==> af0_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 19:22:26 2026 ATOM 1 P A A 1 -0.811 -21.893 19.850 1.00 19.29 P ATOM 2 OP1 A A 1 -1.637 -21.303 20.927 1.00 18.38 O ATOM 3 OP2 A A 1 -0.329 -20.832 18.939 1.00 18.73 O ATOM 4 O5' A A 1 0.429 -22.688 20.470 1.00 19.11 O ATOM 5 C5' A A 1 0.263 -23.667 21.516 1.00 19.78 C ATOM 6 C4' A A 1 1.601 -24.348 21.818 1.00 20.23 C ==> af1_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 19:22:26 2026 ATOM 1 P A A 1 -39.076 28.235 -44.921 1.00 19.59 P ATOM 2 OP1 A A 1 -38.578 26.915 -44.478 1.00 18.65 O ATOM 3 OP2 A A 1 -40.539 28.294 -44.719 1.00 18.99 O ATOM 4 O5' A A 1 -38.362 29.401 -44.092 1.00 19.43 O ATOM 5 C5' A A 1 -36.970 29.732 -44.278 1.00 20.14 C ATOM 6 C4' A A 1 -36.615 30.985 -43.475 1.00 20.63 C ==> boltz3_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 19:22:27 2026 ATOM 1 P A A 1 0.460 -3.040 23.941 1.00 24.64 P ATOM 2 OP1 A A 1 -0.594 -3.000 22.903 1.00 24.64 O ATOM 3 OP2 A A 1 0.967 -1.672 24.191 1.00 24.64 O ATOM 4 O5' A A 1 -0.111 -3.669 25.295 1.00 24.64 O ATOM 5 C5' A A 1 -0.718 -4.978 25.333 1.00 24.64 C ATOM 6 C4' A A 1 -0.960 -5.409 26.782 1.00 24.64 C ==> farfar4_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 19:22:27 2026 REMARK 250 Fixed atoms/residues: REMARK 250 - add OP3 at the beginning of the chain in chain: A residue # 1 ATOM 1 P A A 1 0.140 -0.211 -0.068 1.00 11.89 P ATOM 2 OP1 A A 1 -0.413 0.670 -1.125 1.00 14.35 O ATOM 3 OP2 A A 1 -0.155 -1.653 -0.066 1.00 12.68 O ATOM 4 O5' A A 1 1.721 -0.087 0.002 1.00 10.34 O ==> simrna_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Sun Jan 18 19:22:28 2026 ATOM 1 P A A 1 -56.405 51.509 65.996 1.00 0.00 P ATOM 2 OP1 A A 1 -56.666 51.495 67.453 1.00 0.00 O ATOM 3 OP2 A A 1 -54.952 51.436 65.732 1.00 0.00 O ATOM 4 O5' A A 1 -57.159 50.290 65.285 1.00 0.00 O ATOM 5 C5' A A 1 -58.541 50.011 65.581 1.00 0.00 C ATOM 6 C4' A A 1 -59.086 48.938 64.659 1.00 0.00 C DONE!