============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS.pdb ============================================================================= Atom's 3247 H8 residue renamed to RG3 Atom's 3246 H21 residue renamed to RG3 Atom's 3245 H22 residue renamed to RG3 Atom's 3244 H1 residue renamed to RG3 Atom's 3243 HO'2 residue renamed to RG3 Atom's 3242 H2' residue renamed to RG3 Atom's 3241 H1' residue renamed to RG3 Atom's 3240 H3' residue renamed to RG3 Atom's 3239 H4' residue renamed to RG3 Atom's 3238 H5'2 residue renamed to RG3 Atom's 3237 H5'1 residue renamed to RG3 Atom's 3236 N9 residue renamed to RG3 Atom's 3235 C8 residue renamed to RG3 Atom's 3234 N7 residue renamed to RG3 Atom's 3233 O6 residue renamed to RG3 Atom's 3232 C6 residue renamed to RG3 Atom's 3231 C5 residue renamed to RG3 Atom's 3230 C4 residue renamed to RG3 Atom's 3229 N3 residue renamed to RG3 Atom's 3228 N2 residue renamed to RG3 Atom's 3227 C2 residue renamed to RG3 Atom's 3226 N1 residue renamed to RG3 Atom's 3225 O2' residue renamed to RG3 Atom's 3224 C2' residue renamed to RG3 Atom's 3223 C1' residue renamed to RG3 Atom's 3222 O3' residue renamed to RG3 Atom's 3221 C3' residue renamed to RG3 Atom's 3220 O4' residue renamed to RG3 Atom's 3219 C4' residue renamed to RG3 Atom's 3218 C5' residue renamed to RG3 Atom's 3217 O5' residue renamed to RG3 Atom's 3216 OP1 residue renamed to RG3 Atom's 3215 OP2 residue renamed to RG3 Atom's 3214 P residue renamed to RG3 Missing atom added: ATOM 35 H3T RG3 A 101 -26.110 -6.902 -63.107 1.00 0.00 H Missing atom added: ATOM 2 OP3 A A 1 -30.840 -0.103 -50.600 1.00 45.03 O Number of atoms: 3249 Number of residues: 101 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 3508 Number of angles built: 6277 Number of dihedrals built: 9562 Number of impropers built: 692 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 5266591 Number of van der Waals pairs: 362068 Number of H-bonds built: 40 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 10 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 7838.3523 kcal/mol (7827.4797 without restraints) Performing minimization step: 2. Total energy = 7815.5135 kcal/mol (7804.7072 without restraints) Performing minimization step: 3. Total energy = 7793.2110 kcal/mol (7782.4658 without restraints) Performing minimization step: 4. Total energy = 7771.4019 kcal/mol (7760.7131 without restraints) Performing minimization step: 5. Total energy = 7750.0467 kcal/mol (7739.4099 without restraints) Performing minimization step: 6. Total energy = 7729.1109 kcal/mol (7718.5223 without restraints) Performing minimization step: 7. Total energy = 7708.5621 kcal/mol (7698.0177 without restraints) Performing minimization step: 8. Total energy = 7688.3717 kcal/mol (7677.8686 without restraints) Performing minimization step: 9. Total energy = 7668.5146 kcal/mol (7658.0498 without restraints) Performing minimization step: 10. Total energy = 7648.9669 kcal/mol (7638.5379 without restraints) Performing minimization step: 11. Total energy = 7629.7078 kcal/mol (7619.3122 without restraints) Performing minimization step: 12. Total energy = 7610.7188 kcal/mol (7600.3548 without restraints) Performing minimization step: 13. Total energy = 7591.9825 kcal/mol (7581.6477 without restraints) Performing minimization step: 14. Total energy = 7573.4834 kcal/mol (7563.1762 without restraints) Performing minimization step: 15. Total energy = 7555.2071 kcal/mol (7544.9263 without restraints) Performing minimization step: 16. Total energy = 7537.1415 kcal/mol (7526.8853 without restraints) Performing minimization step: 17. Total energy = 7519.2750 kcal/mol (7509.0422 without restraints) Performing minimization step: 18. Total energy = 7501.5970 kcal/mol (7491.3865 without restraints) Performing minimization step: 19. Total energy = 7484.0974 kcal/mol (7473.9080 without restraints) Performing minimization step: 20. Total energy = 7466.7683 kcal/mol (7456.5991 without restraints) Performing minimization step: 21. Total energy = 7449.6014 kcal/mol (7439.4516 without restraints) Performing minimization step: 22. Total energy = 7432.5892 kcal/mol (7422.4577 without restraints) Performing minimization step: 23. Total energy = 7415.7253 kcal/mol (7405.6117 without restraints) Performing minimization step: 24. Total energy = 7399.0037 kcal/mol (7388.9070 without restraints) Performing minimization step: 25. Total energy = 7382.4183 kcal/mol (7372.3380 without restraints) Performing minimization step: 26. Total energy = 7365.9640 kcal/mol (7355.8996 without restraints) Performing minimization step: 27. Total energy = 7349.6362 kcal/mol (7339.5870 without restraints) Performing minimization step: 28. Total energy = 7333.4306 kcal/mol (7323.3962 without restraints) Performing minimization step: 29. Total energy = 7317.3422 kcal/mol (7307.3220 without restraints) Performing minimization step: 30. Total energy = 7301.3681 kcal/mol (7291.3618 without restraints) Performing minimization step: 31. Total energy = 7285.5053 kcal/mol (7275.5126 without restraints) Performing minimization step: 32. Total energy = 7269.7499 kcal/mol (7259.7704 without restraints) Performing minimization step: 33. Total energy = 7254.0986 kcal/mol (7244.1319 without restraints) Performing minimization step: 34. Total energy = 7238.5492 kcal/mol (7228.5950 without restraints) Performing minimization step: 35. Total energy = 7223.0990 kcal/mol (7213.1568 without restraints) Performing minimization step: 36. Total energy = 7207.7450 kcal/mol (7197.8150 without restraints) Performing minimization step: 37. Total energy = 7192.4861 kcal/mol (7182.5678 without restraints) Performing minimization step: 38. Total energy = 7177.3193 kcal/mol (7167.4124 without restraints) Performing minimization step: 39. Total energy = 7162.2430 kcal/mol (7152.3474 without restraints) Performing minimization step: 40. Total energy = 7147.2552 kcal/mol (7137.3705 without restraints) Performing minimization step: 41. Total energy = 7132.3537 kcal/mol (7122.4798 without restraints) Performing minimization step: 42. Total energy = 7117.5377 kcal/mol (7107.6744 without restraints) Performing minimization step: 43. Total energy = 7102.8050 kcal/mol (7092.9522 without restraints) Performing minimization step: 44. Total energy = 7088.1546 kcal/mol (7078.3120 without restraints) Performing minimization step: 45. Total energy = 7073.5846 kcal/mol (7063.7521 without restraints) Performing minimization step: 46. Total energy = 7059.0940 kcal/mol (7049.2716 without restraints) Performing minimization step: 47. Total energy = 7044.6814 kcal/mol (7034.8688 without restraints) Performing minimization step: 48. Total energy = 7030.3464 kcal/mol (7020.5435 without restraints) Performing minimization step: 49. Total energy = 7016.0874 kcal/mol (7006.2941 without restraints) Performing minimization step: 50. Total energy = 7001.9031 kcal/mol (6992.1193 without restraints) Performing minimization step: 51. Total energy = 6987.7923 kcal/mol (6978.0179 without restraints) Performing minimization step: 52. Total energy = 6973.7541 kcal/mol (6963.9889 without restraints) Performing minimization step: 53. Total energy = 6959.7884 kcal/mol (6950.0323 without restraints) Performing minimization step: 54. Total energy = 6945.8939 kcal/mol (6936.1469 without restraints) Performing minimization step: 55. Total energy = 6932.0696 kcal/mol (6922.3315 without restraints) Performing minimization step: 56. Total energy = 6918.3151 kcal/mol (6908.5858 without restraints) Performing minimization step: 57. Total energy = 6904.6299 kcal/mol (6894.9095 without restraints) Performing minimization step: 58. Total energy = 6891.0124 kcal/mol (6881.3008 without restraints) Performing minimization step: 59. Total energy = 6877.4627 kcal/mol (6867.7596 without restraints) Performing minimization step: 60. Total energy = 6863.9794 kcal/mol (6854.2849 without restraints) Performing minimization step: 61. Total energy = 6850.5621 kcal/mol (6840.8760 without restraints) Performing minimization step: 62. Total energy = 6837.2105 kcal/mol (6827.5330 without restraints) Performing minimization step: 63. Total energy = 6823.9241 kcal/mol (6814.2549 without restraints) Performing minimization step: 64. Total energy = 6810.7017 kcal/mol (6801.0408 without restraints) Performing minimization step: 65. Total energy = 6797.5436 kcal/mol (6787.8909 without restraints) Performing minimization step: 66. Total energy = 6784.4487 kcal/mol (6774.8042 without restraints) Performing minimization step: 67. Total energy = 6771.4176 kcal/mol (6761.7812 without restraints) Performing minimization step: 68. Total energy = 6758.4481 kcal/mol (6748.8198 without restraints) Performing minimization step: 69. Total energy = 6745.5408 kcal/mol (6735.9205 without restraints) Performing minimization step: 70. Total energy = 6732.6950 kcal/mol (6723.0828 without restraints) Performing minimization step: 71. Total energy = 6719.9105 kcal/mol (6710.3059 without restraints) Performing minimization step: 72. Total energy = 6707.1863 kcal/mol (6697.5897 without restraints) Performing minimization step: 73. Total energy = 6694.5226 kcal/mol (6684.9339 without restraints) Performing minimization step: 74. Total energy = 6681.9187 kcal/mol (6672.3378 without restraints) Performing minimization step: 75. Total energy = 6669.3742 kcal/mol (6659.8009 without restraints) Performing minimization step: 76. Total energy = 6656.8888 kcal/mol (6647.3233 without restraints) Performing minimization step: 77. Total energy = 6644.4622 kcal/mol (6634.9043 without restraints) Performing minimization step: 78. Total energy = 6632.0933 kcal/mol (6622.5431 without restraints) Performing minimization step: 79. Total energy = 6619.7833 kcal/mol (6610.2406 without restraints) Performing minimization step: 80. Total energy = 6607.5312 kcal/mol (6597.9963 without restraints) Performing minimization step: 81. Total energy = 6595.3366 kcal/mol (6585.8092 without restraints) Performing minimization step: 82. Total energy = 6583.1994 kcal/mol (6573.6793 without restraints) Performing minimization step: 83. Total energy = 6571.1183 kcal/mol (6561.6058 without restraints) Performing minimization step: 84. Total energy = 6559.0939 kcal/mol (6549.5888 without restraints) Performing minimization step: 85. Total energy = 6547.1257 kcal/mol (6537.6278 without restraints) Performing minimization step: 86. Total energy = 6535.2133 kcal/mol (6525.7230 without restraints) Performing minimization step: 87. Total energy = 6523.3569 kcal/mol (6513.8738 without restraints) Performing minimization step: 88. Total energy = 6511.5550 kcal/mol (6502.0791 without restraints) Performing minimization step: 89. Total energy = 6499.8085 kcal/mol (6490.3399 without restraints) Performing minimization step: 90. Total energy = 6488.1171 kcal/mol (6478.6558 without restraints) Performing minimization step: 91. Total energy = 6476.4800 kcal/mol (6467.0259 without restraints) Performing minimization step: 92. Total energy = 6464.8977 kcal/mol (6455.4507 without restraints) Performing minimization step: 93. Total energy = 6453.3693 kcal/mol (6443.9293 without restraints) Performing minimization step: 94. Total energy = 6441.8946 kcal/mol (6432.4619 without restraints) Performing minimization step: 95. Total energy = 6430.4736 kcal/mol (6421.0478 without restraints) Performing minimization step: 96. Total energy = 6419.1059 kcal/mol (6409.6874 without restraints) Performing minimization step: 97. Total energy = 6407.7915 kcal/mol (6398.3799 without restraints) Performing minimization step: 98. Total energy = 6396.5297 kcal/mol (6387.1252 without restraints) Performing minimization step: 99. Total energy = 6385.3205 kcal/mol (6375.9230 without restraints) Performing minimization step: 100. Total energy = 6374.1633 kcal/mol (6364.7727 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 101. Total energy = 6363.0594 kcal/mol (6353.6759 without restraints) Performing minimization step: 102. Total energy = 6352.0067 kcal/mol (6342.6300 without restraints) Performing minimization step: 103. Total energy = 6341.0064 kcal/mol (6331.6367 without restraints) Performing minimization step: 104. Total energy = 6330.0572 kcal/mol (6320.6943 without restraints) Performing minimization step: 105. Total energy = 6319.1593 kcal/mol (6309.8033 without restraints) Performing minimization step: 106. Total energy = 6308.3130 kcal/mol (6298.9637 without restraints) Performing minimization step: 107. Total energy = 6297.5171 kcal/mol (6288.1747 without restraints) Performing minimization step: 108. Total energy = 6286.7722 kcal/mol (6277.4367 without restraints) Performing minimization step: 109. Total energy = 6276.0779 kcal/mol (6266.7489 without restraints) Performing minimization step: 110. Total energy = 6265.4339 kcal/mol (6256.1118 without restraints) Performing minimization step: 111. Total energy = 6254.8397 kcal/mol (6245.5242 without restraints) Performing minimization step: 112. Total energy = 6244.2953 kcal/mol (6234.9867 without restraints) Performing minimization step: 113. Total energy = 6233.8006 kcal/mol (6224.4985 without restraints) Performing minimization step: 114. Total energy = 6223.3553 kcal/mol (6214.0598 without restraints) Performing minimization step: 115. Total energy = 6212.9596 kcal/mol (6203.6707 without restraints) Performing minimization step: 116. Total energy = 6202.6135 kcal/mol (6193.3313 without restraints) Performing minimization step: 117. Total energy = 6192.3156 kcal/mol (6183.0401 without restraints) Performing minimization step: 118. Total energy = 6182.0671 kcal/mol (6172.7981 without restraints) Performing minimization step: 119. Total energy = 6171.8666 kcal/mol (6162.6041 without restraints) Performing minimization step: 120. Total energy = 6161.7151 kcal/mol (6152.4590 without restraints) Performing minimization step: 121. Total energy = 6151.6116 kcal/mol (6142.3624 without restraints) Performing minimization step: 122. Total energy = 6141.5573 kcal/mol (6132.3144 without restraints) Performing minimization step: 123. Total energy = 6131.5497 kcal/mol (6122.3133 without restraints) Performing minimization step: 124. Total energy = 6121.5901 kcal/mol (6112.3601 without restraints) Performing minimization step: 125. Total energy = 6111.6772 kcal/mol (6102.4535 without restraints) Performing minimization step: 126. Total energy = 6101.8117 kcal/mol (6092.5946 without restraints) Performing minimization step: 127. Total energy = 6091.9939 kcal/mol (6082.7832 without restraints) Performing minimization step: 128. Total energy = 6082.2223 kcal/mol (6073.0178 without restraints) Performing minimization step: 129. Total energy = 6072.4983 kcal/mol (6063.3003 without restraints) Performing minimization step: 130. Total energy = 6062.8206 kcal/mol (6053.6289 without restraints) Performing minimization step: 131. Total energy = 6053.1890 kcal/mol (6044.0037 without restraints) Performing minimization step: 132. Total energy = 6043.6039 kcal/mol (6034.4249 without restraints) Performing minimization step: 133. Total energy = 6034.0651 kcal/mol (6024.8924 without restraints) Performing minimization step: 134. Total energy = 6024.5723 kcal/mol (6015.4061 without restraints) Performing minimization step: 135. Total energy = 6015.1252 kcal/mol (6005.9649 without restraints) Performing minimization step: 136. Total energy = 6005.7237 kcal/mol (5996.5697 without restraints) Performing minimization step: 137. Total energy = 5996.3677 kcal/mol (5987.2199 without restraints) Performing minimization step: 138. Total energy = 5987.0565 kcal/mol (5977.9150 without restraints) Performing minimization step: 139. Total energy = 5977.7903 kcal/mol (5968.6549 without restraints) Performing minimization step: 140. Total energy = 5968.5690 kcal/mol (5959.4397 without restraints) Performing minimization step: 141. Total energy = 5959.3920 kcal/mol (5950.2689 without restraints) Performing minimization step: 142. Total energy = 5950.2600 kcal/mol (5941.1430 without restraints) Performing minimization step: 143. Total energy = 5941.1719 kcal/mol (5932.0610 without restraints) Performing minimization step: 144. Total energy = 5932.1282 kcal/mol (5923.0235 without restraints) Performing minimization step: 145. Total energy = 5923.1286 kcal/mol (5914.0298 without restraints) Performing minimization step: 146. Total energy = 5914.1726 kcal/mol (5905.0799 without restraints) Performing minimization step: 147. Total energy = 5905.2604 kcal/mol (5896.1738 without restraints) Performing minimization step: 148. Total energy = 5896.3916 kcal/mol (5887.3110 without restraints) Performing minimization step: 149. Total energy = 5887.5661 kcal/mol (5878.4915 without restraints) Performing minimization step: 150. Total energy = 5878.7836 kcal/mol (5869.7148 without restraints) Performing minimization step: 151. Total energy = 5870.0440 kcal/mol (5860.9813 without restraints) Performing minimization step: 152. Total energy = 5861.3475 kcal/mol (5852.2908 without restraints) Performing minimization step: 153. Total energy = 5852.6935 kcal/mol (5843.6426 without restraints) Performing minimization step: 154. Total energy = 5844.0822 kcal/mol (5835.0373 without restraints) Performing minimization step: 155. Total energy = 5835.5130 kcal/mol (5826.4739 without restraints) Performing minimization step: 156. Total energy = 5826.9859 kcal/mol (5817.9527 without restraints) Performing minimization step: 157. Total energy = 5818.5005 kcal/mol (5809.4732 without restraints) Performing minimization step: 158. Total energy = 5810.0564 kcal/mol (5801.0349 without restraints) Performing minimization step: 159. Total energy = 5801.6537 kcal/mol (5792.6380 without restraints) Performing minimization step: 160. Total energy = 5793.2933 kcal/mol (5784.2834 without restraints) Performing minimization step: 161. Total energy = 5784.9735 kcal/mol (5775.9694 without restraints) Performing minimization step: 162. Total energy = 5776.6952 kcal/mol (5767.6970 without restraints) Performing minimization step: 163. Total energy = 5768.4579 kcal/mol (5759.4653 without restraints) Performing minimization step: 164. Total energy = 5760.2613 kcal/mol (5751.2744 without restraints) Performing minimization step: 165. Total energy = 5752.1054 kcal/mol (5743.1242 without restraints) Performing minimization step: 166. Total energy = 5743.9898 kcal/mol (5735.0143 without restraints) Performing minimization step: 167. Total energy = 5735.9143 kcal/mol (5726.9445 without restraints) Performing minimization step: 168. Total energy = 5727.8789 kcal/mol (5718.9148 without restraints) Performing minimization step: 169. Total energy = 5719.8834 kcal/mol (5710.9249 without restraints) Performing minimization step: 170. Total energy = 5711.9277 kcal/mol (5702.9751 without restraints) Performing minimization step: 171. Total energy = 5704.0115 kcal/mol (5695.0642 without restraints) Performing minimization step: 172. Total energy = 5696.1345 kcal/mol (5687.1928 without restraints) Performing minimization step: 173. Total energy = 5688.2965 kcal/mol (5679.3604 without restraints) Performing minimization step: 174. Total energy = 5680.4977 kcal/mol (5671.5672 without restraints) Performing minimization step: 175. Total energy = 5672.7379 kcal/mol (5663.8129 without restraints) Performing minimization step: 176. Total energy = 5665.0162 kcal/mol (5656.0966 without restraints) Performing minimization step: 177. Total energy = 5657.3333 kcal/mol (5648.4193 without restraints) Performing minimization step: 178. Total energy = 5649.6892 kcal/mol (5640.7807 without restraints) Performing minimization step: 179. Total energy = 5642.0828 kcal/mol (5633.1796 without restraints) Performing minimization step: 180. Total energy = 5634.5142 kcal/mol (5625.6165 without restraints) Performing minimization step: 181. Total energy = 5626.9839 kcal/mol (5618.0917 without restraints) Performing minimization step: 182. Total energy = 5619.4910 kcal/mol (5610.6041 without restraints) Performing minimization step: 183. Total energy = 5612.0352 kcal/mol (5603.1538 without restraints) Performing minimization step: 184. Total energy = 5604.6174 kcal/mol (5595.7415 without restraints) Performing minimization step: 185. Total energy = 5597.2365 kcal/mol (5588.3658 without restraints) Performing minimization step: 186. Total energy = 5589.8925 kcal/mol (5581.0271 without restraints) Performing minimization step: 187. Total energy = 5582.5853 kcal/mol (5573.7252 without restraints) Performing minimization step: 188. Total energy = 5575.3143 kcal/mol (5566.4595 without restraints) Performing minimization step: 189. Total energy = 5568.0796 kcal/mol (5559.2301 without restraints) Performing minimization step: 190. Total energy = 5560.8811 kcal/mol (5552.0368 without restraints) Performing minimization step: 191. Total energy = 5553.7189 kcal/mol (5544.8798 without restraints) Performing minimization step: 192. Total energy = 5546.5925 kcal/mol (5537.7587 without restraints) Performing minimization step: 193. Total energy = 5539.5018 kcal/mol (5530.6732 without restraints) Performing minimization step: 194. Total energy = 5532.4465 kcal/mol (5523.6231 without restraints) Performing minimization step: 195. Total energy = 5525.4266 kcal/mol (5516.6084 without restraints) Performing minimization step: 196. Total energy = 5518.4424 kcal/mol (5509.6295 without restraints) Performing minimization step: 197. Total energy = 5511.4929 kcal/mol (5502.6849 without restraints) Performing minimization step: 198. Total energy = 5504.5778 kcal/mol (5495.7749 without restraints) Performing minimization step: 199. Total energy = 5497.6973 kcal/mol (5488.8995 without restraints) Performing minimization step: 200. Total energy = 5490.8517 kcal/mol (5482.0591 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 201. Total energy = 5484.0404 kcal/mol (5475.2528 without restraints) Performing minimization step: 202. Total energy = 5477.2631 kcal/mol (5468.4807 without restraints) Performing minimization step: 203. Total energy = 5470.5193 kcal/mol (5461.7417 without restraints) Performing minimization step: 204. Total energy = 5463.8096 kcal/mol (5455.0371 without restraints) Performing minimization step: 205. Total energy = 5457.1335 kcal/mol (5448.3660 without restraints) Performing minimization step: 206. Total energy = 5450.4907 kcal/mol (5441.7281 without restraints) Performing minimization step: 207. Total energy = 5443.8810 kcal/mol (5435.1233 without restraints) Performing minimization step: 208. Total energy = 5437.3040 kcal/mol (5428.5511 without restraints) Performing minimization step: 209. Total energy = 5430.7604 kcal/mol (5422.0127 without restraints) Performing minimization step: 210. Total energy = 5424.2494 kcal/mol (5415.5065 without restraints) Performing minimization step: 211. Total energy = 5417.7713 kcal/mol (5409.0333 without restraints) Performing minimization step: 212. Total energy = 5411.3254 kcal/mol (5402.5923 without restraints) Performing minimization step: 213. Total energy = 5404.9114 kcal/mol (5396.1831 without restraints) Performing minimization step: 214. Total energy = 5398.5292 kcal/mol (5389.8057 without restraints) Performing minimization step: 215. Total energy = 5392.1791 kcal/mol (5383.4604 without restraints) Performing minimization step: 216. Total energy = 5385.8605 kcal/mol (5377.1465 without restraints) Performing minimization step: 217. Total energy = 5379.5734 kcal/mol (5370.8642 without restraints) Performing minimization step: 218. Total energy = 5373.3177 kcal/mol (5364.6133 without restraints) Performing minimization step: 219. Total energy = 5367.0921 kcal/mol (5358.3925 without restraints) Performing minimization step: 220. Total energy = 5360.8986 kcal/mol (5352.2037 without restraints) Performing minimization step: 221. Total energy = 5354.7355 kcal/mol (5346.0451 without restraints) Performing minimization step: 222. Total energy = 5348.6030 kcal/mol (5339.9174 without restraints) Performing minimization step: 223. Total energy = 5342.5008 kcal/mol (5333.8199 without restraints) Performing minimization step: 224. Total energy = 5336.4292 kcal/mol (5327.7529 without restraints) Performing minimization step: 225. Total energy = 5330.3868 kcal/mol (5321.7151 without restraints) Performing minimization step: 226. Total energy = 5324.3749 kcal/mol (5315.7078 without restraints) Performing minimization step: 227. Total energy = 5318.3930 kcal/mol (5309.7305 without restraints) Performing minimization step: 228. Total energy = 5312.4399 kcal/mol (5303.7820 without restraints) Performing minimization step: 229. Total energy = 5306.5162 kcal/mol (5297.8628 without restraints) Performing minimization step: 230. Total energy = 5300.6219 kcal/mol (5291.9731 without restraints) Performing minimization step: 231. Total energy = 5294.7566 kcal/mol (5286.1122 without restraints) Performing minimization step: 232. Total energy = 5288.9200 kcal/mol (5280.2800 without restraints) Performing minimization step: 233. Total energy = 5283.1125 kcal/mol (5274.4773 without restraints) Performing minimization step: 234. Total energy = 5277.3331 kcal/mol (5268.7022 without restraints) Performing minimization step: 235. Total energy = 5271.5817 kcal/mol (5262.9552 without restraints) Performing minimization step: 236. Total energy = 5265.8589 kcal/mol (5257.2368 without restraints) Performing minimization step: 237. Total energy = 5260.1640 kcal/mol (5251.5463 without restraints) Performing minimization step: 238. Total energy = 5254.4966 kcal/mol (5245.8833 without restraints) Performing minimization step: 239. Total energy = 5248.8568 kcal/mol (5240.2480 without restraints) Performing minimization step: 240. Total energy = 5243.2447 kcal/mol (5234.6402 without restraints) Performing minimization step: 241. Total energy = 5237.6599 kcal/mol (5229.0597 without restraints) Performing minimization step: 242. Total energy = 5232.1019 kcal/mol (5223.5060 without restraints) Performing minimization step: 243. Total energy = 5226.5708 kcal/mol (5217.9792 without restraints) Performing minimization step: 244. Total energy = 5221.0665 kcal/mol (5212.4792 without restraints) Performing minimization step: 245. Total energy = 5215.5888 kcal/mol (5207.0059 without restraints) Performing minimization step: 246. Total energy = 5210.1375 kcal/mol (5201.5587 without restraints) Performing minimization step: 247. Total energy = 5204.7124 kcal/mol (5196.1378 without restraints) Performing minimization step: 248. Total energy = 5199.3132 kcal/mol (5190.7427 without restraints) Performing minimization step: 249. Total energy = 5193.9402 kcal/mol (5185.3741 without restraints) Performing minimization step: 250. Total energy = 5188.5927 kcal/mol (5180.0308 without restraints) Performing minimization step: 251. Total energy = 5183.2709 kcal/mol (5174.7132 without restraints) Performing minimization step: 252. Total energy = 5177.9745 kcal/mol (5169.4208 without restraints) Performing minimization step: 253. Total energy = 5172.7030 kcal/mol (5164.1534 without restraints) Performing minimization step: 254. Total energy = 5167.4563 kcal/mol (5158.9109 without restraints) Performing minimization step: 255. Total energy = 5162.2353 kcal/mol (5153.6940 without restraints) Performing minimization step: 256. Total energy = 5157.0384 kcal/mol (5148.5011 without restraints) Performing minimization step: 257. Total energy = 5151.8664 kcal/mol (5143.3332 without restraints) Performing minimization step: 258. Total energy = 5146.7189 kcal/mol (5138.1897 without restraints) Performing minimization step: 259. Total energy = 5141.5954 kcal/mol (5133.0703 without restraints) Performing minimization step: 260. Total energy = 5136.4961 kcal/mol (5127.9750 without restraints) Performing minimization step: 261. Total energy = 5131.4208 kcal/mol (5122.9037 without restraints) Performing minimization step: 262. Total energy = 5126.3690 kcal/mol (5117.8558 without restraints) Performing minimization step: 263. Total energy = 5121.3413 kcal/mol (5112.8322 without restraints) Performing minimization step: 264. Total energy = 5116.3367 kcal/mol (5107.8315 without restraints) Performing minimization step: 265. Total energy = 5111.3555 kcal/mol (5102.8542 without restraints) Performing minimization step: 266. Total energy = 5106.3971 kcal/mol (5097.8997 without restraints) Performing minimization step: 267. Total energy = 5101.4618 kcal/mol (5092.9682 without restraints) Performing minimization step: 268. Total energy = 5096.5492 kcal/mol (5088.0596 without restraints) Performing minimization step: 269. Total energy = 5091.6596 kcal/mol (5083.1739 without restraints) Performing minimization step: 270. Total energy = 5086.7924 kcal/mol (5078.3105 without restraints) Performing minimization step: 271. Total energy = 5081.9471 kcal/mol (5073.4691 without restraints) Performing minimization step: 272. Total energy = 5077.1245 kcal/mol (5068.6503 without restraints) Performing minimization step: 273. Total energy = 5072.3240 kcal/mol (5063.8535 without restraints) Performing minimization step: 274. Total energy = 5067.5454 kcal/mol (5059.0788 without restraints) Performing minimization step: 275. Total energy = 5062.7884 kcal/mol (5054.3256 without restraints) Performing minimization step: 276. Total energy = 5058.0528 kcal/mol (5049.5937 without restraints) Performing minimization step: 277. Total energy = 5053.3387 kcal/mol (5044.8834 without restraints) Performing minimization step: 278. Total energy = 5048.6464 kcal/mol (5040.1947 without restraints) Performing minimization step: 279. Total energy = 5043.9745 kcal/mol (5035.5267 without restraints) Performing minimization step: 280. Total energy = 5039.3243 kcal/mol (5030.8801 without restraints) Performing minimization step: 281. Total energy = 5034.6946 kcal/mol (5026.2541 without restraints) Performing minimization step: 282. Total energy = 5030.0856 kcal/mol (5021.6489 without restraints) Performing minimization step: 283. Total energy = 5025.4975 kcal/mol (5017.0644 without restraints) Performing minimization step: 284. Total energy = 5020.9299 kcal/mol (5012.5003 without restraints) Performing minimization step: 285. Total energy = 5016.3821 kcal/mol (5007.9563 without restraints) Performing minimization step: 286. Total energy = 5011.8553 kcal/mol (5003.4331 without restraints) Performing minimization step: 287. Total energy = 5007.3481 kcal/mol (4998.9294 without restraints) Performing minimization step: 288. Total energy = 5002.8608 kcal/mol (4994.4457 without restraints) Performing minimization step: 289. Total energy = 4998.3932 kcal/mol (4989.9817 without restraints) Performing minimization step: 290. Total energy = 4993.9456 kcal/mol (4985.5378 without restraints) Performing minimization step: 291. Total energy = 4989.5173 kcal/mol (4981.1130 without restraints) Performing minimization step: 292. Total energy = 4985.1077 kcal/mol (4976.7069 without restraints) Performing minimization step: 293. Total energy = 4980.7179 kcal/mol (4972.3206 without restraints) Performing minimization step: 294. Total energy = 4976.3471 kcal/mol (4967.9533 without restraints) Performing minimization step: 295. Total energy = 4971.9954 kcal/mol (4963.6051 without restraints) Performing minimization step: 296. Total energy = 4967.6629 kcal/mol (4959.2761 without restraints) Performing minimization step: 297. Total energy = 4963.3486 kcal/mol (4954.9652 without restraints) Performing minimization step: 298. Total energy = 4959.0531 kcal/mol (4950.6733 without restraints) Performing minimization step: 299. Total energy = 4954.7759 kcal/mol (4946.3994 without restraints) Performing minimization step: 300. Total energy = 4950.5167 kcal/mol (4942.1437 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 301. Total energy = 4946.2760 kcal/mol (4937.9064 without restraints) Performing minimization step: 302. Total energy = 4942.0531 kcal/mol (4933.6870 without restraints) Performing minimization step: 303. Total energy = 4937.8480 kcal/mol (4929.4852 without restraints) Performing minimization step: 304. Total energy = 4933.6610 kcal/mol (4925.3015 without restraints) Performing minimization step: 305. Total energy = 4929.4917 kcal/mol (4921.1357 without restraints) Performing minimization step: 306. Total energy = 4925.3401 kcal/mol (4916.9875 without restraints) Performing minimization step: 307. Total energy = 4921.2067 kcal/mol (4912.8574 without restraints) Performing minimization step: 308. Total energy = 4917.0899 kcal/mol (4908.7440 without restraints) Performing minimization step: 309. Total energy = 4912.9899 kcal/mol (4904.6473 without restraints) Performing minimization step: 310. Total energy = 4908.9078 kcal/mol (4900.5685 without restraints) Performing minimization step: 311. Total energy = 4904.8425 kcal/mol (4896.5065 without restraints) Performing minimization step: 312. Total energy = 4900.7941 kcal/mol (4892.4616 without restraints) Performing minimization step: 313. Total energy = 4896.7626 kcal/mol (4888.4333 without restraints) Performing minimization step: 314. Total energy = 4892.7474 kcal/mol (4884.4213 without restraints) Performing minimization step: 315. Total energy = 4888.7490 kcal/mol (4880.4261 without restraints) Performing minimization step: 316. Total energy = 4884.7670 kcal/mol (4876.4474 without restraints) Performing minimization step: 317. Total energy = 4880.8015 kcal/mol (4872.4852 without restraints) Performing minimization step: 318. Total energy = 4876.8521 kcal/mol (4868.5390 without restraints) Performing minimization step: 319. Total energy = 4872.9187 kcal/mol (4864.6088 without restraints) Performing minimization step: 320. Total energy = 4869.0016 kcal/mol (4860.6950 without restraints) Performing minimization step: 321. Total energy = 4865.1004 kcal/mol (4856.7971 without restraints) Performing minimization step: 322. Total energy = 4861.2150 kcal/mol (4852.9148 without restraints) Performing minimization step: 323. Total energy = 4857.3453 kcal/mol (4849.0483 without restraints) Performing minimization step: 324. Total energy = 4853.4914 kcal/mol (4845.1975 without restraints) Performing minimization step: 325. Total energy = 4849.6531 kcal/mol (4841.3625 without restraints) Performing minimization step: 326. Total energy = 4845.8301 kcal/mol (4837.5428 without restraints) Performing minimization step: 327. Total energy = 4842.0225 kcal/mol (4833.7381 without restraints) Performing minimization step: 328. Total energy = 4838.2296 kcal/mol (4829.9484 without restraints) Performing minimization step: 329. Total energy = 4834.4528 kcal/mol (4826.1749 without restraints) Performing minimization step: 330. Total energy = 4830.6911 kcal/mol (4822.4160 without restraints) Performing minimization step: 331. Total energy = 4826.9439 kcal/mol (4818.6721 without restraints) Performing minimization step: 332. Total energy = 4823.2118 kcal/mol (4814.9432 without restraints) Performing minimization step: 333. Total energy = 4819.4944 kcal/mol (4811.2289 without restraints) Performing minimization step: 334. Total energy = 4815.7918 kcal/mol (4807.5293 without restraints) Performing minimization step: 335. Total energy = 4812.1037 kcal/mol (4803.8443 without restraints) Performing minimization step: 336. Total energy = 4808.4304 kcal/mol (4800.1743 without restraints) Performing minimization step: 337. Total energy = 4804.7715 kcal/mol (4796.5182 without restraints) Performing minimization step: 338. Total energy = 4801.1267 kcal/mol (4792.8765 without restraints) Performing minimization step: 339. Total energy = 4797.4965 kcal/mol (4789.2493 without restraints) Performing minimization step: 340. Total energy = 4793.8804 kcal/mol (4785.6362 without restraints) Performing minimization step: 341. Total energy = 4790.2783 kcal/mol (4782.0373 without restraints) Performing minimization step: 342. Total energy = 4786.6901 kcal/mol (4778.4521 without restraints) Performing minimization step: 343. Total energy = 4783.1162 kcal/mol (4774.8813 without restraints) Performing minimization step: 344. Total energy = 4779.5557 kcal/mol (4771.3238 without restraints) Performing minimization step: 345. Total energy = 4776.0094 kcal/mol (4767.7804 without restraints) Performing minimization step: 346. Total energy = 4772.4765 kcal/mol (4764.2502 without restraints) Performing minimization step: 347. Total energy = 4768.9570 kcal/mol (4760.7341 without restraints) Performing minimization step: 348. Total energy = 4765.4514 kcal/mol (4757.2315 without restraints) Performing minimization step: 349. Total energy = 4761.9591 kcal/mol (4753.7422 without restraints) Performing minimization step: 350. Total energy = 4758.4804 kcal/mol (4750.2666 without restraints) Performing minimization step: 351. Total energy = 4755.0148 kcal/mol (4746.8038 without restraints) Performing minimization step: 352. Total energy = 4751.5625 kcal/mol (4743.3545 without restraints) Performing minimization step: 353. Total energy = 4748.1234 kcal/mol (4739.9184 without restraints) Performing minimization step: 354. Total energy = 4744.6975 kcal/mol (4736.4955 without restraints) Performing minimization step: 355. Total energy = 4741.2846 kcal/mol (4733.0855 without restraints) Performing minimization step: 356. Total energy = 4737.8845 kcal/mol (4729.6883 without restraints) Performing minimization step: 357. Total energy = 4734.4975 kcal/mol (4726.3043 without restraints) Performing minimization step: 358. Total energy = 4731.1233 kcal/mol (4722.9330 without restraints) Performing minimization step: 359. Total energy = 4727.7621 kcal/mol (4719.5747 without restraints) Performing minimization step: 360. Total energy = 4724.4132 kcal/mol (4716.2289 without restraints) Performing minimization step: 361. Total energy = 4721.0771 kcal/mol (4712.8956 without restraints) Performing minimization step: 362. Total energy = 4717.7535 kcal/mol (4709.5748 without restraints) Performing minimization step: 363. Total energy = 4714.4422 kcal/mol (4706.2666 without restraints) Performing minimization step: 364. Total energy = 4711.1435 kcal/mol (4702.9707 without restraints) Performing minimization step: 365. Total energy = 4707.8570 kcal/mol (4699.6871 without restraints) Performing minimization step: 366. Total energy = 4704.5832 kcal/mol (4696.4161 without restraints) Performing minimization step: 367. Total energy = 4701.3215 kcal/mol (4693.1574 without restraints) Performing minimization step: 368. Total energy = 4698.0721 kcal/mol (4689.9109 without restraints) Performing minimization step: 369. Total energy = 4694.8344 kcal/mol (4686.6760 without restraints) Performing minimization step: 370. Total energy = 4691.6081 kcal/mol (4683.4527 without restraints) Performing minimization step: 371. Total energy = 4688.3951 kcal/mol (4680.2427 without restraints) Performing minimization step: 372. Total energy = 4685.1941 kcal/mol (4677.0445 without restraints) Performing minimization step: 373. Total energy = 4682.0046 kcal/mol (4673.8577 without restraints) Performing minimization step: 374. Total energy = 4678.8271 kcal/mol (4670.6831 without restraints) Performing minimization step: 375. Total energy = 4675.6608 kcal/mol (4667.5197 without restraints) Performing minimization step: 376. Total energy = 4672.5067 kcal/mol (4664.3685 without restraints) Performing minimization step: 377. Total energy = 4669.3641 kcal/mol (4661.2289 without restraints) Performing minimization step: 378. Total energy = 4666.2334 kcal/mol (4658.1009 without restraints) Performing minimization step: 379. Total energy = 4663.1139 kcal/mol (4654.9842 without restraints) Performing minimization step: 380. Total energy = 4660.0059 kcal/mol (4651.8790 without restraints) Performing minimization step: 381. Total energy = 4656.9094 kcal/mol (4648.7854 without restraints) Performing minimization step: 382. Total energy = 4653.8241 kcal/mol (4645.7029 without restraints) Performing minimization step: 383. Total energy = 4650.7504 kcal/mol (4642.6320 without restraints) Performing minimization step: 384. Total energy = 4647.6877 kcal/mol (4639.5722 without restraints) Performing minimization step: 385. Total energy = 4644.6357 kcal/mol (4636.5229 without restraints) Performing minimization step: 386. Total energy = 4641.5957 kcal/mol (4633.4858 without restraints) Performing minimization step: 387. Total energy = 4638.5666 kcal/mol (4630.4594 without restraints) Performing minimization step: 388. Total energy = 4635.5483 kcal/mol (4627.4440 without restraints) Performing minimization step: 389. Total energy = 4632.5406 kcal/mol (4624.4392 without restraints) Performing minimization step: 390. Total energy = 4629.5447 kcal/mol (4621.4459 without restraints) Performing minimization step: 391. Total energy = 4626.5594 kcal/mol (4618.4636 without restraints) Performing minimization step: 392. Total energy = 4623.5853 kcal/mol (4615.4922 without restraints) Performing minimization step: 393. Total energy = 4620.6216 kcal/mol (4612.5315 without restraints) Performing minimization step: 394. Total energy = 4617.6689 kcal/mol (4609.5814 without restraints) Performing minimization step: 395. Total energy = 4614.7267 kcal/mol (4606.6419 without restraints) Performing minimization step: 396. Total energy = 4611.7952 kcal/mol (4603.7132 without restraints) Performing minimization step: 397. Total energy = 4608.8747 kcal/mol (4600.7957 without restraints) Performing minimization step: 398. Total energy = 4605.9648 kcal/mol (4597.8885 without restraints) Performing minimization step: 399. Total energy = 4603.0658 kcal/mol (4594.9922 without restraints) Performing minimization step: 400. Total energy = 4600.1768 kcal/mol (4592.1060 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 401. Total energy = 4597.2985 kcal/mol (4589.2308 without restraints) Performing minimization step: 402. Total energy = 4594.4308 kcal/mol (4586.3657 without restraints) Performing minimization step: 403. Total energy = 4591.5734 kcal/mol (4583.5110 without restraints) Performing minimization step: 404. Total energy = 4588.7259 kcal/mol (4580.6662 without restraints) Performing minimization step: 405. Total energy = 4585.8888 kcal/mol (4577.8319 without restraints) Performing minimization step: 406. Total energy = 4583.0620 kcal/mol (4575.0079 without restraints) Performing minimization step: 407. Total energy = 4580.2459 kcal/mol (4572.1945 without restraints) Performing minimization step: 408. Total energy = 4577.4393 kcal/mol (4569.3907 without restraints) Performing minimization step: 409. Total energy = 4574.6432 kcal/mol (4566.5975 without restraints) Performing minimization step: 410. Total energy = 4571.8583 kcal/mol (4563.8152 without restraints) Performing minimization step: 411. Total energy = 4569.0826 kcal/mol (4561.0424 without restraints) Performing minimization step: 412. Total energy = 4566.3160 kcal/mol (4558.2785 without restraints) Performing minimization step: 413. Total energy = 4563.5592 kcal/mol (4555.5244 without restraints) Performing minimization step: 414. Total energy = 4560.8137 kcal/mol (4552.7817 without restraints) Performing minimization step: 415. Total energy = 4558.0770 kcal/mol (4550.0477 without restraints) Performing minimization step: 416. Total energy = 4555.3511 kcal/mol (4547.3247 without restraints) Performing minimization step: 417. Total energy = 4552.6343 kcal/mol (4544.6104 without restraints) Performing minimization step: 418. Total energy = 4549.9271 kcal/mol (4541.9060 without restraints) Performing minimization step: 419. Total energy = 4547.2299 kcal/mol (4539.2116 without restraints) Performing minimization step: 420. Total energy = 4544.5423 kcal/mol (4536.5267 without restraints) Performing minimization step: 421. Total energy = 4541.8643 kcal/mol (4533.8515 without restraints) Performing minimization step: 422. Total energy = 4539.1965 kcal/mol (4531.1865 without restraints) Performing minimization step: 423. Total energy = 4536.5377 kcal/mol (4528.5304 without restraints) Performing minimization step: 424. Total energy = 4533.8885 kcal/mol (4525.8840 without restraints) Performing minimization step: 425. Total energy = 4531.2489 kcal/mol (4523.2471 without restraints) Performing minimization step: 426. Total energy = 4528.6187 kcal/mol (4520.6196 without restraints) Performing minimization step: 427. Total energy = 4525.9975 kcal/mol (4518.0011 without restraints) Performing minimization step: 428. Total energy = 4523.3858 kcal/mol (4515.3920 without restraints) Performing minimization step: 429. Total energy = 4520.7835 kcal/mol (4512.7925 without restraints) Performing minimization step: 430. Total energy = 4518.1906 kcal/mol (4510.2024 without restraints) Performing minimization step: 431. Total energy = 4515.6072 kcal/mol (4507.6221 without restraints) Performing minimization step: 432. Total energy = 4513.0333 kcal/mol (4505.0506 without restraints) Performing minimization step: 433. Total energy = 4510.4681 kcal/mol (4502.4882 without restraints) Performing minimization step: 434. Total energy = 4507.9116 kcal/mol (4499.9342 without restraints) Performing minimization step: 435. Total energy = 4505.3647 kcal/mol (4497.3902 without restraints) Performing minimization step: 436. Total energy = 4502.8267 kcal/mol (4494.8548 without restraints) Performing minimization step: 437. Total energy = 4500.2979 kcal/mol (4492.3290 without restraints) Performing minimization step: 438. Total energy = 4497.7784 kcal/mol (4489.8123 without restraints) Performing minimization step: 439. Total energy = 4495.2680 kcal/mol (4487.3044 without restraints) Performing minimization step: 440. Total energy = 4492.7662 kcal/mol (4484.8053 without restraints) Performing minimization step: 441. Total energy = 4490.2731 kcal/mol (4482.3151 without restraints) Performing minimization step: 442. Total energy = 4487.7899 kcal/mol (4479.8345 without restraints) Performing minimization step: 443. Total energy = 4485.3148 kcal/mol (4477.3622 without restraints) Performing minimization step: 444. Total energy = 4482.8490 kcal/mol (4474.8991 without restraints) Performing minimization step: 445. Total energy = 4480.3916 kcal/mol (4472.4444 without restraints) Performing minimization step: 446. Total energy = 4477.9431 kcal/mol (4469.9987 without restraints) Performing minimization step: 447. Total energy = 4475.5035 kcal/mol (4467.5617 without restraints) Performing minimization step: 448. Total energy = 4473.0725 kcal/mol (4465.1335 without restraints) Performing minimization step: 449. Total energy = 4470.6500 kcal/mol (4462.7137 without restraints) Performing minimization step: 450. Total energy = 4468.2360 kcal/mol (4460.3024 without restraints) Performing minimization step: 451. Total energy = 4465.8305 kcal/mol (4457.8997 without restraints) Performing minimization step: 452. Total energy = 4463.4343 kcal/mol (4455.5062 without restraints) Performing minimization step: 453. Total energy = 4461.0462 kcal/mol (4453.1208 without restraints) Performing minimization step: 454. Total energy = 4458.6671 kcal/mol (4450.7444 without restraints) Performing minimization step: 455. Total energy = 4456.2962 kcal/mol (4448.3762 without restraints) Performing minimization step: 456. Total energy = 4453.9335 kcal/mol (4446.0162 without restraints) Performing minimization step: 457. Total energy = 4451.5797 kcal/mol (4443.6652 without restraints) Performing minimization step: 458. Total energy = 4449.2343 kcal/mol (4441.3225 without restraints) Performing minimization step: 459. Total energy = 4446.8971 kcal/mol (4438.9881 without restraints) Performing minimization step: 460. Total energy = 4444.5683 kcal/mol (4436.6620 without restraints) Performing minimization step: 461. Total energy = 4442.2477 kcal/mol (4434.3441 without restraints) Performing minimization step: 462. Total energy = 4439.9355 kcal/mol (4432.0347 without restraints) Performing minimization step: 463. Total energy = 4437.6314 kcal/mol (4429.7332 without restraints) Performing minimization step: 464. Total energy = 4435.3352 kcal/mol (4427.4398 without restraints) Performing minimization step: 465. Total energy = 4433.0473 kcal/mol (4425.1546 without restraints) Performing minimization step: 466. Total energy = 4430.7681 kcal/mol (4422.8783 without restraints) Performing minimization step: 467. Total energy = 4428.4969 kcal/mol (4420.6095 without restraints) Performing minimization step: 468. Total energy = 4426.2335 kcal/mol (4418.3488 without restraints) Performing minimization step: 469. Total energy = 4423.9783 kcal/mol (4416.0965 without restraints) Performing minimization step: 470. Total energy = 4421.7313 kcal/mol (4413.8522 without restraints) Performing minimization step: 471. Total energy = 4419.4924 kcal/mol (4411.6161 without restraints) Performing minimization step: 472. Total energy = 4417.2609 kcal/mol (4409.3873 without restraints) Performing minimization step: 473. Total energy = 4415.0379 kcal/mol (4407.1671 without restraints) Performing minimization step: 474. Total energy = 4412.8228 kcal/mol (4404.9546 without restraints) Performing minimization step: 475. Total energy = 4410.6160 kcal/mol (4402.7506 without restraints) Performing minimization step: 476. Total energy = 4408.4168 kcal/mol (4400.5541 without restraints) Performing minimization step: 477. Total energy = 4406.2253 kcal/mol (4398.3653 without restraints) Performing minimization step: 478. Total energy = 4404.0414 kcal/mol (4396.1842 without restraints) Performing minimization step: 479. Total energy = 4401.8649 kcal/mol (4394.0105 without restraints) Performing minimization step: 480. Total energy = 4399.6967 kcal/mol (4391.8449 without restraints) Performing minimization step: 481. Total energy = 4397.5360 kcal/mol (4389.6867 without restraints) Performing minimization step: 482. Total energy = 4395.3831 kcal/mol (4387.5367 without restraints) Performing minimization step: 483. Total energy = 4393.2381 kcal/mol (4385.3945 without restraints) Performing minimization step: 484. Total energy = 4391.1007 kcal/mol (4383.2598 without restraints) Performing minimization step: 485. Total energy = 4388.9708 kcal/mol (4381.1327 without restraints) Performing minimization step: 486. Total energy = 4386.8486 kcal/mol (4379.0132 without restraints) Performing minimization step: 487. Total energy = 4384.7340 kcal/mol (4376.9015 without restraints) Performing minimization step: 488. Total energy = 4382.6270 kcal/mol (4374.7972 without restraints) Performing minimization step: 489. Total energy = 4380.5275 kcal/mol (4372.7003 without restraints) Performing minimization step: 490. Total energy = 4378.4353 kcal/mol (4370.6108 without restraints) Performing minimization step: 491. Total energy = 4376.3501 kcal/mol (4368.5284 without restraints) Performing minimization step: 492. Total energy = 4374.2732 kcal/mol (4366.4543 without restraints) Performing minimization step: 493. Total energy = 4372.2034 kcal/mol (4364.3872 without restraints) Performing minimization step: 494. Total energy = 4370.1411 kcal/mol (4362.3276 without restraints) Performing minimization step: 495. Total energy = 4368.0861 kcal/mol (4360.2754 without restraints) Performing minimization step: 496. Total energy = 4366.0380 kcal/mol (4358.2299 without restraints) Performing minimization step: 497. Total energy = 4363.9974 kcal/mol (4356.1921 without restraints) Performing minimization step: 498. Total energy = 4361.9641 kcal/mol (4354.1616 without restraints) Performing minimization step: 499. Total energy = 4359.9375 kcal/mol (4352.1377 without restraints) Performing minimization step: 500. Total energy = 4357.9183 kcal/mol (4350.1212 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 501. Total energy = 4355.9063 kcal/mol (4348.1120 without restraints) Performing minimization step: 502. Total energy = 4353.9023 kcal/mol (4346.1108 without restraints) Performing minimization step: 503. Total energy = 4351.9051 kcal/mol (4344.1163 without restraints) Performing minimization step: 504. Total energy = 4349.9142 kcal/mol (4342.1282 without restraints) Performing minimization step: 505. Total energy = 4347.9316 kcal/mol (4340.1483 without restraints) Performing minimization step: 506. Total energy = 4345.9555 kcal/mol (4338.1750 without restraints) Performing minimization step: 507. Total energy = 4343.9865 kcal/mol (4336.2087 without restraints) Performing minimization step: 508. Total energy = 4342.0246 kcal/mol (4334.2495 without restraints) Performing minimization step: 509. Total energy = 4340.0696 kcal/mol (4332.2973 without restraints) Performing minimization step: 510. Total energy = 4338.1211 kcal/mol (4330.3516 without restraints) Performing minimization step: 511. Total energy = 4336.1801 kcal/mol (4328.4133 without restraints) Performing minimization step: 512. Total energy = 4334.2467 kcal/mol (4326.4827 without restraints) Performing minimization step: 513. Total energy = 4332.3196 kcal/mol (4324.5583 without restraints) Performing minimization step: 514. Total energy = 4330.3993 kcal/mol (4322.6408 without restraints) Performing minimization step: 515. Total energy = 4328.4856 kcal/mol (4320.7300 without restraints) Performing minimization step: 516. Total energy = 4326.5787 kcal/mol (4318.8257 without restraints) Performing minimization step: 517. Total energy = 4324.6784 kcal/mol (4316.9281 without restraints) Performing minimization step: 518. Total energy = 4322.7852 kcal/mol (4315.0379 without restraints) Performing minimization step: 519. Total energy = 4320.8991 kcal/mol (4313.1543 without restraints) Performing minimization step: 520. Total energy = 4319.0189 kcal/mol (4311.2770 without restraints) Performing minimization step: 521. Total energy = 4317.1458 kcal/mol (4309.4067 without restraints) Performing minimization step: 522. Total energy = 4315.2793 kcal/mol (4307.5427 without restraints) Performing minimization step: 523. Total energy = 4313.4193 kcal/mol (4305.6856 without restraints) Performing minimization step: 524. Total energy = 4311.5657 kcal/mol (4303.8350 without restraints) Performing minimization step: 525. Total energy = 4309.7196 kcal/mol (4301.9915 without restraints) Performing minimization step: 526. Total energy = 4307.8794 kcal/mol (4300.1541 without restraints) Performing minimization step: 527. Total energy = 4306.0459 kcal/mol (4298.3233 without restraints) Performing minimization step: 528. Total energy = 4304.2186 kcal/mol (4296.4988 without restraints) Performing minimization step: 529. Total energy = 4302.3976 kcal/mol (4294.6805 without restraints) Performing minimization step: 530. Total energy = 4300.5836 kcal/mol (4292.8694 without restraints) Performing minimization step: 531. Total energy = 4298.7759 kcal/mol (4291.0643 without restraints) Performing minimization step: 532. Total energy = 4296.9746 kcal/mol (4289.2659 without restraints) Performing minimization step: 533. Total energy = 4295.1797 kcal/mol (4287.4738 without restraints) Performing minimization step: 534. Total energy = 4293.3913 kcal/mol (4285.6882 without restraints) Performing minimization step: 535. Total energy = 4291.6094 kcal/mol (4283.9091 without restraints) Performing minimization step: 536. Total energy = 4289.8337 kcal/mol (4282.1361 without restraints) Performing minimization step: 537. Total energy = 4288.0642 kcal/mol (4280.3694 without restraints) Performing minimization step: 538. Total energy = 4286.3010 kcal/mol (4278.6091 without restraints) Performing minimization step: 539. Total energy = 4284.5441 kcal/mol (4276.8549 without restraints) Performing minimization step: 540. Total energy = 4282.7933 kcal/mol (4275.1069 without restraints) Performing minimization step: 541. Total energy = 4281.0485 kcal/mol (4273.3649 without restraints) Performing minimization step: 542. Total energy = 4279.3102 kcal/mol (4271.6295 without restraints) Performing minimization step: 543. Total energy = 4277.5782 kcal/mol (4269.9003 without restraints) Performing minimization step: 544. Total energy = 4275.8517 kcal/mol (4268.1765 without restraints) Performing minimization step: 545. Total energy = 4274.1312 kcal/mol (4266.4588 without restraints) Performing minimization step: 546. Total energy = 4272.4169 kcal/mol (4264.7474 without restraints) Performing minimization step: 547. Total energy = 4270.7088 kcal/mol (4263.0419 without restraints) Performing minimization step: 548. Total energy = 4269.0074 kcal/mol (4261.3437 without restraints) Performing minimization step: 549. Total energy = 4267.3118 kcal/mol (4259.6507 without restraints) Performing minimization step: 550. Total energy = 4265.6218 kcal/mol (4257.9634 without restraints) Performing minimization step: 551. Total energy = 4263.9383 kcal/mol (4256.2828 without restraints) Performing minimization step: 552. Total energy = 4262.2603 kcal/mol (4254.6076 without restraints) Performing minimization step: 553. Total energy = 4260.5881 kcal/mol (4252.9383 without restraints) Performing minimization step: 554. Total energy = 4258.9224 kcal/mol (4251.2753 without restraints) Performing minimization step: 555. Total energy = 4257.2621 kcal/mol (4249.6177 without restraints) Performing minimization step: 556. Total energy = 4255.6078 kcal/mol (4247.9663 without restraints) Performing minimization step: 557. Total energy = 4253.9595 kcal/mol (4246.3208 without restraints) Performing minimization step: 558. Total energy = 4252.3172 kcal/mol (4244.6814 without restraints) Performing minimization step: 559. Total energy = 4250.6805 kcal/mol (4243.0474 without restraints) Performing minimization step: 560. Total energy = 4249.0493 kcal/mol (4241.4191 without restraints) Performing minimization step: 561. Total energy = 4247.4239 kcal/mol (4239.7966 without restraints) Performing minimization step: 562. Total energy = 4245.8035 kcal/mol (4238.1788 without restraints) Performing minimization step: 563. Total energy = 4244.1896 kcal/mol (4236.5679 without restraints) Performing minimization step: 564. Total energy = 4242.5809 kcal/mol (4234.9620 without restraints) Performing minimization step: 565. Total energy = 4240.9787 kcal/mol (4233.3629 without restraints) Performing minimization step: 566. Total energy = 4239.3815 kcal/mol (4231.7684 without restraints) Performing minimization step: 567. Total energy = 4237.7905 kcal/mol (4230.1801 without restraints) Performing minimization step: 568. Total energy = 4236.2049 kcal/mol (4228.5974 without restraints) Performing minimization step: 569. Total energy = 4234.6247 kcal/mol (4227.0200 without restraints) Performing minimization step: 570. Total energy = 4233.0504 kcal/mol (4225.4486 without restraints) Performing minimization step: 571. Total energy = 4231.4814 kcal/mol (4223.8824 without restraints) Performing minimization step: 572. Total energy = 4229.9180 kcal/mol (4222.3219 without restraints) Performing minimization step: 573. Total energy = 4228.3599 kcal/mol (4220.7667 without restraints) Performing minimization step: 574. Total energy = 4226.8073 kcal/mol (4219.2169 without restraints) Performing minimization step: 575. Total energy = 4225.2598 kcal/mol (4217.6722 without restraints) Performing minimization step: 576. Total energy = 4223.7183 kcal/mol (4216.1335 without restraints) Performing minimization step: 577. Total energy = 4222.1819 kcal/mol (4214.6001 without restraints) Performing minimization step: 578. Total energy = 4220.6514 kcal/mol (4213.0724 without restraints) Performing minimization step: 579. Total energy = 4219.1254 kcal/mol (4211.5491 without restraints) Performing minimization step: 580. Total energy = 4217.6050 kcal/mol (4210.0317 without restraints) Performing minimization step: 581. Total energy = 4216.0901 kcal/mol (4208.5196 without restraints) Performing minimization step: 582. Total energy = 4214.5806 kcal/mol (4207.0130 without restraints) Performing minimization step: 583. Total energy = 4213.0766 kcal/mol (4205.5119 without restraints) Performing minimization step: 584. Total energy = 4211.5780 kcal/mol (4204.0161 without restraints) Performing minimization step: 585. Total energy = 4210.0841 kcal/mol (4202.5251 without restraints) Performing minimization step: 586. Total energy = 4208.5955 kcal/mol (4201.0395 without restraints) Performing minimization step: 587. Total energy = 4207.1120 kcal/mol (4199.5588 without restraints) Performing minimization step: 588. Total energy = 4205.6338 kcal/mol (4198.0835 without restraints) Performing minimization step: 589. Total energy = 4204.1607 kcal/mol (4196.6132 without restraints) Performing minimization step: 590. Total energy = 4202.6934 kcal/mol (4195.1488 without restraints) Performing minimization step: 591. Total energy = 4201.2303 kcal/mol (4193.6886 without restraints) Performing minimization step: 592. Total energy = 4199.7722 kcal/mol (4192.2333 without restraints) Performing minimization step: 593. Total energy = 4198.3195 kcal/mol (4190.7838 without restraints) Performing minimization step: 594. Total energy = 4196.8719 kcal/mol (4189.3390 without restraints) Performing minimization step: 595. Total energy = 4195.4289 kcal/mol (4187.8987 without restraints) Performing minimization step: 596. Total energy = 4193.9909 kcal/mol (4186.4636 without restraints) Performing minimization step: 597. Total energy = 4192.5587 kcal/mol (4185.0343 without restraints) Performing minimization step: 598. Total energy = 4191.1308 kcal/mol (4183.6093 without restraints) Performing minimization step: 599. Total energy = 4189.7081 kcal/mol (4182.1896 without restraints) Performing minimization step: 600. Total energy = 4188.2902 kcal/mol (4180.7745 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 601. Total energy = 4186.8773 kcal/mol (4179.3646 without restraints) Performing minimization step: 602. Total energy = 4185.4691 kcal/mol (4177.9591 without restraints) Performing minimization step: 603. Total energy = 4184.0657 kcal/mol (4176.5587 without restraints) Performing minimization step: 604. Total energy = 4182.6670 kcal/mol (4175.1630 without restraints) Performing minimization step: 605. Total energy = 4181.2734 kcal/mol (4173.7723 without restraints) Performing minimization step: 606. Total energy = 4179.8845 kcal/mol (4172.3862 without restraints) Performing minimization step: 607. Total energy = 4178.5008 kcal/mol (4171.0055 without restraints) Performing minimization step: 608. Total energy = 4177.1216 kcal/mol (4169.6292 without restraints) Performing minimization step: 609. Total energy = 4175.7471 kcal/mol (4168.2576 without restraints) Performing minimization step: 610. Total energy = 4174.3769 kcal/mol (4166.8902 without restraints) Performing minimization step: 611. Total energy = 4173.0116 kcal/mol (4165.5279 without restraints) Performing minimization step: 612. Total energy = 4171.6510 kcal/mol (4164.1703 without restraints) Performing minimization step: 613. Total energy = 4170.2953 kcal/mol (4162.8175 without restraints) Performing minimization step: 614. Total energy = 4168.9440 kcal/mol (4161.4692 without restraints) Performing minimization step: 615. Total energy = 4167.5973 kcal/mol (4160.1251 without restraints) Performing minimization step: 616. Total energy = 4166.2553 kcal/mol (4158.7863 without restraints) Performing minimization step: 617. Total energy = 4164.9181 kcal/mol (4157.4520 without restraints) Performing minimization step: 618. Total energy = 4163.5856 kcal/mol (4156.1226 without restraints) Performing minimization step: 619. Total energy = 4162.2575 kcal/mol (4154.7973 without restraints) Performing minimization step: 620. Total energy = 4160.9337 kcal/mol (4153.4765 without restraints) Performing minimization step: 621. Total energy = 4159.6150 kcal/mol (4152.1605 without restraints) Performing minimization step: 622. Total energy = 4158.3004 kcal/mol (4150.8491 without restraints) Performing minimization step: 623. Total energy = 4156.9904 kcal/mol (4149.5420 without restraints) Performing minimization step: 624. Total energy = 4155.6854 kcal/mol (4148.2400 without restraints) Performing minimization step: 625. Total energy = 4154.3838 kcal/mol (4146.9413 without restraints) Performing minimization step: 626. Total energy = 4153.0871 kcal/mol (4145.6474 without restraints) Performing minimization step: 627. Total energy = 4151.7949 kcal/mol (4144.3584 without restraints) Performing minimization step: 628. Total energy = 4150.5076 kcal/mol (4143.0740 without restraints) Performing minimization step: 629. Total energy = 4149.2243 kcal/mol (4141.7936 without restraints) Performing minimization step: 630. Total energy = 4147.9450 kcal/mol (4140.5172 without restraints) Performing minimization step: 631. Total energy = 4146.6699 kcal/mol (4139.2450 without restraints) Performing minimization step: 632. Total energy = 4145.3991 kcal/mol (4137.9773 without restraints) Performing minimization step: 633. Total energy = 4144.1328 kcal/mol (4136.7141 without restraints) Performing minimization step: 634. Total energy = 4142.8710 kcal/mol (4135.4551 without restraints) Performing minimization step: 635. Total energy = 4141.6132 kcal/mol (4134.2004 without restraints) Performing minimization step: 636. Total energy = 4140.3597 kcal/mol (4132.9498 without restraints) Performing minimization step: 637. Total energy = 4139.1105 kcal/mol (4131.7035 without restraints) Performing minimization step: 638. Total energy = 4137.8656 kcal/mol (4130.4616 without restraints) Performing minimization step: 639. Total energy = 4136.6249 kcal/mol (4129.2240 without restraints) Performing minimization step: 640. Total energy = 4135.3882 kcal/mol (4127.9902 without restraints) Performing minimization step: 641. Total energy = 4134.1555 kcal/mol (4126.7605 without restraints) Performing minimization step: 642. Total energy = 4132.9270 kcal/mol (4125.5349 without restraints) Performing minimization step: 643. Total energy = 4131.7026 kcal/mol (4124.3135 without restraints) Performing minimization step: 644. Total energy = 4130.4822 kcal/mol (4123.0961 without restraints) Performing minimization step: 645. Total energy = 4129.2659 kcal/mol (4121.8828 without restraints) Performing minimization step: 646. Total energy = 4128.0537 kcal/mol (4120.6736 without restraints) Performing minimization step: 647. Total energy = 4126.8460 kcal/mol (4119.4690 without restraints) Performing minimization step: 648. Total energy = 4125.6420 kcal/mol (4118.2680 without restraints) Performing minimization step: 649. Total energy = 4124.4421 kcal/mol (4117.0710 without restraints) Performing minimization step: 650. Total energy = 4123.2458 kcal/mol (4115.8777 without restraints) Performing minimization step: 651. Total energy = 4122.0538 kcal/mol (4114.6887 without restraints) Performing minimization step: 652. Total energy = 4120.8654 kcal/mol (4113.5032 without restraints) Performing minimization step: 653. Total energy = 4119.6811 kcal/mol (4112.3221 without restraints) Performing minimization step: 654. Total energy = 4118.5008 kcal/mol (4111.1448 without restraints) Performing minimization step: 655. Total energy = 4117.3247 kcal/mol (4109.9716 without restraints) Performing minimization step: 656. Total energy = 4116.1523 kcal/mol (4108.8023 without restraints) Performing minimization step: 657. Total energy = 4114.9837 kcal/mol (4107.6367 without restraints) Performing minimization step: 658. Total energy = 4113.8189 kcal/mol (4106.4749 without restraints) Performing minimization step: 659. Total energy = 4112.6579 kcal/mol (4105.3169 without restraints) Performing minimization step: 660. Total energy = 4111.5007 kcal/mol (4104.1627 without restraints) Performing minimization step: 661. Total energy = 4110.3472 kcal/mol (4103.0123 without restraints) Performing minimization step: 662. Total energy = 4109.1974 kcal/mol (4101.8655 without restraints) Performing minimization step: 663. Total energy = 4108.0517 kcal/mol (4100.7228 without restraints) Performing minimization step: 664. Total energy = 4106.9093 kcal/mol (4099.5834 without restraints) Performing minimization step: 665. Total energy = 4105.7708 kcal/mol (4098.4479 without restraints) Performing minimization step: 666. Total energy = 4104.6360 kcal/mol (4097.3162 without restraints) Performing minimization step: 667. Total energy = 4103.5050 kcal/mol (4096.1883 without restraints) Performing minimization step: 668. Total energy = 4102.3774 kcal/mol (4095.0637 without restraints) Performing minimization step: 669. Total energy = 4101.2534 kcal/mol (4093.9427 without restraints) Performing minimization step: 670. Total energy = 4100.1335 kcal/mol (4092.8260 without restraints) Performing minimization step: 671. Total energy = 4099.0172 kcal/mol (4091.7126 without restraints) Performing minimization step: 672. Total energy = 4097.9043 kcal/mol (4090.6026 without restraints) Performing minimization step: 673. Total energy = 4096.7948 kcal/mol (4089.4962 without restraints) Performing minimization step: 674. Total energy = 4095.6891 kcal/mol (4088.3936 without restraints) Performing minimization step: 675. Total energy = 4094.5863 kcal/mol (4087.2939 without restraints) Performing minimization step: 676. Total energy = 4093.4877 kcal/mol (4086.1983 without restraints) Performing minimization step: 677. Total energy = 4092.3927 kcal/mol (4085.1064 without restraints) Performing minimization step: 678. Total energy = 4091.3015 kcal/mol (4084.0182 without restraints) Performing minimization step: 679. Total energy = 4090.2137 kcal/mol (4082.9336 without restraints) Performing minimization step: 680. Total energy = 4089.1293 kcal/mol (4081.8522 without restraints) Performing minimization step: 681. Total energy = 4088.0485 kcal/mol (4080.7743 without restraints) Performing minimization step: 682. Total energy = 4086.9706 kcal/mol (4079.6996 without restraints) Performing minimization step: 683. Total energy = 4085.8970 kcal/mol (4078.6289 without restraints) Performing minimization step: 684. Total energy = 4084.8258 kcal/mol (4077.5609 without restraints) Performing minimization step: 685. Total energy = 4083.7583 kcal/mol (4076.4966 without restraints) Performing minimization step: 686. Total energy = 4082.6945 kcal/mol (4075.4357 without restraints) Performing minimization step: 687. Total energy = 4081.6337 kcal/mol (4074.3780 without restraints) Performing minimization step: 688. Total energy = 4080.5766 kcal/mol (4073.3240 without restraints) Performing minimization step: 689. Total energy = 4079.5227 kcal/mol (4072.2732 without restraints) Performing minimization step: 690. Total energy = 4078.4722 kcal/mol (4071.2256 without restraints) Performing minimization step: 691. Total energy = 4077.4248 kcal/mol (4070.1814 without restraints) Performing minimization step: 692. Total energy = 4076.3812 kcal/mol (4069.1409 without restraints) Performing minimization step: 693. Total energy = 4075.3402 kcal/mol (4068.1030 without restraints) Performing minimization step: 694. Total energy = 4074.3024 kcal/mol (4067.0683 without restraints) Performing minimization step: 695. Total energy = 4073.2686 kcal/mol (4066.0376 without restraints) Performing minimization step: 696. Total energy = 4072.2373 kcal/mol (4065.0093 without restraints) Performing minimization step: 697. Total energy = 4071.2094 kcal/mol (4063.9847 without restraints) Performing minimization step: 698. Total energy = 4070.1852 kcal/mol (4062.9634 without restraints) Performing minimization step: 699. Total energy = 4069.1630 kcal/mol (4061.9443 without restraints) Performing minimization step: 700. Total energy = 4068.1446 kcal/mol (4060.9291 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 701. Total energy = 4067.1297 kcal/mol (4059.9172 without restraints) Performing minimization step: 702. Total energy = 4066.1180 kcal/mol (4058.9086 without restraints) Performing minimization step: 703. Total energy = 4065.1091 kcal/mol (4057.9028 without restraints) Performing minimization step: 704. Total energy = 4064.1035 kcal/mol (4056.9003 without restraints) Performing minimization step: 705. Total energy = 4063.1008 kcal/mol (4055.9008 without restraints) Performing minimization step: 706. Total energy = 4062.1013 kcal/mol (4054.9041 without restraints) Performing minimization step: 707. Total energy = 4061.1047 kcal/mol (4053.9109 without restraints) Performing minimization step: 708. Total energy = 4060.1112 kcal/mol (4052.9205 without restraints) Performing minimization step: 709. Total energy = 4059.1212 kcal/mol (4051.9335 without restraints) Performing minimization step: 710. Total energy = 4058.1340 kcal/mol (4050.9494 without restraints) Performing minimization step: 711. Total energy = 4057.1493 kcal/mol (4049.9679 without restraints) Performing minimization step: 712. Total energy = 4056.1684 kcal/mol (4048.9902 without restraints) Performing minimization step: 713. Total energy = 4055.1903 kcal/mol (4048.0151 without restraints) Performing minimization step: 714. Total energy = 4054.2150 kcal/mol (4047.0429 without restraints) Performing minimization step: 715. Total energy = 4053.2430 kcal/mol (4046.0741 without restraints) Performing minimization step: 716. Total energy = 4052.2734 kcal/mol (4045.1075 without restraints) Performing minimization step: 717. Total energy = 4051.3072 kcal/mol (4044.1446 without restraints) Performing minimization step: 718. Total energy = 4050.3438 kcal/mol (4043.1842 without restraints) Performing minimization step: 719. Total energy = 4049.3831 kcal/mol (4042.2266 without restraints) Performing minimization step: 720. Total energy = 4048.4252 kcal/mol (4041.2719 without restraints) Performing minimization step: 721. Total energy = 4047.4709 kcal/mol (4040.3207 without restraints) Performing minimization step: 722. Total energy = 4046.5188 kcal/mol (4039.3717 without restraints) Performing minimization step: 723. Total energy = 4045.5689 kcal/mol (4038.4249 without restraints) Performing minimization step: 724. Total energy = 4044.6225 kcal/mol (4037.4815 without restraints) Performing minimization step: 725. Total energy = 4043.6791 kcal/mol (4036.5417 without restraints) Performing minimization step: 726. Total energy = 4042.7385 kcal/mol (4035.6041 without restraints) Performing minimization step: 727. Total energy = 4041.8004 kcal/mol (4034.6688 without restraints) Performing minimization step: 728. Total energy = 4040.8649 kcal/mol (4033.7366 without restraints) Performing minimization step: 729. Total energy = 4039.9322 kcal/mol (4032.8070 without restraints) Performing minimization step: 730. Total energy = 4039.0022 kcal/mol (4031.8800 without restraints) Performing minimization step: 731. Total energy = 4038.0751 kcal/mol (4030.9562 without restraints) Performing minimization step: 732. Total energy = 4037.1509 kcal/mol (4030.0352 without restraints) Performing minimization step: 733. Total energy = 4036.2301 kcal/mol (4029.1175 without restraints) Performing minimization step: 734. Total energy = 4035.3111 kcal/mol (4028.2017 without restraints) Performing minimization step: 735. Total energy = 4034.3950 kcal/mol (4027.2887 without restraints) Performing minimization step: 736. Total energy = 4033.4812 kcal/mol (4026.3781 without restraints) Performing minimization step: 737. Total energy = 4032.5705 kcal/mol (4025.4705 without restraints) Performing minimization step: 738. Total energy = 4031.6621 kcal/mol (4024.5653 without restraints) Performing minimization step: 739. Total energy = 4030.7564 kcal/mol (4023.6627 without restraints) Performing minimization step: 740. Total energy = 4029.8534 kcal/mol (4022.7628 without restraints) Performing minimization step: 741. Total energy = 4028.9529 kcal/mol (4021.8655 without restraints) Performing minimization step: 742. Total energy = 4028.0552 kcal/mol (4020.9709 without restraints) Performing minimization step: 743. Total energy = 4027.1600 kcal/mol (4020.0789 without restraints) Performing minimization step: 744. Total energy = 4026.2675 kcal/mol (4019.1896 without restraints) Performing minimization step: 745. Total energy = 4025.3769 kcal/mol (4018.3020 without restraints) Performing minimization step: 746. Total energy = 4024.4893 kcal/mol (4017.4177 without restraints) Performing minimization step: 747. Total energy = 4023.6044 kcal/mol (4016.5359 without restraints) Performing minimization step: 748. Total energy = 4022.7222 kcal/mol (4015.6571 without restraints) Performing minimization step: 749. Total energy = 4021.8425 kcal/mol (4014.7803 without restraints) Performing minimization step: 750. Total energy = 4020.9651 kcal/mol (4013.9060 without restraints) Performing minimization step: 751. Total energy = 4020.0900 kcal/mol (4013.0341 without restraints) Performing minimization step: 752. Total energy = 4019.2177 kcal/mol (4012.1650 without restraints) Performing minimization step: 753. Total energy = 4018.3475 kcal/mol (4011.2981 without restraints) Performing minimization step: 754. Total energy = 4017.4796 kcal/mol (4010.4333 without restraints) Performing minimization step: 755. Total energy = 4016.6142 kcal/mol (4009.5711 without restraints) Performing minimization step: 756. Total energy = 4015.7517 kcal/mol (4008.7117 without restraints) Performing minimization step: 757. Total energy = 4014.8917 kcal/mol (4007.8549 without restraints) Performing minimization step: 758. Total energy = 4014.0342 kcal/mol (4007.0006 without restraints) Performing minimization step: 759. Total energy = 4013.1786 kcal/mol (4006.1481 without restraints) Performing minimization step: 760. Total energy = 4012.3252 kcal/mol (4005.2978 without restraints) Performing minimization step: 761. Total energy = 4011.4745 kcal/mol (4004.4504 without restraints) Performing minimization step: 762. Total energy = 4010.6260 kcal/mol (4003.6051 without restraints) Performing minimization step: 763. Total energy = 4009.7802 kcal/mol (4002.7625 without restraints) Performing minimization step: 764. Total energy = 4008.9362 kcal/mol (4001.9215 without restraints) Performing minimization step: 765. Total energy = 4008.0943 kcal/mol (4001.0828 without restraints) Performing minimization step: 766. Total energy = 4007.2555 kcal/mol (4000.2473 without restraints) Performing minimization step: 767. Total energy = 4006.4186 kcal/mol (3999.4135 without restraints) Performing minimization step: 768. Total energy = 4005.5840 kcal/mol (3998.5821 without restraints) Performing minimization step: 769. Total energy = 4004.7516 kcal/mol (3997.7529 without restraints) Performing minimization step: 770. Total energy = 4003.9213 kcal/mol (3996.9256 without restraints) Performing minimization step: 771. Total energy = 4003.0934 kcal/mol (3996.1009 without restraints) Performing minimization step: 772. Total energy = 4002.2675 kcal/mol (3995.2783 without restraints) Performing minimization step: 773. Total energy = 4001.4439 kcal/mol (3994.4579 without restraints) Performing minimization step: 774. Total energy = 4000.6229 kcal/mol (3993.6400 without restraints) Performing minimization step: 775. Total energy = 3999.8033 kcal/mol (3992.8237 without restraints) Performing minimization step: 776. Total energy = 3998.9868 kcal/mol (3992.0103 without restraints) Performing minimization step: 777. Total energy = 3998.1721 kcal/mol (3991.1986 without restraints) Performing minimization step: 778. Total energy = 3997.3595 kcal/mol (3990.3894 without restraints) Performing minimization step: 779. Total energy = 3996.5493 kcal/mol (3989.5826 without restraints) Performing minimization step: 780. Total energy = 3995.7414 kcal/mol (3988.7776 without restraints) Performing minimization step: 781. Total energy = 3994.9359 kcal/mol (3987.9754 without restraints) Performing minimization step: 782. Total energy = 3994.1323 kcal/mol (3987.1750 without restraints) Performing minimization step: 783. Total energy = 3993.3304 kcal/mol (3986.3763 without restraints) Performing minimization step: 784. Total energy = 3992.5308 kcal/mol (3985.5798 without restraints) Performing minimization step: 785. Total energy = 3991.7335 kcal/mol (3984.7856 without restraints) Performing minimization step: 786. Total energy = 3990.9380 kcal/mol (3983.9935 without restraints) Performing minimization step: 787. Total energy = 3990.1452 kcal/mol (3983.2038 without restraints) Performing minimization step: 788. Total energy = 3989.3544 kcal/mol (3982.4162 without restraints) Performing minimization step: 789. Total energy = 3988.5654 kcal/mol (3981.6303 without restraints) Performing minimization step: 790. Total energy = 3987.7781 kcal/mol (3980.8463 without restraints) Performing minimization step: 791. Total energy = 3986.9930 kcal/mol (3980.0641 without restraints) Performing minimization step: 792. Total energy = 3986.2098 kcal/mol (3979.2843 without restraints) Performing minimization step: 793. Total energy = 3985.4284 kcal/mol (3978.5062 without restraints) Performing minimization step: 794. Total energy = 3984.6497 kcal/mol (3977.7306 without restraints) Performing minimization step: 795. Total energy = 3983.8727 kcal/mol (3976.9568 without restraints) Performing minimization step: 796. Total energy = 3983.0981 kcal/mol (3976.1856 without restraints) Performing minimization step: 797. Total energy = 3982.3252 kcal/mol (3975.4157 without restraints) Performing minimization step: 798. Total energy = 3981.5548 kcal/mol (3974.6486 without restraints) Performing minimization step: 799. Total energy = 3980.7858 kcal/mol (3973.8827 without restraints) Performing minimization step: 800. Total energy = 3980.0186 kcal/mol (3973.1187 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 801. Total energy = 3979.2533 kcal/mol (3972.3563 without restraints) Performing minimization step: 802. Total energy = 3978.4897 kcal/mol (3971.5962 without restraints) Performing minimization step: 803. Total energy = 3977.7277 kcal/mol (3970.8375 without restraints) Performing minimization step: 804. Total energy = 3976.9685 kcal/mol (3970.0813 without restraints) Performing minimization step: 805. Total energy = 3976.2107 kcal/mol (3969.3268 without restraints) Performing minimization step: 806. Total energy = 3975.4552 kcal/mol (3968.5745 without restraints) Performing minimization step: 807. Total energy = 3974.7012 kcal/mol (3967.8236 without restraints) Performing minimization step: 808. Total energy = 3973.9493 kcal/mol (3967.0750 without restraints) Performing minimization step: 809. Total energy = 3973.1994 kcal/mol (3966.3282 without restraints) Performing minimization step: 810. Total energy = 3972.4515 kcal/mol (3965.5835 without restraints) Performing minimization step: 811. Total energy = 3971.7054 kcal/mol (3964.8406 without restraints) Performing minimization step: 812. Total energy = 3970.9610 kcal/mol (3964.0993 without restraints) Performing minimization step: 813. Total energy = 3970.2185 kcal/mol (3963.3602 without restraints) Performing minimization step: 814. Total energy = 3969.4783 kcal/mol (3962.6231 without restraints) Performing minimization step: 815. Total energy = 3968.7395 kcal/mol (3961.8875 without restraints) Performing minimization step: 816. Total energy = 3968.0021 kcal/mol (3961.1533 without restraints) Performing minimization step: 817. Total energy = 3967.2665 kcal/mol (3960.4208 without restraints) Performing minimization step: 818. Total energy = 3966.5328 kcal/mol (3959.6903 without restraints) Performing minimization step: 819. Total energy = 3965.8012 kcal/mol (3958.9619 without restraints) Performing minimization step: 820. Total energy = 3965.0713 kcal/mol (3958.2354 without restraints) Performing minimization step: 821. Total energy = 3964.3429 kcal/mol (3957.5101 without restraints) Performing minimization step: 822. Total energy = 3963.6162 kcal/mol (3956.7865 without restraints) Performing minimization step: 823. Total energy = 3962.8914 kcal/mol (3956.0650 without restraints) Performing minimization step: 824. Total energy = 3962.1683 kcal/mol (3955.3451 without restraints) Performing minimization step: 825. Total energy = 3961.4473 kcal/mol (3954.6272 without restraints) Performing minimization step: 826. Total energy = 3960.7281 kcal/mol (3953.9112 without restraints) Performing minimization step: 827. Total energy = 3960.0102 kcal/mol (3953.1965 without restraints) Performing minimization step: 828. Total energy = 3959.2945 kcal/mol (3952.4841 without restraints) Performing minimization step: 829. Total energy = 3958.5804 kcal/mol (3951.7733 without restraints) Performing minimization step: 830. Total energy = 3957.8679 kcal/mol (3951.0638 without restraints) Performing minimization step: 831. Total energy = 3957.1574 kcal/mol (3950.3565 without restraints) Performing minimization step: 832. Total energy = 3956.4483 kcal/mol (3949.6507 without restraints) Performing minimization step: 833. Total energy = 3955.7408 kcal/mol (3948.9463 without restraints) Performing minimization step: 834. Total energy = 3955.0347 kcal/mol (3948.2434 without restraints) Performing minimization step: 835. Total energy = 3954.3304 kcal/mol (3947.5423 without restraints) Performing minimization step: 836. Total energy = 3953.6275 kcal/mol (3946.8425 without restraints) Performing minimization step: 837. Total energy = 3952.9262 kcal/mol (3946.1444 without restraints) Performing minimization step: 838. Total energy = 3952.2266 kcal/mol (3945.4480 without restraints) Performing minimization step: 839. Total energy = 3951.5291 kcal/mol (3944.7539 without restraints) Performing minimization step: 840. Total energy = 3950.8330 kcal/mol (3944.0606 without restraints) Performing minimization step: 841. Total energy = 3950.1384 kcal/mol (3943.3695 without restraints) Performing minimization step: 842. Total energy = 3949.4457 kcal/mol (3942.6800 without restraints) Performing minimization step: 843. Total energy = 3948.7544 kcal/mol (3941.9919 without restraints) Performing minimization step: 844. Total energy = 3948.0647 kcal/mol (3941.3054 without restraints) Performing minimization step: 845. Total energy = 3947.3767 kcal/mol (3940.6205 without restraints) Performing minimization step: 846. Total energy = 3946.6895 kcal/mol (3939.9365 without restraints) Performing minimization step: 847. Total energy = 3946.0044 kcal/mol (3939.2544 without restraints) Performing minimization step: 848. Total energy = 3945.3202 kcal/mol (3938.5735 without restraints) Performing minimization step: 849. Total energy = 3944.6380 kcal/mol (3937.8946 without restraints) Performing minimization step: 850. Total energy = 3943.9575 kcal/mol (3937.2172 without restraints) Performing minimization step: 851. Total energy = 3943.2786 kcal/mol (3936.5417 without restraints) Performing minimization step: 852. Total energy = 3942.6015 kcal/mol (3935.8676 without restraints) Performing minimization step: 853. Total energy = 3941.9258 kcal/mol (3935.1952 without restraints) Performing minimization step: 854. Total energy = 3941.2518 kcal/mol (3934.5243 without restraints) Performing minimization step: 855. Total energy = 3940.5789 kcal/mol (3933.8545 without restraints) Performing minimization step: 856. Total energy = 3939.9076 kcal/mol (3933.1864 without restraints) Performing minimization step: 857. Total energy = 3939.2379 kcal/mol (3932.5201 without restraints) Performing minimization step: 858. Total energy = 3938.5703 kcal/mol (3931.8555 without restraints) Performing minimization step: 859. Total energy = 3937.9033 kcal/mol (3931.1917 without restraints) Performing minimization step: 860. Total energy = 3937.2377 kcal/mol (3930.5293 without restraints) Performing minimization step: 861. Total energy = 3936.5740 kcal/mol (3929.8688 without restraints) Performing minimization step: 862. Total energy = 3935.9118 kcal/mol (3929.2098 without restraints) Performing minimization step: 863. Total energy = 3935.2510 kcal/mol (3928.5522 without restraints) Performing minimization step: 864. Total energy = 3934.5919 kcal/mol (3927.8961 without restraints) Performing minimization step: 865. Total energy = 3933.9341 kcal/mol (3927.2417 without restraints) Performing minimization step: 866. Total energy = 3933.2776 kcal/mol (3926.5883 without restraints) Performing minimization step: 867. Total energy = 3932.6217 kcal/mol (3925.9355 without restraints) Performing minimization step: 868. Total energy = 3931.9677 kcal/mol (3925.2848 without restraints) Performing minimization step: 869. Total energy = 3931.3157 kcal/mol (3924.6359 without restraints) Performing minimization step: 870. Total energy = 3930.6651 kcal/mol (3923.9886 without restraints) Performing minimization step: 871. Total energy = 3930.0164 kcal/mol (3923.3432 without restraints) Performing minimization step: 872. Total energy = 3929.3686 kcal/mol (3922.6983 without restraints) Performing minimization step: 873. Total energy = 3928.7220 kcal/mol (3922.0549 without restraints) Performing minimization step: 874. Total energy = 3928.0775 kcal/mol (3921.4136 without restraints) Performing minimization step: 875. Total energy = 3927.4336 kcal/mol (3920.7729 without restraints) Performing minimization step: 876. Total energy = 3926.7915 kcal/mol (3920.1339 without restraints) Performing minimization step: 877. Total energy = 3926.1507 kcal/mol (3919.4965 without restraints) Performing minimization step: 878. Total energy = 3925.5115 kcal/mol (3918.8602 without restraints) Performing minimization step: 879. Total energy = 3924.8735 kcal/mol (3918.2254 without restraints) Performing minimization step: 880. Total energy = 3924.2366 kcal/mol (3917.5916 without restraints) Performing minimization step: 881. Total energy = 3923.6011 kcal/mol (3916.9594 without restraints) Performing minimization step: 882. Total energy = 3922.9668 kcal/mol (3916.3282 without restraints) Performing minimization step: 883. Total energy = 3922.3341 kcal/mol (3915.6989 without restraints) Performing minimization step: 884. Total energy = 3921.7027 kcal/mol (3915.0703 without restraints) Performing minimization step: 885. Total energy = 3921.0725 kcal/mol (3914.4434 without restraints) Performing minimization step: 886. Total energy = 3920.4440 kcal/mol (3913.8180 without restraints) Performing minimization step: 887. Total energy = 3919.8164 kcal/mol (3913.1937 without restraints) Performing minimization step: 888. Total energy = 3919.1899 kcal/mol (3912.5702 without restraints) Performing minimization step: 889. Total energy = 3918.5649 kcal/mol (3911.9485 without restraints) Performing minimization step: 890. Total energy = 3917.9411 kcal/mol (3911.3276 without restraints) Performing minimization step: 891. Total energy = 3917.3185 kcal/mol (3910.7084 without restraints) Performing minimization step: 892. Total energy = 3916.6974 kcal/mol (3910.0904 without restraints) Performing minimization step: 893. Total energy = 3916.0776 kcal/mol (3909.4739 without restraints) Performing minimization step: 894. Total energy = 3915.4595 kcal/mol (3908.8589 without restraints) Performing minimization step: 895. Total energy = 3914.8429 kcal/mol (3908.2456 without restraints) Performing minimization step: 896. Total energy = 3914.2278 kcal/mol (3907.6336 without restraints) Performing minimization step: 897. Total energy = 3913.6132 kcal/mol (3907.0222 without restraints) Performing minimization step: 898. Total energy = 3913.0001 kcal/mol (3906.4121 without restraints) Performing minimization step: 899. Total energy = 3912.3883 kcal/mol (3905.8034 without restraints) Performing minimization step: 900. Total energy = 3911.7771 kcal/mol (3905.1954 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 901. Total energy = 3911.1670 kcal/mol (3904.5886 without restraints) Performing minimization step: 902. Total energy = 3910.5589 kcal/mol (3903.9836 without restraints) Performing minimization step: 903. Total energy = 3909.9511 kcal/mol (3903.3789 without restraints) Performing minimization step: 904. Total energy = 3909.3455 kcal/mol (3902.7764 without restraints) Performing minimization step: 905. Total energy = 3908.7407 kcal/mol (3902.1747 without restraints) Performing minimization step: 906. Total energy = 3908.1373 kcal/mol (3901.5744 without restraints) Performing minimization step: 907. Total energy = 3907.5349 kcal/mol (3900.9752 without restraints) Performing minimization step: 908. Total energy = 3906.9342 kcal/mol (3900.3777 without restraints) Performing minimization step: 909. Total energy = 3906.3342 kcal/mol (3899.7808 without restraints) Performing minimization step: 910. Total energy = 3905.7359 kcal/mol (3899.1857 without restraints) Performing minimization step: 911. Total energy = 3905.1390 kcal/mol (3898.5920 without restraints) Performing minimization step: 912. Total energy = 3904.5429 kcal/mol (3897.9988 without restraints) Performing minimization step: 913. Total energy = 3903.9476 kcal/mol (3897.4067 without restraints) Performing minimization step: 914. Total energy = 3903.3542 kcal/mol (3896.8165 without restraints) Performing minimization step: 915. Total energy = 3902.7617 kcal/mol (3896.2272 without restraints) Performing minimization step: 916. Total energy = 3902.1703 kcal/mol (3895.6388 without restraints) Performing minimization step: 917. Total energy = 3901.5801 kcal/mol (3895.0518 without restraints) Performing minimization step: 918. Total energy = 3900.9907 kcal/mol (3894.4654 without restraints) Performing minimization step: 919. Total energy = 3900.4026 kcal/mol (3893.8805 without restraints) Performing minimization step: 920. Total energy = 3899.8156 kcal/mol (3893.2967 without restraints) Performing minimization step: 921. Total energy = 3899.2295 kcal/mol (3892.7137 without restraints) Performing minimization step: 922. Total energy = 3898.6444 kcal/mol (3892.1317 without restraints) Performing minimization step: 923. Total energy = 3898.0615 kcal/mol (3891.5520 without restraints) Performing minimization step: 924. Total energy = 3897.4794 kcal/mol (3890.9729 without restraints) Performing minimization step: 925. Total energy = 3896.8986 kcal/mol (3890.3953 without restraints) Performing minimization step: 926. Total energy = 3896.3179 kcal/mol (3889.8175 without restraints) Performing minimization step: 927. Total energy = 3895.7387 kcal/mol (3889.2416 without restraints) Performing minimization step: 928. Total energy = 3895.1609 kcal/mol (3888.6668 without restraints) Performing minimization step: 929. Total energy = 3894.5843 kcal/mol (3888.0935 without restraints) Performing minimization step: 930. Total energy = 3894.0091 kcal/mol (3887.5213 without restraints) Performing minimization step: 931. Total energy = 3893.4346 kcal/mol (3886.9498 without restraints) Performing minimization step: 932. Total energy = 3892.8607 kcal/mol (3886.3792 without restraints) Performing minimization step: 933. Total energy = 3892.2888 kcal/mol (3885.8103 without restraints) Performing minimization step: 934. Total energy = 3891.7183 kcal/mol (3885.2431 without restraints) Performing minimization step: 935. Total energy = 3891.1481 kcal/mol (3884.6757 without restraints) Performing minimization step: 936. Total energy = 3890.5791 kcal/mol (3884.1099 without restraints) Performing minimization step: 937. Total energy = 3890.0112 kcal/mol (3883.5452 without restraints) Performing minimization step: 938. Total energy = 3889.4443 kcal/mol (3882.9814 without restraints) Performing minimization step: 939. Total energy = 3888.8784 kcal/mol (3882.4186 without restraints) Performing minimization step: 940. Total energy = 3888.3137 kcal/mol (3881.8570 without restraints) Performing minimization step: 941. Total energy = 3887.7503 kcal/mol (3881.2969 without restraints) Performing minimization step: 942. Total energy = 3887.1876 kcal/mol (3880.7370 without restraints) Performing minimization step: 943. Total energy = 3886.6263 kcal/mol (3880.1789 without restraints) Performing minimization step: 944. Total energy = 3886.0660 kcal/mol (3879.6216 without restraints) Performing minimization step: 945. Total energy = 3885.5063 kcal/mol (3879.0651 without restraints) Performing minimization step: 946. Total energy = 3884.9485 kcal/mol (3878.5105 without restraints) Performing minimization step: 947. Total energy = 3884.3916 kcal/mol (3877.9566 without restraints) Performing minimization step: 948. Total energy = 3883.8357 kcal/mol (3877.4038 without restraints) Performing minimization step: 949. Total energy = 3883.2805 kcal/mol (3876.8517 without restraints) Performing minimization step: 950. Total energy = 3882.7264 kcal/mol (3876.3008 without restraints) Performing minimization step: 951. Total energy = 3882.1732 kcal/mol (3875.7506 without restraints) Performing minimization step: 952. Total energy = 3881.6206 kcal/mol (3875.2010 without restraints) Performing minimization step: 953. Total energy = 3881.0697 kcal/mol (3874.6532 without restraints) Performing minimization step: 954. Total energy = 3880.5197 kcal/mol (3874.1063 without restraints) Performing minimization step: 955. Total energy = 3879.9708 kcal/mol (3873.5605 without restraints) Performing minimization step: 956. Total energy = 3879.4228 kcal/mol (3873.0155 without restraints) Performing minimization step: 957. Total energy = 3878.8758 kcal/mol (3872.4716 without restraints) Performing minimization step: 958. Total energy = 3878.3294 kcal/mol (3871.9283 without restraints) Performing minimization step: 959. Total energy = 3877.7844 kcal/mol (3871.3865 without restraints) Performing minimization step: 960. Total energy = 3877.2403 kcal/mol (3870.8454 without restraints) Performing minimization step: 961. Total energy = 3876.6970 kcal/mol (3870.3051 without restraints) Performing minimization step: 962. Total energy = 3876.1547 kcal/mol (3869.7658 without restraints) Performing minimization step: 963. Total energy = 3875.6135 kcal/mol (3869.2278 without restraints) Performing minimization step: 964. Total energy = 3875.0733 kcal/mol (3868.6908 without restraints) Performing minimization step: 965. Total energy = 3874.5343 kcal/mol (3868.1547 without restraints) Performing minimization step: 966. Total energy = 3873.9958 kcal/mol (3867.6192 without restraints) Performing minimization step: 967. Total energy = 3873.4582 kcal/mol (3867.0846 without restraints) Performing minimization step: 968. Total energy = 3872.9219 kcal/mol (3866.5516 without restraints) Performing minimization step: 969. Total energy = 3872.3867 kcal/mol (3866.0194 without restraints) Performing minimization step: 970. Total energy = 3871.8522 kcal/mol (3865.4879 without restraints) Performing minimization step: 971. Total energy = 3871.3186 kcal/mol (3864.9573 without restraints) Performing minimization step: 972. Total energy = 3870.7861 kcal/mol (3864.4279 without restraints) Performing minimization step: 973. Total energy = 3870.2548 kcal/mol (3863.8998 without restraints) Performing minimization step: 974. Total energy = 3869.7239 kcal/mol (3863.3718 without restraints) Performing minimization step: 975. Total energy = 3869.1948 kcal/mol (3862.8459 without restraints) Performing minimization step: 976. Total energy = 3868.6663 kcal/mol (3862.3203 without restraints) Performing minimization step: 977. Total energy = 3868.1385 kcal/mol (3861.7956 without restraints) Performing minimization step: 978. Total energy = 3867.6118 kcal/mol (3861.2718 without restraints) Performing minimization step: 979. Total energy = 3867.0858 kcal/mol (3860.7490 without restraints) Performing minimization step: 980. Total energy = 3866.5608 kcal/mol (3860.2271 without restraints) Performing minimization step: 981. Total energy = 3866.0370 kcal/mol (3859.7062 without restraints) Performing minimization step: 982. Total energy = 3865.5137 kcal/mol (3859.1860 without restraints) Performing minimization step: 983. Total energy = 3864.9911 kcal/mol (3858.6665 without restraints) Performing minimization step: 984. Total energy = 3864.4696 kcal/mol (3858.1480 without restraints) Performing minimization step: 985. Total energy = 3863.9495 kcal/mol (3857.6308 without restraints) Performing minimization step: 986. Total energy = 3863.4304 kcal/mol (3857.1148 without restraints) Performing minimization step: 987. Total energy = 3862.9118 kcal/mol (3856.5993 without restraints) Performing minimization step: 988. Total energy = 3862.3941 kcal/mol (3856.0846 without restraints) Performing minimization step: 989. Total energy = 3861.8768 kcal/mol (3855.5704 without restraints) Performing minimization step: 990. Total energy = 3861.3609 kcal/mol (3855.0574 without restraints) Performing minimization step: 991. Total energy = 3860.8459 kcal/mol (3854.5455 without restraints) Performing minimization step: 992. Total energy = 3860.3318 kcal/mol (3854.0344 without restraints) Performing minimization step: 993. Total energy = 3859.8186 kcal/mol (3853.5243 without restraints) Performing minimization step: 994. Total energy = 3859.3059 kcal/mol (3853.0145 without restraints) Performing minimization step: 995. Total energy = 3858.7943 kcal/mol (3852.5059 without restraints) Performing minimization step: 996. Total energy = 3858.2841 kcal/mol (3851.9988 without restraints) Performing minimization step: 997. Total energy = 3857.7744 kcal/mol (3851.4922 without restraints) Performing minimization step: 998. Total energy = 3857.2656 kcal/mol (3850.9864 without restraints) Performing minimization step: 999. Total energy = 3856.7579 kcal/mol (3850.4816 without restraints) Performing minimization step: 1000. Total energy = 3856.2507 kcal/mol (3849.9774 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 3855.7443 kcal/mol (3849.4741 without restraints) Performing minimization step: 1002. Total energy = 3855.2389 kcal/mol (3848.9716 without restraints) Performing minimization step: 1003. Total energy = 3854.7342 kcal/mol (3848.4701 without restraints) Performing minimization step: 1004. Total energy = 3854.2304 kcal/mol (3847.9692 without restraints) Performing minimization step: 1005. Total energy = 3853.7274 kcal/mol (3847.4694 without restraints) Performing minimization step: 1006. Total energy = 3853.2255 kcal/mol (3846.9703 without restraints) Performing minimization step: 1007. Total energy = 3852.7239 kcal/mol (3846.4717 without restraints) Performing minimization step: 1008. Total energy = 3852.2233 kcal/mol (3845.9741 without restraints) Performing minimization step: 1009. Total energy = 3851.7239 kcal/mol (3845.4777 without restraints) Performing minimization step: 1010. Total energy = 3851.2246 kcal/mol (3844.9814 without restraints) Performing minimization step: 1011. Total energy = 3850.7265 kcal/mol (3844.4863 without restraints) Performing minimization step: 1012. Total energy = 3850.2292 kcal/mol (3843.9919 without restraints) Performing minimization step: 1013. Total energy = 3849.7324 kcal/mol (3843.4982 without restraints) Performing minimization step: 1014. Total energy = 3849.2370 kcal/mol (3843.0057 without restraints) Performing minimization step: 1015. Total energy = 3848.7424 kcal/mol (3842.5140 without restraints) Performing minimization step: 1016. Total energy = 3848.2484 kcal/mol (3842.0232 without restraints) Performing minimization step: 1017. Total energy = 3847.7552 kcal/mol (3841.5329 without restraints) Performing minimization step: 1018. Total energy = 3847.2632 kcal/mol (3841.0440 without restraints) Performing minimization step: 1019. Total energy = 3846.7720 kcal/mol (3840.5557 without restraints) Performing minimization step: 1020. Total energy = 3846.2815 kcal/mol (3840.0682 without restraints) Performing minimization step: 1021. Total energy = 3845.7918 kcal/mol (3839.5814 without restraints) Performing minimization step: 1022. Total energy = 3845.3028 kcal/mol (3839.0954 without restraints) Performing minimization step: 1023. Total energy = 3844.8144 kcal/mol (3838.6100 without restraints) Performing minimization step: 1024. Total energy = 3844.3271 kcal/mol (3838.1257 without restraints) Performing minimization step: 1025. Total energy = 3843.8405 kcal/mol (3837.6420 without restraints) Performing minimization step: 1026. Total energy = 3843.3547 kcal/mol (3837.1591 without restraints) Performing minimization step: 1027. Total energy = 3842.8694 kcal/mol (3836.6767 without restraints) Performing minimization step: 1028. Total energy = 3842.3848 kcal/mol (3836.1951 without restraints) Performing minimization step: 1029. Total energy = 3841.9010 kcal/mol (3835.7145 without restraints) Performing minimization step: 1030. Total energy = 3841.4185 kcal/mol (3835.2348 without restraints) Performing minimization step: 1031. Total energy = 3840.9371 kcal/mol (3834.7564 without restraints) Performing minimization step: 1032. Total energy = 3840.4561 kcal/mol (3834.2783 without restraints) Performing minimization step: 1033. Total energy = 3839.9754 kcal/mol (3833.8006 without restraints) Performing minimization step: 1034. Total energy = 3839.4960 kcal/mol (3833.3242 without restraints) Performing minimization step: 1035. Total energy = 3839.0173 kcal/mol (3832.8484 without restraints) Performing minimization step: 1036. Total energy = 3838.5392 kcal/mol (3832.3731 without restraints) Performing minimization step: 1037. Total energy = 3838.0617 kcal/mol (3831.8987 without restraints) Performing minimization step: 1038. Total energy = 3837.5851 kcal/mol (3831.4250 without restraints) Performing minimization step: 1039. Total energy = 3837.1092 kcal/mol (3830.9521 without restraints) Performing minimization step: 1040. Total energy = 3836.6342 kcal/mol (3830.4800 without restraints) Performing minimization step: 1041. Total energy = 3836.1599 kcal/mol (3830.0087 without restraints) Performing minimization step: 1042. Total energy = 3835.6863 kcal/mol (3829.5380 without restraints) Performing minimization step: 1043. Total energy = 3835.2139 kcal/mol (3829.0685 without restraints) Performing minimization step: 1044. Total energy = 3834.7419 kcal/mol (3828.5995 without restraints) Performing minimization step: 1045. Total energy = 3834.2705 kcal/mol (3828.1311 without restraints) Performing minimization step: 1046. Total energy = 3833.8000 kcal/mol (3827.6635 without restraints) Performing minimization step: 1047. Total energy = 3833.3305 kcal/mol (3827.1969 without restraints) Performing minimization step: 1048. Total energy = 3832.8619 kcal/mol (3826.7312 without restraints) Performing minimization step: 1049. Total energy = 3832.3934 kcal/mol (3826.2655 without restraints) Performing minimization step: 1050. Total energy = 3831.9255 kcal/mol (3825.8007 without restraints) Performing minimization step: 1051. Total energy = 3831.4581 kcal/mol (3825.3361 without restraints) Performing minimization step: 1052. Total energy = 3830.9922 kcal/mol (3824.8733 without restraints) Performing minimization step: 1053. Total energy = 3830.5265 kcal/mol (3824.4104 without restraints) Performing minimization step: 1054. Total energy = 3830.0616 kcal/mol (3823.9484 without restraints) Performing minimization step: 1055. Total energy = 3829.5971 kcal/mol (3823.4868 without restraints) Performing minimization step: 1056. Total energy = 3829.1333 kcal/mol (3823.0261 without restraints) Performing minimization step: 1057. Total energy = 3828.6707 kcal/mol (3822.5664 without restraints) Performing minimization step: 1058. Total energy = 3828.2089 kcal/mol (3822.1074 without restraints) Performing minimization step: 1059. Total energy = 3827.7477 kcal/mol (3821.6491 without restraints) Performing minimization step: 1060. Total energy = 3827.2873 kcal/mol (3821.1917 without restraints) Performing minimization step: 1061. Total energy = 3826.8273 kcal/mol (3820.7347 without restraints) Performing minimization step: 1062. Total energy = 3826.3682 kcal/mol (3820.2782 without restraints) Performing minimization step: 1063. Total energy = 3825.9096 kcal/mol (3819.8226 without restraints) Performing minimization step: 1064. Total energy = 3825.4521 kcal/mol (3819.3680 without restraints) Performing minimization step: 1065. Total energy = 3824.9951 kcal/mol (3818.9140 without restraints) Performing minimization step: 1066. Total energy = 3824.5392 kcal/mol (3818.4611 without restraints) Performing minimization step: 1067. Total energy = 3824.0836 kcal/mol (3818.0082 without restraints) Performing minimization step: 1068. Total energy = 3823.6289 kcal/mol (3817.5565 without restraints) Performing minimization step: 1069. Total energy = 3823.1750 kcal/mol (3817.1054 without restraints) Performing minimization step: 1070. Total energy = 3822.7214 kcal/mol (3816.6548 without restraints) Performing minimization step: 1071. Total energy = 3822.2690 kcal/mol (3816.2052 without restraints) Performing minimization step: 1072. Total energy = 3821.8171 kcal/mol (3815.7562 without restraints) Performing minimization step: 1073. Total energy = 3821.3658 kcal/mol (3815.3078 without restraints) Performing minimization step: 1074. Total energy = 3820.9155 kcal/mol (3814.8603 without restraints) Performing minimization step: 1075. Total energy = 3820.4653 kcal/mol (3814.4132 without restraints) Performing minimization step: 1076. Total energy = 3820.0157 kcal/mol (3813.9663 without restraints) Performing minimization step: 1077. Total energy = 3819.5666 kcal/mol (3813.5200 without restraints) Performing minimization step: 1078. Total energy = 3819.1181 kcal/mol (3813.0745 without restraints) Performing minimization step: 1079. Total energy = 3818.6706 kcal/mol (3812.6299 without restraints) Performing minimization step: 1080. Total energy = 3818.2237 kcal/mol (3812.1857 without restraints) Performing minimization step: 1081. Total energy = 3817.7770 kcal/mol (3811.7420 without restraints) Performing minimization step: 1082. Total energy = 3817.3310 kcal/mol (3811.2989 without restraints) Performing minimization step: 1083. Total energy = 3816.8861 kcal/mol (3810.8568 without restraints) Performing minimization step: 1084. Total energy = 3816.4420 kcal/mol (3810.4157 without restraints) Performing minimization step: 1085. Total energy = 3815.9984 kcal/mol (3809.9747 without restraints) Performing minimization step: 1086. Total energy = 3815.5547 kcal/mol (3809.5339 without restraints) Performing minimization step: 1087. Total energy = 3815.1124 kcal/mol (3809.0947 without restraints) Performing minimization step: 1088. Total energy = 3814.6712 kcal/mol (3808.6562 without restraints) Performing minimization step: 1089. Total energy = 3814.2303 kcal/mol (3808.2182 without restraints) Performing minimization step: 1090. Total energy = 3813.7898 kcal/mol (3807.7807 without restraints) Performing minimization step: 1091. Total energy = 3813.3501 kcal/mol (3807.3437 without restraints) Performing minimization step: 1092. Total energy = 3812.9110 kcal/mol (3806.9073 without restraints) Performing minimization step: 1093. Total energy = 3812.4725 kcal/mol (3806.4718 without restraints) Performing minimization step: 1094. Total energy = 3812.0347 kcal/mol (3806.0370 without restraints) Performing minimization step: 1095. Total energy = 3811.5979 kcal/mol (3805.6028 without restraints) Performing minimization step: 1096. Total energy = 3811.1614 kcal/mol (3805.1692 without restraints) Performing minimization step: 1097. Total energy = 3810.7257 kcal/mol (3804.7363 without restraints) Performing minimization step: 1098. Total energy = 3810.2907 kcal/mol (3804.3042 without restraints) Performing minimization step: 1099. Total energy = 3809.8558 kcal/mol (3803.8721 without restraints) Performing minimization step: 1100. Total energy = 3809.4219 kcal/mol (3803.4411 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 3808.9887 kcal/mol (3803.0107 without restraints) Performing minimization step: 1102. Total energy = 3808.5557 kcal/mol (3802.5804 without restraints) Performing minimization step: 1103. Total energy = 3808.1232 kcal/mol (3802.1508 without restraints) Performing minimization step: 1104. Total energy = 3807.6913 kcal/mol (3801.7218 without restraints) Performing minimization step: 1105. Total energy = 3807.2604 kcal/mol (3801.2938 without restraints) Performing minimization step: 1106. Total energy = 3806.8301 kcal/mol (3800.8663 without restraints) Performing minimization step: 1107. Total energy = 3806.4001 kcal/mol (3800.4392 without restraints) Performing minimization step: 1108. Total energy = 3805.9712 kcal/mol (3800.0130 without restraints) Performing minimization step: 1109. Total energy = 3805.5427 kcal/mol (3799.5874 without restraints) Performing minimization step: 1110. Total energy = 3805.1146 kcal/mol (3799.1621 without restraints) Performing minimization step: 1111. Total energy = 3804.6871 kcal/mol (3798.7373 without restraints) Performing minimization step: 1112. Total energy = 3804.2603 kcal/mol (3798.3134 without restraints) Performing minimization step: 1113. Total energy = 3803.8344 kcal/mol (3797.8903 without restraints) Performing minimization step: 1114. Total energy = 3803.4089 kcal/mol (3797.4676 without restraints) Performing minimization step: 1115. Total energy = 3802.9844 kcal/mol (3797.0458 without restraints) Performing minimization step: 1116. Total energy = 3802.5597 kcal/mol (3796.6240 without restraints) Performing minimization step: 1117. Total energy = 3802.1356 kcal/mol (3796.2027 without restraints) Performing minimization step: 1118. Total energy = 3801.7124 kcal/mol (3795.7822 without restraints) Performing minimization step: 1119. Total energy = 3801.2902 kcal/mol (3795.3630 without restraints) Performing minimization step: 1120. Total energy = 3800.8678 kcal/mol (3794.9433 without restraints) Performing minimization step: 1121. Total energy = 3800.4463 kcal/mol (3794.5246 without restraints) Performing minimization step: 1122. Total energy = 3800.0257 kcal/mol (3794.1068 without restraints) Performing minimization step: 1123. Total energy = 3799.6054 kcal/mol (3793.6892 without restraints) Performing minimization step: 1124. Total energy = 3799.1856 kcal/mol (3793.2722 without restraints) Performing minimization step: 1125. Total energy = 3798.7662 kcal/mol (3792.8558 without restraints) Performing minimization step: 1126. Total energy = 3798.3480 kcal/mol (3792.4404 without restraints) Performing minimization step: 1127. Total energy = 3797.9301 kcal/mol (3792.0252 without restraints) Performing minimization step: 1128. Total energy = 3797.5125 kcal/mol (3791.6103 without restraints) Performing minimization step: 1129. Total energy = 3797.0955 kcal/mol (3791.1960 without restraints) Performing minimization step: 1130. Total energy = 3796.6788 kcal/mol (3790.7822 without restraints) Performing minimization step: 1131. Total energy = 3796.2630 kcal/mol (3790.3693 without restraints) Performing minimization step: 1132. Total energy = 3795.8479 kcal/mol (3789.9571 without restraints) Performing minimization step: 1133. Total energy = 3795.4335 kcal/mol (3789.5453 without restraints) Performing minimization step: 1134. Total energy = 3795.0197 kcal/mol (3789.1343 without restraints) Performing minimization step: 1135. Total energy = 3794.6064 kcal/mol (3788.7237 without restraints) Performing minimization step: 1136. Total energy = 3794.1931 kcal/mol (3788.3133 without restraints) Performing minimization step: 1137. Total energy = 3793.7807 kcal/mol (3787.9036 without restraints) Performing minimization step: 1138. Total energy = 3793.3686 kcal/mol (3787.4942 without restraints) Performing minimization step: 1139. Total energy = 3792.9576 kcal/mol (3787.0860 without restraints) Performing minimization step: 1140. Total energy = 3792.5466 kcal/mol (3786.6778 without restraints) Performing minimization step: 1141. Total energy = 3792.1368 kcal/mol (3786.2708 without restraints) Performing minimization step: 1142. Total energy = 3791.7273 kcal/mol (3785.8641 without restraints) Performing minimization step: 1143. Total energy = 3791.3182 kcal/mol (3785.4576 without restraints) Performing minimization step: 1144. Total energy = 3790.9096 kcal/mol (3785.0519 without restraints) Performing minimization step: 1145. Total energy = 3790.5017 kcal/mol (3784.6466 without restraints) Performing minimization step: 1146. Total energy = 3790.0940 kcal/mol (3784.2418 without restraints) Performing minimization step: 1147. Total energy = 3789.6870 kcal/mol (3783.8376 without restraints) Performing minimization step: 1148. Total energy = 3789.2806 kcal/mol (3783.4339 without restraints) Performing minimization step: 1149. Total energy = 3788.8741 kcal/mol (3783.0300 without restraints) Performing minimization step: 1150. Total energy = 3788.4686 kcal/mol (3782.6273 without restraints) Performing minimization step: 1151. Total energy = 3788.0643 kcal/mol (3782.2258 without restraints) Performing minimization step: 1152. Total energy = 3787.6601 kcal/mol (3781.8244 without restraints) Performing minimization step: 1153. Total energy = 3787.2565 kcal/mol (3781.4235 without restraints) Performing minimization step: 1154. Total energy = 3786.8533 kcal/mol (3781.0231 without restraints) Performing minimization step: 1155. Total energy = 3786.4507 kcal/mol (3780.6232 without restraints) Performing minimization step: 1156. Total energy = 3786.0484 kcal/mol (3780.2236 without restraints) Performing minimization step: 1157. Total energy = 3785.6472 kcal/mol (3779.8251 without restraints) Performing minimization step: 1158. Total energy = 3785.2459 kcal/mol (3779.4266 without restraints) Performing minimization step: 1159. Total energy = 3784.8457 kcal/mol (3779.0291 without restraints) Performing minimization step: 1160. Total energy = 3784.4458 kcal/mol (3778.6320 without restraints) Performing minimization step: 1161. Total energy = 3784.0463 kcal/mol (3778.2352 without restraints) Performing minimization step: 1162. Total energy = 3783.6475 kcal/mol (3777.8391 without restraints) Performing minimization step: 1163. Total energy = 3783.2488 kcal/mol (3777.4432 without restraints) Performing minimization step: 1164. Total energy = 3782.8507 kcal/mol (3777.0478 without restraints) Performing minimization step: 1165. Total energy = 3782.4535 kcal/mol (3776.6533 without restraints) Performing minimization step: 1166. Total energy = 3782.0562 kcal/mol (3776.2588 without restraints) Performing minimization step: 1167. Total energy = 3781.6601 kcal/mol (3775.8654 without restraints) Performing minimization step: 1168. Total energy = 3781.2642 kcal/mol (3775.4723 without restraints) Performing minimization step: 1169. Total energy = 3780.8686 kcal/mol (3775.0793 without restraints) Performing minimization step: 1170. Total energy = 3780.4737 kcal/mol (3774.6871 without restraints) Performing minimization step: 1171. Total energy = 3780.0800 kcal/mol (3774.2962 without restraints) Performing minimization step: 1172. Total energy = 3779.6863 kcal/mol (3773.9051 without restraints) Performing minimization step: 1173. Total energy = 3779.2931 kcal/mol (3773.5146 without restraints) Performing minimization step: 1174. Total energy = 3778.9005 kcal/mol (3773.1247 without restraints) Performing minimization step: 1175. Total energy = 3778.5081 kcal/mol (3772.7350 without restraints) Performing minimization step: 1176. Total energy = 3778.1159 kcal/mol (3772.3454 without restraints) Performing minimization step: 1177. Total energy = 3777.7248 kcal/mol (3771.9570 without restraints) Performing minimization step: 1178. Total energy = 3777.3333 kcal/mol (3771.5683 without restraints) Performing minimization step: 1179. Total energy = 3776.9426 kcal/mol (3771.1803 without restraints) Performing minimization step: 1180. Total energy = 3776.5528 kcal/mol (3770.7932 without restraints) Performing minimization step: 1181. Total energy = 3776.1631 kcal/mol (3770.4062 without restraints) Performing minimization step: 1182. Total energy = 3775.7740 kcal/mol (3770.0199 without restraints) Performing minimization step: 1183. Total energy = 3775.3852 kcal/mol (3769.6337 without restraints) Performing minimization step: 1184. Total energy = 3774.9974 kcal/mol (3769.2486 without restraints) Performing minimization step: 1185. Total energy = 3774.6102 kcal/mol (3768.8641 without restraints) Performing minimization step: 1186. Total energy = 3774.2232 kcal/mol (3768.4798 without restraints) Performing minimization step: 1187. Total energy = 3773.8359 kcal/mol (3768.0952 without restraints) Performing minimization step: 1188. Total energy = 3773.4500 kcal/mol (3767.7120 without restraints) Performing minimization step: 1189. Total energy = 3773.0649 kcal/mol (3767.3296 without restraints) Performing minimization step: 1190. Total energy = 3772.6801 kcal/mol (3766.9475 without restraints) Performing minimization step: 1191. Total energy = 3772.2958 kcal/mol (3766.5658 without restraints) Performing minimization step: 1192. Total energy = 3771.9115 kcal/mol (3766.1841 without restraints) Performing minimization step: 1193. Total energy = 3771.5276 kcal/mol (3765.8029 without restraints) Performing minimization step: 1194. Total energy = 3771.1442 kcal/mol (3765.4222 without restraints) Performing minimization step: 1195. Total energy = 3770.7617 kcal/mol (3765.0423 without restraints) Performing minimization step: 1196. Total energy = 3770.3795 kcal/mol (3764.6628 without restraints) Performing minimization step: 1197. Total energy = 3769.9975 kcal/mol (3764.2836 without restraints) Performing minimization step: 1198. Total energy = 3769.6164 kcal/mol (3763.9051 without restraints) Performing minimization step: 1199. Total energy = 3769.2352 kcal/mol (3763.5266 without restraints) Performing minimization step: 1200. Total energy = 3768.8544 kcal/mol (3763.1484 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 3768.4746 kcal/mol (3762.7713 without restraints) Performing minimization step: 1202. Total energy = 3768.0951 kcal/mol (3762.3943 without restraints) Performing minimization step: 1203. Total energy = 3767.7153 kcal/mol (3762.0172 without restraints) Performing minimization step: 1204. Total energy = 3767.3369 kcal/mol (3761.6415 without restraints) Performing minimization step: 1205. Total energy = 3766.9589 kcal/mol (3761.2663 without restraints) Performing minimization step: 1206. Total energy = 3766.5816 kcal/mol (3760.8916 without restraints) Performing minimization step: 1207. Total energy = 3766.2042 kcal/mol (3760.5169 without restraints) Performing minimization step: 1208. Total energy = 3765.8268 kcal/mol (3760.1420 without restraints) Performing minimization step: 1209. Total energy = 3765.4508 kcal/mol (3759.7688 without restraints) Performing minimization step: 1210. Total energy = 3765.0743 kcal/mol (3759.3949 without restraints) Performing minimization step: 1211. Total energy = 3764.6988 kcal/mol (3759.0220 without restraints) Performing minimization step: 1212. Total energy = 3764.3239 kcal/mol (3758.6498 without restraints) Performing minimization step: 1213. Total energy = 3763.9494 kcal/mol (3758.2780 without restraints) Performing minimization step: 1214. Total energy = 3763.5760 kcal/mol (3757.9071 without restraints) Performing minimization step: 1215. Total energy = 3763.2020 kcal/mol (3757.5358 without restraints) Performing minimization step: 1216. Total energy = 3762.8288 kcal/mol (3757.1653 without restraints) Performing minimization step: 1217. Total energy = 3762.4563 kcal/mol (3756.7954 without restraints) Performing minimization step: 1218. Total energy = 3762.0837 kcal/mol (3756.4254 without restraints) Performing minimization step: 1219. Total energy = 3761.7120 kcal/mol (3756.0564 without restraints) Performing minimization step: 1220. Total energy = 3761.3408 kcal/mol (3755.6876 without restraints) Performing minimization step: 1221. Total energy = 3760.9699 kcal/mol (3755.3195 without restraints) Performing minimization step: 1222. Total energy = 3760.5994 kcal/mol (3754.9516 without restraints) Performing minimization step: 1223. Total energy = 3760.2290 kcal/mol (3754.5839 without restraints) Performing minimization step: 1224. Total energy = 3759.8592 kcal/mol (3754.2167 without restraints) Performing minimization step: 1225. Total energy = 3759.4900 kcal/mol (3753.8501 without restraints) Performing minimization step: 1226. Total energy = 3759.1211 kcal/mol (3753.4836 without restraints) Performing minimization step: 1227. Total energy = 3758.7527 kcal/mol (3753.1180 without restraints) Performing minimization step: 1228. Total energy = 3758.3848 kcal/mol (3752.7528 without restraints) Performing minimization step: 1229. Total energy = 3758.0172 kcal/mol (3752.3877 without restraints) Performing minimization step: 1230. Total energy = 3757.6504 kcal/mol (3752.0236 without restraints) Performing minimization step: 1231. Total energy = 3757.2840 kcal/mol (3751.6598 without restraints) Performing minimization step: 1232. Total energy = 3756.9177 kcal/mol (3751.2960 without restraints) Performing minimization step: 1233. Total energy = 3756.5519 kcal/mol (3750.9329 without restraints) Performing minimization step: 1234. Total energy = 3756.1866 kcal/mol (3750.5703 without restraints) Performing minimization step: 1235. Total energy = 3755.8217 kcal/mol (3750.2081 without restraints) Performing minimization step: 1236. Total energy = 3755.4566 kcal/mol (3749.8454 without restraints) Performing minimization step: 1237. Total energy = 3755.0919 kcal/mol (3749.4833 without restraints) Performing minimization step: 1238. Total energy = 3754.7283 kcal/mol (3749.1223 without restraints) Performing minimization step: 1239. Total energy = 3754.3655 kcal/mol (3748.7623 without restraints) Performing minimization step: 1240. Total energy = 3754.0029 kcal/mol (3748.4021 without restraints) Performing minimization step: 1241. Total energy = 3753.6405 kcal/mol (3748.0423 without restraints) Performing minimization step: 1242. Total energy = 3753.2784 kcal/mol (3747.6829 without restraints) Performing minimization step: 1243. Total energy = 3752.9167 kcal/mol (3747.3237 without restraints) Performing minimization step: 1244. Total energy = 3752.5554 kcal/mol (3746.9651 without restraints) Performing minimization step: 1245. Total energy = 3752.1946 kcal/mol (3746.6068 without restraints) Performing minimization step: 1246. Total energy = 3751.8336 kcal/mol (3746.2484 without restraints) Performing minimization step: 1247. Total energy = 3751.4745 kcal/mol (3745.8920 without restraints) Performing minimization step: 1248. Total energy = 3751.1151 kcal/mol (3745.5351 without restraints) Performing minimization step: 1249. Total energy = 3750.7558 kcal/mol (3745.1783 without restraints) Performing minimization step: 1250. Total energy = 3750.3972 kcal/mol (3744.8223 without restraints) Performing minimization step: 1251. Total energy = 3750.0387 kcal/mol (3744.4666 without restraints) Performing minimization step: 1252. Total energy = 3749.6807 kcal/mol (3744.1110 without restraints) Performing minimization step: 1253. Total energy = 3749.3234 kcal/mol (3743.7563 without restraints) Performing minimization step: 1254. Total energy = 3748.9663 kcal/mol (3743.4018 without restraints) Performing minimization step: 1255. Total energy = 3748.6095 kcal/mol (3743.0476 without restraints) Performing minimization step: 1256. Total energy = 3748.2533 kcal/mol (3742.6939 without restraints) Performing minimization step: 1257. Total energy = 3747.8973 kcal/mol (3742.3405 without restraints) Performing minimization step: 1258. Total energy = 3747.5419 kcal/mol (3741.9879 without restraints) Performing minimization step: 1259. Total energy = 3747.1872 kcal/mol (3741.6356 without restraints) Performing minimization step: 1260. Total energy = 3746.8326 kcal/mol (3741.2836 without restraints) Performing minimization step: 1261. Total energy = 3746.4779 kcal/mol (3740.9311 without restraints) Performing minimization step: 1262. Total energy = 3746.1236 kcal/mol (3740.5797 without restraints) Performing minimization step: 1263. Total energy = 3745.7696 kcal/mol (3740.2283 without restraints) Performing minimization step: 1264. Total energy = 3745.4164 kcal/mol (3739.8775 without restraints) Performing minimization step: 1265. Total energy = 3745.0640 kcal/mol (3739.5277 without restraints) Performing minimization step: 1266. Total energy = 3744.7116 kcal/mol (3739.1779 without restraints) Performing minimization step: 1267. Total energy = 3744.3595 kcal/mol (3738.8282 without restraints) Performing minimization step: 1268. Total energy = 3744.0079 kcal/mol (3738.4792 without restraints) Performing minimization step: 1269. Total energy = 3743.6559 kcal/mol (3738.1299 without restraints) Performing minimization step: 1270. Total energy = 3743.3053 kcal/mol (3737.7818 without restraints) Performing minimization step: 1271. Total energy = 3742.9548 kcal/mol (3737.4339 without restraints) Performing minimization step: 1272. Total energy = 3742.6047 kcal/mol (3737.0863 without restraints) Performing minimization step: 1273. Total energy = 3742.2554 kcal/mol (3736.7396 without restraints) Performing minimization step: 1274. Total energy = 3741.9058 kcal/mol (3736.3925 without restraints) Performing minimization step: 1275. Total energy = 3741.5570 kcal/mol (3736.0463 without restraints) Performing minimization step: 1276. Total energy = 3741.2081 kcal/mol (3735.6999 without restraints) Performing minimization step: 1277. Total energy = 3740.8599 kcal/mol (3735.3542 without restraints) Performing minimization step: 1278. Total energy = 3740.5117 kcal/mol (3735.0086 without restraints) Performing minimization step: 1279. Total energy = 3740.1635 kcal/mol (3734.6628 without restraints) Performing minimization step: 1280. Total energy = 3739.8162 kcal/mol (3734.3182 without restraints) Performing minimization step: 1281. Total energy = 3739.4695 kcal/mol (3733.9740 without restraints) Performing minimization step: 1282. Total energy = 3739.1232 kcal/mol (3733.6303 without restraints) Performing minimization step: 1283. Total energy = 3738.7773 kcal/mol (3733.2869 without restraints) Performing minimization step: 1284. Total energy = 3738.4315 kcal/mol (3732.9436 without restraints) Performing minimization step: 1285. Total energy = 3738.0858 kcal/mol (3732.6005 without restraints) Performing minimization step: 1286. Total energy = 3737.7410 kcal/mol (3732.2580 without restraints) Performing minimization step: 1287. Total energy = 3737.3960 kcal/mol (3731.9157 without restraints) Performing minimization step: 1288. Total energy = 3737.0517 kcal/mol (3731.5739 without restraints) Performing minimization step: 1289. Total energy = 3736.7086 kcal/mol (3731.2334 without restraints) Performing minimization step: 1290. Total energy = 3736.3652 kcal/mol (3730.8925 without restraints) Performing minimization step: 1291. Total energy = 3736.0222 kcal/mol (3730.5520 without restraints) Performing minimization step: 1292. Total energy = 3735.6798 kcal/mol (3730.2122 without restraints) Performing minimization step: 1293. Total energy = 3735.3373 kcal/mol (3729.8723 without restraints) Performing minimization step: 1294. Total energy = 3734.9959 kcal/mol (3729.5333 without restraints) Performing minimization step: 1295. Total energy = 3734.6543 kcal/mol (3729.1942 without restraints) Performing minimization step: 1296. Total energy = 3734.3130 kcal/mol (3728.8553 without restraints) Performing minimization step: 1297. Total energy = 3733.9718 kcal/mol (3728.5167 without restraints) Performing minimization step: 1298. Total energy = 3733.6314 kcal/mol (3728.1788 without restraints) Performing minimization step: 1299. Total energy = 3733.2913 kcal/mol (3727.8413 without restraints) Performing minimization step: 1300. Total energy = 3732.9513 kcal/mol (3727.5038 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 3732.6119 kcal/mol (3727.1667 without restraints) Performing minimization step: 1302. Total energy = 3732.2723 kcal/mol (3726.8297 without restraints) Performing minimization step: 1303. Total energy = 3731.9337 kcal/mol (3726.4937 without restraints) Performing minimization step: 1304. Total energy = 3731.5956 kcal/mol (3726.1581 without restraints) Performing minimization step: 1305. Total energy = 3731.2582 kcal/mol (3725.8232 without restraints) Performing minimization step: 1306. Total energy = 3730.9204 kcal/mol (3725.4878 without restraints) Performing minimization step: 1307. Total energy = 3730.5832 kcal/mol (3725.1532 without restraints) Performing minimization step: 1308. Total energy = 3730.2462 kcal/mol (3724.8185 without restraints) Performing minimization step: 1309. Total energy = 3729.9094 kcal/mol (3724.4844 without restraints) Performing minimization step: 1310. Total energy = 3729.5732 kcal/mol (3724.1505 without restraints) Performing minimization step: 1311. Total energy = 3729.2365 kcal/mol (3723.8165 without restraints) Performing minimization step: 1312. Total energy = 3728.9008 kcal/mol (3723.4832 without restraints) Performing minimization step: 1313. Total energy = 3728.5660 kcal/mol (3723.1508 without restraints) Performing minimization step: 1314. Total energy = 3728.2315 kcal/mol (3722.8189 without restraints) Performing minimization step: 1315. Total energy = 3727.8968 kcal/mol (3722.4867 without restraints) Performing minimization step: 1316. Total energy = 3727.5625 kcal/mol (3722.1549 without restraints) Performing minimization step: 1317. Total energy = 3727.2280 kcal/mol (3721.8228 without restraints) Performing minimization step: 1318. Total energy = 3726.8943 kcal/mol (3721.4917 without restraints) Performing minimization step: 1319. Total energy = 3726.5612 kcal/mol (3721.1611 without restraints) Performing minimization step: 1320. Total energy = 3726.2281 kcal/mol (3720.8305 without restraints) Performing minimization step: 1321. Total energy = 3725.8956 kcal/mol (3720.5005 without restraints) Performing minimization step: 1322. Total energy = 3725.5633 kcal/mol (3720.1707 without restraints) Performing minimization step: 1323. Total energy = 3725.2315 kcal/mol (3719.8414 without restraints) Performing minimization step: 1324. Total energy = 3724.9003 kcal/mol (3719.5126 without restraints) Performing minimization step: 1325. Total energy = 3724.5691 kcal/mol (3719.1838 without restraints) Performing minimization step: 1326. Total energy = 3724.2385 kcal/mol (3718.8557 without restraints) Performing minimization step: 1327. Total energy = 3723.9080 kcal/mol (3718.5277 without restraints) Performing minimization step: 1328. Total energy = 3723.5779 kcal/mol (3718.2001 without restraints) Performing minimization step: 1329. Total energy = 3723.2483 kcal/mol (3717.8730 without restraints) Performing minimization step: 1330. Total energy = 3722.9189 kcal/mol (3717.5460 without restraints) Performing minimization step: 1331. Total energy = 3722.5898 kcal/mol (3717.2194 without restraints) Performing minimization step: 1332. Total energy = 3722.2608 kcal/mol (3716.8929 without restraints) Performing minimization step: 1333. Total energy = 3721.9326 kcal/mol (3716.5672 without restraints) Performing minimization step: 1334. Total energy = 3721.6043 kcal/mol (3716.2413 without restraints) Performing minimization step: 1335. Total energy = 3721.2766 kcal/mol (3715.9161 without restraints) Performing minimization step: 1336. Total energy = 3720.9491 kcal/mol (3715.5910 without restraints) Performing minimization step: 1337. Total energy = 3720.6219 kcal/mol (3715.2663 without restraints) Performing minimization step: 1338. Total energy = 3720.2948 kcal/mol (3714.9415 without restraints) Performing minimization step: 1339. Total energy = 3719.9683 kcal/mol (3714.6177 without restraints) Performing minimization step: 1340. Total energy = 3719.6420 kcal/mol (3714.2937 without restraints) Performing minimization step: 1341. Total energy = 3719.3164 kcal/mol (3713.9706 without restraints) Performing minimization step: 1342. Total energy = 3718.9907 kcal/mol (3713.6473 without restraints) Performing minimization step: 1343. Total energy = 3718.6655 kcal/mol (3713.3245 without restraints) Performing minimization step: 1344. Total energy = 3718.3405 kcal/mol (3713.0021 without restraints) Performing minimization step: 1345. Total energy = 3718.0156 kcal/mol (3712.6796 without restraints) Performing minimization step: 1346. Total energy = 3717.6910 kcal/mol (3712.3572 without restraints) Performing minimization step: 1347. Total energy = 3717.3664 kcal/mol (3712.0353 without restraints) Performing minimization step: 1348. Total energy = 3717.0427 kcal/mol (3711.7141 without restraints) Performing minimization step: 1349. Total energy = 3716.7196 kcal/mol (3711.3934 without restraints) Performing minimization step: 1350. Total energy = 3716.3964 kcal/mol (3711.0726 without restraints) Performing minimization step: 1351. Total energy = 3716.0735 kcal/mol (3710.7519 without restraints) Performing minimization step: 1352. Total energy = 3715.7505 kcal/mol (3710.4316 without restraints) Performing minimization step: 1353. Total energy = 3715.4284 kcal/mol (3710.1119 without restraints) Performing minimization step: 1354. Total energy = 3715.1066 kcal/mol (3709.7926 without restraints) Performing minimization step: 1355. Total energy = 3714.7853 kcal/mol (3709.4736 without restraints) Performing minimization step: 1356. Total energy = 3714.4639 kcal/mol (3709.1548 without restraints) Performing minimization step: 1357. Total energy = 3714.1430 kcal/mol (3708.8362 without restraints) Performing minimization step: 1358. Total energy = 3713.8228 kcal/mol (3708.5186 without restraints) Performing minimization step: 1359. Total energy = 3713.5029 kcal/mol (3708.2011 without restraints) Performing minimization step: 1360. Total energy = 3713.1833 kcal/mol (3707.8839 without restraints) Performing minimization step: 1361. Total energy = 3712.8634 kcal/mol (3707.5662 without restraints) Performing minimization step: 1362. Total energy = 3712.5440 kcal/mol (3707.2494 without restraints) Performing minimization step: 1363. Total energy = 3712.2255 kcal/mol (3706.9334 without restraints) Performing minimization step: 1364. Total energy = 3711.9068 kcal/mol (3706.6170 without restraints) Performing minimization step: 1365. Total energy = 3711.5886 kcal/mol (3706.3013 without restraints) Performing minimization step: 1366. Total energy = 3711.2701 kcal/mol (3705.9852 without restraints) Performing minimization step: 1367. Total energy = 3710.9521 kcal/mol (3705.6696 without restraints) Performing minimization step: 1368. Total energy = 3710.6349 kcal/mol (3705.3549 without restraints) Performing minimization step: 1369. Total energy = 3710.3180 kcal/mol (3705.0403 without restraints) Performing minimization step: 1370. Total energy = 3710.0010 kcal/mol (3704.7258 without restraints) Performing minimization step: 1371. Total energy = 3709.6845 kcal/mol (3704.4117 without restraints) Performing minimization step: 1372. Total energy = 3709.3683 kcal/mol (3704.0979 without restraints) Performing minimization step: 1373. Total energy = 3709.0523 kcal/mol (3703.7844 without restraints) Performing minimization step: 1374. Total energy = 3708.7366 kcal/mol (3703.4710 without restraints) Performing minimization step: 1375. Total energy = 3708.4214 kcal/mol (3703.1583 without restraints) Performing minimization step: 1376. Total energy = 3708.1067 kcal/mol (3702.8459 without restraints) Performing minimization step: 1377. Total energy = 3707.7920 kcal/mol (3702.5336 without restraints) Performing minimization step: 1378. Total energy = 3707.4775 kcal/mol (3702.2214 without restraints) Performing minimization step: 1379. Total energy = 3707.1632 kcal/mol (3701.9097 without restraints) Performing minimization step: 1380. Total energy = 3706.8494 kcal/mol (3701.5983 without restraints) Performing minimization step: 1381. Total energy = 3706.5363 kcal/mol (3701.2876 without restraints) Performing minimization step: 1382. Total energy = 3706.2233 kcal/mol (3700.9770 without restraints) Performing minimization step: 1383. Total energy = 3705.9099 kcal/mol (3700.6658 without restraints) Performing minimization step: 1384. Total energy = 3705.5971 kcal/mol (3700.3556 without restraints) Performing minimization step: 1385. Total energy = 3705.2844 kcal/mol (3700.0452 without restraints) Performing minimization step: 1386. Total energy = 3704.9725 kcal/mol (3699.7358 without restraints) Performing minimization step: 1387. Total energy = 3704.6610 kcal/mol (3699.4267 without restraints) Performing minimization step: 1388. Total energy = 3704.3495 kcal/mol (3699.1176 without restraints) Performing minimization step: 1389. Total energy = 3704.0385 kcal/mol (3698.8088 without restraints) Performing minimization step: 1390. Total energy = 3703.7274 kcal/mol (3698.5003 without restraints) Performing minimization step: 1391. Total energy = 3703.4168 kcal/mol (3698.1921 without restraints) Performing minimization step: 1392. Total energy = 3703.1064 kcal/mol (3697.8842 without restraints) Performing minimization step: 1393. Total energy = 3702.7964 kcal/mol (3697.5762 without restraints) Performing minimization step: 1394. Total energy = 3702.4864 kcal/mol (3697.2689 without restraints) Performing minimization step: 1395. Total energy = 3702.1767 kcal/mol (3696.9615 without restraints) Performing minimization step: 1396. Total energy = 3701.8675 kcal/mol (3696.6547 without restraints) Performing minimization step: 1397. Total energy = 3701.5579 kcal/mol (3696.3475 without restraints) Performing minimization step: 1398. Total energy = 3701.2492 kcal/mol (3696.0411 without restraints) Performing minimization step: 1399. Total energy = 3700.9409 kcal/mol (3695.7352 without restraints) Performing minimization step: 1400. Total energy = 3700.6326 kcal/mol (3695.4293 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 3700.3248 kcal/mol (3695.1239 without restraints) Performing minimization step: 1402. Total energy = 3700.0173 kcal/mol (3694.8187 without restraints) Performing minimization step: 1403. Total energy = 3699.7098 kcal/mol (3694.5137 without restraints) Performing minimization step: 1404. Total energy = 3699.4028 kcal/mol (3694.2090 without restraints) Performing minimization step: 1405. Total energy = 3699.0962 kcal/mol (3693.9050 without restraints) Performing minimization step: 1406. Total energy = 3698.7901 kcal/mol (3693.6012 without restraints) Performing minimization step: 1407. Total energy = 3698.4845 kcal/mol (3693.2981 without restraints) Performing minimization step: 1408. Total energy = 3698.1790 kcal/mol (3692.9947 without restraints) Performing minimization step: 1409. Total energy = 3697.8733 kcal/mol (3692.6915 without restraints) Performing minimization step: 1410. Total energy = 3697.5684 kcal/mol (3692.3888 without restraints) Performing minimization step: 1411. Total energy = 3697.2629 kcal/mol (3692.0856 without restraints) Performing minimization step: 1412. Total energy = 3696.9585 kcal/mol (3691.7837 without restraints) Performing minimization step: 1413. Total energy = 3696.6543 kcal/mol (3691.4817 without restraints) Performing minimization step: 1414. Total energy = 3696.3499 kcal/mol (3691.1799 without restraints) Performing minimization step: 1415. Total energy = 3696.0459 kcal/mol (3690.8782 without restraints) Performing minimization step: 1416. Total energy = 3695.7423 kcal/mol (3690.5770 without restraints) Performing minimization step: 1417. Total energy = 3695.4393 kcal/mol (3690.2762 without restraints) Performing minimization step: 1418. Total energy = 3695.1362 kcal/mol (3689.9754 without restraints) Performing minimization step: 1419. Total energy = 3694.8334 kcal/mol (3689.6751 without restraints) Performing minimization step: 1420. Total energy = 3694.5311 kcal/mol (3689.3752 without restraints) Performing minimization step: 1421. Total energy = 3694.2287 kcal/mol (3689.0751 without restraints) Performing minimization step: 1422. Total energy = 3693.9266 kcal/mol (3688.7754 without restraints) Performing minimization step: 1423. Total energy = 3693.6253 kcal/mol (3688.4764 without restraints) Performing minimization step: 1424. Total energy = 3693.3238 kcal/mol (3688.1772 without restraints) Performing minimization step: 1425. Total energy = 3693.0227 kcal/mol (3687.8785 without restraints) Performing minimization step: 1426. Total energy = 3692.7220 kcal/mol (3687.5802 without restraints) Performing minimization step: 1427. Total energy = 3692.4213 kcal/mol (3687.2818 without restraints) Performing minimization step: 1428. Total energy = 3692.1209 kcal/mol (3686.9837 without restraints) Performing minimization step: 1429. Total energy = 3691.8209 kcal/mol (3686.6862 without restraints) Performing minimization step: 1430. Total energy = 3691.5214 kcal/mol (3686.3890 without restraints) Performing minimization step: 1431. Total energy = 3691.2221 kcal/mol (3686.0920 without restraints) Performing minimization step: 1432. Total energy = 3690.9228 kcal/mol (3685.7951 without restraints) Performing minimization step: 1433. Total energy = 3690.6238 kcal/mol (3685.4985 without restraints) Performing minimization step: 1434. Total energy = 3690.3248 kcal/mol (3685.2017 without restraints) Performing minimization step: 1435. Total energy = 3690.0260 kcal/mol (3684.9053 without restraints) Performing minimization step: 1436. Total energy = 3689.7278 kcal/mol (3684.6095 without restraints) Performing minimization step: 1437. Total energy = 3689.4299 kcal/mol (3684.3139 without restraints) Performing minimization step: 1438. Total energy = 3689.1314 kcal/mol (3684.0177 without restraints) Performing minimization step: 1439. Total energy = 3688.8340 kcal/mol (3683.7226 without restraints) Performing minimization step: 1440. Total energy = 3688.5365 kcal/mol (3683.4276 without restraints) Performing minimization step: 1441. Total energy = 3688.2397 kcal/mol (3683.1330 without restraints) Performing minimization step: 1442. Total energy = 3687.9432 kcal/mol (3682.8389 without restraints) Performing minimization step: 1443. Total energy = 3687.6467 kcal/mol (3682.5445 without restraints) Performing minimization step: 1444. Total energy = 3687.3502 kcal/mol (3682.2505 without restraints) Performing minimization step: 1445. Total energy = 3687.0543 kcal/mol (3681.9568 without restraints) Performing minimization step: 1446. Total energy = 3686.7584 kcal/mol (3681.6633 without restraints) Performing minimization step: 1447. Total energy = 3686.4630 kcal/mol (3681.3702 without restraints) Performing minimization step: 1448. Total energy = 3686.1680 kcal/mol (3681.0776 without restraints) Performing minimization step: 1449. Total energy = 3685.8730 kcal/mol (3680.7849 without restraints) Performing minimization step: 1450. Total energy = 3685.5782 kcal/mol (3680.4924 without restraints) Performing minimization step: 1451. Total energy = 3685.2837 kcal/mol (3680.2002 without restraints) Performing minimization step: 1452. Total energy = 3684.9891 kcal/mol (3679.9081 without restraints) Performing minimization step: 1453. Total energy = 3684.6952 kcal/mol (3679.6163 without restraints) Performing minimization step: 1454. Total energy = 3684.4015 kcal/mol (3679.3250 without restraints) Performing minimization step: 1455. Total energy = 3684.1079 kcal/mol (3679.0338 without restraints) Performing minimization step: 1456. Total energy = 3683.8148 kcal/mol (3678.7430 without restraints) Performing minimization step: 1457. Total energy = 3683.5216 kcal/mol (3678.4520 without restraints) Performing minimization step: 1458. Total energy = 3683.2290 kcal/mol (3678.1618 without restraints) Performing minimization step: 1459. Total energy = 3682.9365 kcal/mol (3677.8716 without restraints) Performing minimization step: 1460. Total energy = 3682.6445 kcal/mol (3677.5819 without restraints) Performing minimization step: 1461. Total energy = 3682.3523 kcal/mol (3677.2919 without restraints) Performing minimization step: 1462. Total energy = 3682.0607 kcal/mol (3677.0025 without restraints) Performing minimization step: 1463. Total energy = 3681.7688 kcal/mol (3676.7132 without restraints) Performing minimization step: 1464. Total energy = 3681.4781 kcal/mol (3676.4250 without restraints) Performing minimization step: 1465. Total energy = 3681.1875 kcal/mol (3676.1364 without restraints) Performing minimization step: 1466. Total energy = 3680.8969 kcal/mol (3675.8481 without restraints) Performing minimization step: 1467. Total energy = 3680.6066 kcal/mol (3675.5601 without restraints) Performing minimization step: 1468. Total energy = 3680.3169 kcal/mol (3675.2728 without restraints) Performing minimization step: 1469. Total energy = 3680.0269 kcal/mol (3674.9850 without restraints) Performing minimization step: 1470. Total energy = 3679.7376 kcal/mol (3674.6980 without restraints) Performing minimization step: 1471. Total energy = 3679.4480 kcal/mol (3674.4108 without restraints) Performing minimization step: 1472. Total energy = 3679.1590 kcal/mol (3674.1241 without restraints) Performing minimization step: 1473. Total energy = 3678.8701 kcal/mol (3673.8375 without restraints) Performing minimization step: 1474. Total energy = 3678.5814 kcal/mol (3673.5510 without restraints) Performing minimization step: 1475. Total energy = 3678.2931 kcal/mol (3673.2650 without restraints) Performing minimization step: 1476. Total energy = 3678.0051 kcal/mol (3672.9793 without restraints) Performing minimization step: 1477. Total energy = 3677.7174 kcal/mol (3672.6940 without restraints) Performing minimization step: 1478. Total energy = 3677.4298 kcal/mol (3672.4087 without restraints) Performing minimization step: 1479. Total energy = 3677.1420 kcal/mol (3672.1231 without restraints) Performing minimization step: 1480. Total energy = 3676.8546 kcal/mol (3671.8380 without restraints) Performing minimization step: 1481. Total energy = 3676.5679 kcal/mol (3671.5537 without restraints) Performing minimization step: 1482. Total energy = 3676.2812 kcal/mol (3671.2692 without restraints) Performing minimization step: 1483. Total energy = 3675.9948 kcal/mol (3670.9850 without restraints) Performing minimization step: 1484. Total energy = 3675.7083 kcal/mol (3670.7009 without restraints) Performing minimization step: 1485. Total energy = 3675.4222 kcal/mol (3670.4171 without restraints) Performing minimization step: 1486. Total energy = 3675.1367 kcal/mol (3670.1338 without restraints) Performing minimization step: 1487. Total energy = 3674.8511 kcal/mol (3669.8504 without restraints) Performing minimization step: 1488. Total energy = 3674.5658 kcal/mol (3669.5675 without restraints) Performing minimization step: 1489. Total energy = 3674.2808 kcal/mol (3669.2848 without restraints) Performing minimization step: 1490. Total energy = 3673.9961 kcal/mol (3669.0024 without restraints) Performing minimization step: 1491. Total energy = 3673.7115 kcal/mol (3668.7201 without restraints) Performing minimization step: 1492. Total energy = 3673.4271 kcal/mol (3668.4378 without restraints) Performing minimization step: 1493. Total energy = 3673.1430 kcal/mol (3668.1561 without restraints) Performing minimization step: 1494. Total energy = 3672.8590 kcal/mol (3667.8744 without restraints) Performing minimization step: 1495. Total energy = 3672.5751 kcal/mol (3667.5928 without restraints) Performing minimization step: 1496. Total energy = 3672.2918 kcal/mol (3667.3118 without restraints) Performing minimization step: 1497. Total energy = 3672.0084 kcal/mol (3667.0306 without restraints) Performing minimization step: 1498. Total energy = 3671.7254 kcal/mol (3666.7499 without restraints) Performing minimization step: 1499. Total energy = 3671.4428 kcal/mol (3666.4696 without restraints) Performing minimization step: 1500. Total energy = 3671.1604 kcal/mol (3666.1895 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 3670.8781 kcal/mol (3665.9094 without restraints) Performing minimization step: 1502. Total energy = 3670.5960 kcal/mol (3665.6295 without restraints) Performing minimization step: 1503. Total energy = 3670.3144 kcal/mol (3665.3502 without restraints) Performing minimization step: 1504. Total energy = 3670.0327 kcal/mol (3665.0708 without restraints) Performing minimization step: 1505. Total energy = 3669.7517 kcal/mol (3664.7921 without restraints) Performing minimization step: 1506. Total energy = 3669.4705 kcal/mol (3664.5131 without restraints) Performing minimization step: 1507. Total energy = 3669.1898 kcal/mol (3664.2346 without restraints) Performing minimization step: 1508. Total energy = 3668.9086 kcal/mol (3663.9557 without restraints) Performing minimization step: 1509. Total energy = 3668.6284 kcal/mol (3663.6779 without restraints) Performing minimization step: 1510. Total energy = 3668.3486 kcal/mol (3663.4003 without restraints) Performing minimization step: 1511. Total energy = 3668.0683 kcal/mol (3663.1222 without restraints) Performing minimization step: 1512. Total energy = 3667.7886 kcal/mol (3662.8448 without restraints) Performing minimization step: 1513. Total energy = 3667.5094 kcal/mol (3662.5679 without restraints) Performing minimization step: 1514. Total energy = 3667.2302 kcal/mol (3662.2908 without restraints) Performing minimization step: 1515. Total energy = 3666.9509 kcal/mol (3662.0137 without restraints) Performing minimization step: 1516. Total energy = 3666.6721 kcal/mol (3661.7373 without restraints) Performing minimization step: 1517. Total energy = 3666.3936 kcal/mol (3661.4609 without restraints) Performing minimization step: 1518. Total energy = 3666.1148 kcal/mol (3661.1846 without restraints) Performing minimization step: 1519. Total energy = 3665.8368 kcal/mol (3660.9087 without restraints) Performing minimization step: 1520. Total energy = 3665.5588 kcal/mol (3660.6332 without restraints) Performing minimization step: 1521. Total energy = 3665.2814 kcal/mol (3660.3579 without restraints) Performing minimization step: 1522. Total energy = 3665.0040 kcal/mol (3660.0828 without restraints) Performing minimization step: 1523. Total energy = 3664.7270 kcal/mol (3659.8081 without restraints) Performing minimization step: 1524. Total energy = 3664.4500 kcal/mol (3659.5331 without restraints) Performing minimization step: 1525. Total energy = 3664.1737 kcal/mol (3659.2594 without restraints) Performing minimization step: 1526. Total energy = 3663.8979 kcal/mol (3658.9857 without restraints) Performing minimization step: 1527. Total energy = 3663.6217 kcal/mol (3658.7117 without restraints) Performing minimization step: 1528. Total energy = 3663.3456 kcal/mol (3658.4377 without restraints) Performing minimization step: 1529. Total energy = 3663.0695 kcal/mol (3658.1639 without restraints) Performing minimization step: 1530. Total energy = 3662.7935 kcal/mol (3657.8903 without restraints) Performing minimization step: 1531. Total energy = 3662.5183 kcal/mol (3657.6173 without restraints) Performing minimization step: 1532. Total energy = 3662.2432 kcal/mol (3657.3444 without restraints) Performing minimization step: 1533. Total energy = 3661.9680 kcal/mol (3657.0714 without restraints) Performing minimization step: 1534. Total energy = 3661.6933 kcal/mol (3656.7990 without restraints) Performing minimization step: 1535. Total energy = 3661.4190 kcal/mol (3656.5268 without restraints) Performing minimization step: 1536. Total energy = 3661.1443 kcal/mol (3656.2545 without restraints) Performing minimization step: 1537. Total energy = 3660.8701 kcal/mol (3655.9825 without restraints) Performing minimization step: 1538. Total energy = 3660.5962 kcal/mol (3655.7107 without restraints) Performing minimization step: 1539. Total energy = 3660.3225 kcal/mol (3655.4393 without restraints) Performing minimization step: 1540. Total energy = 3660.0488 kcal/mol (3655.1677 without restraints) Performing minimization step: 1541. Total energy = 3659.7757 kcal/mol (3654.8970 without restraints) Performing minimization step: 1542. Total energy = 3659.5026 kcal/mol (3654.6259 without restraints) Performing minimization step: 1543. Total energy = 3659.2296 kcal/mol (3654.3554 without restraints) Performing minimization step: 1544. Total energy = 3658.9571 kcal/mol (3654.0851 without restraints) Performing minimization step: 1545. Total energy = 3658.6848 kcal/mol (3653.8149 without restraints) Performing minimization step: 1546. Total energy = 3658.4124 kcal/mol (3653.5448 without restraints) Performing minimization step: 1547. Total energy = 3658.1402 kcal/mol (3653.2746 without restraints) Performing minimization step: 1548. Total energy = 3657.8684 kcal/mol (3653.0052 without restraints) Performing minimization step: 1549. Total energy = 3657.5969 kcal/mol (3652.7360 without restraints) Performing minimization step: 1550. Total energy = 3657.3259 kcal/mol (3652.4671 without restraints) Performing minimization step: 1551. Total energy = 3657.0548 kcal/mol (3652.1983 without restraints) Performing minimization step: 1552. Total energy = 3656.7840 kcal/mol (3651.9297 without restraints) Performing minimization step: 1553. Total energy = 3656.5133 kcal/mol (3651.6609 without restraints) Performing minimization step: 1554. Total energy = 3656.2425 kcal/mol (3651.3926 without restraints) Performing minimization step: 1555. Total energy = 3655.9723 kcal/mol (3651.1247 without restraints) Performing minimization step: 1556. Total energy = 3655.7023 kcal/mol (3650.8569 without restraints) Performing minimization step: 1557. Total energy = 3655.4332 kcal/mol (3650.5900 without restraints) Performing minimization step: 1558. Total energy = 3655.1638 kcal/mol (3650.3227 without restraints) Performing minimization step: 1559. Total energy = 3654.8943 kcal/mol (3650.0555 without restraints) Performing minimization step: 1560. Total energy = 3654.6252 kcal/mol (3649.7886 without restraints) Performing minimization step: 1561. Total energy = 3654.3563 kcal/mol (3649.5219 without restraints) Performing minimization step: 1562. Total energy = 3654.0873 kcal/mol (3649.2552 without restraints) Performing minimization step: 1563. Total energy = 3653.8192 kcal/mol (3648.9894 without restraints) Performing minimization step: 1564. Total energy = 3653.5509 kcal/mol (3648.7232 without restraints) Performing minimization step: 1565. Total energy = 3653.2827 kcal/mol (3648.4571 without restraints) Performing minimization step: 1566. Total energy = 3653.0150 kcal/mol (3648.1917 without restraints) Performing minimization step: 1567. Total energy = 3652.7473 kcal/mol (3647.9262 without restraints) Performing minimization step: 1568. Total energy = 3652.4795 kcal/mol (3647.6606 without restraints) Performing minimization step: 1569. Total energy = 3652.2123 kcal/mol (3647.3956 without restraints) Performing minimization step: 1570. Total energy = 3651.9448 kcal/mol (3647.1303 without restraints) Performing minimization step: 1571. Total energy = 3651.6780 kcal/mol (3646.8657 without restraints) Performing minimization step: 1572. Total energy = 3651.4114 kcal/mol (3646.6014 without restraints) Performing minimization step: 1573. Total energy = 3651.1452 kcal/mol (3646.3374 without restraints) Performing minimization step: 1574. Total energy = 3650.8793 kcal/mol (3646.0736 without restraints) Performing minimization step: 1575. Total energy = 3650.6132 kcal/mol (3645.8097 without restraints) Performing minimization step: 1576. Total energy = 3650.3475 kcal/mol (3645.5461 without restraints) Performing minimization step: 1577. Total energy = 3650.0822 kcal/mol (3645.2831 without restraints) Performing minimization step: 1578. Total energy = 3649.8167 kcal/mol (3645.0199 without restraints) Performing minimization step: 1579. Total energy = 3649.5515 kcal/mol (3644.7566 without restraints) Performing minimization step: 1580. Total energy = 3649.2863 kcal/mol (3644.4938 without restraints) Performing minimization step: 1581. Total energy = 3649.0218 kcal/mol (3644.2315 without restraints) Performing minimization step: 1582. Total energy = 3648.7573 kcal/mol (3643.9691 without restraints) Performing minimization step: 1583. Total energy = 3648.4923 kcal/mol (3643.7064 without restraints) Performing minimization step: 1584. Total energy = 3648.2277 kcal/mol (3643.4439 without restraints) Performing minimization step: 1585. Total energy = 3647.9634 kcal/mol (3643.1818 without restraints) Performing minimization step: 1586. Total energy = 3647.6996 kcal/mol (3642.9201 without restraints) Performing minimization step: 1587. Total energy = 3647.4360 kcal/mol (3642.6587 without restraints) Performing minimization step: 1588. Total energy = 3647.1720 kcal/mol (3642.3967 without restraints) Performing minimization step: 1589. Total energy = 3646.9084 kcal/mol (3642.1354 without restraints) Performing minimization step: 1590. Total energy = 3646.6451 kcal/mol (3641.8745 without restraints) Performing minimization step: 1591. Total energy = 3646.3823 kcal/mol (3641.6138 without restraints) Performing minimization step: 1592. Total energy = 3646.1195 kcal/mol (3641.3532 without restraints) Performing minimization step: 1593. Total energy = 3645.8569 kcal/mol (3641.0929 without restraints) Performing minimization step: 1594. Total energy = 3645.5952 kcal/mol (3640.8333 without restraints) Performing minimization step: 1595. Total energy = 3645.3332 kcal/mol (3640.5734 without restraints) Performing minimization step: 1596. Total energy = 3645.0712 kcal/mol (3640.3135 without restraints) Performing minimization step: 1597. Total energy = 3644.8095 kcal/mol (3640.0541 without restraints) Performing minimization step: 1598. Total energy = 3644.5481 kcal/mol (3639.7950 without restraints) Performing minimization step: 1599. Total energy = 3644.2868 kcal/mol (3639.5357 without restraints) Performing minimization step: 1600. Total energy = 3644.0256 kcal/mol (3639.2767 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 3643.7648 kcal/mol (3639.0180 without restraints) Performing minimization step: 1602. Total energy = 3643.5039 kcal/mol (3638.7593 without restraints) Performing minimization step: 1603. Total energy = 3643.2437 kcal/mol (3638.5013 without restraints) Performing minimization step: 1604. Total energy = 3642.9827 kcal/mol (3638.2425 without restraints) Performing minimization step: 1605. Total energy = 3642.7224 kcal/mol (3637.9843 without restraints) Performing minimization step: 1606. Total energy = 3642.4621 kcal/mol (3637.7262 without restraints) Performing minimization step: 1607. Total energy = 3642.2025 kcal/mol (3637.4688 without restraints) Performing minimization step: 1608. Total energy = 3641.9430 kcal/mol (3637.2114 without restraints) Performing minimization step: 1609. Total energy = 3641.6835 kcal/mol (3636.9541 without restraints) Performing minimization step: 1610. Total energy = 3641.4246 kcal/mol (3636.6972 without restraints) Performing minimization step: 1611. Total energy = 3641.1654 kcal/mol (3636.4403 without restraints) Performing minimization step: 1612. Total energy = 3640.9061 kcal/mol (3636.1831 without restraints) Performing minimization step: 1613. Total energy = 3640.6470 kcal/mol (3635.9263 without restraints) Performing minimization step: 1614. Total energy = 3640.3884 kcal/mol (3635.6697 without restraints) Performing minimization step: 1615. Total energy = 3640.1301 kcal/mol (3635.4137 without restraints) Performing minimization step: 1616. Total energy = 3639.8718 kcal/mol (3635.1574 without restraints) Performing minimization step: 1617. Total energy = 3639.6130 kcal/mol (3634.9008 without restraints) Performing minimization step: 1618. Total energy = 3639.3553 kcal/mol (3634.6454 without restraints) Performing minimization step: 1619. Total energy = 3639.0975 kcal/mol (3634.3896 without restraints) Performing minimization step: 1620. Total energy = 3638.8405 kcal/mol (3634.1348 without restraints) Performing minimization step: 1621. Total energy = 3638.5832 kcal/mol (3633.8796 without restraints) Performing minimization step: 1622. Total energy = 3638.3263 kcal/mol (3633.6249 without restraints) Performing minimization step: 1623. Total energy = 3638.0693 kcal/mol (3633.3701 without restraints) Performing minimization step: 1624. Total energy = 3637.8129 kcal/mol (3633.1159 without restraints) Performing minimization step: 1625. Total energy = 3637.5565 kcal/mol (3632.8615 without restraints) Performing minimization step: 1626. Total energy = 3637.3001 kcal/mol (3632.6074 without restraints) Performing minimization step: 1627. Total energy = 3637.0443 kcal/mol (3632.3537 without restraints) Performing minimization step: 1628. Total energy = 3636.7886 kcal/mol (3632.1002 without restraints) Performing minimization step: 1629. Total energy = 3636.5328 kcal/mol (3631.8465 without restraints) Performing minimization step: 1630. Total energy = 3636.2774 kcal/mol (3631.5931 without restraints) Performing minimization step: 1631. Total energy = 3636.0218 kcal/mol (3631.3398 without restraints) Performing minimization step: 1632. Total energy = 3635.7667 kcal/mol (3631.0867 without restraints) Performing minimization step: 1633. Total energy = 3635.5115 kcal/mol (3630.8338 without restraints) Performing minimization step: 1634. Total energy = 3635.2567 kcal/mol (3630.5810 without restraints) Performing minimization step: 1635. Total energy = 3635.0022 kcal/mol (3630.3288 without restraints) Performing minimization step: 1636. Total energy = 3634.7480 kcal/mol (3630.0766 without restraints) Performing minimization step: 1637. Total energy = 3634.4937 kcal/mol (3629.8245 without restraints) Performing minimization step: 1638. Total energy = 3634.2398 kcal/mol (3629.5728 without restraints) Performing minimization step: 1639. Total energy = 3633.9862 kcal/mol (3629.3213 without restraints) Performing minimization step: 1640. Total energy = 3633.7326 kcal/mol (3629.0698 without restraints) Performing minimization step: 1641. Total energy = 3633.4792 kcal/mol (3628.8186 without restraints) Performing minimization step: 1642. Total energy = 3633.2268 kcal/mol (3628.5684 without restraints) Performing minimization step: 1643. Total energy = 3632.9739 kcal/mol (3628.3176 without restraints) Performing minimization step: 1644. Total energy = 3632.7218 kcal/mol (3628.0676 without restraints) Performing minimization step: 1645. Total energy = 3632.4690 kcal/mol (3627.8169 without restraints) Performing minimization step: 1646. Total energy = 3632.2167 kcal/mol (3627.5667 without restraints) Performing minimization step: 1647. Total energy = 3631.9644 kcal/mol (3627.3166 without restraints) Performing minimization step: 1648. Total energy = 3631.7123 kcal/mol (3627.0666 without restraints) Performing minimization step: 1649. Total energy = 3631.4607 kcal/mol (3626.8172 without restraints) Performing minimization step: 1650. Total energy = 3631.2088 kcal/mol (3626.5674 without restraints) Performing minimization step: 1651. Total energy = 3630.9572 kcal/mol (3626.3179 without restraints) Performing minimization step: 1652. Total energy = 3630.7056 kcal/mol (3626.0684 without restraints) Performing minimization step: 1653. Total energy = 3630.4547 kcal/mol (3625.8197 without restraints) Performing minimization step: 1654. Total energy = 3630.2038 kcal/mol (3625.5709 without restraints) Performing minimization step: 1655. Total energy = 3629.9532 kcal/mol (3625.3224 without restraints) Performing minimization step: 1656. Total energy = 3629.7027 kcal/mol (3625.0740 without restraints) Performing minimization step: 1657. Total energy = 3629.4522 kcal/mol (3624.8257 without restraints) Performing minimization step: 1658. Total energy = 3629.2026 kcal/mol (3624.5782 without restraints) Performing minimization step: 1659. Total energy = 3628.9526 kcal/mol (3624.3303 without restraints) Performing minimization step: 1660. Total energy = 3628.7026 kcal/mol (3624.0824 without restraints) Performing minimization step: 1661. Total energy = 3628.4531 kcal/mol (3623.8349 without restraints) Performing minimization step: 1662. Total energy = 3628.2033 kcal/mol (3623.5874 without restraints) Performing minimization step: 1663. Total energy = 3627.9539 kcal/mol (3623.3400 without restraints) Performing minimization step: 1664. Total energy = 3627.7049 kcal/mol (3623.0932 without restraints) Performing minimization step: 1665. Total energy = 3627.4566 kcal/mol (3622.8470 without restraints) Performing minimization step: 1666. Total energy = 3627.2079 kcal/mol (3622.6004 without restraints) Performing minimization step: 1667. Total energy = 3626.9586 kcal/mol (3622.3532 without restraints) Performing minimization step: 1668. Total energy = 3626.7103 kcal/mol (3622.1070 without restraints) Performing minimization step: 1669. Total energy = 3626.4623 kcal/mol (3621.8611 without restraints) Performing minimization step: 1670. Total energy = 3626.2139 kcal/mol (3621.6148 without restraints) Performing minimization step: 1671. Total energy = 3625.9657 kcal/mol (3621.3687 without restraints) Performing minimization step: 1672. Total energy = 3625.7173 kcal/mol (3621.1225 without restraints) Performing minimization step: 1673. Total energy = 3625.4698 kcal/mol (3620.8771 without restraints) Performing minimization step: 1674. Total energy = 3625.2227 kcal/mol (3620.6320 without restraints) Performing minimization step: 1675. Total energy = 3624.9752 kcal/mol (3620.3865 without restraints) Performing minimization step: 1676. Total energy = 3624.7281 kcal/mol (3620.1416 without restraints) Performing minimization step: 1677. Total energy = 3624.4813 kcal/mol (3619.8969 without restraints) Performing minimization step: 1678. Total energy = 3624.2347 kcal/mol (3619.6525 without restraints) Performing minimization step: 1679. Total energy = 3623.9884 kcal/mol (3619.4083 without restraints) Performing minimization step: 1680. Total energy = 3623.7421 kcal/mol (3619.1641 without restraints) Performing minimization step: 1681. Total energy = 3623.4960 kcal/mol (3618.9201 without restraints) Performing minimization step: 1682. Total energy = 3623.2502 kcal/mol (3618.6765 without restraints) Performing minimization step: 1683. Total energy = 3623.0048 kcal/mol (3618.4331 without restraints) Performing minimization step: 1684. Total energy = 3622.7598 kcal/mol (3618.1903 without restraints) Performing minimization step: 1685. Total energy = 3622.5145 kcal/mol (3617.9470 without restraints) Performing minimization step: 1686. Total energy = 3622.2693 kcal/mol (3617.7038 without restraints) Performing minimization step: 1687. Total energy = 3622.0242 kcal/mol (3617.4609 without restraints) Performing minimization step: 1688. Total energy = 3621.7791 kcal/mol (3617.2178 without restraints) Performing minimization step: 1689. Total energy = 3621.5339 kcal/mol (3616.9747 without restraints) Performing minimization step: 1690. Total energy = 3621.2892 kcal/mol (3616.7321 without restraints) Performing minimization step: 1691. Total energy = 3621.0447 kcal/mol (3616.4898 without restraints) Performing minimization step: 1692. Total energy = 3620.8003 kcal/mol (3616.2475 without restraints) Performing minimization step: 1693. Total energy = 3620.5563 kcal/mol (3616.0055 without restraints) Performing minimization step: 1694. Total energy = 3620.3127 kcal/mol (3615.7640 without restraints) Performing minimization step: 1695. Total energy = 3620.0689 kcal/mol (3615.5223 without restraints) Performing minimization step: 1696. Total energy = 3619.8253 kcal/mol (3615.2809 without restraints) Performing minimization step: 1697. Total energy = 3619.5818 kcal/mol (3615.0393 without restraints) Performing minimization step: 1698. Total energy = 3619.3386 kcal/mol (3614.7983 without restraints) Performing minimization step: 1699. Total energy = 3619.0952 kcal/mol (3614.5569 without restraints) Performing minimization step: 1700. Total energy = 3618.8529 kcal/mol (3614.3167 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 3618.6095 kcal/mol (3614.0753 without restraints) Performing minimization step: 1702. Total energy = 3618.3666 kcal/mol (3613.8346 without restraints) Performing minimization step: 1703. Total energy = 3618.1243 kcal/mol (3613.5943 without restraints) Performing minimization step: 1704. Total energy = 3617.8819 kcal/mol (3613.3540 without restraints) Performing minimization step: 1705. Total energy = 3617.6397 kcal/mol (3613.1139 without restraints) Performing minimization step: 1706. Total energy = 3617.3979 kcal/mol (3612.8742 without restraints) Performing minimization step: 1707. Total energy = 3617.1563 kcal/mol (3612.6346 without restraints) Performing minimization step: 1708. Total energy = 3616.9148 kcal/mol (3612.3952 without restraints) Performing minimization step: 1709. Total energy = 3616.6729 kcal/mol (3612.1554 without restraints) Performing minimization step: 1710. Total energy = 3616.4317 kcal/mol (3611.9163 without restraints) Performing minimization step: 1711. Total energy = 3616.1897 kcal/mol (3611.6764 without restraints) Performing minimization step: 1712. Total energy = 3615.9488 kcal/mol (3611.4376 without restraints) Performing minimization step: 1713. Total energy = 3615.7080 kcal/mol (3611.1987 without restraints) Performing minimization step: 1714. Total energy = 3615.4675 kcal/mol (3610.9605 without restraints) Performing minimization step: 1715. Total energy = 3615.2271 kcal/mol (3610.7221 without restraints) Performing minimization step: 1716. Total energy = 3614.9866 kcal/mol (3610.4836 without restraints) Performing minimization step: 1717. Total energy = 3614.7465 kcal/mol (3610.2456 without restraints) Performing minimization step: 1718. Total energy = 3614.5064 kcal/mol (3610.0076 without restraints) Performing minimization step: 1719. Total energy = 3614.2665 kcal/mol (3609.7697 without restraints) Performing minimization step: 1720. Total energy = 3614.0272 kcal/mol (3609.5324 without restraints) Performing minimization step: 1721. Total energy = 3613.7877 kcal/mol (3609.2950 without restraints) Performing minimization step: 1722. Total energy = 3613.5483 kcal/mol (3609.0577 without restraints) Performing minimization step: 1723. Total energy = 3613.3093 kcal/mol (3608.8207 without restraints) Performing minimization step: 1724. Total energy = 3613.0704 kcal/mol (3608.5839 without restraints) Performing minimization step: 1725. Total energy = 3612.8315 kcal/mol (3608.3471 without restraints) Performing minimization step: 1726. Total energy = 3612.5925 kcal/mol (3608.1101 without restraints) Performing minimization step: 1727. Total energy = 3612.3544 kcal/mol (3607.8741 without restraints) Performing minimization step: 1728. Total energy = 3612.1159 kcal/mol (3607.6377 without restraints) Performing minimization step: 1729. Total energy = 3611.8776 kcal/mol (3607.4015 without restraints) Performing minimization step: 1730. Total energy = 3611.6403 kcal/mol (3607.1662 without restraints) Performing minimization step: 1731. Total energy = 3611.4024 kcal/mol (3606.9304 without restraints) Performing minimization step: 1732. Total energy = 3611.1651 kcal/mol (3606.6952 without restraints) Performing minimization step: 1733. Total energy = 3610.9278 kcal/mol (3606.4598 without restraints) Performing minimization step: 1734. Total energy = 3610.6905 kcal/mol (3606.2245 without restraints) Performing minimization step: 1735. Total energy = 3610.4533 kcal/mol (3605.9895 without restraints) Performing minimization step: 1736. Total energy = 3610.2163 kcal/mol (3605.7545 without restraints) Performing minimization step: 1737. Total energy = 3609.9798 kcal/mol (3605.5200 without restraints) Performing minimization step: 1738. Total energy = 3609.7431 kcal/mol (3605.2855 without restraints) Performing minimization step: 1739. Total energy = 3609.5067 kcal/mol (3605.0510 without restraints) Performing minimization step: 1740. Total energy = 3609.2707 kcal/mol (3604.8174 without restraints) Performing minimization step: 1741. Total energy = 3609.0347 kcal/mol (3604.5831 without restraints) Performing minimization step: 1742. Total energy = 3608.7991 kcal/mol (3604.3496 without restraints) Performing minimization step: 1743. Total energy = 3608.5627 kcal/mol (3604.1152 without restraints) Performing minimization step: 1744. Total energy = 3608.3266 kcal/mol (3603.8810 without restraints) Performing minimization step: 1745. Total energy = 3608.0908 kcal/mol (3603.6475 without restraints) Performing minimization step: 1746. Total energy = 3607.8556 kcal/mol (3603.4144 without restraints) Performing minimization step: 1747. Total energy = 3607.6207 kcal/mol (3603.1814 without restraints) Performing minimization step: 1748. Total energy = 3607.3857 kcal/mol (3602.9484 without restraints) Performing minimization step: 1749. Total energy = 3607.1508 kcal/mol (3602.7156 without restraints) Performing minimization step: 1750. Total energy = 3606.9159 kcal/mol (3602.4827 without restraints) Performing minimization step: 1751. Total energy = 3606.6815 kcal/mol (3602.2504 without restraints) Performing minimization step: 1752. Total energy = 3606.4472 kcal/mol (3602.0181 without restraints) Performing minimization step: 1753. Total energy = 3606.2126 kcal/mol (3601.7855 without restraints) Performing minimization step: 1754. Total energy = 3605.9787 kcal/mol (3601.5536 without restraints) Performing minimization step: 1755. Total energy = 3605.7439 kcal/mol (3601.3209 without restraints) Performing minimization step: 1756. Total energy = 3605.5101 kcal/mol (3601.0892 without restraints) Performing minimization step: 1757. Total energy = 3605.2760 kcal/mol (3600.8569 without restraints) Performing minimization step: 1758. Total energy = 3605.0424 kcal/mol (3600.6255 without restraints) Performing minimization step: 1759. Total energy = 3604.8090 kcal/mol (3600.3942 without restraints) Performing minimization step: 1760. Total energy = 3604.5761 kcal/mol (3600.1632 without restraints) Performing minimization step: 1761. Total energy = 3604.3433 kcal/mol (3599.9325 without restraints) Performing minimization step: 1762. Total energy = 3604.1105 kcal/mol (3599.7017 without restraints) Performing minimization step: 1763. Total energy = 3603.8777 kcal/mol (3599.4710 without restraints) Performing minimization step: 1764. Total energy = 3603.6452 kcal/mol (3599.2405 without restraints) Performing minimization step: 1765. Total energy = 3603.4124 kcal/mol (3599.0097 without restraints) Performing minimization step: 1766. Total energy = 3603.1797 kcal/mol (3598.7791 without restraints) Performing minimization step: 1767. Total energy = 3602.9481 kcal/mol (3598.5494 without restraints) Performing minimization step: 1768. Total energy = 3602.7163 kcal/mol (3598.3196 without restraints) Performing minimization step: 1769. Total energy = 3602.4843 kcal/mol (3598.0897 without restraints) Performing minimization step: 1770. Total energy = 3602.2529 kcal/mol (3597.8603 without restraints) Performing minimization step: 1771. Total energy = 3602.0215 kcal/mol (3597.6309 without restraints) Performing minimization step: 1772. Total energy = 3601.7902 kcal/mol (3597.4016 without restraints) Performing minimization step: 1773. Total energy = 3601.5591 kcal/mol (3597.1727 without restraints) Performing minimization step: 1774. Total energy = 3601.3281 kcal/mol (3596.9436 without restraints) Performing minimization step: 1775. Total energy = 3601.0974 kcal/mol (3596.7149 without restraints) Performing minimization step: 1776. Total energy = 3600.8665 kcal/mol (3596.4861 without restraints) Performing minimization step: 1777. Total energy = 3600.6354 kcal/mol (3596.2570 without restraints) Performing minimization step: 1778. Total energy = 3600.4047 kcal/mol (3596.0281 without restraints) Performing minimization step: 1779. Total energy = 3600.1736 kcal/mol (3595.7991 without restraints) Performing minimization step: 1780. Total energy = 3599.9434 kcal/mol (3595.5709 without restraints) Performing minimization step: 1781. Total energy = 3599.7134 kcal/mol (3595.3428 without restraints) Performing minimization step: 1782. Total energy = 3599.4833 kcal/mol (3595.1149 without restraints) Performing minimization step: 1783. Total energy = 3599.2535 kcal/mol (3594.8871 without restraints) Performing minimization step: 1784. Total energy = 3599.0241 kcal/mol (3594.6597 without restraints) Performing minimization step: 1785. Total energy = 3598.7945 kcal/mol (3594.4319 without restraints) Performing minimization step: 1786. Total energy = 3598.5651 kcal/mol (3594.2047 without restraints) Performing minimization step: 1787. Total energy = 3598.3359 kcal/mol (3593.9776 without restraints) Performing minimization step: 1788. Total energy = 3598.1078 kcal/mol (3593.7514 without restraints) Performing minimization step: 1789. Total energy = 3597.8791 kcal/mol (3593.5247 without restraints) Performing minimization step: 1790. Total energy = 3597.6503 kcal/mol (3593.2979 without restraints) Performing minimization step: 1791. Total energy = 3597.4219 kcal/mol (3593.0715 without restraints) Performing minimization step: 1792. Total energy = 3597.1936 kcal/mol (3592.8452 without restraints) Performing minimization step: 1793. Total energy = 3596.9653 kcal/mol (3592.6189 without restraints) Performing minimization step: 1794. Total energy = 3596.7374 kcal/mol (3592.3931 without restraints) Performing minimization step: 1795. Total energy = 3596.5096 kcal/mol (3592.1672 without restraints) Performing minimization step: 1796. Total energy = 3596.2817 kcal/mol (3591.9413 without restraints) Performing minimization step: 1797. Total energy = 3596.0540 kcal/mol (3591.7156 without restraints) Performing minimization step: 1798. Total energy = 3595.8264 kcal/mol (3591.4901 without restraints) Performing minimization step: 1799. Total energy = 3595.5991 kcal/mol (3591.2645 without restraints) Performing minimization step: 1800. Total energy = 3595.3717 kcal/mol (3591.0394 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 3595.1447 kcal/mol (3590.8142 without restraints) Performing minimization step: 1802. Total energy = 3594.9179 kcal/mol (3590.5895 without restraints) Performing minimization step: 1803. Total energy = 3594.6914 kcal/mol (3590.3650 without restraints) Performing minimization step: 1804. Total energy = 3594.4648 kcal/mol (3590.1404 without restraints) Performing minimization step: 1805. Total energy = 3594.2384 kcal/mol (3589.9158 without restraints) Performing minimization step: 1806. Total energy = 3594.0116 kcal/mol (3589.6910 without restraints) Performing minimization step: 1807. Total energy = 3593.7858 kcal/mol (3589.4673 without restraints) Performing minimization step: 1808. Total energy = 3593.5597 kcal/mol (3589.2432 without restraints) Performing minimization step: 1809. Total energy = 3593.3334 kcal/mol (3589.0189 without restraints) Performing minimization step: 1810. Total energy = 3593.1084 kcal/mol (3588.7959 without restraints) Performing minimization step: 1811. Total energy = 3592.8829 kcal/mol (3588.5724 without restraints) Performing minimization step: 1812. Total energy = 3592.6577 kcal/mol (3588.3492 without restraints) Performing minimization step: 1813. Total energy = 3592.4328 kcal/mol (3588.1263 without restraints) Performing minimization step: 1814. Total energy = 3592.2083 kcal/mol (3587.9037 without restraints) Performing minimization step: 1815. Total energy = 3591.9833 kcal/mol (3587.6806 without restraints) Performing minimization step: 1816. Total energy = 3591.7582 kcal/mol (3587.4576 without restraints) Performing minimization step: 1817. Total energy = 3591.5334 kcal/mol (3587.2348 without restraints) Performing minimization step: 1818. Total energy = 3591.3087 kcal/mol (3587.0118 without restraints) Performing minimization step: 1819. Total energy = 3591.0844 kcal/mol (3586.7897 without restraints) Performing minimization step: 1820. Total energy = 3590.8600 kcal/mol (3586.5673 without restraints) Performing minimization step: 1821. Total energy = 3590.6356 kcal/mol (3586.3449 without restraints) Performing minimization step: 1822. Total energy = 3590.4117 kcal/mol (3586.1229 without restraints) Performing minimization step: 1823. Total energy = 3590.1878 kcal/mol (3585.9010 without restraints) Performing minimization step: 1824. Total energy = 3589.9647 kcal/mol (3585.6799 without restraints) Performing minimization step: 1825. Total energy = 3589.7414 kcal/mol (3585.4586 without restraints) Performing minimization step: 1826. Total energy = 3589.5182 kcal/mol (3585.2374 without restraints) Performing minimization step: 1827. Total energy = 3589.2950 kcal/mol (3585.0162 without restraints) Performing minimization step: 1828. Total energy = 3589.0725 kcal/mol (3584.7956 without restraints) Performing minimization step: 1829. Total energy = 3588.8495 kcal/mol (3584.5744 without restraints) Performing minimization step: 1830. Total energy = 3588.6270 kcal/mol (3584.3539 without restraints) Performing minimization step: 1831. Total energy = 3588.4047 kcal/mol (3584.1339 without restraints) Performing minimization step: 1832. Total energy = 3588.1828 kcal/mol (3583.9140 without restraints) Performing minimization step: 1833. Total energy = 3587.9609 kcal/mol (3583.6938 without restraints) Performing minimization step: 1834. Total energy = 3587.7386 kcal/mol (3583.4734 without restraints) Performing minimization step: 1835. Total energy = 3587.5163 kcal/mol (3583.2531 without restraints) Performing minimization step: 1836. Total energy = 3587.2941 kcal/mol (3583.0328 without restraints) Performing minimization step: 1837. Total energy = 3587.0717 kcal/mol (3582.8124 without restraints) Performing minimization step: 1838. Total energy = 3586.8502 kcal/mol (3582.5929 without restraints) Performing minimization step: 1839. Total energy = 3586.6289 kcal/mol (3582.3736 without restraints) Performing minimization step: 1840. Total energy = 3586.4073 kcal/mol (3582.1540 without restraints) Performing minimization step: 1841. Total energy = 3586.1864 kcal/mol (3581.9350 without restraints) Performing minimization step: 1842. Total energy = 3585.9657 kcal/mol (3581.7162 without restraints) Performing minimization step: 1843. Total energy = 3585.7453 kcal/mol (3581.4979 without restraints) Performing minimization step: 1844. Total energy = 3585.5246 kcal/mol (3581.2791 without restraints) Performing minimization step: 1845. Total energy = 3585.3039 kcal/mol (3581.0604 without restraints) Performing minimization step: 1846. Total energy = 3585.0834 kcal/mol (3580.8416 without restraints) Performing minimization step: 1847. Total energy = 3584.8632 kcal/mol (3580.6235 without restraints) Performing minimization step: 1848. Total energy = 3584.6425 kcal/mol (3580.4048 without restraints) Performing minimization step: 1849. Total energy = 3584.4222 kcal/mol (3580.1864 without restraints) Performing minimization step: 1850. Total energy = 3584.2020 kcal/mol (3579.9682 without restraints) Performing minimization step: 1851. Total energy = 3583.9821 kcal/mol (3579.7503 without restraints) Performing minimization step: 1852. Total energy = 3583.7622 kcal/mol (3579.5323 without restraints) Performing minimization step: 1853. Total energy = 3583.5427 kcal/mol (3579.3147 without restraints) Performing minimization step: 1854. Total energy = 3583.3235 kcal/mol (3579.0975 without restraints) Performing minimization step: 1855. Total energy = 3583.1044 kcal/mol (3578.8804 without restraints) Performing minimization step: 1856. Total energy = 3582.8850 kcal/mol (3578.6629 without restraints) Performing minimization step: 1857. Total energy = 3582.6660 kcal/mol (3578.4458 without restraints) Performing minimization step: 1858. Total energy = 3582.4470 kcal/mol (3578.2288 without restraints) Performing minimization step: 1859. Total energy = 3582.2282 kcal/mol (3578.0118 without restraints) Performing minimization step: 1860. Total energy = 3582.0093 kcal/mol (3577.7947 without restraints) Performing minimization step: 1861. Total energy = 3581.7909 kcal/mol (3577.5784 without restraints) Performing minimization step: 1862. Total energy = 3581.5728 kcal/mol (3577.3623 without restraints) Performing minimization step: 1863. Total energy = 3581.3544 kcal/mol (3577.1457 without restraints) Performing minimization step: 1864. Total energy = 3581.1364 kcal/mol (3576.9299 without restraints) Performing minimization step: 1865. Total energy = 3580.9182 kcal/mol (3576.7135 without restraints) Performing minimization step: 1866. Total energy = 3580.7002 kcal/mol (3576.4975 without restraints) Performing minimization step: 1867. Total energy = 3580.4820 kcal/mol (3576.2812 without restraints) Performing minimization step: 1868. Total energy = 3580.2645 kcal/mol (3576.0657 without restraints) Performing minimization step: 1869. Total energy = 3580.0472 kcal/mol (3575.8502 without restraints) Performing minimization step: 1870. Total energy = 3579.8300 kcal/mol (3575.6350 without restraints) Performing minimization step: 1871. Total energy = 3579.6130 kcal/mol (3575.4199 without restraints) Performing minimization step: 1872. Total energy = 3579.3963 kcal/mol (3575.2052 without restraints) Performing minimization step: 1873. Total energy = 3579.1791 kcal/mol (3574.9899 without restraints) Performing minimization step: 1874. Total energy = 3578.9625 kcal/mol (3574.7752 without restraints) Performing minimization step: 1875. Total energy = 3578.7455 kcal/mol (3574.5602 without restraints) Performing minimization step: 1876. Total energy = 3578.5293 kcal/mol (3574.3459 without restraints) Performing minimization step: 1877. Total energy = 3578.3131 kcal/mol (3574.1317 without restraints) Performing minimization step: 1878. Total energy = 3578.0972 kcal/mol (3573.9176 without restraints) Performing minimization step: 1879. Total energy = 3577.8810 kcal/mol (3573.7033 without restraints) Performing minimization step: 1880. Total energy = 3577.6654 kcal/mol (3573.4897 without restraints) Performing minimization step: 1881. Total energy = 3577.4499 kcal/mol (3573.2761 without restraints) Performing minimization step: 1882. Total energy = 3577.2345 kcal/mol (3573.0626 without restraints) Performing minimization step: 1883. Total energy = 3577.0191 kcal/mol (3572.8491 without restraints) Performing minimization step: 1884. Total energy = 3576.8031 kcal/mol (3572.6351 without restraints) Performing minimization step: 1885. Total energy = 3576.5876 kcal/mol (3572.4215 without restraints) Performing minimization step: 1886. Total energy = 3576.3724 kcal/mol (3572.2080 without restraints) Performing minimization step: 1887. Total energy = 3576.1571 kcal/mol (3571.9947 without restraints) Performing minimization step: 1888. Total energy = 3575.9423 kcal/mol (3571.7819 without restraints) Performing minimization step: 1889. Total energy = 3575.7274 kcal/mol (3571.5689 without restraints) Performing minimization step: 1890. Total energy = 3575.5127 kcal/mol (3571.3561 without restraints) Performing minimization step: 1891. Total energy = 3575.2983 kcal/mol (3571.1436 without restraints) Performing minimization step: 1892. Total energy = 3575.0839 kcal/mol (3570.9311 without restraints) Performing minimization step: 1893. Total energy = 3574.8696 kcal/mol (3570.7188 without restraints) Performing minimization step: 1894. Total energy = 3574.6554 kcal/mol (3570.5064 without restraints) Performing minimization step: 1895. Total energy = 3574.4417 kcal/mol (3570.2946 without restraints) Performing minimization step: 1896. Total energy = 3574.2280 kcal/mol (3570.0828 without restraints) Performing minimization step: 1897. Total energy = 3574.0149 kcal/mol (3569.8719 without restraints) Performing minimization step: 1898. Total energy = 3573.8014 kcal/mol (3569.6601 without restraints) Performing minimization step: 1899. Total energy = 3573.5876 kcal/mol (3569.4480 without restraints) Performing minimization step: 1900. Total energy = 3573.3744 kcal/mol (3569.2370 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 3573.1613 kcal/mol (3569.0257 without restraints) Performing minimization step: 1902. Total energy = 3572.9484 kcal/mol (3568.8147 without restraints) Performing minimization step: 1903. Total energy = 3572.7358 kcal/mol (3568.6040 without restraints) Performing minimization step: 1904. Total energy = 3572.5233 kcal/mol (3568.3934 without restraints) Performing minimization step: 1905. Total energy = 3572.3106 kcal/mol (3568.1826 without restraints) Performing minimization step: 1906. Total energy = 3572.0981 kcal/mol (3567.9718 without restraints) Performing minimization step: 1907. Total energy = 3571.8856 kcal/mol (3567.7613 without restraints) Performing minimization step: 1908. Total energy = 3571.6733 kcal/mol (3567.5510 without restraints) Performing minimization step: 1909. Total energy = 3571.4612 kcal/mol (3567.3408 without restraints) Performing minimization step: 1910. Total energy = 3571.2493 kcal/mol (3567.1308 without restraints) Performing minimization step: 1911. Total energy = 3571.0379 kcal/mol (3566.9213 without restraints) Performing minimization step: 1912. Total energy = 3570.8263 kcal/mol (3566.7116 without restraints) Performing minimization step: 1913. Total energy = 3570.6144 kcal/mol (3566.5015 without restraints) Performing minimization step: 1914. Total energy = 3570.4029 kcal/mol (3566.2920 without restraints) Performing minimization step: 1915. Total energy = 3570.1916 kcal/mol (3566.0825 without restraints) Performing minimization step: 1916. Total energy = 3569.9796 kcal/mol (3565.8724 without restraints) Performing minimization step: 1917. Total energy = 3569.7690 kcal/mol (3565.6637 without restraints) Performing minimization step: 1918. Total energy = 3569.5579 kcal/mol (3565.4545 without restraints) Performing minimization step: 1919. Total energy = 3569.3468 kcal/mol (3565.2452 without restraints) Performing minimization step: 1920. Total energy = 3569.1360 kcal/mol (3565.0364 without restraints) Performing minimization step: 1921. Total energy = 3568.9249 kcal/mol (3564.8272 without restraints) Performing minimization step: 1922. Total energy = 3568.7149 kcal/mol (3564.6192 without restraints) Performing minimization step: 1923. Total energy = 3568.5049 kcal/mol (3564.4109 without restraints) Performing minimization step: 1924. Total energy = 3568.2948 kcal/mol (3564.2027 without restraints) Performing minimization step: 1925. Total energy = 3568.0853 kcal/mol (3563.9953 without restraints) Performing minimization step: 1926. Total energy = 3567.8758 kcal/mol (3563.7875 without restraints) Performing minimization step: 1927. Total energy = 3567.6660 kcal/mol (3563.5795 without restraints) Performing minimization step: 1928. Total energy = 3567.4561 kcal/mol (3563.3714 without restraints) Performing minimization step: 1929. Total energy = 3567.2464 kcal/mol (3563.1638 without restraints) Performing minimization step: 1930. Total energy = 3567.0368 kcal/mol (3562.9560 without restraints) Performing minimization step: 1931. Total energy = 3566.8275 kcal/mol (3562.7485 without restraints) Performing minimization step: 1932. Total energy = 3566.6178 kcal/mol (3562.5408 without restraints) Performing minimization step: 1933. Total energy = 3566.4080 kcal/mol (3562.3328 without restraints) Performing minimization step: 1934. Total energy = 3566.1989 kcal/mol (3562.1256 without restraints) Performing minimization step: 1935. Total energy = 3565.9902 kcal/mol (3561.9188 without restraints) Performing minimization step: 1936. Total energy = 3565.7816 kcal/mol (3561.7121 without restraints) Performing minimization step: 1937. Total energy = 3565.5731 kcal/mol (3561.5053 without restraints) Performing minimization step: 1938. Total energy = 3565.3646 kcal/mol (3561.2988 without restraints) Performing minimization step: 1939. Total energy = 3565.1564 kcal/mol (3561.0924 without restraints) Performing minimization step: 1940. Total energy = 3564.9481 kcal/mol (3560.8859 without restraints) Performing minimization step: 1941. Total energy = 3564.7400 kcal/mol (3560.6798 without restraints) Performing minimization step: 1942. Total energy = 3564.5322 kcal/mol (3560.4739 without restraints) Performing minimization step: 1943. Total energy = 3564.3241 kcal/mol (3560.2677 without restraints) Performing minimization step: 1944. Total energy = 3564.1166 kcal/mol (3560.0619 without restraints) Performing minimization step: 1945. Total energy = 3563.9090 kcal/mol (3559.8563 without restraints) Performing minimization step: 1946. Total energy = 3563.7017 kcal/mol (3559.6508 without restraints) Performing minimization step: 1947. Total energy = 3563.4943 kcal/mol (3559.4453 without restraints) Performing minimization step: 1948. Total energy = 3563.2865 kcal/mol (3559.2393 without restraints) Performing minimization step: 1949. Total energy = 3563.0796 kcal/mol (3559.0342 without restraints) Performing minimization step: 1950. Total energy = 3562.8725 kcal/mol (3558.8291 without restraints) Performing minimization step: 1951. Total energy = 3562.6658 kcal/mol (3558.6241 without restraints) Performing minimization step: 1952. Total energy = 3562.4591 kcal/mol (3558.4193 without restraints) Performing minimization step: 1953. Total energy = 3562.2525 kcal/mol (3558.2147 without restraints) Performing minimization step: 1954. Total energy = 3562.0460 kcal/mol (3558.0100 without restraints) Performing minimization step: 1955. Total energy = 3561.8397 kcal/mol (3557.8055 without restraints) Performing minimization step: 1956. Total energy = 3561.6335 kcal/mol (3557.6012 without restraints) Performing minimization step: 1957. Total energy = 3561.4279 kcal/mol (3557.3974 without restraints) Performing minimization step: 1958. Total energy = 3561.2223 kcal/mol (3557.1937 without restraints) Performing minimization step: 1959. Total energy = 3561.0165 kcal/mol (3556.9897 without restraints) Performing minimization step: 1960. Total energy = 3560.8104 kcal/mol (3556.7855 without restraints) Performing minimization step: 1961. Total energy = 3560.6048 kcal/mol (3556.5818 without restraints) Performing minimization step: 1962. Total energy = 3560.3994 kcal/mol (3556.3782 without restraints) Performing minimization step: 1963. Total energy = 3560.1939 kcal/mol (3556.1746 without restraints) Performing minimization step: 1964. Total energy = 3559.9887 kcal/mol (3555.9712 without restraints) Performing minimization step: 1965. Total energy = 3559.7836 kcal/mol (3555.7679 without restraints) Performing minimization step: 1966. Total energy = 3559.5787 kcal/mol (3555.5649 without restraints) Performing minimization step: 1967. Total energy = 3559.3739 kcal/mol (3555.3618 without restraints) Performing minimization step: 1968. Total energy = 3559.1688 kcal/mol (3555.1585 without restraints) Performing minimization step: 1969. Total energy = 3558.9641 kcal/mol (3554.9558 without restraints) Performing minimization step: 1970. Total energy = 3558.7595 kcal/mol (3554.7530 without restraints) Performing minimization step: 1971. Total energy = 3558.5553 kcal/mol (3554.5506 without restraints) Performing minimization step: 1972. Total energy = 3558.3508 kcal/mol (3554.3480 without restraints) Performing minimization step: 1973. Total energy = 3558.1468 kcal/mol (3554.1459 without restraints) Performing minimization step: 1974. Total energy = 3557.9423 kcal/mol (3553.9431 without restraints) Performing minimization step: 1975. Total energy = 3557.7386 kcal/mol (3553.7413 without restraints) Performing minimization step: 1976. Total energy = 3557.5351 kcal/mol (3553.5398 without restraints) Performing minimization step: 1977. Total energy = 3557.3312 kcal/mol (3553.3377 without restraints) Performing minimization step: 1978. Total energy = 3557.1277 kcal/mol (3553.1360 without restraints) Performing minimization step: 1979. Total energy = 3556.9247 kcal/mol (3552.9348 without restraints) Performing minimization step: 1980. Total energy = 3556.7211 kcal/mol (3552.7331 without restraints) Performing minimization step: 1981. Total energy = 3556.5176 kcal/mol (3552.5313 without restraints) Performing minimization step: 1982. Total energy = 3556.3150 kcal/mol (3552.3304 without restraints) Performing minimization step: 1983. Total energy = 3556.1119 kcal/mol (3552.1291 without restraints) Performing minimization step: 1984. Total energy = 3555.9090 kcal/mol (3551.9282 without restraints) Performing minimization step: 1985. Total energy = 3555.7062 kcal/mol (3551.7273 without restraints) Performing minimization step: 1986. Total energy = 3555.5034 kcal/mol (3551.5261 without restraints) Performing minimization step: 1987. Total energy = 3555.3008 kcal/mol (3551.3254 without restraints) Performing minimization step: 1988. Total energy = 3555.0985 kcal/mol (3551.1252 without restraints) Performing minimization step: 1989. Total energy = 3554.8965 kcal/mol (3550.9248 without restraints) Performing minimization step: 1990. Total energy = 3554.6947 kcal/mol (3550.7248 without restraints) Performing minimization step: 1991. Total energy = 3554.4929 kcal/mol (3550.5248 without restraints) Performing minimization step: 1992. Total energy = 3554.2912 kcal/mol (3550.3250 without restraints) Performing minimization step: 1993. Total energy = 3554.0893 kcal/mol (3550.1249 without restraints) Performing minimization step: 1994. Total energy = 3553.8866 kcal/mol (3549.9239 without restraints) Performing minimization step: 1995. Total energy = 3553.6850 kcal/mol (3549.7242 without restraints) Performing minimization step: 1996. Total energy = 3553.4832 kcal/mol (3549.5243 without restraints) Performing minimization step: 1997. Total energy = 3553.2815 kcal/mol (3549.3243 without restraints) Performing minimization step: 1998. Total energy = 3553.0798 kcal/mol (3549.1242 without restraints) Performing minimization step: 1999. Total energy = 3552.8785 kcal/mol (3548.9250 without restraints) Performing minimization step: 2000. Total energy = 3552.6775 kcal/mol (3548.7258 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 3552.4767 kcal/mol (3548.5268 without restraints) Performing minimization step: 2002. Total energy = 3552.2761 kcal/mol (3548.3280 without restraints) Performing minimization step: 2003. Total energy = 3552.0760 kcal/mol (3548.1297 without restraints) Performing minimization step: 2004. Total energy = 3551.8755 kcal/mol (3547.9310 without restraints) Performing minimization step: 2005. Total energy = 3551.6752 kcal/mol (3547.7326 without restraints) Performing minimization step: 2006. Total energy = 3551.4747 kcal/mol (3547.5338 without restraints) Performing minimization step: 2007. Total energy = 3551.2745 kcal/mol (3547.3354 without restraints) Performing minimization step: 2008. Total energy = 3551.0749 kcal/mol (3547.1376 without restraints) Performing minimization step: 2009. Total energy = 3550.8754 kcal/mol (3546.9399 without restraints) Performing minimization step: 2010. Total energy = 3550.6758 kcal/mol (3546.7422 without restraints) Performing minimization step: 2011. Total energy = 3550.4756 kcal/mol (3546.5437 without restraints) Performing minimization step: 2012. Total energy = 3550.2758 kcal/mol (3546.3458 without restraints) Performing minimization step: 2013. Total energy = 3550.0764 kcal/mol (3546.1482 without restraints) Performing minimization step: 2014. Total energy = 3549.8770 kcal/mol (3545.9506 without restraints) Performing minimization step: 2015. Total energy = 3549.6773 kcal/mol (3545.7526 without restraints) Performing minimization step: 2016. Total energy = 3549.4782 kcal/mol (3545.5553 without restraints) Performing minimization step: 2017. Total energy = 3549.2791 kcal/mol (3545.3579 without restraints) Performing minimization step: 2018. Total energy = 3549.0799 kcal/mol (3545.1606 without restraints) Performing minimization step: 2019. Total energy = 3548.8809 kcal/mol (3544.9635 without restraints) Performing minimization step: 2020. Total energy = 3548.6822 kcal/mol (3544.7666 without restraints) Performing minimization step: 2021. Total energy = 3548.4837 kcal/mol (3544.5698 without restraints) Performing minimization step: 2022. Total energy = 3548.2853 kcal/mol (3544.3733 without restraints) Performing minimization step: 2023. Total energy = 3548.0870 kcal/mol (3544.1768 without restraints) Performing minimization step: 2024. Total energy = 3547.8883 kcal/mol (3543.9798 without restraints) Performing minimization step: 2025. Total energy = 3547.6902 kcal/mol (3543.7835 without restraints) Performing minimization step: 2026. Total energy = 3547.4923 kcal/mol (3543.5873 without restraints) Performing minimization step: 2027. Total energy = 3547.2942 kcal/mol (3543.3912 without restraints) Performing minimization step: 2028. Total energy = 3547.0966 kcal/mol (3543.1953 without restraints) Performing minimization step: 2029. Total energy = 3546.8989 kcal/mol (3542.9993 without restraints) Performing minimization step: 2030. Total energy = 3546.7015 kcal/mol (3542.8037 without restraints) Performing minimization step: 2031. Total energy = 3546.5040 kcal/mol (3542.6079 without restraints) Performing minimization step: 2032. Total energy = 3546.3066 kcal/mol (3542.4124 without restraints) Performing minimization step: 2033. Total energy = 3546.1094 kcal/mol (3542.2170 without restraints) Performing minimization step: 2034. Total energy = 3545.9124 kcal/mol (3542.0218 without restraints) Performing minimization step: 2035. Total energy = 3545.7152 kcal/mol (3541.8263 without restraints) Performing minimization step: 2036. Total energy = 3545.5183 kcal/mol (3541.6312 without restraints) Performing minimization step: 2037. Total energy = 3545.3212 kcal/mol (3541.4359 without restraints) Performing minimization step: 2038. Total energy = 3545.1245 kcal/mol (3541.2410 without restraints) Performing minimization step: 2039. Total energy = 3544.9280 kcal/mol (3541.0463 without restraints) Performing minimization step: 2040. Total energy = 3544.7317 kcal/mol (3540.8517 without restraints) Performing minimization step: 2041. Total energy = 3544.5351 kcal/mol (3540.6569 without restraints) Performing minimization step: 2042. Total energy = 3544.3387 kcal/mol (3540.4622 without restraints) Performing minimization step: 2043. Total energy = 3544.1427 kcal/mol (3540.2682 without restraints) Performing minimization step: 2044. Total energy = 3543.9470 kcal/mol (3540.0740 without restraints) Performing minimization step: 2045. Total energy = 3543.7511 kcal/mol (3539.8800 without restraints) Performing minimization step: 2046. Total energy = 3543.5554 kcal/mol (3539.6860 without restraints) Performing minimization step: 2047. Total energy = 3543.3595 kcal/mol (3539.4919 without restraints) Performing minimization step: 2048. Total energy = 3543.1641 kcal/mol (3539.2983 without restraints) Performing minimization step: 2049. Total energy = 3542.9685 kcal/mol (3539.1044 without restraints) Performing minimization step: 2050. Total energy = 3542.7730 kcal/mol (3538.9107 without restraints) Performing minimization step: 2051. Total energy = 3542.5780 kcal/mol (3538.7174 without restraints) Performing minimization step: 2052. Total energy = 3542.3824 kcal/mol (3538.5237 without restraints) Performing minimization step: 2053. Total energy = 3542.1878 kcal/mol (3538.3308 without restraints) Performing minimization step: 2054. Total energy = 3541.9926 kcal/mol (3538.1374 without restraints) Performing minimization step: 2055. Total energy = 3541.7980 kcal/mol (3537.9446 without restraints) Performing minimization step: 2056. Total energy = 3541.6036 kcal/mol (3537.7520 without restraints) Performing minimization step: 2057. Total energy = 3541.4091 kcal/mol (3537.5591 without restraints) Performing minimization step: 2058. Total energy = 3541.2143 kcal/mol (3537.3660 without restraints) Performing minimization step: 2059. Total energy = 3541.0199 kcal/mol (3537.1735 without restraints) Performing minimization step: 2060. Total energy = 3540.8258 kcal/mol (3536.9810 without restraints) Performing minimization step: 2061. Total energy = 3540.6314 kcal/mol (3536.7884 without restraints) Performing minimization step: 2062. Total energy = 3540.4371 kcal/mol (3536.5959 without restraints) Performing minimization step: 2063. Total energy = 3540.2434 kcal/mol (3536.4039 without restraints) Performing minimization step: 2064. Total energy = 3540.0496 kcal/mol (3536.2119 without restraints) Performing minimization step: 2065. Total energy = 3539.8552 kcal/mol (3536.0192 without restraints) Performing minimization step: 2066. Total energy = 3539.6615 kcal/mol (3535.8273 without restraints) Performing minimization step: 2067. Total energy = 3539.4674 kcal/mol (3535.6350 without restraints) Performing minimization step: 2068. Total energy = 3539.2743 kcal/mol (3535.4435 without restraints) Performing minimization step: 2069. Total energy = 3539.0805 kcal/mol (3535.2516 without restraints) Performing minimization step: 2070. Total energy = 3538.8863 kcal/mol (3535.0592 without restraints) Performing minimization step: 2071. Total energy = 3538.6938 kcal/mol (3534.8684 without restraints) Performing minimization step: 2072. Total energy = 3538.5006 kcal/mol (3534.6768 without restraints) Performing minimization step: 2073. Total energy = 3538.3077 kcal/mol (3534.4857 without restraints) Performing minimization step: 2074. Total energy = 3538.1151 kcal/mol (3534.2949 without restraints) Performing minimization step: 2075. Total energy = 3537.9225 kcal/mol (3534.1041 without restraints) Performing minimization step: 2076. Total energy = 3537.7299 kcal/mol (3533.9133 without restraints) Performing minimization step: 2077. Total energy = 3537.5378 kcal/mol (3533.7227 without restraints) Performing minimization step: 2078. Total energy = 3537.3451 kcal/mol (3533.5319 without restraints) Performing minimization step: 2079. Total energy = 3537.1525 kcal/mol (3533.3409 without restraints) Performing minimization step: 2080. Total energy = 3536.9600 kcal/mol (3533.1502 without restraints) Performing minimization step: 2081. Total energy = 3536.7684 kcal/mol (3532.9604 without restraints) Performing minimization step: 2082. Total energy = 3536.5764 kcal/mol (3532.7702 without restraints) Performing minimization step: 2083. Total energy = 3536.3844 kcal/mol (3532.5799 without restraints) Performing minimization step: 2084. Total energy = 3536.1925 kcal/mol (3532.3896 without restraints) Performing minimization step: 2085. Total energy = 3536.0009 kcal/mol (3532.1998 without restraints) Performing minimization step: 2086. Total energy = 3535.8090 kcal/mol (3532.0095 without restraints) Performing minimization step: 2087. Total energy = 3535.6173 kcal/mol (3531.8197 without restraints) Performing minimization step: 2088. Total energy = 3535.4261 kcal/mol (3531.6302 without restraints) Performing minimization step: 2089. Total energy = 3535.2350 kcal/mol (3531.4407 without restraints) Performing minimization step: 2090. Total energy = 3535.0442 kcal/mol (3531.2517 without restraints) Performing minimization step: 2091. Total energy = 3534.8531 kcal/mol (3531.0624 without restraints) Performing minimization step: 2092. Total energy = 3534.6620 kcal/mol (3530.8730 without restraints) Performing minimization step: 2093. Total energy = 3534.4713 kcal/mol (3530.6840 without restraints) Performing minimization step: 2094. Total energy = 3534.2807 kcal/mol (3530.4952 without restraints) Performing minimization step: 2095. Total energy = 3534.0896 kcal/mol (3530.3056 without restraints) Performing minimization step: 2096. Total energy = 3533.8989 kcal/mol (3530.1169 without restraints) Performing minimization step: 2097. Total energy = 3533.7082 kcal/mol (3529.9279 without restraints) Performing minimization step: 2098. Total energy = 3533.5172 kcal/mol (3529.7386 without restraints) Performing minimization step: 2099. Total energy = 3533.3270 kcal/mol (3529.5501 without restraints) Performing minimization step: 2100. Total energy = 3533.1368 kcal/mol (3529.3615 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 3532.9469 kcal/mol (3529.1734 without restraints) Performing minimization step: 2102. Total energy = 3532.7571 kcal/mol (3528.9853 without restraints) Performing minimization step: 2103. Total energy = 3532.5674 kcal/mol (3528.7973 without restraints) Performing minimization step: 2104. Total energy = 3532.3781 kcal/mol (3528.6099 without restraints) Performing minimization step: 2105. Total energy = 3532.1886 kcal/mol (3528.4219 without restraints) Performing minimization step: 2106. Total energy = 3531.9995 kcal/mol (3528.2346 without restraints) Performing minimization step: 2107. Total energy = 3531.8104 kcal/mol (3528.0472 without restraints) Performing minimization step: 2108. Total energy = 3531.6213 kcal/mol (3527.8598 without restraints) Performing minimization step: 2109. Total energy = 3531.4324 kcal/mol (3527.6725 without restraints) Performing minimization step: 2110. Total energy = 3531.2431 kcal/mol (3527.4850 without restraints) Performing minimization step: 2111. Total energy = 3531.0542 kcal/mol (3527.2978 without restraints) Performing minimization step: 2112. Total energy = 3530.8652 kcal/mol (3527.1105 without restraints) Performing minimization step: 2113. Total energy = 3530.6766 kcal/mol (3526.9237 without restraints) Performing minimization step: 2114. Total energy = 3530.4879 kcal/mol (3526.7367 without restraints) Performing minimization step: 2115. Total energy = 3530.2998 kcal/mol (3526.5502 without restraints) Performing minimization step: 2116. Total energy = 3530.1111 kcal/mol (3526.3632 without restraints) Performing minimization step: 2117. Total energy = 3529.9228 kcal/mol (3526.1767 without restraints) Performing minimization step: 2118. Total energy = 3529.7346 kcal/mol (3525.9901 without restraints) Performing minimization step: 2119. Total energy = 3529.5462 kcal/mol (3525.8034 without restraints) Performing minimization step: 2120. Total energy = 3529.3577 kcal/mol (3525.6166 without restraints) Performing minimization step: 2121. Total energy = 3529.1694 kcal/mol (3525.4300 without restraints) Performing minimization step: 2122. Total energy = 3528.9812 kcal/mol (3525.2435 without restraints) Performing minimization step: 2123. Total energy = 3528.7935 kcal/mol (3525.0575 without restraints) Performing minimization step: 2124. Total energy = 3528.6059 kcal/mol (3524.8716 without restraints) Performing minimization step: 2125. Total energy = 3528.4184 kcal/mol (3524.6857 without restraints) Performing minimization step: 2126. Total energy = 3528.2305 kcal/mol (3524.4995 without restraints) Performing minimization step: 2127. Total energy = 3528.0429 kcal/mol (3524.3136 without restraints) Performing minimization step: 2128. Total energy = 3527.8550 kcal/mol (3524.1272 without restraints) Performing minimization step: 2129. Total energy = 3527.6674 kcal/mol (3523.9415 without restraints) Performing minimization step: 2130. Total energy = 3527.4803 kcal/mol (3523.7562 without restraints) Performing minimization step: 2131. Total energy = 3527.2931 kcal/mol (3523.5706 without restraints) Performing minimization step: 2132. Total energy = 3527.1062 kcal/mol (3523.3854 without restraints) Performing minimization step: 2133. Total energy = 3526.9198 kcal/mol (3523.2007 without restraints) Performing minimization step: 2134. Total energy = 3526.7329 kcal/mol (3523.0155 without restraints) Performing minimization step: 2135. Total energy = 3526.5464 kcal/mol (3522.8306 without restraints) Performing minimization step: 2136. Total energy = 3526.3595 kcal/mol (3522.6456 without restraints) Performing minimization step: 2137. Total energy = 3526.1733 kcal/mol (3522.4610 without restraints) Performing minimization step: 2138. Total energy = 3525.9864 kcal/mol (3522.2757 without restraints) Performing minimization step: 2139. Total energy = 3525.8003 kcal/mol (3522.0913 without restraints) Performing minimization step: 2140. Total energy = 3525.6144 kcal/mol (3521.9072 without restraints) Performing minimization step: 2141. Total energy = 3525.4288 kcal/mol (3521.7231 without restraints) Performing minimization step: 2142. Total energy = 3525.2428 kcal/mol (3521.5388 without restraints) Performing minimization step: 2143. Total energy = 3525.0566 kcal/mol (3521.3543 without restraints) Performing minimization step: 2144. Total energy = 3524.8702 kcal/mol (3521.1696 without restraints) Performing minimization step: 2145. Total energy = 3524.6846 kcal/mol (3520.9856 without restraints) Performing minimization step: 2146. Total energy = 3524.4993 kcal/mol (3520.8020 without restraints) Performing minimization step: 2147. Total energy = 3524.3135 kcal/mol (3520.6179 without restraints) Performing minimization step: 2148. Total energy = 3524.1284 kcal/mol (3520.4344 without restraints) Performing minimization step: 2149. Total energy = 3523.9433 kcal/mol (3520.2511 without restraints) Performing minimization step: 2150. Total energy = 3523.7584 kcal/mol (3520.0679 without restraints) Performing minimization step: 2151. Total energy = 3523.5735 kcal/mol (3519.8846 without restraints) Performing minimization step: 2152. Total energy = 3523.3886 kcal/mol (3519.7014 without restraints) Performing minimization step: 2153. Total energy = 3523.2033 kcal/mol (3519.5177 without restraints) Performing minimization step: 2154. Total energy = 3523.0186 kcal/mol (3519.3348 without restraints) Performing minimization step: 2155. Total energy = 3522.8341 kcal/mol (3519.1518 without restraints) Performing minimization step: 2156. Total energy = 3522.6496 kcal/mol (3518.9690 without restraints) Performing minimization step: 2157. Total energy = 3522.4655 kcal/mol (3518.7866 without restraints) Performing minimization step: 2158. Total energy = 3522.2813 kcal/mol (3518.6040 without restraints) Performing minimization step: 2159. Total energy = 3522.0973 kcal/mol (3518.4217 without restraints) Performing minimization step: 2160. Total energy = 3521.9131 kcal/mol (3518.2391 without restraints) Performing minimization step: 2161. Total energy = 3521.7296 kcal/mol (3518.0572 without restraints) Performing minimization step: 2162. Total energy = 3521.5455 kcal/mol (3517.8749 without restraints) Performing minimization step: 2163. Total energy = 3521.3612 kcal/mol (3517.6922 without restraints) Performing minimization step: 2164. Total energy = 3521.1773 kcal/mol (3517.5099 without restraints) Performing minimization step: 2165. Total energy = 3520.9937 kcal/mol (3517.3280 without restraints) Performing minimization step: 2166. Total energy = 3520.8099 kcal/mol (3517.1459 without restraints) Performing minimization step: 2167. Total energy = 3520.6264 kcal/mol (3516.9641 without restraints) Performing minimization step: 2168. Total energy = 3520.4431 kcal/mol (3516.7824 without restraints) Performing minimization step: 2169. Total energy = 3520.2597 kcal/mol (3516.6005 without restraints) Performing minimization step: 2170. Total energy = 3520.0764 kcal/mol (3516.4190 without restraints) Performing minimization step: 2171. Total energy = 3519.8931 kcal/mol (3516.2373 without restraints) Performing minimization step: 2172. Total energy = 3519.7100 kcal/mol (3516.0559 without restraints) Performing minimization step: 2173. Total energy = 3519.5274 kcal/mol (3515.8749 without restraints) Performing minimization step: 2174. Total energy = 3519.3446 kcal/mol (3515.6938 without restraints) Performing minimization step: 2175. Total energy = 3519.1617 kcal/mol (3515.5125 without restraints) Performing minimization step: 2176. Total energy = 3518.9789 kcal/mol (3515.3314 without restraints) Performing minimization step: 2177. Total energy = 3518.7965 kcal/mol (3515.1506 without restraints) Performing minimization step: 2178. Total energy = 3518.6141 kcal/mol (3514.9699 without restraints) Performing minimization step: 2179. Total energy = 3518.4318 kcal/mol (3514.7892 without restraints) Performing minimization step: 2180. Total energy = 3518.2494 kcal/mol (3514.6083 without restraints) Performing minimization step: 2181. Total energy = 3518.0670 kcal/mol (3514.4277 without restraints) Performing minimization step: 2182. Total energy = 3517.8851 kcal/mol (3514.2475 without restraints) Performing minimization step: 2183. Total energy = 3517.7032 kcal/mol (3514.0672 without restraints) Performing minimization step: 2184. Total energy = 3517.5212 kcal/mol (3513.8867 without restraints) Performing minimization step: 2185. Total energy = 3517.3396 kcal/mol (3513.7069 without restraints) Performing minimization step: 2186. Total energy = 3517.1579 kcal/mol (3513.5267 without restraints) Performing minimization step: 2187. Total energy = 3516.9763 kcal/mol (3513.3468 without restraints) Performing minimization step: 2188. Total energy = 3516.7950 kcal/mol (3513.1671 without restraints) Performing minimization step: 2189. Total energy = 3516.6132 kcal/mol (3512.9868 without restraints) Performing minimization step: 2190. Total energy = 3516.4318 kcal/mol (3512.8072 without restraints) Performing minimization step: 2191. Total energy = 3516.2506 kcal/mol (3512.6276 without restraints) Performing minimization step: 2192. Total energy = 3516.0697 kcal/mol (3512.4483 without restraints) Performing minimization step: 2193. Total energy = 3515.8884 kcal/mol (3512.2687 without restraints) Performing minimization step: 2194. Total energy = 3515.7077 kcal/mol (3512.0897 without restraints) Performing minimization step: 2195. Total energy = 3515.5268 kcal/mol (3511.9103 without restraints) Performing minimization step: 2196. Total energy = 3515.3460 kcal/mol (3511.7312 without restraints) Performing minimization step: 2197. Total energy = 3515.1650 kcal/mol (3511.5518 without restraints) Performing minimization step: 2198. Total energy = 3514.9842 kcal/mol (3511.3726 without restraints) Performing minimization step: 2199. Total energy = 3514.8037 kcal/mol (3511.1937 without restraints) Performing minimization step: 2200. Total energy = 3514.6233 kcal/mol (3511.0151 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 3514.4426 kcal/mol (3510.8359 without restraints) Performing minimization step: 2202. Total energy = 3514.2624 kcal/mol (3510.6573 without restraints) Performing minimization step: 2203. Total energy = 3514.0819 kcal/mol (3510.4784 without restraints) Performing minimization step: 2204. Total energy = 3513.9016 kcal/mol (3510.2996 without restraints) Performing minimization step: 2205. Total energy = 3513.7217 kcal/mol (3510.1216 without restraints) Performing minimization step: 2206. Total energy = 3513.5423 kcal/mol (3509.9436 without restraints) Performing minimization step: 2207. Total energy = 3513.3625 kcal/mol (3509.7654 without restraints) Performing minimization step: 2208. Total energy = 3513.1824 kcal/mol (3509.5869 without restraints) Performing minimization step: 2209. Total energy = 3513.0029 kcal/mol (3509.4091 without restraints) Performing minimization step: 2210. Total energy = 3512.8231 kcal/mol (3509.2309 without restraints) Performing minimization step: 2211. Total energy = 3512.6432 kcal/mol (3509.0524 without restraints) Performing minimization step: 2212. Total energy = 3512.4637 kcal/mol (3508.8746 without restraints) Performing minimization step: 2213. Total energy = 3512.2843 kcal/mol (3508.6969 without restraints) Performing minimization step: 2214. Total energy = 3512.1049 kcal/mol (3508.5191 without restraints) Performing minimization step: 2215. Total energy = 3511.9258 kcal/mol (3508.3416 without restraints) Performing minimization step: 2216. Total energy = 3511.7465 kcal/mol (3508.1639 without restraints) Performing minimization step: 2217. Total energy = 3511.5680 kcal/mol (3507.9873 without restraints) Performing minimization step: 2218. Total energy = 3511.3892 kcal/mol (3507.8098 without restraints) Performing minimization step: 2219. Total energy = 3511.2099 kcal/mol (3507.6321 without restraints) Performing minimization step: 2220. Total energy = 3511.0314 kcal/mol (3507.4554 without restraints) Performing minimization step: 2221. Total energy = 3510.8529 kcal/mol (3507.2783 without restraints) Performing minimization step: 2222. Total energy = 3510.6743 kcal/mol (3507.1013 without restraints) Performing minimization step: 2223. Total energy = 3510.4956 kcal/mol (3506.9243 without restraints) Performing minimization step: 2224. Total energy = 3510.3171 kcal/mol (3506.7474 without restraints) Performing minimization step: 2225. Total energy = 3510.1392 kcal/mol (3506.5709 without restraints) Performing minimization step: 2226. Total energy = 3509.9610 kcal/mol (3506.3944 without restraints) Performing minimization step: 2227. Total energy = 3509.7825 kcal/mol (3506.2175 without restraints) Performing minimization step: 2228. Total energy = 3509.6042 kcal/mol (3506.0407 without restraints) Performing minimization step: 2229. Total energy = 3509.4260 kcal/mol (3505.8643 without restraints) Performing minimization step: 2230. Total energy = 3509.2481 kcal/mol (3505.6878 without restraints) Performing minimization step: 2231. Total energy = 3509.0702 kcal/mol (3505.5117 without restraints) Performing minimization step: 2232. Total energy = 3508.8927 kcal/mol (3505.3357 without restraints) Performing minimization step: 2233. Total energy = 3508.7144 kcal/mol (3505.1588 without restraints) Performing minimization step: 2234. Total energy = 3508.5367 kcal/mol (3504.9830 without restraints) Performing minimization step: 2235. Total energy = 3508.3594 kcal/mol (3504.8071 without restraints) Performing minimization step: 2236. Total energy = 3508.1821 kcal/mol (3504.6314 without restraints) Performing minimization step: 2237. Total energy = 3508.0052 kcal/mol (3504.4561 without restraints) Performing minimization step: 2238. Total energy = 3507.8277 kcal/mol (3504.2801 without restraints) Performing minimization step: 2239. Total energy = 3507.6507 kcal/mol (3504.1049 without restraints) Performing minimization step: 2240. Total energy = 3507.4737 kcal/mol (3503.9293 without restraints) Performing minimization step: 2241. Total energy = 3507.2968 kcal/mol (3503.7541 without restraints) Performing minimization step: 2242. Total energy = 3507.1203 kcal/mol (3503.5791 without restraints) Performing minimization step: 2243. Total energy = 3506.9441 kcal/mol (3503.4045 without restraints) Performing minimization step: 2244. Total energy = 3506.7672 kcal/mol (3503.2289 without restraints) Performing minimization step: 2245. Total energy = 3506.5903 kcal/mol (3503.0538 without restraints) Performing minimization step: 2246. Total energy = 3506.4140 kcal/mol (3502.8791 without restraints) Performing minimization step: 2247. Total energy = 3506.2376 kcal/mol (3502.7042 without restraints) Performing minimization step: 2248. Total energy = 3506.0606 kcal/mol (3502.5288 without restraints) Performing minimization step: 2249. Total energy = 3505.8848 kcal/mol (3502.3546 without restraints) Performing minimization step: 2250. Total energy = 3505.7088 kcal/mol (3502.1802 without restraints) Performing minimization step: 2251. Total energy = 3505.5324 kcal/mol (3502.0052 without restraints) Performing minimization step: 2252. Total energy = 3505.3562 kcal/mol (3501.8307 without restraints) Performing minimization step: 2253. Total energy = 3505.1801 kcal/mol (3501.6562 without restraints) Performing minimization step: 2254. Total energy = 3505.0043 kcal/mol (3501.4820 without restraints) Performing minimization step: 2255. Total energy = 3504.8286 kcal/mol (3501.3079 without restraints) Performing minimization step: 2256. Total energy = 3504.6525 kcal/mol (3501.1332 without restraints) Performing minimization step: 2257. Total energy = 3504.4764 kcal/mol (3500.9588 without restraints) Performing minimization step: 2258. Total energy = 3504.3008 kcal/mol (3500.7847 without restraints) Performing minimization step: 2259. Total energy = 3504.1252 kcal/mol (3500.6106 without restraints) Performing minimization step: 2260. Total energy = 3503.9498 kcal/mol (3500.4368 without restraints) Performing minimization step: 2261. Total energy = 3503.7750 kcal/mol (3500.2636 without restraints) Performing minimization step: 2262. Total energy = 3503.5994 kcal/mol (3500.0894 without restraints) Performing minimization step: 2263. Total energy = 3503.4239 kcal/mol (3499.9157 without restraints) Performing minimization step: 2264. Total energy = 3503.2491 kcal/mol (3499.7425 without restraints) Performing minimization step: 2265. Total energy = 3503.0743 kcal/mol (3499.5692 without restraints) Performing minimization step: 2266. Total energy = 3502.8996 kcal/mol (3499.3960 without restraints) Performing minimization step: 2267. Total energy = 3502.7249 kcal/mol (3499.2228 without restraints) Performing minimization step: 2268. Total energy = 3502.5502 kcal/mol (3499.0497 without restraints) Performing minimization step: 2269. Total energy = 3502.3759 kcal/mol (3498.8769 without restraints) Performing minimization step: 2270. Total energy = 3502.2018 kcal/mol (3498.7044 without restraints) Performing minimization step: 2271. Total energy = 3502.0271 kcal/mol (3498.5311 without restraints) Performing minimization step: 2272. Total energy = 3501.8533 kcal/mol (3498.3591 without restraints) Performing minimization step: 2273. Total energy = 3501.6786 kcal/mol (3498.1858 without restraints) Performing minimization step: 2274. Total energy = 3501.5042 kcal/mol (3498.0130 without restraints) Performing minimization step: 2275. Total energy = 3501.3303 kcal/mol (3497.8405 without restraints) Performing minimization step: 2276. Total energy = 3501.1562 kcal/mol (3497.6681 without restraints) Performing minimization step: 2277. Total energy = 3500.9823 kcal/mol (3497.4957 without restraints) Performing minimization step: 2278. Total energy = 3500.8085 kcal/mol (3497.3235 without restraints) Performing minimization step: 2279. Total energy = 3500.6345 kcal/mol (3497.1510 without restraints) Performing minimization step: 2280. Total energy = 3500.4601 kcal/mol (3496.9782 without restraints) Performing minimization step: 2281. Total energy = 3500.2865 kcal/mol (3496.8061 without restraints) Performing minimization step: 2282. Total energy = 3500.1127 kcal/mol (3496.6338 without restraints) Performing minimization step: 2283. Total energy = 3499.9392 kcal/mol (3496.4619 without restraints) Performing minimization step: 2284. Total energy = 3499.7662 kcal/mol (3496.2905 without restraints) Performing minimization step: 2285. Total energy = 3499.5930 kcal/mol (3496.1187 without restraints) Performing minimization step: 2286. Total energy = 3499.4197 kcal/mol (3495.9471 without restraints) Performing minimization step: 2287. Total energy = 3499.2468 kcal/mol (3495.7756 without restraints) Performing minimization step: 2288. Total energy = 3499.0735 kcal/mol (3495.6039 without restraints) Performing minimization step: 2289. Total energy = 3498.9006 kcal/mol (3495.4325 without restraints) Performing minimization step: 2290. Total energy = 3498.7278 kcal/mol (3495.2612 without restraints) Performing minimization step: 2291. Total energy = 3498.5553 kcal/mol (3495.0903 without restraints) Performing minimization step: 2292. Total energy = 3498.3825 kcal/mol (3494.9190 without restraints) Performing minimization step: 2293. Total energy = 3498.2095 kcal/mol (3494.7475 without restraints) Performing minimization step: 2294. Total energy = 3498.0369 kcal/mol (3494.5765 without restraints) Performing minimization step: 2295. Total energy = 3497.8643 kcal/mol (3494.4053 without restraints) Performing minimization step: 2296. Total energy = 3497.6918 kcal/mol (3494.2344 without restraints) Performing minimization step: 2297. Total energy = 3497.5201 kcal/mol (3494.0641 without restraints) Performing minimization step: 2298. Total energy = 3497.3479 kcal/mol (3493.8936 without restraints) Performing minimization step: 2299. Total energy = 3497.1754 kcal/mol (3493.7226 without restraints) Performing minimization step: 2300. Total energy = 3497.0033 kcal/mol (3493.5519 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 3496.8314 kcal/mol (3493.3816 without restraints) Performing minimization step: 2302. Total energy = 3496.6601 kcal/mol (3493.2118 without restraints) Performing minimization step: 2303. Total energy = 3496.4882 kcal/mol (3493.0414 without restraints) Performing minimization step: 2304. Total energy = 3496.3164 kcal/mol (3492.8712 without restraints) Performing minimization step: 2305. Total energy = 3496.1448 kcal/mol (3492.7010 without restraints) Performing minimization step: 2306. Total energy = 3495.9729 kcal/mol (3492.5305 without restraints) Performing minimization step: 2307. Total energy = 3495.8013 kcal/mol (3492.3605 without restraints) Performing minimization step: 2308. Total energy = 3495.6296 kcal/mol (3492.1904 without restraints) Performing minimization step: 2309. Total energy = 3495.4584 kcal/mol (3492.0207 without restraints) Performing minimization step: 2310. Total energy = 3495.2872 kcal/mol (3491.8510 without restraints) Performing minimization step: 2311. Total energy = 3495.1158 kcal/mol (3491.6811 without restraints) Performing minimization step: 2312. Total energy = 3494.9447 kcal/mol (3491.5114 without restraints) Performing minimization step: 2313. Total energy = 3494.7736 kcal/mol (3491.3420 without restraints) Performing minimization step: 2314. Total energy = 3494.6026 kcal/mol (3491.1724 without restraints) Performing minimization step: 2315. Total energy = 3494.4317 kcal/mol (3491.0030 without restraints) Performing minimization step: 2316. Total energy = 3494.2608 kcal/mol (3490.8336 without restraints) Performing minimization step: 2317. Total energy = 3494.0898 kcal/mol (3490.6641 without restraints) Performing minimization step: 2318. Total energy = 3493.9193 kcal/mol (3490.4951 without restraints) Performing minimization step: 2319. Total energy = 3493.7492 kcal/mol (3490.3266 without restraints) Performing minimization step: 2320. Total energy = 3493.5787 kcal/mol (3490.1576 without restraints) Performing minimization step: 2321. Total energy = 3493.4082 kcal/mol (3489.9885 without restraints) Performing minimization step: 2322. Total energy = 3493.2378 kcal/mol (3489.8195 without restraints) Performing minimization step: 2323. Total energy = 3493.0671 kcal/mol (3489.6505 without restraints) Performing minimization step: 2324. Total energy = 3492.8969 kcal/mol (3489.4817 without restraints) Performing minimization step: 2325. Total energy = 3492.7264 kcal/mol (3489.3127 without restraints) Performing minimization step: 2326. Total energy = 3492.5561 kcal/mol (3489.1439 without restraints) Performing minimization step: 2327. Total energy = 3492.3863 kcal/mol (3488.9759 without restraints) Performing minimization step: 2328. Total energy = 3492.2165 kcal/mol (3488.8073 without restraints) Performing minimization step: 2329. Total energy = 3492.0467 kcal/mol (3488.6391 without restraints) Performing minimization step: 2330. Total energy = 3491.8766 kcal/mol (3488.4704 without restraints) Performing minimization step: 2331. Total energy = 3491.7069 kcal/mol (3488.3021 without restraints) Performing minimization step: 2332. Total energy = 3491.5371 kcal/mol (3488.1339 without restraints) Performing minimization step: 2333. Total energy = 3491.3676 kcal/mol (3487.9659 without restraints) Performing minimization step: 2334. Total energy = 3491.1984 kcal/mol (3487.7982 without restraints) Performing minimization step: 2335. Total energy = 3491.0285 kcal/mol (3487.6298 without restraints) Performing minimization step: 2336. Total energy = 3490.8595 kcal/mol (3487.4623 without restraints) Performing minimization step: 2337. Total energy = 3490.6901 kcal/mol (3487.2943 without restraints) Performing minimization step: 2338. Total energy = 3490.5206 kcal/mol (3487.1263 without restraints) Performing minimization step: 2339. Total energy = 3490.3508 kcal/mol (3486.9579 without restraints) Performing minimization step: 2340. Total energy = 3490.1817 kcal/mol (3486.7903 without restraints) Performing minimization step: 2341. Total energy = 3490.0127 kcal/mol (3486.6228 without restraints) Performing minimization step: 2342. Total energy = 3489.8438 kcal/mol (3486.4554 without restraints) Performing minimization step: 2343. Total energy = 3489.6748 kcal/mol (3486.2877 without restraints) Performing minimization step: 2344. Total energy = 3489.5059 kcal/mol (3486.1205 without restraints) Performing minimization step: 2345. Total energy = 3489.3372 kcal/mol (3485.9533 without restraints) Performing minimization step: 2346. Total energy = 3489.1682 kcal/mol (3485.7858 without restraints) Performing minimization step: 2347. Total energy = 3488.9999 kcal/mol (3485.6189 without restraints) Performing minimization step: 2348. Total energy = 3488.8314 kcal/mol (3485.4519 without restraints) Performing minimization step: 2349. Total energy = 3488.6628 kcal/mol (3485.2847 without restraints) Performing minimization step: 2350. Total energy = 3488.4943 kcal/mol (3485.1177 without restraints) Performing minimization step: 2351. Total energy = 3488.3258 kcal/mol (3484.9506 without restraints) Performing minimization step: 2352. Total energy = 3488.1575 kcal/mol (3484.7838 without restraints) Performing minimization step: 2353. Total energy = 3487.9894 kcal/mol (3484.6172 without restraints) Performing minimization step: 2354. Total energy = 3487.8214 kcal/mol (3484.4507 without restraints) Performing minimization step: 2355. Total energy = 3487.6533 kcal/mol (3484.2841 without restraints) Performing minimization step: 2356. Total energy = 3487.4856 kcal/mol (3484.1178 without restraints) Performing minimization step: 2357. Total energy = 3487.3180 kcal/mol (3483.9517 without restraints) Performing minimization step: 2358. Total energy = 3487.1505 kcal/mol (3483.7856 without restraints) Performing minimization step: 2359. Total energy = 3486.9828 kcal/mol (3483.6193 without restraints) Performing minimization step: 2360. Total energy = 3486.8151 kcal/mol (3483.4532 without restraints) Performing minimization step: 2361. Total energy = 3486.6480 kcal/mol (3483.2875 without restraints) Performing minimization step: 2362. Total energy = 3486.4805 kcal/mol (3483.1215 without restraints) Performing minimization step: 2363. Total energy = 3486.3131 kcal/mol (3482.9556 without restraints) Performing minimization step: 2364. Total energy = 3486.1457 kcal/mol (3482.7895 without restraints) Performing minimization step: 2365. Total energy = 3485.9783 kcal/mol (3482.6237 without restraints) Performing minimization step: 2366. Total energy = 3485.8113 kcal/mol (3482.4581 without restraints) Performing minimization step: 2367. Total energy = 3485.6440 kcal/mol (3482.2923 without restraints) Performing minimization step: 2368. Total energy = 3485.4767 kcal/mol (3482.1264 without restraints) Performing minimization step: 2369. Total energy = 3485.3097 kcal/mol (3481.9608 without restraints) Performing minimization step: 2370. Total energy = 3485.1429 kcal/mol (3481.7955 without restraints) Performing minimization step: 2371. Total energy = 3484.9758 kcal/mol (3481.6299 without restraints) Performing minimization step: 2372. Total energy = 3484.8085 kcal/mol (3481.4639 without restraints) Performing minimization step: 2373. Total energy = 3484.6417 kcal/mol (3481.2986 without restraints) Performing minimization step: 2374. Total energy = 3484.4755 kcal/mol (3481.1339 without restraints) Performing minimization step: 2375. Total energy = 3484.3088 kcal/mol (3480.9687 without restraints) Performing minimization step: 2376. Total energy = 3484.1425 kcal/mol (3480.8038 without restraints) Performing minimization step: 2377. Total energy = 3483.9759 kcal/mol (3480.6386 without restraints) Performing minimization step: 2378. Total energy = 3483.8095 kcal/mol (3480.4737 without restraints) Performing minimization step: 2379. Total energy = 3483.6426 kcal/mol (3480.3082 without restraints) Performing minimization step: 2380. Total energy = 3483.4760 kcal/mol (3480.1429 without restraints) Performing minimization step: 2381. Total energy = 3483.3094 kcal/mol (3479.9778 without restraints) Performing minimization step: 2382. Total energy = 3483.1429 kcal/mol (3479.8130 without restraints) Performing minimization step: 2383. Total energy = 3482.9767 kcal/mol (3479.6481 without restraints) Performing minimization step: 2384. Total energy = 3482.8107 kcal/mol (3479.4835 without restraints) Performing minimization step: 2385. Total energy = 3482.6443 kcal/mol (3479.3184 without restraints) Performing minimization step: 2386. Total energy = 3482.4788 kcal/mol (3479.1546 without restraints) Performing minimization step: 2387. Total energy = 3482.3131 kcal/mol (3478.9902 without restraints) Performing minimization step: 2388. Total energy = 3482.1471 kcal/mol (3478.8257 without restraints) Performing minimization step: 2389. Total energy = 3481.9812 kcal/mol (3478.6612 without restraints) Performing minimization step: 2390. Total energy = 3481.8160 kcal/mol (3478.4974 without restraints) Performing minimization step: 2391. Total energy = 3481.6503 kcal/mol (3478.3331 without restraints) Performing minimization step: 2392. Total energy = 3481.4847 kcal/mol (3478.1691 without restraints) Performing minimization step: 2393. Total energy = 3481.3193 kcal/mol (3478.0050 without restraints) Performing minimization step: 2394. Total energy = 3481.1550 kcal/mol (3477.8421 without restraints) Performing minimization step: 2395. Total energy = 3480.9897 kcal/mol (3477.6784 without restraints) Performing minimization step: 2396. Total energy = 3480.8245 kcal/mol (3477.5144 without restraints) Performing minimization step: 2397. Total energy = 3480.6586 kcal/mol (3477.3499 without restraints) Performing minimization step: 2398. Total energy = 3480.4934 kcal/mol (3477.1861 without restraints) Performing minimization step: 2399. Total energy = 3480.3281 kcal/mol (3477.0223 without restraints) Performing minimization step: 2400. Total energy = 3480.1633 kcal/mol (3476.8591 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 3479.9994 kcal/mol (3476.6966 without restraints) Performing minimization step: 2402. Total energy = 3479.8344 kcal/mol (3476.5329 without restraints) Performing minimization step: 2403. Total energy = 3479.6695 kcal/mol (3476.3692 without restraints) Performing minimization step: 2404. Total energy = 3479.5047 kcal/mol (3476.2060 without restraints) Performing minimization step: 2405. Total energy = 3479.3401 kcal/mol (3476.0428 without restraints) Performing minimization step: 2406. Total energy = 3479.1754 kcal/mol (3475.8795 without restraints) Performing minimization step: 2407. Total energy = 3479.0107 kcal/mol (3475.7163 without restraints) Performing minimization step: 2408. Total energy = 3478.8462 kcal/mol (3475.5532 without restraints) Performing minimization step: 2409. Total energy = 3478.6817 kcal/mol (3475.3901 without restraints) Performing minimization step: 2410. Total energy = 3478.5171 kcal/mol (3475.2269 without restraints) Performing minimization step: 2411. Total energy = 3478.3527 kcal/mol (3475.0639 without restraints) Performing minimization step: 2412. Total energy = 3478.1882 kcal/mol (3474.9009 without restraints) Performing minimization step: 2413. Total energy = 3478.0244 kcal/mol (3474.7384 without restraints) Performing minimization step: 2414. Total energy = 3477.8604 kcal/mol (3474.5758 without restraints) Performing minimization step: 2415. Total energy = 3477.6965 kcal/mol (3474.4133 without restraints) Performing minimization step: 2416. Total energy = 3477.5326 kcal/mol (3474.2509 without restraints) Performing minimization step: 2417. Total energy = 3477.3691 kcal/mol (3474.0887 without restraints) Performing minimization step: 2418. Total energy = 3477.2051 kcal/mol (3473.9262 without restraints) Performing minimization step: 2419. Total energy = 3477.0415 kcal/mol (3473.7639 without restraints) Performing minimization step: 2420. Total energy = 3476.8779 kcal/mol (3473.6018 without restraints) Performing minimization step: 2421. Total energy = 3476.7144 kcal/mol (3473.4396 without restraints) Performing minimization step: 2422. Total energy = 3476.5509 kcal/mol (3473.2775 without restraints) Performing minimization step: 2423. Total energy = 3476.3879 kcal/mol (3473.1159 without restraints) Performing minimization step: 2424. Total energy = 3476.2245 kcal/mol (3472.9539 without restraints) Performing minimization step: 2425. Total energy = 3476.0614 kcal/mol (3472.7923 without restraints) Performing minimization step: 2426. Total energy = 3475.8985 kcal/mol (3472.6307 without restraints) Performing minimization step: 2427. Total energy = 3475.7352 kcal/mol (3472.4688 without restraints) Performing minimization step: 2428. Total energy = 3475.5723 kcal/mol (3472.3073 without restraints) Performing minimization step: 2429. Total energy = 3475.4093 kcal/mol (3472.1457 without restraints) Performing minimization step: 2430. Total energy = 3475.2463 kcal/mol (3471.9841 without restraints) Performing minimization step: 2431. Total energy = 3475.0835 kcal/mol (3471.8228 without restraints) Performing minimization step: 2432. Total energy = 3474.9208 kcal/mol (3471.6613 without restraints) Performing minimization step: 2433. Total energy = 3474.7578 kcal/mol (3471.4998 without restraints) Performing minimization step: 2434. Total energy = 3474.5951 kcal/mol (3471.3384 without restraints) Performing minimization step: 2435. Total energy = 3474.4325 kcal/mol (3471.1772 without restraints) Performing minimization step: 2436. Total energy = 3474.2702 kcal/mol (3471.0163 without restraints) Performing minimization step: 2437. Total energy = 3474.1076 kcal/mol (3470.8551 without restraints) Performing minimization step: 2438. Total energy = 3473.9454 kcal/mol (3470.6943 without restraints) Performing minimization step: 2439. Total energy = 3473.7830 kcal/mol (3470.5333 without restraints) Performing minimization step: 2440. Total energy = 3473.6205 kcal/mol (3470.3723 without restraints) Performing minimization step: 2441. Total energy = 3473.4584 kcal/mol (3470.2114 without restraints) Performing minimization step: 2442. Total energy = 3473.2962 kcal/mol (3470.0506 without restraints) Performing minimization step: 2443. Total energy = 3473.1338 kcal/mol (3469.8895 without restraints) Performing minimization step: 2444. Total energy = 3472.9713 kcal/mol (3469.7284 without restraints) Performing minimization step: 2445. Total energy = 3472.8096 kcal/mol (3469.5681 without restraints) Performing minimization step: 2446. Total energy = 3472.6471 kcal/mol (3469.4070 without restraints) Performing minimization step: 2447. Total energy = 3472.4850 kcal/mol (3469.2462 without restraints) Performing minimization step: 2448. Total energy = 3472.3229 kcal/mol (3469.0856 without restraints) Performing minimization step: 2449. Total energy = 3472.1611 kcal/mol (3468.9252 without restraints) Performing minimization step: 2450. Total energy = 3471.9994 kcal/mol (3468.7648 without restraints) Performing minimization step: 2451. Total energy = 3471.8379 kcal/mol (3468.6047 without restraints) Performing minimization step: 2452. Total energy = 3471.6765 kcal/mol (3468.4447 without restraints) Performing minimization step: 2453. Total energy = 3471.5152 kcal/mol (3468.2849 without restraints) Performing minimization step: 2454. Total energy = 3471.3542 kcal/mol (3468.1250 without restraints) Performing minimization step: 2455. Total energy = 3471.1928 kcal/mol (3467.9648 without restraints) Performing minimization step: 2456. Total energy = 3471.0313 kcal/mol (3467.8048 without restraints) Performing minimization step: 2457. Total energy = 3470.8695 kcal/mol (3467.6445 without restraints) Performing minimization step: 2458. Total energy = 3470.7083 kcal/mol (3467.4846 without restraints) Performing minimization step: 2459. Total energy = 3470.5472 kcal/mol (3467.3250 without restraints) Performing minimization step: 2460. Total energy = 3470.3860 kcal/mol (3467.1648 without restraints) Performing minimization step: 2461. Total energy = 3470.2245 kcal/mol (3467.0049 without restraints) Performing minimization step: 2462. Total energy = 3470.0634 kcal/mol (3466.8451 without restraints) Performing minimization step: 2463. Total energy = 3469.9024 kcal/mol (3466.6855 without restraints) Performing minimization step: 2464. Total energy = 3469.7417 kcal/mol (3466.5261 without restraints) Performing minimization step: 2465. Total energy = 3469.5805 kcal/mol (3466.3662 without restraints) Performing minimization step: 2466. Total energy = 3469.4195 kcal/mol (3466.2067 without restraints) Performing minimization step: 2467. Total energy = 3469.2590 kcal/mol (3466.0475 without restraints) Performing minimization step: 2468. Total energy = 3469.0983 kcal/mol (3465.8881 without restraints) Performing minimization step: 2469. Total energy = 3468.9376 kcal/mol (3465.7288 without restraints) Performing minimization step: 2470. Total energy = 3468.7773 kcal/mol (3465.5698 without restraints) Performing minimization step: 2471. Total energy = 3468.6164 kcal/mol (3465.4104 without restraints) Performing minimization step: 2472. Total energy = 3468.4556 kcal/mol (3465.2508 without restraints) Performing minimization step: 2473. Total energy = 3468.2954 kcal/mol (3465.0920 without restraints) Performing minimization step: 2474. Total energy = 3468.1350 kcal/mol (3464.9329 without restraints) Performing minimization step: 2475. Total energy = 3467.9748 kcal/mol (3464.7740 without restraints) Performing minimization step: 2476. Total energy = 3467.8148 kcal/mol (3464.6155 without restraints) Performing minimization step: 2477. Total energy = 3467.6549 kcal/mol (3464.4569 without restraints) Performing minimization step: 2478. Total energy = 3467.4946 kcal/mol (3464.2979 without restraints) Performing minimization step: 2479. Total energy = 3467.3346 kcal/mol (3464.1393 without restraints) Performing minimization step: 2480. Total energy = 3467.1748 kcal/mol (3463.9809 without restraints) Performing minimization step: 2481. Total energy = 3467.0148 kcal/mol (3463.8221 without restraints) Performing minimization step: 2482. Total energy = 3466.8546 kcal/mol (3463.6632 without restraints) Performing minimization step: 2483. Total energy = 3466.6950 kcal/mol (3463.5050 without restraints) Performing minimization step: 2484. Total energy = 3466.5353 kcal/mol (3463.3466 without restraints) Performing minimization step: 2485. Total energy = 3466.3754 kcal/mol (3463.1881 without restraints) Performing minimization step: 2486. Total energy = 3466.2154 kcal/mol (3463.0294 without restraints) Performing minimization step: 2487. Total energy = 3466.0559 kcal/mol (3462.8713 without restraints) Performing minimization step: 2488. Total energy = 3465.8961 kcal/mol (3462.7128 without restraints) Performing minimization step: 2489. Total energy = 3465.7368 kcal/mol (3462.5550 without restraints) Performing minimization step: 2490. Total energy = 3465.5774 kcal/mol (3462.3967 without restraints) Performing minimization step: 2491. Total energy = 3465.4181 kcal/mol (3462.2388 without restraints) Performing minimization step: 2492. Total energy = 3465.2591 kcal/mol (3462.0813 without restraints) Performing minimization step: 2493. Total energy = 3465.0999 kcal/mol (3461.9233 without restraints) Performing minimization step: 2494. Total energy = 3464.9404 kcal/mol (3461.7651 without restraints) Performing minimization step: 2495. Total energy = 3464.7811 kcal/mol (3461.6069 without restraints) Performing minimization step: 2496. Total energy = 3464.6221 kcal/mol (3461.4494 without restraints) Performing minimization step: 2497. Total energy = 3464.4631 kcal/mol (3461.2917 without restraints) Performing minimization step: 2498. Total energy = 3464.3041 kcal/mol (3461.1341 without restraints) Performing minimization step: 2499. Total energy = 3464.1454 kcal/mol (3460.9767 without restraints) Performing minimization step: 2500. Total energy = 3463.9866 kcal/mol (3460.8192 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 3463.8279 kcal/mol (3460.6618 without restraints) Performing minimization step: 2502. Total energy = 3463.6688 kcal/mol (3460.5041 without restraints) Performing minimization step: 2503. Total energy = 3463.5103 kcal/mol (3460.3468 without restraints) Performing minimization step: 2504. Total energy = 3463.3514 kcal/mol (3460.1892 without restraints) Performing minimization step: 2505. Total energy = 3463.1930 kcal/mol (3460.0322 without restraints) Performing minimization step: 2506. Total energy = 3463.0347 kcal/mol (3459.8752 without restraints) Performing minimization step: 2507. Total energy = 3462.8762 kcal/mol (3459.7180 without restraints) Performing minimization step: 2508. Total energy = 3462.7178 kcal/mol (3459.5608 without restraints) Performing minimization step: 2509. Total energy = 3462.5599 kcal/mol (3459.4044 without restraints) Performing minimization step: 2510. Total energy = 3462.4017 kcal/mol (3459.2474 without restraints) Performing minimization step: 2511. Total energy = 3462.2430 kcal/mol (3459.0901 without restraints) Performing minimization step: 2512. Total energy = 3462.0847 kcal/mol (3458.9330 without restraints) Performing minimization step: 2513. Total energy = 3461.9266 kcal/mol (3458.7763 without restraints) Performing minimization step: 2514. Total energy = 3461.7688 kcal/mol (3458.6197 without restraints) Performing minimization step: 2515. Total energy = 3461.6110 kcal/mol (3458.4633 without restraints) Performing minimization step: 2516. Total energy = 3461.4535 kcal/mol (3458.3072 without restraints) Performing minimization step: 2517. Total energy = 3461.2959 kcal/mol (3458.1508 without restraints) Performing minimization step: 2518. Total energy = 3461.1381 kcal/mol (3457.9943 without restraints) Performing minimization step: 2519. Total energy = 3460.9803 kcal/mol (3457.8377 without restraints) Performing minimization step: 2520. Total energy = 3460.8226 kcal/mol (3457.6814 without restraints) Performing minimization step: 2521. Total energy = 3460.6653 kcal/mol (3457.5254 without restraints) Performing minimization step: 2522. Total energy = 3460.5076 kcal/mol (3457.3690 without restraints) Performing minimization step: 2523. Total energy = 3460.3504 kcal/mol (3457.2131 without restraints) Performing minimization step: 2524. Total energy = 3460.1925 kcal/mol (3457.0565 without restraints) Performing minimization step: 2525. Total energy = 3460.0352 kcal/mol (3456.9004 without restraints) Performing minimization step: 2526. Total energy = 3459.8779 kcal/mol (3456.7444 without restraints) Performing minimization step: 2527. Total energy = 3459.7206 kcal/mol (3456.5885 without restraints) Performing minimization step: 2528. Total energy = 3459.5634 kcal/mol (3456.4326 without restraints) Performing minimization step: 2529. Total energy = 3459.4064 kcal/mol (3456.2768 without restraints) Performing minimization step: 2530. Total energy = 3459.2494 kcal/mol (3456.1211 without restraints) Performing minimization step: 2531. Total energy = 3459.0924 kcal/mol (3455.9655 without restraints) Performing minimization step: 2532. Total energy = 3458.9355 kcal/mol (3455.8098 without restraints) Performing minimization step: 2533. Total energy = 3458.7779 kcal/mol (3455.6535 without restraints) Performing minimization step: 2534. Total energy = 3458.6210 kcal/mol (3455.4979 without restraints) Performing minimization step: 2535. Total energy = 3458.4648 kcal/mol (3455.3429 without restraints) Performing minimization step: 2536. Total energy = 3458.3081 kcal/mol (3455.1876 without restraints) Performing minimization step: 2537. Total energy = 3458.1512 kcal/mol (3455.0320 without restraints) Performing minimization step: 2538. Total energy = 3457.9945 kcal/mol (3454.8765 without restraints) Performing minimization step: 2539. Total energy = 3457.8372 kcal/mol (3454.7206 without restraints) Performing minimization step: 2540. Total energy = 3457.6808 kcal/mol (3454.5654 without restraints) Performing minimization step: 2541. Total energy = 3457.5241 kcal/mol (3454.4100 without restraints) Performing minimization step: 2542. Total energy = 3457.3677 kcal/mol (3454.2549 without restraints) Performing minimization step: 2543. Total energy = 3457.2113 kcal/mol (3454.0998 without restraints) Performing minimization step: 2544. Total energy = 3457.0550 kcal/mol (3453.9447 without restraints) Performing minimization step: 2545. Total energy = 3456.8983 kcal/mol (3453.7893 without restraints) Performing minimization step: 2546. Total energy = 3456.7419 kcal/mol (3453.6342 without restraints) Performing minimization step: 2547. Total energy = 3456.5860 kcal/mol (3453.4795 without restraints) Performing minimization step: 2548. Total energy = 3456.4298 kcal/mol (3453.3246 without restraints) Performing minimization step: 2549. Total energy = 3456.2736 kcal/mol (3453.1697 without restraints) Performing minimization step: 2550. Total energy = 3456.1176 kcal/mol (3453.0150 without restraints) Performing minimization step: 2551. Total energy = 3455.9616 kcal/mol (3452.8602 without restraints) Performing minimization step: 2552. Total energy = 3455.8057 kcal/mol (3452.7056 without restraints) Performing minimization step: 2553. Total energy = 3455.6497 kcal/mol (3452.5508 without restraints) Performing minimization step: 2554. Total energy = 3455.4936 kcal/mol (3452.3960 without restraints) Performing minimization step: 2555. Total energy = 3455.3376 kcal/mol (3452.2412 without restraints) Performing minimization step: 2556. Total energy = 3455.1822 kcal/mol (3452.0871 without restraints) Performing minimization step: 2557. Total energy = 3455.0265 kcal/mol (3451.9327 without restraints) Performing minimization step: 2558. Total energy = 3454.8711 kcal/mol (3451.7785 without restraints) Performing minimization step: 2559. Total energy = 3454.7152 kcal/mol (3451.6238 without restraints) Performing minimization step: 2560. Total energy = 3454.5596 kcal/mol (3451.4696 without restraints) Performing minimization step: 2561. Total energy = 3454.4037 kcal/mol (3451.3151 without restraints) Performing minimization step: 2562. Total energy = 3454.2484 kcal/mol (3451.1609 without restraints) Performing minimization step: 2563. Total energy = 3454.0930 kcal/mol (3451.0068 without restraints) Performing minimization step: 2564. Total energy = 3453.9374 kcal/mol (3450.8524 without restraints) Performing minimization step: 2565. Total energy = 3453.7819 kcal/mol (3450.6982 without restraints) Performing minimization step: 2566. Total energy = 3453.6266 kcal/mol (3450.5441 without restraints) Performing minimization step: 2567. Total energy = 3453.4717 kcal/mol (3450.3905 without restraints) Performing minimization step: 2568. Total energy = 3453.3168 kcal/mol (3450.2369 without restraints) Performing minimization step: 2569. Total energy = 3453.1619 kcal/mol (3450.0833 without restraints) Performing minimization step: 2570. Total energy = 3453.0072 kcal/mol (3449.9297 without restraints) Performing minimization step: 2571. Total energy = 3452.8522 kcal/mol (3449.7761 without restraints) Performing minimization step: 2572. Total energy = 3452.6974 kcal/mol (3449.6224 without restraints) Performing minimization step: 2573. Total energy = 3452.5424 kcal/mol (3449.4687 without restraints) Performing minimization step: 2574. Total energy = 3452.3878 kcal/mol (3449.3154 without restraints) Performing minimization step: 2575. Total energy = 3452.2331 kcal/mol (3449.1619 without restraints) Performing minimization step: 2576. Total energy = 3452.0785 kcal/mol (3449.0085 without restraints) Performing minimization step: 2577. Total energy = 3451.9238 kcal/mol (3448.8551 without restraints) Performing minimization step: 2578. Total energy = 3451.7693 kcal/mol (3448.7019 without restraints) Performing minimization step: 2579. Total energy = 3451.6151 kcal/mol (3448.5489 without restraints) Performing minimization step: 2580. Total energy = 3451.4606 kcal/mol (3448.3956 without restraints) Performing minimization step: 2581. Total energy = 3451.3060 kcal/mol (3448.2422 without restraints) Performing minimization step: 2582. Total energy = 3451.1514 kcal/mol (3448.0889 without restraints) Performing minimization step: 2583. Total energy = 3450.9971 kcal/mol (3447.9358 without restraints) Performing minimization step: 2584. Total energy = 3450.8429 kcal/mol (3447.7829 without restraints) Performing minimization step: 2585. Total energy = 3450.6886 kcal/mol (3447.6298 without restraints) Performing minimization step: 2586. Total energy = 3450.5345 kcal/mol (3447.4769 without restraints) Performing minimization step: 2587. Total energy = 3450.3803 kcal/mol (3447.3241 without restraints) Performing minimization step: 2588. Total energy = 3450.2263 kcal/mol (3447.1711 without restraints) Performing minimization step: 2589. Total energy = 3450.0720 kcal/mol (3447.0182 without restraints) Performing minimization step: 2590. Total energy = 3449.9179 kcal/mol (3446.8653 without restraints) Performing minimization step: 2591. Total energy = 3449.7636 kcal/mol (3446.7123 without restraints) Performing minimization step: 2592. Total energy = 3449.6099 kcal/mol (3446.5597 without restraints) Performing minimization step: 2593. Total energy = 3449.4560 kcal/mol (3446.4071 without restraints) Performing minimization step: 2594. Total energy = 3449.3023 kcal/mol (3446.2546 without restraints) Performing minimization step: 2595. Total energy = 3449.1487 kcal/mol (3446.1022 without restraints) Performing minimization step: 2596. Total energy = 3448.9952 kcal/mol (3445.9500 without restraints) Performing minimization step: 2597. Total energy = 3448.8416 kcal/mol (3445.7975 without restraints) Performing minimization step: 2598. Total energy = 3448.6875 kcal/mol (3445.6447 without restraints) Performing minimization step: 2599. Total energy = 3448.5338 kcal/mol (3445.4923 without restraints) Performing minimization step: 2600. Total energy = 3448.3806 kcal/mol (3445.3402 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 3448.2270 kcal/mol (3445.1879 without restraints) Performing minimization step: 2602. Total energy = 3448.0732 kcal/mol (3445.0353 without restraints) Performing minimization step: 2603. Total energy = 3447.9194 kcal/mol (3444.8826 without restraints) Performing minimization step: 2604. Total energy = 3447.7661 kcal/mol (3444.7306 without restraints) Performing minimization step: 2605. Total energy = 3447.6131 kcal/mol (3444.5789 without restraints) Performing minimization step: 2606. Total energy = 3447.4604 kcal/mol (3444.4273 without restraints) Performing minimization step: 2607. Total energy = 3447.3073 kcal/mol (3444.2755 without restraints) Performing minimization step: 2608. Total energy = 3447.1541 kcal/mol (3444.1236 without restraints) Performing minimization step: 2609. Total energy = 3447.0011 kcal/mol (3443.9719 without restraints) Performing minimization step: 2610. Total energy = 3446.8483 kcal/mol (3443.8202 without restraints) Performing minimization step: 2611. Total energy = 3446.6956 kcal/mol (3443.6687 without restraints) Performing minimization step: 2612. Total energy = 3446.5434 kcal/mol (3443.5177 without restraints) Performing minimization step: 2613. Total energy = 3446.3907 kcal/mol (3443.3665 without restraints) Performing minimization step: 2614. Total energy = 3446.2380 kcal/mol (3443.2148 without restraints) Performing minimization step: 2615. Total energy = 3446.0852 kcal/mol (3443.0631 without restraints) Performing minimization step: 2616. Total energy = 3445.9326 kcal/mol (3442.9117 without restraints) Performing minimization step: 2617. Total energy = 3445.7796 kcal/mol (3442.7600 without restraints) Performing minimization step: 2618. Total energy = 3445.6267 kcal/mol (3442.6082 without restraints) Performing minimization step: 2619. Total energy = 3445.4741 kcal/mol (3442.4568 without restraints) Performing minimization step: 2620. Total energy = 3445.3214 kcal/mol (3442.3053 without restraints) Performing minimization step: 2621. Total energy = 3445.1690 kcal/mol (3442.1542 without restraints) Performing minimization step: 2622. Total energy = 3445.0162 kcal/mol (3442.0026 without restraints) Performing minimization step: 2623. Total energy = 3444.8638 kcal/mol (3441.8514 without restraints) Performing minimization step: 2624. Total energy = 3444.7114 kcal/mol (3441.7002 without restraints) Performing minimization step: 2625. Total energy = 3444.5592 kcal/mol (3441.5492 without restraints) Performing minimization step: 2626. Total energy = 3444.4071 kcal/mol (3441.3983 without restraints) Performing minimization step: 2627. Total energy = 3444.2550 kcal/mol (3441.2474 without restraints) Performing minimization step: 2628. Total energy = 3444.1031 kcal/mol (3441.0967 without restraints) Performing minimization step: 2629. Total energy = 3443.9516 kcal/mol (3440.9463 without restraints) Performing minimization step: 2630. Total energy = 3443.7992 kcal/mol (3440.7952 without restraints) Performing minimization step: 2631. Total energy = 3443.6474 kcal/mol (3440.6445 without restraints) Performing minimization step: 2632. Total energy = 3443.4955 kcal/mol (3440.4940 without restraints) Performing minimization step: 2633. Total energy = 3443.3438 kcal/mol (3440.3433 without restraints) Performing minimization step: 2634. Total energy = 3443.1916 kcal/mol (3440.1921 without restraints) Performing minimization step: 2635. Total energy = 3443.0399 kcal/mol (3440.0419 without restraints) Performing minimization step: 2636. Total energy = 3442.8883 kcal/mol (3439.8915 without restraints) Performing minimization step: 2637. Total energy = 3442.7368 kcal/mol (3439.7412 without restraints) Performing minimization step: 2638. Total energy = 3442.5858 kcal/mol (3439.5913 without restraints) Performing minimization step: 2639. Total energy = 3442.4345 kcal/mol (3439.4412 without restraints) Performing minimization step: 2640. Total energy = 3442.2834 kcal/mol (3439.2914 without restraints) Performing minimization step: 2641. Total energy = 3442.1321 kcal/mol (3439.1412 without restraints) Performing minimization step: 2642. Total energy = 3441.9806 kcal/mol (3438.9907 without restraints) Performing minimization step: 2643. Total energy = 3441.8293 kcal/mol (3438.8406 without restraints) Performing minimization step: 2644. Total energy = 3441.6781 kcal/mol (3438.6907 without restraints) Performing minimization step: 2645. Total energy = 3441.5274 kcal/mol (3438.5412 without restraints) Performing minimization step: 2646. Total energy = 3441.3764 kcal/mol (3438.3914 without restraints) Performing minimization step: 2647. Total energy = 3441.2252 kcal/mol (3438.2414 without restraints) Performing minimization step: 2648. Total energy = 3441.0740 kcal/mol (3438.0914 without restraints) Performing minimization step: 2649. Total energy = 3440.9231 kcal/mol (3437.9416 without restraints) Performing minimization step: 2650. Total energy = 3440.7722 kcal/mol (3437.7919 without restraints) Performing minimization step: 2651. Total energy = 3440.6214 kcal/mol (3437.6423 without restraints) Performing minimization step: 2652. Total energy = 3440.4707 kcal/mol (3437.4927 without restraints) Performing minimization step: 2653. Total energy = 3440.3199 kcal/mol (3437.3432 without restraints) Performing minimization step: 2654. Total energy = 3440.1693 kcal/mol (3437.1937 without restraints) Performing minimization step: 2655. Total energy = 3440.0184 kcal/mol (3437.0440 without restraints) Performing minimization step: 2656. Total energy = 3439.8678 kcal/mol (3436.8945 without restraints) Performing minimization step: 2657. Total energy = 3439.7170 kcal/mol (3436.7450 without restraints) Performing minimization step: 2658. Total energy = 3439.5668 kcal/mol (3436.5959 without restraints) Performing minimization step: 2659. Total energy = 3439.4164 kcal/mol (3436.4467 without restraints) Performing minimization step: 2660. Total energy = 3439.2657 kcal/mol (3436.2971 without restraints) Performing minimization step: 2661. Total energy = 3439.1154 kcal/mol (3436.1480 without restraints) Performing minimization step: 2662. Total energy = 3438.9647 kcal/mol (3435.9985 without restraints) Performing minimization step: 2663. Total energy = 3438.8145 kcal/mol (3435.8495 without restraints) Performing minimization step: 2664. Total energy = 3438.6646 kcal/mol (3435.7006 without restraints) Performing minimization step: 2665. Total energy = 3438.5146 kcal/mol (3435.5519 without restraints) Performing minimization step: 2666. Total energy = 3438.3646 kcal/mol (3435.4030 without restraints) Performing minimization step: 2667. Total energy = 3438.2143 kcal/mol (3435.2539 without restraints) Performing minimization step: 2668. Total energy = 3438.0644 kcal/mol (3435.1051 without restraints) Performing minimization step: 2669. Total energy = 3437.9142 kcal/mol (3434.9561 without restraints) Performing minimization step: 2670. Total energy = 3437.7643 kcal/mol (3434.8074 without restraints) Performing minimization step: 2671. Total energy = 3437.6148 kcal/mol (3434.6591 without restraints) Performing minimization step: 2672. Total energy = 3437.4651 kcal/mol (3434.5105 without restraints) Performing minimization step: 2673. Total energy = 3437.3153 kcal/mol (3434.3617 without restraints) Performing minimization step: 2674. Total energy = 3437.1653 kcal/mol (3434.2130 without restraints) Performing minimization step: 2675. Total energy = 3437.0154 kcal/mol (3434.0642 without restraints) Performing minimization step: 2676. Total energy = 3436.8659 kcal/mol (3433.9159 without restraints) Performing minimization step: 2677. Total energy = 3436.7166 kcal/mol (3433.7676 without restraints) Performing minimization step: 2678. Total energy = 3436.5668 kcal/mol (3433.6192 without restraints) Performing minimization step: 2679. Total energy = 3436.4176 kcal/mol (3433.4711 without restraints) Performing minimization step: 2680. Total energy = 3436.2682 kcal/mol (3433.3228 without restraints) Performing minimization step: 2681. Total energy = 3436.1191 kcal/mol (3433.1748 without restraints) Performing minimization step: 2682. Total energy = 3435.9695 kcal/mol (3433.0264 without restraints) Performing minimization step: 2683. Total energy = 3435.8201 kcal/mol (3432.8782 without restraints) Performing minimization step: 2684. Total energy = 3435.6709 kcal/mol (3432.7301 without restraints) Performing minimization step: 2685. Total energy = 3435.5217 kcal/mol (3432.5821 without restraints) Performing minimization step: 2686. Total energy = 3435.3731 kcal/mol (3432.4347 without restraints) Performing minimization step: 2687. Total energy = 3435.2241 kcal/mol (3432.2868 without restraints) Performing minimization step: 2688. Total energy = 3435.0751 kcal/mol (3432.1390 without restraints) Performing minimization step: 2689. Total energy = 3434.9264 kcal/mol (3431.9913 without restraints) Performing minimization step: 2690. Total energy = 3434.7778 kcal/mol (3431.8439 without restraints) Performing minimization step: 2691. Total energy = 3434.6291 kcal/mol (3431.6964 without restraints) Performing minimization step: 2692. Total energy = 3434.4805 kcal/mol (3431.5487 without restraints) Performing minimization step: 2693. Total energy = 3434.3314 kcal/mol (3431.4009 without restraints) Performing minimization step: 2694. Total energy = 3434.1827 kcal/mol (3431.2533 without restraints) Performing minimization step: 2695. Total energy = 3434.0340 kcal/mol (3431.1058 without restraints) Performing minimization step: 2696. Total energy = 3433.8857 kcal/mol (3430.9586 without restraints) Performing minimization step: 2697. Total energy = 3433.7371 kcal/mol (3430.8112 without restraints) Performing minimization step: 2698. Total energy = 3433.5889 kcal/mol (3430.6641 without restraints) Performing minimization step: 2699. Total energy = 3433.4404 kcal/mol (3430.5168 without restraints) Performing minimization step: 2700. Total energy = 3433.2923 kcal/mol (3430.3698 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 3433.1441 kcal/mol (3430.2228 without restraints) Performing minimization step: 2702. Total energy = 3432.9961 kcal/mol (3430.0758 without restraints) Performing minimization step: 2703. Total energy = 3432.8478 kcal/mol (3429.9287 without restraints) Performing minimization step: 2704. Total energy = 3432.6997 kcal/mol (3429.7819 without restraints) Performing minimization step: 2705. Total energy = 3432.5518 kcal/mol (3429.6349 without restraints) Performing minimization step: 2706. Total energy = 3432.4039 kcal/mol (3429.4882 without restraints) Performing minimization step: 2707. Total energy = 3432.2559 kcal/mol (3429.3414 without restraints) Performing minimization step: 2708. Total energy = 3432.1078 kcal/mol (3429.1943 without restraints) Performing minimization step: 2709. Total energy = 3431.9598 kcal/mol (3429.0474 without restraints) Performing minimization step: 2710. Total energy = 3431.8116 kcal/mol (3428.9002 without restraints) Performing minimization step: 2711. Total energy = 3431.6635 kcal/mol (3428.7534 without restraints) Performing minimization step: 2712. Total energy = 3431.5157 kcal/mol (3428.6066 without restraints) Performing minimization step: 2713. Total energy = 3431.3679 kcal/mol (3428.4601 without restraints) Performing minimization step: 2714. Total energy = 3431.2203 kcal/mol (3428.3136 without restraints) Performing minimization step: 2715. Total energy = 3431.0727 kcal/mol (3428.1672 without restraints) Performing minimization step: 2716. Total energy = 3430.9254 kcal/mol (3428.0210 without restraints) Performing minimization step: 2717. Total energy = 3430.7778 kcal/mol (3427.8744 without restraints) Performing minimization step: 2718. Total energy = 3430.6301 kcal/mol (3427.7279 without restraints) Performing minimization step: 2719. Total energy = 3430.4829 kcal/mol (3427.5818 without restraints) Performing minimization step: 2720. Total energy = 3430.3355 kcal/mol (3427.4354 without restraints) Performing minimization step: 2721. Total energy = 3430.1883 kcal/mol (3427.2895 without restraints) Performing minimization step: 2722. Total energy = 3430.0408 kcal/mol (3427.1431 without restraints) Performing minimization step: 2723. Total energy = 3429.8935 kcal/mol (3426.9969 without restraints) Performing minimization step: 2724. Total energy = 3429.7467 kcal/mol (3426.8512 without restraints) Performing minimization step: 2725. Total energy = 3429.5997 kcal/mol (3426.7054 without restraints) Performing minimization step: 2726. Total energy = 3429.4530 kcal/mol (3426.5597 without restraints) Performing minimization step: 2727. Total energy = 3429.3062 kcal/mol (3426.4141 without restraints) Performing minimization step: 2728. Total energy = 3429.1598 kcal/mol (3426.2687 without restraints) Performing minimization step: 2729. Total energy = 3429.0127 kcal/mol (3426.1227 without restraints) Performing minimization step: 2730. Total energy = 3428.8658 kcal/mol (3425.9770 without restraints) Performing minimization step: 2731. Total energy = 3428.7191 kcal/mol (3425.8313 without restraints) Performing minimization step: 2732. Total energy = 3428.5723 kcal/mol (3425.6858 without restraints) Performing minimization step: 2733. Total energy = 3428.4254 kcal/mol (3425.5400 without restraints) Performing minimization step: 2734. Total energy = 3428.2790 kcal/mol (3425.3945 without restraints) Performing minimization step: 2735. Total energy = 3428.1324 kcal/mol (3425.2491 without restraints) Performing minimization step: 2736. Total energy = 3427.9854 kcal/mol (3425.1031 without restraints) Performing minimization step: 2737. Total energy = 3427.8387 kcal/mol (3424.9576 without restraints) Performing minimization step: 2738. Total energy = 3427.6923 kcal/mol (3424.8123 without restraints) Performing minimization step: 2739. Total energy = 3427.5462 kcal/mol (3424.6673 without restraints) Performing minimization step: 2740. Total energy = 3427.3999 kcal/mol (3424.5220 without restraints) Performing minimization step: 2741. Total energy = 3427.2534 kcal/mol (3424.3767 without restraints) Performing minimization step: 2742. Total energy = 3427.1072 kcal/mol (3424.2316 without restraints) Performing minimization step: 2743. Total energy = 3426.9610 kcal/mol (3424.0864 without restraints) Performing minimization step: 2744. Total energy = 3426.8148 kcal/mol (3423.9415 without restraints) Performing minimization step: 2745. Total energy = 3426.6688 kcal/mol (3423.7964 without restraints) Performing minimization step: 2746. Total energy = 3426.5229 kcal/mol (3423.6517 without restraints) Performing minimization step: 2747. Total energy = 3426.3770 kcal/mol (3423.5069 without restraints) Performing minimization step: 2748. Total energy = 3426.2311 kcal/mol (3423.3621 without restraints) Performing minimization step: 2749. Total energy = 3426.0854 kcal/mol (3423.2174 without restraints) Performing minimization step: 2750. Total energy = 3425.9394 kcal/mol (3423.0727 without restraints) Performing minimization step: 2751. Total energy = 3425.7939 kcal/mol (3422.9281 without restraints) Performing minimization step: 2752. Total energy = 3425.6481 kcal/mol (3422.7834 without restraints) Performing minimization step: 2753. Total energy = 3425.5024 kcal/mol (3422.6389 without restraints) Performing minimization step: 2754. Total energy = 3425.3567 kcal/mol (3422.4942 without restraints) Performing minimization step: 2755. Total energy = 3425.2110 kcal/mol (3422.3495 without restraints) Performing minimization step: 2756. Total energy = 3425.0651 kcal/mol (3422.2050 without restraints) Performing minimization step: 2757. Total energy = 3424.9198 kcal/mol (3422.0605 without restraints) Performing minimization step: 2758. Total energy = 3424.7746 kcal/mol (3421.9166 without restraints) Performing minimization step: 2759. Total energy = 3424.6292 kcal/mol (3421.7721 without restraints) Performing minimization step: 2760. Total energy = 3424.4842 kcal/mol (3421.6283 without restraints) Performing minimization step: 2761. Total energy = 3424.3391 kcal/mol (3421.4842 without restraints) Performing minimization step: 2762. Total energy = 3424.1935 kcal/mol (3421.3398 without restraints) Performing minimization step: 2763. Total energy = 3424.0484 kcal/mol (3421.1958 without restraints) Performing minimization step: 2764. Total energy = 3423.9034 kcal/mol (3421.0518 without restraints) Performing minimization step: 2765. Total energy = 3423.7580 kcal/mol (3420.9076 without restraints) Performing minimization step: 2766. Total energy = 3423.6137 kcal/mol (3420.7642 without restraints) Performing minimization step: 2767. Total energy = 3423.4688 kcal/mol (3420.6205 without restraints) Performing minimization step: 2768. Total energy = 3423.3244 kcal/mol (3420.4772 without restraints) Performing minimization step: 2769. Total energy = 3423.1800 kcal/mol (3420.3338 without restraints) Performing minimization step: 2770. Total energy = 3423.0351 kcal/mol (3420.1900 without restraints) Performing minimization step: 2771. Total energy = 3422.8906 kcal/mol (3420.0466 without restraints) Performing minimization step: 2772. Total energy = 3422.7456 kcal/mol (3419.9027 without restraints) Performing minimization step: 2773. Total energy = 3422.6011 kcal/mol (3419.7592 without restraints) Performing minimization step: 2774. Total energy = 3422.4564 kcal/mol (3419.6156 without restraints) Performing minimization step: 2775. Total energy = 3422.3126 kcal/mol (3419.4728 without restraints) Performing minimization step: 2776. Total energy = 3422.1681 kcal/mol (3419.3292 without restraints) Performing minimization step: 2777. Total energy = 3422.0236 kcal/mol (3419.1860 without restraints) Performing minimization step: 2778. Total energy = 3421.8789 kcal/mol (3419.0424 without restraints) Performing minimization step: 2779. Total energy = 3421.7345 kcal/mol (3418.8989 without restraints) Performing minimization step: 2780. Total energy = 3421.5904 kcal/mol (3418.7560 without restraints) Performing minimization step: 2781. Total energy = 3421.4461 kcal/mol (3418.6128 without restraints) Performing minimization step: 2782. Total energy = 3421.3020 kcal/mol (3418.4698 without restraints) Performing minimization step: 2783. Total energy = 3421.1582 kcal/mol (3418.3270 without restraints) Performing minimization step: 2784. Total energy = 3421.0139 kcal/mol (3418.1838 without restraints) Performing minimization step: 2785. Total energy = 3420.8701 kcal/mol (3418.0410 without restraints) Performing minimization step: 2786. Total energy = 3420.7264 kcal/mol (3417.8984 without restraints) Performing minimization step: 2787. Total energy = 3420.5821 kcal/mol (3417.7551 without restraints) Performing minimization step: 2788. Total energy = 3420.4384 kcal/mol (3417.6126 without restraints) Performing minimization step: 2789. Total energy = 3420.2948 kcal/mol (3417.4702 without restraints) Performing minimization step: 2790. Total energy = 3420.1511 kcal/mol (3417.3274 without restraints) Performing minimization step: 2791. Total energy = 3420.0075 kcal/mol (3417.1849 without restraints) Performing minimization step: 2792. Total energy = 3419.8643 kcal/mol (3417.0427 without restraints) Performing minimization step: 2793. Total energy = 3419.7208 kcal/mol (3416.9003 without restraints) Performing minimization step: 2794. Total energy = 3419.5774 kcal/mol (3416.7579 without restraints) Performing minimization step: 2795. Total energy = 3419.4337 kcal/mol (3416.6153 without restraints) Performing minimization step: 2796. Total energy = 3419.2902 kcal/mol (3416.4728 without restraints) Performing minimization step: 2797. Total energy = 3419.1468 kcal/mol (3416.3305 without restraints) Performing minimization step: 2798. Total energy = 3419.0032 kcal/mol (3416.1879 without restraints) Performing minimization step: 2799. Total energy = 3418.8600 kcal/mol (3416.0458 without restraints) Performing minimization step: 2800. Total energy = 3418.7164 kcal/mol (3415.9033 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 3418.5738 kcal/mol (3415.7617 without restraints) Performing minimization step: 2802. Total energy = 3418.4307 kcal/mol (3415.6196 without restraints) Performing minimization step: 2803. Total energy = 3418.2876 kcal/mol (3415.4777 without restraints) Performing minimization step: 2804. Total energy = 3418.1447 kcal/mol (3415.3358 without restraints) Performing minimization step: 2805. Total energy = 3418.0019 kcal/mol (3415.1940 without restraints) Performing minimization step: 2806. Total energy = 3417.8594 kcal/mol (3415.0527 without restraints) Performing minimization step: 2807. Total energy = 3417.7166 kcal/mol (3414.9109 without restraints) Performing minimization step: 2808. Total energy = 3417.5739 kcal/mol (3414.7692 without restraints) Performing minimization step: 2809. Total energy = 3417.4312 kcal/mol (3414.6277 without restraints) Performing minimization step: 2810. Total energy = 3417.2886 kcal/mol (3414.4860 without restraints) Performing minimization step: 2811. Total energy = 3417.1455 kcal/mol (3414.3440 without restraints) Performing minimization step: 2812. Total energy = 3417.0029 kcal/mol (3414.2024 without restraints) Performing minimization step: 2813. Total energy = 3416.8603 kcal/mol (3414.0607 without restraints) Performing minimization step: 2814. Total energy = 3416.7176 kcal/mol (3413.9192 without restraints) Performing minimization step: 2815. Total energy = 3416.5753 kcal/mol (3413.7779 without restraints) Performing minimization step: 2816. Total energy = 3416.4326 kcal/mol (3413.6363 without restraints) Performing minimization step: 2817. Total energy = 3416.2904 kcal/mol (3413.4951 without restraints) Performing minimization step: 2818. Total energy = 3416.1483 kcal/mol (3413.3540 without restraints) Performing minimization step: 2819. Total energy = 3416.0060 kcal/mol (3413.2128 without restraints) Performing minimization step: 2820. Total energy = 3415.8640 kcal/mol (3413.0718 without restraints) Performing minimization step: 2821. Total energy = 3415.7221 kcal/mol (3412.9308 without restraints) Performing minimization step: 2822. Total energy = 3415.5802 kcal/mol (3412.7901 without restraints) Performing minimization step: 2823. Total energy = 3415.4385 kcal/mol (3412.6494 without restraints) Performing minimization step: 2824. Total energy = 3415.2967 kcal/mol (3412.5088 without restraints) Performing minimization step: 2825. Total energy = 3415.1551 kcal/mol (3412.3682 without restraints) Performing minimization step: 2826. Total energy = 3415.0134 kcal/mol (3412.2273 without restraints) Performing minimization step: 2827. Total energy = 3414.8719 kcal/mol (3412.0873 without restraints) Performing minimization step: 2828. Total energy = 3414.7301 kcal/mol (3411.9462 without restraints) Performing minimization step: 2829. Total energy = 3414.5888 kcal/mol (3411.8059 without restraints) Performing minimization step: 2830. Total energy = 3414.4472 kcal/mol (3411.6652 without restraints) Performing minimization step: 2831. Total energy = 3414.3057 kcal/mol (3411.5249 without restraints) Performing minimization step: 2832. Total energy = 3414.1641 kcal/mol (3411.3843 without restraints) Performing minimization step: 2833. Total energy = 3414.0227 kcal/mol (3411.2438 without restraints) Performing minimization step: 2834. Total energy = 3413.8818 kcal/mol (3411.1042 without restraints) Performing minimization step: 2835. Total energy = 3413.7404 kcal/mol (3410.9638 without restraints) Performing minimization step: 2836. Total energy = 3413.5993 kcal/mol (3410.8237 without restraints) Performing minimization step: 2837. Total energy = 3413.4581 kcal/mol (3410.6836 without restraints) Performing minimization step: 2838. Total energy = 3413.3173 kcal/mol (3410.5437 without restraints) Performing minimization step: 2839. Total energy = 3413.1763 kcal/mol (3410.4038 without restraints) Performing minimization step: 2840. Total energy = 3413.0354 kcal/mol (3410.2638 without restraints) Performing minimization step: 2841. Total energy = 3412.8944 kcal/mol (3410.1239 without restraints) Performing minimization step: 2842. Total energy = 3412.7535 kcal/mol (3409.9841 without restraints) Performing minimization step: 2843. Total energy = 3412.6127 kcal/mol (3409.8443 without restraints) Performing minimization step: 2844. Total energy = 3412.4718 kcal/mol (3409.7045 without restraints) Performing minimization step: 2845. Total energy = 3412.3310 kcal/mol (3409.5646 without restraints) Performing minimization step: 2846. Total energy = 3412.1903 kcal/mol (3409.4249 without restraints) Performing minimization step: 2847. Total energy = 3412.0495 kcal/mol (3409.2851 without restraints) Performing minimization step: 2848. Total energy = 3411.9090 kcal/mol (3409.1456 without restraints) Performing minimization step: 2849. Total energy = 3411.7685 kcal/mol (3409.0061 without restraints) Performing minimization step: 2850. Total energy = 3411.6272 kcal/mol (3408.8658 without restraints) Performing minimization step: 2851. Total energy = 3411.4868 kcal/mol (3408.7265 without restraints) Performing minimization step: 2852. Total energy = 3411.3469 kcal/mol (3408.5875 without restraints) Performing minimization step: 2853. Total energy = 3411.2065 kcal/mol (3408.4483 without restraints) Performing minimization step: 2854. Total energy = 3411.0664 kcal/mol (3408.3091 without restraints) Performing minimization step: 2855. Total energy = 3410.9256 kcal/mol (3408.1693 without restraints) Performing minimization step: 2856. Total energy = 3410.7854 kcal/mol (3408.0302 without restraints) Performing minimization step: 2857. Total energy = 3410.6454 kcal/mol (3407.8912 without restraints) Performing minimization step: 2858. Total energy = 3410.5054 kcal/mol (3407.7522 without restraints) Performing minimization step: 2859. Total energy = 3410.3654 kcal/mol (3407.6132 without restraints) Performing minimization step: 2860. Total energy = 3410.2251 kcal/mol (3407.4739 without restraints) Performing minimization step: 2861. Total energy = 3410.0853 kcal/mol (3407.3351 without restraints) Performing minimization step: 2862. Total energy = 3409.9451 kcal/mol (3407.1960 without restraints) Performing minimization step: 2863. Total energy = 3409.8056 kcal/mol (3407.0574 without restraints) Performing minimization step: 2864. Total energy = 3409.6659 kcal/mol (3406.9188 without restraints) Performing minimization step: 2865. Total energy = 3409.5260 kcal/mol (3406.7799 without restraints) Performing minimization step: 2866. Total energy = 3409.3865 kcal/mol (3406.6413 without restraints) Performing minimization step: 2867. Total energy = 3409.2470 kcal/mol (3406.5030 without restraints) Performing minimization step: 2868. Total energy = 3409.1076 kcal/mol (3406.3645 without restraints) Performing minimization step: 2869. Total energy = 3408.9682 kcal/mol (3406.2261 without restraints) Performing minimization step: 2870. Total energy = 3408.8288 kcal/mol (3406.0877 without restraints) Performing minimization step: 2871. Total energy = 3408.6892 kcal/mol (3405.9491 without restraints) Performing minimization step: 2872. Total energy = 3408.5494 kcal/mol (3405.8103 without restraints) Performing minimization step: 2873. Total energy = 3408.4100 kcal/mol (3405.6719 without restraints) Performing minimization step: 2874. Total energy = 3408.2709 kcal/mol (3405.5338 without restraints) Performing minimization step: 2875. Total energy = 3408.1321 kcal/mol (3405.3960 without restraints) Performing minimization step: 2876. Total energy = 3407.9930 kcal/mol (3405.2579 without restraints) Performing minimization step: 2877. Total energy = 3407.8540 kcal/mol (3405.1199 without restraints) Performing minimization step: 2878. Total energy = 3407.7153 kcal/mol (3404.9822 without restraints) Performing minimization step: 2879. Total energy = 3407.5761 kcal/mol (3404.8440 without restraints) Performing minimization step: 2880. Total energy = 3407.4373 kcal/mol (3404.7062 without restraints) Performing minimization step: 2881. Total energy = 3407.2987 kcal/mol (3404.5686 without restraints) Performing minimization step: 2882. Total energy = 3407.1600 kcal/mol (3404.4309 without restraints) Performing minimization step: 2883. Total energy = 3407.0216 kcal/mol (3404.2934 without restraints) Performing minimization step: 2884. Total energy = 3406.8825 kcal/mol (3404.1554 without restraints) Performing minimization step: 2885. Total energy = 3406.7439 kcal/mol (3404.0178 without restraints) Performing minimization step: 2886. Total energy = 3406.6056 kcal/mol (3403.8804 without restraints) Performing minimization step: 2887. Total energy = 3406.4668 kcal/mol (3403.7425 without restraints) Performing minimization step: 2888. Total energy = 3406.3283 kcal/mol (3403.6052 without restraints) Performing minimization step: 2889. Total energy = 3406.1899 kcal/mol (3403.4676 without restraints) Performing minimization step: 2890. Total energy = 3406.0514 kcal/mol (3403.3302 without restraints) Performing minimization step: 2891. Total energy = 3405.9131 kcal/mol (3403.1928 without restraints) Performing minimization step: 2892. Total energy = 3405.7746 kcal/mol (3403.0554 without restraints) Performing minimization step: 2893. Total energy = 3405.6366 kcal/mol (3402.9184 without restraints) Performing minimization step: 2894. Total energy = 3405.4983 kcal/mol (3402.7811 without restraints) Performing minimization step: 2895. Total energy = 3405.3603 kcal/mol (3402.6441 without restraints) Performing minimization step: 2896. Total energy = 3405.2222 kcal/mol (3402.5069 without restraints) Performing minimization step: 2897. Total energy = 3405.0845 kcal/mol (3402.3702 without restraints) Performing minimization step: 2898. Total energy = 3404.9460 kcal/mol (3402.2324 without restraints) Performing minimization step: 2899. Total energy = 3404.8081 kcal/mol (3402.0958 without restraints) Performing minimization step: 2900. Total energy = 3404.6707 kcal/mol (3401.9593 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 3404.5320 kcal/mol (3401.8217 without restraints) Performing minimization step: 2902. Total energy = 3404.3944 kcal/mol (3401.6849 without restraints) Performing minimization step: 2903. Total energy = 3404.2566 kcal/mol (3401.5483 without restraints) Performing minimization step: 2904. Total energy = 3404.1189 kcal/mol (3401.4115 without restraints) Performing minimization step: 2905. Total energy = 3403.9820 kcal/mol (3401.2756 without restraints) Performing minimization step: 2906. Total energy = 3403.8446 kcal/mol (3401.1392 without restraints) Performing minimization step: 2907. Total energy = 3403.7074 kcal/mol (3401.0030 without restraints) Performing minimization step: 2908. Total energy = 3403.5698 kcal/mol (3400.8662 without restraints) Performing minimization step: 2909. Total energy = 3403.4322 kcal/mol (3400.7296 without restraints) Performing minimization step: 2910. Total energy = 3403.2951 kcal/mol (3400.5935 without restraints) Performing minimization step: 2911. Total energy = 3403.1576 kcal/mol (3400.4571 without restraints) Performing minimization step: 2912. Total energy = 3403.0205 kcal/mol (3400.3209 without restraints) Performing minimization step: 2913. Total energy = 3402.8829 kcal/mol (3400.1843 without restraints) Performing minimization step: 2914. Total energy = 3402.7461 kcal/mol (3400.0485 without restraints) Performing minimization step: 2915. Total energy = 3402.6090 kcal/mol (3399.9122 without restraints) Performing minimization step: 2916. Total energy = 3402.4717 kcal/mol (3399.7760 without restraints) Performing minimization step: 2917. Total energy = 3402.3352 kcal/mol (3399.6405 without restraints) Performing minimization step: 2918. Total energy = 3402.1981 kcal/mol (3399.5042 without restraints) Performing minimization step: 2919. Total energy = 3402.0613 kcal/mol (3399.3685 without restraints) Performing minimization step: 2920. Total energy = 3401.9243 kcal/mol (3399.2324 without restraints) Performing minimization step: 2921. Total energy = 3401.7880 kcal/mol (3399.0970 without restraints) Performing minimization step: 2922. Total energy = 3401.6509 kcal/mol (3398.9610 without restraints) Performing minimization step: 2923. Total energy = 3401.5139 kcal/mol (3398.8248 without restraints) Performing minimization step: 2924. Total energy = 3401.3773 kcal/mol (3398.6893 without restraints) Performing minimization step: 2925. Total energy = 3401.2408 kcal/mol (3398.5538 without restraints) Performing minimization step: 2926. Total energy = 3401.1044 kcal/mol (3398.4183 without restraints) Performing minimization step: 2927. Total energy = 3400.9680 kcal/mol (3398.2829 without restraints) Performing minimization step: 2928. Total energy = 3400.8316 kcal/mol (3398.1475 without restraints) Performing minimization step: 2929. Total energy = 3400.6954 kcal/mol (3398.0123 without restraints) Performing minimization step: 2930. Total energy = 3400.5590 kcal/mol (3397.8768 without restraints) Performing minimization step: 2931. Total energy = 3400.4227 kcal/mol (3397.7415 without restraints) Performing minimization step: 2932. Total energy = 3400.2866 kcal/mol (3397.6063 without restraints) Performing minimization step: 2933. Total energy = 3400.1505 kcal/mol (3397.4712 without restraints) Performing minimization step: 2934. Total energy = 3400.0138 kcal/mol (3397.3354 without restraints) Performing minimization step: 2935. Total energy = 3399.8780 kcal/mol (3397.2005 without restraints) Performing minimization step: 2936. Total energy = 3399.7420 kcal/mol (3397.0657 without restraints) Performing minimization step: 2937. Total energy = 3399.6059 kcal/mol (3396.9303 without restraints) Performing minimization step: 2938. Total energy = 3399.4699 kcal/mol (3396.7955 without restraints) Performing minimization step: 2939. Total energy = 3399.3343 kcal/mol (3396.6607 without restraints) Performing minimization step: 2940. Total energy = 3399.1986 kcal/mol (3396.5260 without restraints) Performing minimization step: 2941. Total energy = 3399.0626 kcal/mol (3396.3909 without restraints) Performing minimization step: 2942. Total energy = 3398.9270 kcal/mol (3396.2563 without restraints) Performing minimization step: 2943. Total energy = 3398.7910 kcal/mol (3396.1213 without restraints) Performing minimization step: 2944. Total energy = 3398.6554 kcal/mol (3395.9866 without restraints) Performing minimization step: 2945. Total energy = 3398.5201 kcal/mol (3395.8523 without restraints) Performing minimization step: 2946. Total energy = 3398.3840 kcal/mol (3395.7168 without restraints) Performing minimization step: 2947. Total energy = 3398.2487 kcal/mol (3395.5827 without restraints) Performing minimization step: 2948. Total energy = 3398.1134 kcal/mol (3395.4484 without restraints) Performing minimization step: 2949. Total energy = 3397.9779 kcal/mol (3395.3139 without restraints) Performing minimization step: 2950. Total energy = 3397.8421 kcal/mol (3395.1791 without restraints) Performing minimization step: 2951. Total energy = 3397.7071 kcal/mol (3395.0449 without restraints) Performing minimization step: 2952. Total energy = 3397.5721 kcal/mol (3394.9109 without restraints) Performing minimization step: 2953. Total energy = 3397.4373 kcal/mol (3394.7772 without restraints) Performing minimization step: 2954. Total energy = 3397.3023 kcal/mol (3394.6430 without restraints) Performing minimization step: 2955. Total energy = 3397.1674 kcal/mol (3394.5091 without restraints) Performing minimization step: 2956. Total energy = 3397.0326 kcal/mol (3394.3752 without restraints) Performing minimization step: 2957. Total energy = 3396.8978 kcal/mol (3394.2413 without restraints) Performing minimization step: 2958. Total energy = 3396.7630 kcal/mol (3394.1073 without restraints) Performing minimization step: 2959. Total energy = 3396.6282 kcal/mol (3393.9736 without restraints) Performing minimization step: 2960. Total energy = 3396.4934 kcal/mol (3393.8397 without restraints) Performing minimization step: 2961. Total energy = 3396.3586 kcal/mol (3393.7059 without restraints) Performing minimization step: 2962. Total energy = 3396.2238 kcal/mol (3393.5721 without restraints) Performing minimization step: 2963. Total energy = 3396.0895 kcal/mol (3393.4388 without restraints) Performing minimization step: 2964. Total energy = 3395.9551 kcal/mol (3393.3052 without restraints) Performing minimization step: 2965. Total energy = 3395.8208 kcal/mol (3393.1718 without restraints) Performing minimization step: 2966. Total energy = 3395.6863 kcal/mol (3393.0383 without restraints) Performing minimization step: 2967. Total energy = 3395.5520 kcal/mol (3392.9049 without restraints) Performing minimization step: 2968. Total energy = 3395.4180 kcal/mol (3392.7718 without restraints) Performing minimization step: 2969. Total energy = 3395.2835 kcal/mol (3392.6383 without restraints) Performing minimization step: 2970. Total energy = 3395.1496 kcal/mol (3392.5053 without restraints) Performing minimization step: 2971. Total energy = 3395.0153 kcal/mol (3392.3719 without restraints) Performing minimization step: 2972. Total energy = 3394.8808 kcal/mol (3392.2384 without restraints) Performing minimization step: 2973. Total energy = 3394.7467 kcal/mol (3392.1052 without restraints) Performing minimization step: 2974. Total energy = 3394.6126 kcal/mol (3391.9720 without restraints) Performing minimization step: 2975. Total energy = 3394.4789 kcal/mol (3391.8393 without restraints) Performing minimization step: 2976. Total energy = 3394.3451 kcal/mol (3391.7064 without restraints) Performing minimization step: 2977. Total energy = 3394.2114 kcal/mol (3391.5736 without restraints) Performing minimization step: 2978. Total energy = 3394.0777 kcal/mol (3391.4409 without restraints) Performing minimization step: 2979. Total energy = 3393.9441 kcal/mol (3391.3082 without restraints) Performing minimization step: 2980. Total energy = 3393.8106 kcal/mol (3391.1757 without restraints) Performing minimization step: 2981. Total energy = 3393.6773 kcal/mol (3391.0432 without restraints) Performing minimization step: 2982. Total energy = 3393.5440 kcal/mol (3390.9108 without restraints) Performing minimization step: 2983. Total energy = 3393.4105 kcal/mol (3390.7782 without restraints) Performing minimization step: 2984. Total energy = 3393.2771 kcal/mol (3390.6458 without restraints) Performing minimization step: 2985. Total energy = 3393.1435 kcal/mol (3390.5131 without restraints) Performing minimization step: 2986. Total energy = 3393.0102 kcal/mol (3390.3808 without restraints) Performing minimization step: 2987. Total energy = 3392.8766 kcal/mol (3390.2481 without restraints) Performing minimization step: 2988. Total energy = 3392.7433 kcal/mol (3390.1158 without restraints) Performing minimization step: 2989. Total energy = 3392.6100 kcal/mol (3389.9832 without restraints) Performing minimization step: 2990. Total energy = 3392.4768 kcal/mol (3389.8511 without restraints) Performing minimization step: 2991. Total energy = 3392.3438 kcal/mol (3389.7190 without restraints) Performing minimization step: 2992. Total energy = 3392.2110 kcal/mol (3389.5871 without restraints) Performing minimization step: 2993. Total energy = 3392.0786 kcal/mol (3389.4557 without restraints) Performing minimization step: 2994. Total energy = 3391.9458 kcal/mol (3389.3239 without restraints) Performing minimization step: 2995. Total energy = 3391.8129 kcal/mol (3389.1917 without restraints) Performing minimization step: 2996. Total energy = 3391.6800 kcal/mol (3389.0596 without restraints) Performing minimization step: 2997. Total energy = 3391.5471 kcal/mol (3388.9277 without restraints) Performing minimization step: 2998. Total energy = 3391.4143 kcal/mol (3388.7959 without restraints) Performing minimization step: 2999. Total energy = 3391.2817 kcal/mol (3388.6643 without restraints) Performing minimization step: 3000. Total energy = 3391.1492 kcal/mol (3388.5326 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 3391.0165 kcal/mol (3388.4008 without restraints) Performing minimization step: 3002. Total energy = 3390.8836 kcal/mol (3388.2689 without restraints) Performing minimization step: 3003. Total energy = 3390.7513 kcal/mol (3388.1375 without restraints) Performing minimization step: 3004. Total energy = 3390.6186 kcal/mol (3388.0057 without restraints) Performing minimization step: 3005. Total energy = 3390.4862 kcal/mol (3387.8741 without restraints) Performing minimization step: 3006. Total energy = 3390.3539 kcal/mol (3387.7428 without restraints) Performing minimization step: 3007. Total energy = 3390.2214 kcal/mol (3387.6112 without restraints) Performing minimization step: 3008. Total energy = 3390.0892 kcal/mol (3387.4799 without restraints) Performing minimization step: 3009. Total energy = 3389.9570 kcal/mol (3387.3487 without restraints) Performing minimization step: 3010. Total energy = 3389.8249 kcal/mol (3387.2174 without restraints) Performing minimization step: 3011. Total energy = 3389.6925 kcal/mol (3387.0859 without restraints) Performing minimization step: 3012. Total energy = 3389.5603 kcal/mol (3386.9545 without restraints) Performing minimization step: 3013. Total energy = 3389.4286 kcal/mol (3386.8239 without restraints) Performing minimization step: 3014. Total energy = 3389.2970 kcal/mol (3386.6932 without restraints) Performing minimization step: 3015. Total energy = 3389.1654 kcal/mol (3386.5626 without restraints) Performing minimization step: 3016. Total energy = 3389.0339 kcal/mol (3386.4320 without restraints) Performing minimization step: 3017. Total energy = 3388.9024 kcal/mol (3386.3013 without restraints) Performing minimization step: 3018. Total energy = 3388.7709 kcal/mol (3386.1709 without restraints) Performing minimization step: 3019. Total energy = 3388.6391 kcal/mol (3386.0398 without restraints) Performing minimization step: 3020. Total energy = 3388.5076 kcal/mol (3385.9092 without restraints) Performing minimization step: 3021. Total energy = 3388.3756 kcal/mol (3385.7781 without restraints) Performing minimization step: 3022. Total energy = 3388.2441 kcal/mol (3385.6473 without restraints) Performing minimization step: 3023. Total energy = 3388.1123 kcal/mol (3385.5166 without restraints) Performing minimization step: 3024. Total energy = 3387.9810 kcal/mol (3385.3862 without restraints) Performing minimization step: 3025. Total energy = 3387.8496 kcal/mol (3385.2556 without restraints) Performing minimization step: 3026. Total energy = 3387.7181 kcal/mol (3385.1249 without restraints) Performing minimization step: 3027. Total energy = 3387.5866 kcal/mol (3384.9945 without restraints) Performing minimization step: 3028. Total energy = 3387.4551 kcal/mol (3384.8638 without restraints) Performing minimization step: 3029. Total energy = 3387.3238 kcal/mol (3384.7334 without restraints) Performing minimization step: 3030. Total energy = 3387.1925 kcal/mol (3384.6030 without restraints) Performing minimization step: 3031. Total energy = 3387.0614 kcal/mol (3384.4728 without restraints) Performing minimization step: 3032. Total energy = 3386.9303 kcal/mol (3384.3426 without restraints) Performing minimization step: 3033. Total energy = 3386.7988 kcal/mol (3384.2120 without restraints) Performing minimization step: 3034. Total energy = 3386.6680 kcal/mol (3384.0823 without restraints) Performing minimization step: 3035. Total energy = 3386.5378 kcal/mol (3383.9527 without restraints) Performing minimization step: 3036. Total energy = 3386.4069 kcal/mol (3383.8227 without restraints) Performing minimization step: 3037. Total energy = 3386.2762 kcal/mol (3383.6931 without restraints) Performing minimization step: 3038. Total energy = 3386.1459 kcal/mol (3383.5635 without restraints) Performing minimization step: 3039. Total energy = 3386.0151 kcal/mol (3383.4337 without restraints) Performing minimization step: 3040. Total energy = 3385.8843 kcal/mol (3383.3037 without restraints) Performing minimization step: 3041. Total energy = 3385.7537 kcal/mol (3383.1740 without restraints) Performing minimization step: 3042. Total energy = 3385.6231 kcal/mol (3383.0442 without restraints) Performing minimization step: 3043. Total energy = 3385.4924 kcal/mol (3382.9145 without restraints) Performing minimization step: 3044. Total energy = 3385.3619 kcal/mol (3382.7848 without restraints) Performing minimization step: 3045. Total energy = 3385.2313 kcal/mol (3382.6552 without restraints) Performing minimization step: 3046. Total energy = 3385.1008 kcal/mol (3382.5256 without restraints) Performing minimization step: 3047. Total energy = 3384.9706 kcal/mol (3382.3963 without restraints) Performing minimization step: 3048. Total energy = 3384.8401 kcal/mol (3382.2665 without restraints) Performing minimization step: 3049. Total energy = 3384.7097 kcal/mol (3382.1371 without restraints) Performing minimization step: 3050. Total energy = 3384.5798 kcal/mol (3382.0081 without restraints) Performing minimization step: 3051. Total energy = 3384.4498 kcal/mol (3381.8789 without restraints) Performing minimization step: 3052. Total energy = 3384.3195 kcal/mol (3381.7495 without restraints) Performing minimization step: 3053. Total energy = 3384.1893 kcal/mol (3381.6202 without restraints) Performing minimization step: 3054. Total energy = 3384.0593 kcal/mol (3381.4912 without restraints) Performing minimization step: 3055. Total energy = 3383.9293 kcal/mol (3381.3619 without restraints) Performing minimization step: 3056. Total energy = 3383.7992 kcal/mol (3381.2326 without restraints) Performing minimization step: 3057. Total energy = 3383.6691 kcal/mol (3381.1035 without restraints) Performing minimization step: 3058. Total energy = 3383.5392 kcal/mol (3380.9744 without restraints) Performing minimization step: 3059. Total energy = 3383.4093 kcal/mol (3380.8454 without restraints) Performing minimization step: 3060. Total energy = 3383.2803 kcal/mol (3380.7175 without restraints) Performing minimization step: 3061. Total energy = 3383.1504 kcal/mol (3380.5883 without restraints) Performing minimization step: 3062. Total energy = 3383.0208 kcal/mol (3380.4596 without restraints) Performing minimization step: 3063. Total energy = 3382.8912 kcal/mol (3380.3308 without restraints) Performing minimization step: 3064. Total energy = 3382.7613 kcal/mol (3380.2018 without restraints) Performing minimization step: 3065. Total energy = 3382.6319 kcal/mol (3380.0732 without restraints) Performing minimization step: 3066. Total energy = 3382.5026 kcal/mol (3379.9448 without restraints) Performing minimization step: 3067. Total energy = 3382.3729 kcal/mol (3379.8159 without restraints) Performing minimization step: 3068. Total energy = 3382.2435 kcal/mol (3379.6875 without restraints) Performing minimization step: 3069. Total energy = 3382.1142 kcal/mol (3379.5590 without restraints) Performing minimization step: 3070. Total energy = 3381.9848 kcal/mol (3379.4305 without restraints) Performing minimization step: 3071. Total energy = 3381.8558 kcal/mol (3379.3023 without restraints) Performing minimization step: 3072. Total energy = 3381.7264 kcal/mol (3379.1738 without restraints) Performing minimization step: 3073. Total energy = 3381.5974 kcal/mol (3379.0456 without restraints) Performing minimization step: 3074. Total energy = 3381.4683 kcal/mol (3378.9175 without restraints) Performing minimization step: 3075. Total energy = 3381.3399 kcal/mol (3378.7899 without restraints) Performing minimization step: 3076. Total energy = 3381.2108 kcal/mol (3378.6617 without restraints) Performing minimization step: 3077. Total energy = 3381.0819 kcal/mol (3378.5337 without restraints) Performing minimization step: 3078. Total energy = 3380.9528 kcal/mol (3378.4054 without restraints) Performing minimization step: 3079. Total energy = 3380.8238 kcal/mol (3378.2772 without restraints) Performing minimization step: 3080. Total energy = 3380.6948 kcal/mol (3378.1491 without restraints) Performing minimization step: 3081. Total energy = 3380.5655 kcal/mol (3378.0207 without restraints) Performing minimization step: 3082. Total energy = 3380.4362 kcal/mol (3377.8922 without restraints) Performing minimization step: 3083. Total energy = 3380.3074 kcal/mol (3377.7642 without restraints) Performing minimization step: 3084. Total energy = 3380.1790 kcal/mol (3377.6368 without restraints) Performing minimization step: 3085. Total energy = 3380.0495 kcal/mol (3377.5080 without restraints) Performing minimization step: 3086. Total energy = 3379.9209 kcal/mol (3377.3803 without restraints) Performing minimization step: 3087. Total energy = 3379.7916 kcal/mol (3377.2519 without restraints) Performing minimization step: 3088. Total energy = 3379.6630 kcal/mol (3377.1242 without restraints) Performing minimization step: 3089. Total energy = 3379.5344 kcal/mol (3376.9964 without restraints) Performing minimization step: 3090. Total energy = 3379.4055 kcal/mol (3376.8684 without restraints) Performing minimization step: 3091. Total energy = 3379.2771 kcal/mol (3376.7408 without restraints) Performing minimization step: 3092. Total energy = 3379.1483 kcal/mol (3376.6129 without restraints) Performing minimization step: 3093. Total energy = 3379.0197 kcal/mol (3376.4852 without restraints) Performing minimization step: 3094. Total energy = 3378.8914 kcal/mol (3376.3576 without restraints) Performing minimization step: 3095. Total energy = 3378.7628 kcal/mol (3376.2299 without restraints) Performing minimization step: 3096. Total energy = 3378.6345 kcal/mol (3376.1025 without restraints) Performing minimization step: 3097. Total energy = 3378.5064 kcal/mol (3375.9752 without restraints) Performing minimization step: 3098. Total energy = 3378.3782 kcal/mol (3375.8479 without restraints) Performing minimization step: 3099. Total energy = 3378.2503 kcal/mol (3375.7208 without restraints) Performing minimization step: 3100. Total energy = 3378.1222 kcal/mol (3375.5936 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 3377.9937 kcal/mol (3375.4659 without restraints) Performing minimization step: 3102. Total energy = 3377.8657 kcal/mol (3375.3387 without restraints) Performing minimization step: 3103. Total energy = 3377.7379 kcal/mol (3375.2118 without restraints) Performing minimization step: 3104. Total energy = 3377.6098 kcal/mol (3375.0844 without restraints) Performing minimization step: 3105. Total energy = 3377.4818 kcal/mol (3374.9574 without restraints) Performing minimization step: 3106. Total energy = 3377.3539 kcal/mol (3374.8303 without restraints) Performing minimization step: 3107. Total energy = 3377.2257 kcal/mol (3374.7029 without restraints) Performing minimization step: 3108. Total energy = 3377.0976 kcal/mol (3374.5757 without restraints) Performing minimization step: 3109. Total energy = 3376.9699 kcal/mol (3374.4487 without restraints) Performing minimization step: 3110. Total energy = 3376.8420 kcal/mol (3374.3217 without restraints) Performing minimization step: 3111. Total energy = 3376.7145 kcal/mol (3374.1951 without restraints) Performing minimization step: 3112. Total energy = 3376.5869 kcal/mol (3374.0682 without restraints) Performing minimization step: 3113. Total energy = 3376.4587 kcal/mol (3373.9409 without restraints) Performing minimization step: 3114. Total energy = 3376.3310 kcal/mol (3373.8142 without restraints) Performing minimization step: 3115. Total energy = 3376.2032 kcal/mol (3373.6872 without restraints) Performing minimization step: 3116. Total energy = 3376.0755 kcal/mol (3373.5603 without restraints) Performing minimization step: 3117. Total energy = 3375.9481 kcal/mol (3373.4338 without restraints) Performing minimization step: 3118. Total energy = 3375.8208 kcal/mol (3373.3073 without restraints) Performing minimization step: 3119. Total energy = 3375.6936 kcal/mol (3373.1809 without restraints) Performing minimization step: 3120. Total energy = 3375.5661 kcal/mol (3373.0543 without restraints) Performing minimization step: 3121. Total energy = 3375.4388 kcal/mol (3372.9278 without restraints) Performing minimization step: 3122. Total energy = 3375.3114 kcal/mol (3372.8012 without restraints) Performing minimization step: 3123. Total energy = 3375.1843 kcal/mol (3372.6749 without restraints) Performing minimization step: 3124. Total energy = 3375.0572 kcal/mol (3372.5488 without restraints) Performing minimization step: 3125. Total energy = 3374.9301 kcal/mol (3372.4224 without restraints) Performing minimization step: 3126. Total energy = 3374.8031 kcal/mol (3372.2962 without restraints) Performing minimization step: 3127. Total energy = 3374.6761 kcal/mol (3372.1700 without restraints) Performing minimization step: 3128. Total energy = 3374.5493 kcal/mol (3372.0441 without restraints) Performing minimization step: 3129. Total energy = 3374.4223 kcal/mol (3371.9179 without restraints) Performing minimization step: 3130. Total energy = 3374.2953 kcal/mol (3371.7917 without restraints) Performing minimization step: 3131. Total energy = 3374.1682 kcal/mol (3371.6654 without restraints) Performing minimization step: 3132. Total energy = 3374.0414 kcal/mol (3371.5395 without restraints) Performing minimization step: 3133. Total energy = 3373.9146 kcal/mol (3371.4135 without restraints) Performing minimization step: 3134. Total energy = 3373.7879 kcal/mol (3371.2876 without restraints) Performing minimization step: 3135. Total energy = 3373.6613 kcal/mol (3371.1619 without restraints) Performing minimization step: 3136. Total energy = 3373.5347 kcal/mol (3371.0360 without restraints) Performing minimization step: 3137. Total energy = 3373.4080 kcal/mol (3370.9102 without restraints) Performing minimization step: 3138. Total energy = 3373.2813 kcal/mol (3370.7843 without restraints) Performing minimization step: 3139. Total energy = 3373.1547 kcal/mol (3370.6586 without restraints) Performing minimization step: 3140. Total energy = 3373.0282 kcal/mol (3370.5329 without restraints) Performing minimization step: 3141. Total energy = 3372.9022 kcal/mol (3370.4077 without restraints) Performing minimization step: 3142. Total energy = 3372.7758 kcal/mol (3370.2821 without restraints) Performing minimization step: 3143. Total energy = 3372.6494 kcal/mol (3370.1566 without restraints) Performing minimization step: 3144. Total energy = 3372.5232 kcal/mol (3370.0312 without restraints) Performing minimization step: 3145. Total energy = 3372.3973 kcal/mol (3369.9061 without restraints) Performing minimization step: 3146. Total energy = 3372.2716 kcal/mol (3369.7812 without restraints) Performing minimization step: 3147. Total energy = 3372.1450 kcal/mol (3369.6554 without restraints) Performing minimization step: 3148. Total energy = 3372.0188 kcal/mol (3369.5300 without restraints) Performing minimization step: 3149. Total energy = 3371.8929 kcal/mol (3369.4049 without restraints) Performing minimization step: 3150. Total energy = 3371.7672 kcal/mol (3369.2803 without restraints) Performing minimization step: 3151. Total energy = 3371.6414 kcal/mol (3369.1550 without restraints) Performing minimization step: 3152. Total energy = 3371.5152 kcal/mol (3369.0296 without restraints) Performing minimization step: 3153. Total energy = 3371.3895 kcal/mol (3368.9049 without restraints) Performing minimization step: 3154. Total energy = 3371.2637 kcal/mol (3368.7798 without restraints) Performing minimization step: 3155. Total energy = 3371.1376 kcal/mol (3368.6545 without restraints) Performing minimization step: 3156. Total energy = 3371.0117 kcal/mol (3368.5293 without restraints) Performing minimization step: 3157. Total energy = 3370.8860 kcal/mol (3368.4045 without restraints) Performing minimization step: 3158. Total energy = 3370.7600 kcal/mol (3368.2793 without restraints) Performing minimization step: 3159. Total energy = 3370.6344 kcal/mol (3368.1544 without restraints) Performing minimization step: 3160. Total energy = 3370.5084 kcal/mol (3368.0293 without restraints) Performing minimization step: 3161. Total energy = 3370.3828 kcal/mol (3367.9045 without restraints) Performing minimization step: 3162. Total energy = 3370.2574 kcal/mol (3367.7799 without restraints) Performing minimization step: 3163. Total energy = 3370.1318 kcal/mol (3367.6551 without restraints) Performing minimization step: 3164. Total energy = 3370.0058 kcal/mol (3367.5297 without restraints) Performing minimization step: 3165. Total energy = 3369.8805 kcal/mol (3367.4055 without restraints) Performing minimization step: 3166. Total energy = 3369.7550 kcal/mol (3367.2808 without restraints) Performing minimization step: 3167. Total energy = 3369.6296 kcal/mol (3367.1562 without restraints) Performing minimization step: 3168. Total energy = 3369.5043 kcal/mol (3367.0316 without restraints) Performing minimization step: 3169. Total energy = 3369.3790 kcal/mol (3366.9072 without restraints) Performing minimization step: 3170. Total energy = 3369.2533 kcal/mol (3366.7822 without restraints) Performing minimization step: 3171. Total energy = 3369.1278 kcal/mol (3366.6575 without restraints) Performing minimization step: 3172. Total energy = 3369.0024 kcal/mol (3366.5330 without restraints) Performing minimization step: 3173. Total energy = 3368.8772 kcal/mol (3366.4086 without restraints) Performing minimization step: 3174. Total energy = 3368.7517 kcal/mol (3366.2839 without restraints) Performing minimization step: 3175. Total energy = 3368.6270 kcal/mol (3366.1600 without restraints) Performing minimization step: 3176. Total energy = 3368.5020 kcal/mol (3366.0358 without restraints) Performing minimization step: 3177. Total energy = 3368.3770 kcal/mol (3365.9116 without restraints) Performing minimization step: 3178. Total energy = 3368.2523 kcal/mol (3365.7876 without restraints) Performing minimization step: 3179. Total energy = 3368.1273 kcal/mol (3365.6634 without restraints) Performing minimization step: 3180. Total energy = 3368.0019 kcal/mol (3365.5389 without restraints) Performing minimization step: 3181. Total energy = 3367.8767 kcal/mol (3365.4143 without restraints) Performing minimization step: 3182. Total energy = 3367.7516 kcal/mol (3365.2900 without restraints) Performing minimization step: 3183. Total energy = 3367.6269 kcal/mol (3365.1662 without restraints) Performing minimization step: 3184. Total energy = 3367.5021 kcal/mol (3365.0422 without restraints) Performing minimization step: 3185. Total energy = 3367.3776 kcal/mol (3364.9185 without restraints) Performing minimization step: 3186. Total energy = 3367.2531 kcal/mol (3364.7947 without restraints) Performing minimization step: 3187. Total energy = 3367.1286 kcal/mol (3364.6711 without restraints) Performing minimization step: 3188. Total energy = 3367.0046 kcal/mol (3364.5479 without restraints) Performing minimization step: 3189. Total energy = 3366.8796 kcal/mol (3364.4237 without restraints) Performing minimization step: 3190. Total energy = 3366.7551 kcal/mol (3364.2999 without restraints) Performing minimization step: 3191. Total energy = 3366.6306 kcal/mol (3364.1763 without restraints) Performing minimization step: 3192. Total energy = 3366.5062 kcal/mol (3364.0527 without restraints) Performing minimization step: 3193. Total energy = 3366.3818 kcal/mol (3363.9290 without restraints) Performing minimization step: 3194. Total energy = 3366.2578 kcal/mol (3363.8058 without restraints) Performing minimization step: 3195. Total energy = 3366.1338 kcal/mol (3363.6825 without restraints) Performing minimization step: 3196. Total energy = 3366.0093 kcal/mol (3363.5588 without restraints) Performing minimization step: 3197. Total energy = 3365.8849 kcal/mol (3363.4351 without restraints) Performing minimization step: 3198. Total energy = 3365.7607 kcal/mol (3363.3118 without restraints) Performing minimization step: 3199. Total energy = 3365.6365 kcal/mol (3363.1884 without restraints) Performing minimization step: 3200. Total energy = 3365.5123 kcal/mol (3363.0648 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 3365.3880 kcal/mol (3362.9415 without restraints) Performing minimization step: 3202. Total energy = 3365.2639 kcal/mol (3362.8182 without restraints) Performing minimization step: 3203. Total energy = 3365.1399 kcal/mol (3362.6949 without restraints) Performing minimization step: 3204. Total energy = 3365.0159 kcal/mol (3362.5718 without restraints) Performing minimization step: 3205. Total energy = 3364.8922 kcal/mol (3362.4488 without restraints) Performing minimization step: 3206. Total energy = 3364.7682 kcal/mol (3362.3256 without restraints) Performing minimization step: 3207. Total energy = 3364.6444 kcal/mol (3362.2025 without restraints) Performing minimization step: 3208. Total energy = 3364.5205 kcal/mol (3362.0794 without restraints) Performing minimization step: 3209. Total energy = 3364.3967 kcal/mol (3361.9564 without restraints) Performing minimization step: 3210. Total energy = 3364.2736 kcal/mol (3361.8341 without restraints) Performing minimization step: 3211. Total energy = 3364.1498 kcal/mol (3361.7109 without restraints) Performing minimization step: 3212. Total energy = 3364.0263 kcal/mol (3361.5884 without restraints) Performing minimization step: 3213. Total energy = 3363.9022 kcal/mol (3361.4650 without restraints) Performing minimization step: 3214. Total energy = 3363.7779 kcal/mol (3361.3413 without restraints) Performing minimization step: 3215. Total energy = 3363.6539 kcal/mol (3361.2183 without restraints) Performing minimization step: 3216. Total energy = 3363.5307 kcal/mol (3361.0958 without restraints) Performing minimization step: 3217. Total energy = 3363.4078 kcal/mol (3360.9737 without restraints) Performing minimization step: 3218. Total energy = 3363.2848 kcal/mol (3360.8515 without restraints) Performing minimization step: 3219. Total energy = 3363.1618 kcal/mol (3360.7295 without restraints) Performing minimization step: 3220. Total energy = 3363.0385 kcal/mol (3360.6066 without restraints) Performing minimization step: 3221. Total energy = 3362.9151 kcal/mol (3360.4840 without restraints) Performing minimization step: 3222. Total energy = 3362.7919 kcal/mol (3360.3617 without restraints) Performing minimization step: 3223. Total energy = 3362.6685 kcal/mol (3360.2389 without restraints) Performing minimization step: 3224. Total energy = 3362.5452 kcal/mol (3360.1165 without restraints) Performing minimization step: 3225. Total energy = 3362.4220 kcal/mol (3359.9941 without restraints) Performing minimization step: 3226. Total energy = 3362.2990 kcal/mol (3359.8718 without restraints) Performing minimization step: 3227. Total energy = 3362.1757 kcal/mol (3359.7492 without restraints) Performing minimization step: 3228. Total energy = 3362.0525 kcal/mol (3359.6268 without restraints) Performing minimization step: 3229. Total energy = 3361.9296 kcal/mol (3359.5047 without restraints) Performing minimization step: 3230. Total energy = 3361.8068 kcal/mol (3359.3826 without restraints) Performing minimization step: 3231. Total energy = 3361.6838 kcal/mol (3359.2604 without restraints) Performing minimization step: 3232. Total energy = 3361.5611 kcal/mol (3359.1384 without restraints) Performing minimization step: 3233. Total energy = 3361.4381 kcal/mol (3359.0161 without restraints) Performing minimization step: 3234. Total energy = 3361.3152 kcal/mol (3358.8940 without restraints) Performing minimization step: 3235. Total energy = 3361.1921 kcal/mol (3358.7717 without restraints) Performing minimization step: 3236. Total energy = 3361.0694 kcal/mol (3358.6497 without restraints) Performing minimization step: 3237. Total energy = 3360.9463 kcal/mol (3358.5275 without restraints) Performing minimization step: 3238. Total energy = 3360.8236 kcal/mol (3358.4055 without restraints) Performing minimization step: 3239. Total energy = 3360.7011 kcal/mol (3358.2837 without restraints) Performing minimization step: 3240. Total energy = 3360.5790 kcal/mol (3358.1624 without restraints) Performing minimization step: 3241. Total energy = 3360.4564 kcal/mol (3358.0406 without restraints) Performing minimization step: 3242. Total energy = 3360.3337 kcal/mol (3357.9186 without restraints) Performing minimization step: 3243. Total energy = 3360.2112 kcal/mol (3357.7969 without restraints) Performing minimization step: 3244. Total energy = 3360.0886 kcal/mol (3357.6750 without restraints) Performing minimization step: 3245. Total energy = 3359.9667 kcal/mol (3357.5540 without restraints) Performing minimization step: 3246. Total energy = 3359.8444 kcal/mol (3357.4324 without restraints) Performing minimization step: 3247. Total energy = 3359.7221 kcal/mol (3357.3108 without restraints) Performing minimization step: 3248. Total energy = 3359.6000 kcal/mol (3357.1895 without restraints) Performing minimization step: 3249. Total energy = 3359.4771 kcal/mol (3357.0673 without restraints) Performing minimization step: 3250. Total energy = 3359.3548 kcal/mol (3356.9456 without restraints) Performing minimization step: 3251. Total energy = 3359.2325 kcal/mol (3356.8242 without restraints) Performing minimization step: 3252. Total energy = 3359.1106 kcal/mol (3356.7030 without restraints) Performing minimization step: 3253. Total energy = 3358.9882 kcal/mol (3356.5815 without restraints) Performing minimization step: 3254. Total energy = 3358.8663 kcal/mol (3356.4604 without restraints) Performing minimization step: 3255. Total energy = 3358.7438 kcal/mol (3356.3385 without restraints) Performing minimization step: 3256. Total energy = 3358.6222 kcal/mol (3356.2177 without restraints) Performing minimization step: 3257. Total energy = 3358.5005 kcal/mol (3356.0967 without restraints) Performing minimization step: 3258. Total energy = 3358.3788 kcal/mol (3355.9758 without restraints) Performing minimization step: 3259. Total energy = 3358.2570 kcal/mol (3355.8547 without restraints) Performing minimization step: 3260. Total energy = 3358.1354 kcal/mol (3355.7338 without restraints) Performing minimization step: 3261. Total energy = 3358.0134 kcal/mol (3355.6127 without restraints) Performing minimization step: 3262. Total energy = 3357.8917 kcal/mol (3355.4917 without restraints) Performing minimization step: 3263. Total energy = 3357.7701 kcal/mol (3355.3709 without restraints) Performing minimization step: 3264. Total energy = 3357.6486 kcal/mol (3355.2500 without restraints) Performing minimization step: 3265. Total energy = 3357.5272 kcal/mol (3355.1293 without restraints) Performing minimization step: 3266. Total energy = 3357.4055 kcal/mol (3355.0084 without restraints) Performing minimization step: 3267. Total energy = 3357.2840 kcal/mol (3354.8875 without restraints) Performing minimization step: 3268. Total energy = 3357.1621 kcal/mol (3354.7665 without restraints) Performing minimization step: 3269. Total energy = 3357.0409 kcal/mol (3354.6460 without restraints) Performing minimization step: 3270. Total energy = 3356.9198 kcal/mol (3354.5257 without restraints) Performing minimization step: 3271. Total energy = 3356.7987 kcal/mol (3354.4053 without restraints) Performing minimization step: 3272. Total energy = 3356.6774 kcal/mol (3354.2849 without restraints) Performing minimization step: 3273. Total energy = 3356.5560 kcal/mol (3354.1640 without restraints) Performing minimization step: 3274. Total energy = 3356.4346 kcal/mol (3354.0433 without restraints) Performing minimization step: 3275. Total energy = 3356.3132 kcal/mol (3353.9227 without restraints) Performing minimization step: 3276. Total energy = 3356.1920 kcal/mol (3353.8023 without restraints) Performing minimization step: 3277. Total energy = 3356.0706 kcal/mol (3353.6816 without restraints) Performing minimization step: 3278. Total energy = 3355.9493 kcal/mol (3353.5612 without restraints) Performing minimization step: 3279. Total energy = 3355.8282 kcal/mol (3353.4407 without restraints) Performing minimization step: 3280. Total energy = 3355.7071 kcal/mol (3353.3204 without restraints) Performing minimization step: 3281. Total energy = 3355.5862 kcal/mol (3353.2000 without restraints) Performing minimization step: 3282. Total energy = 3355.4652 kcal/mol (3353.0797 without restraints) Performing minimization step: 3283. Total energy = 3355.3443 kcal/mol (3352.9598 without restraints) Performing minimization step: 3284. Total energy = 3355.2230 kcal/mol (3352.8392 without restraints) Performing minimization step: 3285. Total energy = 3355.1021 kcal/mol (3352.7189 without restraints) Performing minimization step: 3286. Total energy = 3354.9812 kcal/mol (3352.5988 without restraints) Performing minimization step: 3287. Total energy = 3354.8604 kcal/mol (3352.4788 without restraints) Performing minimization step: 3288. Total energy = 3354.7392 kcal/mol (3352.3581 without restraints) Performing minimization step: 3289. Total energy = 3354.6185 kcal/mol (3352.2384 without restraints) Performing minimization step: 3290. Total energy = 3354.4977 kcal/mol (3352.1182 without restraints) Performing minimization step: 3291. Total energy = 3354.3765 kcal/mol (3351.9978 without restraints) Performing minimization step: 3292. Total energy = 3354.2559 kcal/mol (3351.8779 without restraints) Performing minimization step: 3293. Total energy = 3354.1354 kcal/mol (3351.7581 without restraints) Performing minimization step: 3294. Total energy = 3354.0153 kcal/mol (3351.6388 without restraints) Performing minimization step: 3295. Total energy = 3353.8951 kcal/mol (3351.5192 without restraints) Performing minimization step: 3296. Total energy = 3353.7746 kcal/mol (3351.3995 without restraints) Performing minimization step: 3297. Total energy = 3353.6545 kcal/mol (3351.2801 without restraints) Performing minimization step: 3298. Total energy = 3353.5343 kcal/mol (3351.1606 without restraints) Performing minimization step: 3299. Total energy = 3353.4136 kcal/mol (3351.0406 without restraints) Performing minimization step: 3300. Total energy = 3353.2932 kcal/mol (3350.9210 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 3353.1727 kcal/mol (3350.8012 without restraints) Performing minimization step: 3302. Total energy = 3353.0523 kcal/mol (3350.6815 without restraints) Performing minimization step: 3303. Total energy = 3352.9321 kcal/mol (3350.5621 without restraints) Performing minimization step: 3304. Total energy = 3352.8118 kcal/mol (3350.4424 without restraints) Performing minimization step: 3305. Total energy = 3352.6917 kcal/mol (3350.3231 without restraints) Performing minimization step: 3306. Total energy = 3352.5715 kcal/mol (3350.2036 without restraints) Performing minimization step: 3307. Total energy = 3352.4510 kcal/mol (3350.0838 without restraints) Performing minimization step: 3308. Total energy = 3352.3311 kcal/mol (3349.9646 without restraints) Performing minimization step: 3309. Total energy = 3352.2112 kcal/mol (3349.8454 without restraints) Performing minimization step: 3310. Total energy = 3352.0913 kcal/mol (3349.7263 without restraints) Performing minimization step: 3311. Total energy = 3351.9715 kcal/mol (3349.6072 without restraints) Performing minimization step: 3312. Total energy = 3351.8521 kcal/mol (3349.4885 without restraints) Performing minimization step: 3313. Total energy = 3351.7323 kcal/mol (3349.3694 without restraints) Performing minimization step: 3314. Total energy = 3351.6119 kcal/mol (3349.2496 without restraints) Performing minimization step: 3315. Total energy = 3351.4922 kcal/mol (3349.1307 without restraints) Performing minimization step: 3316. Total energy = 3351.3725 kcal/mol (3349.0118 without restraints) Performing minimization step: 3317. Total energy = 3351.2535 kcal/mol (3348.8934 without restraints) Performing minimization step: 3318. Total energy = 3351.1343 kcal/mol (3348.7750 without restraints) Performing minimization step: 3319. Total energy = 3351.0150 kcal/mol (3348.6564 without restraints) Performing minimization step: 3320. Total energy = 3350.8958 kcal/mol (3348.5379 without restraints) Performing minimization step: 3321. Total energy = 3350.7766 kcal/mol (3348.4194 without restraints) Performing minimization step: 3322. Total energy = 3350.6573 kcal/mol (3348.3008 without restraints) Performing minimization step: 3323. Total energy = 3350.5379 kcal/mol (3348.1821 without restraints) Performing minimization step: 3324. Total energy = 3350.4186 kcal/mol (3348.0635 without restraints) Performing minimization step: 3325. Total energy = 3350.2992 kcal/mol (3347.9447 without restraints) Performing minimization step: 3326. Total energy = 3350.1799 kcal/mol (3347.8262 without restraints) Performing minimization step: 3327. Total energy = 3350.0607 kcal/mol (3347.7077 without restraints) Performing minimization step: 3328. Total energy = 3349.9418 kcal/mol (3347.5895 without restraints) Performing minimization step: 3329. Total energy = 3349.8227 kcal/mol (3347.4712 without restraints) Performing minimization step: 3330. Total energy = 3349.7037 kcal/mol (3347.3529 without restraints) Performing minimization step: 3331. Total energy = 3349.5851 kcal/mol (3347.2348 without restraints) Performing minimization step: 3332. Total energy = 3349.4660 kcal/mol (3347.1166 without restraints) Performing minimization step: 3333. Total energy = 3349.3474 kcal/mol (3346.9986 without restraints) Performing minimization step: 3334. Total energy = 3349.2286 kcal/mol (3346.8806 without restraints) Performing minimization step: 3335. Total energy = 3349.1098 kcal/mol (3346.7625 without restraints) Performing minimization step: 3336. Total energy = 3348.9910 kcal/mol (3346.6444 without restraints) Performing minimization step: 3337. Total energy = 3348.8722 kcal/mol (3346.5263 without restraints) Performing minimization step: 3338. Total energy = 3348.7538 kcal/mol (3346.4088 without restraints) Performing minimization step: 3339. Total energy = 3348.6351 kcal/mol (3346.2905 without restraints) Performing minimization step: 3340. Total energy = 3348.5162 kcal/mol (3346.1724 without restraints) Performing minimization step: 3341. Total energy = 3348.3976 kcal/mol (3346.0545 without restraints) Performing minimization step: 3342. Total energy = 3348.2791 kcal/mol (3345.9367 without restraints) Performing minimization step: 3343. Total energy = 3348.1606 kcal/mol (3345.8189 without restraints) Performing minimization step: 3344. Total energy = 3348.0421 kcal/mol (3345.7010 without restraints) Performing minimization step: 3345. Total energy = 3347.9233 kcal/mol (3345.5829 without restraints) Performing minimization step: 3346. Total energy = 3347.8046 kcal/mol (3345.4650 without restraints) Performing minimization step: 3347. Total energy = 3347.6859 kcal/mol (3345.3470 without restraints) Performing minimization step: 3348. Total energy = 3347.5676 kcal/mol (3345.2293 without restraints) Performing minimization step: 3349. Total energy = 3347.4491 kcal/mol (3345.1116 without restraints) Performing minimization step: 3350. Total energy = 3347.3309 kcal/mol (3344.9941 without restraints) Performing minimization step: 3351. Total energy = 3347.2129 kcal/mol (3344.8768 without restraints) Performing minimization step: 3352. Total energy = 3347.0948 kcal/mol (3344.7594 without restraints) Performing minimization step: 3353. Total energy = 3346.9765 kcal/mol (3344.6418 without restraints) Performing minimization step: 3354. Total energy = 3346.8585 kcal/mol (3344.5244 without restraints) Performing minimization step: 3355. Total energy = 3346.7405 kcal/mol (3344.4071 without restraints) Performing minimization step: 3356. Total energy = 3346.6223 kcal/mol (3344.2896 without restraints) Performing minimization step: 3357. Total energy = 3346.5047 kcal/mol (3344.1728 without restraints) Performing minimization step: 3358. Total energy = 3346.3867 kcal/mol (3344.0554 without restraints) Performing minimization step: 3359. Total energy = 3346.2688 kcal/mol (3343.9382 without restraints) Performing minimization step: 3360. Total energy = 3346.1509 kcal/mol (3343.8210 without restraints) Performing minimization step: 3361. Total energy = 3346.0332 kcal/mol (3343.7040 without restraints) Performing minimization step: 3362. Total energy = 3345.9155 kcal/mol (3343.5870 without restraints) Performing minimization step: 3363. Total energy = 3345.7974 kcal/mol (3343.4695 without restraints) Performing minimization step: 3364. Total energy = 3345.6799 kcal/mol (3343.3527 without restraints) Performing minimization step: 3365. Total energy = 3345.5621 kcal/mol (3343.2357 without restraints) Performing minimization step: 3366. Total energy = 3345.4445 kcal/mol (3343.1186 without restraints) Performing minimization step: 3367. Total energy = 3345.3270 kcal/mol (3343.0020 without restraints) Performing minimization step: 3368. Total energy = 3345.2099 kcal/mol (3342.8855 without restraints) Performing minimization step: 3369. Total energy = 3345.0930 kcal/mol (3342.7693 without restraints) Performing minimization step: 3370. Total energy = 3344.9757 kcal/mol (3342.6526 without restraints) Performing minimization step: 3371. Total energy = 3344.8584 kcal/mol (3342.5361 without restraints) Performing minimization step: 3372. Total energy = 3344.7410 kcal/mol (3342.4193 without restraints) Performing minimization step: 3373. Total energy = 3344.6237 kcal/mol (3342.3028 without restraints) Performing minimization step: 3374. Total energy = 3344.5062 kcal/mol (3342.1859 without restraints) Performing minimization step: 3375. Total energy = 3344.3894 kcal/mol (3342.0697 without restraints) Performing minimization step: 3376. Total energy = 3344.2723 kcal/mol (3341.9533 without restraints) Performing minimization step: 3377. Total energy = 3344.1552 kcal/mol (3341.8369 without restraints) Performing minimization step: 3378. Total energy = 3344.0381 kcal/mol (3341.7206 without restraints) Performing minimization step: 3379. Total energy = 3343.9208 kcal/mol (3341.6039 without restraints) Performing minimization step: 3380. Total energy = 3343.8036 kcal/mol (3341.4874 without restraints) Performing minimization step: 3381. Total energy = 3343.6870 kcal/mol (3341.3715 without restraints) Performing minimization step: 3382. Total energy = 3343.5704 kcal/mol (3341.2555 without restraints) Performing minimization step: 3383. Total energy = 3343.4532 kcal/mol (3341.1391 without restraints) Performing minimization step: 3384. Total energy = 3343.3367 kcal/mol (3341.0233 without restraints) Performing minimization step: 3385. Total energy = 3343.2199 kcal/mol (3340.9071 without restraints) Performing minimization step: 3386. Total energy = 3343.1032 kcal/mol (3340.7911 without restraints) Performing minimization step: 3387. Total energy = 3342.9866 kcal/mol (3340.6750 without restraints) Performing minimization step: 3388. Total energy = 3342.8697 kcal/mol (3340.5588 without restraints) Performing minimization step: 3389. Total energy = 3342.7536 kcal/mol (3340.4434 without restraints) Performing minimization step: 3390. Total energy = 3342.6370 kcal/mol (3340.3275 without restraints) Performing minimization step: 3391. Total energy = 3342.5204 kcal/mol (3340.2116 without restraints) Performing minimization step: 3392. Total energy = 3342.4035 kcal/mol (3340.0952 without restraints) Performing minimization step: 3393. Total energy = 3342.2872 kcal/mol (3339.9798 without restraints) Performing minimization step: 3394. Total energy = 3342.1708 kcal/mol (3339.8638 without restraints) Performing minimization step: 3395. Total energy = 3342.0545 kcal/mol (3339.7484 without restraints) Performing minimization step: 3396. Total energy = 3341.9383 kcal/mol (3339.6328 without restraints) Performing minimization step: 3397. Total energy = 3341.8225 kcal/mol (3339.5178 without restraints) Performing minimization step: 3398. Total energy = 3341.7059 kcal/mol (3339.4019 without restraints) Performing minimization step: 3399. Total energy = 3341.5898 kcal/mol (3339.2864 without restraints) Performing minimization step: 3400. Total energy = 3341.4739 kcal/mol (3339.1712 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 3341.3576 kcal/mol (3339.0554 without restraints) Performing minimization step: 3402. Total energy = 3341.2418 kcal/mol (3338.9404 without restraints) Performing minimization step: 3403. Total energy = 3341.1258 kcal/mol (3338.8250 without restraints) Performing minimization step: 3404. Total energy = 3341.0100 kcal/mol (3338.7100 without restraints) Performing minimization step: 3405. Total energy = 3340.8940 kcal/mol (3338.5946 without restraints) Performing minimization step: 3406. Total energy = 3340.7785 kcal/mol (3338.4798 without restraints) Performing minimization step: 3407. Total energy = 3340.6628 kcal/mol (3338.3648 without restraints) Performing minimization step: 3408. Total energy = 3340.5471 kcal/mol (3338.2496 without restraints) Performing minimization step: 3409. Total energy = 3340.4317 kcal/mol (3338.1349 without restraints) Performing minimization step: 3410. Total energy = 3340.3163 kcal/mol (3338.0202 without restraints) Performing minimization step: 3411. Total energy = 3340.2010 kcal/mol (3337.9056 without restraints) Performing minimization step: 3412. Total energy = 3340.0855 kcal/mol (3337.7908 without restraints) Performing minimization step: 3413. Total energy = 3339.9701 kcal/mol (3337.6760 without restraints) Performing minimization step: 3414. Total energy = 3339.8550 kcal/mol (3337.5616 without restraints) Performing minimization step: 3415. Total energy = 3339.7398 kcal/mol (3337.4471 without restraints) Performing minimization step: 3416. Total energy = 3339.6246 kcal/mol (3337.3325 without restraints) Performing minimization step: 3417. Total energy = 3339.5094 kcal/mol (3337.2181 without restraints) Performing minimization step: 3418. Total energy = 3339.3945 kcal/mol (3337.1037 without restraints) Performing minimization step: 3419. Total energy = 3339.2795 kcal/mol (3336.9895 without restraints) Performing minimization step: 3420. Total energy = 3339.1640 kcal/mol (3336.8746 without restraints) Performing minimization step: 3421. Total energy = 3339.0495 kcal/mol (3336.7607 without restraints) Performing minimization step: 3422. Total energy = 3338.9346 kcal/mol (3336.6465 without restraints) Performing minimization step: 3423. Total energy = 3338.8200 kcal/mol (3336.5325 without restraints) Performing minimization step: 3424. Total energy = 3338.7051 kcal/mol (3336.4182 without restraints) Performing minimization step: 3425. Total energy = 3338.5904 kcal/mol (3336.3043 without restraints) Performing minimization step: 3426. Total energy = 3338.4759 kcal/mol (3336.1904 without restraints) Performing minimization step: 3427. Total energy = 3338.3608 kcal/mol (3336.0759 without restraints) Performing minimization step: 3428. Total energy = 3338.2461 kcal/mol (3335.9620 without restraints) Performing minimization step: 3429. Total energy = 3338.1314 kcal/mol (3335.8479 without restraints) Performing minimization step: 3430. Total energy = 3338.0168 kcal/mol (3335.7339 without restraints) Performing minimization step: 3431. Total energy = 3337.9023 kcal/mol (3335.6202 without restraints) Performing minimization step: 3432. Total energy = 3337.7879 kcal/mol (3335.5065 without restraints) Performing minimization step: 3433. Total energy = 3337.6737 kcal/mol (3335.3928 without restraints) Performing minimization step: 3434. Total energy = 3337.5592 kcal/mol (3335.2789 without restraints) Performing minimization step: 3435. Total energy = 3337.4448 kcal/mol (3335.1651 without restraints) Performing minimization step: 3436. Total energy = 3337.3304 kcal/mol (3335.0514 without restraints) Performing minimization step: 3437. Total energy = 3337.2158 kcal/mol (3334.9374 without restraints) Performing minimization step: 3438. Total energy = 3337.1012 kcal/mol (3334.8235 without restraints) Performing minimization step: 3439. Total energy = 3336.9869 kcal/mol (3334.7098 without restraints) Performing minimization step: 3440. Total energy = 3336.8727 kcal/mol (3334.5963 without restraints) Performing minimization step: 3441. Total energy = 3336.7587 kcal/mol (3334.4830 without restraints) Performing minimization step: 3442. Total energy = 3336.6444 kcal/mol (3334.3693 without restraints) Performing minimization step: 3443. Total energy = 3336.5304 kcal/mol (3334.2560 without restraints) Performing minimization step: 3444. Total energy = 3336.4164 kcal/mol (3334.1426 without restraints) Performing minimization step: 3445. Total energy = 3336.3022 kcal/mol (3334.0289 without restraints) Performing minimization step: 3446. Total energy = 3336.1881 kcal/mol (3333.9156 without restraints) Performing minimization step: 3447. Total energy = 3336.0741 kcal/mol (3333.8024 without restraints) Performing minimization step: 3448. Total energy = 3335.9607 kcal/mol (3333.6895 without restraints) Performing minimization step: 3449. Total energy = 3335.8471 kcal/mol (3333.5765 without restraints) Performing minimization step: 3450. Total energy = 3335.7336 kcal/mol (3333.4638 without restraints) Performing minimization step: 3451. Total energy = 3335.6202 kcal/mol (3333.3510 without restraints) Performing minimization step: 3452. Total energy = 3335.5069 kcal/mol (3333.2383 without restraints) Performing minimization step: 3453. Total energy = 3335.3931 kcal/mol (3333.1252 without restraints) Performing minimization step: 3454. Total energy = 3335.2791 kcal/mol (3333.0118 without restraints) Performing minimization step: 3455. Total energy = 3335.1658 kcal/mol (3332.8992 without restraints) Performing minimization step: 3456. Total energy = 3335.0526 kcal/mol (3332.7866 without restraints) Performing minimization step: 3457. Total energy = 3334.9388 kcal/mol (3332.6736 without restraints) Performing minimization step: 3458. Total energy = 3334.8260 kcal/mol (3332.5612 without restraints) Performing minimization step: 3459. Total energy = 3334.7126 kcal/mol (3332.4485 without restraints) Performing minimization step: 3460. Total energy = 3334.5989 kcal/mol (3332.3355 without restraints) Performing minimization step: 3461. Total energy = 3334.4857 kcal/mol (3332.2228 without restraints) Performing minimization step: 3462. Total energy = 3334.3724 kcal/mol (3332.1103 without restraints) Performing minimization step: 3463. Total energy = 3334.2592 kcal/mol (3331.9976 without restraints) Performing minimization step: 3464. Total energy = 3334.1460 kcal/mol (3331.8853 without restraints) Performing minimization step: 3465. Total energy = 3334.0330 kcal/mol (3331.7727 without restraints) Performing minimization step: 3466. Total energy = 3333.9200 kcal/mol (3331.6604 without restraints) Performing minimization step: 3467. Total energy = 3333.8064 kcal/mol (3331.5475 without restraints) Performing minimization step: 3468. Total energy = 3333.6935 kcal/mol (3331.4352 without restraints) Performing minimization step: 3469. Total energy = 3333.5805 kcal/mol (3331.3228 without restraints) Performing minimization step: 3470. Total energy = 3333.4679 kcal/mol (3331.2109 without restraints) Performing minimization step: 3471. Total energy = 3333.3553 kcal/mol (3331.0989 without restraints) Performing minimization step: 3472. Total energy = 3333.2425 kcal/mol (3330.9868 without restraints) Performing minimization step: 3473. Total energy = 3333.1302 kcal/mol (3330.8752 without restraints) Performing minimization step: 3474. Total energy = 3333.0177 kcal/mol (3330.7632 without restraints) Performing minimization step: 3475. Total energy = 3332.9050 kcal/mol (3330.6511 without restraints) Performing minimization step: 3476. Total energy = 3332.7925 kcal/mol (3330.5393 without restraints) Performing minimization step: 3477. Total energy = 3332.6798 kcal/mol (3330.4272 without restraints) Performing minimization step: 3478. Total energy = 3332.5673 kcal/mol (3330.3152 without restraints) Performing minimization step: 3479. Total energy = 3332.4544 kcal/mol (3330.2030 without restraints) Performing minimization step: 3480. Total energy = 3332.3420 kcal/mol (3330.0913 without restraints) Performing minimization step: 3481. Total energy = 3332.2298 kcal/mol (3329.9797 without restraints) Performing minimization step: 3482. Total energy = 3332.1171 kcal/mol (3329.8676 without restraints) Performing minimization step: 3483. Total energy = 3332.0051 kcal/mol (3329.7564 without restraints) Performing minimization step: 3484. Total energy = 3331.8931 kcal/mol (3329.6450 without restraints) Performing minimization step: 3485. Total energy = 3331.7811 kcal/mol (3329.5335 without restraints) Performing minimization step: 3486. Total energy = 3331.6690 kcal/mol (3329.4221 without restraints) Performing minimization step: 3487. Total energy = 3331.5570 kcal/mol (3329.3107 without restraints) Performing minimization step: 3488. Total energy = 3331.4451 kcal/mol (3329.1995 without restraints) Performing minimization step: 3489. Total energy = 3331.3332 kcal/mol (3329.0881 without restraints) Performing minimization step: 3490. Total energy = 3331.2211 kcal/mol (3328.9766 without restraints) Performing minimization step: 3491. Total energy = 3331.1094 kcal/mol (3328.8657 without restraints) Performing minimization step: 3492. Total energy = 3330.9975 kcal/mol (3328.7544 without restraints) Performing minimization step: 3493. Total energy = 3330.8859 kcal/mol (3328.6433 without restraints) Performing minimization step: 3494. Total energy = 3330.7743 kcal/mol (3328.5324 without restraints) Performing minimization step: 3495. Total energy = 3330.6627 kcal/mol (3328.4214 without restraints) Performing minimization step: 3496. Total energy = 3330.5509 kcal/mol (3328.3102 without restraints) Performing minimization step: 3497. Total energy = 3330.4394 kcal/mol (3328.1993 without restraints) Performing minimization step: 3498. Total energy = 3330.3280 kcal/mol (3328.0886 without restraints) Performing minimization step: 3499. Total energy = 3330.2164 kcal/mol (3327.9776 without restraints) Performing minimization step: 3500. Total energy = 3330.1051 kcal/mol (3327.8671 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 3329.9937 kcal/mol (3327.7562 without restraints) Performing minimization step: 3502. Total energy = 3329.8825 kcal/mol (3327.6456 without restraints) Performing minimization step: 3503. Total energy = 3329.7713 kcal/mol (3327.5350 without restraints) Performing minimization step: 3504. Total energy = 3329.6597 kcal/mol (3327.4240 without restraints) Performing minimization step: 3505. Total energy = 3329.5490 kcal/mol (3327.3139 without restraints) Performing minimization step: 3506. Total energy = 3329.4379 kcal/mol (3327.2035 without restraints) Performing minimization step: 3507. Total energy = 3329.3267 kcal/mol (3327.0928 without restraints) Performing minimization step: 3508. Total energy = 3329.2157 kcal/mol (3326.9825 without restraints) Performing minimization step: 3509. Total energy = 3329.1043 kcal/mol (3326.8718 without restraints) Performing minimization step: 3510. Total energy = 3328.9934 kcal/mol (3326.7615 without restraints) Performing minimization step: 3511. Total energy = 3328.8824 kcal/mol (3326.6511 without restraints) Performing minimization step: 3512. Total energy = 3328.7717 kcal/mol (3326.5410 without restraints) Performing minimization step: 3513. Total energy = 3328.6612 kcal/mol (3326.4312 without restraints) Performing minimization step: 3514. Total energy = 3328.5513 kcal/mol (3326.3218 without restraints) Performing minimization step: 3515. Total energy = 3328.4404 kcal/mol (3326.2115 without restraints) Performing minimization step: 3516. Total energy = 3328.3293 kcal/mol (3326.1010 without restraints) Performing minimization step: 3517. Total energy = 3328.2187 kcal/mol (3325.9911 without restraints) Performing minimization step: 3518. Total energy = 3328.1082 kcal/mol (3325.8812 without restraints) Performing minimization step: 3519. Total energy = 3327.9975 kcal/mol (3325.7711 without restraints) Performing minimization step: 3520. Total energy = 3327.8871 kcal/mol (3325.6613 without restraints) Performing minimization step: 3521. Total energy = 3327.7771 kcal/mol (3325.5519 without restraints) Performing minimization step: 3522. Total energy = 3327.6668 kcal/mol (3325.4422 without restraints) Performing minimization step: 3523. Total energy = 3327.5565 kcal/mol (3325.3325 without restraints) Performing minimization step: 3524. Total energy = 3327.4460 kcal/mol (3325.2227 without restraints) Performing minimization step: 3525. Total energy = 3327.3360 kcal/mol (3325.1133 without restraints) Performing minimization step: 3526. Total energy = 3327.2256 kcal/mol (3325.0035 without restraints) Performing minimization step: 3527. Total energy = 3327.1155 kcal/mol (3324.8940 without restraints) Performing minimization step: 3528. Total energy = 3327.0053 kcal/mol (3324.7843 without restraints) Performing minimization step: 3529. Total energy = 3326.8954 kcal/mol (3324.6751 without restraints) Performing minimization step: 3530. Total energy = 3326.7852 kcal/mol (3324.5655 without restraints) Performing minimization step: 3531. Total energy = 3326.6755 kcal/mol (3324.4567 without restraints) Performing minimization step: 3532. Total energy = 3326.5659 kcal/mol (3324.3474 without restraints) Performing minimization step: 3533. Total energy = 3326.4558 kcal/mol (3324.2380 without restraints) Performing minimization step: 3534. Total energy = 3326.3452 kcal/mol (3324.1279 without restraints) Performing minimization step: 3535. Total energy = 3326.2354 kcal/mol (3324.0188 without restraints) Performing minimization step: 3536. Total energy = 3326.1260 kcal/mol (3323.9099 without restraints) Performing minimization step: 3537. Total energy = 3326.0163 kcal/mol (3323.8009 without restraints) Performing minimization step: 3538. Total energy = 3325.9068 kcal/mol (3323.6919 without restraints) Performing minimization step: 3539. Total energy = 3325.7973 kcal/mol (3323.5832 without restraints) Performing minimization step: 3540. Total energy = 3325.6877 kcal/mol (3323.4741 without restraints) Performing minimization step: 3541. Total energy = 3325.5782 kcal/mol (3323.3652 without restraints) Performing minimization step: 3542. Total energy = 3325.4688 kcal/mol (3323.2564 without restraints) Performing minimization step: 3543. Total energy = 3325.3593 kcal/mol (3323.1475 without restraints) Performing minimization step: 3544. Total energy = 3325.2499 kcal/mol (3323.0387 without restraints) Performing minimization step: 3545. Total energy = 3325.1405 kcal/mol (3322.9300 without restraints) Performing minimization step: 3546. Total energy = 3325.0313 kcal/mol (3322.8214 without restraints) Performing minimization step: 3547. Total energy = 3324.9221 kcal/mol (3322.7128 without restraints) Performing minimization step: 3548. Total energy = 3324.8131 kcal/mol (3322.6043 without restraints) Performing minimization step: 3549. Total energy = 3324.7038 kcal/mol (3322.4958 without restraints) Performing minimization step: 3550. Total energy = 3324.5950 kcal/mol (3322.3874 without restraints) Performing minimization step: 3551. Total energy = 3324.4857 kcal/mol (3322.2787 without restraints) Performing minimization step: 3552. Total energy = 3324.3770 kcal/mol (3322.1706 without restraints) Performing minimization step: 3553. Total energy = 3324.2677 kcal/mol (3322.0619 without restraints) Performing minimization step: 3554. Total energy = 3324.1588 kcal/mol (3321.9535 without restraints) Performing minimization step: 3555. Total energy = 3324.0498 kcal/mol (3321.8452 without restraints) Performing minimization step: 3556. Total energy = 3323.9408 kcal/mol (3321.7368 without restraints) Performing minimization step: 3557. Total energy = 3323.8320 kcal/mol (3321.6286 without restraints) Performing minimization step: 3558. Total energy = 3323.7232 kcal/mol (3321.5204 without restraints) Performing minimization step: 3559. Total energy = 3323.6149 kcal/mol (3321.4128 without restraints) Performing minimization step: 3560. Total energy = 3323.5062 kcal/mol (3321.3048 without restraints) Performing minimization step: 3561. Total energy = 3323.3977 kcal/mol (3321.1968 without restraints) Performing minimization step: 3562. Total energy = 3323.2892 kcal/mol (3321.0889 without restraints) Performing minimization step: 3563. Total energy = 3323.1807 kcal/mol (3320.9809 without restraints) Performing minimization step: 3564. Total energy = 3323.0720 kcal/mol (3320.8729 without restraints) Performing minimization step: 3565. Total energy = 3322.9637 kcal/mol (3320.7651 without restraints) Performing minimization step: 3566. Total energy = 3322.8551 kcal/mol (3320.6571 without restraints) Performing minimization step: 3567. Total energy = 3322.7468 kcal/mol (3320.5494 without restraints) Performing minimization step: 3568. Total energy = 3322.6388 kcal/mol (3320.4420 without restraints) Performing minimization step: 3569. Total energy = 3322.5307 kcal/mol (3320.3346 without restraints) Performing minimization step: 3570. Total energy = 3322.4225 kcal/mol (3320.2268 without restraints) Performing minimization step: 3571. Total energy = 3322.3147 kcal/mol (3320.1199 without restraints) Performing minimization step: 3572. Total energy = 3322.2072 kcal/mol (3320.0128 without restraints) Performing minimization step: 3573. Total energy = 3322.0994 kcal/mol (3319.9057 without restraints) Performing minimization step: 3574. Total energy = 3321.9919 kcal/mol (3319.7986 without restraints) Performing minimization step: 3575. Total energy = 3321.8840 kcal/mol (3319.6913 without restraints) Performing minimization step: 3576. Total energy = 3321.7761 kcal/mol (3319.5840 without restraints) Performing minimization step: 3577. Total energy = 3321.6687 kcal/mol (3319.4772 without restraints) Performing minimization step: 3578. Total energy = 3321.5607 kcal/mol (3319.3698 without restraints) Performing minimization step: 3579. Total energy = 3321.4525 kcal/mol (3319.2622 without restraints) Performing minimization step: 3580. Total energy = 3321.3452 kcal/mol (3319.1554 without restraints) Performing minimization step: 3581. Total energy = 3321.2376 kcal/mol (3319.0484 without restraints) Performing minimization step: 3582. Total energy = 3321.1300 kcal/mol (3318.9414 without restraints) Performing minimization step: 3583. Total energy = 3321.0224 kcal/mol (3318.8344 without restraints) Performing minimization step: 3584. Total energy = 3320.9151 kcal/mol (3318.7277 without restraints) Performing minimization step: 3585. Total energy = 3320.8076 kcal/mol (3318.6209 without restraints) Performing minimization step: 3586. Total energy = 3320.7005 kcal/mol (3318.5146 without restraints) Performing minimization step: 3587. Total energy = 3320.5934 kcal/mol (3318.4076 without restraints) Performing minimization step: 3588. Total energy = 3320.4859 kcal/mol (3318.3009 without restraints) Performing minimization step: 3589. Total energy = 3320.3784 kcal/mol (3318.1940 without restraints) Performing minimization step: 3590. Total energy = 3320.2713 kcal/mol (3318.0874 without restraints) Performing minimization step: 3591. Total energy = 3320.1639 kcal/mol (3317.9806 without restraints) Performing minimization step: 3592. Total energy = 3320.0568 kcal/mol (3317.8741 without restraints) Performing minimization step: 3593. Total energy = 3319.9499 kcal/mol (3317.7678 without restraints) Performing minimization step: 3594. Total energy = 3319.8426 kcal/mol (3317.6610 without restraints) Performing minimization step: 3595. Total energy = 3319.7355 kcal/mol (3317.5546 without restraints) Performing minimization step: 3596. Total energy = 3319.6290 kcal/mol (3317.4486 without restraints) Performing minimization step: 3597. Total energy = 3319.5215 kcal/mol (3317.3417 without restraints) Performing minimization step: 3598. Total energy = 3319.4145 kcal/mol (3317.2353 without restraints) Performing minimization step: 3599. Total energy = 3319.3076 kcal/mol (3317.1288 without restraints) Performing minimization step: 3600. Total energy = 3319.2005 kcal/mol (3317.0224 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 3319.0937 kcal/mol (3316.9162 without restraints) Performing minimization step: 3602. Total energy = 3318.9873 kcal/mol (3316.8104 without restraints) Performing minimization step: 3603. Total energy = 3318.8803 kcal/mol (3316.7040 without restraints) Performing minimization step: 3604. Total energy = 3318.7736 kcal/mol (3316.5977 without restraints) Performing minimization step: 3605. Total energy = 3318.6668 kcal/mol (3316.4916 without restraints) Performing minimization step: 3606. Total energy = 3318.5602 kcal/mol (3316.3856 without restraints) Performing minimization step: 3607. Total energy = 3318.4535 kcal/mol (3316.2794 without restraints) Performing minimization step: 3608. Total energy = 3318.3469 kcal/mol (3316.1735 without restraints) Performing minimization step: 3609. Total energy = 3318.2404 kcal/mol (3316.0677 without restraints) Performing minimization step: 3610. Total energy = 3318.1341 kcal/mol (3315.9618 without restraints) Performing minimization step: 3611. Total energy = 3318.0278 kcal/mol (3315.8561 without restraints) Performing minimization step: 3612. Total energy = 3317.9215 kcal/mol (3315.7504 without restraints) Performing minimization step: 3613. Total energy = 3317.8152 kcal/mol (3315.6447 without restraints) Performing minimization step: 3614. Total energy = 3317.7089 kcal/mol (3315.5389 without restraints) Performing minimization step: 3615. Total energy = 3317.6027 kcal/mol (3315.4333 without restraints) Performing minimization step: 3616. Total energy = 3317.4968 kcal/mol (3315.3280 without restraints) Performing minimization step: 3617. Total energy = 3317.3907 kcal/mol (3315.2223 without restraints) Performing minimization step: 3618. Total energy = 3317.2845 kcal/mol (3315.1170 without restraints) Performing minimization step: 3619. Total energy = 3317.1785 kcal/mol (3315.0114 without restraints) Performing minimization step: 3620. Total energy = 3317.0725 kcal/mol (3314.9060 without restraints) Performing minimization step: 3621. Total energy = 3316.9666 kcal/mol (3314.8006 without restraints) Performing minimization step: 3622. Total energy = 3316.8605 kcal/mol (3314.6951 without restraints) Performing minimization step: 3623. Total energy = 3316.7547 kcal/mol (3314.5898 without restraints) Performing minimization step: 3624. Total energy = 3316.6489 kcal/mol (3314.4847 without restraints) Performing minimization step: 3625. Total energy = 3316.5431 kcal/mol (3314.3794 without restraints) Performing minimization step: 3626. Total energy = 3316.4373 kcal/mol (3314.2741 without restraints) Performing minimization step: 3627. Total energy = 3316.3315 kcal/mol (3314.1690 without restraints) Performing minimization step: 3628. Total energy = 3316.2259 kcal/mol (3314.0639 without restraints) Performing minimization step: 3629. Total energy = 3316.1203 kcal/mol (3313.9588 without restraints) Performing minimization step: 3630. Total energy = 3316.0145 kcal/mol (3313.8536 without restraints) Performing minimization step: 3631. Total energy = 3315.9090 kcal/mol (3313.7486 without restraints) Performing minimization step: 3632. Total energy = 3315.8036 kcal/mol (3313.6440 without restraints) Performing minimization step: 3633. Total energy = 3315.6985 kcal/mol (3313.5393 without restraints) Performing minimization step: 3634. Total energy = 3315.5931 kcal/mol (3313.4345 without restraints) Performing minimization step: 3635. Total energy = 3315.4875 kcal/mol (3313.3295 without restraints) Performing minimization step: 3636. Total energy = 3315.3821 kcal/mol (3313.2247 without restraints) Performing minimization step: 3637. Total energy = 3315.2769 kcal/mol (3313.1199 without restraints) Performing minimization step: 3638. Total energy = 3315.1716 kcal/mol (3313.0153 without restraints) Performing minimization step: 3639. Total energy = 3315.0668 kcal/mol (3312.9109 without restraints) Performing minimization step: 3640. Total energy = 3314.9615 kcal/mol (3312.8062 without restraints) Performing minimization step: 3641. Total energy = 3314.8561 kcal/mol (3312.7014 without restraints) Performing minimization step: 3642. Total energy = 3314.7510 kcal/mol (3312.5969 without restraints) Performing minimization step: 3643. Total energy = 3314.6462 kcal/mol (3312.4926 without restraints) Performing minimization step: 3644. Total energy = 3314.5410 kcal/mol (3312.3880 without restraints) Performing minimization step: 3645. Total energy = 3314.4365 kcal/mol (3312.2841 without restraints) Performing minimization step: 3646. Total energy = 3314.3315 kcal/mol (3312.1796 without restraints) Performing minimization step: 3647. Total energy = 3314.2274 kcal/mol (3312.0761 without restraints) Performing minimization step: 3648. Total energy = 3314.1229 kcal/mol (3311.9720 without restraints) Performing minimization step: 3649. Total energy = 3314.0180 kcal/mol (3311.8677 without restraints) Performing minimization step: 3650. Total energy = 3313.9130 kcal/mol (3311.7633 without restraints) Performing minimization step: 3651. Total energy = 3313.8079 kcal/mol (3311.6587 without restraints) Performing minimization step: 3652. Total energy = 3313.7037 kcal/mol (3311.5552 without restraints) Performing minimization step: 3653. Total energy = 3313.5988 kcal/mol (3311.4509 without restraints) Performing minimization step: 3654. Total energy = 3313.4940 kcal/mol (3311.3466 without restraints) Performing minimization step: 3655. Total energy = 3313.3893 kcal/mol (3311.2424 without restraints) Performing minimization step: 3656. Total energy = 3313.2850 kcal/mol (3311.1387 without restraints) Performing minimization step: 3657. Total energy = 3313.1803 kcal/mol (3311.0345 without restraints) Performing minimization step: 3658. Total energy = 3313.0758 kcal/mol (3310.9307 without restraints) Performing minimization step: 3659. Total energy = 3312.9714 kcal/mol (3310.8268 without restraints) Performing minimization step: 3660. Total energy = 3312.8672 kcal/mol (3310.7231 without restraints) Performing minimization step: 3661. Total energy = 3312.7625 kcal/mol (3310.6189 without restraints) Performing minimization step: 3662. Total energy = 3312.6584 kcal/mol (3310.5154 without restraints) Performing minimization step: 3663. Total energy = 3312.5541 kcal/mol (3310.4116 without restraints) Performing minimization step: 3664. Total energy = 3312.4500 kcal/mol (3310.3082 without restraints) Performing minimization step: 3665. Total energy = 3312.3459 kcal/mol (3310.2045 without restraints) Performing minimization step: 3666. Total energy = 3312.2428 kcal/mol (3310.1020 without restraints) Performing minimization step: 3667. Total energy = 3312.1389 kcal/mol (3309.9986 without restraints) Performing minimization step: 3668. Total energy = 3312.0345 kcal/mol (3309.8948 without restraints) Performing minimization step: 3669. Total energy = 3311.9298 kcal/mol (3309.7907 without restraints) Performing minimization step: 3670. Total energy = 3311.8258 kcal/mol (3309.6872 without restraints) Performing minimization step: 3671. Total energy = 3311.7221 kcal/mol (3309.5840 without restraints) Performing minimization step: 3672. Total energy = 3311.6182 kcal/mol (3309.4807 without restraints) Performing minimization step: 3673. Total energy = 3311.5145 kcal/mol (3309.3775 without restraints) Performing minimization step: 3674. Total energy = 3311.4104 kcal/mol (3309.2740 without restraints) Performing minimization step: 3675. Total energy = 3311.3064 kcal/mol (3309.1705 without restraints) Performing minimization step: 3676. Total energy = 3311.2024 kcal/mol (3309.0671 without restraints) Performing minimization step: 3677. Total energy = 3311.0984 kcal/mol (3308.9636 without restraints) Performing minimization step: 3678. Total energy = 3310.9947 kcal/mol (3308.8605 without restraints) Performing minimization step: 3679. Total energy = 3310.8914 kcal/mol (3308.7577 without restraints) Performing minimization step: 3680. Total energy = 3310.7878 kcal/mol (3308.6546 without restraints) Performing minimization step: 3681. Total energy = 3310.6839 kcal/mol (3308.5513 without restraints) Performing minimization step: 3682. Total energy = 3310.5803 kcal/mol (3308.4482 without restraints) Performing minimization step: 3683. Total energy = 3310.4768 kcal/mol (3308.3453 without restraints) Performing minimization step: 3684. Total energy = 3310.3728 kcal/mol (3308.2420 without restraints) Performing minimization step: 3685. Total energy = 3310.2695 kcal/mol (3308.1390 without restraints) Performing minimization step: 3686. Total energy = 3310.1663 kcal/mol (3308.0365 without restraints) Performing minimization step: 3687. Total energy = 3310.0628 kcal/mol (3307.9335 without restraints) Performing minimization step: 3688. Total energy = 3309.9595 kcal/mol (3307.8308 without restraints) Performing minimization step: 3689. Total energy = 3309.8561 kcal/mol (3307.7279 without restraints) Performing minimization step: 3690. Total energy = 3309.7528 kcal/mol (3307.6251 without restraints) Performing minimization step: 3691. Total energy = 3309.6493 kcal/mol (3307.5221 without restraints) Performing minimization step: 3692. Total energy = 3309.5461 kcal/mol (3307.4194 without restraints) Performing minimization step: 3693. Total energy = 3309.4429 kcal/mol (3307.3168 without restraints) Performing minimization step: 3694. Total energy = 3309.3398 kcal/mol (3307.2142 without restraints) Performing minimization step: 3695. Total energy = 3309.2367 kcal/mol (3307.1117 without restraints) Performing minimization step: 3696. Total energy = 3309.1336 kcal/mol (3307.0091 without restraints) Performing minimization step: 3697. Total energy = 3309.0308 kcal/mol (3306.9068 without restraints) Performing minimization step: 3698. Total energy = 3308.9277 kcal/mol (3306.8043 without restraints) Performing minimization step: 3699. Total energy = 3308.8247 kcal/mol (3306.7019 without restraints) Performing minimization step: 3700. Total energy = 3308.7220 kcal/mol (3306.5996 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 3308.6190 kcal/mol (3306.4972 without restraints) Performing minimization step: 3702. Total energy = 3308.5162 kcal/mol (3306.3949 without restraints) Performing minimization step: 3703. Total energy = 3308.4130 kcal/mol (3306.2922 without restraints) Performing minimization step: 3704. Total energy = 3308.3101 kcal/mol (3306.1899 without restraints) Performing minimization step: 3705. Total energy = 3308.2073 kcal/mol (3306.0876 without restraints) Performing minimization step: 3706. Total energy = 3308.1046 kcal/mol (3305.9855 without restraints) Performing minimization step: 3707. Total energy = 3308.0020 kcal/mol (3305.8834 without restraints) Performing minimization step: 3708. Total energy = 3307.8995 kcal/mol (3305.7814 without restraints) Performing minimization step: 3709. Total energy = 3307.7968 kcal/mol (3305.6792 without restraints) Performing minimization step: 3710. Total energy = 3307.6940 kcal/mol (3305.5770 without restraints) Performing minimization step: 3711. Total energy = 3307.5914 kcal/mol (3305.4750 without restraints) Performing minimization step: 3712. Total energy = 3307.4889 kcal/mol (3305.3729 without restraints) Performing minimization step: 3713. Total energy = 3307.3860 kcal/mol (3305.2705 without restraints) Performing minimization step: 3714. Total energy = 3307.2835 kcal/mol (3305.1684 without restraints) Performing minimization step: 3715. Total energy = 3307.1808 kcal/mol (3305.0663 without restraints) Performing minimization step: 3716. Total energy = 3307.0785 kcal/mol (3304.9648 without restraints) Performing minimization step: 3717. Total energy = 3306.9762 kcal/mol (3304.8629 without restraints) Performing minimization step: 3718. Total energy = 3306.8741 kcal/mol (3304.7612 without restraints) Performing minimization step: 3719. Total energy = 3306.7718 kcal/mol (3304.6597 without restraints) Performing minimization step: 3720. Total energy = 3306.6695 kcal/mol (3304.5577 without restraints) Performing minimization step: 3721. Total energy = 3306.5675 kcal/mol (3304.4563 without restraints) Performing minimization step: 3722. Total energy = 3306.4652 kcal/mol (3304.3546 without restraints) Performing minimization step: 3723. Total energy = 3306.3631 kcal/mol (3304.2530 without restraints) Performing minimization step: 3724. Total energy = 3306.2607 kcal/mol (3304.1510 without restraints) Performing minimization step: 3725. Total energy = 3306.1587 kcal/mol (3304.0496 without restraints) Performing minimization step: 3726. Total energy = 3306.0566 kcal/mol (3303.9480 without restraints) Performing minimization step: 3727. Total energy = 3305.9547 kcal/mol (3303.8466 without restraints) Performing minimization step: 3728. Total energy = 3305.8535 kcal/mol (3303.7459 without restraints) Performing minimization step: 3729. Total energy = 3305.7512 kcal/mol (3303.6442 without restraints) Performing minimization step: 3730. Total energy = 3305.6493 kcal/mol (3303.5428 without restraints) Performing minimization step: 3731. Total energy = 3305.5478 kcal/mol (3303.4418 without restraints) Performing minimization step: 3732. Total energy = 3305.4460 kcal/mol (3303.3406 without restraints) Performing minimization step: 3733. Total energy = 3305.3442 kcal/mol (3303.2394 without restraints) Performing minimization step: 3734. Total energy = 3305.2425 kcal/mol (3303.1381 without restraints) Performing minimization step: 3735. Total energy = 3305.1406 kcal/mol (3303.0366 without restraints) Performing minimization step: 3736. Total energy = 3305.0390 kcal/mol (3302.9356 without restraints) Performing minimization step: 3737. Total energy = 3304.9369 kcal/mol (3302.8339 without restraints) Performing minimization step: 3738. Total energy = 3304.8351 kcal/mol (3302.7328 without restraints) Performing minimization step: 3739. Total energy = 3304.7336 kcal/mol (3302.6318 without restraints) Performing minimization step: 3740. Total energy = 3304.6319 kcal/mol (3302.5305 without restraints) Performing minimization step: 3741. Total energy = 3304.5302 kcal/mol (3302.4294 without restraints) Performing minimization step: 3742. Total energy = 3304.4288 kcal/mol (3302.3286 without restraints) Performing minimization step: 3743. Total energy = 3304.3271 kcal/mol (3302.2274 without restraints) Performing minimization step: 3744. Total energy = 3304.2256 kcal/mol (3302.1264 without restraints) Performing minimization step: 3745. Total energy = 3304.1244 kcal/mol (3302.0256 without restraints) Performing minimization step: 3746. Total energy = 3304.0234 kcal/mol (3301.9252 without restraints) Performing minimization step: 3747. Total energy = 3303.9218 kcal/mol (3301.8241 without restraints) Performing minimization step: 3748. Total energy = 3303.8202 kcal/mol (3301.7230 without restraints) Performing minimization step: 3749. Total energy = 3303.7189 kcal/mol (3301.6224 without restraints) Performing minimization step: 3750. Total energy = 3303.6176 kcal/mol (3301.5213 without restraints) Performing minimization step: 3751. Total energy = 3303.5160 kcal/mol (3301.4202 without restraints) Performing minimization step: 3752. Total energy = 3303.4141 kcal/mol (3301.3190 without restraints) Performing minimization step: 3753. Total energy = 3303.3128 kcal/mol (3301.2182 without restraints) Performing minimization step: 3754. Total energy = 3303.2113 kcal/mol (3301.1171 without restraints) Performing minimization step: 3755. Total energy = 3303.1101 kcal/mol (3301.0165 without restraints) Performing minimization step: 3756. Total energy = 3303.0087 kcal/mol (3300.9157 without restraints) Performing minimization step: 3757. Total energy = 3302.9076 kcal/mol (3300.8150 without restraints) Performing minimization step: 3758. Total energy = 3302.8058 kcal/mol (3300.7138 without restraints) Performing minimization step: 3759. Total energy = 3302.7044 kcal/mol (3300.6128 without restraints) Performing minimization step: 3760. Total energy = 3302.6033 kcal/mol (3300.5122 without restraints) Performing minimization step: 3761. Total energy = 3302.5024 kcal/mol (3300.4119 without restraints) Performing minimization step: 3762. Total energy = 3302.4011 kcal/mol (3300.3111 without restraints) Performing minimization step: 3763. Total energy = 3302.3001 kcal/mol (3300.2106 without restraints) Performing minimization step: 3764. Total energy = 3302.1992 kcal/mol (3300.1102 without restraints) Performing minimization step: 3765. Total energy = 3302.0983 kcal/mol (3300.0099 without restraints) Performing minimization step: 3766. Total energy = 3301.9973 kcal/mol (3299.9093 without restraints) Performing minimization step: 3767. Total energy = 3301.8964 kcal/mol (3299.8090 without restraints) Performing minimization step: 3768. Total energy = 3301.7951 kcal/mol (3299.7082 without restraints) Performing minimization step: 3769. Total energy = 3301.6943 kcal/mol (3299.6078 without restraints) Performing minimization step: 3770. Total energy = 3301.5935 kcal/mol (3299.5077 without restraints) Performing minimization step: 3771. Total energy = 3301.4929 kcal/mol (3299.4074 without restraints) Performing minimization step: 3772. Total energy = 3301.3919 kcal/mol (3299.3069 without restraints) Performing minimization step: 3773. Total energy = 3301.2909 kcal/mol (3299.2063 without restraints) Performing minimization step: 3774. Total energy = 3301.1897 kcal/mol (3299.1059 without restraints) Performing minimization step: 3775. Total energy = 3301.0892 kcal/mol (3299.0057 without restraints) Performing minimization step: 3776. Total energy = 3300.9884 kcal/mol (3298.9054 without restraints) Performing minimization step: 3777. Total energy = 3300.8878 kcal/mol (3298.8053 without restraints) Performing minimization step: 3778. Total energy = 3300.7873 kcal/mol (3298.7053 without restraints) Performing minimization step: 3779. Total energy = 3300.6872 kcal/mol (3298.6057 without restraints) Performing minimization step: 3780. Total energy = 3300.5867 kcal/mol (3298.5057 without restraints) Performing minimization step: 3781. Total energy = 3300.4866 kcal/mol (3298.4062 without restraints) Performing minimization step: 3782. Total energy = 3300.3864 kcal/mol (3298.3064 without restraints) Performing minimization step: 3783. Total energy = 3300.2858 kcal/mol (3298.2063 without restraints) Performing minimization step: 3784. Total energy = 3300.1851 kcal/mol (3298.1062 without restraints) Performing minimization step: 3785. Total energy = 3300.0848 kcal/mol (3298.0064 without restraints) Performing minimization step: 3786. Total energy = 3299.9848 kcal/mol (3297.9070 without restraints) Performing minimization step: 3787. Total energy = 3299.8843 kcal/mol (3297.8068 without restraints) Performing minimization step: 3788. Total energy = 3299.7844 kcal/mol (3297.7074 without restraints) Performing minimization step: 3789. Total energy = 3299.6837 kcal/mol (3297.6072 without restraints) Performing minimization step: 3790. Total energy = 3299.5830 kcal/mol (3297.5070 without restraints) Performing minimization step: 3791. Total energy = 3299.4825 kcal/mol (3297.4071 without restraints) Performing minimization step: 3792. Total energy = 3299.3824 kcal/mol (3297.3073 without restraints) Performing minimization step: 3793. Total energy = 3299.2826 kcal/mol (3297.2081 without restraints) Performing minimization step: 3794. Total energy = 3299.1823 kcal/mol (3297.1084 without restraints) Performing minimization step: 3795. Total energy = 3299.0822 kcal/mol (3297.0087 without restraints) Performing minimization step: 3796. Total energy = 3298.9819 kcal/mol (3296.9089 without restraints) Performing minimization step: 3797. Total energy = 3298.8817 kcal/mol (3296.8093 without restraints) Performing minimization step: 3798. Total energy = 3298.7819 kcal/mol (3296.7099 without restraints) Performing minimization step: 3799. Total energy = 3298.6815 kcal/mol (3296.6099 without restraints) Performing minimization step: 3800. Total energy = 3298.5813 kcal/mol (3296.5102 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 3298.4812 kcal/mol (3296.4107 without restraints) Performing minimization step: 3802. Total energy = 3298.3812 kcal/mol (3296.3112 without restraints) Performing minimization step: 3803. Total energy = 3298.2810 kcal/mol (3296.2114 without restraints) Performing minimization step: 3804. Total energy = 3298.1811 kcal/mol (3296.1120 without restraints) Performing minimization step: 3805. Total energy = 3298.0812 kcal/mol (3296.0126 without restraints) Performing minimization step: 3806. Total energy = 3297.9815 kcal/mol (3295.9134 without restraints) Performing minimization step: 3807. Total energy = 3297.8815 kcal/mol (3295.8138 without restraints) Performing minimization step: 3808. Total energy = 3297.7813 kcal/mol (3295.7142 without restraints) Performing minimization step: 3809. Total energy = 3297.6813 kcal/mol (3295.6146 without restraints) Performing minimization step: 3810. Total energy = 3297.5815 kcal/mol (3295.5153 without restraints) Performing minimization step: 3811. Total energy = 3297.4813 kcal/mol (3295.4155 without restraints) Performing minimization step: 3812. Total energy = 3297.3812 kcal/mol (3295.3160 without restraints) Performing minimization step: 3813. Total energy = 3297.2812 kcal/mol (3295.2165 without restraints) Performing minimization step: 3814. Total energy = 3297.1815 kcal/mol (3295.1172 without restraints) Performing minimization step: 3815. Total energy = 3297.0822 kcal/mol (3295.0185 without restraints) Performing minimization step: 3816. Total energy = 3296.9823 kcal/mol (3294.9190 without restraints) Performing minimization step: 3817. Total energy = 3296.8826 kcal/mol (3294.8198 without restraints) Performing minimization step: 3818. Total energy = 3296.7827 kcal/mol (3294.7204 without restraints) Performing minimization step: 3819. Total energy = 3296.6830 kcal/mol (3294.6212 without restraints) Performing minimization step: 3820. Total energy = 3296.5834 kcal/mol (3294.5221 without restraints) Performing minimization step: 3821. Total energy = 3296.4837 kcal/mol (3294.4228 without restraints) Performing minimization step: 3822. Total energy = 3296.3837 kcal/mol (3294.3234 without restraints) Performing minimization step: 3823. Total energy = 3296.2841 kcal/mol (3294.2241 without restraints) Performing minimization step: 3824. Total energy = 3296.1845 kcal/mol (3294.1251 without restraints) Performing minimization step: 3825. Total energy = 3296.0852 kcal/mol (3294.0263 without restraints) Performing minimization step: 3826. Total energy = 3295.9857 kcal/mol (3293.9273 without restraints) Performing minimization step: 3827. Total energy = 3295.8864 kcal/mol (3293.8285 without restraints) Performing minimization step: 3828. Total energy = 3295.7872 kcal/mol (3293.7297 without restraints) Performing minimization step: 3829. Total energy = 3295.6882 kcal/mol (3293.6311 without restraints) Performing minimization step: 3830. Total energy = 3295.5887 kcal/mol (3293.5322 without restraints) Performing minimization step: 3831. Total energy = 3295.4892 kcal/mol (3293.4331 without restraints) Performing minimization step: 3832. Total energy = 3295.3902 kcal/mol (3293.3348 without restraints) Performing minimization step: 3833. Total energy = 3295.2909 kcal/mol (3293.2358 without restraints) Performing minimization step: 3834. Total energy = 3295.1917 kcal/mol (3293.1371 without restraints) Performing minimization step: 3835. Total energy = 3295.0924 kcal/mol (3293.0382 without restraints) Performing minimization step: 3836. Total energy = 3294.9926 kcal/mol (3292.9390 without restraints) Performing minimization step: 3837. Total energy = 3294.8932 kcal/mol (3292.8399 without restraints) Performing minimization step: 3838. Total energy = 3294.7938 kcal/mol (3292.7411 without restraints) Performing minimization step: 3839. Total energy = 3294.6948 kcal/mol (3292.6426 without restraints) Performing minimization step: 3840. Total energy = 3294.5957 kcal/mol (3292.5439 without restraints) Performing minimization step: 3841. Total energy = 3294.4965 kcal/mol (3292.4451 without restraints) Performing minimization step: 3842. Total energy = 3294.3979 kcal/mol (3292.3470 without restraints) Performing minimization step: 3843. Total energy = 3294.2985 kcal/mol (3292.2481 without restraints) Performing minimization step: 3844. Total energy = 3294.1995 kcal/mol (3292.1496 without restraints) Performing minimization step: 3845. Total energy = 3294.1003 kcal/mol (3292.0509 without restraints) Performing minimization step: 3846. Total energy = 3294.0012 kcal/mol (3291.9522 without restraints) Performing minimization step: 3847. Total energy = 3293.9026 kcal/mol (3291.8541 without restraints) Performing minimization step: 3848. Total energy = 3293.8038 kcal/mol (3291.7557 without restraints) Performing minimization step: 3849. Total energy = 3293.7048 kcal/mol (3291.6572 without restraints) Performing minimization step: 3850. Total energy = 3293.6061 kcal/mol (3291.5590 without restraints) Performing minimization step: 3851. Total energy = 3293.5069 kcal/mol (3291.4603 without restraints) Performing minimization step: 3852. Total energy = 3293.4079 kcal/mol (3291.3617 without restraints) Performing minimization step: 3853. Total energy = 3293.3090 kcal/mol (3291.2633 without restraints) Performing minimization step: 3854. Total energy = 3293.2099 kcal/mol (3291.1647 without restraints) Performing minimization step: 3855. Total energy = 3293.1111 kcal/mol (3291.0664 without restraints) Performing minimization step: 3856. Total energy = 3293.0121 kcal/mol (3290.9677 without restraints) Performing minimization step: 3857. Total energy = 3292.9129 kcal/mol (3290.8690 without restraints) Performing minimization step: 3858. Total energy = 3292.8139 kcal/mol (3290.7706 without restraints) Performing minimization step: 3859. Total energy = 3292.7149 kcal/mol (3290.6720 without restraints) Performing minimization step: 3860. Total energy = 3292.6160 kcal/mol (3290.5735 without restraints) Performing minimization step: 3861. Total energy = 3292.5176 kcal/mol (3290.4756 without restraints) Performing minimization step: 3862. Total energy = 3292.4187 kcal/mol (3290.3772 without restraints) Performing minimization step: 3863. Total energy = 3292.3199 kcal/mol (3290.2788 without restraints) Performing minimization step: 3864. Total energy = 3292.2210 kcal/mol (3290.1804 without restraints) Performing minimization step: 3865. Total energy = 3292.1223 kcal/mol (3290.0823 without restraints) Performing minimization step: 3866. Total energy = 3292.0233 kcal/mol (3289.9837 without restraints) Performing minimization step: 3867. Total energy = 3291.9247 kcal/mol (3289.8854 without restraints) Performing minimization step: 3868. Total energy = 3291.8258 kcal/mol (3289.7870 without restraints) Performing minimization step: 3869. Total energy = 3291.7274 kcal/mol (3289.6892 without restraints) Performing minimization step: 3870. Total energy = 3291.6287 kcal/mol (3289.5909 without restraints) Performing minimization step: 3871. Total energy = 3291.5300 kcal/mol (3289.4926 without restraints) Performing minimization step: 3872. Total energy = 3291.4314 kcal/mol (3289.3945 without restraints) Performing minimization step: 3873. Total energy = 3291.3328 kcal/mol (3289.2965 without restraints) Performing minimization step: 3874. Total energy = 3291.2344 kcal/mol (3289.1985 without restraints) Performing minimization step: 3875. Total energy = 3291.1356 kcal/mol (3289.1001 without restraints) Performing minimization step: 3876. Total energy = 3291.0369 kcal/mol (3289.0019 without restraints) Performing minimization step: 3877. Total energy = 3290.9385 kcal/mol (3288.9039 without restraints) Performing minimization step: 3878. Total energy = 3290.8400 kcal/mol (3288.8059 without restraints) Performing minimization step: 3879. Total energy = 3290.7414 kcal/mol (3288.7076 without restraints) Performing minimization step: 3880. Total energy = 3290.6427 kcal/mol (3288.6094 without restraints) Performing minimization step: 3881. Total energy = 3290.5438 kcal/mol (3288.5110 without restraints) Performing minimization step: 3882. Total energy = 3290.4450 kcal/mol (3288.4128 without restraints) Performing minimization step: 3883. Total energy = 3290.3468 kcal/mol (3288.3149 without restraints) Performing minimization step: 3884. Total energy = 3290.2482 kcal/mol (3288.2168 without restraints) Performing minimization step: 3885. Total energy = 3290.1500 kcal/mol (3288.1190 without restraints) Performing minimization step: 3886. Total energy = 3290.0515 kcal/mol (3288.0209 without restraints) Performing minimization step: 3887. Total energy = 3289.9528 kcal/mol (3287.9227 without restraints) Performing minimization step: 3888. Total energy = 3289.8543 kcal/mol (3287.8246 without restraints) Performing minimization step: 3889. Total energy = 3289.7559 kcal/mol (3287.7267 without restraints) Performing minimization step: 3890. Total energy = 3289.6575 kcal/mol (3287.6288 without restraints) Performing minimization step: 3891. Total energy = 3289.5591 kcal/mol (3287.5308 without restraints) Performing minimization step: 3892. Total energy = 3289.4613 kcal/mol (3287.4335 without restraints) Performing minimization step: 3893. Total energy = 3289.3628 kcal/mol (3287.3354 without restraints) Performing minimization step: 3894. Total energy = 3289.2644 kcal/mol (3287.2374 without restraints) Performing minimization step: 3895. Total energy = 3289.1659 kcal/mol (3287.1394 without restraints) Performing minimization step: 3896. Total energy = 3289.0679 kcal/mol (3287.0419 without restraints) Performing minimization step: 3897. Total energy = 3288.9696 kcal/mol (3286.9440 without restraints) Performing minimization step: 3898. Total energy = 3288.8710 kcal/mol (3286.8458 without restraints) Performing minimization step: 3899. Total energy = 3288.7724 kcal/mol (3286.7477 without restraints) Performing minimization step: 3900. Total energy = 3288.6739 kcal/mol (3286.6495 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 3288.5752 kcal/mol (3286.5514 without restraints) Performing minimization step: 3902. Total energy = 3288.4770 kcal/mol (3286.4537 without restraints) Performing minimization step: 3903. Total energy = 3288.3787 kcal/mol (3286.3557 without restraints) Performing minimization step: 3904. Total energy = 3288.2803 kcal/mol (3286.2578 without restraints) Performing minimization step: 3905. Total energy = 3288.1819 kcal/mol (3286.1599 without restraints) Performing minimization step: 3906. Total energy = 3288.0837 kcal/mol (3286.0620 without restraints) Performing minimization step: 3907. Total energy = 3287.9853 kcal/mol (3285.9642 without restraints) Performing minimization step: 3908. Total energy = 3287.8870 kcal/mol (3285.8663 without restraints) Performing minimization step: 3909. Total energy = 3287.7885 kcal/mol (3285.7683 without restraints) Performing minimization step: 3910. Total energy = 3287.6907 kcal/mol (3285.6708 without restraints) Performing minimization step: 3911. Total energy = 3287.5921 kcal/mol (3285.5727 without restraints) Performing minimization step: 3912. Total energy = 3287.4932 kcal/mol (3285.4743 without restraints) Performing minimization step: 3913. Total energy = 3287.3952 kcal/mol (3285.3768 without restraints) Performing minimization step: 3914. Total energy = 3287.2970 kcal/mol (3285.2789 without restraints) Performing minimization step: 3915. Total energy = 3287.1988 kcal/mol (3285.1811 without restraints) Performing minimization step: 3916. Total energy = 3287.1003 kcal/mol (3285.0831 without restraints) Performing minimization step: 3917. Total energy = 3287.0021 kcal/mol (3284.9854 without restraints) Performing minimization step: 3918. Total energy = 3286.9039 kcal/mol (3284.8875 without restraints) Performing minimization step: 3919. Total energy = 3286.8058 kcal/mol (3284.7899 without restraints) Performing minimization step: 3920. Total energy = 3286.7076 kcal/mol (3284.6921 without restraints) Performing minimization step: 3921. Total energy = 3286.6094 kcal/mol (3284.5944 without restraints) Performing minimization step: 3922. Total energy = 3286.5113 kcal/mol (3284.4967 without restraints) Performing minimization step: 3923. Total energy = 3286.4131 kcal/mol (3284.3989 without restraints) Performing minimization step: 3924. Total energy = 3286.3149 kcal/mol (3284.3011 without restraints) Performing minimization step: 3925. Total energy = 3286.2161 kcal/mol (3284.2028 without restraints) Performing minimization step: 3926. Total energy = 3286.1178 kcal/mol (3284.1050 without restraints) Performing minimization step: 3927. Total energy = 3286.0197 kcal/mol (3284.0074 without restraints) Performing minimization step: 3928. Total energy = 3285.9214 kcal/mol (3283.9095 without restraints) Performing minimization step: 3929. Total energy = 3285.8233 kcal/mol (3283.8117 without restraints) Performing minimization step: 3930. Total energy = 3285.7253 kcal/mol (3283.7142 without restraints) Performing minimization step: 3931. Total energy = 3285.6271 kcal/mol (3283.6166 without restraints) Performing minimization step: 3932. Total energy = 3285.5294 kcal/mol (3283.5191 without restraints) Performing minimization step: 3933. Total energy = 3285.4315 kcal/mol (3283.4216 without restraints) Performing minimization step: 3934. Total energy = 3285.3335 kcal/mol (3283.3241 without restraints) Performing minimization step: 3935. Total energy = 3285.2353 kcal/mol (3283.2263 without restraints) Performing minimization step: 3936. Total energy = 3285.1372 kcal/mol (3283.1286 without restraints) Performing minimization step: 3937. Total energy = 3285.0391 kcal/mol (3283.0310 without restraints) Performing minimization step: 3938. Total energy = 3284.9410 kcal/mol (3282.9333 without restraints) Performing minimization step: 3939. Total energy = 3284.8432 kcal/mol (3282.8361 without restraints) Performing minimization step: 3940. Total energy = 3284.7452 kcal/mol (3282.7385 without restraints) Performing minimization step: 3941. Total energy = 3284.6469 kcal/mol (3282.6404 without restraints) Performing minimization step: 3942. Total energy = 3284.5488 kcal/mol (3282.5429 without restraints) Performing minimization step: 3943. Total energy = 3284.4508 kcal/mol (3282.4453 without restraints) Performing minimization step: 3944. Total energy = 3284.3527 kcal/mol (3282.3476 without restraints) Performing minimization step: 3945. Total energy = 3284.2544 kcal/mol (3282.2497 without restraints) Performing minimization step: 3946. Total energy = 3284.1560 kcal/mol (3282.1518 without restraints) Performing minimization step: 3947. Total energy = 3284.0576 kcal/mol (3282.0537 without restraints) Performing minimization step: 3948. Total energy = 3283.9592 kcal/mol (3281.9558 without restraints) Performing minimization step: 3949. Total energy = 3283.8610 kcal/mol (3281.8580 without restraints) Performing minimization step: 3950. Total energy = 3283.7631 kcal/mol (3281.7605 without restraints) Performing minimization step: 3951. Total energy = 3283.6650 kcal/mol (3281.6629 without restraints) Performing minimization step: 3952. Total energy = 3283.5671 kcal/mol (3281.5655 without restraints) Performing minimization step: 3953. Total energy = 3283.4694 kcal/mol (3281.4680 without restraints) Performing minimization step: 3954. Total energy = 3283.3712 kcal/mol (3281.3702 without restraints) Performing minimization step: 3955. Total energy = 3283.2732 kcal/mol (3281.2727 without restraints) Performing minimization step: 3956. Total energy = 3283.1749 kcal/mol (3281.1748 without restraints) Performing minimization step: 3957. Total energy = 3283.0769 kcal/mol (3281.0773 without restraints) Performing minimization step: 3958. Total energy = 3282.9786 kcal/mol (3280.9793 without restraints) Performing minimization step: 3959. Total energy = 3282.8805 kcal/mol (3280.8817 without restraints) Performing minimization step: 3960. Total energy = 3282.7819 kcal/mol (3280.7835 without restraints) Performing minimization step: 3961. Total energy = 3282.6838 kcal/mol (3280.6858 without restraints) Performing minimization step: 3962. Total energy = 3282.5860 kcal/mol (3280.5884 without restraints) Performing minimization step: 3963. Total energy = 3282.4878 kcal/mol (3280.4906 without restraints) Performing minimization step: 3964. Total energy = 3282.3894 kcal/mol (3280.3927 without restraints) Performing minimization step: 3965. Total energy = 3282.2912 kcal/mol (3280.2949 without restraints) Performing minimization step: 3966. Total energy = 3282.1931 kcal/mol (3280.1972 without restraints) Performing minimization step: 3967. Total energy = 3282.0952 kcal/mol (3280.0998 without restraints) Performing minimization step: 3968. Total energy = 3281.9974 kcal/mol (3280.0023 without restraints) Performing minimization step: 3969. Total energy = 3281.8993 kcal/mol (3279.9047 without restraints) Performing minimization step: 3970. Total energy = 3281.8013 kcal/mol (3279.8071 without restraints) Performing minimization step: 3971. Total energy = 3281.7035 kcal/mol (3279.7097 without restraints) Performing minimization step: 3972. Total energy = 3281.6054 kcal/mol (3279.6120 without restraints) Performing minimization step: 3973. Total energy = 3281.5074 kcal/mol (3279.5143 without restraints) Performing minimization step: 3974. Total energy = 3281.4089 kcal/mol (3279.4163 without restraints) Performing minimization step: 3975. Total energy = 3281.3108 kcal/mol (3279.3185 without restraints) Performing minimization step: 3976. Total energy = 3281.2127 kcal/mol (3279.2209 without restraints) Performing minimization step: 3977. Total energy = 3281.1144 kcal/mol (3279.1230 without restraints) Performing minimization step: 3978. Total energy = 3281.0163 kcal/mol (3279.0254 without restraints) Performing minimization step: 3979. Total energy = 3280.9181 kcal/mol (3278.9275 without restraints) Performing minimization step: 3980. Total energy = 3280.8202 kcal/mol (3278.8301 without restraints) Performing minimization step: 3981. Total energy = 3280.7221 kcal/mol (3278.7324 without restraints) Performing minimization step: 3982. Total energy = 3280.6240 kcal/mol (3278.6347 without restraints) Performing minimization step: 3983. Total energy = 3280.5259 kcal/mol (3278.5370 without restraints) Performing minimization step: 3984. Total energy = 3280.4274 kcal/mol (3278.4389 without restraints) Performing minimization step: 3985. Total energy = 3280.3292 kcal/mol (3278.3410 without restraints) Performing minimization step: 3986. Total energy = 3280.2308 kcal/mol (3278.2431 without restraints) Performing minimization step: 3987. Total energy = 3280.1330 kcal/mol (3278.1457 without restraints) Performing minimization step: 3988. Total energy = 3280.0350 kcal/mol (3278.0480 without restraints) Performing minimization step: 3989. Total energy = 3279.9369 kcal/mol (3277.9504 without restraints) Performing minimization step: 3990. Total energy = 3279.8384 kcal/mol (3277.8524 without restraints) Performing minimization step: 3991. Total energy = 3279.7407 kcal/mol (3277.7550 without restraints) Performing minimization step: 3992. Total energy = 3279.6425 kcal/mol (3277.6573 without restraints) Performing minimization step: 3993. Total energy = 3279.5445 kcal/mol (3277.5597 without restraints) Performing minimization step: 3994. Total energy = 3279.4464 kcal/mol (3277.4619 without restraints) Performing minimization step: 3995. Total energy = 3279.3481 kcal/mol (3277.3640 without restraints) Performing minimization step: 3996. Total energy = 3279.2502 kcal/mol (3277.2665 without restraints) Performing minimization step: 3997. Total energy = 3279.1521 kcal/mol (3277.1688 without restraints) Performing minimization step: 3998. Total energy = 3279.0540 kcal/mol (3277.0711 without restraints) Performing minimization step: 3999. Total energy = 3278.9559 kcal/mol (3276.9733 without restraints) Performing minimization step: 4000. Total energy = 3278.8576 kcal/mol (3276.8756 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 3278.7595 kcal/mol (3276.7779 without restraints) Performing minimization step: 4002. Total energy = 3278.6614 kcal/mol (3276.6801 without restraints) Performing minimization step: 4003. Total energy = 3278.5632 kcal/mol (3276.5823 without restraints) Performing minimization step: 4004. Total energy = 3278.4653 kcal/mol (3276.4849 without restraints) Performing minimization step: 4005. Total energy = 3278.3669 kcal/mol (3276.3869 without restraints) Performing minimization step: 4006. Total energy = 3278.2686 kcal/mol (3276.2890 without restraints) Performing minimization step: 4007. Total energy = 3278.1705 kcal/mol (3276.1913 without restraints) Performing minimization step: 4008. Total energy = 3278.0723 kcal/mol (3276.0935 without restraints) Performing minimization step: 4009. Total energy = 3277.9740 kcal/mol (3275.9955 without restraints) Performing minimization step: 4010. Total energy = 3277.8758 kcal/mol (3275.8978 without restraints) Performing minimization step: 4011. Total energy = 3277.7776 kcal/mol (3275.7998 without restraints) Performing minimization step: 4012. Total energy = 3277.6792 kcal/mol (3275.7020 without restraints) Performing minimization step: 4013. Total energy = 3277.5811 kcal/mol (3275.6042 without restraints) Performing minimization step: 4014. Total energy = 3277.4827 kcal/mol (3275.5062 without restraints) Performing minimization step: 4015. Total energy = 3277.3843 kcal/mol (3275.4082 without restraints) Performing minimization step: 4016. Total energy = 3277.2862 kcal/mol (3275.3104 without restraints) Performing minimization step: 4017. Total energy = 3277.1877 kcal/mol (3275.2124 without restraints) Performing minimization step: 4018. Total energy = 3277.0894 kcal/mol (3275.1144 without restraints) Performing minimization step: 4019. Total energy = 3276.9911 kcal/mol (3275.0165 without restraints) Performing minimization step: 4020. Total energy = 3276.8929 kcal/mol (3274.9187 without restraints) Performing minimization step: 4021. Total energy = 3276.7949 kcal/mol (3274.8211 without restraints) Performing minimization step: 4022. Total energy = 3276.6965 kcal/mol (3274.7230 without restraints) Performing minimization step: 4023. Total energy = 3276.5983 kcal/mol (3274.6253 without restraints) Performing minimization step: 4024. Total energy = 3276.5002 kcal/mol (3274.5275 without restraints) Performing minimization step: 4025. Total energy = 3276.4018 kcal/mol (3274.4294 without restraints) Performing minimization step: 4026. Total energy = 3276.3033 kcal/mol (3274.3313 without restraints) Performing minimization step: 4027. Total energy = 3276.2049 kcal/mol (3274.2334 without restraints) Performing minimization step: 4028. Total energy = 3276.1066 kcal/mol (3274.1356 without restraints) Performing minimization step: 4029. Total energy = 3276.0081 kcal/mol (3274.0374 without restraints) Performing minimization step: 4030. Total energy = 3275.9097 kcal/mol (3273.9393 without restraints) Performing minimization step: 4031. Total energy = 3275.8119 kcal/mol (3273.8420 without restraints) Performing minimization step: 4032. Total energy = 3275.7134 kcal/mol (3273.7439 without restraints) Performing minimization step: 4033. Total energy = 3275.6150 kcal/mol (3273.6459 without restraints) Performing minimization step: 4034. Total energy = 3275.5167 kcal/mol (3273.5480 without restraints) Performing minimization step: 4035. Total energy = 3275.4187 kcal/mol (3273.4503 without restraints) Performing minimization step: 4036. Total energy = 3275.3206 kcal/mol (3273.3526 without restraints) Performing minimization step: 4037. Total energy = 3275.2222 kcal/mol (3273.2546 without restraints) Performing minimization step: 4038. Total energy = 3275.1239 kcal/mol (3273.1566 without restraints) Performing minimization step: 4039. Total energy = 3275.0254 kcal/mol (3273.0585 without restraints) Performing minimization step: 4040. Total energy = 3274.9271 kcal/mol (3272.9606 without restraints) Performing minimization step: 4041. Total energy = 3274.8288 kcal/mol (3272.8627 without restraints) Performing minimization step: 4042. Total energy = 3274.7304 kcal/mol (3272.7647 without restraints) Performing minimization step: 4043. Total energy = 3274.6322 kcal/mol (3272.6668 without restraints) Performing minimization step: 4044. Total energy = 3274.5336 kcal/mol (3272.5687 without restraints) Performing minimization step: 4045. Total energy = 3274.4352 kcal/mol (3272.4707 without restraints) Performing minimization step: 4046. Total energy = 3274.3366 kcal/mol (3272.3723 without restraints) Performing minimization step: 4047. Total energy = 3274.2382 kcal/mol (3272.2745 without restraints) Performing minimization step: 4048. Total energy = 3274.1398 kcal/mol (3272.1764 without restraints) Performing minimization step: 4049. Total energy = 3274.0416 kcal/mol (3272.0786 without restraints) Performing minimization step: 4050. Total energy = 3273.9430 kcal/mol (3271.9803 without restraints) Performing minimization step: 4051. Total energy = 3273.8446 kcal/mol (3271.8824 without restraints) Performing minimization step: 4052. Total energy = 3273.7463 kcal/mol (3271.7844 without restraints) Performing minimization step: 4053. Total energy = 3273.6478 kcal/mol (3271.6863 without restraints) Performing minimization step: 4054. Total energy = 3273.5493 kcal/mol (3271.5882 without restraints) Performing minimization step: 4055. Total energy = 3273.4506 kcal/mol (3271.4898 without restraints) Performing minimization step: 4056. Total energy = 3273.3521 kcal/mol (3271.3917 without restraints) Performing minimization step: 4057. Total energy = 3273.2534 kcal/mol (3271.2934 without restraints) Performing minimization step: 4058. Total energy = 3273.1551 kcal/mol (3271.1954 without restraints) Performing minimization step: 4059. Total energy = 3273.0565 kcal/mol (3271.0972 without restraints) Performing minimization step: 4060. Total energy = 3272.9580 kcal/mol (3270.9991 without restraints) Performing minimization step: 4061. Total energy = 3272.8598 kcal/mol (3270.9014 without restraints) Performing minimization step: 4062. Total energy = 3272.7614 kcal/mol (3270.8033 without restraints) Performing minimization step: 4063. Total energy = 3272.6629 kcal/mol (3270.7051 without restraints) Performing minimization step: 4064. Total energy = 3272.5640 kcal/mol (3270.6062 without restraints) Performing minimization step: 4065. Total energy = 3272.4653 kcal/mol (3270.5084 without restraints) Performing minimization step: 4066. Total energy = 3272.3665 kcal/mol (3270.4098 without restraints) Performing minimization step: 4067. Total energy = 3272.2678 kcal/mol (3270.3114 without restraints) Performing minimization step: 4068. Total energy = 3272.1691 kcal/mol (3270.2131 without restraints) Performing minimization step: 4069. Total energy = 3272.0705 kcal/mol (3270.1150 without restraints) Performing minimization step: 4070. Total energy = 3271.9721 kcal/mol (3270.0169 without restraints) Performing minimization step: 4071. Total energy = 3271.8735 kcal/mol (3269.9187 without restraints) Performing minimization step: 4072. Total energy = 3271.7749 kcal/mol (3269.8204 without restraints) Performing minimization step: 4073. Total energy = 3271.6764 kcal/mol (3269.7224 without restraints) Performing minimization step: 4074. Total energy = 3271.5779 kcal/mol (3269.6242 without restraints) Performing minimization step: 4075. Total energy = 3271.4796 kcal/mol (3269.5263 without restraints) Performing minimization step: 4076. Total energy = 3271.3812 kcal/mol (3269.4282 without restraints) Performing minimization step: 4077. Total energy = 3271.2825 kcal/mol (3269.3300 without restraints) Performing minimization step: 4078. Total energy = 3271.1836 kcal/mol (3269.2313 without restraints) Performing minimization step: 4079. Total energy = 3271.0848 kcal/mol (3269.1329 without restraints) Performing minimization step: 4080. Total energy = 3270.9860 kcal/mol (3269.0345 without restraints) Performing minimization step: 4081. Total energy = 3270.8875 kcal/mol (3268.9363 without restraints) Performing minimization step: 4082. Total energy = 3270.7887 kcal/mol (3268.8379 without restraints) Performing minimization step: 4083. Total energy = 3270.6900 kcal/mol (3268.7395 without restraints) Performing minimization step: 4084. Total energy = 3270.5913 kcal/mol (3268.6413 without restraints) Performing minimization step: 4085. Total energy = 3270.4926 kcal/mol (3268.5429 without restraints) Performing minimization step: 4086. Total energy = 3270.3931 kcal/mol (3268.4438 without restraints) Performing minimization step: 4087. Total energy = 3270.2945 kcal/mol (3268.3456 without restraints) Performing minimization step: 4088. Total energy = 3270.1959 kcal/mol (3268.2475 without restraints) Performing minimization step: 4089. Total energy = 3270.0971 kcal/mol (3268.1489 without restraints) Performing minimization step: 4090. Total energy = 3269.9983 kcal/mol (3268.0504 without restraints) Performing minimization step: 4091. Total energy = 3269.8996 kcal/mol (3267.9522 without restraints) Performing minimization step: 4092. Total energy = 3269.8009 kcal/mol (3267.8538 without restraints) Performing minimization step: 4093. Total energy = 3269.7021 kcal/mol (3267.7553 without restraints) Performing minimization step: 4094. Total energy = 3269.6033 kcal/mol (3267.6569 without restraints) Performing minimization step: 4095. Total energy = 3269.5043 kcal/mol (3267.5582 without restraints) Performing minimization step: 4096. Total energy = 3269.4052 kcal/mol (3267.4594 without restraints) Performing minimization step: 4097. Total energy = 3269.3064 kcal/mol (3267.3611 without restraints) Performing minimization step: 4098. Total energy = 3269.2080 kcal/mol (3267.2629 without restraints) Performing minimization step: 4099. Total energy = 3269.1090 kcal/mol (3267.1643 without restraints) Performing minimization step: 4100. Total energy = 3269.0097 kcal/mol (3267.0654 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 3268.9108 kcal/mol (3266.9668 without restraints) Performing minimization step: 4102. Total energy = 3268.8116 kcal/mol (3266.8680 without restraints) Performing minimization step: 4103. Total energy = 3268.7127 kcal/mol (3266.7694 without restraints) Performing minimization step: 4104. Total energy = 3268.6135 kcal/mol (3266.6706 without restraints) Performing minimization step: 4105. Total energy = 3268.5147 kcal/mol (3266.5722 without restraints) Performing minimization step: 4106. Total energy = 3268.4155 kcal/mol (3266.4733 without restraints) Performing minimization step: 4107. Total energy = 3268.3169 kcal/mol (3266.3751 without restraints) Performing minimization step: 4108. Total energy = 3268.2183 kcal/mol (3266.2768 without restraints) Performing minimization step: 4109. Total energy = 3268.1192 kcal/mol (3266.1781 without restraints) Performing minimization step: 4110. Total energy = 3268.0201 kcal/mol (3266.0793 without restraints) Performing minimization step: 4111. Total energy = 3267.9209 kcal/mol (3265.9805 without restraints) Performing minimization step: 4112. Total energy = 3267.8221 kcal/mol (3265.8820 without restraints) Performing minimization step: 4113. Total energy = 3267.7230 kcal/mol (3265.7833 without restraints) Performing minimization step: 4114. Total energy = 3267.6241 kcal/mol (3265.6848 without restraints) Performing minimization step: 4115. Total energy = 3267.5252 kcal/mol (3265.5862 without restraints) Performing minimization step: 4116. Total energy = 3267.4264 kcal/mol (3265.4878 without restraints) Performing minimization step: 4117. Total energy = 3267.3274 kcal/mol (3265.3890 without restraints) Performing minimization step: 4118. Total energy = 3267.2284 kcal/mol (3265.2905 without restraints) Performing minimization step: 4119. Total energy = 3267.1292 kcal/mol (3265.1915 without restraints) Performing minimization step: 4120. Total energy = 3267.0297 kcal/mol (3265.0923 without restraints) Performing minimization step: 4121. Total energy = 3266.9303 kcal/mol (3264.9934 without restraints) Performing minimization step: 4122. Total energy = 3266.8311 kcal/mol (3264.8946 without restraints) Performing minimization step: 4123. Total energy = 3266.7321 kcal/mol (3264.7959 without restraints) Performing minimization step: 4124. Total energy = 3266.6328 kcal/mol (3264.6970 without restraints) Performing minimization step: 4125. Total energy = 3266.5337 kcal/mol (3264.5981 without restraints) Performing minimization step: 4126. Total energy = 3266.4345 kcal/mol (3264.4993 without restraints) Performing minimization step: 4127. Total energy = 3266.3352 kcal/mol (3264.4003 without restraints) Performing minimization step: 4128. Total energy = 3266.2361 kcal/mol (3264.3016 without restraints) Performing minimization step: 4129. Total energy = 3266.1368 kcal/mol (3264.2027 without restraints) Performing minimization step: 4130. Total energy = 3266.0378 kcal/mol (3264.1039 without restraints) Performing minimization step: 4131. Total energy = 3265.9385 kcal/mol (3264.0050 without restraints) Performing minimization step: 4132. Total energy = 3265.8392 kcal/mol (3263.9060 without restraints) Performing minimization step: 4133. Total energy = 3265.7401 kcal/mol (3263.8075 without restraints) Performing minimization step: 4134. Total energy = 3265.6410 kcal/mol (3263.7086 without restraints) Performing minimization step: 4135. Total energy = 3265.5422 kcal/mol (3263.6100 without restraints) Performing minimization step: 4136. Total energy = 3265.4427 kcal/mol (3263.5110 without restraints) Performing minimization step: 4137. Total energy = 3265.3435 kcal/mol (3263.4122 without restraints) Performing minimization step: 4138. Total energy = 3265.2440 kcal/mol (3263.3130 without restraints) Performing minimization step: 4139. Total energy = 3265.1449 kcal/mol (3263.2143 without restraints) Performing minimization step: 4140. Total energy = 3265.0456 kcal/mol (3263.1151 without restraints) Performing minimization step: 4141. Total energy = 3264.9463 kcal/mol (3263.0162 without restraints) Performing minimization step: 4142. Total energy = 3264.8470 kcal/mol (3262.9174 without restraints) Performing minimization step: 4143. Total energy = 3264.7477 kcal/mol (3262.8183 without restraints) Performing minimization step: 4144. Total energy = 3264.6482 kcal/mol (3262.7192 without restraints) Performing minimization step: 4145. Total energy = 3264.5488 kcal/mol (3262.6201 without restraints) Performing minimization step: 4146. Total energy = 3264.4496 kcal/mol (3262.5212 without restraints) Performing minimization step: 4147. Total energy = 3264.3501 kcal/mol (3262.4222 without restraints) Performing minimization step: 4148. Total energy = 3264.2508 kcal/mol (3262.3231 without restraints) Performing minimization step: 4149. Total energy = 3264.1512 kcal/mol (3262.2238 without restraints) Performing minimization step: 4150. Total energy = 3264.0520 kcal/mol (3262.1249 without restraints) Performing minimization step: 4151. Total energy = 3263.9525 kcal/mol (3262.0260 without restraints) Performing minimization step: 4152. Total energy = 3263.8532 kcal/mol (3261.9268 without restraints) Performing minimization step: 4153. Total energy = 3263.7537 kcal/mol (3261.8277 without restraints) Performing minimization step: 4154. Total energy = 3263.6540 kcal/mol (3261.7283 without restraints) Performing minimization step: 4155. Total energy = 3263.5546 kcal/mol (3261.6293 without restraints) Performing minimization step: 4156. Total energy = 3263.4552 kcal/mol (3261.5303 without restraints) Performing minimization step: 4157. Total energy = 3263.3558 kcal/mol (3261.4312 without restraints) Performing minimization step: 4158. Total energy = 3263.2563 kcal/mol (3261.3319 without restraints) Performing minimization step: 4159. Total energy = 3263.1566 kcal/mol (3261.2327 without restraints) Performing minimization step: 4160. Total energy = 3263.0573 kcal/mol (3261.1337 without restraints) Performing minimization step: 4161. Total energy = 3262.9578 kcal/mol (3261.0346 without restraints) Performing minimization step: 4162. Total energy = 3262.8583 kcal/mol (3260.9353 without restraints) Performing minimization step: 4163. Total energy = 3262.7583 kcal/mol (3260.8356 without restraints) Performing minimization step: 4164. Total energy = 3262.6589 kcal/mol (3260.7365 without restraints) Performing minimization step: 4165. Total energy = 3262.5592 kcal/mol (3260.6371 without restraints) Performing minimization step: 4166. Total energy = 3262.4595 kcal/mol (3260.5380 without restraints) Performing minimization step: 4167. Total energy = 3262.3600 kcal/mol (3260.4386 without restraints) Performing minimization step: 4168. Total energy = 3262.2606 kcal/mol (3260.3396 without restraints) Performing minimization step: 4169. Total energy = 3262.1610 kcal/mol (3260.2403 without restraints) Performing minimization step: 4170. Total energy = 3262.0614 kcal/mol (3260.1409 without restraints) Performing minimization step: 4171. Total energy = 3261.9619 kcal/mol (3260.0419 without restraints) Performing minimization step: 4172. Total energy = 3261.8622 kcal/mol (3259.9425 without restraints) Performing minimization step: 4173. Total energy = 3261.7623 kcal/mol (3259.8429 without restraints) Performing minimization step: 4174. Total energy = 3261.6626 kcal/mol (3259.7435 without restraints) Performing minimization step: 4175. Total energy = 3261.5630 kcal/mol (3259.6442 without restraints) Performing minimization step: 4176. Total energy = 3261.4635 kcal/mol (3259.5452 without restraints) Performing minimization step: 4177. Total energy = 3261.3639 kcal/mol (3259.4459 without restraints) Performing minimization step: 4178. Total energy = 3261.2642 kcal/mol (3259.3465 without restraints) Performing minimization step: 4179. Total energy = 3261.1643 kcal/mol (3259.2469 without restraints) Performing minimization step: 4180. Total energy = 3261.0646 kcal/mol (3259.1475 without restraints) Performing minimization step: 4181. Total energy = 3260.9648 kcal/mol (3259.0481 without restraints) Performing minimization step: 4182. Total energy = 3260.8650 kcal/mol (3258.9486 without restraints) Performing minimization step: 4183. Total energy = 3260.7651 kcal/mol (3258.8490 without restraints) Performing minimization step: 4184. Total energy = 3260.6651 kcal/mol (3258.7493 without restraints) Performing minimization step: 4185. Total energy = 3260.5654 kcal/mol (3258.6499 without restraints) Performing minimization step: 4186. Total energy = 3260.4647 kcal/mol (3258.5495 without restraints) Performing minimization step: 4187. Total energy = 3260.3646 kcal/mol (3258.4498 without restraints) Performing minimization step: 4188. Total energy = 3260.2648 kcal/mol (3258.3503 without restraints) Performing minimization step: 4189. Total energy = 3260.1650 kcal/mol (3258.2508 without restraints) Performing minimization step: 4190. Total energy = 3260.0656 kcal/mol (3258.1517 without restraints) Performing minimization step: 4191. Total energy = 3259.9658 kcal/mol (3258.0522 without restraints) Performing minimization step: 4192. Total energy = 3259.8661 kcal/mol (3257.9529 without restraints) Performing minimization step: 4193. Total energy = 3259.7663 kcal/mol (3257.8534 without restraints) Performing minimization step: 4194. Total energy = 3259.6666 kcal/mol (3257.7540 without restraints) Performing minimization step: 4195. Total energy = 3259.5666 kcal/mol (3257.6544 without restraints) Performing minimization step: 4196. Total energy = 3259.4667 kcal/mol (3257.5548 without restraints) Performing minimization step: 4197. Total energy = 3259.3668 kcal/mol (3257.4552 without restraints) Performing minimization step: 4198. Total energy = 3259.2674 kcal/mol (3257.3561 without restraints) Performing minimization step: 4199. Total energy = 3259.1672 kcal/mol (3257.2563 without restraints) Performing minimization step: 4200. Total energy = 3259.0674 kcal/mol (3257.1567 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 3258.9674 kcal/mol (3257.0571 without restraints) Performing minimization step: 4202. Total energy = 3258.8675 kcal/mol (3256.9575 without restraints) Performing minimization step: 4203. Total energy = 3258.7674 kcal/mol (3256.8580 without restraints) Performing minimization step: 4204. Total energy = 3258.6678 kcal/mol (3256.7585 without restraints) Performing minimization step: 4205. Total energy = 3258.5681 kcal/mol (3256.6591 without restraints) Performing minimization step: 4206. Total energy = 3258.4681 kcal/mol (3256.5592 without restraints) Performing minimization step: 4207. Total energy = 3258.3680 kcal/mol (3256.4596 without restraints) Performing minimization step: 4208. Total energy = 3258.2680 kcal/mol (3256.3599 without restraints) Performing minimization step: 4209. Total energy = 3258.1677 kcal/mol (3256.2600 without restraints) Performing minimization step: 4210. Total energy = 3258.0678 kcal/mol (3256.1604 without restraints) Performing minimization step: 4211. Total energy = 3257.9678 kcal/mol (3256.0607 without restraints) Performing minimization step: 4212. Total energy = 3257.8678 kcal/mol (3255.9609 without restraints) Performing minimization step: 4213. Total energy = 3257.7678 kcal/mol (3255.8612 without restraints) Performing minimization step: 4214. Total energy = 3257.6676 kcal/mol (3255.7614 without restraints) Performing minimization step: 4215. Total energy = 3257.5676 kcal/mol (3255.6617 without restraints) Performing minimization step: 4216. Total energy = 3257.4675 kcal/mol (3255.5620 without restraints) Performing minimization step: 4217. Total energy = 3257.3677 kcal/mol (3255.4624 without restraints) Performing minimization step: 4218. Total energy = 3257.2677 kcal/mol (3255.3629 without restraints) Performing minimization step: 4219. Total energy = 3257.1675 kcal/mol (3255.2629 without restraints) Performing minimization step: 4220. Total energy = 3257.0674 kcal/mol (3255.1633 without restraints) Performing minimization step: 4221. Total energy = 3256.9676 kcal/mol (3255.0637 without restraints) Performing minimization step: 4222. Total energy = 3256.8676 kcal/mol (3254.9639 without restraints) Performing minimization step: 4223. Total energy = 3256.7674 kcal/mol (3254.8641 without restraints) Performing minimization step: 4224. Total energy = 3256.6676 kcal/mol (3254.7646 without restraints) Performing minimization step: 4225. Total energy = 3256.5675 kcal/mol (3254.6648 without restraints) Performing minimization step: 4226. Total energy = 3256.4672 kcal/mol (3254.5648 without restraints) Performing minimization step: 4227. Total energy = 3256.3674 kcal/mol (3254.4653 without restraints) Performing minimization step: 4228. Total energy = 3256.2672 kcal/mol (3254.3653 without restraints) Performing minimization step: 4229. Total energy = 3256.1668 kcal/mol (3254.2653 without restraints) Performing minimization step: 4230. Total energy = 3256.0668 kcal/mol (3254.1655 without restraints) Performing minimization step: 4231. Total energy = 3255.9668 kcal/mol (3254.0659 without restraints) Performing minimization step: 4232. Total energy = 3255.8669 kcal/mol (3253.9663 without restraints) Performing minimization step: 4233. Total energy = 3255.7665 kcal/mol (3253.8662 without restraints) Performing minimization step: 4234. Total energy = 3255.6668 kcal/mol (3253.7668 without restraints) Performing minimization step: 4235. Total energy = 3255.5667 kcal/mol (3253.6670 without restraints) Performing minimization step: 4236. Total energy = 3255.4670 kcal/mol (3253.5676 without restraints) Performing minimization step: 4237. Total energy = 3255.3664 kcal/mol (3253.4673 without restraints) Performing minimization step: 4238. Total energy = 3255.2661 kcal/mol (3253.3674 without restraints) Performing minimization step: 4239. Total energy = 3255.1660 kcal/mol (3253.2675 without restraints) Performing minimization step: 4240. Total energy = 3255.0663 kcal/mol (3253.1682 without restraints) Performing minimization step: 4241. Total energy = 3254.9662 kcal/mol (3253.0684 without restraints) Performing minimization step: 4242. Total energy = 3254.8659 kcal/mol (3252.9683 without restraints) Performing minimization step: 4243. Total energy = 3254.7660 kcal/mol (3252.8688 without restraints) Performing minimization step: 4244. Total energy = 3254.6658 kcal/mol (3252.7689 without restraints) Performing minimization step: 4245. Total energy = 3254.5654 kcal/mol (3252.6688 without restraints) Performing minimization step: 4246. Total energy = 3254.4655 kcal/mol (3252.5692 without restraints) Performing minimization step: 4247. Total energy = 3254.3653 kcal/mol (3252.4693 without restraints) Performing minimization step: 4248. Total energy = 3254.2648 kcal/mol (3252.3691 without restraints) Performing minimization step: 4249. Total energy = 3254.1644 kcal/mol (3252.2690 without restraints) Performing minimization step: 4250. Total energy = 3254.0643 kcal/mol (3252.1694 without restraints) Performing minimization step: 4251. Total energy = 3253.9642 kcal/mol (3252.0694 without restraints) Performing minimization step: 4252. Total energy = 3253.8641 kcal/mol (3251.9697 without restraints) Performing minimization step: 4253. Total energy = 3253.7637 kcal/mol (3251.8695 without restraints) Performing minimization step: 4254. Total energy = 3253.6635 kcal/mol (3251.7696 without restraints) Performing minimization step: 4255. Total energy = 3253.5632 kcal/mol (3251.6696 without restraints) Performing minimization step: 4256. Total energy = 3253.4635 kcal/mol (3251.5703 without restraints) Performing minimization step: 4257. Total energy = 3253.3633 kcal/mol (3251.4704 without restraints) Performing minimization step: 4258. Total energy = 3253.2634 kcal/mol (3251.3707 without restraints) Performing minimization step: 4259. Total energy = 3253.1630 kcal/mol (3251.2705 without restraints) Performing minimization step: 4260. Total energy = 3253.0624 kcal/mol (3251.1703 without restraints) Performing minimization step: 4261. Total energy = 3252.9623 kcal/mol (3251.0705 without restraints) Performing minimization step: 4262. Total energy = 3252.8619 kcal/mol (3250.9704 without restraints) Performing minimization step: 4263. Total energy = 3252.7617 kcal/mol (3250.8704 without restraints) Performing minimization step: 4264. Total energy = 3252.6611 kcal/mol (3250.7702 without restraints) Performing minimization step: 4265. Total energy = 3252.5608 kcal/mol (3250.6702 without restraints) Performing minimization step: 4266. Total energy = 3252.4604 kcal/mol (3250.5700 without restraints) Performing minimization step: 4267. Total energy = 3252.3600 kcal/mol (3250.4700 without restraints) Performing minimization step: 4268. Total energy = 3252.2594 kcal/mol (3250.3697 without restraints) Performing minimization step: 4269. Total energy = 3252.1592 kcal/mol (3250.2699 without restraints) Performing minimization step: 4270. Total energy = 3252.0588 kcal/mol (3250.1697 without restraints) Performing minimization step: 4271. Total energy = 3251.9585 kcal/mol (3250.0697 without restraints) Performing minimization step: 4272. Total energy = 3251.8583 kcal/mol (3249.9698 without restraints) Performing minimization step: 4273. Total energy = 3251.7578 kcal/mol (3249.8696 without restraints) Performing minimization step: 4274. Total energy = 3251.6575 kcal/mol (3249.7695 without restraints) Performing minimization step: 4275. Total energy = 3251.5573 kcal/mol (3249.6698 without restraints) Performing minimization step: 4276. Total energy = 3251.4570 kcal/mol (3249.5697 without restraints) Performing minimization step: 4277. Total energy = 3251.3567 kcal/mol (3249.4697 without restraints) Performing minimization step: 4278. Total energy = 3251.2565 kcal/mol (3249.3699 without restraints) Performing minimization step: 4279. Total energy = 3251.1560 kcal/mol (3249.2694 without restraints) Performing minimization step: 4280. Total energy = 3251.0557 kcal/mol (3249.1696 without restraints) Performing minimization step: 4281. Total energy = 3250.9551 kcal/mol (3249.0692 without restraints) Performing minimization step: 4282. Total energy = 3250.8546 kcal/mol (3248.9690 without restraints) Performing minimization step: 4283. Total energy = 3250.7542 kcal/mol (3248.8689 without restraints) Performing minimization step: 4284. Total energy = 3250.6536 kcal/mol (3248.7685 without restraints) Performing minimization step: 4285. Total energy = 3250.5531 kcal/mol (3248.6685 without restraints) Performing minimization step: 4286. Total energy = 3250.4530 kcal/mol (3248.5686 without restraints) Performing minimization step: 4287. Total energy = 3250.3525 kcal/mol (3248.4683 without restraints) Performing minimization step: 4288. Total energy = 3250.2520 kcal/mol (3248.3681 without restraints) Performing minimization step: 4289. Total energy = 3250.1516 kcal/mol (3248.2681 without restraints) Performing minimization step: 4290. Total energy = 3250.0515 kcal/mol (3248.1683 without restraints) Performing minimization step: 4291. Total energy = 3249.9508 kcal/mol (3248.0679 without restraints) Performing minimization step: 4292. Total energy = 3249.8505 kcal/mol (3247.9679 without restraints) Performing minimization step: 4293. Total energy = 3249.7503 kcal/mol (3247.8680 without restraints) Performing minimization step: 4294. Total energy = 3249.6499 kcal/mol (3247.7678 without restraints) Performing minimization step: 4295. Total energy = 3249.5495 kcal/mol (3247.6677 without restraints) Performing minimization step: 4296. Total energy = 3249.4491 kcal/mol (3247.5676 without restraints) Performing minimization step: 4297. Total energy = 3249.3487 kcal/mol (3247.4675 without restraints) Performing minimization step: 4298. Total energy = 3249.2485 kcal/mol (3247.3677 without restraints) Performing minimization step: 4299. Total energy = 3249.1480 kcal/mol (3247.2674 without restraints) Performing minimization step: 4300. Total energy = 3249.0476 kcal/mol (3247.1673 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 3248.9470 kcal/mol (3247.0669 without restraints) Performing minimization step: 4302. Total energy = 3248.8466 kcal/mol (3246.9668 without restraints) Performing minimization step: 4303. Total energy = 3248.7462 kcal/mol (3246.8668 without restraints) Performing minimization step: 4304. Total energy = 3248.6456 kcal/mol (3246.7665 without restraints) Performing minimization step: 4305. Total energy = 3248.5455 kcal/mol (3246.6666 without restraints) Performing minimization step: 4306. Total energy = 3248.4451 kcal/mol (3246.5665 without restraints) Performing minimization step: 4307. Total energy = 3248.3448 kcal/mol (3246.4665 without restraints) Performing minimization step: 4308. Total energy = 3248.2444 kcal/mol (3246.3664 without restraints) Performing minimization step: 4309. Total energy = 3248.1440 kcal/mol (3246.2662 without restraints) Performing minimization step: 4310. Total energy = 3248.0435 kcal/mol (3246.1661 without restraints) Performing minimization step: 4311. Total energy = 3247.9431 kcal/mol (3246.0660 without restraints) Performing minimization step: 4312. Total energy = 3247.8425 kcal/mol (3245.9656 without restraints) Performing minimization step: 4313. Total energy = 3247.7421 kcal/mol (3245.8655 without restraints) Performing minimization step: 4314. Total energy = 3247.6417 kcal/mol (3245.7654 without restraints) Performing minimization step: 4315. Total energy = 3247.5410 kcal/mol (3245.6648 without restraints) Performing minimization step: 4316. Total energy = 3247.4406 kcal/mol (3245.5649 without restraints) Performing minimization step: 4317. Total energy = 3247.3403 kcal/mol (3245.4650 without restraints) Performing minimization step: 4318. Total energy = 3247.2398 kcal/mol (3245.3646 without restraints) Performing minimization step: 4319. Total energy = 3247.1394 kcal/mol (3245.2645 without restraints) Performing minimization step: 4320. Total energy = 3247.0393 kcal/mol (3245.1647 without restraints) Performing minimization step: 4321. Total energy = 3246.9391 kcal/mol (3245.0648 without restraints) Performing minimization step: 4322. Total energy = 3246.8385 kcal/mol (3244.9644 without restraints) Performing minimization step: 4323. Total energy = 3246.7382 kcal/mol (3244.8645 without restraints) Performing minimization step: 4324. Total energy = 3246.6378 kcal/mol (3244.7643 without restraints) Performing minimization step: 4325. Total energy = 3246.5370 kcal/mol (3244.6639 without restraints) Performing minimization step: 4326. Total energy = 3246.4366 kcal/mol (3244.5637 without restraints) Performing minimization step: 4327. Total energy = 3246.3360 kcal/mol (3244.4632 without restraints) Performing minimization step: 4328. Total energy = 3246.2352 kcal/mol (3244.3628 without restraints) Performing minimization step: 4329. Total energy = 3246.1352 kcal/mol (3244.2632 without restraints) Performing minimization step: 4330. Total energy = 3246.0345 kcal/mol (3244.1627 without restraints) Performing minimization step: 4331. Total energy = 3245.9341 kcal/mol (3244.0626 without restraints) Performing minimization step: 4332. Total energy = 3245.8341 kcal/mol (3243.9628 without restraints) Performing minimization step: 4333. Total energy = 3245.7335 kcal/mol (3243.8626 without restraints) Performing minimization step: 4334. Total energy = 3245.6336 kcal/mol (3243.7631 without restraints) Performing minimization step: 4335. Total energy = 3245.5332 kcal/mol (3243.6627 without restraints) Performing minimization step: 4336. Total energy = 3245.4326 kcal/mol (3243.5625 without restraints) Performing minimization step: 4337. Total energy = 3245.3323 kcal/mol (3243.4624 without restraints) Performing minimization step: 4338. Total energy = 3245.2319 kcal/mol (3243.3623 without restraints) Performing minimization step: 4339. Total energy = 3245.1314 kcal/mol (3243.2621 without restraints) Performing minimization step: 4340. Total energy = 3245.0310 kcal/mol (3243.1620 without restraints) Performing minimization step: 4341. Total energy = 3244.9305 kcal/mol (3243.0618 without restraints) Performing minimization step: 4342. Total energy = 3244.8299 kcal/mol (3242.9615 without restraints) Performing minimization step: 4343. Total energy = 3244.7294 kcal/mol (3242.8613 without restraints) Performing minimization step: 4344. Total energy = 3244.6289 kcal/mol (3242.7610 without restraints) Performing minimization step: 4345. Total energy = 3244.5288 kcal/mol (3242.6613 without restraints) Performing minimization step: 4346. Total energy = 3244.4284 kcal/mol (3242.5611 without restraints) Performing minimization step: 4347. Total energy = 3244.3277 kcal/mol (3242.4603 without restraints) Performing minimization step: 4348. Total energy = 3244.2269 kcal/mol (3242.3601 without restraints) Performing minimization step: 4349. Total energy = 3244.1264 kcal/mol (3242.2599 without restraints) Performing minimization step: 4350. Total energy = 3244.0260 kcal/mol (3242.1598 without restraints) Performing minimization step: 4351. Total energy = 3243.9255 kcal/mol (3242.0595 without restraints) Performing minimization step: 4352. Total energy = 3243.8251 kcal/mol (3241.9594 without restraints) Performing minimization step: 4353. Total energy = 3243.7249 kcal/mol (3241.8595 without restraints) Performing minimization step: 4354. Total energy = 3243.6245 kcal/mol (3241.7594 without restraints) Performing minimization step: 4355. Total energy = 3243.5242 kcal/mol (3241.6593 without restraints) Performing minimization step: 4356. Total energy = 3243.4239 kcal/mol (3241.5593 without restraints) Performing minimization step: 4357. Total energy = 3243.3234 kcal/mol (3241.4591 without restraints) Performing minimization step: 4358. Total energy = 3243.2229 kcal/mol (3241.3588 without restraints) Performing minimization step: 4359. Total energy = 3243.1226 kcal/mol (3241.2588 without restraints) Performing minimization step: 4360. Total energy = 3243.0221 kcal/mol (3241.1585 without restraints) Performing minimization step: 4361. Total energy = 3242.9214 kcal/mol (3241.0582 without restraints) Performing minimization step: 4362. Total energy = 3242.8211 kcal/mol (3240.9584 without restraints) Performing minimization step: 4363. Total energy = 3242.7206 kcal/mol (3240.8579 without restraints) Performing minimization step: 4364. Total energy = 3242.6203 kcal/mol (3240.7579 without restraints) Performing minimization step: 4365. Total energy = 3242.5195 kcal/mol (3240.6574 without restraints) Performing minimization step: 4366. Total energy = 3242.4190 kcal/mol (3240.5571 without restraints) Performing minimization step: 4367. Total energy = 3242.3185 kcal/mol (3240.4569 without restraints) Performing minimization step: 4368. Total energy = 3242.2181 kcal/mol (3240.3568 without restraints) Performing minimization step: 4369. Total energy = 3242.1176 kcal/mol (3240.2565 without restraints) Performing minimization step: 4370. Total energy = 3242.0171 kcal/mol (3240.1563 without restraints) Performing minimization step: 4371. Total energy = 3241.9166 kcal/mol (3240.0560 without restraints) Performing minimization step: 4372. Total energy = 3241.8160 kcal/mol (3239.9558 without restraints) Performing minimization step: 4373. Total energy = 3241.7157 kcal/mol (3239.8557 without restraints) Performing minimization step: 4374. Total energy = 3241.6154 kcal/mol (3239.7557 without restraints) Performing minimization step: 4375. Total energy = 3241.5148 kcal/mol (3239.6554 without restraints) Performing minimization step: 4376. Total energy = 3241.4143 kcal/mol (3239.5551 without restraints) Performing minimization step: 4377. Total energy = 3241.3135 kcal/mol (3239.4546 without restraints) Performing minimization step: 4378. Total energy = 3241.2130 kcal/mol (3239.3543 without restraints) Performing minimization step: 4379. Total energy = 3241.1124 kcal/mol (3239.2540 without restraints) Performing minimization step: 4380. Total energy = 3241.0120 kcal/mol (3239.1539 without restraints) Performing minimization step: 4381. Total energy = 3240.9114 kcal/mol (3239.0536 without restraints) Performing minimization step: 4382. Total energy = 3240.8106 kcal/mol (3238.9529 without restraints) Performing minimization step: 4383. Total energy = 3240.7099 kcal/mol (3238.8525 without restraints) Performing minimization step: 4384. Total energy = 3240.6091 kcal/mol (3238.7521 without restraints) Performing minimization step: 4385. Total energy = 3240.5088 kcal/mol (3238.6520 without restraints) Performing minimization step: 4386. Total energy = 3240.4083 kcal/mol (3238.5517 without restraints) Performing minimization step: 4387. Total energy = 3240.3077 kcal/mol (3238.4515 without restraints) Performing minimization step: 4388. Total energy = 3240.2073 kcal/mol (3238.3513 without restraints) Performing minimization step: 4389. Total energy = 3240.1067 kcal/mol (3238.2511 without restraints) Performing minimization step: 4390. Total energy = 3240.0062 kcal/mol (3238.1508 without restraints) Performing minimization step: 4391. Total energy = 3239.9053 kcal/mol (3238.0501 without restraints) Performing minimization step: 4392. Total energy = 3239.8048 kcal/mol (3237.9499 without restraints) Performing minimization step: 4393. Total energy = 3239.7041 kcal/mol (3237.8495 without restraints) Performing minimization step: 4394. Total energy = 3239.6035 kcal/mol (3237.7491 without restraints) Performing minimization step: 4395. Total energy = 3239.5032 kcal/mol (3237.6491 without restraints) Performing minimization step: 4396. Total energy = 3239.4027 kcal/mol (3237.5488 without restraints) Performing minimization step: 4397. Total energy = 3239.3020 kcal/mol (3237.4484 without restraints) Performing minimization step: 4398. Total energy = 3239.2017 kcal/mol (3237.3484 without restraints) Performing minimization step: 4399. Total energy = 3239.1013 kcal/mol (3237.2483 without restraints) Performing minimization step: 4400. Total energy = 3239.0011 kcal/mol (3237.1483 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 3238.9005 kcal/mol (3237.0480 without restraints) Performing minimization step: 4402. Total energy = 3238.7999 kcal/mol (3236.9477 without restraints) Performing minimization step: 4403. Total energy = 3238.6994 kcal/mol (3236.8474 without restraints) Performing minimization step: 4404. Total energy = 3238.5990 kcal/mol (3236.7473 without restraints) Performing minimization step: 4405. Total energy = 3238.4985 kcal/mol (3236.6471 without restraints) Performing minimization step: 4406. Total energy = 3238.3984 kcal/mol (3236.5472 without restraints) Performing minimization step: 4407. Total energy = 3238.2979 kcal/mol (3236.4470 without restraints) Performing minimization step: 4408. Total energy = 3238.1971 kcal/mol (3236.3464 without restraints) Performing minimization step: 4409. Total energy = 3238.0968 kcal/mol (3236.2463 without restraints) Performing minimization step: 4410. Total energy = 3237.9963 kcal/mol (3236.1461 without restraints) Performing minimization step: 4411. Total energy = 3237.8958 kcal/mol (3236.0458 without restraints) Performing minimization step: 4412. Total energy = 3237.7952 kcal/mol (3235.9455 without restraints) Performing minimization step: 4413. Total energy = 3237.6948 kcal/mol (3235.8454 without restraints) Performing minimization step: 4414. Total energy = 3237.5943 kcal/mol (3235.7451 without restraints) Performing minimization step: 4415. Total energy = 3237.4938 kcal/mol (3235.6450 without restraints) Performing minimization step: 4416. Total energy = 3237.3933 kcal/mol (3235.5447 without restraints) Performing minimization step: 4417. Total energy = 3237.2928 kcal/mol (3235.4445 without restraints) Performing minimization step: 4418. Total energy = 3237.1922 kcal/mol (3235.3441 without restraints) Performing minimization step: 4419. Total energy = 3237.0920 kcal/mol (3235.2442 without restraints) Performing minimization step: 4420. Total energy = 3236.9916 kcal/mol (3235.1440 without restraints) Performing minimization step: 4421. Total energy = 3236.8908 kcal/mol (3235.0435 without restraints) Performing minimization step: 4422. Total energy = 3236.7905 kcal/mol (3234.9435 without restraints) Performing minimization step: 4423. Total energy = 3236.6900 kcal/mol (3234.8432 without restraints) Performing minimization step: 4424. Total energy = 3236.5894 kcal/mol (3234.7427 without restraints) Performing minimization step: 4425. Total energy = 3236.4888 kcal/mol (3234.6425 without restraints) Performing minimization step: 4426. Total energy = 3236.3882 kcal/mol (3234.5422 without restraints) Performing minimization step: 4427. Total energy = 3236.2877 kcal/mol (3234.4419 without restraints) Performing minimization step: 4428. Total energy = 3236.1871 kcal/mol (3234.3415 without restraints) Performing minimization step: 4429. Total energy = 3236.0867 kcal/mol (3234.2416 without restraints) Performing minimization step: 4430. Total energy = 3235.9863 kcal/mol (3234.1413 without restraints) Performing minimization step: 4431. Total energy = 3235.8858 kcal/mol (3234.0410 without restraints) Performing minimization step: 4432. Total energy = 3235.7856 kcal/mol (3233.9412 without restraints) Performing minimization step: 4433. Total energy = 3235.6851 kcal/mol (3233.8408 without restraints) Performing minimization step: 4434. Total energy = 3235.5846 kcal/mol (3233.7406 without restraints) Performing minimization step: 4435. Total energy = 3235.4844 kcal/mol (3233.6405 without restraints) Performing minimization step: 4436. Total energy = 3235.3839 kcal/mol (3233.5405 without restraints) Performing minimization step: 4437. Total energy = 3235.2833 kcal/mol (3233.4401 without restraints) Performing minimization step: 4438. Total energy = 3235.1828 kcal/mol (3233.3399 without restraints) Performing minimization step: 4439. Total energy = 3235.0820 kcal/mol (3233.2392 without restraints) Performing minimization step: 4440. Total energy = 3234.9814 kcal/mol (3233.1389 without restraints) Performing minimization step: 4441. Total energy = 3234.8808 kcal/mol (3233.0386 without restraints) Performing minimization step: 4442. Total energy = 3234.7803 kcal/mol (3232.9384 without restraints) Performing minimization step: 4443. Total energy = 3234.6798 kcal/mol (3232.8381 without restraints) Performing minimization step: 4444. Total energy = 3234.5794 kcal/mol (3232.7379 without restraints) Performing minimization step: 4445. Total energy = 3234.4789 kcal/mol (3232.6377 without restraints) Performing minimization step: 4446. Total energy = 3234.3783 kcal/mol (3232.5373 without restraints) Performing minimization step: 4447. Total energy = 3234.2777 kcal/mol (3232.4370 without restraints) Performing minimization step: 4448. Total energy = 3234.1772 kcal/mol (3232.3367 without restraints) Performing minimization step: 4449. Total energy = 3234.0767 kcal/mol (3232.2365 without restraints) Performing minimization step: 4450. Total energy = 3233.9764 kcal/mol (3232.1365 without restraints) Performing minimization step: 4451. Total energy = 3233.8760 kcal/mol (3232.0365 without restraints) Performing minimization step: 4452. Total energy = 3233.7759 kcal/mol (3231.9365 without restraints) Performing minimization step: 4453. Total energy = 3233.6751 kcal/mol (3231.8360 without restraints) Performing minimization step: 4454. Total energy = 3233.5747 kcal/mol (3231.7357 without restraints) Performing minimization step: 4455. Total energy = 3233.4742 kcal/mol (3231.6355 without restraints) Performing minimization step: 4456. Total energy = 3233.3736 kcal/mol (3231.5352 without restraints) Performing minimization step: 4457. Total energy = 3233.2734 kcal/mol (3231.4353 without restraints) Performing minimization step: 4458. Total energy = 3233.1729 kcal/mol (3231.3350 without restraints) Performing minimization step: 4459. Total energy = 3233.0721 kcal/mol (3231.2344 without restraints) Performing minimization step: 4460. Total energy = 3232.9712 kcal/mol (3231.1337 without restraints) Performing minimization step: 4461. Total energy = 3232.8707 kcal/mol (3231.0335 without restraints) Performing minimization step: 4462. Total energy = 3232.7703 kcal/mol (3230.9334 without restraints) Performing minimization step: 4463. Total energy = 3232.6698 kcal/mol (3230.8332 without restraints) Performing minimization step: 4464. Total energy = 3232.5695 kcal/mol (3230.7331 without restraints) Performing minimization step: 4465. Total energy = 3232.4690 kcal/mol (3230.6328 without restraints) Performing minimization step: 4466. Total energy = 3232.3686 kcal/mol (3230.5327 without restraints) Performing minimization step: 4467. Total energy = 3232.2682 kcal/mol (3230.4325 without restraints) Performing minimization step: 4468. Total energy = 3232.1678 kcal/mol (3230.3323 without restraints) Performing minimization step: 4469. Total energy = 3232.0672 kcal/mol (3230.2320 without restraints) Performing minimization step: 4470. Total energy = 3231.9668 kcal/mol (3230.1319 without restraints) Performing minimization step: 4471. Total energy = 3231.8663 kcal/mol (3230.0315 without restraints) Performing minimization step: 4472. Total energy = 3231.7660 kcal/mol (3229.9315 without restraints) Performing minimization step: 4473. Total energy = 3231.6654 kcal/mol (3229.8312 without restraints) Performing minimization step: 4474. Total energy = 3231.5649 kcal/mol (3229.7308 without restraints) Performing minimization step: 4475. Total energy = 3231.4642 kcal/mol (3229.6305 without restraints) Performing minimization step: 4476. Total energy = 3231.3641 kcal/mol (3229.5306 without restraints) Performing minimization step: 4477. Total energy = 3231.2639 kcal/mol (3229.4308 without restraints) Performing minimization step: 4478. Total energy = 3231.1636 kcal/mol (3229.3306 without restraints) Performing minimization step: 4479. Total energy = 3231.0631 kcal/mol (3229.2305 without restraints) Performing minimization step: 4480. Total energy = 3230.9625 kcal/mol (3229.1299 without restraints) Performing minimization step: 4481. Total energy = 3230.8622 kcal/mol (3229.0300 without restraints) Performing minimization step: 4482. Total energy = 3230.7618 kcal/mol (3228.9299 without restraints) Performing minimization step: 4483. Total energy = 3230.6615 kcal/mol (3228.8298 without restraints) Performing minimization step: 4484. Total energy = 3230.5611 kcal/mol (3228.7296 without restraints) Performing minimization step: 4485. Total energy = 3230.4609 kcal/mol (3228.6297 without restraints) Performing minimization step: 4486. Total energy = 3230.3604 kcal/mol (3228.5294 without restraints) Performing minimization step: 4487. Total energy = 3230.2598 kcal/mol (3228.4291 without restraints) Performing minimization step: 4488. Total energy = 3230.1595 kcal/mol (3228.3290 without restraints) Performing minimization step: 4489. Total energy = 3230.0594 kcal/mol (3228.2291 without restraints) Performing minimization step: 4490. Total energy = 3229.9593 kcal/mol (3228.1292 without restraints) Performing minimization step: 4491. Total energy = 3229.8589 kcal/mol (3228.0291 without restraints) Performing minimization step: 4492. Total energy = 3229.7586 kcal/mol (3227.9291 without restraints) Performing minimization step: 4493. Total energy = 3229.6584 kcal/mol (3227.8291 without restraints) Performing minimization step: 4494. Total energy = 3229.5580 kcal/mol (3227.7287 without restraints) Performing minimization step: 4495. Total energy = 3229.4577 kcal/mol (3227.6289 without restraints) Performing minimization step: 4496. Total energy = 3229.3574 kcal/mol (3227.5289 without restraints) Performing minimization step: 4497. Total energy = 3229.2572 kcal/mol (3227.4289 without restraints) Performing minimization step: 4498. Total energy = 3229.1568 kcal/mol (3227.3288 without restraints) Performing minimization step: 4499. Total energy = 3229.0569 kcal/mol (3227.2292 without restraints) Performing minimization step: 4500. Total energy = 3228.9567 kcal/mol (3227.1290 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 3228.8566 kcal/mol (3227.0292 without restraints) Performing minimization step: 4502. Total energy = 3228.7563 kcal/mol (3226.9292 without restraints) Performing minimization step: 4503. Total energy = 3228.6561 kcal/mol (3226.8293 without restraints) Performing minimization step: 4504. Total energy = 3228.5559 kcal/mol (3226.7293 without restraints) Performing minimization step: 4505. Total energy = 3228.4557 kcal/mol (3226.6293 without restraints) Performing minimization step: 4506. Total energy = 3228.3555 kcal/mol (3226.5294 without restraints) Performing minimization step: 4507. Total energy = 3228.2552 kcal/mol (3226.4293 without restraints) Performing minimization step: 4508. Total energy = 3228.1550 kcal/mol (3226.3294 without restraints) Performing minimization step: 4509. Total energy = 3228.0545 kcal/mol (3226.2291 without restraints) Performing minimization step: 4510. Total energy = 3227.9543 kcal/mol (3226.1292 without restraints) Performing minimization step: 4511. Total energy = 3227.8540 kcal/mol (3226.0291 without restraints) Performing minimization step: 4512. Total energy = 3227.7537 kcal/mol (3225.9290 without restraints) Performing minimization step: 4513. Total energy = 3227.6534 kcal/mol (3225.8289 without restraints) Performing minimization step: 4514. Total energy = 3227.5533 kcal/mol (3225.7291 without restraints) Performing minimization step: 4515. Total energy = 3227.4531 kcal/mol (3225.6293 without restraints) Performing minimization step: 4516. Total energy = 3227.3532 kcal/mol (3225.5295 without restraints) Performing minimization step: 4517. Total energy = 3227.2532 kcal/mol (3225.4297 without restraints) Performing minimization step: 4518. Total energy = 3227.1528 kcal/mol (3225.3296 without restraints) Performing minimization step: 4519. Total energy = 3227.0526 kcal/mol (3225.2296 without restraints) Performing minimization step: 4520. Total energy = 3226.9524 kcal/mol (3225.1296 without restraints) Performing minimization step: 4521. Total energy = 3226.8523 kcal/mol (3225.0298 without restraints) Performing minimization step: 4522. Total energy = 3226.7523 kcal/mol (3224.9300 without restraints) Performing minimization step: 4523. Total energy = 3226.6522 kcal/mol (3224.8301 without restraints) Performing minimization step: 4524. Total energy = 3226.5522 kcal/mol (3224.7305 without restraints) Performing minimization step: 4525. Total energy = 3226.4524 kcal/mol (3224.6310 without restraints) Performing minimization step: 4526. Total energy = 3226.3525 kcal/mol (3224.5312 without restraints) Performing minimization step: 4527. Total energy = 3226.2533 kcal/mol (3224.4322 without restraints) Performing minimization step: 4528. Total energy = 3226.1534 kcal/mol (3224.3326 without restraints) Performing minimization step: 4529. Total energy = 3226.0534 kcal/mol (3224.2329 without restraints) Performing minimization step: 4530. Total energy = 3225.9537 kcal/mol (3224.1334 without restraints) Performing minimization step: 4531. Total energy = 3225.8537 kcal/mol (3224.0336 without restraints) Performing minimization step: 4532. Total energy = 3225.7537 kcal/mol (3223.9338 without restraints) Performing minimization step: 4533. Total energy = 3225.6539 kcal/mol (3223.8344 without restraints) Performing minimization step: 4534. Total energy = 3225.5537 kcal/mol (3223.7344 without restraints) Performing minimization step: 4535. Total energy = 3225.4541 kcal/mol (3223.6349 without restraints) Performing minimization step: 4536. Total energy = 3225.3544 kcal/mol (3223.5355 without restraints) Performing minimization step: 4537. Total energy = 3225.2548 kcal/mol (3223.4362 without restraints) Performing minimization step: 4538. Total energy = 3225.1551 kcal/mol (3223.3366 without restraints) Performing minimization step: 4539. Total energy = 3225.0554 kcal/mol (3223.2373 without restraints) Performing minimization step: 4540. Total energy = 3224.9557 kcal/mol (3223.1377 without restraints) Performing minimization step: 4541. Total energy = 3224.8557 kcal/mol (3223.0380 without restraints) Performing minimization step: 4542. Total energy = 3224.7562 kcal/mol (3222.9389 without restraints) Performing minimization step: 4543. Total energy = 3224.6567 kcal/mol (3222.8396 without restraints) Performing minimization step: 4544. Total energy = 3224.5572 kcal/mol (3222.7402 without restraints) Performing minimization step: 4545. Total energy = 3224.4576 kcal/mol (3222.6409 without restraints) Performing minimization step: 4546. Total energy = 3224.3580 kcal/mol (3222.5415 without restraints) Performing minimization step: 4547. Total energy = 3224.2587 kcal/mol (3222.4425 without restraints) Performing minimization step: 4548. Total energy = 3224.1589 kcal/mol (3222.3428 without restraints) Performing minimization step: 4549. Total energy = 3224.0593 kcal/mol (3222.2435 without restraints) Performing minimization step: 4550. Total energy = 3223.9596 kcal/mol (3222.1440 without restraints) Performing minimization step: 4551. Total energy = 3223.8600 kcal/mol (3222.0446 without restraints) Performing minimization step: 4552. Total energy = 3223.7604 kcal/mol (3221.9453 without restraints) Performing minimization step: 4553. Total energy = 3223.6607 kcal/mol (3221.8458 without restraints) Performing minimization step: 4554. Total energy = 3223.5612 kcal/mol (3221.7465 without restraints) Performing minimization step: 4555. Total energy = 3223.4617 kcal/mol (3221.6473 without restraints) Performing minimization step: 4556. Total energy = 3223.3622 kcal/mol (3221.5480 without restraints) Performing minimization step: 4557. Total energy = 3223.2627 kcal/mol (3221.4488 without restraints) Performing minimization step: 4558. Total energy = 3223.1630 kcal/mol (3221.3493 without restraints) Performing minimization step: 4559. Total energy = 3223.0634 kcal/mol (3221.2499 without restraints) Performing minimization step: 4560. Total energy = 3222.9640 kcal/mol (3221.1507 without restraints) Performing minimization step: 4561. Total energy = 3222.8643 kcal/mol (3221.0511 without restraints) Performing minimization step: 4562. Total energy = 3222.7647 kcal/mol (3220.9520 without restraints) Performing minimization step: 4563. Total energy = 3222.6653 kcal/mol (3220.8526 without restraints) Performing minimization step: 4564. Total energy = 3222.5655 kcal/mol (3220.7531 without restraints) Performing minimization step: 4565. Total energy = 3222.4661 kcal/mol (3220.6540 without restraints) Performing minimization step: 4566. Total energy = 3222.3668 kcal/mol (3220.5550 without restraints) Performing minimization step: 4567. Total energy = 3222.2675 kcal/mol (3220.4559 without restraints) Performing minimization step: 4568. Total energy = 3222.1682 kcal/mol (3220.3569 without restraints) Performing minimization step: 4569. Total energy = 3222.0695 kcal/mol (3220.2584 without restraints) Performing minimization step: 4570. Total energy = 3221.9701 kcal/mol (3220.1589 without restraints) Performing minimization step: 4571. Total energy = 3221.8706 kcal/mol (3220.0599 without restraints) Performing minimization step: 4572. Total energy = 3221.7714 kcal/mol (3219.9610 without restraints) Performing minimization step: 4573. Total energy = 3221.6724 kcal/mol (3219.8622 without restraints) Performing minimization step: 4574. Total energy = 3221.5734 kcal/mol (3219.7635 without restraints) Performing minimization step: 4575. Total energy = 3221.4744 kcal/mol (3219.6647 without restraints) Performing minimization step: 4576. Total energy = 3221.3753 kcal/mol (3219.5658 without restraints) Performing minimization step: 4577. Total energy = 3221.2764 kcal/mol (3219.4671 without restraints) Performing minimization step: 4578. Total energy = 3221.1773 kcal/mol (3219.3683 without restraints) Performing minimization step: 4579. Total energy = 3221.0780 kcal/mol (3219.2692 without restraints) Performing minimization step: 4580. Total energy = 3220.9795 kcal/mol (3219.1709 without restraints) Performing minimization step: 4581. Total energy = 3220.8808 kcal/mol (3219.0725 without restraints) Performing minimization step: 4582. Total energy = 3220.7821 kcal/mol (3218.9739 without restraints) Performing minimization step: 4583. Total energy = 3220.6831 kcal/mol (3218.8752 without restraints) Performing minimization step: 4584. Total energy = 3220.5842 kcal/mol (3218.7765 without restraints) Performing minimization step: 4585. Total energy = 3220.4853 kcal/mol (3218.6778 without restraints) Performing minimization step: 4586. Total energy = 3220.3863 kcal/mol (3218.5790 without restraints) Performing minimization step: 4587. Total energy = 3220.2874 kcal/mol (3218.4806 without restraints) Performing minimization step: 4588. Total energy = 3220.1884 kcal/mol (3218.3817 without restraints) Performing minimization step: 4589. Total energy = 3220.0895 kcal/mol (3218.2831 without restraints) Performing minimization step: 4590. Total energy = 3219.9907 kcal/mol (3218.1845 without restraints) Performing minimization step: 4591. Total energy = 3219.8922 kcal/mol (3218.0863 without restraints) Performing minimization step: 4592. Total energy = 3219.7938 kcal/mol (3217.9881 without restraints) Performing minimization step: 4593. Total energy = 3219.6956 kcal/mol (3217.8901 without restraints) Performing minimization step: 4594. Total energy = 3219.5972 kcal/mol (3217.7918 without restraints) Performing minimization step: 4595. Total energy = 3219.4985 kcal/mol (3217.6934 without restraints) Performing minimization step: 4596. Total energy = 3219.4000 kcal/mol (3217.5951 without restraints) Performing minimization step: 4597. Total energy = 3219.3011 kcal/mol (3217.4965 without restraints) Performing minimization step: 4598. Total energy = 3219.2025 kcal/mol (3217.3981 without restraints) Performing minimization step: 4599. Total energy = 3219.1039 kcal/mol (3217.2997 without restraints) Performing minimization step: 4600. Total energy = 3219.0059 kcal/mol (3217.2021 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 3218.9074 kcal/mol (3217.1037 without restraints) Performing minimization step: 4602. Total energy = 3218.8089 kcal/mol (3217.0054 without restraints) Performing minimization step: 4603. Total energy = 3218.7106 kcal/mol (3216.9073 without restraints) Performing minimization step: 4604. Total energy = 3218.6119 kcal/mol (3216.8089 without restraints) Performing minimization step: 4605. Total energy = 3218.5133 kcal/mol (3216.7105 without restraints) Performing minimization step: 4606. Total energy = 3218.4151 kcal/mol (3216.6125 without restraints) Performing minimization step: 4607. Total energy = 3218.3167 kcal/mol (3216.5144 without restraints) Performing minimization step: 4608. Total energy = 3218.2184 kcal/mol (3216.4163 without restraints) Performing minimization step: 4609. Total energy = 3218.1202 kcal/mol (3216.3183 without restraints) Performing minimization step: 4610. Total energy = 3218.0220 kcal/mol (3216.2204 without restraints) Performing minimization step: 4611. Total energy = 3217.9237 kcal/mol (3216.1223 without restraints) Performing minimization step: 4612. Total energy = 3217.8255 kcal/mol (3216.0243 without restraints) Performing minimization step: 4613. Total energy = 3217.7275 kcal/mol (3215.9266 without restraints) Performing minimization step: 4614. Total energy = 3217.6291 kcal/mol (3215.8284 without restraints) Performing minimization step: 4615. Total energy = 3217.5310 kcal/mol (3215.7305 without restraints) Performing minimization step: 4616. Total energy = 3217.4329 kcal/mol (3215.6327 without restraints) Performing minimization step: 4617. Total energy = 3217.3350 kcal/mol (3215.5349 without restraints) Performing minimization step: 4618. Total energy = 3217.2372 kcal/mol (3215.4373 without restraints) Performing minimization step: 4619. Total energy = 3217.1392 kcal/mol (3215.3396 without restraints) Performing minimization step: 4620. Total energy = 3217.0412 kcal/mol (3215.2419 without restraints) Performing minimization step: 4621. Total energy = 3216.9432 kcal/mol (3215.1441 without restraints) Performing minimization step: 4622. Total energy = 3216.8453 kcal/mol (3215.0464 without restraints) Performing minimization step: 4623. Total energy = 3216.7469 kcal/mol (3214.9482 without restraints) Performing minimization step: 4624. Total energy = 3216.6489 kcal/mol (3214.8503 without restraints) Performing minimization step: 4625. Total energy = 3216.5515 kcal/mol (3214.7533 without restraints) Performing minimization step: 4626. Total energy = 3216.4537 kcal/mol (3214.6557 without restraints) Performing minimization step: 4627. Total energy = 3216.3559 kcal/mol (3214.5581 without restraints) Performing minimization step: 4628. Total energy = 3216.2584 kcal/mol (3214.4609 without restraints) Performing minimization step: 4629. Total energy = 3216.1610 kcal/mol (3214.3637 without restraints) Performing minimization step: 4630. Total energy = 3216.0633 kcal/mol (3214.2662 without restraints) Performing minimization step: 4631. Total energy = 3215.9657 kcal/mol (3214.1688 without restraints) Performing minimization step: 4632. Total energy = 3215.8681 kcal/mol (3214.0716 without restraints) Performing minimization step: 4633. Total energy = 3215.7706 kcal/mol (3213.9742 without restraints) Performing minimization step: 4634. Total energy = 3215.6731 kcal/mol (3213.8769 without restraints) Performing minimization step: 4635. Total energy = 3215.5756 kcal/mol (3213.7796 without restraints) Performing minimization step: 4636. Total energy = 3215.4782 kcal/mol (3213.6826 without restraints) Performing minimization step: 4637. Total energy = 3215.3809 kcal/mol (3213.5854 without restraints) Performing minimization step: 4638. Total energy = 3215.2835 kcal/mol (3213.4882 without restraints) Performing minimization step: 4639. Total energy = 3215.1863 kcal/mol (3213.3913 without restraints) Performing minimization step: 4640. Total energy = 3215.0888 kcal/mol (3213.2939 without restraints) Performing minimization step: 4641. Total energy = 3214.9913 kcal/mol (3213.1968 without restraints) Performing minimization step: 4642. Total energy = 3214.8938 kcal/mol (3213.0995 without restraints) Performing minimization step: 4643. Total energy = 3214.7967 kcal/mol (3213.0026 without restraints) Performing minimization step: 4644. Total energy = 3214.6996 kcal/mol (3212.9058 without restraints) Performing minimization step: 4645. Total energy = 3214.6025 kcal/mol (3212.8088 without restraints) Performing minimization step: 4646. Total energy = 3214.5053 kcal/mol (3212.7119 without restraints) Performing minimization step: 4647. Total energy = 3214.4078 kcal/mol (3212.6146 without restraints) Performing minimization step: 4648. Total energy = 3214.3108 kcal/mol (3212.5179 without restraints) Performing minimization step: 4649. Total energy = 3214.2130 kcal/mol (3212.4203 without restraints) Performing minimization step: 4650. Total energy = 3214.1157 kcal/mol (3212.3232 without restraints) Performing minimization step: 4651. Total energy = 3214.0185 kcal/mol (3212.2260 without restraints) Performing minimization step: 4652. Total energy = 3213.9210 kcal/mol (3212.1290 without restraints) Performing minimization step: 4653. Total energy = 3213.8241 kcal/mol (3212.0322 without restraints) Performing minimization step: 4654. Total energy = 3213.7271 kcal/mol (3211.9355 without restraints) Performing minimization step: 4655. Total energy = 3213.6302 kcal/mol (3211.8388 without restraints) Performing minimization step: 4656. Total energy = 3213.5329 kcal/mol (3211.7417 without restraints) Performing minimization step: 4657. Total energy = 3213.4359 kcal/mol (3211.6449 without restraints) Performing minimization step: 4658. Total energy = 3213.3391 kcal/mol (3211.5484 without restraints) Performing minimization step: 4659. Total energy = 3213.2422 kcal/mol (3211.4516 without restraints) Performing minimization step: 4660. Total energy = 3213.1454 kcal/mol (3211.3551 without restraints) Performing minimization step: 4661. Total energy = 3213.0485 kcal/mol (3211.2584 without restraints) Performing minimization step: 4662. Total energy = 3212.9518 kcal/mol (3211.1620 without restraints) Performing minimization step: 4663. Total energy = 3212.8552 kcal/mol (3211.0656 without restraints) Performing minimization step: 4664. Total energy = 3212.7587 kcal/mol (3210.9693 without restraints) Performing minimization step: 4665. Total energy = 3212.6621 kcal/mol (3210.8729 without restraints) Performing minimization step: 4666. Total energy = 3212.5654 kcal/mol (3210.7764 without restraints) Performing minimization step: 4667. Total energy = 3212.4690 kcal/mol (3210.6804 without restraints) Performing minimization step: 4668. Total energy = 3212.3727 kcal/mol (3210.5843 without restraints) Performing minimization step: 4669. Total energy = 3212.2763 kcal/mol (3210.4881 without restraints) Performing minimization step: 4670. Total energy = 3212.1800 kcal/mol (3210.3920 without restraints) Performing minimization step: 4671. Total energy = 3212.0837 kcal/mol (3210.2959 without restraints) Performing minimization step: 4672. Total energy = 3211.9874 kcal/mol (3210.1998 without restraints) Performing minimization step: 4673. Total energy = 3211.8911 kcal/mol (3210.1038 without restraints) Performing minimization step: 4674. Total energy = 3211.7950 kcal/mol (3210.0080 without restraints) Performing minimization step: 4675. Total energy = 3211.6991 kcal/mol (3209.9122 without restraints) Performing minimization step: 4676. Total energy = 3211.6029 kcal/mol (3209.8163 without restraints) Performing minimization step: 4677. Total energy = 3211.5071 kcal/mol (3209.7207 without restraints) Performing minimization step: 4678. Total energy = 3211.4112 kcal/mol (3209.6250 without restraints) Performing minimization step: 4679. Total energy = 3211.3154 kcal/mol (3209.5294 without restraints) Performing minimization step: 4680. Total energy = 3211.2194 kcal/mol (3209.4336 without restraints) Performing minimization step: 4681. Total energy = 3211.1235 kcal/mol (3209.3380 without restraints) Performing minimization step: 4682. Total energy = 3211.0276 kcal/mol (3209.2423 without restraints) Performing minimization step: 4683. Total energy = 3210.9320 kcal/mol (3209.1469 without restraints) Performing minimization step: 4684. Total energy = 3210.8361 kcal/mol (3209.0512 without restraints) Performing minimization step: 4685. Total energy = 3210.7401 kcal/mol (3208.9554 without restraints) Performing minimization step: 4686. Total energy = 3210.6444 kcal/mol (3208.8599 without restraints) Performing minimization step: 4687. Total energy = 3210.5487 kcal/mol (3208.7645 without restraints) Performing minimization step: 4688. Total energy = 3210.4528 kcal/mol (3208.6688 without restraints) Performing minimization step: 4689. Total energy = 3210.3574 kcal/mol (3208.5737 without restraints) Performing minimization step: 4690. Total energy = 3210.2620 kcal/mol (3208.4784 without restraints) Performing minimization step: 4691. Total energy = 3210.1668 kcal/mol (3208.3835 without restraints) Performing minimization step: 4692. Total energy = 3210.0708 kcal/mol (3208.2877 without restraints) Performing minimization step: 4693. Total energy = 3209.9755 kcal/mol (3208.1926 without restraints) Performing minimization step: 4694. Total energy = 3209.8802 kcal/mol (3208.0976 without restraints) Performing minimization step: 4695. Total energy = 3209.7850 kcal/mol (3208.0027 without restraints) Performing minimization step: 4696. Total energy = 3209.6898 kcal/mol (3207.9075 without restraints) Performing minimization step: 4697. Total energy = 3209.5950 kcal/mol (3207.8130 without restraints) Performing minimization step: 4698. Total energy = 3209.4995 kcal/mol (3207.7177 without restraints) Performing minimization step: 4699. Total energy = 3209.4043 kcal/mol (3207.6227 without restraints) Performing minimization step: 4700. Total energy = 3209.3090 kcal/mol (3207.5277 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 3209.2138 kcal/mol (3207.4327 without restraints) Performing minimization step: 4702. Total energy = 3209.1188 kcal/mol (3207.3378 without restraints) Performing minimization step: 4703. Total energy = 3209.0236 kcal/mol (3207.2429 without restraints) Performing minimization step: 4704. Total energy = 3208.9285 kcal/mol (3207.1480 without restraints) Performing minimization step: 4705. Total energy = 3208.8336 kcal/mol (3207.0534 without restraints) Performing minimization step: 4706. Total energy = 3208.7388 kcal/mol (3206.9588 without restraints) Performing minimization step: 4707. Total energy = 3208.6438 kcal/mol (3206.8641 without restraints) Performing minimization step: 4708. Total energy = 3208.5489 kcal/mol (3206.7694 without restraints) Performing minimization step: 4709. Total energy = 3208.4541 kcal/mol (3206.6748 without restraints) Performing minimization step: 4710. Total energy = 3208.3592 kcal/mol (3206.5801 without restraints) Performing minimization step: 4711. Total energy = 3208.2643 kcal/mol (3206.4854 without restraints) Performing minimization step: 4712. Total energy = 3208.1696 kcal/mol (3206.3910 without restraints) Performing minimization step: 4713. Total energy = 3208.0754 kcal/mol (3206.2969 without restraints) Performing minimization step: 4714. Total energy = 3207.9807 kcal/mol (3206.2025 without restraints) Performing minimization step: 4715. Total energy = 3207.8861 kcal/mol (3206.1081 without restraints) Performing minimization step: 4716. Total energy = 3207.7918 kcal/mol (3206.0140 without restraints) Performing minimization step: 4717. Total energy = 3207.6972 kcal/mol (3205.9197 without restraints) Performing minimization step: 4718. Total energy = 3207.6027 kcal/mol (3205.8254 without restraints) Performing minimization step: 4719. Total energy = 3207.5082 kcal/mol (3205.7311 without restraints) Performing minimization step: 4720. Total energy = 3207.4136 kcal/mol (3205.6367 without restraints) Performing minimization step: 4721. Total energy = 3207.3192 kcal/mol (3205.5426 without restraints) Performing minimization step: 4722. Total energy = 3207.2249 kcal/mol (3205.4485 without restraints) Performing minimization step: 4723. Total energy = 3207.1305 kcal/mol (3205.3542 without restraints) Performing minimization step: 4724. Total energy = 3207.0361 kcal/mol (3205.2602 without restraints) Performing minimization step: 4725. Total energy = 3206.9417 kcal/mol (3205.1659 without restraints) Performing minimization step: 4726. Total energy = 3206.8478 kcal/mol (3205.0722 without restraints) Performing minimization step: 4727. Total energy = 3206.7539 kcal/mol (3204.9785 without restraints) Performing minimization step: 4728. Total energy = 3206.6599 kcal/mol (3204.8847 without restraints) Performing minimization step: 4729. Total energy = 3206.5658 kcal/mol (3204.7909 without restraints) Performing minimization step: 4730. Total energy = 3206.4718 kcal/mol (3204.6971 without restraints) Performing minimization step: 4731. Total energy = 3206.3778 kcal/mol (3204.6033 without restraints) Performing minimization step: 4732. Total energy = 3206.2840 kcal/mol (3204.5098 without restraints) Performing minimization step: 4733. Total energy = 3206.1901 kcal/mol (3204.4161 without restraints) Performing minimization step: 4734. Total energy = 3206.0963 kcal/mol (3204.3225 without restraints) Performing minimization step: 4735. Total energy = 3206.0026 kcal/mol (3204.2291 without restraints) Performing minimization step: 4736. Total energy = 3205.9090 kcal/mol (3204.1356 without restraints) Performing minimization step: 4737. Total energy = 3205.8152 kcal/mol (3204.0421 without restraints) Performing minimization step: 4738. Total energy = 3205.7215 kcal/mol (3203.9487 without restraints) Performing minimization step: 4739. Total energy = 3205.6277 kcal/mol (3203.8550 without restraints) Performing minimization step: 4740. Total energy = 3205.5343 kcal/mol (3203.7618 without restraints) Performing minimization step: 4741. Total energy = 3205.4406 kcal/mol (3203.6683 without restraints) Performing minimization step: 4742. Total energy = 3205.3474 kcal/mol (3203.5753 without restraints) Performing minimization step: 4743. Total energy = 3205.2541 kcal/mol (3203.4823 without restraints) Performing minimization step: 4744. Total energy = 3205.1607 kcal/mol (3203.3891 without restraints) Performing minimization step: 4745. Total energy = 3205.0673 kcal/mol (3203.2957 without restraints) Performing minimization step: 4746. Total energy = 3204.9735 kcal/mol (3203.2022 without restraints) Performing minimization step: 4747. Total energy = 3204.8801 kcal/mol (3203.1091 without restraints) Performing minimization step: 4748. Total energy = 3204.7868 kcal/mol (3203.0161 without restraints) Performing minimization step: 4749. Total energy = 3204.6936 kcal/mol (3202.9231 without restraints) Performing minimization step: 4750. Total energy = 3204.6008 kcal/mol (3202.8306 without restraints) Performing minimization step: 4751. Total energy = 3204.5077 kcal/mol (3202.7376 without restraints) Performing minimization step: 4752. Total energy = 3204.4146 kcal/mol (3202.6447 without restraints) Performing minimization step: 4753. Total energy = 3204.3215 kcal/mol (3202.5518 without restraints) Performing minimization step: 4754. Total energy = 3204.2288 kcal/mol (3202.4594 without restraints) Performing minimization step: 4755. Total energy = 3204.1358 kcal/mol (3202.3666 without restraints) Performing minimization step: 4756. Total energy = 3204.0427 kcal/mol (3202.2736 without restraints) Performing minimization step: 4757. Total energy = 3203.9493 kcal/mol (3202.1805 without restraints) Performing minimization step: 4758. Total energy = 3203.8564 kcal/mol (3202.0879 without restraints) Performing minimization step: 4759. Total energy = 3203.7638 kcal/mol (3201.9954 without restraints) Performing minimization step: 4760. Total energy = 3203.6710 kcal/mol (3201.9029 without restraints) Performing minimization step: 4761. Total energy = 3203.5781 kcal/mol (3201.8103 without restraints) Performing minimization step: 4762. Total energy = 3203.4857 kcal/mol (3201.7180 without restraints) Performing minimization step: 4763. Total energy = 3203.3930 kcal/mol (3201.6255 without restraints) Performing minimization step: 4764. Total energy = 3203.3006 kcal/mol (3201.5334 without restraints) Performing minimization step: 4765. Total energy = 3203.2083 kcal/mol (3201.4412 without restraints) Performing minimization step: 4766. Total energy = 3203.1157 kcal/mol (3201.3489 without restraints) Performing minimization step: 4767. Total energy = 3203.0230 kcal/mol (3201.2563 without restraints) Performing minimization step: 4768. Total energy = 3202.9309 kcal/mol (3201.1645 without restraints) Performing minimization step: 4769. Total energy = 3202.8384 kcal/mol (3201.0723 without restraints) Performing minimization step: 4770. Total energy = 3202.7460 kcal/mol (3200.9801 without restraints) Performing minimization step: 4771. Total energy = 3202.6536 kcal/mol (3200.8879 without restraints) Performing minimization step: 4772. Total energy = 3202.5615 kcal/mol (3200.7960 without restraints) Performing minimization step: 4773. Total energy = 3202.4693 kcal/mol (3200.7040 without restraints) Performing minimization step: 4774. Total energy = 3202.3770 kcal/mol (3200.6120 without restraints) Performing minimization step: 4775. Total energy = 3202.2848 kcal/mol (3200.5200 without restraints) Performing minimization step: 4776. Total energy = 3202.1928 kcal/mol (3200.4282 without restraints) Performing minimization step: 4777. Total energy = 3202.1008 kcal/mol (3200.3365 without restraints) Performing minimization step: 4778. Total energy = 3202.0088 kcal/mol (3200.2447 without restraints) Performing minimization step: 4779. Total energy = 3201.9168 kcal/mol (3200.1528 without restraints) Performing minimization step: 4780. Total energy = 3201.8250 kcal/mol (3200.0613 without restraints) Performing minimization step: 4781. Total energy = 3201.7333 kcal/mol (3199.9697 without restraints) Performing minimization step: 4782. Total energy = 3201.6413 kcal/mol (3199.8780 without restraints) Performing minimization step: 4783. Total energy = 3201.5492 kcal/mol (3199.7861 without restraints) Performing minimization step: 4784. Total energy = 3201.4575 kcal/mol (3199.6947 without restraints) Performing minimization step: 4785. Total energy = 3201.3656 kcal/mol (3199.6030 without restraints) Performing minimization step: 4786. Total energy = 3201.2737 kcal/mol (3199.5112 without restraints) Performing minimization step: 4787. Total energy = 3201.1821 kcal/mol (3199.4199 without restraints) Performing minimization step: 4788. Total energy = 3201.0902 kcal/mol (3199.3282 without restraints) Performing minimization step: 4789. Total energy = 3200.9986 kcal/mol (3199.2367 without restraints) Performing minimization step: 4790. Total energy = 3200.9070 kcal/mol (3199.1453 without restraints) Performing minimization step: 4791. Total energy = 3200.8154 kcal/mol (3199.0540 without restraints) Performing minimization step: 4792. Total energy = 3200.7240 kcal/mol (3198.9629 without restraints) Performing minimization step: 4793. Total energy = 3200.6325 kcal/mol (3198.8716 without restraints) Performing minimization step: 4794. Total energy = 3200.5412 kcal/mol (3198.7804 without restraints) Performing minimization step: 4795. Total energy = 3200.4497 kcal/mol (3198.6892 without restraints) Performing minimization step: 4796. Total energy = 3200.3584 kcal/mol (3198.5981 without restraints) Performing minimization step: 4797. Total energy = 3200.2669 kcal/mol (3198.5067 without restraints) Performing minimization step: 4798. Total energy = 3200.1755 kcal/mol (3198.4156 without restraints) Performing minimization step: 4799. Total energy = 3200.0845 kcal/mol (3198.3249 without restraints) Performing minimization step: 4800. Total energy = 3199.9932 kcal/mol (3198.2336 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 3199.9019 kcal/mol (3198.1427 without restraints) Performing minimization step: 4802. Total energy = 3199.8105 kcal/mol (3198.0515 without restraints) Performing minimization step: 4803. Total energy = 3199.7191 kcal/mol (3197.9602 without restraints) Performing minimization step: 4804. Total energy = 3199.6279 kcal/mol (3197.8693 without restraints) Performing minimization step: 4805. Total energy = 3199.5370 kcal/mol (3197.7787 without restraints) Performing minimization step: 4806. Total energy = 3199.4463 kcal/mol (3197.6881 without restraints) Performing minimization step: 4807. Total energy = 3199.3549 kcal/mol (3197.5969 without restraints) Performing minimization step: 4808. Total energy = 3199.2639 kcal/mol (3197.5062 without restraints) Performing minimization step: 4809. Total energy = 3199.1730 kcal/mol (3197.4154 without restraints) Performing minimization step: 4810. Total energy = 3199.0823 kcal/mol (3197.3250 without restraints) Performing minimization step: 4811. Total energy = 3198.9917 kcal/mol (3197.2346 without restraints) Performing minimization step: 4812. Total energy = 3198.9010 kcal/mol (3197.1441 without restraints) Performing minimization step: 4813. Total energy = 3198.8104 kcal/mol (3197.0538 without restraints) Performing minimization step: 4814. Total energy = 3198.7198 kcal/mol (3196.9634 without restraints) Performing minimization step: 4815. Total energy = 3198.6296 kcal/mol (3196.8735 without restraints) Performing minimization step: 4816. Total energy = 3198.5391 kcal/mol (3196.7831 without restraints) Performing minimization step: 4817. Total energy = 3198.4486 kcal/mol (3196.6928 without restraints) Performing minimization step: 4818. Total energy = 3198.3581 kcal/mol (3196.6025 without restraints) Performing minimization step: 4819. Total energy = 3198.2676 kcal/mol (3196.5122 without restraints) Performing minimization step: 4820. Total energy = 3198.1771 kcal/mol (3196.4219 without restraints) Performing minimization step: 4821. Total energy = 3198.0867 kcal/mol (3196.3317 without restraints) Performing minimization step: 4822. Total energy = 3197.9968 kcal/mol (3196.2421 without restraints) Performing minimization step: 4823. Total energy = 3197.9065 kcal/mol (3196.1520 without restraints) Performing minimization step: 4824. Total energy = 3197.8162 kcal/mol (3196.0619 without restraints) Performing minimization step: 4825. Total energy = 3197.7261 kcal/mol (3195.9720 without restraints) Performing minimization step: 4826. Total energy = 3197.6358 kcal/mol (3195.8819 without restraints) Performing minimization step: 4827. Total energy = 3197.5459 kcal/mol (3195.7921 without restraints) Performing minimization step: 4828. Total energy = 3197.4556 kcal/mol (3195.7021 without restraints) Performing minimization step: 4829. Total energy = 3197.3654 kcal/mol (3195.6122 without restraints) Performing minimization step: 4830. Total energy = 3197.2753 kcal/mol (3195.5223 without restraints) Performing minimization step: 4831. Total energy = 3197.1850 kcal/mol (3195.4322 without restraints) Performing minimization step: 4832. Total energy = 3197.0950 kcal/mol (3195.3423 without restraints) Performing minimization step: 4833. Total energy = 3197.0050 kcal/mol (3195.2526 without restraints) Performing minimization step: 4834. Total energy = 3196.9151 kcal/mol (3195.1629 without restraints) Performing minimization step: 4835. Total energy = 3196.8251 kcal/mol (3195.0730 without restraints) Performing minimization step: 4836. Total energy = 3196.7351 kcal/mol (3194.9832 without restraints) Performing minimization step: 4837. Total energy = 3196.6449 kcal/mol (3194.8934 without restraints) Performing minimization step: 4838. Total energy = 3196.5551 kcal/mol (3194.8037 without restraints) Performing minimization step: 4839. Total energy = 3196.4652 kcal/mol (3194.7140 without restraints) Performing minimization step: 4840. Total energy = 3196.3755 kcal/mol (3194.6246 without restraints) Performing minimization step: 4841. Total energy = 3196.2858 kcal/mol (3194.5351 without restraints) Performing minimization step: 4842. Total energy = 3196.1964 kcal/mol (3194.4460 without restraints) Performing minimization step: 4843. Total energy = 3196.1069 kcal/mol (3194.3566 without restraints) Performing minimization step: 4844. Total energy = 3196.0173 kcal/mol (3194.2672 without restraints) Performing minimization step: 4845. Total energy = 3195.9277 kcal/mol (3194.1778 without restraints) Performing minimization step: 4846. Total energy = 3195.8381 kcal/mol (3194.0884 without restraints) Performing minimization step: 4847. Total energy = 3195.7485 kcal/mol (3193.9990 without restraints) Performing minimization step: 4848. Total energy = 3195.6590 kcal/mol (3193.9098 without restraints) Performing minimization step: 4849. Total energy = 3195.5698 kcal/mol (3193.8208 without restraints) Performing minimization step: 4850. Total energy = 3195.4804 kcal/mol (3193.7316 without restraints) Performing minimization step: 4851. Total energy = 3195.3914 kcal/mol (3193.6427 without restraints) Performing minimization step: 4852. Total energy = 3195.3020 kcal/mol (3193.5536 without restraints) Performing minimization step: 4853. Total energy = 3195.2124 kcal/mol (3193.4641 without restraints) Performing minimization step: 4854. Total energy = 3195.1236 kcal/mol (3193.3756 without restraints) Performing minimization step: 4855. Total energy = 3195.0344 kcal/mol (3193.2866 without restraints) Performing minimization step: 4856. Total energy = 3194.9450 kcal/mol (3193.1974 without restraints) Performing minimization step: 4857. Total energy = 3194.8558 kcal/mol (3193.1084 without restraints) Performing minimization step: 4858. Total energy = 3194.7667 kcal/mol (3193.0197 without restraints) Performing minimization step: 4859. Total energy = 3194.6778 kcal/mol (3192.9310 without restraints) Performing minimization step: 4860. Total energy = 3194.5890 kcal/mol (3192.8422 without restraints) Performing minimization step: 4861. Total energy = 3194.4999 kcal/mol (3192.7533 without restraints) Performing minimization step: 4862. Total energy = 3194.4111 kcal/mol (3192.6648 without restraints) Performing minimization step: 4863. Total energy = 3194.3221 kcal/mol (3192.5761 without restraints) Performing minimization step: 4864. Total energy = 3194.2334 kcal/mol (3192.4875 without restraints) Performing minimization step: 4865. Total energy = 3194.1445 kcal/mol (3192.3989 without restraints) Performing minimization step: 4866. Total energy = 3194.0554 kcal/mol (3192.3100 without restraints) Performing minimization step: 4867. Total energy = 3193.9670 kcal/mol (3192.2217 without restraints) Performing minimization step: 4868. Total energy = 3193.8785 kcal/mol (3192.1334 without restraints) Performing minimization step: 4869. Total energy = 3193.7895 kcal/mol (3192.0446 without restraints) Performing minimization step: 4870. Total energy = 3193.7007 kcal/mol (3191.9560 without restraints) Performing minimization step: 4871. Total energy = 3193.6120 kcal/mol (3191.8676 without restraints) Performing minimization step: 4872. Total energy = 3193.5235 kcal/mol (3191.7793 without restraints) Performing minimization step: 4873. Total energy = 3193.4349 kcal/mol (3191.6909 without restraints) Performing minimization step: 4874. Total energy = 3193.3467 kcal/mol (3191.6029 without restraints) Performing minimization step: 4875. Total energy = 3193.2580 kcal/mol (3191.5143 without restraints) Performing minimization step: 4876. Total energy = 3193.1691 kcal/mol (3191.4257 without restraints) Performing minimization step: 4877. Total energy = 3193.0810 kcal/mol (3191.3378 without restraints) Performing minimization step: 4878. Total energy = 3192.9925 kcal/mol (3191.2495 without restraints) Performing minimization step: 4879. Total energy = 3192.9039 kcal/mol (3191.1610 without restraints) Performing minimization step: 4880. Total energy = 3192.8154 kcal/mol (3191.0730 without restraints) Performing minimization step: 4881. Total energy = 3192.7280 kcal/mol (3190.9856 without restraints) Performing minimization step: 4882. Total energy = 3192.6396 kcal/mol (3190.8974 without restraints) Performing minimization step: 4883. Total energy = 3192.5510 kcal/mol (3190.8090 without restraints) Performing minimization step: 4884. Total energy = 3192.4626 kcal/mol (3190.7209 without restraints) Performing minimization step: 4885. Total energy = 3192.3745 kcal/mol (3190.6328 without restraints) Performing minimization step: 4886. Total energy = 3192.2857 kcal/mol (3190.5443 without restraints) Performing minimization step: 4887. Total energy = 3192.1975 kcal/mol (3190.4564 without restraints) Performing minimization step: 4888. Total energy = 3192.1097 kcal/mol (3190.3687 without restraints) Performing minimization step: 4889. Total energy = 3192.0214 kcal/mol (3190.2807 without restraints) Performing minimization step: 4890. Total energy = 3191.9331 kcal/mol (3190.1926 without restraints) Performing minimization step: 4891. Total energy = 3191.8448 kcal/mol (3190.1045 without restraints) Performing minimization step: 4892. Total energy = 3191.7568 kcal/mol (3190.0167 without restraints) Performing minimization step: 4893. Total energy = 3191.6688 kcal/mol (3189.9289 without restraints) Performing minimization step: 4894. Total energy = 3191.5812 kcal/mol (3189.8415 without restraints) Performing minimization step: 4895. Total energy = 3191.4930 kcal/mol (3189.7534 without restraints) Performing minimization step: 4896. Total energy = 3191.4052 kcal/mol (3189.6659 without restraints) Performing minimization step: 4897. Total energy = 3191.3171 kcal/mol (3189.5779 without restraints) Performing minimization step: 4898. Total energy = 3191.2292 kcal/mol (3189.4903 without restraints) Performing minimization step: 4899. Total energy = 3191.1413 kcal/mol (3189.4027 without restraints) Performing minimization step: 4900. Total energy = 3191.0535 kcal/mol (3189.3150 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 3190.9657 kcal/mol (3189.2275 without restraints) Performing minimization step: 4902. Total energy = 3190.8780 kcal/mol (3189.1399 without restraints) Performing minimization step: 4903. Total energy = 3190.7901 kcal/mol (3189.0523 without restraints) Performing minimization step: 4904. Total energy = 3190.7025 kcal/mol (3188.9648 without restraints) Performing minimization step: 4905. Total energy = 3190.6148 kcal/mol (3188.8774 without restraints) Performing minimization step: 4906. Total energy = 3190.5272 kcal/mol (3188.7900 without restraints) Performing minimization step: 4907. Total energy = 3190.4396 kcal/mol (3188.7026 without restraints) Performing minimization step: 4908. Total energy = 3190.3522 kcal/mol (3188.6154 without restraints) Performing minimization step: 4909. Total energy = 3190.2640 kcal/mol (3188.5274 without restraints) Performing minimization step: 4910. Total energy = 3190.1766 kcal/mol (3188.4402 without restraints) Performing minimization step: 4911. Total energy = 3190.0889 kcal/mol (3188.3527 without restraints) Performing minimization step: 4912. Total energy = 3190.0017 kcal/mol (3188.2657 without restraints) Performing minimization step: 4913. Total energy = 3189.9143 kcal/mol (3188.1785 without restraints) Performing minimization step: 4914. Total energy = 3189.8267 kcal/mol (3188.0911 without restraints) Performing minimization step: 4915. Total energy = 3189.7394 kcal/mol (3188.0040 without restraints) Performing minimization step: 4916. Total energy = 3189.6515 kcal/mol (3187.9163 without restraints) Performing minimization step: 4917. Total energy = 3189.5639 kcal/mol (3187.8288 without restraints) Performing minimization step: 4918. Total energy = 3189.4767 kcal/mol (3187.7419 without restraints) Performing minimization step: 4919. Total energy = 3189.3895 kcal/mol (3187.6549 without restraints) Performing minimization step: 4920. Total energy = 3189.3022 kcal/mol (3187.5678 without restraints) Performing minimization step: 4921. Total energy = 3189.2146 kcal/mol (3187.4806 without restraints) Performing minimization step: 4922. Total energy = 3189.1277 kcal/mol (3187.3939 without restraints) Performing minimization step: 4923. Total energy = 3189.0407 kcal/mol (3187.3069 without restraints) Performing minimization step: 4924. Total energy = 3188.9534 kcal/mol (3187.2199 without restraints) Performing minimization step: 4925. Total energy = 3188.8662 kcal/mol (3187.1329 without restraints) Performing minimization step: 4926. Total energy = 3188.7790 kcal/mol (3187.0459 without restraints) Performing minimization step: 4927. Total energy = 3188.6918 kcal/mol (3186.9589 without restraints) Performing minimization step: 4928. Total energy = 3188.6051 kcal/mol (3186.8724 without restraints) Performing minimization step: 4929. Total energy = 3188.5185 kcal/mol (3186.7860 without restraints) Performing minimization step: 4930. Total energy = 3188.4316 kcal/mol (3186.6993 without restraints) Performing minimization step: 4931. Total energy = 3188.3447 kcal/mol (3186.6126 without restraints) Performing minimization step: 4932. Total energy = 3188.2582 kcal/mol (3186.5264 without restraints) Performing minimization step: 4933. Total energy = 3188.1715 kcal/mol (3186.4397 without restraints) Performing minimization step: 4934. Total energy = 3188.0848 kcal/mol (3186.3534 without restraints) Performing minimization step: 4935. Total energy = 3187.9975 kcal/mol (3186.2662 without restraints) Performing minimization step: 4936. Total energy = 3187.9105 kcal/mol (3186.1792 without restraints) Performing minimization step: 4937. Total energy = 3187.8237 kcal/mol (3186.0928 without restraints) Performing minimization step: 4938. Total energy = 3187.7370 kcal/mol (3186.0063 without restraints) Performing minimization step: 4939. Total energy = 3187.6507 kcal/mol (3185.9200 without restraints) Performing minimization step: 4940. Total energy = 3187.5637 kcal/mol (3185.8334 without restraints) Performing minimization step: 4941. Total energy = 3187.4772 kcal/mol (3185.7471 without restraints) Performing minimization step: 4942. Total energy = 3187.3908 kcal/mol (3185.6609 without restraints) Performing minimization step: 4943. Total energy = 3187.3043 kcal/mol (3185.5746 without restraints) Performing minimization step: 4944. Total energy = 3187.2177 kcal/mol (3185.4879 without restraints) Performing minimization step: 4945. Total energy = 3187.1308 kcal/mol (3185.4014 without restraints) Performing minimization step: 4946. Total energy = 3187.0443 kcal/mol (3185.3153 without restraints) Performing minimization step: 4947. Total energy = 3186.9583 kcal/mol (3185.2294 without restraints) Performing minimization step: 4948. Total energy = 3186.8717 kcal/mol (3185.1430 without restraints) Performing minimization step: 4949. Total energy = 3186.7850 kcal/mol (3185.0565 without restraints) Performing minimization step: 4950. Total energy = 3186.6989 kcal/mol (3184.9706 without restraints) Performing minimization step: 4951. Total energy = 3186.6129 kcal/mol (3184.8848 without restraints) Performing minimization step: 4952. Total energy = 3186.5266 kcal/mol (3184.7988 without restraints) Performing minimization step: 4953. Total energy = 3186.4406 kcal/mol (3184.7129 without restraints) Performing minimization step: 4954. Total energy = 3186.3544 kcal/mol (3184.6269 without restraints) Performing minimization step: 4955. Total energy = 3186.2682 kcal/mol (3184.5409 without restraints) Performing minimization step: 4956. Total energy = 3186.1821 kcal/mol (3184.4550 without restraints) Performing minimization step: 4957. Total energy = 3186.0959 kcal/mol (3184.3688 without restraints) Performing minimization step: 4958. Total energy = 3186.0097 kcal/mol (3184.2830 without restraints) Performing minimization step: 4959. Total energy = 3185.9236 kcal/mol (3184.1971 without restraints) Performing minimization step: 4960. Total energy = 3185.8376 kcal/mol (3184.1113 without restraints) Performing minimization step: 4961. Total energy = 3185.7516 kcal/mol (3184.0255 without restraints) Performing minimization step: 4962. Total energy = 3185.6656 kcal/mol (3183.9397 without restraints) Performing minimization step: 4963. Total energy = 3185.5797 kcal/mol (3183.8540 without restraints) Performing minimization step: 4964. Total energy = 3185.4938 kcal/mol (3183.7681 without restraints) Performing minimization step: 4965. Total energy = 3185.4078 kcal/mol (3183.6825 without restraints) Performing minimization step: 4966. Total energy = 3185.3220 kcal/mol (3183.5969 without restraints) Performing minimization step: 4967. Total energy = 3185.2365 kcal/mol (3183.5117 without restraints) Performing minimization step: 4968. Total energy = 3185.1509 kcal/mol (3183.4262 without restraints) Performing minimization step: 4969. Total energy = 3185.0649 kcal/mol (3183.3404 without restraints) Performing minimization step: 4970. Total energy = 3184.9792 kcal/mol (3183.2549 without restraints) Performing minimization step: 4971. Total energy = 3184.8934 kcal/mol (3183.1693 without restraints) Performing minimization step: 4972. Total energy = 3184.8078 kcal/mol (3183.0839 without restraints) Performing minimization step: 4973. Total energy = 3184.7222 kcal/mol (3182.9985 without restraints) Performing minimization step: 4974. Total energy = 3184.6368 kcal/mol (3182.9134 without restraints) Performing minimization step: 4975. Total energy = 3184.5510 kcal/mol (3182.8277 without restraints) Performing minimization step: 4976. Total energy = 3184.4655 kcal/mol (3182.7424 without restraints) Performing minimization step: 4977. Total energy = 3184.3801 kcal/mol (3182.6572 without restraints) Performing minimization step: 4978. Total energy = 3184.2948 kcal/mol (3182.5721 without restraints) Performing minimization step: 4979. Total energy = 3184.2095 kcal/mol (3182.4869 without restraints) Performing minimization step: 4980. Total energy = 3184.1245 kcal/mol (3182.4022 without restraints) Performing minimization step: 4981. Total energy = 3184.0392 kcal/mol (3182.3171 without restraints) Performing minimization step: 4982. Total energy = 3183.9542 kcal/mol (3182.2323 without restraints) Performing minimization step: 4983. Total energy = 3183.8687 kcal/mol (3182.1470 without restraints) Performing minimization step: 4984. Total energy = 3183.7834 kcal/mol (3182.0619 without restraints) Performing minimization step: 4985. Total energy = 3183.6978 kcal/mol (3181.9764 without restraints) Performing minimization step: 4986. Total energy = 3183.6124 kcal/mol (3181.8914 without restraints) Performing minimization step: 4987. Total energy = 3183.5272 kcal/mol (3181.8062 without restraints) Performing minimization step: 4988. Total energy = 3183.4421 kcal/mol (3181.7213 without restraints) Performing minimization step: 4989. Total energy = 3183.3568 kcal/mol (3181.6363 without restraints) Performing minimization step: 4990. Total energy = 3183.2715 kcal/mol (3181.5512 without restraints) Performing minimization step: 4991. Total energy = 3183.1867 kcal/mol (3181.4666 without restraints) Performing minimization step: 4992. Total energy = 3183.1017 kcal/mol (3181.3818 without restraints) Performing minimization step: 4993. Total energy = 3183.0168 kcal/mol (3181.2970 without restraints) Performing minimization step: 4994. Total energy = 3182.9320 kcal/mol (3181.2125 without restraints) Performing minimization step: 4995. Total energy = 3182.8470 kcal/mol (3181.1276 without restraints) Performing minimization step: 4996. Total energy = 3182.7622 kcal/mol (3181.0430 without restraints) Performing minimization step: 4997. Total energy = 3182.6771 kcal/mol (3180.9582 without restraints) Performing minimization step: 4998. Total energy = 3182.5924 kcal/mol (3180.8737 without restraints) Performing minimization step: 4999. Total energy = 3182.5077 kcal/mol (3180.7892 without restraints) Performing minimization step: 5000. Total energy = 3182.4230 kcal/mol (3180.7047 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/4be8015a/tmp/optimalSS_refx/optimalSS_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to optimalSS_refx.pdb DONE!