol (5082.8077 without restraints) Performing minimization step: 4878. Total energy = 5085.8795 kcal/mol (5082.2783 without restraints) Performing minimization step: 4879. Total energy = 5085.3508 kcal/mol (5081.7494 without restraints) Performing minimization step: 4880. Total energy = 5084.8225 kcal/mol (5081.2209 without restraints) Performing minimization step: 4881. Total energy = 5084.2940 kcal/mol (5080.6920 without restraints) Performing minimization step: 4882. Total energy = 5083.7654 kcal/mol (5080.1629 without restraints) Performing minimization step: 4883. Total energy = 5083.2367 kcal/mol (5079.6341 without restraints) Performing minimization step: 4884. Total energy = 5082.7085 kcal/mol (5079.1057 without restraints) Performing minimization step: 4885. Total energy = 5082.1799 kcal/mol (5078.5769 without restraints) Performing minimization step: 4886. Total energy = 5081.6512 kcal/mol (5078.0479 without restraints) Performing minimization step: 4887. Total energy = 5081.1236 kcal/mol (5077.5200 without restraints) Performing minimization step: 4888. Total energy = 5080.5954 kcal/mol (5076.9917 without restraints) Performing minimization step: 4889. Total energy = 5080.0672 kcal/mol (5076.4630 without restraints) Performing minimization step: 4890. Total energy = 5079.5390 kcal/mol (5075.9346 without restraints) Performing minimization step: 4891. Total energy = 5079.0108 kcal/mol (5075.4061 without restraints) Performing minimization step: 4892. Total energy = 5078.4824 kcal/mol (5074.8775 without restraints) Performing minimization step: 4893. Total energy = 5077.9544 kcal/mol (5074.3493 without restraints) Performing minimization step: 4894. Total energy = 5077.4266 kcal/mol (5073.8211 without restraints) Performing minimization step: 4895. Total energy = 5076.8988 kcal/mol (5073.2930 without restraints) Performing minimization step: 4896. Total energy = 5076.3705 kcal/mol (5072.7646 without restraints) Performing minimization step: 4897. Total energy = 5075.8422 kcal/mol (5072.2358 without restraints) Performing minimization step: 4898. Total energy = 5075.3138 kcal/mol (5071.7072 without restraints) Performing minimization step: 4899. Total energy = 5074.7857 kcal/mol (5071.1788 without restraints) Performing minimization step: 4900. Total energy = 5074.2575 kcal/mol (5070.6503 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 5073.7291 kcal/mol (5070.1217 without restraints) Performing minimization step: 4902. Total energy = 5073.2007 kcal/mol (5069.5930 without restraints) Performing minimization step: 4903. Total energy = 5072.6722 kcal/mol (5069.0642 without restraints) Performing minimization step: 4904. Total energy = 5072.1441 kcal/mol (5068.5358 without restraints) Performing minimization step: 4905. Total energy = 5071.6158 kcal/mol (5068.0072 without restraints) Performing minimization step: 4906. Total energy = 5071.0872 kcal/mol (5067.4783 without restraints) Performing minimization step: 4907. Total energy = 5070.5591 kcal/mol (5066.9500 without restraints) Performing minimization step: 4908. Total energy = 5070.0304 kcal/mol (5066.4211 without restraints) Performing minimization step: 4909. Total energy = 5069.5015 kcal/mol (5065.8919 without restraints) Performing minimization step: 4910. Total energy = 5068.9730 kcal/mol (5065.3632 without restraints) Performing minimization step: 4911. Total energy = 5068.4443 kcal/mol (5064.8341 without restraints) Performing minimization step: 4912. Total energy = 5067.9156 kcal/mol (5064.3053 without restraints) Performing minimization step: 4913. Total energy = 5067.3870 kcal/mol (5063.7762 without restraints) Performing minimization step: 4914. Total energy = 5066.8585 kcal/mol (5063.2476 without restraints) Performing minimization step: 4915. Total energy = 5066.3297 kcal/mol (5062.7183 without restraints) Performing minimization step: 4916. Total energy = 5065.8005 kcal/mol (5062.1889 without restraints) Performing minimization step: 4917. Total energy = 5065.2715 kcal/mol (5061.6596 without restraints) Performing minimization step: 4918. Total energy = 5064.7422 kcal/mol (5061.1300 without restraints) Performing minimization step: 4919. Total energy = 5064.2127 kcal/mol (5060.6003 without restraints) Performing minimization step: 4920. Total energy = 5063.6835 kcal/mol (5060.0708 without restraints) Performing minimization step: 4921. Total energy = 5063.1541 kcal/mol (5059.5413 without restraints) Performing minimization step: 4922. Total energy = 5062.6250 kcal/mol (5059.0117 without restraints) Performing minimization step: 4923. Total energy = 5062.0952 kcal/mol (5058.4816 without restraints) Performing minimization step: 4924. Total energy = 5061.5656 kcal/mol (5057.9520 without restraints) Performing minimization step: 4925. Total energy = 5061.0364 kcal/mol (5057.4222 without restraints) Performing minimization step: 4926. Total energy = 5060.5062 kcal/mol (5056.8918 without restraints) Performing minimization step: 4927. Total energy = 5059.9762 kcal/mol (5056.3615 without restraints) Performing minimization step: 4928. Total energy = 5059.4462 kcal/mol (5055.8313 without restraints) Performing minimization step: 4929. Total energy = 5058.9158 kcal/mol (5055.3005 without restraints) Performing minimization step: 4930. Total energy = 5058.3853 kcal/mol (5054.7697 without restraints) Performing minimization step: 4931. Total energy = 5057.8544 kcal/mol (5054.2385 without restraints) Performing minimization step: 4932. Total energy = 5057.3233 kcal/mol (5053.7072 without restraints) Performing minimization step: 4933. Total energy = 5056.7920 kcal/mol (5053.1756 without restraints) Performing minimization step: 4934. Total energy = 5056.2614 kcal/mol (5052.6447 without restraints) Performing minimization step: 4935. Total energy = 5055.7301 kcal/mol (5052.1131 without restraints) Performing minimization step: 4936. Total energy = 5055.1988 kcal/mol (5051.5815 without restraints) Performing minimization step: 4937. Total energy = 5054.6669 kcal/mol (5051.0493 without restraints) Performing minimization step: 4938. Total energy = 5054.1348 kcal/mol (5050.5170 without restraints) Performing minimization step: 4939. Total energy = 5053.6028 kcal/mol (5049.9846 without restraints) Performing minimization step: 4940. Total energy = 5053.0705 kcal/mol (5049.4521 without restraints) Performing minimization step: 4941. Total energy = 5052.5381 kcal/mol (5048.9193 without restraints) Performing minimization step: 4942. Total energy = 5052.0054 kcal/mol (5048.3864 without restraints) Performing minimization step: 4943. Total energy = 5051.4720 kcal/mol (5047.8526 without restraints) Performing minimization step: 4944. Total energy = 5050.9384 kcal/mol (5047.3188 without restraints) Performing minimization step: 4945. Total energy = 5050.4048 kcal/mol (5046.7848 without restraints) Performing minimization step: 4946. Total energy = 5049.8709 kcal/mol (5046.2508 without restraints) Performing minimization step: 4947. Total energy = 5049.3373 kcal/mol (5045.7168 without restraints) Performing minimization step: 4948. Total energy = 5048.8036 kcal/mol (5045.1828 without restraints) Performing minimization step: 4949. Total energy = 5048.2693 kcal/mol (5044.6482 without restraints) Performing minimization step: 4950. Total energy = 5047.7347 kcal/mol (5044.1133 without restraints) Performing minimization step: 4951. Total energy = 5047.2003 kcal/mol (5043.5787 without restraints) Performing minimization step: 4952. Total energy = 5046.6656 kcal/mol (5043.0436 without restraints) Performing minimization step: 4953. Total energy = 5046.1303 kcal/mol (5042.5080 without restraints) Performing minimization step: 4954. Total energy = 5045.5948 kcal/mol (5041.9722 without restraints) Performing minimization step: 4955. Total energy = 5045.0589 kcal/mol (5041.4360 without restraints) Performing minimization step: 4956. Total energy = 5044.5228 kcal/mol (5040.8997 without restraints) Performing minimization step: 4957. Total energy = 5043.9862 kcal/mol (5040.3628 without restraints) Performing minimization step: 4958. Total energy = 5043.4496 kcal/mol (5039.8260 without restraints) Performing minimization step: 4959. Total energy = 5042.9127 kcal/mol (5039.2887 without restraints) Performing minimization step: 4960. Total energy = 5042.3755 kcal/mol (5038.7513 without restraints) Performing minimization step: 4961. Total energy = 5041.8380 kcal/mol (5038.2134 without restraints) Performing minimization step: 4962. Total energy = 5041.3002 kcal/mol (5037.6752 without restraints) Performing minimization step: 4963. Total energy = 5040.7627 kcal/mol (5037.1375 without restraints) Performing minimization step: 4964. Total energy = 5040.2244 kcal/mol (5036.5988 without restraints) Performing minimization step: 4965. Total energy = 5039.6858 kcal/mol (5036.0601 without restraints) Performing minimization step: 4966. Total energy = 5039.1469 kcal/mol (5035.5207 without restraints) Performing minimization step: 4967. Total energy = 5038.6076 kcal/mol (5034.9811 without restraints) Performing minimization step: 4968. Total energy = 5038.0686 kcal/mol (5034.4418 without restraints) Performing minimization step: 4969. Total energy = 5037.5284 kcal/mol (5033.9013 without restraints) Performing minimization step: 4970. Total energy = 5036.9879 kcal/mol (5033.3605 without restraints) Performing minimization step: 4971. Total energy = 5036.4470 kcal/mol (5032.8193 without restraints) Performing minimization step: 4972. Total energy = 5035.9057 kcal/mol (5032.2776 without restraints) Performing minimization step: 4973. Total energy = 5035.3640 kcal/mol (5031.7358 without restraints) Performing minimization step: 4974. Total energy = 5034.8226 kcal/mol (5031.1941 without restraints) Performing minimization step: 4975. Total energy = 5034.2802 kcal/mol (5030.6513 without restraints) Performing minimization step: 4976. Total energy = 5033.7378 kcal/mol (5030.1086 without restraints) Performing minimization step: 4977. Total energy = 5033.1948 kcal/mol (5029.5653 without restraints) Performing minimization step: 4978. Total energy = 5032.6519 kcal/mol (5029.0220 without restraints) Performing minimization step: 4979. Total energy = 5032.1081 kcal/mol (5028.4780 without restraints) Performing minimization step: 4980. Total energy = 5031.5642 kcal/mol (5027.9337 without restraints) Performing minimization step: 4981. Total energy = 5031.0196 kcal/mol (5027.3888 without restraints) Performing minimization step: 4982. Total energy = 5030.4749 kcal/mol (5026.8440 without restraints) Performing minimization step: 4983. Total energy = 5029.9298 kcal/mol (5026.2984 without restraints) Performing minimization step: 4984. Total energy = 5029.3838 kcal/mol (5025.7521 without restraints) Performing minimization step: 4985. Total energy = 5028.8377 kcal/mol (5025.2057 without restraints) Performing minimization step: 4986. Total energy = 5028.2909 kcal/mol (5024.6586 without restraints) Performing minimization step: 4987. Total energy = 5027.7441 kcal/mol (5024.1115 without restraints) Performing minimization step: 4988. Total energy = 5027.1968 kcal/mol (5023.5641 without restraints) Performing minimization step: 4989. Total energy = 5026.6492 kcal/mol (5023.0160 without restraints) Performing minimization step: 4990. Total energy = 5026.1012 kcal/mol (5022.4677 without restraints) Performing minimization step: 4991. Total energy = 5025.5527 kcal/mol (5021.9191 without restraints) Performing minimization step: 4992. Total energy = 5025.0039 kcal/mol (5021.3698 without restraints) Performing minimization step: 4993. Total energy = 5024.4545 kcal/mol (5020.8200 without restraints) Performing minimization step: 4994. Total energy = 5023.9047 kcal/mol (5020.2701 without restraints) Performing minimization step: 4995. Total energy = 5023.3551 kcal/mol (5019.7201 without restraints) Performing minimization step: 4996. Total energy = 5022.8045 kcal/mol (5019.1692 without restraints) Performing minimization step: 4997. Total energy = 5022.2537 kcal/mol (5018.6181 without restraints) Performing minimization step: 4998. Total energy = 5021.7018 kcal/mol (5018.0658 without restraints) Performing minimization step: 4999. Total energy = 5021.1501 kcal/mol (5017.5138 without restraints) Performing minimization step: 5000. Total energy = 5020.5975 kcal/mol (5016.9609 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/435ee60b/tmp/C8MA1_refx/C8MA1_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to C8MA1_refx.pdb DONE!