============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out.pdb ============================================================================= Atom's 1800 C4 residue renamed to RA3 Atom's 1799 N3 residue renamed to RA3 Atom's 1798 C2 residue renamed to RA3 Atom's 1797 N1 residue renamed to RA3 Atom's 1796 N6 residue renamed to RA3 Atom's 1795 C6 residue renamed to RA3 Atom's 1794 C5 residue renamed to RA3 Atom's 1793 N7 residue renamed to RA3 Atom's 1792 C8 residue renamed to RA3 Atom's 1791 N9 residue renamed to RA3 Atom's 1790 C1' residue renamed to RA3 Atom's 1789 O2' residue renamed to RA3 Atom's 1788 C2' residue renamed to RA3 Atom's 1787 O3' residue renamed to RA3 Atom's 1786 C3' residue renamed to RA3 Atom's 1785 O4' residue renamed to RA3 Atom's 1784 C4' residue renamed to RA3 Atom's 1783 C5' residue renamed to RA3 Atom's 1782 O5' residue renamed to RA3 Atom's 1781 OP2 residue renamed to RA3 Atom's 1780 OP1 residue renamed to RA3 Atom's 1779 P residue renamed to RA3 Missing atom added: ATOM 24 H5'1 G B 1 1.936 -80.156 19.235 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 1 3.163 -78.776 19.380 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 1 0.990 -78.114 18.805 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 1 1.648 -77.430 21.721 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 1 -1.900 -78.261 20.645 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 1 -0.434 -76.242 21.840 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 1 -0.201 -75.963 19.317 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 1 0.562 -80.282 22.442 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 1 -4.529 -78.128 26.525 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 1 -4.782 -76.028 23.539 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 1 -5.020 -76.211 25.185 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 2 0.439 -73.859 20.470 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 2 1.640 -72.543 20.979 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 2 -0.493 -71.964 21.533 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 2 1.271 -72.730 23.941 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 2 -2.493 -73.236 23.997 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 2 -0.473 -71.945 25.386 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 2 -1.141 -70.436 23.450 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 2 0.332 -75.573 23.597 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 2 -3.004 -76.407 29.547 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 2 -4.168 -73.177 28.282 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 2 -3.858 -74.180 29.585 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 3 2.963 -70.249 26.991 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 3 1.654 -71.552 26.843 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 3 1.193 -71.037 28.666 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 3 2.046 -71.107 29.522 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 3 -1.449 -72.422 28.964 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 3 0.197 -71.459 30.972 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 3 -0.867 -69.449 29.827 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 3 1.628 -73.390 27.709 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 3 2.629 -77.679 29.449 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 3 1.434 -77.865 30.660 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 3 3.069 -75.686 27.817 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 4 0.140 -68.707 32.097 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 4 1.374 -67.832 33.169 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 4 -0.212 -68.801 34.452 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 4 2.571 -70.085 34.618 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 4 -0.556 -72.147 35.190 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 4 1.793 -71.410 36.452 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 4 0.107 -69.543 36.845 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 4 1.591 -71.735 32.477 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 4 3.688 -75.911 31.690 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 4 3.254 -76.801 33.086 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 4 3.100 -73.454 31.016 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 5 1.941 -69.413 38.481 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 5 3.421 -68.619 39.264 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 5 2.692 -70.438 40.456 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 5 5.331 -70.925 38.961 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 5 2.899 -73.764 39.660 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 5 5.525 -73.015 40.132 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 5 4.099 -71.917 41.932 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 5 3.869 -71.790 36.895 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 5 5.150 -76.834 36.614 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 5 4.717 -72.668 34.715 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 6 6.539 -72.053 42.465 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 6 8.161 -71.271 42.904 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 6 8.165 -73.560 43.190 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 6 9.862 -72.630 40.834 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 6 8.130 -76.038 40.828 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 6 10.661 -74.891 40.616 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 6 10.127 -75.114 43.089 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 6 7.589 -72.871 38.992 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 6 8.042 -74.701 34.455 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 6 8.422 -76.261 33.874 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 6 9.425 -79.249 37.439 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 7 11.878 -73.700 44.617 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 7 11.183 -72.123 45.300 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 7 12.006 -72.747 46.984 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 7 12.736 -70.071 45.572 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 7 15.100 -71.781 47.990 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 7 13.810 -69.377 47.594 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 7 12.177 -70.936 48.778 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 7 14.993 -71.704 44.323 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 7 19.042 -69.122 43.424 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 7 20.135 -68.287 44.437 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 7 18.785 -68.522 49.001 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 8 10.510 -66.290 48.311 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 8 12.198 -66.223 47.548 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 8 12.808 -65.126 48.749 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 8 13.091 -64.758 47.005 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 8 15.964 -66.800 48.396 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 8 15.369 -64.245 47.493 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 8 14.695 -64.353 49.936 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 8 13.601 -67.855 45.889 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 8 16.323 -67.452 41.830 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 8 17.844 -66.736 41.525 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 8 19.659 -64.768 45.464 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 9 14.607 -61.799 48.212 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 9 13.586 -60.260 48.045 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 9 15.790 -60.228 47.114 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 9 13.687 -60.467 44.923 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 9 17.076 -62.138 44.537 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 9 15.429 -60.279 43.292 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 9 16.732 -59.046 45.087 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 9 13.705 -63.462 45.223 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 9 13.153 -66.153 41.154 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 9 14.085 -66.298 39.730 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 9 17.897 -63.445 39.849 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 10 15.338 -57.570 43.055 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 10 14.062 -56.294 42.637 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 10 15.241 -57.146 40.790 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 10 12.355 -57.982 40.861 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 10 14.945 -60.377 39.480 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 10 12.642 -59.031 38.736 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 10 14.588 -57.431 38.406 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 10 12.859 -60.176 42.564 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 10 11.372 -65.602 38.619 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 10 13.498 -63.489 36.525 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 10 12.277 -64.627 36.640 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 11 8.999 -55.714 38.776 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 11 9.005 -57.049 40.063 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 11 7.600 -57.053 37.993 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 11 9.917 -58.874 37.464 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 11 8.679 -56.593 34.694 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 11 9.053 -59.285 35.275 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 11 6.800 -58.618 36.232 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 11 11.429 -56.610 36.871 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 11 15.309 -56.854 34.168 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 11 14.652 -57.173 32.620 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 11 14.111 -56.519 36.464 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 12 8.244 -63.595 37.050 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 12 9.796 -62.908 36.305 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 12 9.622 -64.001 34.888 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 12 11.129 -64.008 35.633 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 12 10.980 -61.459 32.831 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 12 12.149 -63.893 33.485 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 12 9.841 -64.385 32.550 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 12 11.281 -60.756 36.342 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 12 15.961 -59.331 36.544 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 12 17.215 -59.309 35.385 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 12 15.826 -61.302 31.292 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 13 12.926 -66.682 35.831 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 13 12.494 -66.306 34.069 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 13 14.339 -67.749 34.375 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 13 13.306 -69.005 36.635 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 13 16.380 -69.001 35.008 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 13 14.587 -69.593 37.384 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 13 14.542 -70.923 36.946 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 13 18.093 -68.428 34.955 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 13 16.790 -64.388 37.983 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 13 19.914 -66.912 35.746 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 14 11.247 -71.983 37.309 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 14 13.098 -71.956 37.399 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 14 12.517 -73.390 38.895 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 14 14.161 -74.286 36.474 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 14 11.867 -76.730 38.198 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 14 14.521 -76.390 37.544 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 14 14.125 -75.138 39.731 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 14 11.386 -74.855 35.116 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 14 12.173 -78.296 31.746 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 14 12.766 -79.895 31.833 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 14 13.938 -81.063 36.299 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 15 16.811 -75.824 38.534 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 15 18.461 -75.206 37.963 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 15 18.332 -77.478 37.774 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 15 18.628 -75.945 35.225 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 15 16.611 -79.151 35.211 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 15 18.849 -78.006 34.043 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 15 19.578 -78.998 36.268 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 15 15.435 -75.705 35.127 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 15 14.797 -78.798 29.022 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 15 17.060 -80.958 30.922 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 15 16.553 -80.367 29.441 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 16 21.614 -78.603 34.902 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 16 23.206 -77.753 34.482 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 16 22.904 -79.490 33.096 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 16 22.502 -76.708 31.781 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 16 20.775 -79.830 30.471 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 16 22.477 -77.809 29.644 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 16 23.920 -79.586 30.758 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 16 19.880 -77.023 32.410 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 16 17.754 -77.195 27.655 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 16 18.052 -75.404 31.880 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 17 25.447 -77.957 29.268 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 17 26.586 -76.522 28.996 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 17 25.791 -77.550 27.046 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 17 24.765 -74.784 27.398 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 17 22.514 -77.416 25.818 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 17 23.698 -74.990 25.244 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 17 25.439 -76.792 24.775 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 17 22.369 -75.908 29.136 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 17 17.727 -73.081 24.929 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 17 20.052 -74.829 22.707 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 17 18.977 -73.571 22.951 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 18 26.180 -74.864 23.539 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 18 27.133 -73.310 23.211 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 18 25.534 -73.916 21.581 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 18 25.056 -71.367 22.772 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 18 22.018 -73.561 22.059 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 18 23.131 -71.123 21.352 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 18 24.217 -72.901 19.891 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 18 23.391 -72.897 25.309 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 18 17.770 -69.110 24.167 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 18 18.785 -70.272 20.850 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 18 18.053 -69.099 21.791 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 19 25.569 -68.022 19.022 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 19 24.271 -68.061 20.343 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 19 23.117 -67.184 19.309 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 19 23.383 -66.210 20.298 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 19 20.585 -68.633 21.117 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 19 21.034 -65.947 20.565 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 19 20.818 -67.163 18.345 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 19 23.680 -68.821 22.771 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 19 19.099 -65.516 26.665 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 19 17.669 -65.424 23.308 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 19 17.828 -64.720 24.818 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 20 21.942 -63.248 20.172 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 20 21.965 -62.329 18.562 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 20 23.072 -61.084 20.006 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 20 24.778 -62.545 17.824 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 20 26.247 -61.500 21.143 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 20 26.640 -61.193 18.410 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 20 24.943 -59.451 19.134 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 20 25.423 -64.408 18.827 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 20 29.294 -67.182 19.950 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 20 30.561 -66.994 21.080 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 20 30.247 -62.834 23.370 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 21 22.230 -60.186 14.855 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 21 23.966 -60.589 14.346 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 21 22.274 -59.559 12.828 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 21 23.940 -57.253 14.026 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 21 20.239 -56.839 13.360 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 21 22.695 -55.703 12.725 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 21 22.299 -57.625 11.118 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 21 22.608 -57.166 16.261 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 21 20.873 -53.417 18.900 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 21 19.585 -52.325 18.645 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 21 17.574 -52.985 14.383 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 22 24.606 -56.055 10.348 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 22 26.409 -56.074 9.916 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 22 25.030 -54.088 9.493 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 22 26.784 -53.626 11.899 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 22 23.278 -52.224 11.890 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 22 25.927 -51.422 12.096 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 22 25.368 -51.586 9.630 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 22 25.537 -54.688 13.671 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 22 24.123 -53.568 18.233 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 22 22.954 -52.484 18.846 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 22 20.926 -49.964 15.353 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 23 30.214 -50.167 11.046 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 23 29.308 -50.593 12.604 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 23 30.732 -48.760 11.379 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 23 31.398 -48.534 12.315 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 23 30.224 -46.250 9.961 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 23 31.796 -46.995 12.443 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 23 32.941 -46.969 11.652 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 23 28.796 -46.539 13.277 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 23 26.713 -41.546 9.039 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 23 29.144 -43.471 7.088 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 23 28.396 -42.007 7.400 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 24 35.001 -49.223 12.956 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 24 33.747 -47.861 12.875 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 24 35.629 -47.387 14.192 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 24 36.845 -47.119 11.208 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 24 38.796 -47.745 14.000 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 24 38.421 -47.210 11.040 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 24 38.771 -45.878 11.302 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 24 36.889 -50.331 12.829 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 24 41.933 -51.051 13.929 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 24 37.772 -52.671 12.816 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 25 33.799 -43.004 11.181 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 25 33.586 -44.844 11.231 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 25 32.678 -43.265 9.496 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 25 33.830 -41.239 10.416 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 25 31.379 -42.261 7.743 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 25 33.034 -40.171 8.444 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 25 34.450 -41.860 7.166 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 25 31.165 -42.624 11.367 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 25 27.326 -37.354 9.205 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 25 29.548 -38.082 6.389 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 25 28.625 -36.976 7.241 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 26 35.652 -39.540 7.103 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 26 36.807 -38.231 7.725 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 26 35.448 -37.333 6.191 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 26 35.198 -36.281 9.010 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 26 32.162 -36.343 6.726 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 26 33.718 -34.579 8.180 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 26 34.870 -34.930 5.939 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 26 33.048 -38.459 9.571 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 26 29.657 -36.971 12.777 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 26 28.494 -35.721 12.737 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 26 28.884 -33.121 8.769 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 27 35.592 -32.746 7.307 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 27 36.813 -31.752 8.285 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 27 34.755 -30.703 7.998 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 27 35.358 -31.430 10.819 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 27 31.760 -31.584 9.591 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 27 33.335 -30.307 11.476 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 27 33.578 -29.008 9.300 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 27 34.265 -33.919 10.367 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 27 32.697 -36.489 14.029 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 27 31.310 -35.612 14.518 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 27 34.375 -36.025 12.077 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 28 34.157 -27.725 11.104 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 28 35.325 -26.680 12.091 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 28 33.186 -26.351 12.767 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 28 34.871 -28.027 14.764 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 28 31.081 -28.353 14.501 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 28 33.070 -27.781 16.344 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 28 32.544 -25.614 15.111 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 28 33.852 -30.500 13.366 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 28 30.301 -33.260 18.569 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 28 29.278 -29.748 18.502 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 28 29.537 -31.146 19.385 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 29 33.621 -25.036 17.047 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 29 34.999 -24.293 18.038 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 29 33.079 -24.704 19.283 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 29 35.371 -26.632 19.909 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 29 31.761 -27.754 20.213 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 29 34.075 -27.506 21.720 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 29 32.915 -25.242 21.740 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 29 34.369 -28.222 17.892 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 29 32.920 -32.465 20.551 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 29 35.270 -30.438 17.158 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 30 34.920 -25.487 23.604 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 30 36.548 -24.951 24.308 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 30 35.345 -26.550 25.567 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 30 37.779 -27.753 24.237 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 30 34.636 -29.838 24.700 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 30 37.317 -29.805 25.390 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 30 36.089 -28.360 27.087 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 30 36.684 -28.315 21.932 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 30 35.984 -35.134 21.466 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 30 34.706 -34.286 24.795 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 30 35.438 -35.401 23.785 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 31 41.707 -28.580 26.611 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 31 41.210 -28.963 24.866 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 31 42.306 -30.643 26.286 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 31 39.423 -31.329 25.981 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 31 41.060 -31.899 29.335 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 31 39.763 -33.272 27.320 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 31 42.212 -33.085 26.656 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 31 38.720 -29.323 28.188 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 31 34.835 -30.531 30.922 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 31 34.519 -31.847 31.964 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 31 38.147 -34.932 32.016 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 32 40.555 -34.917 25.473 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 32 39.814 -35.619 23.925 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 32 39.366 -36.839 25.895 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 32 36.966 -35.566 24.696 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 32 37.208 -35.783 28.471 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 32 35.608 -36.604 26.357 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 32 37.495 -38.290 26.595 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 32 37.515 -32.993 26.077 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 32 33.767 -30.271 27.687 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 32 32.585 -30.531 28.892 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 32 33.008 -34.856 30.837 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 33 35.158 -38.577 24.853 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 33 34.744 -39.376 23.232 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 33 32.916 -39.461 24.054 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 33 33.500 -37.885 21.437 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 33 30.482 -37.187 23.698 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 33 31.139 -37.803 21.036 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 33 31.013 -39.967 22.316 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 33 33.108 -35.578 21.531 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 33 31.061 -31.101 21.792 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 33 29.735 -30.496 22.681 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 33 27.668 -33.901 25.271 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 34 32.974 -42.339 19.246 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 34 34.616 -42.210 18.398 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 34 32.411 -42.847 17.349 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 34 31.106 -42.657 19.319 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 34 30.816 -44.019 16.138 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 34 30.056 -43.825 19.067 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 34 28.946 -43.064 18.656 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 34 33.337 -44.981 18.344 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 34 31.328 -48.256 14.832 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 34 34.284 -47.290 18.222 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 35 27.805 -42.006 19.066 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 35 26.762 -40.478 19.168 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 35 25.765 -41.548 20.494 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 35 27.079 -38.829 21.199 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 35 26.679 -41.045 23.891 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 35 27.266 -38.298 22.726 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 35 25.932 -37.969 23.024 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 35 29.465 -41.786 22.241 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 35 29.571 -40.780 27.354 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 35 31.566 -42.295 23.497 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 36 23.364 -36.743 23.538 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 36 23.097 -35.590 22.112 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 36 23.455 -34.169 23.248 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 36 24.143 -34.675 20.416 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 36 26.575 -32.695 22.567 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 36 25.025 -32.452 20.278 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 36 23.527 -31.931 22.265 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 36 26.678 -35.981 21.575 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 36 30.336 -36.476 18.601 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 36 30.752 -34.850 18.268 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 36 28.445 -37.447 20.126 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 37 22.505 -31.003 20.101 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 37 21.287 -31.005 18.705 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 37 22.612 -29.318 18.329 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 37 22.882 -31.764 16.413 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 37 25.725 -29.325 16.995 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 37 24.193 -30.396 14.950 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 37 22.891 -28.436 15.916 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 37 25.094 -32.702 18.302 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 37 30.226 -32.581 13.731 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 37 28.523 -29.369 13.305 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 37 29.429 -30.607 12.638 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 38 21.865 -28.978 13.623 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 38 20.611 -29.710 12.471 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 38 22.355 -28.745 11.339 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 38 22.276 -31.780 11.153 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 38 25.593 -29.935 11.053 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 38 24.053 -31.660 9.539 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 38 23.204 -29.305 9.070 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 38 23.771 -31.853 13.387 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 38 28.088 -34.130 11.558 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 38 24.576 -33.928 14.521 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 39 22.451 -31.133 7.212 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 39 21.220 -32.254 6.396 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 39 23.422 -32.380 5.573 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 39 22.517 -34.863 6.823 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 39 26.154 -33.820 7.284 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 39 24.626 -35.858 6.210 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 39 24.762 -34.010 4.455 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 39 23.319 -33.868 9.333 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 39 24.185 -36.935 12.843 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 39 25.624 -37.695 12.311 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 39 22.774 -35.040 11.721 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 40 24.242 -35.741 3.288 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 40 23.190 -36.861 2.251 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 40 25.369 -37.527 2.239 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 40 23.494 -39.384 3.799 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 40 27.176 -39.031 4.726 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 40 25.308 -40.946 3.974 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 40 26.193 -39.869 1.846 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 40 24.207 -37.769 6.059 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 40 23.864 -39.471 10.468 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 40 25.111 -40.643 10.500 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 40 23.103 -37.882 8.537 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 41 22.290 -43.514 2.220 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 41 23.290 -42.922 3.664 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 41 23.921 -44.773 3.729 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 41 23.106 -45.299 4.386 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 41 26.585 -44.189 5.346 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 41 24.946 -46.419 5.393 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 41 26.038 -46.326 3.093 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 41 23.799 -42.105 5.855 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 41 22.719 -42.840 10.553 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 41 23.261 -43.977 11.707 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 41 26.312 -47.084 9.773 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 42 24.652 -48.598 3.915 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 42 23.457 -49.912 3.388 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 42 24.770 -50.435 5.271 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 42 21.877 -49.825 6.030 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 42 24.725 -48.985 8.399 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 42 22.405 -50.482 8.279 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 42 24.255 -51.886 7.226 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 42 22.688 -46.837 6.241 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 42 20.879 -46.240 12.839 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 42 22.879 -49.301 12.703 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 42 21.640 -48.433 13.418 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 43 22.619 -53.273 7.821 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 43 21.298 -54.536 7.510 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 43 21.737 -54.612 9.654 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 43 19.007 -53.272 8.879 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 43 20.816 -52.576 12.150 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 43 18.360 -53.433 11.179 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 43 19.893 -55.462 11.277 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 43 20.724 -50.560 9.135 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 43 18.070 -46.785 10.798 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 43 17.288 -46.490 12.287 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 43 17.476 -50.302 15.121 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 44 17.624 -56.265 11.095 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 44 16.231 -57.144 10.246 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 44 15.701 -56.667 12.407 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 44 14.298 -54.769 10.364 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 44 15.047 -53.725 13.935 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 44 12.931 -53.963 12.165 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 44 13.282 -56.256 13.208 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 44 16.235 -53.194 10.623 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 44 14.283 -49.002 13.022 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 44 16.552 -50.968 9.538 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 45 11.010 -56.201 12.191 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 45 9.718 -56.574 10.916 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 45 8.962 -55.304 12.720 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 45 9.170 -53.668 10.167 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 45 9.757 -52.069 13.579 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 45 8.122 -51.849 11.354 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 45 7.119 -53.658 12.840 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 45 11.906 -52.956 10.678 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 45 11.377 -46.179 11.713 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 45 8.724 -47.652 13.755 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 45 9.294 -46.355 12.865 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 46 5.381 -52.966 11.404 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 46 4.210 -53.082 9.972 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 46 3.838 -51.189 11.185 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 46 5.057 -50.711 8.419 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 46 5.774 -48.336 11.291 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 46 4.705 -48.360 8.736 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 46 2.839 -49.048 10.326 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 46 7.443 -50.917 9.550 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 46 11.291 -48.969 7.584 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 46 11.030 -47.300 7.858 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 46 9.825 -51.029 8.252 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 47 2.203 -48.267 7.736 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 47 1.460 -48.636 6.079 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 47 2.126 -46.451 6.259 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 47 3.804 -48.105 4.339 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 47 5.345 -45.207 6.273 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 47 4.905 -46.065 3.679 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 47 2.771 -44.900 4.444 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 47 5.582 -48.927 6.340 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 47 11.402 -45.904 4.283 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 47 8.883 -43.247 4.180 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 47 10.302 -43.897 3.579 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 48 3.142 -47.858 -0.253 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 48 4.108 -49.182 0.614 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 48 4.638 -47.635 -1.396 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 48 5.412 -45.874 1.004 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 48 3.510 -44.423 -1.927 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 48 5.858 -44.076 -0.493 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 48 6.288 -45.877 -2.234 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 48 2.330 -45.455 1.367 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 48 0.997 -41.086 3.125 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 48 1.122 -39.500 2.503 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 48 3.497 -39.445 -1.623 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 49 9.044 -45.100 -0.847 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 49 10.379 -45.558 0.355 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 49 10.181 -43.344 -0.825 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 49 9.764 -42.917 1.921 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 49 7.317 -41.186 -0.376 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 49 9.269 -40.629 1.501 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 49 10.433 -40.966 -0.733 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 49 7.018 -44.057 1.925 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 49 3.736 -42.178 5.035 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 49 3.012 -40.636 5.159 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 49 4.739 -37.640 1.889 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 50 11.991 -39.592 1.038 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 50 13.351 -39.492 2.293 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 50 11.919 -37.587 2.103 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 50 11.775 -38.896 4.692 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 50 8.531 -37.602 3.251 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 50 10.206 -37.267 5.429 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 50 11.097 -35.803 3.552 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 50 10.068 -40.944 3.858 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 50 6.692 -42.772 6.888 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 50 5.296 -42.099 7.607 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 50 4.742 -37.534 6.380 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 51 13.611 -37.096 8.388 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 51 12.246 -38.268 7.948 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 51 11.390 -38.009 9.419 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 51 11.921 -39.058 9.940 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 51 8.742 -39.388 7.912 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 51 9.712 -39.755 10.487 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 51 9.064 -37.307 10.261 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 51 12.023 -40.366 6.836 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 51 8.413 -45.818 8.943 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 51 6.615 -42.935 10.302 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 51 7.039 -44.548 10.431 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 52 9.431 -38.028 12.704 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 52 10.261 -37.788 14.344 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 52 8.388 -39.172 14.432 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 52 11.020 -40.693 14.751 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 52 8.025 -42.342 13.112 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 52 9.764 -42.666 15.250 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 52 7.927 -41.078 16.011 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 52 10.972 -40.876 11.931 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 52 13.456 -44.303 9.792 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 52 12.589 -45.709 10.244 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 52 13.011 -41.793 10.387 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 53 9.151 -42.002 17.977 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 53 10.233 -41.857 19.476 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 53 9.311 -43.949 19.285 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 53 12.321 -43.858 18.672 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 53 10.059 -46.417 17.019 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 53 12.316 -46.256 18.613 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 53 10.294 -46.098 20.155 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 53 11.684 -43.316 15.841 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 53 14.791 -45.267 12.600 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 53 15.183 -46.880 12.201 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 53 12.838 -49.969 14.963 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 54 12.499 -46.680 21.370 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 54 13.825 -46.318 22.613 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 54 13.982 -48.443 21.701 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 54 16.210 -46.583 20.860 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 54 14.952 -49.279 18.478 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 54 17.269 -48.444 19.771 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 54 15.965 -49.897 21.404 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 54 14.760 -45.759 18.827 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 54 17.107 -47.537 14.531 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 54 15.351 -44.113 17.049 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 55 14.717 -47.223 24.332 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 55 15.226 -45.495 24.769 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 55 13.653 -47.256 25.854 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 55 16.405 -48.162 26.904 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 55 13.894 -50.684 25.641 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 55 15.338 -50.061 27.902 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 55 13.234 -48.610 27.934 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 55 16.460 -49.669 23.529 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 55 19.913 -53.088 24.179 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 55 20.120 -54.317 25.346 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 55 16.627 -54.247 28.583 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 56 15.006 -49.125 30.118 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 56 15.966 -48.390 31.523 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 56 16.003 -50.460 31.957 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 56 18.668 -49.040 31.197 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 56 18.148 -52.788 30.779 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 56 19.839 -50.969 32.019 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 56 17.832 -51.299 33.550 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 56 18.138 -49.994 28.652 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 56 21.602 -50.696 25.484 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 56 22.416 -52.053 26.137 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 56 19.512 -49.402 26.377 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 57 19.902 -50.221 34.660 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 57 20.702 -48.835 35.592 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 57 22.027 -50.709 35.513 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 57 23.028 -48.453 33.654 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 57 23.680 -52.123 32.893 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 57 25.027 -49.748 33.305 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 57 24.551 -50.744 35.602 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 57 21.249 -49.852 31.410 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 57 26.672 -50.721 27.280 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 57 27.797 -51.929 30.549 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 57 28.170 -51.237 29.072 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 58 26.326 -49.154 35.502 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 58 27.151 -47.600 36.081 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 58 28.613 -48.935 34.956 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 58 27.872 -46.351 33.523 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 58 28.794 -49.488 31.563 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 58 29.578 -46.847 31.904 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 58 30.678 -48.207 33.750 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 58 25.585 -47.780 32.164 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 58 27.699 -47.206 25.652 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 58 30.644 -48.380 27.477 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 58 30.005 -47.514 26.196 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 59 31.718 -46.070 33.451 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 59 32.337 -44.465 34.139 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 59 33.269 -45.137 32.076 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 59 32.059 -42.607 32.025 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 59 31.132 -44.331 29.129 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 59 31.491 -41.790 30.758 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 59 32.682 -41.582 30.059 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 59 28.946 -44.023 31.792 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 59 27.352 -44.070 26.829 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 59 26.485 -43.978 31.346 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 60 36.698 -40.734 32.404 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 60 35.487 -41.266 33.701 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 60 36.344 -38.946 33.430 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 60 34.549 -39.175 30.750 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 60 37.423 -37.209 30.893 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 60 34.943 -38.261 29.489 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 60 34.309 -37.064 29.860 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 60 37.328 -40.500 29.752 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 60 41.131 -37.184 28.437 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 60 39.115 -41.314 28.202 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 61 30.677 -35.494 31.968 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 61 30.080 -37.248 32.031 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 61 28.827 -36.372 30.585 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 61 31.042 -38.331 29.440 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 61 29.693 -35.931 27.271 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 61 31.379 -38.396 27.855 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 61 30.280 -39.150 27.420 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 61 32.731 -36.592 26.602 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 61 33.689 -32.189 24.709 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 61 32.873 -30.691 24.794 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 61 28.990 -30.984 27.541 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 62 25.303 -40.133 30.237 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 62 25.687 -41.502 29.050 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 62 23.471 -40.592 29.022 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 62 24.910 -40.008 26.536 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 62 23.080 -37.218 27.547 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 62 24.616 -38.827 25.483 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 62 23.383 -39.247 24.981 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 62 26.180 -37.307 28.873 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 62 24.555 -33.139 26.206 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 62 27.537 -35.215 29.026 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 63 23.699 -41.981 23.968 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 63 23.096 -40.231 24.065 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 63 23.875 -41.764 22.144 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 63 22.241 -44.008 23.716 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 63 25.188 -44.449 21.919 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 63 22.912 -45.455 23.659 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 63 22.320 -45.941 22.483 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 63 25.150 -44.021 25.532 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 63 29.888 -45.233 25.888 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 63 31.109 -45.470 24.718 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 63 29.399 -44.979 20.299 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 64 19.034 -45.755 21.267 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 64 20.740 -46.410 20.954 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 64 19.702 -48.011 20.324 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 64 21.858 -46.598 18.796 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 64 19.075 -48.343 16.899 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 64 21.834 -48.368 17.192 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 64 20.851 -49.795 19.056 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 64 19.260 -45.048 17.618 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 64 20.029 -42.696 13.581 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 64 20.472 -43.955 12.508 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 64 19.401 -42.793 16.115 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 65 23.504 -50.101 18.552 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 65 25.266 -50.026 19.119 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 65 25.391 -50.935 17.207 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 65 26.936 -48.470 17.830 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 65 25.875 -48.532 14.489 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 65 27.614 -47.472 16.746 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 65 28.632 -48.313 16.261 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 65 24.186 -46.692 16.894 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 65 24.500 -45.186 11.915 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 65 22.955 -44.626 16.211 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 66 30.370 -49.304 17.326 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 66 31.259 -50.737 18.095 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 66 32.288 -49.326 19.006 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 66 30.289 -51.168 20.667 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 66 31.749 -47.904 21.914 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 66 31.488 -50.558 22.645 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 66 33.527 -50.391 21.131 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 66 28.776 -48.485 20.313 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 66 25.270 -47.723 23.403 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 66 26.110 -47.661 24.893 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 66 26.177 -48.106 20.980 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 67 33.527 -52.509 22.536 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 67 33.404 -54.344 22.770 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 67 33.847 -53.305 24.742 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 67 31.051 -54.521 24.536 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 67 31.684 -51.450 26.681 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 67 30.744 -54.047 26.870 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 67 33.281 -54.158 27.034 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 67 30.228 -52.102 23.544 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 67 25.681 -50.785 23.843 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 67 25.498 -50.501 25.521 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 67 27.785 -51.553 22.489 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 68 32.141 -56.172 27.880 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 68 31.820 -57.996 27.879 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 68 30.997 -56.947 29.760 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 68 28.789 -57.809 27.802 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 68 28.369 -54.784 30.077 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 68 27.179 -57.208 29.487 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 68 29.037 -57.677 31.161 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 68 29.051 -55.000 26.484 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 68 22.578 -53.062 27.770 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 68 23.788 -54.404 30.952 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 68 22.508 -54.121 29.913 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 69 27.498 -59.439 31.165 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 69 26.980 -61.202 30.918 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 69 25.448 -59.823 32.084 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 69 24.452 -60.669 29.415 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 69 23.573 -57.200 30.685 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 69 22.379 -59.569 29.887 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 69 23.009 -59.823 32.339 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 69 25.854 -58.444 28.064 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 69 23.647 -56.496 24.146 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 69 22.180 -55.645 23.947 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 69 19.812 -55.286 28.064 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 70 20.630 -63.732 29.810 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 70 20.815 -62.166 28.835 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 70 18.974 -62.000 28.837 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 70 19.147 -62.281 27.528 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 70 19.256 -58.642 28.536 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 70 17.731 -60.419 27.068 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 70 16.983 -60.624 29.498 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 70 22.043 -60.673 27.517 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 70 22.676 -59.276 22.873 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 70 21.741 -58.319 21.812 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 70 17.715 -56.851 23.896 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 71 18.188 -66.903 28.948 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 71 16.514 -66.543 29.657 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 71 16.398 -67.778 30.653 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 71 15.155 -65.124 30.136 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 71 15.665 -65.614 33.542 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 71 14.396 -64.185 31.184 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 71 13.254 -64.952 31.411 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 71 18.375 -64.347 32.022 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 71 16.462 -62.212 36.371 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 71 19.735 -62.586 33.159 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 72 11.822 -65.593 30.453 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 72 10.634 -66.806 29.713 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 72 10.010 -64.789 29.071 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 72 12.360 -65.571 26.994 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 72 11.195 -62.326 27.445 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 72 12.956 -64.391 26.096 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 72 12.026 -64.392 25.048 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 72 14.550 -62.946 27.681 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 72 12.110 -57.749 31.457 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 72 9.138 -59.589 30.363 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 72 9.836 -58.137 30.814 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 73 10.278 -64.907 22.875 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 73 9.887 -66.632 22.321 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 73 11.351 -65.911 20.905 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 73 11.871 -68.371 22.516 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 73 14.799 -66.186 21.497 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 73 13.832 -68.767 21.208 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 73 12.714 -67.332 19.427 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 73 13.119 -66.413 24.490 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 73 16.057 -68.305 27.684 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 73 17.340 -68.874 26.704 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 73 13.849 -67.079 27.014 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 74 12.491 -69.735 18.878 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 74 11.497 -71.263 18.544 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 74 13.684 -71.562 17.969 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 74 12.832 -73.081 20.515 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 74 16.410 -71.922 20.011 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 74 14.938 -74.223 20.463 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 74 14.900 -73.789 17.954 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 74 13.691 -70.725 21.852 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 74 14.867 -70.981 26.436 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 74 16.300 -71.916 26.389 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 74 13.317 -70.185 24.486 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 75 14.288 -76.059 18.212 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 75 13.150 -77.522 18.235 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 75 15.373 -78.080 18.572 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 75 13.694 -78.306 21.126 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 75 17.392 -77.422 21.266 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 75 15.600 -79.312 22.196 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 75 16.296 -80.027 19.852 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 75 14.344 -75.416 21.735 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 75 14.808 -74.387 26.502 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 75 15.893 -74.931 27.703 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 75 18.936 -78.154 25.962 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 76 15.337 -82.002 20.973 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 76 14.040 -83.279 21.323 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 76 16.053 -83.479 22.549 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 76 13.736 -82.763 24.253 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 76 17.145 -81.296 25.079 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 76 15.173 -82.902 26.172 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 76 16.643 -84.398 24.731 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 76 14.221 -80.055 23.613 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 76 12.559 -76.652 26.460 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 76 13.522 -76.850 27.861 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 76 12.587 -77.971 24.203 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 77 14.699 -85.445 26.717 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 77 13.217 -86.506 27.054 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 77 14.266 -85.401 28.909 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 77 11.568 -84.501 28.492 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 77 14.142 -81.876 29.440 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 77 11.806 -83.031 30.372 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 77 13.733 -84.546 31.070 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 77 12.282 -82.797 26.574 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 77 9.665 -79.025 25.393 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 77 9.904 -77.987 26.733 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 77 10.633 -81.409 24.924 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 78 12.716 -85.644 32.387 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 78 11.535 -86.859 33.137 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 78 12.251 -85.691 34.796 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 78 9.323 -84.916 33.825 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 78 11.580 -82.693 35.932 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 78 9.036 -83.786 35.930 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 78 10.605 -85.557 36.871 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 78 10.622 -82.992 32.537 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 78 8.983 -78.677 34.960 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 78 9.601 -81.177 31.149 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 79 8.502 -86.266 37.566 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 79 6.952 -87.281 37.569 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 79 7.076 -85.720 39.290 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 79 5.107 -84.835 37.098 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 79 7.043 -82.314 39.206 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 79 4.450 -83.025 38.553 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 79 5.188 -84.551 40.455 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 79 7.162 -83.470 35.676 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 79 6.101 -79.219 33.486 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 79 5.604 -77.699 34.087 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 79 5.183 -77.764 38.832 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 80 2.974 -84.697 40.583 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 80 1.276 -85.399 40.345 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 80 1.327 -83.377 41.514 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 80 0.127 -83.125 38.754 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 80 2.086 -80.232 40.262 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 80 -0.430 -80.850 39.271 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 80 -0.374 -81.581 41.707 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 80 2.783 -82.652 37.548 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 80 2.109 -76.183 35.316 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 80 0.819 -76.126 38.744 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 80 0.787 -75.499 37.194 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 81 -4.352 -82.372 38.146 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 81 -2.804 -81.445 37.726 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 81 -4.021 -79.913 37.518 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 81 -4.381 -79.989 36.410 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 81 -1.826 -77.651 37.919 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 81 -4.113 -77.620 36.374 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 81 -4.849 -77.682 38.816 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 81 -1.003 -80.767 36.411 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 81 -0.367 -75.762 31.752 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 81 -2.443 -74.303 34.389 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 81 -2.012 -74.360 32.773 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 82 -6.712 -76.926 37.232 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 82 -8.364 -77.128 36.416 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 82 -7.497 -75.097 35.928 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 82 -7.736 -77.024 33.594 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 82 -4.966 -74.430 33.655 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 82 -7.128 -75.225 32.126 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 82 -8.029 -73.693 33.954 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 82 -5.094 -77.855 34.297 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 82 -2.485 -80.021 30.986 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 82 -2.185 -78.753 29.876 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 82 -3.821 -80.003 33.235 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 83 -9.620 -74.037 31.946 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 83 -11.214 -74.615 31.198 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 83 -9.861 -73.385 29.746 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 83 -10.226 -76.213 28.945 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 83 -6.886 -74.503 28.276 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 83 -8.983 -75.750 26.946 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 83 -9.652 -73.325 27.322 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 83 -8.111 -76.944 30.501 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 83 -5.462 -80.811 29.779 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 83 -4.569 -80.380 28.384 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 83 -7.261 -79.452 31.106 1.00 0.00 H Missing atom added: ATOM 23 H5'1 RA3 B 84 -13.887 -78.008 28.395 1.00 0.00 H Missing atom added: ATOM 24 H5'2 RA3 B 84 -14.335 -76.847 29.769 1.00 0.00 H Missing atom added: ATOM 25 H4' RA3 B 84 -14.218 -79.378 29.824 1.00 0.00 H Missing atom added: ATOM 26 H3' RA3 B 84 -11.750 -78.506 31.125 1.00 0.00 H Missing atom added: ATOM 29 H1' RA3 B 84 -11.058 -81.024 28.816 1.00 0.00 H Missing atom added: ATOM 27 H2' RA3 B 84 -10.348 -79.289 31.204 1.00 0.00 H Missing atom added: ATOM 28 HO'2 RA3 B 84 -10.724 -80.365 32.016 1.00 0.00 H Missing atom added: ATOM 30 H8 RA3 B 84 -10.628 -77.745 27.457 1.00 0.00 H Missing atom added: ATOM 31 H61 RA3 B 84 -6.498 -79.012 25.138 1.00 0.00 H Missing atom added: ATOM 32 H62 RA3 B 84 -5.590 -80.458 25.101 1.00 0.00 H Missing atom added: ATOM 33 H2 RA3 B 84 -7.465 -83.758 27.978 1.00 0.00 H Missing atom added: ATOM 34 H3T RA3 B 84 -12.690 -81.136 30.726 1.00 0.00 H Missing atom added: ATOM 3 OP3 G B 1 4.855 -80.951 20.500 1.00108.60 O Number of atoms: 2710 Number of residues: 84 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2926 Number of angles built: 5229 Number of dihedrals built: 7953 Number of impropers built: 575 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue: I2A Error: unknown residue(s). Molecule discarded. ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3662540 Number of van der Waals pairs: 378545 Number of H-bonds built: 69 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 15 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 27202.3345 kcal/mol (27158.8697 without restraints) Performing minimization step: 2. Total energy = 26960.4466 kcal/mol (26918.3166 without restraints) Performing minimization step: 3. Total energy = 26729.4448 kcal/mol (26688.5537 without restraints) Performing minimization step: 4. Total energy = 26508.5501 kcal/mol (26468.8098 without restraints) Performing minimization step: 5. Total energy = 26297.0467 kcal/mol (26258.3765 without restraints) Performing minimization step: 6. Total energy = 26094.2800 kcal/mol (26056.6060 without restraints) Performing minimization step: 7. Total energy = 25899.6482 kcal/mol (25862.9024 without restraints) Performing minimization step: 8. Total energy = 25712.6005 kcal/mol (25676.7209 without restraints) Performing minimization step: 9. Total energy = 25532.6316 kcal/mol (25497.5610 without restraints) Performing minimization step: 10. Total energy = 25359.2781 kcal/mol (25324.9643 without restraints) Performing minimization step: 11. Total energy = 25192.1158 kcal/mol (25158.5110 without restraints) Performing minimization step: 12. Total energy = 25030.7547 kcal/mol (24997.8149 without restraints) Performing minimization step: 13. Total energy = 24874.8383 kcal/mol (24842.5231 without restraints) Performing minimization step: 14. Total energy = 24724.0378 kcal/mol (24692.3102 without restraints) Performing minimization step: 15. Total energy = 24578.0523 kcal/mol (24546.8783 without restraints) Performing minimization step: 16. Total energy = 24436.6044 kcal/mol (24405.9528 without restraints) Performing minimization step: 17. Total energy = 24299.4390 kcal/mol (24269.2809 without restraints) Performing minimization step: 18. Total energy = 24166.3207 kcal/mol (24136.6294 without restraints) Performing minimization step: 19. Total energy = 24037.0327 kcal/mol (24007.7840 without restraints) Performing minimization step: 20. Total energy = 23911.3748 kcal/mol (23882.5459 without restraints) Performing minimization step: 21. Total energy = 23789.1614 kcal/mol (23760.7313 without restraints) Performing minimization step: 22. Total energy = 23670.2206 kcal/mol (23642.1698 without restraints) Performing minimization step: 23. Total energy = 23554.3930 kcal/mol (23526.7034 without restraints) Performing minimization step: 24. Total energy = 23441.5303 kcal/mol (23414.1851 without restraints) Performing minimization step: 25. Total energy = 23331.4947 kcal/mol (23304.4783 without restraints) Performing minimization step: 26. Total energy = 23224.1577 kcal/mol (23197.4557 without restraints) Performing minimization step: 27. Total energy = 23119.3991 kcal/mol (23092.9977 without restraints) Performing minimization step: 28. Total energy = 23017.1069 kcal/mol (22990.9935 without restraints) Performing minimization step: 29. Total energy = 22917.1757 kcal/mol (22891.3383 without restraints) Performing minimization step: 30. Total energy = 22819.5068 kcal/mol (22793.9340 without restraints) Performing minimization step: 31. Total energy = 22724.0074 kcal/mol (22698.6888 without restraints) Performing minimization step: 32. Total energy = 22630.5901 kcal/mol (22605.5158 without restraints) Performing minimization step: 33. Total energy = 22539.1729 kcal/mol (22514.3336 without restraints) Performing minimization step: 34. Total energy = 22449.6776 kcal/mol (22425.0643 without restraints) Performing minimization step: 35. Total energy = 22362.0312 kcal/mol (22337.6355 without restraints) Performing minimization step: 36. Total energy = 22276.1641 kcal/mol (22251.9783 without restraints) Performing minimization step: 37. Total energy = 22192.0102 kcal/mol (22168.0268 without restraints) Performing minimization step: 38. Total energy = 22109.5076 kcal/mol (22085.7194 without restraints) Performing minimization step: 39. Total energy = 22028.5971 kcal/mol (22004.9973 without restraints) Performing minimization step: 40. Total energy = 21949.2212 kcal/mol (21925.8035 without restraints) Performing minimization step: 41. Total energy = 21871.3264 kcal/mol (21848.0846 without restraints) Performing minimization step: 42. Total energy = 21794.8615 kcal/mol (21771.7897 without restraints) Performing minimization step: 43. Total energy = 21719.7779 kcal/mol (21696.8706 without restraints) Performing minimization step: 44. Total energy = 21646.0284 kcal/mol (21623.2803 without restraints) Performing minimization step: 45. Total energy = 21573.5689 kcal/mol (21550.9749 without restraints) Performing minimization step: 46. Total energy = 21502.3565 kcal/mol (21479.9118 without restraints) Performing minimization step: 47. Total energy = 21432.3502 kcal/mol (21410.0501 without restraints) Performing minimization step: 48. Total energy = 21363.5107 kcal/mol (21341.3508 without restraints) Performing minimization step: 49. Total energy = 21295.8011 kcal/mol (21273.7771 without restraints) Performing minimization step: 50. Total energy = 21229.1848 kcal/mol (21207.2925 without restraints) Performing minimization step: 51. Total energy = 21163.6271 kcal/mol (21141.8626 without restraints) Performing minimization step: 52. Total energy = 21099.0950 kcal/mol (21077.4547 without restraints) Performing minimization step: 53. Total energy = 21035.5565 kcal/mol (21014.0367 without restraints) Performing minimization step: 54. Total energy = 20972.9810 kcal/mol (20951.5783 without restraints) Performing minimization step: 55. Total energy = 20911.3391 kcal/mol (20890.0499 without restraints) Performing minimization step: 56. Total energy = 20850.6018 kcal/mol (20829.4231 without restraints) Performing minimization step: 57. Total energy = 20790.7426 kcal/mol (20769.6712 without restraints) Performing minimization step: 58. Total energy = 20731.7351 kcal/mol (20710.7681 without restraints) Performing minimization step: 59. Total energy = 20673.5529 kcal/mol (20652.6873 without restraints) Performing minimization step: 60. Total energy = 20616.1720 kcal/mol (20595.4051 without restraints) Performing minimization step: 61. Total energy = 20559.5689 kcal/mol (20538.8978 without restraints) Performing minimization step: 62. Total energy = 20503.7208 kcal/mol (20483.1435 without restraints) Performing minimization step: 63. Total energy = 20448.6061 kcal/mol (20428.1197 without restraints) Performing minimization step: 64. Total energy = 20394.2030 kcal/mol (20373.8053 without restraints) Performing minimization step: 65. Total energy = 20340.4916 kcal/mol (20320.1801 without restraints) Performing minimization step: 66. Total energy = 20287.4517 kcal/mol (20267.2243 without restraints) Performing minimization step: 67. Total energy = 20235.0644 kcal/mol (20214.9190 without restraints) Performing minimization step: 68. Total energy = 20183.3114 kcal/mol (20163.2458 without restraints) Performing minimization step: 69. Total energy = 20132.1747 kcal/mol (20112.1869 without restraints) Performing minimization step: 70. Total energy = 20081.6369 kcal/mol (20061.7252 without restraints) Performing minimization step: 71. Total energy = 20031.6817 kcal/mol (20011.8439 without restraints) Performing minimization step: 72. Total energy = 19982.2930 kcal/mol (19962.5276 without restraints) Performing minimization step: 73. Total energy = 19933.4554 kcal/mol (19913.7605 without restraints) Performing minimization step: 74. Total energy = 19885.1538 kcal/mol (19865.5277 without restraints) Performing minimization step: 75. Total energy = 19837.3737 kcal/mol (19817.8148 without restraints) Performing minimization step: 76. Total energy = 19790.1008 kcal/mol (19770.6075 without restraints) Performing minimization step: 77. Total energy = 19743.3219 kcal/mol (19723.8929 without restraints) Performing minimization step: 78. Total energy = 19697.0237 kcal/mol (19677.6574 without restraints) Performing minimization step: 79. Total energy = 19651.1935 kcal/mol (19631.8884 without restraints) Performing minimization step: 80. Total energy = 19605.8191 kcal/mol (19586.5738 without restraints) Performing minimization step: 81. Total energy = 19560.8884 kcal/mol (19541.7018 without restraints) Performing minimization step: 82. Total energy = 19516.3904 kcal/mol (19497.2611 without restraints) Performing minimization step: 83. Total energy = 19472.3131 kcal/mol (19453.2398 without restraints) Performing minimization step: 84. Total energy = 19428.6465 kcal/mol (19409.6282 without restraints) Performing minimization step: 85. Total energy = 19385.3800 kcal/mol (19366.4154 without restraints) Performing minimization step: 86. Total energy = 19342.5036 kcal/mol (19323.5917 without restraints) Performing minimization step: 87. Total energy = 19300.0077 kcal/mol (19281.1473 without restraints) Performing minimization step: 88. Total energy = 19257.8823 kcal/mol (19239.0722 without restraints) Performing minimization step: 89. Total energy = 19216.1180 kcal/mol (19197.3575 without restraints) Performing minimization step: 90. Total energy = 19174.7067 kcal/mol (19155.9945 without restraints) Performing minimization step: 91. Total energy = 19133.6397 kcal/mol (19114.9752 without restraints) Performing minimization step: 92. Total energy = 19092.9086 kcal/mol (19074.2906 without restraints) Performing minimization step: 93. Total energy = 19052.5048 kcal/mol (19033.9326 without restraints) Performing minimization step: 94. Total energy = 19012.4215 kcal/mol (18993.8942 without restraints) Performing minimization step: 95. Total energy = 18972.6509 kcal/mol (18954.1677 without restraints) Performing minimization step: 96. Total energy = 18933.1854 kcal/mol (18914.7454 without restraints) Performing minimization step: 97. Total energy = 18894.0181 kcal/mol (18875.6206 without restraints) Performing minimization step: 98. Total energy = 18855.1419 kcal/mol (18836.7861 without restraints) Performing minimization step: 99. Total energy = 18816.5508 kcal/mol (18798.2360 without restraints) Performing minimization step: 100. Total energy = 18778.2375 kcal/mol (18759.9630 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 101. Total energy = 18740.1958 kcal/mol (18721.9610 without restraints) Performing minimization step: 102. Total energy = 18702.4197 kcal/mol (18684.2238 without restraints) Performing minimization step: 103. Total energy = 18664.9041 kcal/mol (18646.7465 without restraints) Performing minimization step: 104. Total energy = 18627.6433 kcal/mol (18609.5234 without restraints) Performing minimization step: 105. Total energy = 18590.6312 kcal/mol (18572.5483 without restraints) Performing minimization step: 106. Total energy = 18553.8625 kcal/mol (18535.8162 without restraints) Performing minimization step: 107. Total energy = 18517.3324 kcal/mol (18499.3221 without restraints) Performing minimization step: 108. Total energy = 18481.0356 kcal/mol (18463.0607 without restraints) Performing minimization step: 109. Total energy = 18444.9674 kcal/mol (18427.0273 without restraints) Performing minimization step: 110. Total energy = 18409.1230 kcal/mol (18391.2173 without restraints) Performing minimization step: 111. Total energy = 18373.4978 kcal/mol (18355.6261 without restraints) Performing minimization step: 112. Total energy = 18338.0878 kcal/mol (18320.2495 without restraints) Performing minimization step: 113. Total energy = 18302.8881 kcal/mol (18285.0827 without restraints) Performing minimization step: 114. Total energy = 18267.8949 kcal/mol (18250.1218 without restraints) Performing minimization step: 115. Total energy = 18233.1037 kcal/mol (18215.3629 without restraints) Performing minimization step: 116. Total energy = 18198.5111 kcal/mol (18180.8018 without restraints) Performing minimization step: 117. Total energy = 18164.1131 kcal/mol (18146.4350 without restraints) Performing minimization step: 118. Total energy = 18129.9058 kcal/mol (18112.2585 without restraints) Performing minimization step: 119. Total energy = 18095.8859 kcal/mol (18078.2690 without restraints) Performing minimization step: 120. Total energy = 18062.0499 kcal/mol (18044.4632 without restraints) Performing minimization step: 121. Total energy = 18028.3942 kcal/mol (18010.8370 without restraints) Performing minimization step: 122. Total energy = 17994.9157 kcal/mol (17977.3879 without restraints) Performing minimization step: 123. Total energy = 17961.6111 kcal/mol (17944.1123 without restraints) Performing minimization step: 124. Total energy = 17928.4777 kcal/mol (17911.0075 without restraints) Performing minimization step: 125. Total energy = 17895.5121 kcal/mol (17878.0703 without restraints) Performing minimization step: 126. Total energy = 17862.7112 kcal/mol (17845.2974 without restraints) Performing minimization step: 127. Total energy = 17830.0726 kcal/mol (17812.6865 without restraints) Performing minimization step: 128. Total energy = 17797.5936 kcal/mol (17780.2350 without restraints) Performing minimization step: 129. Total energy = 17765.2714 kcal/mol (17747.9399 without restraints) Performing minimization step: 130. Total energy = 17733.1035 kcal/mol (17715.7990 without restraints) Performing minimization step: 131. Total energy = 17701.0869 kcal/mol (17683.8089 without restraints) Performing minimization step: 132. Total energy = 17669.2196 kcal/mol (17651.9680 without restraints) Performing minimization step: 133. Total energy = 17637.4992 kcal/mol (17620.2736 without restraints) Performing minimization step: 134. Total energy = 17605.9239 kcal/mol (17588.7242 without restraints) Performing minimization step: 135. Total energy = 17574.4904 kcal/mol (17557.3163 without restraints) Performing minimization step: 136. Total energy = 17543.1970 kcal/mol (17526.0482 without restraints) Performing minimization step: 137. Total energy = 17512.0412 kcal/mol (17494.9174 without restraints) Performing minimization step: 138. Total energy = 17481.0209 kcal/mol (17463.9221 without restraints) Performing minimization step: 139. Total energy = 17450.1348 kcal/mol (17433.0607 without restraints) Performing minimization step: 140. Total energy = 17419.3807 kcal/mol (17402.3311 without restraints) Performing minimization step: 141. Total energy = 17388.7567 kcal/mol (17371.7313 without restraints) Performing minimization step: 142. Total energy = 17358.2605 kcal/mol (17341.2591 without restraints) Performing minimization step: 143. Total energy = 17327.8905 kcal/mol (17310.9132 without restraints) Performing minimization step: 144. Total energy = 17297.6452 kcal/mol (17280.6916 without restraints) Performing minimization step: 145. Total energy = 17267.5228 kcal/mol (17250.5926 without restraints) Performing minimization step: 146. Total energy = 17237.5212 kcal/mol (17220.6144 without restraints) Performing minimization step: 147. Total energy = 17207.6394 kcal/mol (17190.7558 without restraints) Performing minimization step: 148. Total energy = 17177.8758 kcal/mol (17161.0152 without restraints) Performing minimization step: 149. Total energy = 17148.2285 kcal/mol (17131.3906 without restraints) Performing minimization step: 150. Total energy = 17118.6959 kcal/mol (17101.8809 without restraints) Performing minimization step: 151. Total energy = 17089.2767 kcal/mol (17072.4840 without restraints) Performing minimization step: 152. Total energy = 17059.9695 kcal/mol (17043.1992 without restraints) Performing minimization step: 153. Total energy = 17030.7727 kcal/mol (17014.0248 without restraints) Performing minimization step: 154. Total energy = 17001.6852 kcal/mol (16984.9592 without restraints) Performing minimization step: 155. Total energy = 16972.7059 kcal/mol (16956.0021 without restraints) Performing minimization step: 156. Total energy = 16943.8337 kcal/mol (16927.1516 without restraints) Performing minimization step: 157. Total energy = 16915.0668 kcal/mol (16898.4064 without restraints) Performing minimization step: 158. Total energy = 16886.4041 kcal/mol (16869.7652 without restraints) Performing minimization step: 159. Total energy = 16857.8444 kcal/mol (16841.2268 without restraints) Performing minimization step: 160. Total energy = 16829.3864 kcal/mol (16812.7903 without restraints) Performing minimization step: 161. Total energy = 16801.0294 kcal/mol (16784.4544 without restraints) Performing minimization step: 162. Total energy = 16772.7721 kcal/mol (16756.2183 without restraints) Performing minimization step: 163. Total energy = 16744.6132 kcal/mol (16728.0803 without restraints) Performing minimization step: 164. Total energy = 16716.5515 kcal/mol (16700.0394 without restraints) Performing minimization step: 165. Total energy = 16688.5865 kcal/mol (16672.0952 without restraints) Performing minimization step: 166. Total energy = 16660.7172 kcal/mol (16644.2465 without restraints) Performing minimization step: 167. Total energy = 16632.9427 kcal/mol (16616.4925 without restraints) Performing minimization step: 168. Total energy = 16605.2614 kcal/mol (16588.8316 without restraints) Performing minimization step: 169. Total energy = 16577.6727 kcal/mol (16561.2633 without restraints) Performing minimization step: 170. Total energy = 16550.1754 kcal/mol (16533.7859 without restraints) Performing minimization step: 171. Total energy = 16522.7689 kcal/mol (16506.3996 without restraints) Performing minimization step: 172. Total energy = 16495.4523 kcal/mol (16479.1031 without restraints) Performing minimization step: 173. Total energy = 16468.2250 kcal/mol (16451.8958 without restraints) Performing minimization step: 174. Total energy = 16441.0862 kcal/mol (16424.7768 without restraints) Performing minimization step: 175. Total energy = 16414.0338 kcal/mol (16397.7442 without restraints) Performing minimization step: 176. Total energy = 16387.0686 kcal/mol (16370.7987 without restraints) Performing minimization step: 177. Total energy = 16360.1891 kcal/mol (16343.9387 without restraints) Performing minimization step: 178. Total energy = 16333.3948 kcal/mol (16317.1640 without restraints) Performing minimization step: 179. Total energy = 16306.6849 kcal/mol (16290.4734 without restraints) Performing minimization step: 180. Total energy = 16280.0583 kcal/mol (16263.8662 without restraints) Performing minimization step: 181. Total energy = 16253.5147 kcal/mol (16237.3419 without restraints) Performing minimization step: 182. Total energy = 16227.0532 kcal/mol (16210.8996 without restraints) Performing minimization step: 183. Total energy = 16200.6730 kcal/mol (16184.5386 without restraints) Performing minimization step: 184. Total energy = 16174.3737 kcal/mol (16158.2583 without restraints) Performing minimization step: 185. Total energy = 16148.1547 kcal/mol (16132.0583 without restraints) Performing minimization step: 186. Total energy = 16122.0154 kcal/mol (16105.9378 without restraints) Performing minimization step: 187. Total energy = 16095.9550 kcal/mol (16079.8962 without restraints) Performing minimization step: 188. Total energy = 16069.9731 kcal/mol (16053.9334 without restraints) Performing minimization step: 189. Total energy = 16044.0692 kcal/mol (16028.0480 without restraints) Performing minimization step: 190. Total energy = 16018.2421 kcal/mol (16002.2395 without restraints) Performing minimization step: 191. Total energy = 15992.4912 kcal/mol (15976.5073 without restraints) Performing minimization step: 192. Total energy = 15966.8165 kcal/mol (15950.8510 without restraints) Performing minimization step: 193. Total energy = 15941.2177 kcal/mol (15925.2707 without restraints) Performing minimization step: 194. Total energy = 15915.6931 kcal/mol (15899.7645 without restraints) Performing minimization step: 195. Total energy = 15890.2435 kcal/mol (15874.3333 without restraints) Performing minimization step: 196. Total energy = 15864.8678 kcal/mol (15848.9759 without restraints) Performing minimization step: 197. Total energy = 15839.5650 kcal/mol (15823.6913 without restraints) Performing minimization step: 198. Total energy = 15814.3350 kcal/mol (15798.4794 without restraints) Performing minimization step: 199. Total energy = 15789.1773 kcal/mol (15773.3399 without restraints) Performing minimization step: 200. Total energy = 15764.0914 kcal/mol (15748.2720 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 201. Total energy = 15739.0769 kcal/mol (15723.2755 without restraints) Performing minimization step: 202. Total energy = 15714.1333 kcal/mol (15698.3499 without restraints) Performing minimization step: 203. Total energy = 15689.2596 kcal/mol (15673.4941 without restraints) Performing minimization step: 204. Total energy = 15664.4559 kcal/mol (15648.7083 without restraints) Performing minimization step: 205. Total energy = 15639.7223 kcal/mol (15623.9924 without restraints) Performing minimization step: 206. Total energy = 15615.0577 kcal/mol (15599.3456 without restraints) Performing minimization step: 207. Total energy = 15590.4622 kcal/mol (15574.7679 without restraints) Performing minimization step: 208. Total energy = 15565.9347 kcal/mol (15550.2580 without restraints) Performing minimization step: 209. Total energy = 15541.4749 kcal/mol (15525.8158 without restraints) Performing minimization step: 210. Total energy = 15517.0827 kcal/mol (15501.4412 without restraints) Performing minimization step: 211. Total energy = 15492.7577 kcal/mol (15477.1337 without restraints) Performing minimization step: 212. Total energy = 15468.4995 kcal/mol (15452.8931 without restraints) Performing minimization step: 213. Total energy = 15444.3075 kcal/mol (15428.7184 without restraints) Performing minimization step: 214. Total energy = 15420.1813 kcal/mol (15404.6095 without restraints) Performing minimization step: 215. Total energy = 15396.1209 kcal/mol (15380.5664 without restraints) Performing minimization step: 216. Total energy = 15372.1256 kcal/mol (15356.5888 without restraints) Performing minimization step: 217. Total energy = 15348.1951 kcal/mol (15332.6753 without restraints) Performing minimization step: 218. Total energy = 15324.3292 kcal/mol (15308.8267 without restraints) Performing minimization step: 219. Total energy = 15300.5271 kcal/mol (15285.0418 without restraints) Performing minimization step: 220. Total energy = 15276.7887 kcal/mol (15261.3205 without restraints) Performing minimization step: 221. Total energy = 15253.1142 kcal/mol (15237.6632 without restraints) Performing minimization step: 222. Total energy = 15229.5026 kcal/mol (15214.0687 without restraints) Performing minimization step: 223. Total energy = 15205.9541 kcal/mol (15190.5372 without restraints) Performing minimization step: 224. Total energy = 15182.4678 kcal/mol (15167.0679 without restraints) Performing minimization step: 225. Total energy = 15159.0438 kcal/mol (15143.6608 without restraints) Performing minimization step: 226. Total energy = 15135.6815 kcal/mol (15120.3155 without restraints) Performing minimization step: 227. Total energy = 15112.3816 kcal/mol (15097.0324 without restraints) Performing minimization step: 228. Total energy = 15089.1423 kcal/mol (15073.8100 without restraints) Performing minimization step: 229. Total energy = 15065.9644 kcal/mol (15050.6489 without restraints) Performing minimization step: 230. Total energy = 15042.8471 kcal/mol (15027.5484 without restraints) Performing minimization step: 231. Total energy = 15019.7902 kcal/mol (15004.5082 without restraints) Performing minimization step: 232. Total energy = 14996.7937 kcal/mol (14981.5284 without restraints) Performing minimization step: 233. Total energy = 14973.8568 kcal/mol (14958.6082 without restraints) Performing minimization step: 234. Total energy = 14950.9797 kcal/mol (14935.7478 without restraints) Performing minimization step: 235. Total energy = 14928.1622 kcal/mol (14912.9469 without restraints) Performing minimization step: 236. Total energy = 14905.4031 kcal/mol (14890.2044 without restraints) Performing minimization step: 237. Total energy = 14882.7027 kcal/mol (14867.5205 without restraints) Performing minimization step: 238. Total energy = 14860.0613 kcal/mol (14844.8956 without restraints) Performing minimization step: 239. Total energy = 14837.4786 kcal/mol (14822.3294 without restraints) Performing minimization step: 240. Total energy = 14814.9537 kcal/mol (14799.8209 without restraints) Performing minimization step: 241. Total energy = 14792.4864 kcal/mol (14777.3700 without restraints) Performing minimization step: 242. Total energy = 14770.0769 kcal/mol (14754.9769 without restraints) Performing minimization step: 243. Total energy = 14747.7242 kcal/mol (14732.6404 without restraints) Performing minimization step: 244. Total energy = 14725.4286 kcal/mol (14710.3613 without restraints) Performing minimization step: 245. Total energy = 14703.1893 kcal/mol (14688.1383 without restraints) Performing minimization step: 246. Total energy = 14681.0074 kcal/mol (14665.9726 without restraints) Performing minimization step: 247. Total energy = 14658.8822 kcal/mol (14643.8637 without restraints) Performing minimization step: 248. Total energy = 14636.8127 kcal/mol (14621.8103 without restraints) Performing minimization step: 249. Total energy = 14614.7996 kcal/mol (14599.8134 without restraints) Performing minimization step: 250. Total energy = 14592.8419 kcal/mol (14577.8719 without restraints) Performing minimization step: 251. Total energy = 14570.9399 kcal/mol (14555.9860 without restraints) Performing minimization step: 252. Total energy = 14549.0933 kcal/mol (14534.1553 without restraints) Performing minimization step: 253. Total energy = 14527.3015 kcal/mol (14512.3797 without restraints) Performing minimization step: 254. Total energy = 14505.5647 kcal/mol (14490.6590 without restraints) Performing minimization step: 255. Total energy = 14483.8826 kcal/mol (14468.9928 without restraints) Performing minimization step: 256. Total energy = 14462.2549 kcal/mol (14447.3811 without restraints) Performing minimization step: 257. Total energy = 14440.6815 kcal/mol (14425.8237 without restraints) Performing minimization step: 258. Total energy = 14419.1620 kcal/mol (14404.3201 without restraints) Performing minimization step: 259. Total energy = 14397.6966 kcal/mol (14382.8706 without restraints) Performing minimization step: 260. Total energy = 14376.2845 kcal/mol (14361.4742 without restraints) Performing minimization step: 261. Total energy = 14354.9263 kcal/mol (14340.1320 without restraints) Performing minimization step: 262. Total energy = 14333.6214 kcal/mol (14318.8429 without restraints) Performing minimization step: 263. Total energy = 14312.3695 kcal/mol (14297.6067 without restraints) Performing minimization step: 264. Total energy = 14291.1702 kcal/mol (14276.4232 without restraints) Performing minimization step: 265. Total energy = 14270.0241 kcal/mol (14255.2929 without restraints) Performing minimization step: 266. Total energy = 14248.9304 kcal/mol (14234.2149 without restraints) Performing minimization step: 267. Total energy = 14227.8891 kcal/mol (14213.1893 without restraints) Performing minimization step: 268. Total energy = 14206.9001 kcal/mol (14192.2158 without restraints) Performing minimization step: 269. Total energy = 14185.9630 kcal/mol (14171.2945 without restraints) Performing minimization step: 270. Total energy = 14165.0777 kcal/mol (14150.4247 without restraints) Performing minimization step: 271. Total energy = 14144.2446 kcal/mol (14129.6073 without restraints) Performing minimization step: 272. Total energy = 14123.4628 kcal/mol (14108.8409 without restraints) Performing minimization step: 273. Total energy = 14102.7318 kcal/mol (14088.1255 without restraints) Performing minimization step: 274. Total energy = 14082.0527 kcal/mol (14067.4619 without restraints) Performing minimization step: 275. Total energy = 14061.4246 kcal/mol (14046.8493 without restraints) Performing minimization step: 276. Total energy = 14040.8472 kcal/mol (14026.2873 without restraints) Performing minimization step: 277. Total energy = 14020.3208 kcal/mol (14005.7764 without restraints) Performing minimization step: 278. Total energy = 13999.8450 kcal/mol (13985.3160 without restraints) Performing minimization step: 279. Total energy = 13979.4191 kcal/mol (13964.9053 without restraints) Performing minimization step: 280. Total energy = 13959.0434 kcal/mol (13944.5451 without restraints) Performing minimization step: 281. Total energy = 13938.7178 kcal/mol (13924.2348 without restraints) Performing minimization step: 282. Total energy = 13918.4424 kcal/mol (13903.9747 without restraints) Performing minimization step: 283. Total energy = 13898.2167 kcal/mol (13883.7644 without restraints) Performing minimization step: 284. Total energy = 13878.0401 kcal/mol (13863.6029 without restraints) Performing minimization step: 285. Total energy = 13857.9129 kcal/mol (13843.4910 without restraints) Performing minimization step: 286. Total energy = 13837.8352 kcal/mol (13823.4286 without restraints) Performing minimization step: 287. Total energy = 13817.8069 kcal/mol (13803.4155 without restraints) Performing minimization step: 288. Total energy = 13797.8269 kcal/mol (13783.4506 without restraints) Performing minimization step: 289. Total energy = 13777.8964 kcal/mol (13763.5352 without restraints) Performing minimization step: 290. Total energy = 13758.0144 kcal/mol (13743.6683 without restraints) Performing minimization step: 291. Total energy = 13738.1812 kcal/mol (13723.8502 without restraints) Performing minimization step: 292. Total energy = 13718.3963 kcal/mol (13704.0804 without restraints) Performing minimization step: 293. Total energy = 13698.6601 kcal/mol (13684.3592 without restraints) Performing minimization step: 294. Total energy = 13678.9719 kcal/mol (13664.6860 without restraints) Performing minimization step: 295. Total energy = 13659.3317 kcal/mol (13645.0609 without restraints) Performing minimization step: 296. Total energy = 13639.7392 kcal/mol (13625.4833 without restraints) Performing minimization step: 297. Total energy = 13620.1943 kcal/mol (13605.9534 without restraints) Performing minimization step: 298. Total energy = 13600.6972 kcal/mol (13586.4713 without restraints) Performing minimization step: 299. Total energy = 13581.2475 kcal/mol (13567.0365 without restraints) Performing minimization step: 300. Total energy = 13561.8452 kcal/mol (13547.6490 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 301. Total energy = 13542.4900 kcal/mol (13528.3087 without restraints) Performing minimization step: 302. Total energy = 13523.1819 kcal/mol (13509.0154 without restraints) Performing minimization step: 303. Total energy = 13503.9206 kcal/mol (13489.7689 without restraints) Performing minimization step: 304. Total energy = 13484.7060 kcal/mol (13470.5691 without restraints) Performing minimization step: 305. Total energy = 13465.5385 kcal/mol (13451.4164 without restraints) Performing minimization step: 306. Total energy = 13446.4172 kcal/mol (13432.3098 without restraints) Performing minimization step: 307. Total energy = 13427.3425 kcal/mol (13413.2498 without restraints) Performing minimization step: 308. Total energy = 13408.3143 kcal/mol (13394.2362 without restraints) Performing minimization step: 309. Total energy = 13389.3320 kcal/mol (13375.2687 without restraints) Performing minimization step: 310. Total energy = 13370.3959 kcal/mol (13356.3473 without restraints) Performing minimization step: 311. Total energy = 13351.5057 kcal/mol (13337.4717 without restraints) Performing minimization step: 312. Total energy = 13332.6615 kcal/mol (13318.6421 without restraints) Performing minimization step: 313. Total energy = 13313.8628 kcal/mol (13299.8581 without restraints) Performing minimization step: 314. Total energy = 13295.1096 kcal/mol (13281.1195 without restraints) Performing minimization step: 315. Total energy = 13276.4020 kcal/mol (13262.4263 without restraints) Performing minimization step: 316. Total energy = 13257.7396 kcal/mol (13243.7785 without restraints) Performing minimization step: 317. Total energy = 13239.1225 kcal/mol (13225.1759 without restraints) Performing minimization step: 318. Total energy = 13220.5504 kcal/mol (13206.6182 without restraints) Performing minimization step: 319. Total energy = 13202.0233 kcal/mol (13188.1059 without restraints) Performing minimization step: 320. Total energy = 13183.5413 kcal/mol (13169.6380 without restraints) Performing minimization step: 321. Total energy = 13165.1039 kcal/mol (13151.2153 without restraints) Performing minimization step: 322. Total energy = 13146.7107 kcal/mol (13132.8362 without restraints) Performing minimization step: 323. Total energy = 13128.3623 kcal/mol (13114.5023 without restraints) Performing minimization step: 324. Total energy = 13110.0582 kcal/mol (13096.2124 without restraints) Performing minimization step: 325. Total energy = 13091.7986 kcal/mol (13077.9672 without restraints) Performing minimization step: 326. Total energy = 13073.5831 kcal/mol (13059.7660 without restraints) Performing minimization step: 327. Total energy = 13055.4119 kcal/mol (13041.6092 without restraints) Performing minimization step: 328. Total energy = 13037.2841 kcal/mol (13023.4956 without restraints) Performing minimization step: 329. Total energy = 13019.2006 kcal/mol (13005.4263 without restraints) Performing minimization step: 330. Total energy = 13001.1606 kcal/mol (12987.4005 without restraints) Performing minimization step: 331. Total energy = 12983.1644 kcal/mol (12969.4186 without restraints) Performing minimization step: 332. Total energy = 12965.2117 kcal/mol (12951.4801 without restraints) Performing minimization step: 333. Total energy = 12947.3023 kcal/mol (12933.5848 without restraints) Performing minimization step: 334. Total energy = 12929.4361 kcal/mol (12915.7327 without restraints) Performing minimization step: 335. Total energy = 12911.6129 kcal/mol (12897.9234 without restraints) Performing minimization step: 336. Total energy = 12893.8327 kcal/mol (12880.1575 without restraints) Performing minimization step: 337. Total energy = 12876.0957 kcal/mol (12862.4345 without restraints) Performing minimization step: 338. Total energy = 12858.4015 kcal/mol (12844.7544 without restraints) Performing minimization step: 339. Total energy = 12840.7502 kcal/mol (12827.1171 without restraints) Performing minimization step: 340. Total energy = 12823.1417 kcal/mol (12809.5226 without restraints) Performing minimization step: 341. Total energy = 12805.5754 kcal/mol (12791.9703 without restraints) Performing minimization step: 342. Total energy = 12788.0515 kcal/mol (12774.4603 without restraints) Performing minimization step: 343. Total energy = 12770.5700 kcal/mol (12756.9928 without restraints) Performing minimization step: 344. Total energy = 12753.1308 kcal/mol (12739.5675 without restraints) Performing minimization step: 345. Total energy = 12735.7337 kcal/mol (12722.1842 without restraints) Performing minimization step: 346. Total energy = 12718.3786 kcal/mol (12704.8430 without restraints) Performing minimization step: 347. Total energy = 12701.0654 kcal/mol (12687.5437 without restraints) Performing minimization step: 348. Total energy = 12683.7939 kcal/mol (12670.2859 without restraints) Performing minimization step: 349. Total energy = 12666.5641 kcal/mol (12653.0703 without restraints) Performing minimization step: 350. Total energy = 12649.3763 kcal/mol (12635.8960 without restraints) Performing minimization step: 351. Total energy = 12632.2300 kcal/mol (12618.7635 without restraints) Performing minimization step: 352. Total energy = 12615.1245 kcal/mol (12601.6716 without restraints) Performing minimization step: 353. Total energy = 12598.0606 kcal/mol (12584.6215 without restraints) Performing minimization step: 354. Total energy = 12581.0379 kcal/mol (12567.6124 without restraints) Performing minimization step: 355. Total energy = 12564.0565 kcal/mol (12550.6448 without restraints) Performing minimization step: 356. Total energy = 12547.1163 kcal/mol (12533.7182 without restraints) Performing minimization step: 357. Total energy = 12530.2170 kcal/mol (12516.8326 without restraints) Performing minimization step: 358. Total energy = 12513.3586 kcal/mol (12499.9877 without restraints) Performing minimization step: 359. Total energy = 12496.5405 kcal/mol (12483.1832 without restraints) Performing minimization step: 360. Total energy = 12479.7631 kcal/mol (12466.4194 without restraints) Performing minimization step: 361. Total energy = 12463.0261 kcal/mol (12449.6959 without restraints) Performing minimization step: 362. Total energy = 12446.3295 kcal/mol (12433.0128 without restraints) Performing minimization step: 363. Total energy = 12429.6730 kcal/mol (12416.3698 without restraints) Performing minimization step: 364. Total energy = 12413.0569 kcal/mol (12399.7672 without restraints) Performing minimization step: 365. Total energy = 12396.4807 kcal/mol (12383.2045 without restraints) Performing minimization step: 366. Total energy = 12379.9446 kcal/mol (12366.6817 without restraints) Performing minimization step: 367. Total energy = 12363.4483 kcal/mol (12350.1989 without restraints) Performing minimization step: 368. Total energy = 12346.9921 kcal/mol (12333.7561 without restraints) Performing minimization step: 369. Total energy = 12330.5758 kcal/mol (12317.3532 without restraints) Performing minimization step: 370. Total energy = 12314.1988 kcal/mol (12300.9894 without restraints) Performing minimization step: 371. Total energy = 12297.8615 kcal/mol (12284.6655 without restraints) Performing minimization step: 372. Total energy = 12281.5635 kcal/mol (12268.3808 without restraints) Performing minimization step: 373. Total energy = 12265.3051 kcal/mol (12252.1357 without restraints) Performing minimization step: 374. Total energy = 12249.0862 kcal/mol (12235.9300 without restraints) Performing minimization step: 375. Total energy = 12232.9060 kcal/mol (12219.7630 without restraints) Performing minimization step: 376. Total energy = 12216.7649 kcal/mol (12203.6351 without restraints) Performing minimization step: 377. Total energy = 12200.6625 kcal/mol (12187.5461 without restraints) Performing minimization step: 378. Total energy = 12184.5996 kcal/mol (12171.4962 without restraints) Performing minimization step: 379. Total energy = 12168.5751 kcal/mol (12155.4849 without restraints) Performing minimization step: 380. Total energy = 12152.5899 kcal/mol (12139.5129 without restraints) Performing minimization step: 381. Total energy = 12136.6431 kcal/mol (12123.5790 without restraints) Performing minimization step: 382. Total energy = 12120.7347 kcal/mol (12107.6837 without restraints) Performing minimization step: 383. Total energy = 12104.8647 kcal/mol (12091.8268 without restraints) Performing minimization step: 384. Total energy = 12089.0328 kcal/mol (12076.0079 without restraints) Performing minimization step: 385. Total energy = 12073.2394 kcal/mol (12060.2275 without restraints) Performing minimization step: 386. Total energy = 12057.4842 kcal/mol (12044.4853 without restraints) Performing minimization step: 387. Total energy = 12041.7670 kcal/mol (12028.7811 without restraints) Performing minimization step: 388. Total energy = 12026.0876 kcal/mol (12013.1146 without restraints) Performing minimization step: 389. Total energy = 12010.4463 kcal/mol (11997.4862 without restraints) Performing minimization step: 390. Total energy = 11994.8427 kcal/mol (11981.8956 without restraints) Performing minimization step: 391. Total energy = 11979.2773 kcal/mol (11966.3431 without restraints) Performing minimization step: 392. Total energy = 11963.7489 kcal/mol (11950.8276 without restraints) Performing minimization step: 393. Total energy = 11948.2585 kcal/mol (11935.3499 without restraints) Performing minimization step: 394. Total energy = 11932.8053 kcal/mol (11919.9096 without restraints) Performing minimization step: 395. Total energy = 11917.3895 kcal/mol (11904.5065 without restraints) Performing minimization step: 396. Total energy = 11902.0102 kcal/mol (11889.1399 without restraints) Performing minimization step: 397. Total energy = 11886.6685 kcal/mol (11873.8110 without restraints) Performing minimization step: 398. Total energy = 11871.3642 kcal/mol (11858.5194 without restraints) Performing minimization step: 399. Total energy = 11856.0966 kcal/mol (11843.2645 without restraints) Performing minimization step: 400. Total energy = 11840.8657 kcal/mol (11828.0463 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 401. Total energy = 11825.6712 kcal/mol (11812.8642 without restraints) Performing minimization step: 402. Total energy = 11810.5138 kcal/mol (11797.7197 without restraints) Performing minimization step: 403. Total energy = 11795.3935 kcal/mol (11782.6119 without restraints) Performing minimization step: 404. Total energy = 11780.3099 kcal/mol (11767.5409 without restraints) Performing minimization step: 405. Total energy = 11765.2621 kcal/mol (11752.5057 without restraints) Performing minimization step: 406. Total energy = 11750.2508 kcal/mol (11737.5069 without restraints) Performing minimization step: 407. Total energy = 11735.2761 kcal/mol (11722.5448 without restraints) Performing minimization step: 408. Total energy = 11720.3373 kcal/mol (11707.6185 without restraints) Performing minimization step: 409. Total energy = 11705.4345 kcal/mol (11692.7280 without restraints) Performing minimization step: 410. Total energy = 11690.5677 kcal/mol (11677.8737 without restraints) Performing minimization step: 411. Total energy = 11675.7371 kcal/mol (11663.0558 without restraints) Performing minimization step: 412. Total energy = 11660.9417 kcal/mol (11648.2725 without restraints) Performing minimization step: 413. Total energy = 11646.1822 kcal/mol (11633.5254 without restraints) Performing minimization step: 414. Total energy = 11631.4583 kcal/mol (11618.8140 without restraints) Performing minimization step: 415. Total energy = 11616.7705 kcal/mol (11604.1384 without restraints) Performing minimization step: 416. Total energy = 11602.1176 kcal/mol (11589.4976 without restraints) Performing minimization step: 417. Total energy = 11587.5002 kcal/mol (11574.8927 without restraints) Performing minimization step: 418. Total energy = 11572.9184 kcal/mol (11560.3233 without restraints) Performing minimization step: 419. Total energy = 11558.3716 kcal/mol (11545.7886 without restraints) Performing minimization step: 420. Total energy = 11543.8602 kcal/mol (11531.2895 without restraints) Performing minimization step: 421. Total energy = 11529.3837 kcal/mol (11516.8251 without restraints) Performing minimization step: 422. Total energy = 11514.9426 kcal/mol (11502.3962 without restraints) Performing minimization step: 423. Total energy = 11500.5360 kcal/mol (11488.0017 without restraints) Performing minimization step: 424. Total energy = 11486.1639 kcal/mol (11473.6418 without restraints) Performing minimization step: 425. Total energy = 11471.8262 kcal/mol (11459.3161 without restraints) Performing minimization step: 426. Total energy = 11457.5238 kcal/mol (11445.0258 without restraints) Performing minimization step: 427. Total energy = 11443.2555 kcal/mol (11430.7695 without restraints) Performing minimization step: 428. Total energy = 11429.0217 kcal/mol (11416.5479 without restraints) Performing minimization step: 429. Total energy = 11414.8226 kcal/mol (11402.3607 without restraints) Performing minimization step: 430. Total energy = 11400.6576 kcal/mol (11388.2077 without restraints) Performing minimization step: 431. Total energy = 11386.5266 kcal/mol (11374.0886 without restraints) Performing minimization step: 432. Total energy = 11372.4299 kcal/mol (11360.0039 without restraints) Performing minimization step: 433. Total energy = 11358.3668 kcal/mol (11345.9526 without restraints) Performing minimization step: 434. Total energy = 11344.3378 kcal/mol (11331.9356 without restraints) Performing minimization step: 435. Total energy = 11330.3427 kcal/mol (11317.9523 without restraints) Performing minimization step: 436. Total energy = 11316.3812 kcal/mol (11304.0027 without restraints) Performing minimization step: 437. Total energy = 11302.4533 kcal/mol (11290.0865 without restraints) Performing minimization step: 438. Total energy = 11288.5590 kcal/mol (11276.2041 without restraints) Performing minimization step: 439. Total energy = 11274.6982 kcal/mol (11262.3550 without restraints) Performing minimization step: 440. Total energy = 11260.8706 kcal/mol (11248.5392 without restraints) Performing minimization step: 441. Total energy = 11247.0765 kcal/mol (11234.7569 without restraints) Performing minimization step: 442. Total energy = 11233.3153 kcal/mol (11221.0074 without restraints) Performing minimization step: 443. Total energy = 11219.5870 kcal/mol (11207.2907 without restraints) Performing minimization step: 444. Total energy = 11205.8922 kcal/mol (11193.6077 without restraints) Performing minimization step: 445. Total energy = 11192.2310 kcal/mol (11179.9580 without restraints) Performing minimization step: 446. Total energy = 11178.6022 kcal/mol (11166.3407 without restraints) Performing minimization step: 447. Total energy = 11165.0060 kcal/mol (11152.7562 without restraints) Performing minimization step: 448. Total energy = 11151.4428 kcal/mol (11139.2045 without restraints) Performing minimization step: 449. Total energy = 11137.9124 kcal/mol (11125.6857 without restraints) Performing minimization step: 450. Total energy = 11124.4144 kcal/mol (11112.1992 without restraints) Performing minimization step: 451. Total energy = 11110.9492 kcal/mol (11098.7456 without restraints) Performing minimization step: 452. Total energy = 11097.5161 kcal/mol (11085.3238 without restraints) Performing minimization step: 453. Total energy = 11084.1151 kcal/mol (11071.9343 without restraints) Performing minimization step: 454. Total energy = 11070.7461 kcal/mol (11058.5767 without restraints) Performing minimization step: 455. Total energy = 11057.4092 kcal/mol (11045.2512 without restraints) Performing minimization step: 456. Total energy = 11044.1050 kcal/mol (11031.9584 without restraints) Performing minimization step: 457. Total energy = 11030.8328 kcal/mol (11018.6976 without restraints) Performing minimization step: 458. Total energy = 11017.5919 kcal/mol (11005.4680 without restraints) Performing minimization step: 459. Total energy = 11004.3826 kcal/mol (10992.2700 without restraints) Performing minimization step: 460. Total energy = 10991.2058 kcal/mol (10979.1045 without restraints) Performing minimization step: 461. Total energy = 10978.0605 kcal/mol (10965.9704 without restraints) Performing minimization step: 462. Total energy = 10964.9464 kcal/mol (10952.8675 without restraints) Performing minimization step: 463. Total energy = 10951.8638 kcal/mol (10939.7961 without restraints) Performing minimization step: 464. Total energy = 10938.8126 kcal/mol (10926.7560 without restraints) Performing minimization step: 465. Total energy = 10925.7925 kcal/mol (10913.7471 without restraints) Performing minimization step: 466. Total energy = 10912.8038 kcal/mol (10900.7695 without restraints) Performing minimization step: 467. Total energy = 10899.8463 kcal/mol (10887.8232 without restraints) Performing minimization step: 468. Total energy = 10886.9196 kcal/mol (10874.9075 without restraints) Performing minimization step: 469. Total energy = 10874.0239 kcal/mol (10862.0229 without restraints) Performing minimization step: 470. Total energy = 10861.1589 kcal/mol (10849.1689 without restraints) Performing minimization step: 471. Total energy = 10848.3246 kcal/mol (10836.3458 without restraints) Performing minimization step: 472. Total energy = 10835.5213 kcal/mol (10823.5531 without restraints) Performing minimization step: 473. Total energy = 10822.7483 kcal/mol (10810.7913 without restraints) Performing minimization step: 474. Total energy = 10810.0061 kcal/mol (10798.0598 without restraints) Performing minimization step: 475. Total energy = 10797.2944 kcal/mol (10785.3592 without restraints) Performing minimization step: 476. Total energy = 10784.6129 kcal/mol (10772.6886 without restraints) Performing minimization step: 477. Total energy = 10771.9620 kcal/mol (10760.0485 without restraints) Performing minimization step: 478. Total energy = 10759.3408 kcal/mol (10747.4382 without restraints) Performing minimization step: 479. Total energy = 10746.7499 kcal/mol (10734.8581 without restraints) Performing minimization step: 480. Total energy = 10734.1889 kcal/mol (10722.3079 without restraints) Performing minimization step: 481. Total energy = 10721.6578 kcal/mol (10709.7875 without restraints) Performing minimization step: 482. Total energy = 10709.1566 kcal/mol (10697.2971 without restraints) Performing minimization step: 483. Total energy = 10696.6850 kcal/mol (10684.8362 without restraints) Performing minimization step: 484. Total energy = 10684.2435 kcal/mol (10672.4053 without restraints) Performing minimization step: 485. Total energy = 10671.8316 kcal/mol (10660.0043 without restraints) Performing minimization step: 486. Total energy = 10659.4492 kcal/mol (10647.6324 without restraints) Performing minimization step: 487. Total energy = 10647.0963 kcal/mol (10635.2901 without restraints) Performing minimization step: 488. Total energy = 10634.7719 kcal/mol (10622.9764 without restraints) Performing minimization step: 489. Total energy = 10622.4776 kcal/mol (10610.6926 without restraints) Performing minimization step: 490. Total energy = 10610.2125 kcal/mol (10598.4381 without restraints) Performing minimization step: 491. Total energy = 10597.9764 kcal/mol (10586.2124 without restraints) Performing minimization step: 492. Total energy = 10585.7693 kcal/mol (10574.0159 without restraints) Performing minimization step: 493. Total energy = 10573.5909 kcal/mol (10561.8478 without restraints) Performing minimization step: 494. Total energy = 10561.4410 kcal/mol (10549.7085 without restraints) Performing minimization step: 495. Total energy = 10549.3202 kcal/mol (10537.5981 without restraints) Performing minimization step: 496. Total energy = 10537.2285 kcal/mol (10525.5167 without restraints) Performing minimization step: 497. Total energy = 10525.1653 kcal/mol (10513.4639 without restraints) Performing minimization step: 498. Total energy = 10513.1306 kcal/mol (10501.4397 without restraints) Performing minimization step: 499. Total energy = 10501.1247 kcal/mol (10489.4441 without restraints) Performing minimization step: 500. Total energy = 10489.1470 kcal/mol (10477.4766 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 501. Total energy = 10477.1975 kcal/mol (10465.5375 without restraints) Performing minimization step: 502. Total energy = 10465.2758 kcal/mol (10453.6258 without restraints) Performing minimization step: 503. Total energy = 10453.3824 kcal/mol (10441.7428 without restraints) Performing minimization step: 504. Total energy = 10441.5178 kcal/mol (10429.8885 without restraints) Performing minimization step: 505. Total energy = 10429.6802 kcal/mol (10418.0610 without restraints) Performing minimization step: 506. Total energy = 10417.8707 kcal/mol (10406.2616 without restraints) Performing minimization step: 507. Total energy = 10406.0890 kcal/mol (10394.4900 without restraints) Performing minimization step: 508. Total energy = 10394.3355 kcal/mol (10382.7465 without restraints) Performing minimization step: 509. Total energy = 10382.6091 kcal/mol (10371.0303 without restraints) Performing minimization step: 510. Total energy = 10370.9104 kcal/mol (10359.3417 without restraints) Performing minimization step: 511. Total energy = 10359.2389 kcal/mol (10347.6802 without restraints) Performing minimization step: 512. Total energy = 10347.5954 kcal/mol (10336.0468 without restraints) Performing minimization step: 513. Total energy = 10335.9788 kcal/mol (10324.4400 without restraints) Performing minimization step: 514. Total energy = 10324.3893 kcal/mol (10312.8606 without restraints) Performing minimization step: 515. Total energy = 10312.8272 kcal/mol (10301.3083 without restraints) Performing minimization step: 516. Total energy = 10301.2920 kcal/mol (10289.7830 without restraints) Performing minimization step: 517. Total energy = 10289.7843 kcal/mol (10278.2852 without restraints) Performing minimization step: 518. Total energy = 10278.3029 kcal/mol (10266.8137 without restraints) Performing minimization step: 519. Total energy = 10266.8485 kcal/mol (10255.3691 without restraints) Performing minimization step: 520. Total energy = 10255.4207 kcal/mol (10243.9511 without restraints) Performing minimization step: 521. Total energy = 10244.0198 kcal/mol (10232.5600 without restraints) Performing minimization step: 522. Total energy = 10232.6448 kcal/mol (10221.1947 without restraints) Performing minimization step: 523. Total energy = 10221.2967 kcal/mol (10209.8563 without restraints) Performing minimization step: 524. Total energy = 10209.9750 kcal/mol (10198.5443 without restraints) Performing minimization step: 525. Total energy = 10198.6794 kcal/mol (10187.2584 without restraints) Performing minimization step: 526. Total energy = 10187.4104 kcal/mol (10175.9992 without restraints) Performing minimization step: 527. Total energy = 10176.1675 kcal/mol (10164.7658 without restraints) Performing minimization step: 528. Total energy = 10164.9506 kcal/mol (10153.5586 without restraints) Performing minimization step: 529. Total energy = 10153.7597 kcal/mol (10142.3772 without restraints) Performing minimization step: 530. Total energy = 10142.5948 kcal/mol (10131.2217 without restraints) Performing minimization step: 531. Total energy = 10131.4558 kcal/mol (10120.0924 without restraints) Performing minimization step: 532. Total energy = 10120.3423 kcal/mol (10108.9885 without restraints) Performing minimization step: 533. Total energy = 10109.2547 kcal/mol (10097.9103 without restraints) Performing minimization step: 534. Total energy = 10098.1926 kcal/mol (10086.8577 without restraints) Performing minimization step: 535. Total energy = 10087.1563 kcal/mol (10075.8308 without restraints) Performing minimization step: 536. Total energy = 10076.1455 kcal/mol (10064.8294 without restraints) Performing minimization step: 537. Total energy = 10065.1596 kcal/mol (10053.8528 without restraints) Performing minimization step: 538. Total energy = 10054.1990 kcal/mol (10042.9017 without restraints) Performing minimization step: 539. Total energy = 10043.2641 kcal/mol (10031.9762 without restraints) Performing minimization step: 540. Total energy = 10032.3540 kcal/mol (10021.0753 without restraints) Performing minimization step: 541. Total energy = 10021.4690 kcal/mol (10010.1996 without restraints) Performing minimization step: 542. Total energy = 10010.6088 kcal/mol (9999.3486 without restraints) Performing minimization step: 543. Total energy = 9999.7735 kcal/mol (9988.5226 without restraints) Performing minimization step: 544. Total energy = 9988.9630 kcal/mol (9977.7213 without restraints) Performing minimization step: 545. Total energy = 9978.1773 kcal/mol (9966.9449 without restraints) Performing minimization step: 546. Total energy = 9967.4165 kcal/mol (9956.1932 without restraints) Performing minimization step: 547. Total energy = 9956.6796 kcal/mol (9945.4653 without restraints) Performing minimization step: 548. Total energy = 9945.9681 kcal/mol (9934.7630 without restraints) Performing minimization step: 549. Total energy = 9935.2805 kcal/mol (9924.0844 without restraints) Performing minimization step: 550. Total energy = 9924.6169 kcal/mol (9913.4299 without restraints) Performing minimization step: 551. Total energy = 9913.9771 kcal/mol (9902.7990 without restraints) Performing minimization step: 552. Total energy = 9903.3618 kcal/mol (9892.1928 without restraints) Performing minimization step: 553. Total energy = 9892.7711 kcal/mol (9881.6111 without restraints) Performing minimization step: 554. Total energy = 9882.2042 kcal/mol (9871.0533 without restraints) Performing minimization step: 555. Total energy = 9871.6613 kcal/mol (9860.5193 without restraints) Performing minimization step: 556. Total energy = 9861.1423 kcal/mol (9850.0093 without restraints) Performing minimization step: 557. Total energy = 9850.6467 kcal/mol (9839.5224 without restraints) Performing minimization step: 558. Total energy = 9840.1750 kcal/mol (9829.0596 without restraints) Performing minimization step: 559. Total energy = 9829.7269 kcal/mol (9818.6204 without restraints) Performing minimization step: 560. Total energy = 9819.3025 kcal/mol (9808.2048 without restraints) Performing minimization step: 561. Total energy = 9808.9014 kcal/mol (9797.8125 without restraints) Performing minimization step: 562. Total energy = 9798.5239 kcal/mol (9787.4438 without restraints) Performing minimization step: 563. Total energy = 9788.1695 kcal/mol (9777.0981 without restraints) Performing minimization step: 564. Total energy = 9777.8383 kcal/mol (9766.7756 without restraints) Performing minimization step: 565. Total energy = 9767.5300 kcal/mol (9756.4760 without restraints) Performing minimization step: 566. Total energy = 9757.2450 kcal/mol (9746.1997 without restraints) Performing minimization step: 567. Total energy = 9746.9834 kcal/mol (9735.9466 without restraints) Performing minimization step: 568. Total energy = 9736.7439 kcal/mol (9725.7158 without restraints) Performing minimization step: 569. Total energy = 9726.5276 kcal/mol (9715.5083 without restraints) Performing minimization step: 570. Total energy = 9716.3340 kcal/mol (9705.3231 without restraints) Performing minimization step: 571. Total energy = 9706.1624 kcal/mol (9695.1601 without restraints) Performing minimization step: 572. Total energy = 9696.0146 kcal/mol (9685.0207 without restraints) Performing minimization step: 573. Total energy = 9685.8894 kcal/mol (9674.9041 without restraints) Performing minimization step: 574. Total energy = 9675.7863 kcal/mol (9664.8095 without restraints) Performing minimization step: 575. Total energy = 9665.7053 kcal/mol (9654.7369 without restraints) Performing minimization step: 576. Total energy = 9655.6473 kcal/mol (9644.6873 without restraints) Performing minimization step: 577. Total energy = 9645.6110 kcal/mol (9634.6594 without restraints) Performing minimization step: 578. Total energy = 9635.5969 kcal/mol (9624.6537 without restraints) Performing minimization step: 579. Total energy = 9625.6046 kcal/mol (9614.6696 without restraints) Performing minimization step: 580. Total energy = 9615.6346 kcal/mol (9604.7082 without restraints) Performing minimization step: 581. Total energy = 9605.6864 kcal/mol (9594.7683 without restraints) Performing minimization step: 582. Total energy = 9595.7602 kcal/mol (9584.8503 without restraints) Performing minimization step: 583. Total energy = 9585.8557 kcal/mol (9574.9541 without restraints) Performing minimization step: 584. Total energy = 9575.9730 kcal/mol (9565.0796 without restraints) Performing minimization step: 585. Total energy = 9566.1121 kcal/mol (9555.2269 without restraints) Performing minimization step: 586. Total energy = 9556.2724 kcal/mol (9545.3955 without restraints) Performing minimization step: 587. Total energy = 9546.4542 kcal/mol (9535.5853 without restraints) Performing minimization step: 588. Total energy = 9536.6577 kcal/mol (9525.7970 without restraints) Performing minimization step: 589. Total energy = 9526.8825 kcal/mol (9516.0299 without restraints) Performing minimization step: 590. Total energy = 9517.1289 kcal/mol (9506.2844 without restraints) Performing minimization step: 591. Total energy = 9507.3957 kcal/mol (9496.5593 without restraints) Performing minimization step: 592. Total energy = 9497.6840 kcal/mol (9486.8556 without restraints) Performing minimization step: 593. Total energy = 9487.9931 kcal/mol (9477.1728 without restraints) Performing minimization step: 594. Total energy = 9478.3233 kcal/mol (9467.5109 without restraints) Performing minimization step: 595. Total energy = 9468.6742 kcal/mol (9457.8698 without restraints) Performing minimization step: 596. Total energy = 9459.0465 kcal/mol (9448.2503 without restraints) Performing minimization step: 597. Total energy = 9449.4394 kcal/mol (9438.6509 without restraints) Performing minimization step: 598. Total energy = 9439.8527 kcal/mol (9429.0722 without restraints) Performing minimization step: 599. Total energy = 9430.2867 kcal/mol (9419.5139 without restraints) Performing minimization step: 600. Total energy = 9420.7412 kcal/mol (9409.9765 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 601. Total energy = 9411.2161 kcal/mol (9400.4591 without restraints) Performing minimization step: 602. Total energy = 9401.7112 kcal/mol (9390.9621 without restraints) Performing minimization step: 603. Total energy = 9392.2273 kcal/mol (9381.4859 without restraints) Performing minimization step: 604. Total energy = 9382.7630 kcal/mol (9372.0293 without restraints) Performing minimization step: 605. Total energy = 9373.3189 kcal/mol (9362.5929 without restraints) Performing minimization step: 606. Total energy = 9363.8948 kcal/mol (9353.1766 without restraints) Performing minimization step: 607. Total energy = 9354.4911 kcal/mol (9343.7804 without restraints) Performing minimization step: 608. Total energy = 9345.1070 kcal/mol (9334.4042 without restraints) Performing minimization step: 609. Total energy = 9335.7427 kcal/mol (9325.0474 without restraints) Performing minimization step: 610. Total energy = 9326.3989 kcal/mol (9315.7113 without restraints) Performing minimization step: 611. Total energy = 9317.0744 kcal/mol (9306.3945 without restraints) Performing minimization step: 612. Total energy = 9307.7691 kcal/mol (9297.0966 without restraints) Performing minimization step: 613. Total energy = 9298.4836 kcal/mol (9287.8188 without restraints) Performing minimization step: 614. Total energy = 9289.2180 kcal/mol (9278.5607 without restraints) Performing minimization step: 615. Total energy = 9279.9717 kcal/mol (9269.3220 without restraints) Performing minimization step: 616. Total energy = 9270.7452 kcal/mol (9260.1030 without restraints) Performing minimization step: 617. Total energy = 9261.5380 kcal/mol (9250.9031 without restraints) Performing minimization step: 618. Total energy = 9252.3494 kcal/mol (9241.7220 without restraints) Performing minimization step: 619. Total energy = 9243.1798 kcal/mol (9232.5599 without restraints) Performing minimization step: 620. Total energy = 9234.0297 kcal/mol (9223.4172 without restraints) Performing minimization step: 621. Total energy = 9224.8985 kcal/mol (9214.2933 without restraints) Performing minimization step: 622. Total energy = 9215.7858 kcal/mol (9205.1879 without restraints) Performing minimization step: 623. Total energy = 9206.6923 kcal/mol (9196.1018 without restraints) Performing minimization step: 624. Total energy = 9197.6178 kcal/mol (9187.0346 without restraints) Performing minimization step: 625. Total energy = 9188.5619 kcal/mol (9177.9859 without restraints) Performing minimization step: 626. Total energy = 9179.5245 kcal/mol (9168.9559 without restraints) Performing minimization step: 627. Total energy = 9170.5062 kcal/mol (9159.9448 without restraints) Performing minimization step: 628. Total energy = 9161.5062 kcal/mol (9150.9520 without restraints) Performing minimization step: 629. Total energy = 9152.5247 kcal/mol (9141.9777 without restraints) Performing minimization step: 630. Total energy = 9143.5617 kcal/mol (9133.0219 without restraints) Performing minimization step: 631. Total energy = 9134.6174 kcal/mol (9124.0847 without restraints) Performing minimization step: 632. Total energy = 9125.6909 kcal/mol (9115.1656 without restraints) Performing minimization step: 633. Total energy = 9116.7828 kcal/mol (9106.2644 without restraints) Performing minimization step: 634. Total energy = 9107.8928 kcal/mol (9097.3816 without restraints) Performing minimization step: 635. Total energy = 9099.0211 kcal/mol (9088.5169 without restraints) Performing minimization step: 636. Total energy = 9090.1667 kcal/mol (9079.6695 without restraints) Performing minimization step: 637. Total energy = 9081.3307 kcal/mol (9070.8404 without restraints) Performing minimization step: 638. Total energy = 9072.5126 kcal/mol (9062.0294 without restraints) Performing minimization step: 639. Total energy = 9063.7118 kcal/mol (9053.2356 without restraints) Performing minimization step: 640. Total energy = 9054.9291 kcal/mol (9044.4597 without restraints) Performing minimization step: 641. Total energy = 9046.1644 kcal/mol (9035.7020 without restraints) Performing minimization step: 642. Total energy = 9037.4173 kcal/mol (9026.9618 without restraints) Performing minimization step: 643. Total energy = 9028.6875 kcal/mol (9018.2390 without restraints) Performing minimization step: 644. Total energy = 9019.9752 kcal/mol (9009.5336 without restraints) Performing minimization step: 645. Total energy = 9011.2800 kcal/mol (9000.8452 without restraints) Performing minimization step: 646. Total energy = 9002.6031 kcal/mol (8992.1753 without restraints) Performing minimization step: 647. Total energy = 8993.9434 kcal/mol (8983.5222 without restraints) Performing minimization step: 648. Total energy = 8985.3006 kcal/mol (8974.8862 without restraints) Performing minimization step: 649. Total energy = 8976.6749 kcal/mol (8966.2673 without restraints) Performing minimization step: 650. Total energy = 8968.0662 kcal/mol (8957.6653 without restraints) Performing minimization step: 651. Total energy = 8959.4749 kcal/mol (8949.0808 without restraints) Performing minimization step: 652. Total energy = 8950.9003 kcal/mol (8940.5128 without restraints) Performing minimization step: 653. Total energy = 8942.3426 kcal/mol (8931.9619 without restraints) Performing minimization step: 654. Total energy = 8933.8017 kcal/mol (8923.4275 without restraints) Performing minimization step: 655. Total energy = 8925.2774 kcal/mol (8914.9099 without restraints) Performing minimization step: 656. Total energy = 8916.7701 kcal/mol (8906.4092 without restraints) Performing minimization step: 657. Total energy = 8908.2793 kcal/mol (8897.9251 without restraints) Performing minimization step: 658. Total energy = 8899.8055 kcal/mol (8889.4578 without restraints) Performing minimization step: 659. Total energy = 8891.3480 kcal/mol (8881.0070 without restraints) Performing minimization step: 660. Total energy = 8882.9073 kcal/mol (8872.5727 without restraints) Performing minimization step: 661. Total energy = 8874.4832 kcal/mol (8864.1550 without restraints) Performing minimization step: 662. Total energy = 8866.0750 kcal/mol (8855.7535 without restraints) Performing minimization step: 663. Total energy = 8857.6834 kcal/mol (8847.3684 without restraints) Performing minimization step: 664. Total energy = 8849.3079 kcal/mol (8838.9993 without restraints) Performing minimization step: 665. Total energy = 8840.9485 kcal/mol (8830.6465 without restraints) Performing minimization step: 666. Total energy = 8832.6058 kcal/mol (8822.3102 without restraints) Performing minimization step: 667. Total energy = 8824.2787 kcal/mol (8813.9894 without restraints) Performing minimization step: 668. Total energy = 8815.9673 kcal/mol (8805.6841 without restraints) Performing minimization step: 669. Total energy = 8807.6718 kcal/mol (8797.3952 without restraints) Performing minimization step: 670. Total energy = 8799.3924 kcal/mol (8789.1221 without restraints) Performing minimization step: 671. Total energy = 8791.1288 kcal/mol (8780.8649 without restraints) Performing minimization step: 672. Total energy = 8782.8810 kcal/mol (8772.6233 without restraints) Performing minimization step: 673. Total energy = 8774.6488 kcal/mol (8764.3975 without restraints) Performing minimization step: 674. Total energy = 8766.4321 kcal/mol (8756.1870 without restraints) Performing minimization step: 675. Total energy = 8758.2312 kcal/mol (8747.9922 without restraints) Performing minimization step: 676. Total energy = 8750.0456 kcal/mol (8739.8129 without restraints) Performing minimization step: 677. Total energy = 8741.8760 kcal/mol (8731.6496 without restraints) Performing minimization step: 678. Total energy = 8733.7217 kcal/mol (8723.5014 without restraints) Performing minimization step: 679. Total energy = 8725.5823 kcal/mol (8715.3683 without restraints) Performing minimization step: 680. Total energy = 8717.4584 kcal/mol (8707.2505 without restraints) Performing minimization step: 681. Total energy = 8709.3501 kcal/mol (8699.1483 without restraints) Performing minimization step: 682. Total energy = 8701.2572 kcal/mol (8691.0615 without restraints) Performing minimization step: 683. Total energy = 8693.1791 kcal/mol (8682.9894 without restraints) Performing minimization step: 684. Total energy = 8685.1162 kcal/mol (8674.9326 without restraints) Performing minimization step: 685. Total energy = 8677.0677 kcal/mol (8666.8901 without restraints) Performing minimization step: 686. Total energy = 8669.0345 kcal/mol (8658.8631 without restraints) Performing minimization step: 687. Total energy = 8661.0163 kcal/mol (8650.8508 without restraints) Performing minimization step: 688. Total energy = 8653.0122 kcal/mol (8642.8528 without restraints) Performing minimization step: 689. Total energy = 8645.0242 kcal/mol (8634.8708 without restraints) Performing minimization step: 690. Total energy = 8637.0507 kcal/mol (8626.9032 without restraints) Performing minimization step: 691. Total energy = 8629.0921 kcal/mol (8618.9506 without restraints) Performing minimization step: 692. Total energy = 8621.1474 kcal/mol (8611.0118 without restraints) Performing minimization step: 693. Total energy = 8613.2177 kcal/mol (8603.0878 without restraints) Performing minimization step: 694. Total energy = 8605.3019 kcal/mol (8595.1779 without restraints) Performing minimization step: 695. Total energy = 8597.4005 kcal/mol (8587.2825 without restraints) Performing minimization step: 696. Total energy = 8589.5139 kcal/mol (8579.4018 without restraints) Performing minimization step: 697. Total energy = 8581.6420 kcal/mol (8571.5357 without restraints) Performing minimization step: 698. Total energy = 8573.7843 kcal/mol (8563.6837 without restraints) Performing minimization step: 699. Total energy = 8565.9408 kcal/mol (8555.8461 without restraints) Performing minimization step: 700. Total energy = 8558.1115 kcal/mol (8548.0226 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 701. Total energy = 8550.2964 kcal/mol (8540.2132 without restraints) Performing minimization step: 702. Total energy = 8542.4956 kcal/mol (8532.4182 without restraints) Performing minimization step: 703. Total energy = 8534.7094 kcal/mol (8524.6377 without restraints) Performing minimization step: 704. Total energy = 8526.9363 kcal/mol (8516.8703 without restraints) Performing minimization step: 705. Total energy = 8519.1775 kcal/mol (8509.1172 without restraints) Performing minimization step: 706. Total energy = 8511.4322 kcal/mol (8501.3776 without restraints) Performing minimization step: 707. Total energy = 8503.7011 kcal/mol (8493.6521 without restraints) Performing minimization step: 708. Total energy = 8495.9836 kcal/mol (8485.9403 without restraints) Performing minimization step: 709. Total energy = 8488.2800 kcal/mol (8478.2423 without restraints) Performing minimization step: 710. Total energy = 8480.5903 kcal/mol (8470.5583 without restraints) Performing minimization step: 711. Total energy = 8472.9140 kcal/mol (8462.8875 without restraints) Performing minimization step: 712. Total energy = 8465.2514 kcal/mol (8455.2304 without restraints) Performing minimization step: 713. Total energy = 8457.6021 kcal/mol (8447.5867 without restraints) Performing minimization step: 714. Total energy = 8449.9664 kcal/mol (8439.9565 without restraints) Performing minimization step: 715. Total energy = 8442.3444 kcal/mol (8432.3401 without restraints) Performing minimization step: 716. Total energy = 8434.7355 kcal/mol (8424.7367 without restraints) Performing minimization step: 717. Total energy = 8427.1401 kcal/mol (8417.1465 without restraints) Performing minimization step: 718. Total energy = 8419.5573 kcal/mol (8409.5694 without restraints) Performing minimization step: 719. Total energy = 8411.9882 kcal/mol (8402.0058 without restraints) Performing minimization step: 720. Total energy = 8404.4325 kcal/mol (8394.4556 without restraints) Performing minimization step: 721. Total energy = 8396.8898 kcal/mol (8386.9183 without restraints) Performing minimization step: 722. Total energy = 8389.3604 kcal/mol (8379.3942 without restraints) Performing minimization step: 723. Total energy = 8381.8437 kcal/mol (8371.8827 without restraints) Performing minimization step: 724. Total energy = 8374.3401 kcal/mol (8364.3847 without restraints) Performing minimization step: 725. Total energy = 8366.8493 kcal/mol (8356.8993 without restraints) Performing minimization step: 726. Total energy = 8359.3722 kcal/mol (8349.4278 without restraints) Performing minimization step: 727. Total energy = 8351.9080 kcal/mol (8341.9688 without restraints) Performing minimization step: 728. Total energy = 8344.4563 kcal/mol (8334.5222 without restraints) Performing minimization step: 729. Total energy = 8337.0175 kcal/mol (8327.0888 without restraints) Performing minimization step: 730. Total energy = 8329.5915 kcal/mol (8319.6681 without restraints) Performing minimization step: 731. Total energy = 8322.1780 kcal/mol (8312.2597 without restraints) Performing minimization step: 732. Total energy = 8314.7773 kcal/mol (8304.8643 without restraints) Performing minimization step: 733. Total energy = 8307.3888 kcal/mol (8297.4811 without restraints) Performing minimization step: 734. Total energy = 8300.0134 kcal/mol (8290.1109 without restraints) Performing minimization step: 735. Total energy = 8292.6500 kcal/mol (8282.7527 without restraints) Performing minimization step: 736. Total energy = 8285.2989 kcal/mol (8275.4066 without restraints) Performing minimization step: 737. Total energy = 8277.9603 kcal/mol (8268.0735 without restraints) Performing minimization step: 738. Total energy = 8270.6353 kcal/mol (8260.7536 without restraints) Performing minimization step: 739. Total energy = 8263.3218 kcal/mol (8253.4452 without restraints) Performing minimization step: 740. Total energy = 8256.0204 kcal/mol (8246.1489 without restraints) Performing minimization step: 741. Total energy = 8248.7315 kcal/mol (8238.8651 without restraints) Performing minimization step: 742. Total energy = 8241.4547 kcal/mol (8231.5935 without restraints) Performing minimization step: 743. Total energy = 8234.1901 kcal/mol (8224.3339 without restraints) Performing minimization step: 744. Total energy = 8226.9377 kcal/mol (8217.0867 without restraints) Performing minimization step: 745. Total energy = 8219.6974 kcal/mol (8209.8513 without restraints) Performing minimization step: 746. Total energy = 8212.4692 kcal/mol (8202.6283 without restraints) Performing minimization step: 747. Total energy = 8205.2527 kcal/mol (8195.4167 without restraints) Performing minimization step: 748. Total energy = 8198.0480 kcal/mol (8188.2170 without restraints) Performing minimization step: 749. Total energy = 8190.8554 kcal/mol (8181.0294 without restraints) Performing minimization step: 750. Total energy = 8183.6744 kcal/mol (8173.8533 without restraints) Performing minimization step: 751. Total energy = 8176.5054 kcal/mol (8166.6894 without restraints) Performing minimization step: 752. Total energy = 8169.3481 kcal/mol (8159.5370 without restraints) Performing minimization step: 753. Total energy = 8162.2031 kcal/mol (8152.3971 without restraints) Performing minimization step: 754. Total energy = 8155.0697 kcal/mol (8145.2686 without restraints) Performing minimization step: 755. Total energy = 8147.9478 kcal/mol (8138.1515 without restraints) Performing minimization step: 756. Total energy = 8140.8382 kcal/mol (8131.0469 without restraints) Performing minimization step: 757. Total energy = 8133.7394 kcal/mol (8123.9527 without restraints) Performing minimization step: 758. Total energy = 8126.6520 kcal/mol (8116.8704 without restraints) Performing minimization step: 759. Total energy = 8119.5765 kcal/mol (8109.7997 without restraints) Performing minimization step: 760. Total energy = 8112.5125 kcal/mol (8102.7405 without restraints) Performing minimization step: 761. Total energy = 8105.4594 kcal/mol (8095.6923 without restraints) Performing minimization step: 762. Total energy = 8098.4175 kcal/mol (8088.6553 without restraints) Performing minimization step: 763. Total energy = 8091.3876 kcal/mol (8081.6302 without restraints) Performing minimization step: 764. Total energy = 8084.3685 kcal/mol (8074.6159 without restraints) Performing minimization step: 765. Total energy = 8077.3609 kcal/mol (8067.6130 without restraints) Performing minimization step: 766. Total energy = 8070.3645 kcal/mol (8060.6214 without restraints) Performing minimization step: 767. Total energy = 8063.3794 kcal/mol (8053.6410 without restraints) Performing minimization step: 768. Total energy = 8056.4052 kcal/mol (8046.6716 without restraints) Performing minimization step: 769. Total energy = 8049.4423 kcal/mol (8039.7134 without restraints) Performing minimization step: 770. Total energy = 8042.4904 kcal/mol (8032.7662 without restraints) Performing minimization step: 771. Total energy = 8035.5494 kcal/mol (8025.8299 without restraints) Performing minimization step: 772. Total energy = 8028.6192 kcal/mol (8018.9043 without restraints) Performing minimization step: 773. Total energy = 8021.7002 kcal/mol (8011.9902 without restraints) Performing minimization step: 774. Total energy = 8014.7927 kcal/mol (8005.0873 without restraints) Performing minimization step: 775. Total energy = 8007.8958 kcal/mol (7998.1949 without restraints) Performing minimization step: 776. Total energy = 8001.0094 kcal/mol (7991.3132 without restraints) Performing minimization step: 777. Total energy = 7994.1335 kcal/mol (7984.4421 without restraints) Performing minimization step: 778. Total energy = 7987.2691 kcal/mol (7977.5822 without restraints) Performing minimization step: 779. Total energy = 7980.4157 kcal/mol (7970.7334 without restraints) Performing minimization step: 780. Total energy = 7973.5729 kcal/mol (7963.8952 without restraints) Performing minimization step: 781. Total energy = 7966.7403 kcal/mol (7957.0672 without restraints) Performing minimization step: 782. Total energy = 7959.9187 kcal/mol (7950.2500 without restraints) Performing minimization step: 783. Total energy = 7953.1074 kcal/mol (7943.4434 without restraints) Performing minimization step: 784. Total energy = 7946.3073 kcal/mol (7936.6478 without restraints) Performing minimization step: 785. Total energy = 7939.5175 kcal/mol (7929.8627 without restraints) Performing minimization step: 786. Total energy = 7932.7380 kcal/mol (7923.0876 without restraints) Performing minimization step: 787. Total energy = 7925.9689 kcal/mol (7916.3230 without restraints) Performing minimization step: 788. Total energy = 7919.2105 kcal/mol (7909.5692 without restraints) Performing minimization step: 789. Total energy = 7912.4623 kcal/mol (7902.8251 without restraints) Performing minimization step: 790. Total energy = 7905.7239 kcal/mol (7896.0914 without restraints) Performing minimization step: 791. Total energy = 7898.9964 kcal/mol (7889.3685 without restraints) Performing minimization step: 792. Total energy = 7892.2791 kcal/mol (7882.6555 without restraints) Performing minimization step: 793. Total energy = 7885.5719 kcal/mol (7875.9531 without restraints) Performing minimization step: 794. Total energy = 7878.8754 kcal/mol (7869.2607 without restraints) Performing minimization step: 795. Total energy = 7872.1891 kcal/mol (7862.5789 without restraints) Performing minimization step: 796. Total energy = 7865.5125 kcal/mol (7855.9067 without restraints) Performing minimization step: 797. Total energy = 7858.8462 kcal/mol (7849.2447 without restraints) Performing minimization step: 798. Total energy = 7852.1900 kcal/mol (7842.5929 without restraints) Performing minimization step: 799. Total energy = 7845.5437 kcal/mol (7835.9510 without restraints) Performing minimization step: 800. Total energy = 7838.9073 kcal/mol (7829.3190 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 801. Total energy = 7832.2813 kcal/mol (7822.6973 without restraints) Performing minimization step: 802. Total energy = 7825.6651 kcal/mol (7816.0855 without restraints) Performing minimization step: 803. Total energy = 7819.0590 kcal/mol (7809.4836 without restraints) Performing minimization step: 804. Total energy = 7812.4629 kcal/mol (7802.8921 without restraints) Performing minimization step: 805. Total energy = 7805.8766 kcal/mol (7796.3099 without restraints) Performing minimization step: 806. Total energy = 7799.3001 kcal/mol (7789.7378 without restraints) Performing minimization step: 807. Total energy = 7792.7333 kcal/mol (7783.1752 without restraints) Performing minimization step: 808. Total energy = 7786.1765 kcal/mol (7776.6227 without restraints) Performing minimization step: 809. Total energy = 7779.6291 kcal/mol (7770.0797 without restraints) Performing minimization step: 810. Total energy = 7773.0915 kcal/mol (7763.5462 without restraints) Performing minimization step: 811. Total energy = 7766.5636 kcal/mol (7757.0225 without restraints) Performing minimization step: 812. Total energy = 7760.0454 kcal/mol (7750.5086 without restraints) Performing minimization step: 813. Total energy = 7753.5367 kcal/mol (7744.0041 without restraints) Performing minimization step: 814. Total energy = 7747.0380 kcal/mol (7737.5096 without restraints) Performing minimization step: 815. Total energy = 7740.5485 kcal/mol (7731.0243 without restraints) Performing minimization step: 816. Total energy = 7734.0686 kcal/mol (7724.5486 without restraints) Performing minimization step: 817. Total energy = 7727.5981 kcal/mol (7718.0822 without restraints) Performing minimization step: 818. Total energy = 7721.1370 kcal/mol (7711.6252 without restraints) Performing minimization step: 819. Total energy = 7714.6854 kcal/mol (7705.1780 without restraints) Performing minimization step: 820. Total energy = 7708.2432 kcal/mol (7698.7399 without restraints) Performing minimization step: 821. Total energy = 7701.8106 kcal/mol (7692.3115 without restraints) Performing minimization step: 822. Total energy = 7695.3870 kcal/mol (7685.8919 without restraints) Performing minimization step: 823. Total energy = 7688.9733 kcal/mol (7679.4824 without restraints) Performing minimization step: 824. Total energy = 7682.5687 kcal/mol (7673.0819 without restraints) Performing minimization step: 825. Total energy = 7676.1730 kcal/mol (7666.6904 without restraints) Performing minimization step: 826. Total energy = 7669.7869 kcal/mol (7660.3084 without restraints) Performing minimization step: 827. Total energy = 7663.4097 kcal/mol (7653.9354 without restraints) Performing minimization step: 828. Total energy = 7657.0420 kcal/mol (7647.5717 without restraints) Performing minimization step: 829. Total energy = 7650.6833 kcal/mol (7641.2169 without restraints) Performing minimization step: 830. Total energy = 7644.3338 kcal/mol (7634.8715 without restraints) Performing minimization step: 831. Total energy = 7637.9933 kcal/mol (7628.5350 without restraints) Performing minimization step: 832. Total energy = 7631.6617 kcal/mol (7622.2075 without restraints) Performing minimization step: 833. Total energy = 7625.3395 kcal/mol (7615.8894 without restraints) Performing minimization step: 834. Total energy = 7619.0263 kcal/mol (7609.5803 without restraints) Performing minimization step: 835. Total energy = 7612.7222 kcal/mol (7603.2801 without restraints) Performing minimization step: 836. Total energy = 7606.4270 kcal/mol (7596.9889 without restraints) Performing minimization step: 837. Total energy = 7600.1410 kcal/mol (7590.7070 without restraints) Performing minimization step: 838. Total energy = 7593.8636 kcal/mol (7584.4336 without restraints) Performing minimization step: 839. Total energy = 7587.5952 kcal/mol (7578.1692 without restraints) Performing minimization step: 840. Total energy = 7581.3352 kcal/mol (7571.9131 without restraints) Performing minimization step: 841. Total energy = 7575.0843 kcal/mol (7565.6662 without restraints) Performing minimization step: 842. Total energy = 7568.8420 kcal/mol (7559.4278 without restraints) Performing minimization step: 843. Total energy = 7562.6088 kcal/mol (7553.1987 without restraints) Performing minimization step: 844. Total energy = 7556.3843 kcal/mol (7546.9781 without restraints) Performing minimization step: 845. Total energy = 7550.1690 kcal/mol (7540.7667 without restraints) Performing minimization step: 846. Total energy = 7543.9618 kcal/mol (7534.5635 without restraints) Performing minimization step: 847. Total energy = 7537.7639 kcal/mol (7528.3694 without restraints) Performing minimization step: 848. Total energy = 7531.5741 kcal/mol (7522.1835 without restraints) Performing minimization step: 849. Total energy = 7525.3933 kcal/mol (7516.0066 without restraints) Performing minimization step: 850. Total energy = 7519.2209 kcal/mol (7509.8381 without restraints) Performing minimization step: 851. Total energy = 7513.0572 kcal/mol (7503.6782 without restraints) Performing minimization step: 852. Total energy = 7506.9021 kcal/mol (7497.5271 without restraints) Performing minimization step: 853. Total energy = 7500.7559 kcal/mol (7491.3847 without restraints) Performing minimization step: 854. Total energy = 7494.6179 kcal/mol (7485.2506 without restraints) Performing minimization step: 855. Total energy = 7488.4882 kcal/mol (7479.1248 without restraints) Performing minimization step: 856. Total energy = 7482.3671 kcal/mol (7473.0075 without restraints) Performing minimization step: 857. Total energy = 7476.2546 kcal/mol (7466.8989 without restraints) Performing minimization step: 858. Total energy = 7470.1504 kcal/mol (7460.7983 without restraints) Performing minimization step: 859. Total energy = 7464.0542 kcal/mol (7454.7060 without restraints) Performing minimization step: 860. Total energy = 7457.9665 kcal/mol (7448.6222 without restraints) Performing minimization step: 861. Total energy = 7451.8872 kcal/mol (7442.5466 without restraints) Performing minimization step: 862. Total energy = 7445.8161 kcal/mol (7436.4794 without restraints) Performing minimization step: 863. Total energy = 7439.7534 kcal/mol (7430.4205 without restraints) Performing minimization step: 864. Total energy = 7433.6990 kcal/mol (7424.3699 without restraints) Performing minimization step: 865. Total energy = 7427.6525 kcal/mol (7418.3272 without restraints) Performing minimization step: 866. Total energy = 7421.6146 kcal/mol (7412.2931 without restraints) Performing minimization step: 867. Total energy = 7415.5849 kcal/mol (7406.2670 without restraints) Performing minimization step: 868. Total energy = 7409.5636 kcal/mol (7400.2495 without restraints) Performing minimization step: 869. Total energy = 7403.5505 kcal/mol (7394.2402 without restraints) Performing minimization step: 870. Total energy = 7397.5454 kcal/mol (7388.2388 without restraints) Performing minimization step: 871. Total energy = 7391.5484 kcal/mol (7382.2456 without restraints) Performing minimization step: 872. Total energy = 7385.5599 kcal/mol (7376.2607 without restraints) Performing minimization step: 873. Total energy = 7379.5790 kcal/mol (7370.2836 without restraints) Performing minimization step: 874. Total energy = 7373.6062 kcal/mol (7364.3146 without restraints) Performing minimization step: 875. Total energy = 7367.6419 kcal/mol (7358.3538 without restraints) Performing minimization step: 876. Total energy = 7361.6848 kcal/mol (7352.4004 without restraints) Performing minimization step: 877. Total energy = 7355.7360 kcal/mol (7346.4554 without restraints) Performing minimization step: 878. Total energy = 7349.7950 kcal/mol (7340.5181 without restraints) Performing minimization step: 879. Total energy = 7343.8621 kcal/mol (7334.5889 without restraints) Performing minimization step: 880. Total energy = 7337.9373 kcal/mol (7328.6677 without restraints) Performing minimization step: 881. Total energy = 7332.0203 kcal/mol (7322.7544 without restraints) Performing minimization step: 882. Total energy = 7326.1111 kcal/mol (7316.8489 without restraints) Performing minimization step: 883. Total energy = 7320.2098 kcal/mol (7310.9512 without restraints) Performing minimization step: 884. Total energy = 7314.3162 kcal/mol (7305.0612 without restraints) Performing minimization step: 885. Total energy = 7308.4307 kcal/mol (7299.1794 without restraints) Performing minimization step: 886. Total energy = 7302.5528 kcal/mol (7293.3052 without restraints) Performing minimization step: 887. Total energy = 7296.6828 kcal/mol (7287.4388 without restraints) Performing minimization step: 888. Total energy = 7290.8205 kcal/mol (7281.5801 without restraints) Performing minimization step: 889. Total energy = 7284.9661 kcal/mol (7275.7293 without restraints) Performing minimization step: 890. Total energy = 7279.1192 kcal/mol (7269.8861 without restraints) Performing minimization step: 891. Total energy = 7273.2802 kcal/mol (7264.0506 without restraints) Performing minimization step: 892. Total energy = 7267.4489 kcal/mol (7258.2229 without restraints) Performing minimization step: 893. Total energy = 7261.6251 kcal/mol (7252.4029 without restraints) Performing minimization step: 894. Total energy = 7255.8089 kcal/mol (7246.5901 without restraints) Performing minimization step: 895. Total energy = 7250.0006 kcal/mol (7240.7854 without restraints) Performing minimization step: 896. Total energy = 7244.1995 kcal/mol (7234.9877 without restraints) Performing minimization step: 897. Total energy = 7238.4061 kcal/mol (7229.1980 without restraints) Performing minimization step: 898. Total energy = 7232.6205 kcal/mol (7223.4160 without restraints) Performing minimization step: 899. Total energy = 7226.8423 kcal/mol (7217.6414 without restraints) Performing minimization step: 900. Total energy = 7221.0717 kcal/mol (7211.8743 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 901. Total energy = 7215.3086 kcal/mol (7206.1148 without restraints) Performing minimization step: 902. Total energy = 7209.5534 kcal/mol (7200.3630 without restraints) Performing minimization step: 903. Total energy = 7203.8052 kcal/mol (7194.6183 without restraints) Performing minimization step: 904. Total energy = 7198.0646 kcal/mol (7188.8813 without restraints) Performing minimization step: 905. Total energy = 7192.3313 kcal/mol (7183.1515 without restraints) Performing minimization step: 906. Total energy = 7186.6053 kcal/mol (7177.4290 without restraints) Performing minimization step: 907. Total energy = 7180.8866 kcal/mol (7171.7138 without restraints) Performing minimization step: 908. Total energy = 7175.1754 kcal/mol (7166.0061 without restraints) Performing minimization step: 909. Total energy = 7169.4715 kcal/mol (7160.3057 without restraints) Performing minimization step: 910. Total energy = 7163.7748 kcal/mol (7154.6124 without restraints) Performing minimization step: 911. Total energy = 7158.0856 kcal/mol (7148.9268 without restraints) Performing minimization step: 912. Total energy = 7152.4042 kcal/mol (7143.2490 without restraints) Performing minimization step: 913. Total energy = 7146.7296 kcal/mol (7137.5778 without restraints) Performing minimization step: 914. Total energy = 7141.0623 kcal/mol (7131.9139 without restraints) Performing minimization step: 915. Total energy = 7135.4017 kcal/mol (7126.2568 without restraints) Performing minimization step: 916. Total energy = 7129.7486 kcal/mol (7120.6072 without restraints) Performing minimization step: 917. Total energy = 7124.1030 kcal/mol (7114.9650 without restraints) Performing minimization step: 918. Total energy = 7118.4645 kcal/mol (7109.3300 without restraints) Performing minimization step: 919. Total energy = 7112.8332 kcal/mol (7103.7021 without restraints) Performing minimization step: 920. Total energy = 7107.2089 kcal/mol (7098.0812 without restraints) Performing minimization step: 921. Total energy = 7101.5918 kcal/mol (7092.4676 without restraints) Performing minimization step: 922. Total energy = 7095.9819 kcal/mol (7086.8611 without restraints) Performing minimization step: 923. Total energy = 7090.3791 kcal/mol (7081.2617 without restraints) Performing minimization step: 924. Total energy = 7084.7830 kcal/mol (7075.6690 without restraints) Performing minimization step: 925. Total energy = 7079.1942 kcal/mol (7070.0837 without restraints) Performing minimization step: 926. Total energy = 7073.6126 kcal/mol (7064.5055 without restraints) Performing minimization step: 927. Total energy = 7068.0378 kcal/mol (7058.9341 without restraints) Performing minimization step: 928. Total energy = 7062.4700 kcal/mol (7053.3695 without restraints) Performing minimization step: 929. Total energy = 7056.9095 kcal/mol (7047.8127 without restraints) Performing minimization step: 930. Total energy = 7051.3561 kcal/mol (7042.2625 without restraints) Performing minimization step: 931. Total energy = 7045.8097 kcal/mol (7036.7195 without restraints) Performing minimization step: 932. Total energy = 7040.2698 kcal/mol (7031.1831 without restraints) Performing minimization step: 933. Total energy = 7034.7376 kcal/mol (7025.6543 without restraints) Performing minimization step: 934. Total energy = 7029.2119 kcal/mol (7020.1319 without restraints) Performing minimization step: 935. Total energy = 7023.6936 kcal/mol (7014.6171 without restraints) Performing minimization step: 936. Total energy = 7018.1817 kcal/mol (7009.1083 without restraints) Performing minimization step: 937. Total energy = 7012.6767 kcal/mol (7003.6067 without restraints) Performing minimization step: 938. Total energy = 7007.1785 kcal/mol (6998.1119 without restraints) Performing minimization step: 939. Total energy = 7001.6869 kcal/mol (6992.6236 without restraints) Performing minimization step: 940. Total energy = 6996.2025 kcal/mol (6987.1426 without restraints) Performing minimization step: 941. Total energy = 6990.7246 kcal/mol (6981.6681 without restraints) Performing minimization step: 942. Total energy = 6985.2542 kcal/mol (6976.2009 without restraints) Performing minimization step: 943. Total energy = 6979.7900 kcal/mol (6970.7400 without restraints) Performing minimization step: 944. Total energy = 6974.3321 kcal/mol (6965.2855 without restraints) Performing minimization step: 945. Total energy = 6968.8815 kcal/mol (6959.8382 without restraints) Performing minimization step: 946. Total energy = 6963.4378 kcal/mol (6954.3978 without restraints) Performing minimization step: 947. Total energy = 6958.0004 kcal/mol (6948.9637 without restraints) Performing minimization step: 948. Total energy = 6952.5701 kcal/mol (6943.5368 without restraints) Performing minimization step: 949. Total energy = 6947.1462 kcal/mol (6938.1161 without restraints) Performing minimization step: 950. Total energy = 6941.7289 kcal/mol (6932.7021 without restraints) Performing minimization step: 951. Total energy = 6936.3182 kcal/mol (6927.2945 without restraints) Performing minimization step: 952. Total energy = 6930.9146 kcal/mol (6921.8944 without restraints) Performing minimization step: 953. Total energy = 6925.5174 kcal/mol (6916.5004 without restraints) Performing minimization step: 954. Total energy = 6920.1264 kcal/mol (6911.1128 without restraints) Performing minimization step: 955. Total energy = 6914.7424 kcal/mol (6905.7321 without restraints) Performing minimization step: 956. Total energy = 6909.3651 kcal/mol (6900.3581 without restraints) Performing minimization step: 957. Total energy = 6903.9937 kcal/mol (6894.9899 without restraints) Performing minimization step: 958. Total energy = 6898.6292 kcal/mol (6889.6287 without restraints) Performing minimization step: 959. Total energy = 6893.2715 kcal/mol (6884.2742 without restraints) Performing minimization step: 960. Total energy = 6887.9203 kcal/mol (6878.9263 without restraints) Performing minimization step: 961. Total energy = 6882.5759 kcal/mol (6873.5851 without restraints) Performing minimization step: 962. Total energy = 6877.2375 kcal/mol (6868.2500 without restraints) Performing minimization step: 963. Total energy = 6871.9058 kcal/mol (6862.9216 without restraints) Performing minimization step: 964. Total energy = 6866.5806 kcal/mol (6857.5995 without restraints) Performing minimization step: 965. Total energy = 6861.2620 kcal/mol (6852.2842 without restraints) Performing minimization step: 966. Total energy = 6855.9496 kcal/mol (6846.9751 without restraints) Performing minimization step: 967. Total energy = 6850.6440 kcal/mol (6841.6727 without restraints) Performing minimization step: 968. Total energy = 6845.3444 kcal/mol (6836.3763 without restraints) Performing minimization step: 969. Total energy = 6840.0514 kcal/mol (6831.0865 without restraints) Performing minimization step: 970. Total energy = 6834.7648 kcal/mol (6825.8031 without restraints) Performing minimization step: 971. Total energy = 6829.4847 kcal/mol (6820.5264 without restraints) Performing minimization step: 972. Total energy = 6824.2107 kcal/mol (6815.2554 without restraints) Performing minimization step: 973. Total energy = 6818.9430 kcal/mol (6809.9910 without restraints) Performing minimization step: 974. Total energy = 6813.6817 kcal/mol (6804.7329 without restraints) Performing minimization step: 975. Total energy = 6808.4268 kcal/mol (6799.4812 without restraints) Performing minimization step: 976. Total energy = 6803.1785 kcal/mol (6794.2363 without restraints) Performing minimization step: 977. Total energy = 6797.9366 kcal/mol (6788.9974 without restraints) Performing minimization step: 978. Total energy = 6792.7006 kcal/mol (6783.7645 without restraints) Performing minimization step: 979. Total energy = 6787.4708 kcal/mol (6778.5380 without restraints) Performing minimization step: 980. Total energy = 6782.2471 kcal/mol (6773.3175 without restraints) Performing minimization step: 981. Total energy = 6777.0300 kcal/mol (6768.1035 without restraints) Performing minimization step: 982. Total energy = 6771.8191 kcal/mol (6762.8958 without restraints) Performing minimization step: 983. Total energy = 6766.6144 kcal/mol (6757.6942 without restraints) Performing minimization step: 984. Total energy = 6761.4155 kcal/mol (6752.4985 without restraints) Performing minimization step: 985. Total energy = 6756.2232 kcal/mol (6747.3095 without restraints) Performing minimization step: 986. Total energy = 6751.0370 kcal/mol (6742.1264 without restraints) Performing minimization step: 987. Total energy = 6745.8572 kcal/mol (6736.9496 without restraints) Performing minimization step: 988. Total energy = 6740.6834 kcal/mol (6731.7791 without restraints) Performing minimization step: 989. Total energy = 6735.5159 kcal/mol (6726.6150 without restraints) Performing minimization step: 990. Total energy = 6730.3539 kcal/mol (6721.4559 without restraints) Performing minimization step: 991. Total energy = 6725.1986 kcal/mol (6716.3037 without restraints) Performing minimization step: 992. Total energy = 6720.0494 kcal/mol (6711.1577 without restraints) Performing minimization step: 993. Total energy = 6714.9064 kcal/mol (6706.0179 without restraints) Performing minimization step: 994. Total energy = 6709.7692 kcal/mol (6700.8839 without restraints) Performing minimization step: 995. Total energy = 6704.6384 kcal/mol (6695.7561 without restraints) Performing minimization step: 996. Total energy = 6699.5134 kcal/mol (6690.6342 without restraints) Performing minimization step: 997. Total energy = 6694.3940 kcal/mol (6685.5177 without restraints) Performing minimization step: 998. Total energy = 6689.2805 kcal/mol (6680.4076 without restraints) Performing minimization step: 999. Total energy = 6684.1733 kcal/mol (6675.3034 without restraints) Performing minimization step: 1000. Total energy = 6679.0720 kcal/mol (6670.2052 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 6673.9767 kcal/mol (6665.1132 without restraints) Performing minimization step: 1002. Total energy = 6668.8879 kcal/mol (6660.0275 without restraints) Performing minimization step: 1003. Total energy = 6663.8052 kcal/mol (6654.9479 without restraints) Performing minimization step: 1004. Total energy = 6658.7286 kcal/mol (6649.8744 without restraints) Performing minimization step: 1005. Total energy = 6653.6576 kcal/mol (6644.8065 without restraints) Performing minimization step: 1006. Total energy = 6648.5922 kcal/mol (6639.7442 without restraints) Performing minimization step: 1007. Total energy = 6643.5330 kcal/mol (6634.6881 without restraints) Performing minimization step: 1008. Total energy = 6638.4799 kcal/mol (6629.6380 without restraints) Performing minimization step: 1009. Total energy = 6633.4331 kcal/mol (6624.5944 without restraints) Performing minimization step: 1010. Total energy = 6628.3922 kcal/mol (6619.5566 without restraints) Performing minimization step: 1011. Total energy = 6623.3571 kcal/mol (6614.5246 without restraints) Performing minimization step: 1012. Total energy = 6618.3278 kcal/mol (6609.4984 without restraints) Performing minimization step: 1013. Total energy = 6613.3040 kcal/mol (6604.4777 without restraints) Performing minimization step: 1014. Total energy = 6608.2866 kcal/mol (6599.4633 without restraints) Performing minimization step: 1015. Total energy = 6603.2746 kcal/mol (6594.4544 without restraints) Performing minimization step: 1016. Total energy = 6598.2684 kcal/mol (6589.4513 without restraints) Performing minimization step: 1017. Total energy = 6593.2682 kcal/mol (6584.4542 without restraints) Performing minimization step: 1018. Total energy = 6588.2737 kcal/mol (6579.4627 without restraints) Performing minimization step: 1019. Total energy = 6583.2849 kcal/mol (6574.4770 without restraints) Performing minimization step: 1020. Total energy = 6578.3024 kcal/mol (6569.4979 without restraints) Performing minimization step: 1021. Total energy = 6573.3254 kcal/mol (6564.5235 without restraints) Performing minimization step: 1022. Total energy = 6568.3541 kcal/mol (6559.5554 without restraints) Performing minimization step: 1023. Total energy = 6563.3885 kcal/mol (6554.5928 without restraints) Performing minimization step: 1024. Total energy = 6558.4279 kcal/mol (6549.6352 without restraints) Performing minimization step: 1025. Total energy = 6553.4739 kcal/mol (6544.6843 without restraints) Performing minimization step: 1026. Total energy = 6548.5253 kcal/mol (6539.7387 without restraints) Performing minimization step: 1027. Total energy = 6543.5824 kcal/mol (6534.7989 without restraints) Performing minimization step: 1028. Total energy = 6538.6455 kcal/mol (6529.8651 without restraints) Performing minimization step: 1029. Total energy = 6533.7142 kcal/mol (6524.9368 without restraints) Performing minimization step: 1030. Total energy = 6528.7885 kcal/mol (6520.0142 without restraints) Performing minimization step: 1031. Total energy = 6523.8686 kcal/mol (6515.0973 without restraints) Performing minimization step: 1032. Total energy = 6518.9543 kcal/mol (6510.1860 without restraints) Performing minimization step: 1033. Total energy = 6514.0456 kcal/mol (6505.2804 without restraints) Performing minimization step: 1034. Total energy = 6509.1419 kcal/mol (6500.3797 without restraints) Performing minimization step: 1035. Total energy = 6504.2441 kcal/mol (6495.4849 without restraints) Performing minimization step: 1036. Total energy = 6499.3517 kcal/mol (6490.5956 without restraints) Performing minimization step: 1037. Total energy = 6494.4651 kcal/mol (6485.7118 without restraints) Performing minimization step: 1038. Total energy = 6489.5845 kcal/mol (6480.8344 without restraints) Performing minimization step: 1039. Total energy = 6484.7096 kcal/mol (6475.9626 without restraints) Performing minimization step: 1040. Total energy = 6479.8407 kcal/mol (6471.0966 without restraints) Performing minimization step: 1041. Total energy = 6474.9771 kcal/mol (6466.2361 without restraints) Performing minimization step: 1042. Total energy = 6470.1193 kcal/mol (6461.3813 without restraints) Performing minimization step: 1043. Total energy = 6465.2666 kcal/mol (6456.5317 without restraints) Performing minimization step: 1044. Total energy = 6460.4196 kcal/mol (6451.6876 without restraints) Performing minimization step: 1045. Total energy = 6455.5778 kcal/mol (6446.8488 without restraints) Performing minimization step: 1046. Total energy = 6450.7418 kcal/mol (6442.0157 without restraints) Performing minimization step: 1047. Total energy = 6445.9114 kcal/mol (6437.1885 without restraints) Performing minimization step: 1048. Total energy = 6441.0868 kcal/mol (6432.3668 without restraints) Performing minimization step: 1049. Total energy = 6436.2673 kcal/mol (6427.5503 without restraints) Performing minimization step: 1050. Total energy = 6431.4533 kcal/mol (6422.7393 without restraints) Performing minimization step: 1051. Total energy = 6426.6450 kcal/mol (6417.9339 without restraints) Performing minimization step: 1052. Total energy = 6421.8419 kcal/mol (6413.1339 without restraints) Performing minimization step: 1053. Total energy = 6417.0440 kcal/mol (6408.3390 without restraints) Performing minimization step: 1054. Total energy = 6412.2520 kcal/mol (6403.5499 without restraints) Performing minimization step: 1055. Total energy = 6407.4648 kcal/mol (6398.7657 without restraints) Performing minimization step: 1056. Total energy = 6402.6833 kcal/mol (6393.9871 without restraints) Performing minimization step: 1057. Total energy = 6397.9076 kcal/mol (6389.2145 without restraints) Performing minimization step: 1058. Total energy = 6393.1377 kcal/mol (6384.4477 without restraints) Performing minimization step: 1059. Total energy = 6388.3729 kcal/mol (6379.6857 without restraints) Performing minimization step: 1060. Total energy = 6383.6132 kcal/mol (6374.9290 without restraints) Performing minimization step: 1061. Total energy = 6378.8594 kcal/mol (6370.1782 without restraints) Performing minimization step: 1062. Total energy = 6374.1104 kcal/mol (6365.4320 without restraints) Performing minimization step: 1063. Total energy = 6369.3668 kcal/mol (6360.6915 without restraints) Performing minimization step: 1064. Total energy = 6364.6286 kcal/mol (6355.9559 without restraints) Performing minimization step: 1065. Total energy = 6359.8960 kcal/mol (6351.2266 without restraints) Performing minimization step: 1066. Total energy = 6355.1686 kcal/mol (6346.5022 without restraints) Performing minimization step: 1067. Total energy = 6350.4463 kcal/mol (6341.7827 without restraints) Performing minimization step: 1068. Total energy = 6345.7295 kcal/mol (6337.0690 without restraints) Performing minimization step: 1069. Total energy = 6341.0179 kcal/mol (6332.3603 without restraints) Performing minimization step: 1070. Total energy = 6336.3121 kcal/mol (6327.6576 without restraints) Performing minimization step: 1071. Total energy = 6331.6114 kcal/mol (6322.9598 without restraints) Performing minimization step: 1072. Total energy = 6326.9161 kcal/mol (6318.2675 without restraints) Performing minimization step: 1073. Total energy = 6322.2260 kcal/mol (6313.5803 without restraints) Performing minimization step: 1074. Total energy = 6317.5410 kcal/mol (6308.8983 without restraints) Performing minimization step: 1075. Total energy = 6312.8614 kcal/mol (6304.2216 without restraints) Performing minimization step: 1076. Total energy = 6308.1870 kcal/mol (6299.5501 without restraints) Performing minimization step: 1077. Total energy = 6303.5179 kcal/mol (6294.8840 without restraints) Performing minimization step: 1078. Total energy = 6298.8549 kcal/mol (6290.2239 without restraints) Performing minimization step: 1079. Total energy = 6294.1965 kcal/mol (6285.5684 without restraints) Performing minimization step: 1080. Total energy = 6289.5428 kcal/mol (6280.9176 without restraints) Performing minimization step: 1081. Total energy = 6284.8946 kcal/mol (6276.2725 without restraints) Performing minimization step: 1082. Total energy = 6280.2514 kcal/mol (6271.6322 without restraints) Performing minimization step: 1083. Total energy = 6275.6138 kcal/mol (6266.9976 without restraints) Performing minimization step: 1084. Total energy = 6270.9814 kcal/mol (6262.3679 without restraints) Performing minimization step: 1085. Total energy = 6266.3536 kcal/mol (6257.7430 without restraints) Performing minimization step: 1086. Total energy = 6261.7313 kcal/mol (6253.1238 without restraints) Performing minimization step: 1087. Total energy = 6257.1143 kcal/mol (6248.5097 without restraints) Performing minimization step: 1088. Total energy = 6252.5021 kcal/mol (6243.9004 without restraints) Performing minimization step: 1089. Total energy = 6247.8954 kcal/mol (6239.2966 without restraints) Performing minimization step: 1090. Total energy = 6243.2941 kcal/mol (6234.6983 without restraints) Performing minimization step: 1091. Total energy = 6238.6979 kcal/mol (6230.1050 without restraints) Performing minimization step: 1092. Total energy = 6234.1065 kcal/mol (6225.5166 without restraints) Performing minimization step: 1093. Total energy = 6229.5199 kcal/mol (6220.9328 without restraints) Performing minimization step: 1094. Total energy = 6224.9389 kcal/mol (6216.3548 without restraints) Performing minimization step: 1095. Total energy = 6220.3632 kcal/mol (6211.7820 without restraints) Performing minimization step: 1096. Total energy = 6215.7922 kcal/mol (6207.2139 without restraints) Performing minimization step: 1097. Total energy = 6211.2264 kcal/mol (6202.6510 without restraints) Performing minimization step: 1098. Total energy = 6206.6658 kcal/mol (6198.0933 without restraints) Performing minimization step: 1099. Total energy = 6202.1100 kcal/mol (6193.5404 without restraints) Performing minimization step: 1100. Total energy = 6197.5600 kcal/mol (6188.9933 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 6193.0145 kcal/mol (6184.4507 without restraints) Performing minimization step: 1102. Total energy = 6188.4743 kcal/mol (6179.9134 without restraints) Performing minimization step: 1103. Total energy = 6183.9392 kcal/mol (6175.3812 without restraints) Performing minimization step: 1104. Total energy = 6179.4092 kcal/mol (6170.8542 without restraints) Performing minimization step: 1105. Total energy = 6174.8840 kcal/mol (6166.3318 without restraints) Performing minimization step: 1106. Total energy = 6170.3639 kcal/mol (6161.8146 without restraints) Performing minimization step: 1107. Total energy = 6165.8487 kcal/mol (6157.3023 without restraints) Performing minimization step: 1108. Total energy = 6161.3385 kcal/mol (6152.7950 without restraints) Performing minimization step: 1109. Total energy = 6156.8334 kcal/mol (6148.2928 without restraints) Performing minimization step: 1110. Total energy = 6152.3333 kcal/mol (6143.7955 without restraints) Performing minimization step: 1111. Total energy = 6147.8380 kcal/mol (6139.3032 without restraints) Performing minimization step: 1112. Total energy = 6143.3478 kcal/mol (6134.8158 without restraints) Performing minimization step: 1113. Total energy = 6138.8625 kcal/mol (6130.3335 without restraints) Performing minimization step: 1114. Total energy = 6134.3821 kcal/mol (6125.8560 without restraints) Performing minimization step: 1115. Total energy = 6129.9069 kcal/mol (6121.3836 without restraints) Performing minimization step: 1116. Total energy = 6125.4364 kcal/mol (6116.9159 without restraints) Performing minimization step: 1117. Total energy = 6120.9708 kcal/mol (6112.4532 without restraints) Performing minimization step: 1118. Total energy = 6116.5105 kcal/mol (6107.9961 without restraints) Performing minimization step: 1119. Total energy = 6112.0556 kcal/mol (6103.5439 without restraints) Performing minimization step: 1120. Total energy = 6107.6051 kcal/mol (6099.0962 without restraints) Performing minimization step: 1121. Total energy = 6103.1592 kcal/mol (6094.6532 without restraints) Performing minimization step: 1122. Total energy = 6098.7184 kcal/mol (6090.2153 without restraints) Performing minimization step: 1123. Total energy = 6094.2825 kcal/mol (6085.7822 without restraints) Performing minimization step: 1124. Total energy = 6089.8516 kcal/mol (6081.3542 without restraints) Performing minimization step: 1125. Total energy = 6085.4254 kcal/mol (6076.9309 without restraints) Performing minimization step: 1126. Total energy = 6081.0043 kcal/mol (6072.5127 without restraints) Performing minimization step: 1127. Total energy = 6076.5878 kcal/mol (6068.0988 without restraints) Performing minimization step: 1128. Total energy = 6072.1763 kcal/mol (6063.6905 without restraints) Performing minimization step: 1129. Total energy = 6067.7697 kcal/mol (6059.2867 without restraints) Performing minimization step: 1130. Total energy = 6063.3680 kcal/mol (6054.8878 without restraints) Performing minimization step: 1131. Total energy = 6058.9714 kcal/mol (6050.4942 without restraints) Performing minimization step: 1132. Total energy = 6054.5798 kcal/mol (6046.1056 without restraints) Performing minimization step: 1133. Total energy = 6050.1933 kcal/mol (6041.7217 without restraints) Performing minimization step: 1134. Total energy = 6045.8114 kcal/mol (6037.3427 without restraints) Performing minimization step: 1135. Total energy = 6041.4344 kcal/mol (6032.9686 without restraints) Performing minimization step: 1136. Total energy = 6037.0617 kcal/mol (6028.5986 without restraints) Performing minimization step: 1137. Total energy = 6032.6937 kcal/mol (6024.2336 without restraints) Performing minimization step: 1138. Total energy = 6028.3306 kcal/mol (6019.8733 without restraints) Performing minimization step: 1139. Total energy = 6023.9724 kcal/mol (6015.5180 without restraints) Performing minimization step: 1140. Total energy = 6019.6193 kcal/mol (6011.1678 without restraints) Performing minimization step: 1141. Total energy = 6015.2710 kcal/mol (6006.8223 without restraints) Performing minimization step: 1142. Total energy = 6010.9274 kcal/mol (6002.4816 without restraints) Performing minimization step: 1143. Total energy = 6006.5882 kcal/mol (5998.1452 without restraints) Performing minimization step: 1144. Total energy = 6002.2539 kcal/mol (5993.8138 without restraints) Performing minimization step: 1145. Total energy = 5997.9245 kcal/mol (5989.4872 without restraints) Performing minimization step: 1146. Total energy = 5993.5998 kcal/mol (5985.1653 without restraints) Performing minimization step: 1147. Total energy = 5989.2799 kcal/mol (5980.8483 without restraints) Performing minimization step: 1148. Total energy = 5984.9647 kcal/mol (5976.5359 without restraints) Performing minimization step: 1149. Total energy = 5980.6539 kcal/mol (5972.2279 without restraints) Performing minimization step: 1150. Total energy = 5976.3481 kcal/mol (5967.9249 without restraints) Performing minimization step: 1151. Total energy = 5972.0470 kcal/mol (5963.6269 without restraints) Performing minimization step: 1152. Total energy = 5967.7506 kcal/mol (5959.3332 without restraints) Performing minimization step: 1153. Total energy = 5963.4588 kcal/mol (5955.0441 without restraints) Performing minimization step: 1154. Total energy = 5959.1716 kcal/mol (5950.7600 without restraints) Performing minimization step: 1155. Total energy = 5954.8896 kcal/mol (5946.4807 without restraints) Performing minimization step: 1156. Total energy = 5950.6126 kcal/mol (5942.2066 without restraints) Performing minimization step: 1157. Total energy = 5946.3399 kcal/mol (5937.9367 without restraints) Performing minimization step: 1158. Total energy = 5942.0718 kcal/mol (5933.6715 without restraints) Performing minimization step: 1159. Total energy = 5937.8085 kcal/mol (5929.4110 without restraints) Performing minimization step: 1160. Total energy = 5933.5500 kcal/mol (5925.1554 without restraints) Performing minimization step: 1161. Total energy = 5929.2962 kcal/mol (5920.9044 without restraints) Performing minimization step: 1162. Total energy = 5925.0462 kcal/mol (5916.6571 without restraints) Performing minimization step: 1163. Total energy = 5920.8015 kcal/mol (5912.4153 without restraints) Performing minimization step: 1164. Total energy = 5916.5615 kcal/mol (5908.1781 without restraints) Performing minimization step: 1165. Total energy = 5912.3259 kcal/mol (5903.9455 without restraints) Performing minimization step: 1166. Total energy = 5908.0955 kcal/mol (5899.7177 without restraints) Performing minimization step: 1167. Total energy = 5903.8694 kcal/mol (5895.4946 without restraints) Performing minimization step: 1168. Total energy = 5899.6480 kcal/mol (5891.2760 without restraints) Performing minimization step: 1169. Total energy = 5895.4310 kcal/mol (5887.0618 without restraints) Performing minimization step: 1170. Total energy = 5891.2192 kcal/mol (5882.8528 without restraints) Performing minimization step: 1171. Total energy = 5887.0116 kcal/mol (5878.6480 without restraints) Performing minimization step: 1172. Total energy = 5882.8086 kcal/mol (5874.4478 without restraints) Performing minimization step: 1173. Total energy = 5878.6103 kcal/mol (5870.2524 without restraints) Performing minimization step: 1174. Total energy = 5874.4168 kcal/mol (5866.0617 without restraints) Performing minimization step: 1175. Total energy = 5870.2274 kcal/mol (5861.8750 without restraints) Performing minimization step: 1176. Total energy = 5866.0430 kcal/mol (5857.6935 without restraints) Performing minimization step: 1177. Total energy = 5861.8629 kcal/mol (5853.5163 without restraints) Performing minimization step: 1178. Total energy = 5857.6873 kcal/mol (5849.3434 without restraints) Performing minimization step: 1179. Total energy = 5853.5164 kcal/mol (5845.1754 without restraints) Performing minimization step: 1180. Total energy = 5849.3505 kcal/mol (5841.0123 without restraints) Performing minimization step: 1181. Total energy = 5845.1883 kcal/mol (5836.8530 without restraints) Performing minimization step: 1182. Total energy = 5841.0314 kcal/mol (5832.6988 without restraints) Performing minimization step: 1183. Total energy = 5836.8789 kcal/mol (5828.5492 without restraints) Performing minimization step: 1184. Total energy = 5832.7309 kcal/mol (5824.4040 without restraints) Performing minimization step: 1185. Total energy = 5828.5874 kcal/mol (5820.2633 without restraints) Performing minimization step: 1186. Total energy = 5824.4486 kcal/mol (5816.1275 without restraints) Performing minimization step: 1187. Total energy = 5820.3143 kcal/mol (5811.9957 without restraints) Performing minimization step: 1188. Total energy = 5816.1842 kcal/mol (5807.8685 without restraints) Performing minimization step: 1189. Total energy = 5812.0592 kcal/mol (5803.7465 without restraints) Performing minimization step: 1190. Total energy = 5807.9387 kcal/mol (5799.6287 without restraints) Performing minimization step: 1191. Total energy = 5803.8225 kcal/mol (5795.5153 without restraints) Performing minimization step: 1192. Total energy = 5799.7106 kcal/mol (5791.4061 without restraints) Performing minimization step: 1193. Total energy = 5795.6034 kcal/mol (5787.3017 without restraints) Performing minimization step: 1194. Total energy = 5791.5006 kcal/mol (5783.2017 without restraints) Performing minimization step: 1195. Total energy = 5787.4023 kcal/mol (5779.1063 without restraints) Performing minimization step: 1196. Total energy = 5783.3088 kcal/mol (5775.0156 without restraints) Performing minimization step: 1197. Total energy = 5779.2191 kcal/mol (5770.9287 without restraints) Performing minimization step: 1198. Total energy = 5775.1345 kcal/mol (5766.8469 without restraints) Performing minimization step: 1199. Total energy = 5771.0540 kcal/mol (5762.7692 without restraints) Performing minimization step: 1200. Total energy = 5766.9780 kcal/mol (5758.6960 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 5762.9066 kcal/mol (5754.6274 without restraints) Performing minimization step: 1202. Total energy = 5758.8398 kcal/mol (5750.5636 without restraints) Performing minimization step: 1203. Total energy = 5754.7778 kcal/mol (5746.5042 without restraints) Performing minimization step: 1204. Total energy = 5750.7195 kcal/mol (5742.4486 without restraints) Performing minimization step: 1205. Total energy = 5746.6659 kcal/mol (5738.3979 without restraints) Performing minimization step: 1206. Total energy = 5742.6169 kcal/mol (5734.3516 without restraints) Performing minimization step: 1207. Total energy = 5738.5722 kcal/mol (5730.3099 without restraints) Performing minimization step: 1208. Total energy = 5734.5322 kcal/mol (5726.2726 without restraints) Performing minimization step: 1209. Total energy = 5730.4967 kcal/mol (5722.2399 without restraints) Performing minimization step: 1210. Total energy = 5726.4654 kcal/mol (5718.2115 without restraints) Performing minimization step: 1211. Total energy = 5722.4389 kcal/mol (5714.1879 without restraints) Performing minimization step: 1212. Total energy = 5718.4169 kcal/mol (5710.1685 without restraints) Performing minimization step: 1213. Total energy = 5714.3989 kcal/mol (5706.1533 without restraints) Performing minimization step: 1214. Total energy = 5710.3853 kcal/mol (5702.1425 without restraints) Performing minimization step: 1215. Total energy = 5706.3763 kcal/mol (5698.1364 without restraints) Performing minimization step: 1216. Total energy = 5702.3720 kcal/mol (5694.1348 without restraints) Performing minimization step: 1217. Total energy = 5698.3720 kcal/mol (5690.1375 without restraints) Performing minimization step: 1218. Total energy = 5694.3760 kcal/mol (5686.1443 without restraints) Performing minimization step: 1219. Total energy = 5690.3842 kcal/mol (5682.1552 without restraints) Performing minimization step: 1220. Total energy = 5686.3969 kcal/mol (5678.1709 without restraints) Performing minimization step: 1221. Total energy = 5682.4142 kcal/mol (5674.1909 without restraints) Performing minimization step: 1222. Total energy = 5678.4360 kcal/mol (5670.2156 without restraints) Performing minimization step: 1223. Total energy = 5674.4620 kcal/mol (5666.2443 without restraints) Performing minimization step: 1224. Total energy = 5670.4926 kcal/mol (5662.2777 without restraints) Performing minimization step: 1225. Total energy = 5666.5273 kcal/mol (5658.3152 without restraints) Performing minimization step: 1226. Total energy = 5662.5663 kcal/mol (5654.3570 without restraints) Performing minimization step: 1227. Total energy = 5658.6099 kcal/mol (5650.4035 without restraints) Performing minimization step: 1228. Total energy = 5654.6577 kcal/mol (5646.4539 without restraints) Performing minimization step: 1229. Total energy = 5650.7101 kcal/mol (5642.5092 without restraints) Performing minimization step: 1230. Total energy = 5646.7669 kcal/mol (5638.5688 without restraints) Performing minimization step: 1231. Total energy = 5642.8281 kcal/mol (5634.6327 without restraints) Performing minimization step: 1232. Total energy = 5638.8936 kcal/mol (5630.7010 without restraints) Performing minimization step: 1233. Total energy = 5634.9630 kcal/mol (5626.7732 without restraints) Performing minimization step: 1234. Total energy = 5631.0370 kcal/mol (5622.8500 without restraints) Performing minimization step: 1235. Total energy = 5627.1147 kcal/mol (5618.9305 without restraints) Performing minimization step: 1236. Total energy = 5623.1975 kcal/mol (5615.0162 without restraints) Performing minimization step: 1237. Total energy = 5619.2843 kcal/mol (5611.1057 without restraints) Performing minimization step: 1238. Total energy = 5615.3761 kcal/mol (5607.2002 without restraints) Performing minimization step: 1239. Total energy = 5611.4717 kcal/mol (5603.2986 without restraints) Performing minimization step: 1240. Total energy = 5607.5719 kcal/mol (5599.4016 without restraints) Performing minimization step: 1241. Total energy = 5603.6764 kcal/mol (5595.5090 without restraints) Performing minimization step: 1242. Total energy = 5599.7851 kcal/mol (5591.6205 without restraints) Performing minimization step: 1243. Total energy = 5595.8979 kcal/mol (5587.7360 without restraints) Performing minimization step: 1244. Total energy = 5592.0154 kcal/mol (5583.8562 without restraints) Performing minimization step: 1245. Total energy = 5588.1370 kcal/mol (5579.9806 without restraints) Performing minimization step: 1246. Total energy = 5584.2628 kcal/mol (5576.1092 without restraints) Performing minimization step: 1247. Total energy = 5580.3927 kcal/mol (5572.2419 without restraints) Performing minimization step: 1248. Total energy = 5576.5270 kcal/mol (5568.3790 without restraints) Performing minimization step: 1249. Total energy = 5572.6657 kcal/mol (5564.5204 without restraints) Performing minimization step: 1250. Total energy = 5568.8086 kcal/mol (5560.6661 without restraints) Performing minimization step: 1251. Total energy = 5564.9560 kcal/mol (5556.8163 without restraints) Performing minimization step: 1252. Total energy = 5561.1075 kcal/mol (5552.9705 without restraints) Performing minimization step: 1253. Total energy = 5557.2632 kcal/mol (5549.1290 without restraints) Performing minimization step: 1254. Total energy = 5553.4233 kcal/mol (5545.2920 without restraints) Performing minimization step: 1255. Total energy = 5549.5871 kcal/mol (5541.4584 without restraints) Performing minimization step: 1256. Total energy = 5545.7558 kcal/mol (5537.6300 without restraints) Performing minimization step: 1257. Total energy = 5541.9289 kcal/mol (5533.8058 without restraints) Performing minimization step: 1258. Total energy = 5538.1060 kcal/mol (5529.9857 without restraints) Performing minimization step: 1259. Total energy = 5534.2874 kcal/mol (5526.1699 without restraints) Performing minimization step: 1260. Total energy = 5530.4732 kcal/mol (5522.3584 without restraints) Performing minimization step: 1261. Total energy = 5526.6633 kcal/mol (5518.5513 without restraints) Performing minimization step: 1262. Total energy = 5522.8573 kcal/mol (5514.7479 without restraints) Performing minimization step: 1263. Total energy = 5519.0554 kcal/mol (5510.9488 without restraints) Performing minimization step: 1264. Total energy = 5515.2575 kcal/mol (5507.1538 without restraints) Performing minimization step: 1265. Total energy = 5511.4644 kcal/mol (5503.3635 without restraints) Performing minimization step: 1266. Total energy = 5507.6756 kcal/mol (5499.5775 without restraints) Performing minimization step: 1267. Total energy = 5503.8912 kcal/mol (5495.7959 without restraints) Performing minimization step: 1268. Total energy = 5500.1109 kcal/mol (5492.0183 without restraints) Performing minimization step: 1269. Total energy = 5496.3345 kcal/mol (5488.2447 without restraints) Performing minimization step: 1270. Total energy = 5492.5625 kcal/mol (5484.4752 without restraints) Performing minimization step: 1271. Total energy = 5488.7943 kcal/mol (5480.7097 without restraints) Performing minimization step: 1272. Total energy = 5485.0307 kcal/mol (5476.9493 without restraints) Performing minimization step: 1273. Total energy = 5481.2719 kcal/mol (5473.1932 without restraints) Performing minimization step: 1274. Total energy = 5477.5174 kcal/mol (5469.4415 without restraints) Performing minimization step: 1275. Total energy = 5473.7662 kcal/mol (5465.6931 without restraints) Performing minimization step: 1276. Total energy = 5470.0196 kcal/mol (5461.9493 without restraints) Performing minimization step: 1277. Total energy = 5466.2773 kcal/mol (5458.2096 without restraints) Performing minimization step: 1278. Total energy = 5462.5391 kcal/mol (5454.4743 without restraints) Performing minimization step: 1279. Total energy = 5458.8047 kcal/mol (5450.7425 without restraints) Performing minimization step: 1280. Total energy = 5455.0749 kcal/mol (5447.0156 without restraints) Performing minimization step: 1281. Total energy = 5451.3494 kcal/mol (5443.2930 without restraints) Performing minimization step: 1282. Total energy = 5447.6282 kcal/mol (5439.5744 without restraints) Performing minimization step: 1283. Total energy = 5443.9110 kcal/mol (5435.8601 without restraints) Performing minimization step: 1284. Total energy = 5440.1980 kcal/mol (5432.1497 without restraints) Performing minimization step: 1285. Total energy = 5436.4893 kcal/mol (5428.4439 without restraints) Performing minimization step: 1286. Total energy = 5432.7847 kcal/mol (5424.7421 without restraints) Performing minimization step: 1287. Total energy = 5429.0844 kcal/mol (5421.0445 without restraints) Performing minimization step: 1288. Total energy = 5425.3882 kcal/mol (5417.3511 without restraints) Performing minimization step: 1289. Total energy = 5421.6963 kcal/mol (5413.6619 without restraints) Performing minimization step: 1290. Total energy = 5418.0084 kcal/mol (5409.9768 without restraints) Performing minimization step: 1291. Total energy = 5414.3248 kcal/mol (5406.2960 without restraints) Performing minimization step: 1292. Total energy = 5410.6454 kcal/mol (5402.6193 without restraints) Performing minimization step: 1293. Total energy = 5406.9701 kcal/mol (5398.9468 without restraints) Performing minimization step: 1294. Total energy = 5403.2986 kcal/mol (5395.2781 without restraints) Performing minimization step: 1295. Total energy = 5399.6315 kcal/mol (5391.6137 without restraints) Performing minimization step: 1296. Total energy = 5395.9687 kcal/mol (5387.9537 without restraints) Performing minimization step: 1297. Total energy = 5392.3099 kcal/mol (5384.2977 without restraints) Performing minimization step: 1298. Total energy = 5388.6556 kcal/mol (5380.6462 without restraints) Performing minimization step: 1299. Total energy = 5385.0052 kcal/mol (5376.9985 without restraints) Performing minimization step: 1300. Total energy = 5381.3590 kcal/mol (5373.3550 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 5377.7172 kcal/mol (5369.7161 without restraints) Performing minimization step: 1302. Total energy = 5374.0796 kcal/mol (5366.0813 without restraints) Performing minimization step: 1303. Total energy = 5370.4460 kcal/mol (5362.4504 without restraints) Performing minimization step: 1304. Total energy = 5366.8163 kcal/mol (5358.8233 without restraints) Performing minimization step: 1305. Total energy = 5363.1909 kcal/mol (5355.2007 without restraints) Performing minimization step: 1306. Total energy = 5359.5696 kcal/mol (5351.5822 without restraints) Performing minimization step: 1307. Total energy = 5355.9524 kcal/mol (5347.9679 without restraints) Performing minimization step: 1308. Total energy = 5352.3395 kcal/mol (5344.3578 without restraints) Performing minimization step: 1309. Total energy = 5348.7308 kcal/mol (5340.7518 without restraints) Performing minimization step: 1310. Total energy = 5345.1264 kcal/mol (5337.1501 without restraints) Performing minimization step: 1311. Total energy = 5341.5259 kcal/mol (5333.5524 without restraints) Performing minimization step: 1312. Total energy = 5337.9298 kcal/mol (5329.9590 without restraints) Performing minimization step: 1313. Total energy = 5334.3377 kcal/mol (5326.3699 without restraints) Performing minimization step: 1314. Total energy = 5330.7498 kcal/mol (5322.7845 without restraints) Performing minimization step: 1315. Total energy = 5327.1657 kcal/mol (5319.2033 without restraints) Performing minimization step: 1316. Total energy = 5323.5863 kcal/mol (5315.6267 without restraints) Performing minimization step: 1317. Total energy = 5320.0108 kcal/mol (5312.0539 without restraints) Performing minimization step: 1318. Total energy = 5316.4392 kcal/mol (5308.4851 without restraints) Performing minimization step: 1319. Total energy = 5312.8713 kcal/mol (5304.9200 without restraints) Performing minimization step: 1320. Total energy = 5309.3073 kcal/mol (5301.3587 without restraints) Performing minimization step: 1321. Total energy = 5305.7481 kcal/mol (5297.8024 without restraints) Performing minimization step: 1322. Total energy = 5302.1934 kcal/mol (5294.2503 without restraints) Performing minimization step: 1323. Total energy = 5298.6424 kcal/mol (5290.7022 without restraints) Performing minimization step: 1324. Total energy = 5295.0956 kcal/mol (5287.1581 without restraints) Performing minimization step: 1325. Total energy = 5291.5528 kcal/mol (5283.6181 without restraints) Performing minimization step: 1326. Total energy = 5288.0145 kcal/mol (5280.0826 without restraints) Performing minimization step: 1327. Total energy = 5284.4800 kcal/mol (5276.5508 without restraints) Performing minimization step: 1328. Total energy = 5280.9496 kcal/mol (5273.0231 without restraints) Performing minimization step: 1329. Total energy = 5277.4231 kcal/mol (5269.4994 without restraints) Performing minimization step: 1330. Total energy = 5273.9011 kcal/mol (5265.9802 without restraints) Performing minimization step: 1331. Total energy = 5270.3829 kcal/mol (5262.4648 without restraints) Performing minimization step: 1332. Total energy = 5266.8689 kcal/mol (5258.9536 without restraints) Performing minimization step: 1333. Total energy = 5263.3590 kcal/mol (5255.4464 without restraints) Performing minimization step: 1334. Total energy = 5259.8542 kcal/mol (5251.9444 without restraints) Performing minimization step: 1335. Total energy = 5256.3526 kcal/mol (5248.4455 without restraints) Performing minimization step: 1336. Total energy = 5252.8550 kcal/mol (5244.9507 without restraints) Performing minimization step: 1337. Total energy = 5249.3616 kcal/mol (5241.4601 without restraints) Performing minimization step: 1338. Total energy = 5245.8723 kcal/mol (5237.9735 without restraints) Performing minimization step: 1339. Total energy = 5242.3870 kcal/mol (5234.4910 without restraints) Performing minimization step: 1340. Total energy = 5238.9058 kcal/mol (5231.0125 without restraints) Performing minimization step: 1341. Total energy = 5235.4287 kcal/mol (5227.5382 without restraints) Performing minimization step: 1342. Total energy = 5231.9557 kcal/mol (5224.0680 without restraints) Performing minimization step: 1343. Total energy = 5228.4869 kcal/mol (5220.6020 without restraints) Performing minimization step: 1344. Total energy = 5225.0221 kcal/mol (5217.1399 without restraints) Performing minimization step: 1345. Total energy = 5221.5611 kcal/mol (5213.6817 without restraints) Performing minimization step: 1346. Total energy = 5218.1044 kcal/mol (5210.2277 without restraints) Performing minimization step: 1347. Total energy = 5214.6516 kcal/mol (5206.7777 without restraints) Performing minimization step: 1348. Total energy = 5211.2029 kcal/mol (5203.3318 without restraints) Performing minimization step: 1349. Total energy = 5207.7583 kcal/mol (5199.8900 without restraints) Performing minimization step: 1350. Total energy = 5204.3180 kcal/mol (5196.4525 without restraints) Performing minimization step: 1351. Total energy = 5200.8817 kcal/mol (5193.0189 without restraints) Performing minimization step: 1352. Total energy = 5197.4493 kcal/mol (5189.5893 without restraints) Performing minimization step: 1353. Total energy = 5194.0213 kcal/mol (5186.1641 without restraints) Performing minimization step: 1354. Total energy = 5190.5973 kcal/mol (5182.7428 without restraints) Performing minimization step: 1355. Total energy = 5187.1773 kcal/mol (5179.3256 without restraints) Performing minimization step: 1356. Total energy = 5183.7614 kcal/mol (5175.9124 without restraints) Performing minimization step: 1357. Total energy = 5180.3496 kcal/mol (5172.5035 without restraints) Performing minimization step: 1358. Total energy = 5176.9419 kcal/mol (5169.0985 without restraints) Performing minimization step: 1359. Total energy = 5173.5381 kcal/mol (5165.6974 without restraints) Performing minimization step: 1360. Total energy = 5170.1385 kcal/mol (5162.3006 without restraints) Performing minimization step: 1361. Total energy = 5166.7431 kcal/mol (5158.9078 without restraints) Performing minimization step: 1362. Total energy = 5163.3512 kcal/mol (5155.5189 without restraints) Performing minimization step: 1363. Total energy = 5159.9635 kcal/mol (5152.1340 without restraints) Performing minimization step: 1364. Total energy = 5156.5801 kcal/mol (5148.7533 without restraints) Performing minimization step: 1365. Total energy = 5153.2007 kcal/mol (5145.3767 without restraints) Performing minimization step: 1366. Total energy = 5149.8253 kcal/mol (5142.0041 without restraints) Performing minimization step: 1367. Total energy = 5146.4540 kcal/mol (5138.6354 without restraints) Performing minimization step: 1368. Total energy = 5143.0866 kcal/mol (5135.2709 without restraints) Performing minimization step: 1369. Total energy = 5139.7237 kcal/mol (5131.9107 without restraints) Performing minimization step: 1370. Total energy = 5136.3645 kcal/mol (5128.5543 without restraints) Performing minimization step: 1371. Total energy = 5133.0094 kcal/mol (5125.2019 without restraints) Performing minimization step: 1372. Total energy = 5129.6584 kcal/mol (5121.8538 without restraints) Performing minimization step: 1373. Total energy = 5126.3112 kcal/mol (5118.5093 without restraints) Performing minimization step: 1374. Total energy = 5122.9682 kcal/mol (5115.1691 without restraints) Performing minimization step: 1375. Total energy = 5119.6290 kcal/mol (5111.8327 without restraints) Performing minimization step: 1376. Total energy = 5116.2943 kcal/mol (5108.5007 without restraints) Performing minimization step: 1377. Total energy = 5112.9634 kcal/mol (5105.1726 without restraints) Performing minimization step: 1378. Total energy = 5109.6365 kcal/mol (5101.8486 without restraints) Performing minimization step: 1379. Total energy = 5106.3139 kcal/mol (5098.5285 without restraints) Performing minimization step: 1380. Total energy = 5102.9951 kcal/mol (5095.2127 without restraints) Performing minimization step: 1381. Total energy = 5099.6804 kcal/mol (5091.9007 without restraints) Performing minimization step: 1382. Total energy = 5096.3697 kcal/mol (5088.5928 without restraints) Performing minimization step: 1383. Total energy = 5093.0632 kcal/mol (5085.2891 without restraints) Performing minimization step: 1384. Total energy = 5089.7610 kcal/mol (5081.9896 without restraints) Performing minimization step: 1385. Total energy = 5086.4629 kcal/mol (5078.6944 without restraints) Performing minimization step: 1386. Total energy = 5083.1683 kcal/mol (5075.4025 without restraints) Performing minimization step: 1387. Total energy = 5079.8777 kcal/mol (5072.1147 without restraints) Performing minimization step: 1388. Total energy = 5076.5913 kcal/mol (5068.8310 without restraints) Performing minimization step: 1389. Total energy = 5073.3088 kcal/mol (5065.5512 without restraints) Performing minimization step: 1390. Total energy = 5070.0303 kcal/mol (5062.2755 without restraints) Performing minimization step: 1391. Total energy = 5066.7556 kcal/mol (5059.0037 without restraints) Performing minimization step: 1392. Total energy = 5063.4850 kcal/mol (5055.7357 without restraints) Performing minimization step: 1393. Total energy = 5060.2187 kcal/mol (5052.4722 without restraints) Performing minimization step: 1394. Total energy = 5056.9563 kcal/mol (5049.2126 without restraints) Performing minimization step: 1395. Total energy = 5053.6979 kcal/mol (5045.9570 without restraints) Performing minimization step: 1396. Total energy = 5050.4437 kcal/mol (5042.7057 without restraints) Performing minimization step: 1397. Total energy = 5047.1932 kcal/mol (5039.4578 without restraints) Performing minimization step: 1398. Total energy = 5043.9467 kcal/mol (5036.2141 without restraints) Performing minimization step: 1399. Total energy = 5040.7044 kcal/mol (5032.9747 without restraints) Performing minimization step: 1400. Total energy = 5037.4662 kcal/mol (5029.7391 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 5034.2315 kcal/mol (5026.5072 without restraints) Performing minimization step: 1402. Total energy = 5031.0010 kcal/mol (5023.2795 without restraints) Performing minimization step: 1403. Total energy = 5027.7744 kcal/mol (5020.0558 without restraints) Performing minimization step: 1404. Total energy = 5024.5519 kcal/mol (5016.8359 without restraints) Performing minimization step: 1405. Total energy = 5021.3335 kcal/mol (5013.6203 without restraints) Performing minimization step: 1406. Total energy = 5018.1189 kcal/mol (5010.4085 without restraints) Performing minimization step: 1407. Total energy = 5014.9081 kcal/mol (5007.2004 without restraints) Performing minimization step: 1408. Total energy = 5011.7015 kcal/mol (5003.9968 without restraints) Performing minimization step: 1409. Total energy = 5008.4993 kcal/mol (5000.7974 without restraints) Performing minimization step: 1410. Total energy = 5005.3010 kcal/mol (4997.6019 without restraints) Performing minimization step: 1411. Total energy = 5002.1065 kcal/mol (4994.4100 without restraints) Performing minimization step: 1412. Total energy = 4998.9158 kcal/mol (4991.2220 without restraints) Performing minimization step: 1413. Total energy = 4995.7292 kcal/mol (4988.0382 without restraints) Performing minimization step: 1414. Total energy = 4992.5469 kcal/mol (4984.8587 without restraints) Performing minimization step: 1415. Total energy = 4989.3678 kcal/mol (4981.6824 without restraints) Performing minimization step: 1416. Total energy = 4986.1933 kcal/mol (4978.5107 without restraints) Performing minimization step: 1417. Total energy = 4983.0227 kcal/mol (4975.3428 without restraints) Performing minimization step: 1418. Total energy = 4979.8562 kcal/mol (4972.1790 without restraints) Performing minimization step: 1419. Total energy = 4976.6933 kcal/mol (4969.0190 without restraints) Performing minimization step: 1420. Total energy = 4973.5342 kcal/mol (4965.8627 without restraints) Performing minimization step: 1421. Total energy = 4970.3797 kcal/mol (4962.7110 without restraints) Performing minimization step: 1422. Total energy = 4967.2288 kcal/mol (4959.5629 without restraints) Performing minimization step: 1423. Total energy = 4964.0819 kcal/mol (4956.4188 without restraints) Performing minimization step: 1424. Total energy = 4960.9391 kcal/mol (4953.2787 without restraints) Performing minimization step: 1425. Total energy = 4957.8004 kcal/mol (4950.1428 without restraints) Performing minimization step: 1426. Total energy = 4954.6658 kcal/mol (4947.0110 without restraints) Performing minimization step: 1427. Total energy = 4951.5350 kcal/mol (4943.8829 without restraints) Performing minimization step: 1428. Total energy = 4948.4080 kcal/mol (4940.7587 without restraints) Performing minimization step: 1429. Total energy = 4945.2851 kcal/mol (4937.6387 without restraints) Performing minimization step: 1430. Total energy = 4942.1662 kcal/mol (4934.5225 without restraints) Performing minimization step: 1431. Total energy = 4939.0511 kcal/mol (4931.4101 without restraints) Performing minimization step: 1432. Total energy = 4935.9397 kcal/mol (4928.3016 without restraints) Performing minimization step: 1433. Total energy = 4932.8326 kcal/mol (4925.1972 without restraints) Performing minimization step: 1434. Total energy = 4929.7294 kcal/mol (4922.0968 without restraints) Performing minimization step: 1435. Total energy = 4926.6303 kcal/mol (4919.0005 without restraints) Performing minimization step: 1436. Total energy = 4923.5350 kcal/mol (4915.9080 without restraints) Performing minimization step: 1437. Total energy = 4920.4436 kcal/mol (4912.8193 without restraints) Performing minimization step: 1438. Total energy = 4917.3562 kcal/mol (4909.7347 without restraints) Performing minimization step: 1439. Total energy = 4914.2727 kcal/mol (4906.6540 without restraints) Performing minimization step: 1440. Total energy = 4911.1932 kcal/mol (4903.5773 without restraints) Performing minimization step: 1441. Total energy = 4908.1176 kcal/mol (4900.5045 without restraints) Performing minimization step: 1442. Total energy = 4905.0461 kcal/mol (4897.4357 without restraints) Performing minimization step: 1443. Total energy = 4901.9785 kcal/mol (4894.3710 without restraints) Performing minimization step: 1444. Total energy = 4898.9147 kcal/mol (4891.3100 without restraints) Performing minimization step: 1445. Total energy = 4895.8549 kcal/mol (4888.2529 without restraints) Performing minimization step: 1446. Total energy = 4892.7995 kcal/mol (4885.2004 without restraints) Performing minimization step: 1447. Total energy = 4889.7475 kcal/mol (4882.1511 without restraints) Performing minimization step: 1448. Total energy = 4886.6995 kcal/mol (4879.1058 without restraints) Performing minimization step: 1449. Total energy = 4883.6548 kcal/mol (4876.0640 without restraints) Performing minimization step: 1450. Total energy = 4880.6148 kcal/mol (4873.0267 without restraints) Performing minimization step: 1451. Total energy = 4877.5787 kcal/mol (4869.9934 without restraints) Performing minimization step: 1452. Total energy = 4874.5465 kcal/mol (4866.9640 without restraints) Performing minimization step: 1453. Total energy = 4871.5182 kcal/mol (4863.9385 without restraints) Performing minimization step: 1454. Total energy = 4868.4935 kcal/mol (4860.9165 without restraints) Performing minimization step: 1455. Total energy = 4865.4728 kcal/mol (4857.8986 without restraints) Performing minimization step: 1456. Total energy = 4862.4563 kcal/mol (4854.8849 without restraints) Performing minimization step: 1457. Total energy = 4859.4434 kcal/mol (4851.8748 without restraints) Performing minimization step: 1458. Total energy = 4856.4344 kcal/mol (4848.8686 without restraints) Performing minimization step: 1459. Total energy = 4853.4294 kcal/mol (4845.8664 without restraints) Performing minimization step: 1460. Total energy = 4850.4280 kcal/mol (4842.8678 without restraints) Performing minimization step: 1461. Total energy = 4847.4315 kcal/mol (4839.8740 without restraints) Performing minimization step: 1462. Total energy = 4844.4382 kcal/mol (4836.8838 without restraints) Performing minimization step: 1463. Total energy = 4841.4489 kcal/mol (4833.8970 without restraints) Performing minimization step: 1464. Total energy = 4838.4634 kcal/mol (4830.9143 without restraints) Performing minimization step: 1465. Total energy = 4835.4817 kcal/mol (4827.9354 without restraints) Performing minimization step: 1466. Total energy = 4832.5040 kcal/mol (4824.9604 without restraints) Performing minimization step: 1467. Total energy = 4829.5303 kcal/mol (4821.9896 without restraints) Performing minimization step: 1468. Total energy = 4826.5604 kcal/mol (4819.0224 without restraints) Performing minimization step: 1469. Total energy = 4823.5948 kcal/mol (4816.0597 without restraints) Performing minimization step: 1470. Total energy = 4820.6326 kcal/mol (4813.1002 without restraints) Performing minimization step: 1471. Total energy = 4817.6743 kcal/mol (4810.1447 without restraints) Performing minimization step: 1472. Total energy = 4814.7198 kcal/mol (4807.1931 without restraints) Performing minimization step: 1473. Total energy = 4811.7692 kcal/mol (4804.2452 without restraints) Performing minimization step: 1474. Total energy = 4808.8224 kcal/mol (4801.3013 without restraints) Performing minimization step: 1475. Total energy = 4805.8795 kcal/mol (4798.3611 without restraints) Performing minimization step: 1476. Total energy = 4802.9405 kcal/mol (4795.4249 without restraints) Performing minimization step: 1477. Total energy = 4800.0053 kcal/mol (4792.4923 without restraints) Performing minimization step: 1478. Total energy = 4797.0737 kcal/mol (4789.5636 without restraints) Performing minimization step: 1479. Total energy = 4794.1462 kcal/mol (4786.6390 without restraints) Performing minimization step: 1480. Total energy = 4791.2225 kcal/mol (4783.7181 without restraints) Performing minimization step: 1481. Total energy = 4788.3032 kcal/mol (4780.8017 without restraints) Performing minimization step: 1482. Total energy = 4785.3878 kcal/mol (4777.8889 without restraints) Performing minimization step: 1483. Total energy = 4782.4758 kcal/mol (4774.9797 without restraints) Performing minimization step: 1484. Total energy = 4779.5678 kcal/mol (4772.0745 without restraints) Performing minimization step: 1485. Total energy = 4776.6635 kcal/mol (4769.1730 without restraints) Performing minimization step: 1486. Total energy = 4773.7631 kcal/mol (4766.2754 without restraints) Performing minimization step: 1487. Total energy = 4770.8665 kcal/mol (4763.3816 without restraints) Performing minimization step: 1488. Total energy = 4767.9737 kcal/mol (4760.4916 without restraints) Performing minimization step: 1489. Total energy = 4765.0855 kcal/mol (4757.6061 without restraints) Performing minimization step: 1490. Total energy = 4762.2002 kcal/mol (4754.7236 without restraints) Performing minimization step: 1491. Total energy = 4759.3190 kcal/mol (4751.8450 without restraints) Performing minimization step: 1492. Total energy = 4756.4418 kcal/mol (4748.9708 without restraints) Performing minimization step: 1493. Total energy = 4753.5683 kcal/mol (4746.1003 without restraints) Performing minimization step: 1494. Total energy = 4750.6986 kcal/mol (4743.2333 without restraints) Performing minimization step: 1495. Total energy = 4747.8329 kcal/mol (4740.3703 without restraints) Performing minimization step: 1496. Total energy = 4744.9708 kcal/mol (4737.5110 without restraints) Performing minimization step: 1497. Total energy = 4742.1129 kcal/mol (4734.6560 without restraints) Performing minimization step: 1498. Total energy = 4739.2587 kcal/mol (4731.8044 without restraints) Performing minimization step: 1499. Total energy = 4736.4078 kcal/mol (4728.9563 without restraints) Performing minimization step: 1500. Total energy = 4733.5614 kcal/mol (4726.1127 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 4730.7186 kcal/mol (4723.2728 without restraints) Performing minimization step: 1502. Total energy = 4727.8798 kcal/mol (4720.4368 without restraints) Performing minimization step: 1503. Total energy = 4725.0443 kcal/mol (4717.6041 without restraints) Performing minimization step: 1504. Total energy = 4722.2127 kcal/mol (4714.7751 without restraints) Performing minimization step: 1505. Total energy = 4719.3849 kcal/mol (4711.9504 without restraints) Performing minimization step: 1506. Total energy = 4716.5610 kcal/mol (4709.1293 without restraints) Performing minimization step: 1507. Total energy = 4713.7407 kcal/mol (4706.3115 without restraints) Performing minimization step: 1508. Total energy = 4710.9246 kcal/mol (4703.4983 without restraints) Performing minimization step: 1509. Total energy = 4708.1123 kcal/mol (4700.6888 without restraints) Performing minimization step: 1510. Total energy = 4705.3035 kcal/mol (4697.8829 without restraints) Performing minimization step: 1511. Total energy = 4702.4986 kcal/mol (4695.0807 without restraints) Performing minimization step: 1512. Total energy = 4699.6972 kcal/mol (4692.2821 without restraints) Performing minimization step: 1513. Total energy = 4696.8998 kcal/mol (4689.4875 without restraints) Performing minimization step: 1514. Total energy = 4694.1062 kcal/mol (4686.6967 without restraints) Performing minimization step: 1515. Total energy = 4691.3171 kcal/mol (4683.9104 without restraints) Performing minimization step: 1516. Total energy = 4688.5310 kcal/mol (4681.1271 without restraints) Performing minimization step: 1517. Total energy = 4685.7491 kcal/mol (4678.3480 without restraints) Performing minimization step: 1518. Total energy = 4682.9705 kcal/mol (4675.5723 without restraints) Performing minimization step: 1519. Total energy = 4680.1954 kcal/mol (4672.7999 without restraints) Performing minimization step: 1520. Total energy = 4677.4243 kcal/mol (4670.0316 without restraints) Performing minimization step: 1521. Total energy = 4674.6572 kcal/mol (4667.2673 without restraints) Performing minimization step: 1522. Total energy = 4671.8938 kcal/mol (4664.5067 without restraints) Performing minimization step: 1523. Total energy = 4669.1341 kcal/mol (4661.7498 without restraints) Performing minimization step: 1524. Total energy = 4666.3782 kcal/mol (4658.9967 without restraints) Performing minimization step: 1525. Total energy = 4663.6262 kcal/mol (4656.2475 without restraints) Performing minimization step: 1526. Total energy = 4660.8780 kcal/mol (4653.5021 without restraints) Performing minimization step: 1527. Total energy = 4658.1334 kcal/mol (4650.7604 without restraints) Performing minimization step: 1528. Total energy = 4655.3926 kcal/mol (4648.0222 without restraints) Performing minimization step: 1529. Total energy = 4652.6556 kcal/mol (4645.2883 without restraints) Performing minimization step: 1530. Total energy = 4649.9227 kcal/mol (4642.5580 without restraints) Performing minimization step: 1531. Total energy = 4647.1932 kcal/mol (4639.8312 without restraints) Performing minimization step: 1532. Total energy = 4644.4671 kcal/mol (4637.1080 without restraints) Performing minimization step: 1533. Total energy = 4641.7448 kcal/mol (4634.3885 without restraints) Performing minimization step: 1534. Total energy = 4639.0262 kcal/mol (4631.6727 without restraints) Performing minimization step: 1535. Total energy = 4636.3119 kcal/mol (4628.9612 without restraints) Performing minimization step: 1536. Total energy = 4633.6006 kcal/mol (4626.2527 without restraints) Performing minimization step: 1537. Total energy = 4630.8933 kcal/mol (4623.5481 without restraints) Performing minimization step: 1538. Total energy = 4628.1894 kcal/mol (4620.8471 without restraints) Performing minimization step: 1539. Total energy = 4625.4895 kcal/mol (4618.1500 without restraints) Performing minimization step: 1540. Total energy = 4622.7931 kcal/mol (4615.4564 without restraints) Performing minimization step: 1541. Total energy = 4620.1006 kcal/mol (4612.7667 without restraints) Performing minimization step: 1542. Total energy = 4617.4120 kcal/mol (4610.0807 without restraints) Performing minimization step: 1543. Total energy = 4614.7265 kcal/mol (4607.3982 without restraints) Performing minimization step: 1544. Total energy = 4612.0452 kcal/mol (4604.7197 without restraints) Performing minimization step: 1545. Total energy = 4609.3674 kcal/mol (4602.0447 without restraints) Performing minimization step: 1546. Total energy = 4606.6936 kcal/mol (4599.3738 without restraints) Performing minimization step: 1547. Total energy = 4604.0237 kcal/mol (4596.7068 without restraints) Performing minimization step: 1548. Total energy = 4601.3571 kcal/mol (4594.0428 without restraints) Performing minimization step: 1549. Total energy = 4598.6942 kcal/mol (4591.3828 without restraints) Performing minimization step: 1550. Total energy = 4596.0359 kcal/mol (4588.7272 without restraints) Performing minimization step: 1551. Total energy = 4593.3803 kcal/mol (4586.0744 without restraints) Performing minimization step: 1552. Total energy = 4590.7284 kcal/mol (4583.4254 without restraints) Performing minimization step: 1553. Total energy = 4588.0802 kcal/mol (4580.7798 without restraints) Performing minimization step: 1554. Total energy = 4585.4356 kcal/mol (4578.1381 without restraints) Performing minimization step: 1555. Total energy = 4582.7949 kcal/mol (4575.5002 without restraints) Performing minimization step: 1556. Total energy = 4580.1578 kcal/mol (4572.8660 without restraints) Performing minimization step: 1557. Total energy = 4577.5248 kcal/mol (4570.2359 without restraints) Performing minimization step: 1558. Total energy = 4574.8953 kcal/mol (4567.6090 without restraints) Performing minimization step: 1559. Total energy = 4572.2694 kcal/mol (4564.9859 without restraints) Performing minimization step: 1560. Total energy = 4569.6466 kcal/mol (4562.3660 without restraints) Performing minimization step: 1561. Total energy = 4567.0274 kcal/mol (4559.7495 without restraints) Performing minimization step: 1562. Total energy = 4564.4122 kcal/mol (4557.1372 without restraints) Performing minimization step: 1563. Total energy = 4561.8007 kcal/mol (4554.5284 without restraints) Performing minimization step: 1564. Total energy = 4559.1927 kcal/mol (4551.9233 without restraints) Performing minimization step: 1565. Total energy = 4556.5883 kcal/mol (4549.3216 without restraints) Performing minimization step: 1566. Total energy = 4553.9872 kcal/mol (4546.7234 without restraints) Performing minimization step: 1567. Total energy = 4551.3901 kcal/mol (4544.1292 without restraints) Performing minimization step: 1568. Total energy = 4548.7970 kcal/mol (4541.5388 without restraints) Performing minimization step: 1569. Total energy = 4546.2073 kcal/mol (4538.9520 without restraints) Performing minimization step: 1570. Total energy = 4543.6213 kcal/mol (4536.3688 without restraints) Performing minimization step: 1571. Total energy = 4541.0391 kcal/mol (4533.7892 without restraints) Performing minimization step: 1572. Total energy = 4538.4607 kcal/mol (4531.2138 without restraints) Performing minimization step: 1573. Total energy = 4535.8853 kcal/mol (4528.6412 without restraints) Performing minimization step: 1574. Total energy = 4533.3140 kcal/mol (4526.0727 without restraints) Performing minimization step: 1575. Total energy = 4530.7463 kcal/mol (4523.5078 without restraints) Performing minimization step: 1576. Total energy = 4528.1820 kcal/mol (4520.9463 without restraints) Performing minimization step: 1577. Total energy = 4525.6216 kcal/mol (4518.3888 without restraints) Performing minimization step: 1578. Total energy = 4523.0650 kcal/mol (4515.8349 without restraints) Performing minimization step: 1579. Total energy = 4520.5117 kcal/mol (4513.2844 without restraints) Performing minimization step: 1580. Total energy = 4517.9621 kcal/mol (4510.7377 without restraints) Performing minimization step: 1581. Total energy = 4515.4159 kcal/mol (4508.1942 without restraints) Performing minimization step: 1582. Total energy = 4512.8732 kcal/mol (4505.6543 without restraints) Performing minimization step: 1583. Total energy = 4510.3339 kcal/mol (4503.1179 without restraints) Performing minimization step: 1584. Total energy = 4507.7990 kcal/mol (4500.5858 without restraints) Performing minimization step: 1585. Total energy = 4505.2670 kcal/mol (4498.0566 without restraints) Performing minimization step: 1586. Total energy = 4502.7385 kcal/mol (4495.5308 without restraints) Performing minimization step: 1587. Total energy = 4500.2137 kcal/mol (4493.0089 without restraints) Performing minimization step: 1588. Total energy = 4497.6926 kcal/mol (4490.4906 without restraints) Performing minimization step: 1589. Total energy = 4495.1754 kcal/mol (4487.9763 without restraints) Performing minimization step: 1590. Total energy = 4492.6617 kcal/mol (4485.4653 without restraints) Performing minimization step: 1591. Total energy = 4490.1516 kcal/mol (4482.9579 without restraints) Performing minimization step: 1592. Total energy = 4487.6446 kcal/mol (4480.4539 without restraints) Performing minimization step: 1593. Total energy = 4485.1411 kcal/mol (4477.9532 without restraints) Performing minimization step: 1594. Total energy = 4482.6414 kcal/mol (4475.4563 without restraints) Performing minimization step: 1595. Total energy = 4480.1452 kcal/mol (4472.9629 without restraints) Performing minimization step: 1596. Total energy = 4477.6530 kcal/mol (4470.4735 without restraints) Performing minimization step: 1597. Total energy = 4475.1636 kcal/mol (4467.9870 without restraints) Performing minimization step: 1598. Total energy = 4472.6786 kcal/mol (4465.5047 without restraints) Performing minimization step: 1599. Total energy = 4470.1964 kcal/mol (4463.0253 without restraints) Performing minimization step: 1600. Total energy = 4467.7179 kcal/mol (4460.5496 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 4465.2430 kcal/mol (4458.0776 without restraints) Performing minimization step: 1602. Total energy = 4462.7717 kcal/mol (4455.6090 without restraints) Performing minimization step: 1603. Total energy = 4460.3038 kcal/mol (4453.1439 without restraints) Performing minimization step: 1604. Total energy = 4457.8394 kcal/mol (4450.6824 without restraints) Performing minimization step: 1605. Total energy = 4455.3787 kcal/mol (4448.2245 without restraints) Performing minimization step: 1606. Total energy = 4452.9211 kcal/mol (4445.7699 without restraints) Performing minimization step: 1607. Total energy = 4450.4675 kcal/mol (4443.3189 without restraints) Performing minimization step: 1608. Total energy = 4448.0173 kcal/mol (4440.8716 without restraints) Performing minimization step: 1609. Total energy = 4445.5705 kcal/mol (4438.4275 without restraints) Performing minimization step: 1610. Total energy = 4443.1275 kcal/mol (4435.9874 without restraints) Performing minimization step: 1611. Total energy = 4440.6878 kcal/mol (4433.5505 without restraints) Performing minimization step: 1612. Total energy = 4438.2514 kcal/mol (4431.1170 without restraints) Performing minimization step: 1613. Total energy = 4435.8189 kcal/mol (4428.6873 without restraints) Performing minimization step: 1614. Total energy = 4433.3895 kcal/mol (4426.2607 without restraints) Performing minimization step: 1615. Total energy = 4430.9640 kcal/mol (4423.8380 without restraints) Performing minimization step: 1616. Total energy = 4428.5419 kcal/mol (4421.4186 without restraints) Performing minimization step: 1617. Total energy = 4426.1232 kcal/mol (4419.0028 without restraints) Performing minimization step: 1618. Total energy = 4423.7076 kcal/mol (4416.5898 without restraints) Performing minimization step: 1619. Total energy = 4421.2957 kcal/mol (4414.1809 without restraints) Performing minimization step: 1620. Total energy = 4418.8874 kcal/mol (4411.7755 without restraints) Performing minimization step: 1621. Total energy = 4416.4827 kcal/mol (4409.3736 without restraints) Performing minimization step: 1622. Total energy = 4414.0815 kcal/mol (4406.9752 without restraints) Performing minimization step: 1623. Total energy = 4411.6837 kcal/mol (4404.5802 without restraints) Performing minimization step: 1624. Total energy = 4409.2892 kcal/mol (4402.1886 without restraints) Performing minimization step: 1625. Total energy = 4406.8985 kcal/mol (4399.8006 without restraints) Performing minimization step: 1626. Total energy = 4404.5113 kcal/mol (4397.4163 without restraints) Performing minimization step: 1627. Total energy = 4402.1273 kcal/mol (4395.0350 without restraints) Performing minimization step: 1628. Total energy = 4399.7469 kcal/mol (4392.6574 without restraints) Performing minimization step: 1629. Total energy = 4397.3696 kcal/mol (4390.2830 without restraints) Performing minimization step: 1630. Total energy = 4394.9957 kcal/mol (4387.9121 without restraints) Performing minimization step: 1631. Total energy = 4392.6255 kcal/mol (4385.5446 without restraints) Performing minimization step: 1632. Total energy = 4390.2588 kcal/mol (4383.1806 without restraints) Performing minimization step: 1633. Total energy = 4387.8956 kcal/mol (4380.8202 without restraints) Performing minimization step: 1634. Total energy = 4385.5359 kcal/mol (4378.4634 without restraints) Performing minimization step: 1635. Total energy = 4383.1798 kcal/mol (4376.1101 without restraints) Performing minimization step: 1636. Total energy = 4380.8272 kcal/mol (4373.7603 without restraints) Performing minimization step: 1637. Total energy = 4378.4779 kcal/mol (4371.4138 without restraints) Performing minimization step: 1638. Total energy = 4376.1323 kcal/mol (4369.0711 without restraints) Performing minimization step: 1639. Total energy = 4373.7892 kcal/mol (4366.7308 without restraints) Performing minimization step: 1640. Total energy = 4371.4499 kcal/mol (4364.3943 without restraints) Performing minimization step: 1641. Total energy = 4369.1141 kcal/mol (4362.0614 without restraints) Performing minimization step: 1642. Total energy = 4366.7820 kcal/mol (4359.7321 without restraints) Performing minimization step: 1643. Total energy = 4364.4529 kcal/mol (4357.4058 without restraints) Performing minimization step: 1644. Total energy = 4362.1277 kcal/mol (4355.0834 without restraints) Performing minimization step: 1645. Total energy = 4359.8060 kcal/mol (4352.7645 without restraints) Performing minimization step: 1646. Total energy = 4357.4872 kcal/mol (4350.4486 without restraints) Performing minimization step: 1647. Total energy = 4355.1723 kcal/mol (4348.1366 without restraints) Performing minimization step: 1648. Total energy = 4352.8607 kcal/mol (4345.8279 without restraints) Performing minimization step: 1649. Total energy = 4350.5525 kcal/mol (4343.5224 without restraints) Performing minimization step: 1650. Total energy = 4348.2477 kcal/mol (4341.2204 without restraints) Performing minimization step: 1651. Total energy = 4345.9462 kcal/mol (4338.9217 without restraints) Performing minimization step: 1652. Total energy = 4343.6479 kcal/mol (4336.6260 without restraints) Performing minimization step: 1653. Total energy = 4341.3527 kcal/mol (4334.3338 without restraints) Performing minimization step: 1654. Total energy = 4339.0612 kcal/mol (4332.0451 without restraints) Performing minimization step: 1655. Total energy = 4336.7730 kcal/mol (4329.7598 without restraints) Performing minimization step: 1656. Total energy = 4334.4882 kcal/mol (4327.4778 without restraints) Performing minimization step: 1657. Total energy = 4332.2071 kcal/mol (4325.1996 without restraints) Performing minimization step: 1658. Total energy = 4329.9293 kcal/mol (4322.9246 without restraints) Performing minimization step: 1659. Total energy = 4327.6548 kcal/mol (4320.6530 without restraints) Performing minimization step: 1660. Total energy = 4325.3838 kcal/mol (4318.3846 without restraints) Performing minimization step: 1661. Total energy = 4323.1156 kcal/mol (4316.1193 without restraints) Performing minimization step: 1662. Total energy = 4320.8506 kcal/mol (4313.8570 without restraints) Performing minimization step: 1663. Total energy = 4318.5895 kcal/mol (4311.5989 without restraints) Performing minimization step: 1664. Total energy = 4316.3317 kcal/mol (4309.3440 without restraints) Performing minimization step: 1665. Total energy = 4314.0771 kcal/mol (4307.0922 without restraints) Performing minimization step: 1666. Total energy = 4311.8261 kcal/mol (4304.8439 without restraints) Performing minimization step: 1667. Total energy = 4309.5782 kcal/mol (4302.5989 without restraints) Performing minimization step: 1668. Total energy = 4307.3341 kcal/mol (4300.3579 without restraints) Performing minimization step: 1669. Total energy = 4305.0932 kcal/mol (4298.1195 without restraints) Performing minimization step: 1670. Total energy = 4302.8556 kcal/mol (4295.8848 without restraints) Performing minimization step: 1671. Total energy = 4300.6212 kcal/mol (4293.6533 without restraints) Performing minimization step: 1672. Total energy = 4298.3900 kcal/mol (4291.4248 without restraints) Performing minimization step: 1673. Total energy = 4296.1623 kcal/mol (4289.1998 without restraints) Performing minimization step: 1674. Total energy = 4293.9373 kcal/mol (4286.9777 without restraints) Performing minimization step: 1675. Total energy = 4291.7163 kcal/mol (4284.7596 without restraints) Performing minimization step: 1676. Total energy = 4289.4982 kcal/mol (4282.5444 without restraints) Performing minimization step: 1677. Total energy = 4287.2837 kcal/mol (4280.3326 without restraints) Performing minimization step: 1678. Total energy = 4285.0724 kcal/mol (4278.1242 without restraints) Performing minimization step: 1679. Total energy = 4282.8642 kcal/mol (4275.9188 without restraints) Performing minimization step: 1680. Total energy = 4280.6593 kcal/mol (4273.7167 without restraints) Performing minimization step: 1681. Total energy = 4278.4578 kcal/mol (4271.5180 without restraints) Performing minimization step: 1682. Total energy = 4276.2598 kcal/mol (4269.3228 without restraints) Performing minimization step: 1683. Total energy = 4274.0651 kcal/mol (4267.1309 without restraints) Performing minimization step: 1684. Total energy = 4271.8732 kcal/mol (4264.9418 without restraints) Performing minimization step: 1685. Total energy = 4269.6857 kcal/mol (4262.7573 without restraints) Performing minimization step: 1686. Total energy = 4267.5010 kcal/mol (4260.5754 without restraints) Performing minimization step: 1687. Total energy = 4265.3197 kcal/mol (4258.3969 without restraints) Performing minimization step: 1688. Total energy = 4263.1409 kcal/mol (4256.2210 without restraints) Performing minimization step: 1689. Total energy = 4260.9657 kcal/mol (4254.0486 without restraints) Performing minimization step: 1690. Total energy = 4258.7938 kcal/mol (4251.8796 without restraints) Performing minimization step: 1691. Total energy = 4256.6255 kcal/mol (4249.7142 without restraints) Performing minimization step: 1692. Total energy = 4254.4605 kcal/mol (4247.5520 without restraints) Performing minimization step: 1693. Total energy = 4252.2987 kcal/mol (4245.3931 without restraints) Performing minimization step: 1694. Total energy = 4250.1401 kcal/mol (4243.2371 without restraints) Performing minimization step: 1695. Total energy = 4247.9845 kcal/mol (4241.0843 without restraints) Performing minimization step: 1696. Total energy = 4245.8326 kcal/mol (4238.9353 without restraints) Performing minimization step: 1697. Total energy = 4243.6835 kcal/mol (4236.7891 without restraints) Performing minimization step: 1698. Total energy = 4241.5376 kcal/mol (4234.6459 without restraints) Performing minimization step: 1699. Total energy = 4239.3947 kcal/mol (4232.5059 without restraints) Performing minimization step: 1700. Total energy = 4237.2549 kcal/mol (4230.3689 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 4235.1189 kcal/mol (4228.2357 without restraints) Performing minimization step: 1702. Total energy = 4232.9861 kcal/mol (4226.1058 without restraints) Performing minimization step: 1703. Total energy = 4230.8565 kcal/mol (4223.9791 without restraints) Performing minimization step: 1704. Total energy = 4228.7305 kcal/mol (4221.8559 without restraints) Performing minimization step: 1705. Total energy = 4226.6073 kcal/mol (4219.7355 without restraints) Performing minimization step: 1706. Total energy = 4224.4872 kcal/mol (4217.6182 without restraints) Performing minimization step: 1707. Total energy = 4222.3703 kcal/mol (4215.5042 without restraints) Performing minimization step: 1708. Total energy = 4220.2569 kcal/mol (4213.3936 without restraints) Performing minimization step: 1709. Total energy = 4218.1465 kcal/mol (4211.2861 without restraints) Performing minimization step: 1710. Total energy = 4216.0395 kcal/mol (4209.1819 without restraints) Performing minimization step: 1711. Total energy = 4213.9357 kcal/mol (4207.0809 without restraints) Performing minimization step: 1712. Total energy = 4211.8351 kcal/mol (4204.9831 without restraints) Performing minimization step: 1713. Total energy = 4209.7379 kcal/mol (4202.8888 without restraints) Performing minimization step: 1714. Total energy = 4207.6433 kcal/mol (4200.7969 without restraints) Performing minimization step: 1715. Total energy = 4205.5520 kcal/mol (4198.7085 without restraints) Performing minimization step: 1716. Total energy = 4203.4642 kcal/mol (4196.6237 without restraints) Performing minimization step: 1717. Total energy = 4201.3801 kcal/mol (4194.5424 without restraints) Performing minimization step: 1718. Total energy = 4199.2986 kcal/mol (4192.4637 without restraints) Performing minimization step: 1719. Total energy = 4197.2203 kcal/mol (4190.3883 without restraints) Performing minimization step: 1720. Total energy = 4195.1451 kcal/mol (4188.3157 without restraints) Performing minimization step: 1721. Total energy = 4193.0727 kcal/mol (4186.2462 without restraints) Performing minimization step: 1722. Total energy = 4191.0043 kcal/mol (4184.1807 without restraints) Performing minimization step: 1723. Total energy = 4188.9388 kcal/mol (4182.1180 without restraints) Performing minimization step: 1724. Total energy = 4186.8764 kcal/mol (4180.0584 without restraints) Performing minimization step: 1725. Total energy = 4184.8177 kcal/mol (4178.0027 without restraints) Performing minimization step: 1726. Total energy = 4182.7617 kcal/mol (4175.9494 without restraints) Performing minimization step: 1727. Total energy = 4180.7085 kcal/mol (4173.8991 without restraints) Performing minimization step: 1728. Total energy = 4178.6588 kcal/mol (4171.8522 without restraints) Performing minimization step: 1729. Total energy = 4176.6122 kcal/mol (4169.8084 without restraints) Performing minimization step: 1730. Total energy = 4174.5686 kcal/mol (4167.7677 without restraints) Performing minimization step: 1731. Total energy = 4172.5287 kcal/mol (4165.7306 without restraints) Performing minimization step: 1732. Total energy = 4170.4914 kcal/mol (4163.6962 without restraints) Performing minimization step: 1733. Total energy = 4168.4573 kcal/mol (4161.6649 without restraints) Performing minimization step: 1734. Total energy = 4166.4263 kcal/mol (4159.6368 without restraints) Performing minimization step: 1735. Total energy = 4164.3984 kcal/mol (4157.6116 without restraints) Performing minimization step: 1736. Total energy = 4162.3741 kcal/mol (4155.5902 without restraints) Performing minimization step: 1737. Total energy = 4160.3531 kcal/mol (4153.5721 without restraints) Performing minimization step: 1738. Total energy = 4158.3346 kcal/mol (4151.5564 without restraints) Performing minimization step: 1739. Total energy = 4156.3192 kcal/mol (4149.5439 without restraints) Performing minimization step: 1740. Total energy = 4154.3070 kcal/mol (4147.5345 without restraints) Performing minimization step: 1741. Total energy = 4152.2981 kcal/mol (4145.5285 without restraints) Performing minimization step: 1742. Total energy = 4150.2921 kcal/mol (4143.5253 without restraints) Performing minimization step: 1743. Total energy = 4148.2895 kcal/mol (4141.5255 without restraints) Performing minimization step: 1744. Total energy = 4146.2895 kcal/mol (4139.5284 without restraints) Performing minimization step: 1745. Total energy = 4144.2929 kcal/mol (4137.5347 without restraints) Performing minimization step: 1746. Total energy = 4142.2997 kcal/mol (4135.5444 without restraints) Performing minimization step: 1747. Total energy = 4140.3097 kcal/mol (4133.5571 without restraints) Performing minimization step: 1748. Total energy = 4138.3224 kcal/mol (4131.5727 without restraints) Performing minimization step: 1749. Total energy = 4136.3382 kcal/mol (4129.5913 without restraints) Performing minimization step: 1750. Total energy = 4134.3571 kcal/mol (4127.6130 without restraints) Performing minimization step: 1751. Total energy = 4132.3791 kcal/mol (4125.6379 without restraints) Performing minimization step: 1752. Total energy = 4130.4046 kcal/mol (4123.6661 without restraints) Performing minimization step: 1753. Total energy = 4128.4331 kcal/mol (4121.6975 without restraints) Performing minimization step: 1754. Total energy = 4126.4644 kcal/mol (4119.7317 without restraints) Performing minimization step: 1755. Total energy = 4124.4987 kcal/mol (4117.7689 without restraints) Performing minimization step: 1756. Total energy = 4122.5361 kcal/mol (4115.8091 without restraints) Performing minimization step: 1757. Total energy = 4120.5765 kcal/mol (4113.8523 without restraints) Performing minimization step: 1758. Total energy = 4118.6199 kcal/mol (4111.8985 without restraints) Performing minimization step: 1759. Total energy = 4116.6665 kcal/mol (4109.9480 without restraints) Performing minimization step: 1760. Total energy = 4114.7166 kcal/mol (4108.0009 without restraints) Performing minimization step: 1761. Total energy = 4112.7691 kcal/mol (4106.0563 without restraints) Performing minimization step: 1762. Total energy = 4110.8245 kcal/mol (4104.1146 without restraints) Performing minimization step: 1763. Total energy = 4108.8833 kcal/mol (4102.1762 without restraints) Performing minimization step: 1764. Total energy = 4106.9450 kcal/mol (4100.2407 without restraints) Performing minimization step: 1765. Total energy = 4105.0097 kcal/mol (4098.3084 without restraints) Performing minimization step: 1766. Total energy = 4103.0777 kcal/mol (4096.3792 without restraints) Performing minimization step: 1767. Total energy = 4101.1484 kcal/mol (4094.4526 without restraints) Performing minimization step: 1768. Total energy = 4099.2220 kcal/mol (4092.5292 without restraints) Performing minimization step: 1769. Total energy = 4097.2986 kcal/mol (4090.6086 without restraints) Performing minimization step: 1770. Total energy = 4095.3786 kcal/mol (4088.6914 without restraints) Performing minimization step: 1771. Total energy = 4093.4609 kcal/mol (4086.7766 without restraints) Performing minimization step: 1772. Total energy = 4091.5467 kcal/mol (4084.8652 without restraints) Performing minimization step: 1773. Total energy = 4089.6355 kcal/mol (4082.9569 without restraints) Performing minimization step: 1774. Total energy = 4087.7280 kcal/mol (4081.0521 without restraints) Performing minimization step: 1775. Total energy = 4085.8231 kcal/mol (4079.1502 without restraints) Performing minimization step: 1776. Total energy = 4083.9210 kcal/mol (4077.2508 without restraints) Performing minimization step: 1777. Total energy = 4082.0215 kcal/mol (4075.3543 without restraints) Performing minimization step: 1778. Total energy = 4080.1252 kcal/mol (4073.4608 without restraints) Performing minimization step: 1779. Total energy = 4078.2321 kcal/mol (4071.5705 without restraints) Performing minimization step: 1780. Total energy = 4076.3422 kcal/mol (4069.6835 without restraints) Performing minimization step: 1781. Total energy = 4074.4548 kcal/mol (4067.7989 without restraints) Performing minimization step: 1782. Total energy = 4072.5709 kcal/mol (4065.9179 without restraints) Performing minimization step: 1783. Total energy = 4070.6896 kcal/mol (4064.0393 without restraints) Performing minimization step: 1784. Total energy = 4068.8115 kcal/mol (4062.1641 without restraints) Performing minimization step: 1785. Total energy = 4066.9362 kcal/mol (4060.2917 without restraints) Performing minimization step: 1786. Total energy = 4065.0632 kcal/mol (4058.4214 without restraints) Performing minimization step: 1787. Total energy = 4063.1940 kcal/mol (4056.5554 without restraints) Performing minimization step: 1788. Total energy = 4061.3278 kcal/mol (4054.6918 without restraints) Performing minimization step: 1789. Total energy = 4059.4647 kcal/mol (4052.8320 without restraints) Performing minimization step: 1790. Total energy = 4057.6046 kcal/mol (4050.9744 without restraints) Performing minimization step: 1791. Total energy = 4055.7470 kcal/mol (4049.1196 without restraints) Performing minimization step: 1792. Total energy = 4053.8929 kcal/mol (4047.2683 without restraints) Performing minimization step: 1793. Total energy = 4052.0412 kcal/mol (4045.4196 without restraints) Performing minimization step: 1794. Total energy = 4050.1926 kcal/mol (4043.5738 without restraints) Performing minimization step: 1795. Total energy = 4048.3468 kcal/mol (4041.7309 without restraints) Performing minimization step: 1796. Total energy = 4046.5041 kcal/mol (4039.8909 without restraints) Performing minimization step: 1797. Total energy = 4044.6639 kcal/mol (4038.0537 without restraints) Performing minimization step: 1798. Total energy = 4042.8270 kcal/mol (4036.2196 without restraints) Performing minimization step: 1799. Total energy = 4040.9931 kcal/mol (4034.3886 without restraints) Performing minimization step: 1800. Total energy = 4039.1617 kcal/mol (4032.5600 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 4037.3336 kcal/mol (4030.7347 without restraints) Performing minimization step: 1802. Total energy = 4035.5086 kcal/mol (4028.9126 without restraints) Performing minimization step: 1803. Total energy = 4033.6864 kcal/mol (4027.0935 without restraints) Performing minimization step: 1804. Total energy = 4031.8676 kcal/mol (4025.2773 without restraints) Performing minimization step: 1805. Total energy = 4030.0509 kcal/mol (4023.4636 without restraints) Performing minimization step: 1806. Total energy = 4028.2375 kcal/mol (4021.6529 without restraints) Performing minimization step: 1807. Total energy = 4026.4270 kcal/mol (4019.8452 without restraints) Performing minimization step: 1808. Total energy = 4024.6194 kcal/mol (4018.0406 without restraints) Performing minimization step: 1809. Total energy = 4022.8144 kcal/mol (4016.2383 without restraints) Performing minimization step: 1810. Total energy = 4021.0119 kcal/mol (4014.4388 without restraints) Performing minimization step: 1811. Total energy = 4019.2130 kcal/mol (4012.6427 without restraints) Performing minimization step: 1812. Total energy = 4017.4168 kcal/mol (4010.8493 without restraints) Performing minimization step: 1813. Total energy = 4015.6235 kcal/mol (4009.0589 without restraints) Performing minimization step: 1814. Total energy = 4013.8332 kcal/mol (4007.2715 without restraints) Performing minimization step: 1815. Total energy = 4012.0454 kcal/mol (4005.4865 without restraints) Performing minimization step: 1816. Total energy = 4010.2609 kcal/mol (4003.7049 without restraints) Performing minimization step: 1817. Total energy = 4008.4790 kcal/mol (4001.9259 without restraints) Performing minimization step: 1818. Total energy = 4006.6999 kcal/mol (4000.1496 without restraints) Performing minimization step: 1819. Total energy = 4004.9242 kcal/mol (3998.3768 without restraints) Performing minimization step: 1820. Total energy = 4003.1512 kcal/mol (3996.6067 without restraints) Performing minimization step: 1821. Total energy = 4001.3809 kcal/mol (3994.8391 without restraints) Performing minimization step: 1822. Total energy = 3999.6135 kcal/mol (3993.0746 without restraints) Performing minimization step: 1823. Total energy = 3997.8490 kcal/mol (3991.3129 without restraints) Performing minimization step: 1824. Total energy = 3996.0867 kcal/mol (3989.5535 without restraints) Performing minimization step: 1825. Total energy = 3994.3270 kcal/mol (3987.7967 without restraints) Performing minimization step: 1826. Total energy = 3992.5711 kcal/mol (3986.0438 without restraints) Performing minimization step: 1827. Total energy = 3990.8181 kcal/mol (3984.2937 without restraints) Performing minimization step: 1828. Total energy = 3989.0677 kcal/mol (3982.5459 without restraints) Performing minimization step: 1829. Total energy = 3987.3197 kcal/mol (3980.8008 without restraints) Performing minimization step: 1830. Total energy = 3985.5748 kcal/mol (3979.0587 without restraints) Performing minimization step: 1831. Total energy = 3983.8325 kcal/mol (3977.3193 without restraints) Performing minimization step: 1832. Total energy = 3982.0933 kcal/mol (3975.5831 without restraints) Performing minimization step: 1833. Total energy = 3980.3573 kcal/mol (3973.8499 without restraints) Performing minimization step: 1834. Total energy = 3978.6235 kcal/mol (3972.1189 without restraints) Performing minimization step: 1835. Total energy = 3976.8929 kcal/mol (3970.3913 without restraints) Performing minimization step: 1836. Total energy = 3975.1652 kcal/mol (3968.6662 without restraints) Performing minimization step: 1837. Total energy = 3973.4399 kcal/mol (3966.9439 without restraints) Performing minimization step: 1838. Total energy = 3971.7175 kcal/mol (3965.2243 without restraints) Performing minimization step: 1839. Total energy = 3969.9979 kcal/mol (3963.5076 without restraints) Performing minimization step: 1840. Total energy = 3968.2811 kcal/mol (3961.7937 without restraints) Performing minimization step: 1841. Total energy = 3966.5671 kcal/mol (3960.0826 without restraints) Performing minimization step: 1842. Total energy = 3964.8559 kcal/mol (3958.3742 without restraints) Performing minimization step: 1843. Total energy = 3963.1473 kcal/mol (3956.6684 without restraints) Performing minimization step: 1844. Total energy = 3961.4413 kcal/mol (3954.9651 without restraints) Performing minimization step: 1845. Total energy = 3959.7383 kcal/mol (3953.2651 without restraints) Performing minimization step: 1846. Total energy = 3958.0382 kcal/mol (3951.5679 without restraints) Performing minimization step: 1847. Total energy = 3956.3405 kcal/mol (3949.8731 without restraints) Performing minimization step: 1848. Total energy = 3954.6457 kcal/mol (3948.1812 without restraints) Performing minimization step: 1849. Total energy = 3952.9539 kcal/mol (3946.4923 without restraints) Performing minimization step: 1850. Total energy = 3951.2648 kcal/mol (3944.8060 without restraints) Performing minimization step: 1851. Total energy = 3949.5785 kcal/mol (3943.1226 without restraints) Performing minimization step: 1852. Total energy = 3947.8950 kcal/mol (3941.4419 without restraints) Performing minimization step: 1853. Total energy = 3946.2141 kcal/mol (3939.7639 without restraints) Performing minimization step: 1854. Total energy = 3944.5361 kcal/mol (3938.0887 without restraints) Performing minimization step: 1855. Total energy = 3942.8607 kcal/mol (3936.4162 without restraints) Performing minimization step: 1856. Total energy = 3941.1883 kcal/mol (3934.7466 without restraints) Performing minimization step: 1857. Total energy = 3939.5189 kcal/mol (3933.0801 without restraints) Performing minimization step: 1858. Total energy = 3937.8520 kcal/mol (3931.4162 without restraints) Performing minimization step: 1859. Total energy = 3936.1880 kcal/mol (3929.7549 without restraints) Performing minimization step: 1860. Total energy = 3934.5263 kcal/mol (3928.0961 without restraints) Performing minimization step: 1861. Total energy = 3932.8674 kcal/mol (3926.4401 without restraints) Performing minimization step: 1862. Total energy = 3931.2111 kcal/mol (3924.7866 without restraints) Performing minimization step: 1863. Total energy = 3929.5577 kcal/mol (3923.1361 without restraints) Performing minimization step: 1864. Total energy = 3927.9071 kcal/mol (3921.4883 without restraints) Performing minimization step: 1865. Total energy = 3926.2590 kcal/mol (3919.8433 without restraints) Performing minimization step: 1866. Total energy = 3924.6139 kcal/mol (3918.2009 without restraints) Performing minimization step: 1867. Total energy = 3922.9712 kcal/mol (3916.5610 without restraints) Performing minimization step: 1868. Total energy = 3921.3315 kcal/mol (3914.9243 without restraints) Performing minimization step: 1869. Total energy = 3919.6940 kcal/mol (3913.2896 without restraints) Performing minimization step: 1870. Total energy = 3918.0597 kcal/mol (3911.6582 without restraints) Performing minimization step: 1871. Total energy = 3916.4278 kcal/mol (3910.0291 without restraints) Performing minimization step: 1872. Total energy = 3914.7989 kcal/mol (3908.4030 without restraints) Performing minimization step: 1873. Total energy = 3913.1723 kcal/mol (3906.7795 without restraints) Performing minimization step: 1874. Total energy = 3911.5483 kcal/mol (3905.1582 without restraints) Performing minimization step: 1875. Total energy = 3909.9267 kcal/mol (3903.5395 without restraints) Performing minimization step: 1876. Total energy = 3908.3083 kcal/mol (3901.9240 without restraints) Performing minimization step: 1877. Total energy = 3906.6924 kcal/mol (3900.3109 without restraints) Performing minimization step: 1878. Total energy = 3905.0790 kcal/mol (3898.7004 without restraints) Performing minimization step: 1879. Total energy = 3903.4682 kcal/mol (3897.0924 without restraints) Performing minimization step: 1880. Total energy = 3901.8600 kcal/mol (3895.4871 without restraints) Performing minimization step: 1881. Total energy = 3900.2548 kcal/mol (3893.8848 without restraints) Performing minimization step: 1882. Total energy = 3898.6528 kcal/mol (3892.2857 without restraints) Performing minimization step: 1883. Total energy = 3897.0527 kcal/mol (3890.6883 without restraints) Performing minimization step: 1884. Total energy = 3895.4549 kcal/mol (3889.0933 without restraints) Performing minimization step: 1885. Total energy = 3893.8601 kcal/mol (3887.5016 without restraints) Performing minimization step: 1886. Total energy = 3892.2684 kcal/mol (3885.9128 without restraints) Performing minimization step: 1887. Total energy = 3890.6786 kcal/mol (3884.3257 without restraints) Performing minimization step: 1888. Total energy = 3889.0918 kcal/mol (3882.7418 without restraints) Performing minimization step: 1889. Total energy = 3887.5075 kcal/mol (3881.1604 without restraints) Performing minimization step: 1890. Total energy = 3885.9257 kcal/mol (3879.5817 without restraints) Performing minimization step: 1891. Total energy = 3884.3473 kcal/mol (3878.0060 without restraints) Performing minimization step: 1892. Total energy = 3882.7708 kcal/mol (3876.4321 without restraints) Performing minimization step: 1893. Total energy = 3881.1970 kcal/mol (3874.8614 without restraints) Performing minimization step: 1894. Total energy = 3879.6258 kcal/mol (3873.2930 without restraints) Performing minimization step: 1895. Total energy = 3878.0571 kcal/mol (3871.7272 without restraints) Performing minimization step: 1896. Total energy = 3876.4914 kcal/mol (3870.1644 without restraints) Performing minimization step: 1897. Total energy = 3874.9280 kcal/mol (3868.6039 without restraints) Performing minimization step: 1898. Total energy = 3873.3676 kcal/mol (3867.0463 without restraints) Performing minimization step: 1899. Total energy = 3871.8096 kcal/mol (3865.4912 without restraints) Performing minimization step: 1900. Total energy = 3870.2541 kcal/mol (3863.9385 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 3868.7009 kcal/mol (3862.3881 without restraints) Performing minimization step: 1902. Total energy = 3867.1498 kcal/mol (3860.8400 without restraints) Performing minimization step: 1903. Total energy = 3865.6022 kcal/mol (3859.2953 without restraints) Performing minimization step: 1904. Total energy = 3864.0571 kcal/mol (3857.7530 without restraints) Performing minimization step: 1905. Total energy = 3862.5143 kcal/mol (3856.2130 without restraints) Performing minimization step: 1906. Total energy = 3860.9738 kcal/mol (3854.6755 without restraints) Performing minimization step: 1907. Total energy = 3859.4359 kcal/mol (3853.1404 without restraints) Performing minimization step: 1908. Total energy = 3857.9009 kcal/mol (3851.6084 without restraints) Performing minimization step: 1909. Total energy = 3856.3682 kcal/mol (3850.0784 without restraints) Performing minimization step: 1910. Total energy = 3854.8384 kcal/mol (3848.5517 without restraints) Performing minimization step: 1911. Total energy = 3853.3113 kcal/mol (3847.0274 without restraints) Performing minimization step: 1912. Total energy = 3851.7864 kcal/mol (3845.5052 without restraints) Performing minimization step: 1913. Total energy = 3850.2638 kcal/mol (3843.9856 without restraints) Performing minimization step: 1914. Total energy = 3848.7438 kcal/mol (3842.4683 without restraints) Performing minimization step: 1915. Total energy = 3847.2263 kcal/mol (3840.9538 without restraints) Performing minimization step: 1916. Total energy = 3845.7115 kcal/mol (3839.4418 without restraints) Performing minimization step: 1917. Total energy = 3844.1993 kcal/mol (3837.9324 without restraints) Performing minimization step: 1918. Total energy = 3842.6894 kcal/mol (3836.4255 without restraints) Performing minimization step: 1919. Total energy = 3841.1821 kcal/mol (3834.9211 without restraints) Performing minimization step: 1920. Total energy = 3839.6771 kcal/mol (3833.4189 without restraints) Performing minimization step: 1921. Total energy = 3838.1745 kcal/mol (3831.9192 without restraints) Performing minimization step: 1922. Total energy = 3836.6746 kcal/mol (3830.4221 without restraints) Performing minimization step: 1923. Total energy = 3835.1771 kcal/mol (3828.9274 without restraints) Performing minimization step: 1924. Total energy = 3833.6821 kcal/mol (3827.4354 without restraints) Performing minimization step: 1925. Total energy = 3832.1897 kcal/mol (3825.9459 without restraints) Performing minimization step: 1926. Total energy = 3830.7001 kcal/mol (3824.4592 without restraints) Performing minimization step: 1927. Total energy = 3829.2128 kcal/mol (3822.9747 without restraints) Performing minimization step: 1928. Total energy = 3827.7277 kcal/mol (3821.4924 without restraints) Performing minimization step: 1929. Total energy = 3826.2453 kcal/mol (3820.0129 without restraints) Performing minimization step: 1930. Total energy = 3824.7652 kcal/mol (3818.5357 without restraints) Performing minimization step: 1931. Total energy = 3823.2872 kcal/mol (3817.0606 without restraints) Performing minimization step: 1932. Total energy = 3821.8124 kcal/mol (3815.5887 without restraints) Performing minimization step: 1933. Total energy = 3820.3399 kcal/mol (3814.1191 without restraints) Performing minimization step: 1934. Total energy = 3818.8702 kcal/mol (3812.6522 without restraints) Performing minimization step: 1935. Total energy = 3817.4028 kcal/mol (3811.1878 without restraints) Performing minimization step: 1936. Total energy = 3815.9375 kcal/mol (3809.7254 without restraints) Performing minimization step: 1937. Total energy = 3814.4752 kcal/mol (3808.2660 without restraints) Performing minimization step: 1938. Total energy = 3813.0152 kcal/mol (3806.8087 without restraints) Performing minimization step: 1939. Total energy = 3811.5572 kcal/mol (3805.3536 without restraints) Performing minimization step: 1940. Total energy = 3810.1020 kcal/mol (3803.9012 without restraints) Performing minimization step: 1941. Total energy = 3808.6490 kcal/mol (3802.4511 without restraints) Performing minimization step: 1942. Total energy = 3807.1984 kcal/mol (3801.0035 without restraints) Performing minimization step: 1943. Total energy = 3805.7500 kcal/mol (3799.5579 without restraints) Performing minimization step: 1944. Total energy = 3804.3045 kcal/mol (3798.1152 without restraints) Performing minimization step: 1945. Total energy = 3802.8607 kcal/mol (3796.6743 without restraints) Performing minimization step: 1946. Total energy = 3801.4198 kcal/mol (3795.2362 without restraints) Performing minimization step: 1947. Total energy = 3799.9812 kcal/mol (3793.8005 without restraints) Performing minimization step: 1948. Total energy = 3798.5450 kcal/mol (3792.3671 without restraints) Performing minimization step: 1949. Total energy = 3797.1112 kcal/mol (3790.9363 without restraints) Performing minimization step: 1950. Total energy = 3795.6799 kcal/mol (3789.5078 without restraints) Performing minimization step: 1951. Total energy = 3794.2509 kcal/mol (3788.0817 without restraints) Performing minimization step: 1952. Total energy = 3792.8243 kcal/mol (3786.6580 without restraints) Performing minimization step: 1953. Total energy = 3791.4003 kcal/mol (3785.2368 without restraints) Performing minimization step: 1954. Total energy = 3789.9785 kcal/mol (3783.8179 without restraints) Performing minimization step: 1955. Total energy = 3788.5591 kcal/mol (3782.4014 without restraints) Performing minimization step: 1956. Total energy = 3787.1421 kcal/mol (3780.9873 without restraints) Performing minimization step: 1957. Total energy = 3785.7274 kcal/mol (3779.5755 without restraints) Performing minimization step: 1958. Total energy = 3784.3146 kcal/mol (3778.1655 without restraints) Performing minimization step: 1959. Total energy = 3782.9045 kcal/mol (3776.7583 without restraints) Performing minimization step: 1960. Total energy = 3781.4967 kcal/mol (3775.3533 without restraints) Performing minimization step: 1961. Total energy = 3780.0911 kcal/mol (3773.9506 without restraints) Performing minimization step: 1962. Total energy = 3778.6884 kcal/mol (3772.5507 without restraints) Performing minimization step: 1963. Total energy = 3777.2881 kcal/mol (3771.1534 without restraints) Performing minimization step: 1964. Total energy = 3775.8897 kcal/mol (3769.7578 without restraints) Performing minimization step: 1965. Total energy = 3774.4933 kcal/mol (3768.3643 without restraints) Performing minimization step: 1966. Total energy = 3773.0997 kcal/mol (3766.9736 without restraints) Performing minimization step: 1967. Total energy = 3771.7084 kcal/mol (3765.5851 without restraints) Performing minimization step: 1968. Total energy = 3770.3198 kcal/mol (3764.1994 without restraints) Performing minimization step: 1969. Total energy = 3768.9323 kcal/mol (3762.8148 without restraints) Performing minimization step: 1970. Total energy = 3767.5480 kcal/mol (3761.4334 without restraints) Performing minimization step: 1971. Total energy = 3766.1662 kcal/mol (3760.0545 without restraints) Performing minimization step: 1972. Total energy = 3764.7866 kcal/mol (3758.6777 without restraints) Performing minimization step: 1973. Total energy = 3763.4099 kcal/mol (3757.3039 without restraints) Performing minimization step: 1974. Total energy = 3762.0351 kcal/mol (3755.9319 without restraints) Performing minimization step: 1975. Total energy = 3760.6619 kcal/mol (3754.5615 without restraints) Performing minimization step: 1976. Total energy = 3759.2913 kcal/mol (3753.1939 without restraints) Performing minimization step: 1977. Total energy = 3757.9229 kcal/mol (3751.8283 without restraints) Performing minimization step: 1978. Total energy = 3756.5570 kcal/mol (3750.4653 without restraints) Performing minimization step: 1979. Total energy = 3755.1933 kcal/mol (3749.1045 without restraints) Performing minimization step: 1980. Total energy = 3753.8322 kcal/mol (3747.7462 without restraints) Performing minimization step: 1981. Total energy = 3752.4729 kcal/mol (3746.3898 without restraints) Performing minimization step: 1982. Total energy = 3751.1163 kcal/mol (3745.0361 without restraints) Performing minimization step: 1983. Total energy = 3749.7620 kcal/mol (3743.6848 without restraints) Performing minimization step: 1984. Total energy = 3748.4098 kcal/mol (3742.3353 without restraints) Performing minimization step: 1985. Total energy = 3747.0597 kcal/mol (3740.9881 without restraints) Performing minimization step: 1986. Total energy = 3745.7124 kcal/mol (3739.6437 without restraints) Performing minimization step: 1987. Total energy = 3744.3672 kcal/mol (3738.3014 without restraints) Performing minimization step: 1988. Total energy = 3743.0241 kcal/mol (3736.9611 without restraints) Performing minimization step: 1989. Total energy = 3741.6830 kcal/mol (3735.6228 without restraints) Performing minimization step: 1990. Total energy = 3740.3442 kcal/mol (3734.2870 without restraints) Performing minimization step: 1991. Total energy = 3739.0077 kcal/mol (3732.9533 without restraints) Performing minimization step: 1992. Total energy = 3737.6735 kcal/mol (3731.6220 without restraints) Performing minimization step: 1993. Total energy = 3736.3416 kcal/mol (3730.2929 without restraints) Performing minimization step: 1994. Total energy = 3735.0116 kcal/mol (3728.9659 without restraints) Performing minimization step: 1995. Total energy = 3733.6839 kcal/mol (3727.6410 without restraints) Performing minimization step: 1996. Total energy = 3732.3588 kcal/mol (3726.3187 without restraints) Performing minimization step: 1997. Total energy = 3731.0353 kcal/mol (3724.9982 without restraints) Performing minimization step: 1998. Total energy = 3729.7145 kcal/mol (3723.6802 without restraints) Performing minimization step: 1999. Total energy = 3728.3956 kcal/mol (3722.3642 without restraints) Performing minimization step: 2000. Total energy = 3727.0789 kcal/mol (3721.0503 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 3725.7644 kcal/mol (3719.7387 without restraints) Performing minimization step: 2002. Total energy = 3724.4519 kcal/mol (3718.4291 without restraints) Performing minimization step: 2003. Total energy = 3723.1418 kcal/mol (3717.1219 without restraints) Performing minimization step: 2004. Total energy = 3721.8343 kcal/mol (3715.8172 without restraints) Performing minimization step: 2005. Total energy = 3720.5283 kcal/mol (3714.5138 without restraints) Performing minimization step: 2006. Total energy = 3719.2245 kcal/mol (3713.2130 without restraints) Performing minimization step: 2007. Total energy = 3717.9230 kcal/mol (3711.9144 without restraints) Performing minimization step: 2008. Total energy = 3716.6237 kcal/mol (3710.6180 without restraints) Performing minimization step: 2009. Total energy = 3715.3263 kcal/mol (3709.3235 without restraints) Performing minimization step: 2010. Total energy = 3714.0312 kcal/mol (3708.0312 without restraints) Performing minimization step: 2011. Total energy = 3712.7384 kcal/mol (3706.7413 without restraints) Performing minimization step: 2012. Total energy = 3711.4477 kcal/mol (3705.4535 without restraints) Performing minimization step: 2013. Total energy = 3710.1592 kcal/mol (3704.1678 without restraints) Performing minimization step: 2014. Total energy = 3708.8724 kcal/mol (3702.8839 without restraints) Performing minimization step: 2015. Total energy = 3707.5881 kcal/mol (3701.6025 without restraints) Performing minimization step: 2016. Total energy = 3706.3059 kcal/mol (3700.3232 without restraints) Performing minimization step: 2017. Total energy = 3705.0260 kcal/mol (3699.0461 without restraints) Performing minimization step: 2018. Total energy = 3703.7481 kcal/mol (3697.7710 without restraints) Performing minimization step: 2019. Total energy = 3702.4723 kcal/mol (3696.4981 without restraints) Performing minimization step: 2020. Total energy = 3701.1987 kcal/mol (3695.2275 without restraints) Performing minimization step: 2021. Total energy = 3699.9268 kcal/mol (3693.9583 without restraints) Performing minimization step: 2022. Total energy = 3698.6571 kcal/mol (3692.6915 without restraints) Performing minimization step: 2023. Total energy = 3697.3895 kcal/mol (3691.4268 without restraints) Performing minimization step: 2024. Total energy = 3696.1237 kcal/mol (3690.1638 without restraints) Performing minimization step: 2025. Total energy = 3694.8604 kcal/mol (3688.9034 without restraints) Performing minimization step: 2026. Total energy = 3693.5993 kcal/mol (3687.6452 without restraints) Performing minimization step: 2027. Total energy = 3692.3408 kcal/mol (3686.3896 without restraints) Performing minimization step: 2028. Total energy = 3691.0839 kcal/mol (3685.1355 without restraints) Performing minimization step: 2029. Total energy = 3689.8288 kcal/mol (3683.8832 without restraints) Performing minimization step: 2030. Total energy = 3688.5760 kcal/mol (3682.6333 without restraints) Performing minimization step: 2031. Total energy = 3687.3253 kcal/mol (3681.3855 without restraints) Performing minimization step: 2032. Total energy = 3686.0764 kcal/mol (3680.1395 without restraints) Performing minimization step: 2033. Total energy = 3684.8301 kcal/mol (3678.8960 without restraints) Performing minimization step: 2034. Total energy = 3683.5856 kcal/mol (3677.6543 without restraints) Performing minimization step: 2035. Total energy = 3682.3429 kcal/mol (3676.4144 without restraints) Performing minimization step: 2036. Total energy = 3681.1023 kcal/mol (3675.1767 without restraints) Performing minimization step: 2037. Total energy = 3679.8638 kcal/mol (3673.9411 without restraints) Performing minimization step: 2038. Total energy = 3678.6275 kcal/mol (3672.7076 without restraints) Performing minimization step: 2039. Total energy = 3677.3932 kcal/mol (3671.4764 without restraints) Performing minimization step: 2040. Total energy = 3676.1605 kcal/mol (3670.2464 without restraints) Performing minimization step: 2041. Total energy = 3674.9302 kcal/mol (3669.0189 without restraints) Performing minimization step: 2042. Total energy = 3673.7017 kcal/mol (3667.7932 without restraints) Performing minimization step: 2043. Total energy = 3672.4754 kcal/mol (3666.5700 without restraints) Performing minimization step: 2044. Total energy = 3671.2513 kcal/mol (3665.3487 without restraints) Performing minimization step: 2045. Total energy = 3670.0295 kcal/mol (3664.1298 without restraints) Performing minimization step: 2046. Total energy = 3668.8093 kcal/mol (3662.9123 without restraints) Performing minimization step: 2047. Total energy = 3667.5914 kcal/mol (3661.6972 without restraints) Performing minimization step: 2048. Total energy = 3666.3755 kcal/mol (3660.4842 without restraints) Performing minimization step: 2049. Total energy = 3665.1611 kcal/mol (3659.2727 without restraints) Performing minimization step: 2050. Total energy = 3663.9491 kcal/mol (3658.0635 without restraints) Performing minimization step: 2051. Total energy = 3662.7388 kcal/mol (3656.8561 without restraints) Performing minimization step: 2052. Total energy = 3661.5309 kcal/mol (3655.6510 without restraints) Performing minimization step: 2053. Total energy = 3660.3247 kcal/mol (3654.4477 without restraints) Performing minimization step: 2054. Total energy = 3659.1206 kcal/mol (3653.2464 without restraints) Performing minimization step: 2055. Total energy = 3657.9182 kcal/mol (3652.0471 without restraints) Performing minimization step: 2056. Total energy = 3656.7181 kcal/mol (3650.8496 without restraints) Performing minimization step: 2057. Total energy = 3655.5193 kcal/mol (3649.6536 without restraints) Performing minimization step: 2058. Total energy = 3654.3231 kcal/mol (3648.4603 without restraints) Performing minimization step: 2059. Total energy = 3653.1286 kcal/mol (3647.2686 without restraints) Performing minimization step: 2060. Total energy = 3651.9367 kcal/mol (3646.0796 without restraints) Performing minimization step: 2061. Total energy = 3650.7459 kcal/mol (3644.8917 without restraints) Performing minimization step: 2062. Total energy = 3649.5570 kcal/mol (3643.7056 without restraints) Performing minimization step: 2063. Total energy = 3648.3702 kcal/mol (3642.5217 without restraints) Performing minimization step: 2064. Total energy = 3647.1855 kcal/mol (3641.3399 without restraints) Performing minimization step: 2065. Total energy = 3646.0024 kcal/mol (3640.1596 without restraints) Performing minimization step: 2066. Total energy = 3644.8220 kcal/mol (3638.9819 without restraints) Performing minimization step: 2067. Total energy = 3643.6428 kcal/mol (3637.8057 without restraints) Performing minimization step: 2068. Total energy = 3642.4655 kcal/mol (3636.6313 without restraints) Performing minimization step: 2069. Total energy = 3641.2903 kcal/mol (3635.4589 without restraints) Performing minimization step: 2070. Total energy = 3640.1171 kcal/mol (3634.2885 without restraints) Performing minimization step: 2071. Total energy = 3638.9456 kcal/mol (3633.1199 without restraints) Performing minimization step: 2072. Total energy = 3637.7756 kcal/mol (3631.9529 without restraints) Performing minimization step: 2073. Total energy = 3636.6080 kcal/mol (3630.7879 without restraints) Performing minimization step: 2074. Total energy = 3635.4424 kcal/mol (3629.6252 without restraints) Performing minimization step: 2075. Total energy = 3634.2786 kcal/mol (3628.4643 without restraints) Performing minimization step: 2076. Total energy = 3633.1166 kcal/mol (3627.3051 without restraints) Performing minimization step: 2077. Total energy = 3631.9565 kcal/mol (3626.1478 without restraints) Performing minimization step: 2078. Total energy = 3630.7982 kcal/mol (3624.9924 without restraints) Performing minimization step: 2079. Total energy = 3629.6419 kcal/mol (3623.8389 without restraints) Performing minimization step: 2080. Total energy = 3628.4877 kcal/mol (3622.6875 without restraints) Performing minimization step: 2081. Total energy = 3627.3349 kcal/mol (3621.5375 without restraints) Performing minimization step: 2082. Total energy = 3626.1841 kcal/mol (3620.3897 without restraints) Performing minimization step: 2083. Total energy = 3625.0350 kcal/mol (3619.2432 without restraints) Performing minimization step: 2084. Total energy = 3623.8878 kcal/mol (3618.0990 without restraints) Performing minimization step: 2085. Total energy = 3622.7425 kcal/mol (3616.9565 without restraints) Performing minimization step: 2086. Total energy = 3621.5991 kcal/mol (3615.8160 without restraints) Performing minimization step: 2087. Total energy = 3620.4575 kcal/mol (3614.6771 without restraints) Performing minimization step: 2088. Total energy = 3619.3177 kcal/mol (3613.5402 without restraints) Performing minimization step: 2089. Total energy = 3618.1803 kcal/mol (3612.4058 without restraints) Performing minimization step: 2090. Total energy = 3617.0446 kcal/mol (3611.2728 without restraints) Performing minimization step: 2091. Total energy = 3615.9103 kcal/mol (3610.1414 without restraints) Performing minimization step: 2092. Total energy = 3614.7778 kcal/mol (3609.0117 without restraints) Performing minimization step: 2093. Total energy = 3613.6470 kcal/mol (3607.8837 without restraints) Performing minimization step: 2094. Total energy = 3612.5183 kcal/mol (3606.7578 without restraints) Performing minimization step: 2095. Total energy = 3611.3912 kcal/mol (3605.6336 without restraints) Performing minimization step: 2096. Total energy = 3610.2659 kcal/mol (3604.5111 without restraints) Performing minimization step: 2097. Total energy = 3609.1431 kcal/mol (3603.3912 without restraints) Performing minimization step: 2098. Total energy = 3608.0214 kcal/mol (3602.2723 without restraints) Performing minimization step: 2099. Total energy = 3606.9015 kcal/mol (3601.1553 without restraints) Performing minimization step: 2100. Total energy = 3605.7835 kcal/mol (3600.0400 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 3604.6669 kcal/mol (3598.9265 without restraints) Performing minimization step: 2102. Total energy = 3603.5530 kcal/mol (3597.8152 without restraints) Performing minimization step: 2103. Total energy = 3602.4401 kcal/mol (3596.7051 without restraints) Performing minimization step: 2104. Total energy = 3601.3292 kcal/mol (3595.5970 without restraints) Performing minimization step: 2105. Total energy = 3600.2200 kcal/mol (3594.4907 without restraints) Performing minimization step: 2106. Total energy = 3599.1126 kcal/mol (3593.3861 without restraints) Performing minimization step: 2107. Total energy = 3598.0075 kcal/mol (3592.2839 without restraints) Performing minimization step: 2108. Total energy = 3596.9037 kcal/mol (3591.1829 without restraints) Performing minimization step: 2109. Total energy = 3595.8020 kcal/mol (3590.0840 without restraints) Performing minimization step: 2110. Total energy = 3594.7014 kcal/mol (3588.9863 without restraints) Performing minimization step: 2111. Total energy = 3593.6028 kcal/mol (3587.8905 without restraints) Performing minimization step: 2112. Total energy = 3592.5060 kcal/mol (3586.7964 without restraints) Performing minimization step: 2113. Total energy = 3591.4114 kcal/mol (3585.7048 without restraints) Performing minimization step: 2114. Total energy = 3590.3177 kcal/mol (3584.6139 without restraints) Performing minimization step: 2115. Total energy = 3589.2258 kcal/mol (3583.5248 without restraints) Performing minimization step: 2116. Total energy = 3588.1357 kcal/mol (3582.4375 without restraints) Performing minimization step: 2117. Total energy = 3587.0477 kcal/mol (3581.3524 without restraints) Performing minimization step: 2118. Total energy = 3585.9610 kcal/mol (3580.2684 without restraints) Performing minimization step: 2119. Total energy = 3584.8762 kcal/mol (3579.1864 without restraints) Performing minimization step: 2120. Total energy = 3583.7930 kcal/mol (3578.1060 without restraints) Performing minimization step: 2121. Total energy = 3582.7113 kcal/mol (3577.0272 without restraints) Performing minimization step: 2122. Total energy = 3581.6316 kcal/mol (3575.9503 without restraints) Performing minimization step: 2123. Total energy = 3580.5539 kcal/mol (3574.8755 without restraints) Performing minimization step: 2124. Total energy = 3579.4770 kcal/mol (3573.8014 without restraints) Performing minimization step: 2125. Total energy = 3578.4024 kcal/mol (3572.7296 without restraints) Performing minimization step: 2126. Total energy = 3577.3294 kcal/mol (3571.6593 without restraints) Performing minimization step: 2127. Total energy = 3576.2581 kcal/mol (3570.5909 without restraints) Performing minimization step: 2128. Total energy = 3575.1889 kcal/mol (3569.5245 without restraints) Performing minimization step: 2129. Total energy = 3574.1209 kcal/mol (3568.4593 without restraints) Performing minimization step: 2130. Total energy = 3573.0546 kcal/mol (3567.3958 without restraints) Performing minimization step: 2131. Total energy = 3571.9895 kcal/mol (3566.3336 without restraints) Performing minimization step: 2132. Total energy = 3570.9260 kcal/mol (3565.2729 without restraints) Performing minimization step: 2133. Total energy = 3569.8647 kcal/mol (3564.2143 without restraints) Performing minimization step: 2134. Total energy = 3568.8050 kcal/mol (3563.1574 without restraints) Performing minimization step: 2135. Total energy = 3567.7470 kcal/mol (3562.1022 without restraints) Performing minimization step: 2136. Total energy = 3566.6904 kcal/mol (3561.0486 without restraints) Performing minimization step: 2137. Total energy = 3565.6362 kcal/mol (3559.9970 without restraints) Performing minimization step: 2138. Total energy = 3564.5834 kcal/mol (3558.9471 without restraints) Performing minimization step: 2139. Total energy = 3563.5319 kcal/mol (3557.8984 without restraints) Performing minimization step: 2140. Total energy = 3562.4820 kcal/mol (3556.8513 without restraints) Performing minimization step: 2141. Total energy = 3561.4338 kcal/mol (3555.8061 without restraints) Performing minimization step: 2142. Total energy = 3560.3872 kcal/mol (3554.7621 without restraints) Performing minimization step: 2143. Total energy = 3559.3426 kcal/mol (3553.7203 without restraints) Performing minimization step: 2144. Total energy = 3558.2998 kcal/mol (3552.6803 without restraints) Performing minimization step: 2145. Total energy = 3557.2583 kcal/mol (3551.6416 without restraints) Performing minimization step: 2146. Total energy = 3556.2183 kcal/mol (3550.6044 without restraints) Performing minimization step: 2147. Total energy = 3555.1798 kcal/mol (3549.5688 without restraints) Performing minimization step: 2148. Total energy = 3554.1431 kcal/mol (3548.5349 without restraints) Performing minimization step: 2149. Total energy = 3553.1079 kcal/mol (3547.5024 without restraints) Performing minimization step: 2150. Total energy = 3552.0742 kcal/mol (3546.4716 without restraints) Performing minimization step: 2151. Total energy = 3551.0421 kcal/mol (3545.4422 without restraints) Performing minimization step: 2152. Total energy = 3550.0113 kcal/mol (3544.4142 without restraints) Performing minimization step: 2153. Total energy = 3548.9825 kcal/mol (3543.3882 without restraints) Performing minimization step: 2154. Total energy = 3547.9550 kcal/mol (3542.3635 without restraints) Performing minimization step: 2155. Total energy = 3546.9291 kcal/mol (3541.3404 without restraints) Performing minimization step: 2156. Total energy = 3545.9046 kcal/mol (3540.3186 without restraints) Performing minimization step: 2157. Total energy = 3544.8820 kcal/mol (3539.2988 without restraints) Performing minimization step: 2158. Total energy = 3543.8606 kcal/mol (3538.2803 without restraints) Performing minimization step: 2159. Total energy = 3542.8406 kcal/mol (3537.2630 without restraints) Performing minimization step: 2160. Total energy = 3541.8224 kcal/mol (3536.2477 without restraints) Performing minimization step: 2161. Total energy = 3540.8060 kcal/mol (3535.2340 without restraints) Performing minimization step: 2162. Total energy = 3539.7908 kcal/mol (3534.2216 without restraints) Performing minimization step: 2163. Total energy = 3538.7775 kcal/mol (3533.2110 without restraints) Performing minimization step: 2164. Total energy = 3537.7657 kcal/mol (3532.2020 without restraints) Performing minimization step: 2165. Total energy = 3536.7555 kcal/mol (3531.1948 without restraints) Performing minimization step: 2166. Total energy = 3535.7467 kcal/mol (3530.1885 without restraints) Performing minimization step: 2167. Total energy = 3534.7393 kcal/mol (3529.1840 without restraints) Performing minimization step: 2168. Total energy = 3533.7330 kcal/mol (3528.1805 without restraints) Performing minimization step: 2169. Total energy = 3532.7288 kcal/mol (3527.1791 without restraints) Performing minimization step: 2170. Total energy = 3531.7263 kcal/mol (3526.1794 without restraints) Performing minimization step: 2171. Total energy = 3530.7253 kcal/mol (3525.1813 without restraints) Performing minimization step: 2172. Total energy = 3529.7258 kcal/mol (3524.1844 without restraints) Performing minimization step: 2173. Total energy = 3528.7279 kcal/mol (3523.1894 without restraints) Performing minimization step: 2174. Total energy = 3527.7312 kcal/mol (3522.1954 without restraints) Performing minimization step: 2175. Total energy = 3526.7363 kcal/mol (3521.2033 without restraints) Performing minimization step: 2176. Total energy = 3525.7429 kcal/mol (3520.2125 without restraints) Performing minimization step: 2177. Total energy = 3524.7508 kcal/mol (3519.2232 without restraints) Performing minimization step: 2178. Total energy = 3523.7599 kcal/mol (3518.2352 without restraints) Performing minimization step: 2179. Total energy = 3522.7707 kcal/mol (3517.2488 without restraints) Performing minimization step: 2180. Total energy = 3521.7828 kcal/mol (3516.2638 without restraints) Performing minimization step: 2181. Total energy = 3520.7968 kcal/mol (3515.2804 without restraints) Performing minimization step: 2182. Total energy = 3519.8124 kcal/mol (3514.2988 without restraints) Performing minimization step: 2183. Total energy = 3518.8292 kcal/mol (3513.3183 without restraints) Performing minimization step: 2184. Total energy = 3517.8476 kcal/mol (3512.3396 without restraints) Performing minimization step: 2185. Total energy = 3516.8675 kcal/mol (3511.3622 without restraints) Performing minimization step: 2186. Total energy = 3515.8883 kcal/mol (3510.3855 without restraints) Performing minimization step: 2187. Total energy = 3514.9114 kcal/mol (3509.4114 without restraints) Performing minimization step: 2188. Total energy = 3513.9357 kcal/mol (3508.4386 without restraints) Performing minimization step: 2189. Total energy = 3512.9608 kcal/mol (3507.4665 without restraints) Performing minimization step: 2190. Total energy = 3511.9877 kcal/mol (3506.4962 without restraints) Performing minimization step: 2191. Total energy = 3511.0164 kcal/mol (3505.5276 without restraints) Performing minimization step: 2192. Total energy = 3510.0466 kcal/mol (3504.5606 without restraints) Performing minimization step: 2193. Total energy = 3509.0780 kcal/mol (3503.5948 without restraints) Performing minimization step: 2194. Total energy = 3508.1107 kcal/mol (3502.6301 without restraints) Performing minimization step: 2195. Total energy = 3507.1449 kcal/mol (3501.6672 without restraints) Performing minimization step: 2196. Total energy = 3506.1806 kcal/mol (3500.7057 without restraints) Performing minimization step: 2197. Total energy = 3505.2176 kcal/mol (3499.7454 without restraints) Performing minimization step: 2198. Total energy = 3504.2565 kcal/mol (3498.7870 without restraints) Performing minimization step: 2199. Total energy = 3503.2963 kcal/mol (3497.8295 without restraints) Performing minimization step: 2200. Total energy = 3502.3377 kcal/mol (3496.8738 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 3501.3807 kcal/mol (3495.9195 without restraints) Performing minimization step: 2202. Total energy = 3500.4250 kcal/mol (3494.9666 without restraints) Performing minimization step: 2203. Total energy = 3499.4706 kcal/mol (3494.0148 without restraints) Performing minimization step: 2204. Total energy = 3498.5174 kcal/mol (3493.0644 without restraints) Performing minimization step: 2205. Total energy = 3497.5658 kcal/mol (3492.1156 without restraints) Performing minimization step: 2206. Total energy = 3496.6156 kcal/mol (3491.1681 without restraints) Performing minimization step: 2207. Total energy = 3495.6669 kcal/mol (3490.2222 without restraints) Performing minimization step: 2208. Total energy = 3494.7198 kcal/mol (3489.2778 without restraints) Performing minimization step: 2209. Total energy = 3493.7739 kcal/mol (3488.3347 without restraints) Performing minimization step: 2210. Total energy = 3492.8296 kcal/mol (3487.3931 without restraints) Performing minimization step: 2211. Total energy = 3491.8865 kcal/mol (3486.4528 without restraints) Performing minimization step: 2212. Total energy = 3490.9447 kcal/mol (3485.5138 without restraints) Performing minimization step: 2213. Total energy = 3490.0044 kcal/mol (3484.5762 without restraints) Performing minimization step: 2214. Total energy = 3489.0658 kcal/mol (3483.6403 without restraints) Performing minimization step: 2215. Total energy = 3488.1278 kcal/mol (3482.7051 without restraints) Performing minimization step: 2216. Total energy = 3487.1914 kcal/mol (3481.7715 without restraints) Performing minimization step: 2217. Total energy = 3486.2568 kcal/mol (3480.8395 without restraints) Performing minimization step: 2218. Total energy = 3485.3234 kcal/mol (3479.9088 without restraints) Performing minimization step: 2219. Total energy = 3484.3913 kcal/mol (3478.9795 without restraints) Performing minimization step: 2220. Total energy = 3483.4604 kcal/mol (3478.0514 without restraints) Performing minimization step: 2221. Total energy = 3482.5311 kcal/mol (3477.1248 without restraints) Performing minimization step: 2222. Total energy = 3481.6031 kcal/mol (3476.1995 without restraints) Performing minimization step: 2223. Total energy = 3480.6765 kcal/mol (3475.2755 without restraints) Performing minimization step: 2224. Total energy = 3479.7514 kcal/mol (3474.3531 without restraints) Performing minimization step: 2225. Total energy = 3478.8275 kcal/mol (3473.4320 without restraints) Performing minimization step: 2226. Total energy = 3477.9048 kcal/mol (3472.5120 without restraints) Performing minimization step: 2227. Total energy = 3476.9837 kcal/mol (3471.5937 without restraints) Performing minimization step: 2228. Total energy = 3476.0639 kcal/mol (3470.6767 without restraints) Performing minimization step: 2229. Total energy = 3475.1458 kcal/mol (3469.7613 without restraints) Performing minimization step: 2230. Total energy = 3474.2288 kcal/mol (3468.8471 without restraints) Performing minimization step: 2231. Total energy = 3473.3128 kcal/mol (3467.9337 without restraints) Performing minimization step: 2232. Total energy = 3472.3991 kcal/mol (3467.0227 without restraints) Performing minimization step: 2233. Total energy = 3471.4859 kcal/mol (3466.1122 without restraints) Performing minimization step: 2234. Total energy = 3470.5738 kcal/mol (3465.2029 without restraints) Performing minimization step: 2235. Total energy = 3469.6633 kcal/mol (3464.2951 without restraints) Performing minimization step: 2236. Total energy = 3468.7540 kcal/mol (3463.3886 without restraints) Performing minimization step: 2237. Total energy = 3467.8456 kcal/mol (3462.4828 without restraints) Performing minimization step: 2238. Total energy = 3466.9386 kcal/mol (3461.5785 without restraints) Performing minimization step: 2239. Total energy = 3466.0333 kcal/mol (3460.6760 without restraints) Performing minimization step: 2240. Total energy = 3465.1292 kcal/mol (3459.7745 without restraints) Performing minimization step: 2241. Total energy = 3464.2263 kcal/mol (3458.8744 without restraints) Performing minimization step: 2242. Total energy = 3463.3248 kcal/mol (3457.9758 without restraints) Performing minimization step: 2243. Total energy = 3462.4251 kcal/mol (3457.0786 without restraints) Performing minimization step: 2244. Total energy = 3461.5264 kcal/mol (3456.1826 without restraints) Performing minimization step: 2245. Total energy = 3460.6290 kcal/mol (3455.2879 without restraints) Performing minimization step: 2246. Total energy = 3459.7327 kcal/mol (3454.3943 without restraints) Performing minimization step: 2247. Total energy = 3458.8380 kcal/mol (3453.5023 without restraints) Performing minimization step: 2248. Total energy = 3457.9445 kcal/mol (3452.6115 without restraints) Performing minimization step: 2249. Total energy = 3457.0522 kcal/mol (3451.7220 without restraints) Performing minimization step: 2250. Total energy = 3456.1613 kcal/mol (3450.8338 without restraints) Performing minimization step: 2251. Total energy = 3455.2719 kcal/mol (3449.9471 without restraints) Performing minimization step: 2252. Total energy = 3454.3835 kcal/mol (3449.0614 without restraints) Performing minimization step: 2253. Total energy = 3453.4964 kcal/mol (3448.1770 without restraints) Performing minimization step: 2254. Total energy = 3452.6106 kcal/mol (3447.2939 without restraints) Performing minimization step: 2255. Total energy = 3451.7260 kcal/mol (3446.4119 without restraints) Performing minimization step: 2256. Total energy = 3450.8428 kcal/mol (3445.5315 without restraints) Performing minimization step: 2257. Total energy = 3449.9609 kcal/mol (3444.6523 without restraints) Performing minimization step: 2258. Total energy = 3449.0800 kcal/mol (3443.7741 without restraints) Performing minimization step: 2259. Total energy = 3448.2007 kcal/mol (3442.8974 without restraints) Performing minimization step: 2260. Total energy = 3447.3225 kcal/mol (3442.0219 without restraints) Performing minimization step: 2261. Total energy = 3446.4456 kcal/mol (3441.1477 without restraints) Performing minimization step: 2262. Total energy = 3445.5695 kcal/mol (3440.2743 without restraints) Performing minimization step: 2263. Total energy = 3444.6951 kcal/mol (3439.4026 without restraints) Performing minimization step: 2264. Total energy = 3443.8220 kcal/mol (3438.5321 without restraints) Performing minimization step: 2265. Total energy = 3442.9499 kcal/mol (3437.6628 without restraints) Performing minimization step: 2266. Total energy = 3442.0788 kcal/mol (3436.7944 without restraints) Performing minimization step: 2267. Total energy = 3441.2092 kcal/mol (3435.9274 without restraints) Performing minimization step: 2268. Total energy = 3440.3412 kcal/mol (3435.0622 without restraints) Performing minimization step: 2269. Total energy = 3439.4742 kcal/mol (3434.1978 without restraints) Performing minimization step: 2270. Total energy = 3438.6087 kcal/mol (3433.3350 without restraints) Performing minimization step: 2271. Total energy = 3437.7443 kcal/mol (3432.4733 without restraints) Performing minimization step: 2272. Total energy = 3436.8810 kcal/mol (3431.6126 without restraints) Performing minimization step: 2273. Total energy = 3436.0190 kcal/mol (3430.7533 without restraints) Performing minimization step: 2274. Total energy = 3435.1584 kcal/mol (3429.8954 without restraints) Performing minimization step: 2275. Total energy = 3434.2985 kcal/mol (3429.0382 without restraints) Performing minimization step: 2276. Total energy = 3433.4405 kcal/mol (3428.1829 without restraints) Performing minimization step: 2277. Total energy = 3432.5836 kcal/mol (3427.3286 without restraints) Performing minimization step: 2278. Total energy = 3431.7276 kcal/mol (3426.4753 without restraints) Performing minimization step: 2279. Total energy = 3430.8729 kcal/mol (3425.6232 without restraints) Performing minimization step: 2280. Total energy = 3430.0198 kcal/mol (3424.7728 without restraints) Performing minimization step: 2281. Total energy = 3429.1677 kcal/mol (3423.9233 without restraints) Performing minimization step: 2282. Total energy = 3428.3167 kcal/mol (3423.0750 without restraints) Performing minimization step: 2283. Total energy = 3427.4670 kcal/mol (3422.2280 without restraints) Performing minimization step: 2284. Total energy = 3426.6186 kcal/mol (3421.3822 without restraints) Performing minimization step: 2285. Total energy = 3425.7714 kcal/mol (3420.5376 without restraints) Performing minimization step: 2286. Total energy = 3424.9251 kcal/mol (3419.6941 without restraints) Performing minimization step: 2287. Total energy = 3424.0803 kcal/mol (3418.8520 without restraints) Performing minimization step: 2288. Total energy = 3423.2365 kcal/mol (3418.0109 without restraints) Performing minimization step: 2289. Total energy = 3422.3940 kcal/mol (3417.1708 without restraints) Performing minimization step: 2290. Total energy = 3421.5527 kcal/mol (3416.3324 without restraints) Performing minimization step: 2291. Total energy = 3420.7127 kcal/mol (3415.4950 without restraints) Performing minimization step: 2292. Total energy = 3419.8737 kcal/mol (3414.6586 without restraints) Performing minimization step: 2293. Total energy = 3419.0360 kcal/mol (3413.8235 without restraints) Performing minimization step: 2294. Total energy = 3418.1990 kcal/mol (3412.9893 without restraints) Performing minimization step: 2295. Total energy = 3417.3639 kcal/mol (3412.1568 without restraints) Performing minimization step: 2296. Total energy = 3416.5299 kcal/mol (3411.3255 without restraints) Performing minimization step: 2297. Total energy = 3415.6972 kcal/mol (3410.4954 without restraints) Performing minimization step: 2298. Total energy = 3414.8651 kcal/mol (3409.6660 without restraints) Performing minimization step: 2299. Total energy = 3414.0346 kcal/mol (3408.8380 without restraints) Performing minimization step: 2300. Total energy = 3413.2050 kcal/mol (3408.0112 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 3412.3772 kcal/mol (3407.1860 without restraints) Performing minimization step: 2302. Total energy = 3411.5502 kcal/mol (3406.3617 without restraints) Performing minimization step: 2303. Total energy = 3410.7244 kcal/mol (3405.5386 without restraints) Performing minimization step: 2304. Total energy = 3409.8999 kcal/mol (3404.7167 without restraints) Performing minimization step: 2305. Total energy = 3409.0764 kcal/mol (3403.8958 without restraints) Performing minimization step: 2306. Total energy = 3408.2539 kcal/mol (3403.0758 without restraints) Performing minimization step: 2307. Total energy = 3407.4325 kcal/mol (3402.2572 without restraints) Performing minimization step: 2308. Total energy = 3406.6129 kcal/mol (3401.4402 without restraints) Performing minimization step: 2309. Total energy = 3405.7941 kcal/mol (3400.6241 without restraints) Performing minimization step: 2310. Total energy = 3404.9762 kcal/mol (3399.8088 without restraints) Performing minimization step: 2311. Total energy = 3404.1598 kcal/mol (3398.9950 without restraints) Performing minimization step: 2312. Total energy = 3403.3445 kcal/mol (3398.1823 without restraints) Performing minimization step: 2313. Total energy = 3402.5307 kcal/mol (3397.3713 without restraints) Performing minimization step: 2314. Total energy = 3401.7180 kcal/mol (3396.5611 without restraints) Performing minimization step: 2315. Total energy = 3400.9064 kcal/mol (3395.7522 without restraints) Performing minimization step: 2316. Total energy = 3400.0961 kcal/mol (3394.9445 without restraints) Performing minimization step: 2317. Total energy = 3399.2869 kcal/mol (3394.1379 without restraints) Performing minimization step: 2318. Total energy = 3398.4785 kcal/mol (3393.3322 without restraints) Performing minimization step: 2319. Total energy = 3397.6717 kcal/mol (3392.5280 without restraints) Performing minimization step: 2320. Total energy = 3396.8655 kcal/mol (3391.7243 without restraints) Performing minimization step: 2321. Total energy = 3396.0607 kcal/mol (3390.9222 without restraints) Performing minimization step: 2322. Total energy = 3395.2574 kcal/mol (3390.1217 without restraints) Performing minimization step: 2323. Total energy = 3394.4548 kcal/mol (3389.3216 without restraints) Performing minimization step: 2324. Total energy = 3393.6536 kcal/mol (3388.5230 without restraints) Performing minimization step: 2325. Total energy = 3392.8536 kcal/mol (3387.7256 without restraints) Performing minimization step: 2326. Total energy = 3392.0549 kcal/mol (3386.9295 without restraints) Performing minimization step: 2327. Total energy = 3391.2571 kcal/mol (3386.1344 without restraints) Performing minimization step: 2328. Total energy = 3390.4605 kcal/mol (3385.3403 without restraints) Performing minimization step: 2329. Total energy = 3389.6652 kcal/mol (3384.5476 without restraints) Performing minimization step: 2330. Total energy = 3388.8707 kcal/mol (3383.7557 without restraints) Performing minimization step: 2331. Total energy = 3388.0777 kcal/mol (3382.9654 without restraints) Performing minimization step: 2332. Total energy = 3387.2864 kcal/mol (3382.1767 without restraints) Performing minimization step: 2333. Total energy = 3386.4952 kcal/mol (3381.3880 without restraints) Performing minimization step: 2334. Total energy = 3385.7056 kcal/mol (3380.6015 without restraints) Performing minimization step: 2335. Total energy = 3384.9176 kcal/mol (3379.8158 without restraints) Performing minimization step: 2336. Total energy = 3384.1307 kcal/mol (3379.0317 without restraints) Performing minimization step: 2337. Total energy = 3383.3445 kcal/mol (3378.2479 without restraints) Performing minimization step: 2338. Total energy = 3382.5591 kcal/mol (3377.4650 without restraints) Performing minimization step: 2339. Total energy = 3381.7747 kcal/mol (3376.6833 without restraints) Performing minimization step: 2340. Total energy = 3380.9918 kcal/mol (3375.9030 without restraints) Performing minimization step: 2341. Total energy = 3380.2103 kcal/mol (3375.1243 without restraints) Performing minimization step: 2342. Total energy = 3379.4301 kcal/mol (3374.3465 without restraints) Performing minimization step: 2343. Total energy = 3378.6507 kcal/mol (3373.5697 without restraints) Performing minimization step: 2344. Total energy = 3377.8722 kcal/mol (3372.7938 without restraints) Performing minimization step: 2345. Total energy = 3377.0953 kcal/mol (3372.0195 without restraints) Performing minimization step: 2346. Total energy = 3376.3194 kcal/mol (3371.2462 without restraints) Performing minimization step: 2347. Total energy = 3375.5446 kcal/mol (3370.4739 without restraints) Performing minimization step: 2348. Total energy = 3374.7707 kcal/mol (3369.7026 without restraints) Performing minimization step: 2349. Total energy = 3373.9979 kcal/mol (3368.9322 without restraints) Performing minimization step: 2350. Total energy = 3373.2260 kcal/mol (3368.1632 without restraints) Performing minimization step: 2351. Total energy = 3372.4552 kcal/mol (3367.3949 without restraints) Performing minimization step: 2352. Total energy = 3371.6857 kcal/mol (3366.6280 without restraints) Performing minimization step: 2353. Total energy = 3370.9173 kcal/mol (3365.8622 without restraints) Performing minimization step: 2354. Total energy = 3370.1498 kcal/mol (3365.0971 without restraints) Performing minimization step: 2355. Total energy = 3369.3835 kcal/mol (3364.3335 without restraints) Performing minimization step: 2356. Total energy = 3368.6185 kcal/mol (3363.5712 without restraints) Performing minimization step: 2357. Total energy = 3367.8550 kcal/mol (3362.8102 without restraints) Performing minimization step: 2358. Total energy = 3367.0926 kcal/mol (3362.0504 without restraints) Performing minimization step: 2359. Total energy = 3366.3305 kcal/mol (3361.2909 without restraints) Performing minimization step: 2360. Total energy = 3365.5699 kcal/mol (3360.5328 without restraints) Performing minimization step: 2361. Total energy = 3364.8104 kcal/mol (3359.7759 without restraints) Performing minimization step: 2362. Total energy = 3364.0514 kcal/mol (3359.0196 without restraints) Performing minimization step: 2363. Total energy = 3363.2939 kcal/mol (3358.2646 without restraints) Performing minimization step: 2364. Total energy = 3362.5378 kcal/mol (3357.5109 without restraints) Performing minimization step: 2365. Total energy = 3361.7827 kcal/mol (3356.7585 without restraints) Performing minimization step: 2366. Total energy = 3361.0284 kcal/mol (3356.0067 without restraints) Performing minimization step: 2367. Total energy = 3360.2754 kcal/mol (3355.2564 without restraints) Performing minimization step: 2368. Total energy = 3359.5236 kcal/mol (3354.5071 without restraints) Performing minimization step: 2369. Total energy = 3358.7728 kcal/mol (3353.7589 without restraints) Performing minimization step: 2370. Total energy = 3358.0230 kcal/mol (3353.0117 without restraints) Performing minimization step: 2371. Total energy = 3357.2747 kcal/mol (3352.2659 without restraints) Performing minimization step: 2372. Total energy = 3356.5273 kcal/mol (3351.5211 without restraints) Performing minimization step: 2373. Total energy = 3355.7807 kcal/mol (3350.7770 without restraints) Performing minimization step: 2374. Total energy = 3355.0353 kcal/mol (3350.0342 without restraints) Performing minimization step: 2375. Total energy = 3354.2913 kcal/mol (3349.2928 without restraints) Performing minimization step: 2376. Total energy = 3353.5484 kcal/mol (3348.5526 without restraints) Performing minimization step: 2377. Total energy = 3352.8064 kcal/mol (3347.8130 without restraints) Performing minimization step: 2378. Total energy = 3352.0647 kcal/mol (3347.0739 without restraints) Performing minimization step: 2379. Total energy = 3351.3251 kcal/mol (3346.3370 without restraints) Performing minimization step: 2380. Total energy = 3350.5865 kcal/mol (3345.6008 without restraints) Performing minimization step: 2381. Total energy = 3349.8485 kcal/mol (3344.8652 without restraints) Performing minimization step: 2382. Total energy = 3349.1120 kcal/mol (3344.1314 without restraints) Performing minimization step: 2383. Total energy = 3348.3766 kcal/mol (3343.3985 without restraints) Performing minimization step: 2384. Total energy = 3347.6422 kcal/mol (3342.6666 without restraints) Performing minimization step: 2385. Total energy = 3346.9084 kcal/mol (3341.9354 without restraints) Performing minimization step: 2386. Total energy = 3346.1755 kcal/mol (3341.2047 without restraints) Performing minimization step: 2387. Total energy = 3345.4440 kcal/mol (3340.4761 without restraints) Performing minimization step: 2388. Total energy = 3344.7137 kcal/mol (3339.7483 without restraints) Performing minimization step: 2389. Total energy = 3343.9845 kcal/mol (3339.0217 without restraints) Performing minimization step: 2390. Total energy = 3343.2565 kcal/mol (3338.2962 without restraints) Performing minimization step: 2391. Total energy = 3342.5296 kcal/mol (3337.5720 without restraints) Performing minimization step: 2392. Total energy = 3341.8035 kcal/mol (3336.8482 without restraints) Performing minimization step: 2393. Total energy = 3341.0783 kcal/mol (3336.1257 without restraints) Performing minimization step: 2394. Total energy = 3340.3545 kcal/mol (3335.4044 without restraints) Performing minimization step: 2395. Total energy = 3339.6312 kcal/mol (3334.6837 without restraints) Performing minimization step: 2396. Total energy = 3338.9094 kcal/mol (3333.9643 without restraints) Performing minimization step: 2397. Total energy = 3338.1887 kcal/mol (3333.2462 without restraints) Performing minimization step: 2398. Total energy = 3337.4692 kcal/mol (3332.5292 without restraints) Performing minimization step: 2399. Total energy = 3336.7509 kcal/mol (3331.8135 without restraints) Performing minimization step: 2400. Total energy = 3336.0331 kcal/mol (3331.0982 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 3335.3166 kcal/mol (3330.3843 without restraints) Performing minimization step: 2402. Total energy = 3334.6013 kcal/mol (3329.6714 without restraints) Performing minimization step: 2403. Total energy = 3333.8872 kcal/mol (3328.9599 without restraints) Performing minimization step: 2404. Total energy = 3333.1741 kcal/mol (3328.2495 without restraints) Performing minimization step: 2405. Total energy = 3332.4620 kcal/mol (3327.5397 without restraints) Performing minimization step: 2406. Total energy = 3331.7504 kcal/mol (3326.8306 without restraints) Performing minimization step: 2407. Total energy = 3331.0403 kcal/mol (3326.1230 without restraints) Performing minimization step: 2408. Total energy = 3330.3310 kcal/mol (3325.4163 without restraints) Performing minimization step: 2409. Total energy = 3329.6229 kcal/mol (3324.7107 without restraints) Performing minimization step: 2410. Total energy = 3328.9161 kcal/mol (3324.0063 without restraints) Performing minimization step: 2411. Total energy = 3328.2104 kcal/mol (3323.3033 without restraints) Performing minimization step: 2412. Total energy = 3327.5056 kcal/mol (3322.6010 without restraints) Performing minimization step: 2413. Total energy = 3326.8021 kcal/mol (3321.9001 without restraints) Performing minimization step: 2414. Total energy = 3326.0993 kcal/mol (3321.1997 without restraints) Performing minimization step: 2415. Total energy = 3325.3974 kcal/mol (3320.5003 without restraints) Performing minimization step: 2416. Total energy = 3324.6968 kcal/mol (3319.8022 without restraints) Performing minimization step: 2417. Total energy = 3323.9975 kcal/mol (3319.1054 without restraints) Performing minimization step: 2418. Total energy = 3323.2989 kcal/mol (3318.4095 without restraints) Performing minimization step: 2419. Total energy = 3322.6015 kcal/mol (3317.7145 without restraints) Performing minimization step: 2420. Total energy = 3321.9052 kcal/mol (3317.0207 without restraints) Performing minimization step: 2421. Total energy = 3321.2102 kcal/mol (3316.3283 without restraints) Performing minimization step: 2422. Total energy = 3320.5159 kcal/mol (3315.6364 without restraints) Performing minimization step: 2423. Total energy = 3319.8225 kcal/mol (3314.9455 without restraints) Performing minimization step: 2424. Total energy = 3319.1300 kcal/mol (3314.2554 without restraints) Performing minimization step: 2425. Total energy = 3318.4386 kcal/mol (3313.5667 without restraints) Performing minimization step: 2426. Total energy = 3317.7485 kcal/mol (3312.8790 without restraints) Performing minimization step: 2427. Total energy = 3317.0592 kcal/mol (3312.1921 without restraints) Performing minimization step: 2428. Total energy = 3316.3710 kcal/mol (3311.5064 without restraints) Performing minimization step: 2429. Total energy = 3315.6835 kcal/mol (3310.8216 without restraints) Performing minimization step: 2430. Total energy = 3314.9976 kcal/mol (3310.1381 without restraints) Performing minimization step: 2431. Total energy = 3314.3126 kcal/mol (3309.4555 without restraints) Performing minimization step: 2432. Total energy = 3313.6285 kcal/mol (3308.7739 without restraints) Performing minimization step: 2433. Total energy = 3312.9454 kcal/mol (3308.0933 without restraints) Performing minimization step: 2434. Total energy = 3312.2636 kcal/mol (3307.4140 without restraints) Performing minimization step: 2435. Total energy = 3311.5824 kcal/mol (3306.7353 without restraints) Performing minimization step: 2436. Total energy = 3310.9023 kcal/mol (3306.0576 without restraints) Performing minimization step: 2437. Total energy = 3310.2234 kcal/mol (3305.3813 without restraints) Performing minimization step: 2438. Total energy = 3309.5455 kcal/mol (3304.7057 without restraints) Performing minimization step: 2439. Total energy = 3308.8681 kcal/mol (3304.0310 without restraints) Performing minimization step: 2440. Total energy = 3308.1922 kcal/mol (3303.3576 without restraints) Performing minimization step: 2441. Total energy = 3307.5174 kcal/mol (3302.6853 without restraints) Performing minimization step: 2442. Total energy = 3306.8435 kcal/mol (3302.0139 without restraints) Performing minimization step: 2443. Total energy = 3306.1705 kcal/mol (3301.3432 without restraints) Performing minimization step: 2444. Total energy = 3305.4988 kcal/mol (3300.6742 without restraints) Performing minimization step: 2445. Total energy = 3304.8283 kcal/mol (3300.0060 without restraints) Performing minimization step: 2446. Total energy = 3304.1580 kcal/mol (3299.3382 without restraints) Performing minimization step: 2447. Total energy = 3303.4894 kcal/mol (3298.6721 without restraints) Performing minimization step: 2448. Total energy = 3302.8215 kcal/mol (3298.0067 without restraints) Performing minimization step: 2449. Total energy = 3302.1547 kcal/mol (3297.3423 without restraints) Performing minimization step: 2450. Total energy = 3301.4889 kcal/mol (3296.6790 without restraints) Performing minimization step: 2451. Total energy = 3300.8241 kcal/mol (3296.0166 without restraints) Performing minimization step: 2452. Total energy = 3300.1600 kcal/mol (3295.3551 without restraints) Performing minimization step: 2453. Total energy = 3299.4973 kcal/mol (3294.6949 without restraints) Performing minimization step: 2454. Total energy = 3298.8355 kcal/mol (3294.0354 without restraints) Performing minimization step: 2455. Total energy = 3298.1747 kcal/mol (3293.3772 without restraints) Performing minimization step: 2456. Total energy = 3297.5149 kcal/mol (3292.7198 without restraints) Performing minimization step: 2457. Total energy = 3296.8559 kcal/mol (3292.0631 without restraints) Performing minimization step: 2458. Total energy = 3296.1979 kcal/mol (3291.4077 without restraints) Performing minimization step: 2459. Total energy = 3295.5409 kcal/mol (3290.7531 without restraints) Performing minimization step: 2460. Total energy = 3294.8848 kcal/mol (3290.0995 without restraints) Performing minimization step: 2461. Total energy = 3294.2298 kcal/mol (3289.4470 without restraints) Performing minimization step: 2462. Total energy = 3293.5759 kcal/mol (3288.7955 without restraints) Performing minimization step: 2463. Total energy = 3292.9229 kcal/mol (3288.1450 without restraints) Performing minimization step: 2464. Total energy = 3292.2710 kcal/mol (3287.4955 without restraints) Performing minimization step: 2465. Total energy = 3291.6201 kcal/mol (3286.8471 without restraints) Performing minimization step: 2466. Total energy = 3290.9702 kcal/mol (3286.1996 without restraints) Performing minimization step: 2467. Total energy = 3290.3211 kcal/mol (3285.5529 without restraints) Performing minimization step: 2468. Total energy = 3289.6731 kcal/mol (3284.9074 without restraints) Performing minimization step: 2469. Total energy = 3289.0265 kcal/mol (3284.2632 without restraints) Performing minimization step: 2470. Total energy = 3288.3804 kcal/mol (3283.6197 without restraints) Performing minimization step: 2471. Total energy = 3287.7357 kcal/mol (3282.9775 without restraints) Performing minimization step: 2472. Total energy = 3287.0919 kcal/mol (3282.3360 without restraints) Performing minimization step: 2473. Total energy = 3286.4490 kcal/mol (3281.6955 without restraints) Performing minimization step: 2474. Total energy = 3285.8068 kcal/mol (3281.0557 without restraints) Performing minimization step: 2475. Total energy = 3285.1653 kcal/mol (3280.4167 without restraints) Performing minimization step: 2476. Total energy = 3284.5252 kcal/mol (3279.7790 without restraints) Performing minimization step: 2477. Total energy = 3283.8859 kcal/mol (3279.1422 without restraints) Performing minimization step: 2478. Total energy = 3283.2479 kcal/mol (3278.5066 without restraints) Performing minimization step: 2479. Total energy = 3282.6108 kcal/mol (3277.8720 without restraints) Performing minimization step: 2480. Total energy = 3281.9744 kcal/mol (3277.2380 without restraints) Performing minimization step: 2481. Total energy = 3281.3393 kcal/mol (3276.6052 without restraints) Performing minimization step: 2482. Total energy = 3280.7046 kcal/mol (3275.9731 without restraints) Performing minimization step: 2483. Total energy = 3280.0713 kcal/mol (3275.3421 without restraints) Performing minimization step: 2484. Total energy = 3279.4385 kcal/mol (3274.7117 without restraints) Performing minimization step: 2485. Total energy = 3278.8076 kcal/mol (3274.0833 without restraints) Performing minimization step: 2486. Total energy = 3278.1772 kcal/mol (3273.4552 without restraints) Performing minimization step: 2487. Total energy = 3277.5476 kcal/mol (3272.8281 without restraints) Performing minimization step: 2488. Total energy = 3276.9191 kcal/mol (3272.2019 without restraints) Performing minimization step: 2489. Total energy = 3276.2913 kcal/mol (3271.5767 without restraints) Performing minimization step: 2490. Total energy = 3275.6643 kcal/mol (3270.9521 without restraints) Performing minimization step: 2491. Total energy = 3275.0386 kcal/mol (3270.3288 without restraints) Performing minimization step: 2492. Total energy = 3274.4136 kcal/mol (3269.7062 without restraints) Performing minimization step: 2493. Total energy = 3273.7900 kcal/mol (3269.0850 without restraints) Performing minimization step: 2494. Total energy = 3273.1666 kcal/mol (3268.4639 without restraints) Performing minimization step: 2495. Total energy = 3272.5445 kcal/mol (3267.8444 without restraints) Performing minimization step: 2496. Total energy = 3271.9239 kcal/mol (3267.2262 without restraints) Performing minimization step: 2497. Total energy = 3271.3039 kcal/mol (3266.6086 without restraints) Performing minimization step: 2498. Total energy = 3270.6848 kcal/mol (3265.9919 without restraints) Performing minimization step: 2499. Total energy = 3270.0668 kcal/mol (3265.3762 without restraints) Performing minimization step: 2500. Total energy = 3269.4499 kcal/mol (3264.7617 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 3268.8333 kcal/mol (3264.1474 without restraints) Performing minimization step: 2502. Total energy = 3268.2177 kcal/mol (3263.5344 without restraints) Performing minimization step: 2503. Total energy = 3267.6026 kcal/mol (3262.9216 without restraints) Performing minimization step: 2504. Total energy = 3266.9890 kcal/mol (3262.3105 without restraints) Performing minimization step: 2505. Total energy = 3266.3765 kcal/mol (3261.7004 without restraints) Performing minimization step: 2506. Total energy = 3265.7652 kcal/mol (3261.0914 without restraints) Performing minimization step: 2507. Total energy = 3265.1546 kcal/mol (3260.4834 without restraints) Performing minimization step: 2508. Total energy = 3264.5454 kcal/mol (3259.8765 without restraints) Performing minimization step: 2509. Total energy = 3263.9364 kcal/mol (3259.2699 without restraints) Performing minimization step: 2510. Total energy = 3263.3284 kcal/mol (3258.6642 without restraints) Performing minimization step: 2511. Total energy = 3262.7219 kcal/mol (3258.0601 without restraints) Performing minimization step: 2512. Total energy = 3262.1160 kcal/mol (3257.4567 without restraints) Performing minimization step: 2513. Total energy = 3261.5112 kcal/mol (3256.8542 without restraints) Performing minimization step: 2514. Total energy = 3260.9070 kcal/mol (3256.2525 without restraints) Performing minimization step: 2515. Total energy = 3260.3042 kcal/mol (3255.6520 without restraints) Performing minimization step: 2516. Total energy = 3259.7018 kcal/mol (3255.0519 without restraints) Performing minimization step: 2517. Total energy = 3259.1004 kcal/mol (3254.4530 without restraints) Performing minimization step: 2518. Total energy = 3258.4997 kcal/mol (3253.8546 without restraints) Performing minimization step: 2519. Total energy = 3257.9002 kcal/mol (3253.2575 without restraints) Performing minimization step: 2520. Total energy = 3257.3010 kcal/mol (3252.6607 without restraints) Performing minimization step: 2521. Total energy = 3256.7035 kcal/mol (3252.0655 without restraints) Performing minimization step: 2522. Total energy = 3256.1064 kcal/mol (3251.4708 without restraints) Performing minimization step: 2523. Total energy = 3255.5099 kcal/mol (3250.8768 without restraints) Performing minimization step: 2524. Total energy = 3254.9149 kcal/mol (3250.2840 without restraints) Performing minimization step: 2525. Total energy = 3254.3204 kcal/mol (3249.6916 without restraints) Performing minimization step: 2526. Total energy = 3253.7265 kcal/mol (3249.1001 without restraints) Performing minimization step: 2527. Total energy = 3253.1344 kcal/mol (3248.5106 without restraints) Performing minimization step: 2528. Total energy = 3252.5425 kcal/mol (3247.9211 without restraints) Performing minimization step: 2529. Total energy = 3251.9522 kcal/mol (3247.3331 without restraints) Performing minimization step: 2530. Total energy = 3251.3623 kcal/mol (3246.7456 without restraints) Performing minimization step: 2531. Total energy = 3250.7733 kcal/mol (3246.1588 without restraints) Performing minimization step: 2532. Total energy = 3250.1854 kcal/mol (3245.5734 without restraints) Performing minimization step: 2533. Total energy = 3249.5984 kcal/mol (3244.9887 without restraints) Performing minimization step: 2534. Total energy = 3249.0118 kcal/mol (3244.4045 without restraints) Performing minimization step: 2535. Total energy = 3248.4267 kcal/mol (3243.8218 without restraints) Performing minimization step: 2536. Total energy = 3247.8424 kcal/mol (3243.2398 without restraints) Performing minimization step: 2537. Total energy = 3247.2587 kcal/mol (3242.6584 without restraints) Performing minimization step: 2538. Total energy = 3246.6762 kcal/mol (3242.0783 without restraints) Performing minimization step: 2539. Total energy = 3246.0946 kcal/mol (3241.4990 without restraints) Performing minimization step: 2540. Total energy = 3245.5142 kcal/mol (3240.9210 without restraints) Performing minimization step: 2541. Total energy = 3244.9342 kcal/mol (3240.3433 without restraints) Performing minimization step: 2542. Total energy = 3244.3548 kcal/mol (3239.7663 without restraints) Performing minimization step: 2543. Total energy = 3243.7765 kcal/mol (3239.1903 without restraints) Performing minimization step: 2544. Total energy = 3243.1993 kcal/mol (3238.6154 without restraints) Performing minimization step: 2545. Total energy = 3242.6232 kcal/mol (3238.0417 without restraints) Performing minimization step: 2546. Total energy = 3242.0476 kcal/mol (3237.4685 without restraints) Performing minimization step: 2547. Total energy = 3241.4730 kcal/mol (3236.8962 without restraints) Performing minimization step: 2548. Total energy = 3240.8994 kcal/mol (3236.3249 without restraints) Performing minimization step: 2549. Total energy = 3240.3264 kcal/mol (3235.7541 without restraints) Performing minimization step: 2550. Total energy = 3239.7543 kcal/mol (3235.1844 without restraints) Performing minimization step: 2551. Total energy = 3239.1831 kcal/mol (3234.6156 without restraints) Performing minimization step: 2552. Total energy = 3238.6128 kcal/mol (3234.0476 without restraints) Performing minimization step: 2553. Total energy = 3238.0432 kcal/mol (3233.4805 without restraints) Performing minimization step: 2554. Total energy = 3237.4748 kcal/mol (3232.9143 without restraints) Performing minimization step: 2555. Total energy = 3236.9074 kcal/mol (3232.3491 without restraints) Performing minimization step: 2556. Total energy = 3236.3405 kcal/mol (3231.7846 without restraints) Performing minimization step: 2557. Total energy = 3235.7745 kcal/mol (3231.2210 without restraints) Performing minimization step: 2558. Total energy = 3235.2094 kcal/mol (3230.6581 without restraints) Performing minimization step: 2559. Total energy = 3234.6451 kcal/mol (3230.0962 without restraints) Performing minimization step: 2560. Total energy = 3234.0817 kcal/mol (3229.5351 without restraints) Performing minimization step: 2561. Total energy = 3233.5192 kcal/mol (3228.9748 without restraints) Performing minimization step: 2562. Total energy = 3232.9577 kcal/mol (3228.4157 without restraints) Performing minimization step: 2563. Total energy = 3232.3968 kcal/mol (3227.8570 without restraints) Performing minimization step: 2564. Total energy = 3231.8368 kcal/mol (3227.2993 without restraints) Performing minimization step: 2565. Total energy = 3231.2776 kcal/mol (3226.7425 without restraints) Performing minimization step: 2566. Total energy = 3230.7193 kcal/mol (3226.1866 without restraints) Performing minimization step: 2567. Total energy = 3230.1617 kcal/mol (3225.6312 without restraints) Performing minimization step: 2568. Total energy = 3229.6050 kcal/mol (3225.0767 without restraints) Performing minimization step: 2569. Total energy = 3229.0489 kcal/mol (3224.5230 without restraints) Performing minimization step: 2570. Total energy = 3228.4941 kcal/mol (3223.9706 without restraints) Performing minimization step: 2571. Total energy = 3227.9401 kcal/mol (3223.4188 without restraints) Performing minimization step: 2572. Total energy = 3227.3870 kcal/mol (3222.8680 without restraints) Performing minimization step: 2573. Total energy = 3226.8344 kcal/mol (3222.3176 without restraints) Performing minimization step: 2574. Total energy = 3226.2826 kcal/mol (3221.7681 without restraints) Performing minimization step: 2575. Total energy = 3225.7317 kcal/mol (3221.2195 without restraints) Performing minimization step: 2576. Total energy = 3225.1814 kcal/mol (3220.6716 without restraints) Performing minimization step: 2577. Total energy = 3224.6320 kcal/mol (3220.1244 without restraints) Performing minimization step: 2578. Total energy = 3224.0838 kcal/mol (3219.5786 without restraints) Performing minimization step: 2579. Total energy = 3223.5364 kcal/mol (3219.0335 without restraints) Performing minimization step: 2580. Total energy = 3222.9895 kcal/mol (3218.4885 without restraints) Performing minimization step: 2581. Total energy = 3222.4432 kcal/mol (3217.9448 without restraints) Performing minimization step: 2582. Total energy = 3221.8977 kcal/mol (3217.4015 without restraints) Performing minimization step: 2583. Total energy = 3221.3531 kcal/mol (3216.8591 without restraints) Performing minimization step: 2584. Total energy = 3220.8094 kcal/mol (3216.3177 without restraints) Performing minimization step: 2585. Total energy = 3220.2665 kcal/mol (3215.7770 without restraints) Performing minimization step: 2586. Total energy = 3219.7245 kcal/mol (3215.2374 without restraints) Performing minimization step: 2587. Total energy = 3219.1826 kcal/mol (3214.6978 without restraints) Performing minimization step: 2588. Total energy = 3218.6424 kcal/mol (3214.1598 without restraints) Performing minimization step: 2589. Total energy = 3218.1027 kcal/mol (3213.6224 without restraints) Performing minimization step: 2590. Total energy = 3217.5641 kcal/mol (3213.0861 without restraints) Performing minimization step: 2591. Total energy = 3217.0270 kcal/mol (3212.5513 without restraints) Performing minimization step: 2592. Total energy = 3216.4902 kcal/mol (3212.0167 without restraints) Performing minimization step: 2593. Total energy = 3215.9540 kcal/mol (3211.4828 without restraints) Performing minimization step: 2594. Total energy = 3215.4188 kcal/mol (3210.9499 without restraints) Performing minimization step: 2595. Total energy = 3214.8849 kcal/mol (3210.4182 without restraints) Performing minimization step: 2596. Total energy = 3214.3515 kcal/mol (3209.8870 without restraints) Performing minimization step: 2597. Total energy = 3213.8188 kcal/mol (3209.3565 without restraints) Performing minimization step: 2598. Total energy = 3213.2867 kcal/mol (3208.8267 without restraints) Performing minimization step: 2599. Total energy = 3212.7550 kcal/mol (3208.2972 without restraints) Performing minimization step: 2600. Total energy = 3212.2242 kcal/mol (3207.7686 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 3211.6941 kcal/mol (3207.2409 without restraints) Performing minimization step: 2602. Total energy = 3211.1651 kcal/mol (3206.7141 without restraints) Performing minimization step: 2603. Total energy = 3210.6361 kcal/mol (3206.1874 without restraints) Performing minimization step: 2604. Total energy = 3210.1082 kcal/mol (3205.6617 without restraints) Performing minimization step: 2605. Total energy = 3209.5813 kcal/mol (3205.1370 without restraints) Performing minimization step: 2606. Total energy = 3209.0549 kcal/mol (3204.6129 without restraints) Performing minimization step: 2607. Total energy = 3208.5298 kcal/mol (3204.0899 without restraints) Performing minimization step: 2608. Total energy = 3208.0051 kcal/mol (3203.5675 without restraints) Performing minimization step: 2609. Total energy = 3207.4816 kcal/mol (3203.0464 without restraints) Performing minimization step: 2610. Total energy = 3206.9586 kcal/mol (3202.5257 without restraints) Performing minimization step: 2611. Total energy = 3206.4366 kcal/mol (3202.0057 without restraints) Performing minimization step: 2612. Total energy = 3205.9156 kcal/mol (3201.4869 without restraints) Performing minimization step: 2613. Total energy = 3205.3950 kcal/mol (3200.9688 without restraints) Performing minimization step: 2614. Total energy = 3204.8751 kcal/mol (3200.4509 without restraints) Performing minimization step: 2615. Total energy = 3204.3556 kcal/mol (3199.9336 without restraints) Performing minimization step: 2616. Total energy = 3203.8371 kcal/mol (3199.4173 without restraints) Performing minimization step: 2617. Total energy = 3203.3195 kcal/mol (3198.9020 without restraints) Performing minimization step: 2618. Total energy = 3202.8027 kcal/mol (3198.3874 without restraints) Performing minimization step: 2619. Total energy = 3202.2869 kcal/mol (3197.8737 without restraints) Performing minimization step: 2620. Total energy = 3201.7715 kcal/mol (3197.3606 without restraints) Performing minimization step: 2621. Total energy = 3201.2568 kcal/mol (3196.8480 without restraints) Performing minimization step: 2622. Total energy = 3200.7428 kcal/mol (3196.3362 without restraints) Performing minimization step: 2623. Total energy = 3200.2299 kcal/mol (3195.8257 without restraints) Performing minimization step: 2624. Total energy = 3199.7176 kcal/mol (3195.3155 without restraints) Performing minimization step: 2625. Total energy = 3199.2063 kcal/mol (3194.8064 without restraints) Performing minimization step: 2626. Total energy = 3198.6956 kcal/mol (3194.2979 without restraints) Performing minimization step: 2627. Total energy = 3198.1858 kcal/mol (3193.7904 without restraints) Performing minimization step: 2628. Total energy = 3197.6765 kcal/mol (3193.2830 without restraints) Performing minimization step: 2629. Total energy = 3197.1677 kcal/mol (3192.7766 without restraints) Performing minimization step: 2630. Total energy = 3196.6600 kcal/mol (3192.2710 without restraints) Performing minimization step: 2631. Total energy = 3196.1530 kcal/mol (3191.7663 without restraints) Performing minimization step: 2632. Total energy = 3195.6465 kcal/mol (3191.2619 without restraints) Performing minimization step: 2633. Total energy = 3195.1410 kcal/mol (3190.7586 without restraints) Performing minimization step: 2634. Total energy = 3194.6362 kcal/mol (3190.2560 without restraints) Performing minimization step: 2635. Total energy = 3194.1315 kcal/mol (3189.7535 without restraints) Performing minimization step: 2636. Total energy = 3193.6277 kcal/mol (3189.2519 without restraints) Performing minimization step: 2637. Total energy = 3193.1249 kcal/mol (3188.7513 without restraints) Performing minimization step: 2638. Total energy = 3192.6228 kcal/mol (3188.2513 without restraints) Performing minimization step: 2639. Total energy = 3192.1213 kcal/mol (3187.7519 without restraints) Performing minimization step: 2640. Total energy = 3191.6204 kcal/mol (3187.2533 without restraints) Performing minimization step: 2641. Total energy = 3191.1209 kcal/mol (3186.7560 without restraints) Performing minimization step: 2642. Total energy = 3190.6215 kcal/mol (3186.2588 without restraints) Performing minimization step: 2643. Total energy = 3190.1233 kcal/mol (3185.7627 without restraints) Performing minimization step: 2644. Total energy = 3189.6255 kcal/mol (3185.2671 without restraints) Performing minimization step: 2645. Total energy = 3189.1281 kcal/mol (3184.7718 without restraints) Performing minimization step: 2646. Total energy = 3188.6318 kcal/mol (3184.2776 without restraints) Performing minimization step: 2647. Total energy = 3188.1355 kcal/mol (3183.7835 without restraints) Performing minimization step: 2648. Total energy = 3187.6405 kcal/mol (3183.2907 without restraints) Performing minimization step: 2649. Total energy = 3187.1463 kcal/mol (3182.7987 without restraints) Performing minimization step: 2650. Total energy = 3186.6530 kcal/mol (3182.3076 without restraints) Performing minimization step: 2651. Total energy = 3186.1603 kcal/mol (3181.8170 without restraints) Performing minimization step: 2652. Total energy = 3185.6679 kcal/mol (3181.3267 without restraints) Performing minimization step: 2653. Total energy = 3185.1767 kcal/mol (3180.8374 without restraints) Performing minimization step: 2654. Total energy = 3184.6853 kcal/mol (3180.3484 without restraints) Performing minimization step: 2655. Total energy = 3184.1952 kcal/mol (3179.8606 without restraints) Performing minimization step: 2656. Total energy = 3183.7060 kcal/mol (3179.3734 without restraints) Performing minimization step: 2657. Total energy = 3183.2170 kcal/mol (3178.8865 without restraints) Performing minimization step: 2658. Total energy = 3182.7284 kcal/mol (3178.4000 without restraints) Performing minimization step: 2659. Total energy = 3182.2412 kcal/mol (3177.9152 without restraints) Performing minimization step: 2660. Total energy = 3181.7549 kcal/mol (3177.4309 without restraints) Performing minimization step: 2661. Total energy = 3181.2688 kcal/mol (3176.9469 without restraints) Performing minimization step: 2662. Total energy = 3180.7836 kcal/mol (3176.4638 without restraints) Performing minimization step: 2663. Total energy = 3180.2994 kcal/mol (3175.9818 without restraints) Performing minimization step: 2664. Total energy = 3179.8153 kcal/mol (3175.4998 without restraints) Performing minimization step: 2665. Total energy = 3179.3324 kcal/mol (3175.0190 without restraints) Performing minimization step: 2666. Total energy = 3178.8500 kcal/mol (3174.5388 without restraints) Performing minimization step: 2667. Total energy = 3178.3681 kcal/mol (3174.0589 without restraints) Performing minimization step: 2668. Total energy = 3177.8869 kcal/mol (3173.5798 without restraints) Performing minimization step: 2669. Total energy = 3177.4063 kcal/mol (3173.1014 without restraints) Performing minimization step: 2670. Total energy = 3176.9262 kcal/mol (3172.6234 without restraints) Performing minimization step: 2671. Total energy = 3176.4464 kcal/mol (3172.1456 without restraints) Performing minimization step: 2672. Total energy = 3175.9677 kcal/mol (3171.6691 without restraints) Performing minimization step: 2673. Total energy = 3175.4896 kcal/mol (3171.1931 without restraints) Performing minimization step: 2674. Total energy = 3175.0121 kcal/mol (3170.7178 without restraints) Performing minimization step: 2675. Total energy = 3174.5352 kcal/mol (3170.2429 without restraints) Performing minimization step: 2676. Total energy = 3174.0596 kcal/mol (3169.7693 without restraints) Performing minimization step: 2677. Total energy = 3173.5842 kcal/mol (3169.2962 without restraints) Performing minimization step: 2678. Total energy = 3173.1095 kcal/mol (3168.8236 without restraints) Performing minimization step: 2679. Total energy = 3172.6357 kcal/mol (3168.3519 without restraints) Performing minimization step: 2680. Total energy = 3172.1630 kcal/mol (3167.8812 without restraints) Performing minimization step: 2681. Total energy = 3171.6902 kcal/mol (3167.4104 without restraints) Performing minimization step: 2682. Total energy = 3171.2181 kcal/mol (3166.9407 without restraints) Performing minimization step: 2683. Total energy = 3170.7469 kcal/mol (3166.4714 without restraints) Performing minimization step: 2684. Total energy = 3170.2764 kcal/mol (3166.0031 without restraints) Performing minimization step: 2685. Total energy = 3169.8066 kcal/mol (3165.5353 without restraints) Performing minimization step: 2686. Total energy = 3169.3372 kcal/mol (3165.0680 without restraints) Performing minimization step: 2687. Total energy = 3168.8686 kcal/mol (3164.6015 without restraints) Performing minimization step: 2688. Total energy = 3168.4002 kcal/mol (3164.1352 without restraints) Performing minimization step: 2689. Total energy = 3167.9327 kcal/mol (3163.6698 without restraints) Performing minimization step: 2690. Total energy = 3167.4656 kcal/mol (3163.2047 without restraints) Performing minimization step: 2691. Total energy = 3166.9994 kcal/mol (3162.7405 without restraints) Performing minimization step: 2692. Total energy = 3166.5337 kcal/mol (3162.2770 without restraints) Performing minimization step: 2693. Total energy = 3166.0689 kcal/mol (3161.8143 without restraints) Performing minimization step: 2694. Total energy = 3165.6047 kcal/mol (3161.3523 without restraints) Performing minimization step: 2695. Total energy = 3165.1409 kcal/mol (3160.8903 without restraints) Performing minimization step: 2696. Total energy = 3164.6780 kcal/mol (3160.4295 without restraints) Performing minimization step: 2697. Total energy = 3164.2160 kcal/mol (3159.9696 without restraints) Performing minimization step: 2698. Total energy = 3163.7538 kcal/mol (3159.5095 without restraints) Performing minimization step: 2699. Total energy = 3163.2922 kcal/mol (3159.0499 without restraints) Performing minimization step: 2700. Total energy = 3162.8313 kcal/mol (3158.5910 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 3162.3711 kcal/mol (3158.1328 without restraints) Performing minimization step: 2702. Total energy = 3161.9114 kcal/mol (3157.6753 without restraints) Performing minimization step: 2703. Total energy = 3161.4528 kcal/mol (3157.2187 without restraints) Performing minimization step: 2704. Total energy = 3160.9946 kcal/mol (3156.7626 without restraints) Performing minimization step: 2705. Total energy = 3160.5370 kcal/mol (3156.3070 without restraints) Performing minimization step: 2706. Total energy = 3160.0804 kcal/mol (3155.8524 without restraints) Performing minimization step: 2707. Total energy = 3159.6237 kcal/mol (3155.3978 without restraints) Performing minimization step: 2708. Total energy = 3159.1679 kcal/mol (3154.9440 without restraints) Performing minimization step: 2709. Total energy = 3158.7126 kcal/mol (3154.4907 without restraints) Performing minimization step: 2710. Total energy = 3158.2574 kcal/mol (3154.0375 without restraints) Performing minimization step: 2711. Total energy = 3157.8034 kcal/mol (3153.5856 without restraints) Performing minimization step: 2712. Total energy = 3157.3500 kcal/mol (3153.1342 without restraints) Performing minimization step: 2713. Total energy = 3156.8967 kcal/mol (3152.6830 without restraints) Performing minimization step: 2714. Total energy = 3156.4450 kcal/mol (3152.2334 without restraints) Performing minimization step: 2715. Total energy = 3155.9932 kcal/mol (3151.7835 without restraints) Performing minimization step: 2716. Total energy = 3155.5419 kcal/mol (3151.3344 without restraints) Performing minimization step: 2717. Total energy = 3155.0916 kcal/mol (3150.8860 without restraints) Performing minimization step: 2718. Total energy = 3154.6415 kcal/mol (3150.4378 without restraints) Performing minimization step: 2719. Total energy = 3154.1922 kcal/mol (3149.9906 without restraints) Performing minimization step: 2720. Total energy = 3153.7433 kcal/mol (3149.5438 without restraints) Performing minimization step: 2721. Total energy = 3153.2956 kcal/mol (3149.0980 without restraints) Performing minimization step: 2722. Total energy = 3152.8478 kcal/mol (3148.6523 without restraints) Performing minimization step: 2723. Total energy = 3152.4008 kcal/mol (3148.2073 without restraints) Performing minimization step: 2724. Total energy = 3151.9550 kcal/mol (3147.7636 without restraints) Performing minimization step: 2725. Total energy = 3151.5093 kcal/mol (3147.3199 without restraints) Performing minimization step: 2726. Total energy = 3151.0642 kcal/mol (3146.8767 without restraints) Performing minimization step: 2727. Total energy = 3150.6196 kcal/mol (3146.4341 without restraints) Performing minimization step: 2728. Total energy = 3150.1753 kcal/mol (3145.9918 without restraints) Performing minimization step: 2729. Total energy = 3149.7317 kcal/mol (3145.5501 without restraints) Performing minimization step: 2730. Total energy = 3149.2890 kcal/mol (3145.1094 without restraints) Performing minimization step: 2731. Total energy = 3148.8462 kcal/mol (3144.6686 without restraints) Performing minimization step: 2732. Total energy = 3148.4043 kcal/mol (3144.2288 without restraints) Performing minimization step: 2733. Total energy = 3147.9630 kcal/mol (3143.7893 without restraints) Performing minimization step: 2734. Total energy = 3147.5227 kcal/mol (3143.3511 without restraints) Performing minimization step: 2735. Total energy = 3147.0824 kcal/mol (3142.9128 without restraints) Performing minimization step: 2736. Total energy = 3146.6428 kcal/mol (3142.4752 without restraints) Performing minimization step: 2737. Total energy = 3146.2038 kcal/mol (3142.0381 without restraints) Performing minimization step: 2738. Total energy = 3145.7654 kcal/mol (3141.6018 without restraints) Performing minimization step: 2739. Total energy = 3145.3271 kcal/mol (3141.1654 without restraints) Performing minimization step: 2740. Total energy = 3144.8894 kcal/mol (3140.7296 without restraints) Performing minimization step: 2741. Total energy = 3144.4527 kcal/mol (3140.2949 without restraints) Performing minimization step: 2742. Total energy = 3144.0164 kcal/mol (3139.8606 without restraints) Performing minimization step: 2743. Total energy = 3143.5805 kcal/mol (3139.4266 without restraints) Performing minimization step: 2744. Total energy = 3143.1455 kcal/mol (3138.9936 without restraints) Performing minimization step: 2745. Total energy = 3142.7107 kcal/mol (3138.5608 without restraints) Performing minimization step: 2746. Total energy = 3142.2768 kcal/mol (3138.1289 without restraints) Performing minimization step: 2747. Total energy = 3141.8428 kcal/mol (3137.6968 without restraints) Performing minimization step: 2748. Total energy = 3141.4101 kcal/mol (3137.2660 without restraints) Performing minimization step: 2749. Total energy = 3140.9775 kcal/mol (3136.8354 without restraints) Performing minimization step: 2750. Total energy = 3140.5451 kcal/mol (3136.4049 without restraints) Performing minimization step: 2751. Total energy = 3140.1133 kcal/mol (3135.9749 without restraints) Performing minimization step: 2752. Total energy = 3139.6820 kcal/mol (3135.5459 without restraints) Performing minimization step: 2753. Total energy = 3139.2519 kcal/mol (3135.1176 without restraints) Performing minimization step: 2754. Total energy = 3138.8221 kcal/mol (3134.6898 without restraints) Performing minimization step: 2755. Total energy = 3138.3930 kcal/mol (3134.2626 without restraints) Performing minimization step: 2756. Total energy = 3137.9639 kcal/mol (3133.8354 without restraints) Performing minimization step: 2757. Total energy = 3137.5357 kcal/mol (3133.4091 without restraints) Performing minimization step: 2758. Total energy = 3137.1079 kcal/mol (3132.9833 without restraints) Performing minimization step: 2759. Total energy = 3136.6808 kcal/mol (3132.5581 without restraints) Performing minimization step: 2760. Total energy = 3136.2545 kcal/mol (3132.1336 without restraints) Performing minimization step: 2761. Total energy = 3135.8283 kcal/mol (3131.7094 without restraints) Performing minimization step: 2762. Total energy = 3135.4025 kcal/mol (3131.2856 without restraints) Performing minimization step: 2763. Total energy = 3134.9772 kcal/mol (3130.8622 without restraints) Performing minimization step: 2764. Total energy = 3134.5528 kcal/mol (3130.4398 without restraints) Performing minimization step: 2765. Total energy = 3134.1291 kcal/mol (3130.0180 without restraints) Performing minimization step: 2766. Total energy = 3133.7054 kcal/mol (3129.5961 without restraints) Performing minimization step: 2767. Total energy = 3133.2823 kcal/mol (3129.1752 without restraints) Performing minimization step: 2768. Total energy = 3132.8596 kcal/mol (3128.7541 without restraints) Performing minimization step: 2769. Total energy = 3132.4374 kcal/mol (3128.3337 without restraints) Performing minimization step: 2770. Total energy = 3132.0159 kcal/mol (3127.9144 without restraints) Performing minimization step: 2771. Total energy = 3131.5948 kcal/mol (3127.4951 without restraints) Performing minimization step: 2772. Total energy = 3131.1740 kcal/mol (3127.0762 without restraints) Performing minimization step: 2773. Total energy = 3130.7540 kcal/mol (3126.6581 without restraints) Performing minimization step: 2774. Total energy = 3130.3344 kcal/mol (3126.2405 without restraints) Performing minimization step: 2775. Total energy = 3129.9152 kcal/mol (3125.8231 without restraints) Performing minimization step: 2776. Total energy = 3129.4965 kcal/mol (3125.4063 without restraints) Performing minimization step: 2777. Total energy = 3129.0785 kcal/mol (3124.9902 without restraints) Performing minimization step: 2778. Total energy = 3128.6609 kcal/mol (3124.5744 without restraints) Performing minimization step: 2779. Total energy = 3128.2437 kcal/mol (3124.1591 without restraints) Performing minimization step: 2780. Total energy = 3127.8271 kcal/mol (3123.7445 without restraints) Performing minimization step: 2781. Total energy = 3127.4107 kcal/mol (3123.3300 without restraints) Performing minimization step: 2782. Total energy = 3126.9951 kcal/mol (3122.9162 without restraints) Performing minimization step: 2783. Total energy = 3126.5798 kcal/mol (3122.5028 without restraints) Performing minimization step: 2784. Total energy = 3126.1655 kcal/mol (3122.0904 without restraints) Performing minimization step: 2785. Total energy = 3125.7513 kcal/mol (3121.6780 without restraints) Performing minimization step: 2786. Total energy = 3125.3381 kcal/mol (3121.2667 without restraints) Performing minimization step: 2787. Total energy = 3124.9249 kcal/mol (3120.8554 without restraints) Performing minimization step: 2788. Total energy = 3124.5124 kcal/mol (3120.4447 without restraints) Performing minimization step: 2789. Total energy = 3124.1002 kcal/mol (3120.0344 without restraints) Performing minimization step: 2790. Total energy = 3123.6887 kcal/mol (3119.6248 without restraints) Performing minimization step: 2791. Total energy = 3123.2777 kcal/mol (3119.2156 without restraints) Performing minimization step: 2792. Total energy = 3122.8669 kcal/mol (3118.8067 without restraints) Performing minimization step: 2793. Total energy = 3122.4566 kcal/mol (3118.3983 without restraints) Performing minimization step: 2794. Total energy = 3122.0464 kcal/mol (3117.9900 without restraints) Performing minimization step: 2795. Total energy = 3121.6373 kcal/mol (3117.5827 without restraints) Performing minimization step: 2796. Total energy = 3121.2285 kcal/mol (3117.1757 without restraints) Performing minimization step: 2797. Total energy = 3120.8205 kcal/mol (3116.7696 without restraints) Performing minimization step: 2798. Total energy = 3120.4122 kcal/mol (3116.3630 without restraints) Performing minimization step: 2799. Total energy = 3120.0049 kcal/mol (3115.9577 without restraints) Performing minimization step: 2800. Total energy = 3119.5980 kcal/mol (3115.5527 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 3119.1913 kcal/mol (3115.1478 without restraints) Performing minimization step: 2802. Total energy = 3118.7853 kcal/mol (3114.7436 without restraints) Performing minimization step: 2803. Total energy = 3118.3800 kcal/mol (3114.3403 without restraints) Performing minimization step: 2804. Total energy = 3117.9748 kcal/mol (3113.9368 without restraints) Performing minimization step: 2805. Total energy = 3117.5703 kcal/mol (3113.5341 without restraints) Performing minimization step: 2806. Total energy = 3117.1665 kcal/mol (3113.1321 without restraints) Performing minimization step: 2807. Total energy = 3116.7632 kcal/mol (3112.7308 without restraints) Performing minimization step: 2808. Total energy = 3116.3593 kcal/mol (3112.3284 without restraints) Performing minimization step: 2809. Total energy = 3115.9559 kcal/mol (3111.9271 without restraints) Performing minimization step: 2810. Total energy = 3115.5538 kcal/mol (3111.5267 without restraints) Performing minimization step: 2811. Total energy = 3115.1519 kcal/mol (3111.1266 without restraints) Performing minimization step: 2812. Total energy = 3114.7505 kcal/mol (3110.7270 without restraints) Performing minimization step: 2813. Total energy = 3114.3499 kcal/mol (3110.3283 without restraints) Performing minimization step: 2814. Total energy = 3113.9493 kcal/mol (3109.9295 without restraints) Performing minimization step: 2815. Total energy = 3113.5486 kcal/mol (3109.5306 without restraints) Performing minimization step: 2816. Total energy = 3113.1489 kcal/mol (3109.1327 without restraints) Performing minimization step: 2817. Total energy = 3112.7497 kcal/mol (3108.7353 without restraints) Performing minimization step: 2818. Total energy = 3112.3509 kcal/mol (3108.3383 without restraints) Performing minimization step: 2819. Total energy = 3111.9526 kcal/mol (3107.9418 without restraints) Performing minimization step: 2820. Total energy = 3111.5546 kcal/mol (3107.5456 without restraints) Performing minimization step: 2821. Total energy = 3111.1574 kcal/mol (3107.1502 without restraints) Performing minimization step: 2822. Total energy = 3110.7603 kcal/mol (3106.7548 without restraints) Performing minimization step: 2823. Total energy = 3110.3638 kcal/mol (3106.3603 without restraints) Performing minimization step: 2824. Total energy = 3109.9675 kcal/mol (3105.9657 without restraints) Performing minimization step: 2825. Total energy = 3109.5714 kcal/mol (3105.5714 without restraints) Performing minimization step: 2826. Total energy = 3109.1759 kcal/mol (3105.1776 without restraints) Performing minimization step: 2827. Total energy = 3108.7809 kcal/mol (3104.7842 without restraints) Performing minimization step: 2828. Total energy = 3108.3865 kcal/mol (3104.3917 without restraints) Performing minimization step: 2829. Total energy = 3107.9921 kcal/mol (3103.9993 without restraints) Performing minimization step: 2830. Total energy = 3107.5974 kcal/mol (3103.6063 without restraints) Performing minimization step: 2831. Total energy = 3107.2044 kcal/mol (3103.2152 without restraints) Performing minimization step: 2832. Total energy = 3106.8117 kcal/mol (3102.8241 without restraints) Performing minimization step: 2833. Total energy = 3106.4194 kcal/mol (3102.4336 without restraints) Performing minimization step: 2834. Total energy = 3106.0274 kcal/mol (3102.0434 without restraints) Performing minimization step: 2835. Total energy = 3105.6360 kcal/mol (3101.6538 without restraints) Performing minimization step: 2836. Total energy = 3105.2453 kcal/mol (3101.2648 without restraints) Performing minimization step: 2837. Total energy = 3104.8542 kcal/mol (3100.8754 without restraints) Performing minimization step: 2838. Total energy = 3104.4638 kcal/mol (3100.4868 without restraints) Performing minimization step: 2839. Total energy = 3104.0742 kcal/mol (3100.0990 without restraints) Performing minimization step: 2840. Total energy = 3103.6846 kcal/mol (3099.7111 without restraints) Performing minimization step: 2841. Total energy = 3103.2951 kcal/mol (3099.3233 without restraints) Performing minimization step: 2842. Total energy = 3102.9067 kcal/mol (3098.9368 without restraints) Performing minimization step: 2843. Total energy = 3102.5185 kcal/mol (3098.5502 without restraints) Performing minimization step: 2844. Total energy = 3102.1304 kcal/mol (3098.1639 without restraints) Performing minimization step: 2845. Total energy = 3101.7437 kcal/mol (3097.7792 without restraints) Performing minimization step: 2846. Total energy = 3101.3566 kcal/mol (3097.3934 without restraints) Performing minimization step: 2847. Total energy = 3100.9695 kcal/mol (3097.0081 without restraints) Performing minimization step: 2848. Total energy = 3100.5827 kcal/mol (3096.6231 without restraints) Performing minimization step: 2849. Total energy = 3100.1967 kcal/mol (3096.2389 without restraints) Performing minimization step: 2850. Total energy = 3099.8113 kcal/mol (3095.8552 without restraints) Performing minimization step: 2851. Total energy = 3099.4262 kcal/mol (3095.4720 without restraints) Performing minimization step: 2852. Total energy = 3099.0417 kcal/mol (3095.0891 without restraints) Performing minimization step: 2853. Total energy = 3098.6575 kcal/mol (3094.7067 without restraints) Performing minimization step: 2854. Total energy = 3098.2737 kcal/mol (3094.3246 without restraints) Performing minimization step: 2855. Total energy = 3097.8904 kcal/mol (3093.9430 without restraints) Performing minimization step: 2856. Total energy = 3097.5071 kcal/mol (3093.5614 without restraints) Performing minimization step: 2857. Total energy = 3097.1242 kcal/mol (3093.1802 without restraints) Performing minimization step: 2858. Total energy = 3096.7420 kcal/mol (3092.7997 without restraints) Performing minimization step: 2859. Total energy = 3096.3600 kcal/mol (3092.4195 without restraints) Performing minimization step: 2860. Total energy = 3095.9788 kcal/mol (3092.0399 without restraints) Performing minimization step: 2861. Total energy = 3095.5976 kcal/mol (3091.6604 without restraints) Performing minimization step: 2862. Total energy = 3095.2170 kcal/mol (3091.2816 without restraints) Performing minimization step: 2863. Total energy = 3094.8365 kcal/mol (3090.9029 without restraints) Performing minimization step: 2864. Total energy = 3094.4568 kcal/mol (3090.5249 without restraints) Performing minimization step: 2865. Total energy = 3094.0772 kcal/mol (3090.1469 without restraints) Performing minimization step: 2866. Total energy = 3093.6985 kcal/mol (3089.7699 without restraints) Performing minimization step: 2867. Total energy = 3093.3197 kcal/mol (3089.3928 without restraints) Performing minimization step: 2868. Total energy = 3092.9412 kcal/mol (3089.0160 without restraints) Performing minimization step: 2869. Total energy = 3092.5630 kcal/mol (3088.6394 without restraints) Performing minimization step: 2870. Total energy = 3092.1854 kcal/mol (3088.2636 without restraints) Performing minimization step: 2871. Total energy = 3091.8083 kcal/mol (3087.8882 without restraints) Performing minimization step: 2872. Total energy = 3091.4314 kcal/mol (3087.5129 without restraints) Performing minimization step: 2873. Total energy = 3091.0548 kcal/mol (3087.1380 without restraints) Performing minimization step: 2874. Total energy = 3090.6785 kcal/mol (3086.7634 without restraints) Performing minimization step: 2875. Total energy = 3090.3025 kcal/mol (3086.3890 without restraints) Performing minimization step: 2876. Total energy = 3089.9269 kcal/mol (3086.0152 without restraints) Performing minimization step: 2877. Total energy = 3089.5519 kcal/mol (3085.6419 without restraints) Performing minimization step: 2878. Total energy = 3089.1771 kcal/mol (3085.2687 without restraints) Performing minimization step: 2879. Total energy = 3088.8028 kcal/mol (3084.8961 without restraints) Performing minimization step: 2880. Total energy = 3088.4290 kcal/mol (3084.5240 without restraints) Performing minimization step: 2881. Total energy = 3088.0554 kcal/mol (3084.1519 without restraints) Performing minimization step: 2882. Total energy = 3087.6819 kcal/mol (3083.7801 without restraints) Performing minimization step: 2883. Total energy = 3087.3089 kcal/mol (3083.4088 without restraints) Performing minimization step: 2884. Total energy = 3086.9363 kcal/mol (3083.0376 without restraints) Performing minimization step: 2885. Total energy = 3086.5634 kcal/mol (3082.6666 without restraints) Performing minimization step: 2886. Total energy = 3086.1915 kcal/mol (3082.2964 without restraints) Performing minimization step: 2887. Total energy = 3085.8200 kcal/mol (3081.9266 without restraints) Performing minimization step: 2888. Total energy = 3085.4492 kcal/mol (3081.5574 without restraints) Performing minimization step: 2889. Total energy = 3085.0783 kcal/mol (3081.1880 without restraints) Performing minimization step: 2890. Total energy = 3084.7078 kcal/mol (3080.8193 without restraints) Performing minimization step: 2891. Total energy = 3084.3380 kcal/mol (3080.4511 without restraints) Performing minimization step: 2892. Total energy = 3083.9685 kcal/mol (3080.0832 without restraints) Performing minimization step: 2893. Total energy = 3083.5988 kcal/mol (3079.7151 without restraints) Performing minimization step: 2894. Total energy = 3083.2295 kcal/mol (3079.3476 without restraints) Performing minimization step: 2895. Total energy = 3082.8603 kcal/mol (3078.9799 without restraints) Performing minimization step: 2896. Total energy = 3082.4923 kcal/mol (3078.6137 without restraints) Performing minimization step: 2897. Total energy = 3082.1244 kcal/mol (3078.2474 without restraints) Performing minimization step: 2898. Total energy = 3081.7569 kcal/mol (3077.8816 without restraints) Performing minimization step: 2899. Total energy = 3081.3897 kcal/mol (3077.5162 without restraints) Performing minimization step: 2900. Total energy = 3081.0232 kcal/mol (3077.1511 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 3080.6569 kcal/mol (3076.7864 without restraints) Performing minimization step: 2902. Total energy = 3080.2908 kcal/mol (3076.4220 without restraints) Performing minimization step: 2903. Total energy = 3079.9249 kcal/mol (3076.0577 without restraints) Performing minimization step: 2904. Total energy = 3079.5592 kcal/mol (3075.6935 without restraints) Performing minimization step: 2905. Total energy = 3079.1938 kcal/mol (3075.3297 without restraints) Performing minimization step: 2906. Total energy = 3078.8289 kcal/mol (3074.9665 without restraints) Performing minimization step: 2907. Total energy = 3078.4652 kcal/mol (3074.6044 without restraints) Performing minimization step: 2908. Total energy = 3078.1011 kcal/mol (3074.2420 without restraints) Performing minimization step: 2909. Total energy = 3077.7380 kcal/mol (3073.8805 without restraints) Performing minimization step: 2910. Total energy = 3077.3743 kcal/mol (3073.5183 without restraints) Performing minimization step: 2911. Total energy = 3077.0108 kcal/mol (3073.1562 without restraints) Performing minimization step: 2912. Total energy = 3076.6481 kcal/mol (3072.7952 without restraints) Performing minimization step: 2913. Total energy = 3076.2856 kcal/mol (3072.4345 without restraints) Performing minimization step: 2914. Total energy = 3075.9235 kcal/mol (3072.0739 without restraints) Performing minimization step: 2915. Total energy = 3075.5616 kcal/mol (3071.7135 without restraints) Performing minimization step: 2916. Total energy = 3075.2001 kcal/mol (3071.3537 without restraints) Performing minimization step: 2917. Total energy = 3074.8389 kcal/mol (3070.9941 without restraints) Performing minimization step: 2918. Total energy = 3074.4780 kcal/mol (3070.6348 without restraints) Performing minimization step: 2919. Total energy = 3074.1175 kcal/mol (3070.2758 without restraints) Performing minimization step: 2920. Total energy = 3073.7570 kcal/mol (3069.9168 without restraints) Performing minimization step: 2921. Total energy = 3073.3970 kcal/mol (3069.5585 without restraints) Performing minimization step: 2922. Total energy = 3073.0373 kcal/mol (3069.2003 without restraints) Performing minimization step: 2923. Total energy = 3072.6776 kcal/mol (3068.8423 without restraints) Performing minimization step: 2924. Total energy = 3072.3187 kcal/mol (3068.4849 without restraints) Performing minimization step: 2925. Total energy = 3071.9599 kcal/mol (3068.1279 without restraints) Performing minimization step: 2926. Total energy = 3071.6017 kcal/mol (3067.7711 without restraints) Performing minimization step: 2927. Total energy = 3071.2439 kcal/mol (3067.4148 without restraints) Performing minimization step: 2928. Total energy = 3070.8861 kcal/mol (3067.0586 without restraints) Performing minimization step: 2929. Total energy = 3070.5292 kcal/mol (3066.7033 without restraints) Performing minimization step: 2930. Total energy = 3070.1715 kcal/mol (3066.3472 without restraints) Performing minimization step: 2931. Total energy = 3069.8149 kcal/mol (3065.9921 without restraints) Performing minimization step: 2932. Total energy = 3069.4585 kcal/mol (3065.6373 without restraints) Performing minimization step: 2933. Total energy = 3069.1024 kcal/mol (3065.2827 without restraints) Performing minimization step: 2934. Total energy = 3068.7470 kcal/mol (3064.9290 without restraints) Performing minimization step: 2935. Total energy = 3068.3919 kcal/mol (3064.5758 without restraints) Performing minimization step: 2936. Total energy = 3068.0371 kcal/mol (3064.2222 without restraints) Performing minimization step: 2937. Total energy = 3067.6823 kcal/mol (3063.8689 without restraints) Performing minimization step: 2938. Total energy = 3067.3278 kcal/mol (3063.5160 without restraints) Performing minimization step: 2939. Total energy = 3066.9738 kcal/mol (3063.1635 without restraints) Performing minimization step: 2940. Total energy = 3066.6204 kcal/mol (3062.8118 without restraints) Performing minimization step: 2941. Total energy = 3066.2671 kcal/mol (3062.4599 without restraints) Performing minimization step: 2942. Total energy = 3065.9136 kcal/mol (3062.1079 without restraints) Performing minimization step: 2943. Total energy = 3065.5600 kcal/mol (3061.7559 without restraints) Performing minimization step: 2944. Total energy = 3065.2071 kcal/mol (3061.4045 without restraints) Performing minimization step: 2945. Total energy = 3064.8545 kcal/mol (3061.0534 without restraints) Performing minimization step: 2946. Total energy = 3064.5023 kcal/mol (3060.7028 without restraints) Performing minimization step: 2947. Total energy = 3064.1505 kcal/mol (3060.3525 without restraints) Performing minimization step: 2948. Total energy = 3063.7987 kcal/mol (3060.0021 without restraints) Performing minimization step: 2949. Total energy = 3063.4475 kcal/mol (3059.6525 without restraints) Performing minimization step: 2950. Total energy = 3063.0965 kcal/mol (3059.3031 without restraints) Performing minimization step: 2951. Total energy = 3062.7459 kcal/mol (3058.9540 without restraints) Performing minimization step: 2952. Total energy = 3062.3950 kcal/mol (3058.6044 without restraints) Performing minimization step: 2953. Total energy = 3062.0449 kcal/mol (3058.2559 without restraints) Performing minimization step: 2954. Total energy = 3061.6953 kcal/mol (3057.9079 without restraints) Performing minimization step: 2955. Total energy = 3061.3459 kcal/mol (3057.5600 without restraints) Performing minimization step: 2956. Total energy = 3060.9967 kcal/mol (3057.2124 without restraints) Performing minimization step: 2957. Total energy = 3060.6482 kcal/mol (3056.8653 without restraints) Performing minimization step: 2958. Total energy = 3060.2995 kcal/mol (3056.5182 without restraints) Performing minimization step: 2959. Total energy = 3059.9514 kcal/mol (3056.1715 without restraints) Performing minimization step: 2960. Total energy = 3059.6034 kcal/mol (3055.8251 without restraints) Performing minimization step: 2961. Total energy = 3059.2557 kcal/mol (3055.4789 without restraints) Performing minimization step: 2962. Total energy = 3058.9083 kcal/mol (3055.1330 without restraints) Performing minimization step: 2963. Total energy = 3058.5613 kcal/mol (3054.7875 without restraints) Performing minimization step: 2964. Total energy = 3058.2145 kcal/mol (3054.4422 without restraints) Performing minimization step: 2965. Total energy = 3057.8680 kcal/mol (3054.0972 without restraints) Performing minimization step: 2966. Total energy = 3057.5216 kcal/mol (3053.7523 without restraints) Performing minimization step: 2967. Total energy = 3057.1755 kcal/mol (3053.4077 without restraints) Performing minimization step: 2968. Total energy = 3056.8300 kcal/mol (3053.0636 without restraints) Performing minimization step: 2969. Total energy = 3056.4847 kcal/mol (3052.7197 without restraints) Performing minimization step: 2970. Total energy = 3056.1400 kcal/mol (3052.3766 without restraints) Performing minimization step: 2971. Total energy = 3055.7951 kcal/mol (3052.0332 without restraints) Performing minimization step: 2972. Total energy = 3055.4513 kcal/mol (3051.6909 without restraints) Performing minimization step: 2973. Total energy = 3055.1072 kcal/mol (3051.3483 without restraints) Performing minimization step: 2974. Total energy = 3054.7634 kcal/mol (3051.0060 without restraints) Performing minimization step: 2975. Total energy = 3054.4199 kcal/mol (3050.6640 without restraints) Performing minimization step: 2976. Total energy = 3054.0765 kcal/mol (3050.3220 without restraints) Performing minimization step: 2977. Total energy = 3053.7333 kcal/mol (3049.9803 without restraints) Performing minimization step: 2978. Total energy = 3053.3902 kcal/mol (3049.6386 without restraints) Performing minimization step: 2979. Total energy = 3053.0475 kcal/mol (3049.2975 without restraints) Performing minimization step: 2980. Total energy = 3052.7053 kcal/mol (3048.9567 without restraints) Performing minimization step: 2981. Total energy = 3052.3626 kcal/mol (3048.6154 without restraints) Performing minimization step: 2982. Total energy = 3052.0207 kcal/mol (3048.2748 without restraints) Performing minimization step: 2983. Total energy = 3051.6790 kcal/mol (3047.9348 without restraints) Performing minimization step: 2984. Total energy = 3051.3383 kcal/mol (3047.5956 without restraints) Performing minimization step: 2985. Total energy = 3050.9971 kcal/mol (3047.2558 without restraints) Performing minimization step: 2986. Total energy = 3050.6567 kcal/mol (3046.9168 without restraints) Performing minimization step: 2987. Total energy = 3050.3160 kcal/mol (3046.5776 without restraints) Performing minimization step: 2988. Total energy = 3049.9761 kcal/mol (3046.2391 without restraints) Performing minimization step: 2989. Total energy = 3049.6362 kcal/mol (3045.9007 without restraints) Performing minimization step: 2990. Total energy = 3049.2968 kcal/mol (3045.5627 without restraints) Performing minimization step: 2991. Total energy = 3048.9574 kcal/mol (3045.2248 without restraints) Performing minimization step: 2992. Total energy = 3048.6184 kcal/mol (3044.8872 without restraints) Performing minimization step: 2993. Total energy = 3048.2796 kcal/mol (3044.5498 without restraints) Performing minimization step: 2994. Total energy = 3047.9409 kcal/mol (3044.2126 without restraints) Performing minimization step: 2995. Total energy = 3047.6025 kcal/mol (3043.8756 without restraints) Performing minimization step: 2996. Total energy = 3047.2641 kcal/mol (3043.5387 without restraints) Performing minimization step: 2997. Total energy = 3046.9263 kcal/mol (3043.2023 without restraints) Performing minimization step: 2998. Total energy = 3046.5889 kcal/mol (3042.8663 without restraints) Performing minimization step: 2999. Total energy = 3046.2516 kcal/mol (3042.5304 without restraints) Performing minimization step: 3000. Total energy = 3045.9143 kcal/mol (3042.1946 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 3045.5779 kcal/mol (3041.8596 without restraints) Performing minimization step: 3002. Total energy = 3045.2418 kcal/mol (3041.5250 without restraints) Performing minimization step: 3003. Total energy = 3044.9051 kcal/mol (3041.1896 without restraints) Performing minimization step: 3004. Total energy = 3044.5693 kcal/mol (3040.8552 without restraints) Performing minimization step: 3005. Total energy = 3044.2337 kcal/mol (3040.5212 without restraints) Performing minimization step: 3006. Total energy = 3043.8983 kcal/mol (3040.1871 without restraints) Performing minimization step: 3007. Total energy = 3043.5627 kcal/mol (3039.8529 without restraints) Performing minimization step: 3008. Total energy = 3043.2278 kcal/mol (3039.5194 without restraints) Performing minimization step: 3009. Total energy = 3042.8929 kcal/mol (3039.1859 without restraints) Performing minimization step: 3010. Total energy = 3042.5579 kcal/mol (3038.8522 without restraints) Performing minimization step: 3011. Total energy = 3042.2233 kcal/mol (3038.5191 without restraints) Performing minimization step: 3012. Total energy = 3041.8892 kcal/mol (3038.1865 without restraints) Performing minimization step: 3013. Total energy = 3041.5554 kcal/mol (3037.8541 without restraints) Performing minimization step: 3014. Total energy = 3041.2222 kcal/mol (3037.5223 without restraints) Performing minimization step: 3015. Total energy = 3040.8888 kcal/mol (3037.1903 without restraints) Performing minimization step: 3016. Total energy = 3040.5556 kcal/mol (3036.8584 without restraints) Performing minimization step: 3017. Total energy = 3040.2230 kcal/mol (3036.5272 without restraints) Performing minimization step: 3018. Total energy = 3039.8901 kcal/mol (3036.1958 without restraints) Performing minimization step: 3019. Total energy = 3039.5580 kcal/mol (3035.8651 without restraints) Performing minimization step: 3020. Total energy = 3039.2265 kcal/mol (3035.5350 without restraints) Performing minimization step: 3021. Total energy = 3038.8951 kcal/mol (3035.2048 without restraints) Performing minimization step: 3022. Total energy = 3038.5634 kcal/mol (3034.8746 without restraints) Performing minimization step: 3023. Total energy = 3038.2322 kcal/mol (3034.5448 without restraints) Performing minimization step: 3024. Total energy = 3037.9012 kcal/mol (3034.2151 without restraints) Performing minimization step: 3025. Total energy = 3037.5701 kcal/mol (3033.8855 without restraints) Performing minimization step: 3026. Total energy = 3037.2398 kcal/mol (3033.5565 without restraints) Performing minimization step: 3027. Total energy = 3036.9095 kcal/mol (3033.2276 without restraints) Performing minimization step: 3028. Total energy = 3036.5792 kcal/mol (3032.8987 without restraints) Performing minimization step: 3029. Total energy = 3036.2496 kcal/mol (3032.5705 without restraints) Performing minimization step: 3030. Total energy = 3035.9200 kcal/mol (3032.2423 without restraints) Performing minimization step: 3031. Total energy = 3035.5908 kcal/mol (3031.9144 without restraints) Performing minimization step: 3032. Total energy = 3035.2616 kcal/mol (3031.5866 without restraints) Performing minimization step: 3033. Total energy = 3034.9324 kcal/mol (3031.2588 without restraints) Performing minimization step: 3034. Total energy = 3034.6038 kcal/mol (3030.9317 without restraints) Performing minimization step: 3035. Total energy = 3034.2755 kcal/mol (3030.6046 without restraints) Performing minimization step: 3036. Total energy = 3033.9477 kcal/mol (3030.2780 without restraints) Performing minimization step: 3037. Total energy = 3033.6196 kcal/mol (3029.9514 without restraints) Performing minimization step: 3038. Total energy = 3033.2918 kcal/mol (3029.6249 without restraints) Performing minimization step: 3039. Total energy = 3032.9645 kcal/mol (3029.2990 without restraints) Performing minimization step: 3040. Total energy = 3032.6372 kcal/mol (3028.9731 without restraints) Performing minimization step: 3041. Total energy = 3032.3111 kcal/mol (3028.6483 without restraints) Performing minimization step: 3042. Total energy = 3031.9842 kcal/mol (3028.3227 without restraints) Performing minimization step: 3043. Total energy = 3031.6571 kcal/mol (3027.9971 without restraints) Performing minimization step: 3044. Total energy = 3031.3307 kcal/mol (3027.6720 without restraints) Performing minimization step: 3045. Total energy = 3031.0047 kcal/mol (3027.3473 without restraints) Performing minimization step: 3046. Total energy = 3030.6788 kcal/mol (3027.0228 without restraints) Performing minimization step: 3047. Total energy = 3030.3535 kcal/mol (3026.6989 without restraints) Performing minimization step: 3048. Total energy = 3030.0282 kcal/mol (3026.3749 without restraints) Performing minimization step: 3049. Total energy = 3029.7032 kcal/mol (3026.0513 without restraints) Performing minimization step: 3050. Total energy = 3029.3782 kcal/mol (3025.7276 without restraints) Performing minimization step: 3051. Total energy = 3029.0540 kcal/mol (3025.4046 without restraints) Performing minimization step: 3052. Total energy = 3028.7296 kcal/mol (3025.0818 without restraints) Performing minimization step: 3053. Total energy = 3028.4052 kcal/mol (3024.7585 without restraints) Performing minimization step: 3054. Total energy = 3028.0811 kcal/mol (3024.4358 without restraints) Performing minimization step: 3055. Total energy = 3027.7571 kcal/mol (3024.1131 without restraints) Performing minimization step: 3056. Total energy = 3027.4334 kcal/mol (3023.7908 without restraints) Performing minimization step: 3057. Total energy = 3027.1105 kcal/mol (3023.4691 without restraints) Performing minimization step: 3058. Total energy = 3026.7874 kcal/mol (3023.1474 without restraints) Performing minimization step: 3059. Total energy = 3026.4645 kcal/mol (3022.8258 without restraints) Performing minimization step: 3060. Total energy = 3026.1417 kcal/mol (3022.5043 without restraints) Performing minimization step: 3061. Total energy = 3025.8194 kcal/mol (3022.1833 without restraints) Performing minimization step: 3062. Total energy = 3025.4972 kcal/mol (3021.8626 without restraints) Performing minimization step: 3063. Total energy = 3025.1751 kcal/mol (3021.5417 without restraints) Performing minimization step: 3064. Total energy = 3024.8534 kcal/mol (3021.2213 without restraints) Performing minimization step: 3065. Total energy = 3024.5315 kcal/mol (3020.9007 without restraints) Performing minimization step: 3066. Total energy = 3024.2108 kcal/mol (3020.5813 without restraints) Performing minimization step: 3067. Total energy = 3023.8900 kcal/mol (3020.2619 without restraints) Performing minimization step: 3068. Total energy = 3023.5695 kcal/mol (3019.9426 without restraints) Performing minimization step: 3069. Total energy = 3023.2483 kcal/mol (3019.6228 without restraints) Performing minimization step: 3070. Total energy = 3022.9280 kcal/mol (3019.3037 without restraints) Performing minimization step: 3071. Total energy = 3022.6076 kcal/mol (3018.9846 without restraints) Performing minimization step: 3072. Total energy = 3022.2874 kcal/mol (3018.6657 without restraints) Performing minimization step: 3073. Total energy = 3021.9676 kcal/mol (3018.3472 without restraints) Performing minimization step: 3074. Total energy = 3021.6475 kcal/mol (3018.0285 without restraints) Performing minimization step: 3075. Total energy = 3021.3280 kcal/mol (3017.7102 without restraints) Performing minimization step: 3076. Total energy = 3021.0089 kcal/mol (3017.3925 without restraints) Performing minimization step: 3077. Total energy = 3020.6898 kcal/mol (3017.0747 without restraints) Performing minimization step: 3078. Total energy = 3020.3710 kcal/mol (3016.7571 without restraints) Performing minimization step: 3079. Total energy = 3020.0522 kcal/mol (3016.4396 without restraints) Performing minimization step: 3080. Total energy = 3019.7334 kcal/mol (3016.1220 without restraints) Performing minimization step: 3081. Total energy = 3019.4152 kcal/mol (3015.8053 without restraints) Performing minimization step: 3082. Total energy = 3019.0975 kcal/mol (3015.4887 without restraints) Performing minimization step: 3083. Total energy = 3018.7799 kcal/mol (3015.1725 without restraints) Performing minimization step: 3084. Total energy = 3018.4617 kcal/mol (3014.8555 without restraints) Performing minimization step: 3085. Total energy = 3018.1445 kcal/mol (3014.5396 without restraints) Performing minimization step: 3086. Total energy = 3017.8273 kcal/mol (3014.2237 without restraints) Performing minimization step: 3087. Total energy = 3017.5102 kcal/mol (3013.9077 without restraints) Performing minimization step: 3088. Total energy = 3017.1932 kcal/mol (3013.5923 without restraints) Performing minimization step: 3089. Total energy = 3016.8766 kcal/mol (3013.2768 without restraints) Performing minimization step: 3090. Total energy = 3016.5603 kcal/mol (3012.9617 without restraints) Performing minimization step: 3091. Total energy = 3016.2436 kcal/mol (3012.6464 without restraints) Performing minimization step: 3092. Total energy = 3015.9279 kcal/mol (3012.3319 without restraints) Performing minimization step: 3093. Total energy = 3015.6124 kcal/mol (3012.0177 without restraints) Performing minimization step: 3094. Total energy = 3015.2969 kcal/mol (3011.7036 without restraints) Performing minimization step: 3095. Total energy = 3014.9817 kcal/mol (3011.3895 without restraints) Performing minimization step: 3096. Total energy = 3014.6665 kcal/mol (3011.0756 without restraints) Performing minimization step: 3097. Total energy = 3014.3515 kcal/mol (3010.7618 without restraints) Performing minimization step: 3098. Total energy = 3014.0370 kcal/mol (3010.4486 without restraints) Performing minimization step: 3099. Total energy = 3013.7228 kcal/mol (3010.1357 without restraints) Performing minimization step: 3100. Total energy = 3013.4085 kcal/mol (3009.8226 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 3013.0944 kcal/mol (3009.5098 without restraints) Performing minimization step: 3102. Total energy = 3012.7809 kcal/mol (3009.1976 without restraints) Performing minimization step: 3103. Total energy = 3012.4672 kcal/mol (3008.8851 without restraints) Performing minimization step: 3104. Total energy = 3012.1544 kcal/mol (3008.5736 without restraints) Performing minimization step: 3105. Total energy = 3011.8408 kcal/mol (3008.2612 without restraints) Performing minimization step: 3106. Total energy = 3011.5278 kcal/mol (3007.9494 without restraints) Performing minimization step: 3107. Total energy = 3011.2151 kcal/mol (3007.6380 without restraints) Performing minimization step: 3108. Total energy = 3010.9023 kcal/mol (3007.3263 without restraints) Performing minimization step: 3109. Total energy = 3010.5897 kcal/mol (3007.0152 without restraints) Performing minimization step: 3110. Total energy = 3010.2774 kcal/mol (3006.7040 without restraints) Performing minimization step: 3111. Total energy = 3009.9654 kcal/mol (3006.3933 without restraints) Performing minimization step: 3112. Total energy = 3009.6535 kcal/mol (3006.0824 without restraints) Performing minimization step: 3113. Total energy = 3009.3416 kcal/mol (3005.7720 without restraints) Performing minimization step: 3114. Total energy = 3009.0302 kcal/mol (3005.4619 without restraints) Performing minimization step: 3115. Total energy = 3008.7190 kcal/mol (3005.1518 without restraints) Performing minimization step: 3116. Total energy = 3008.4079 kcal/mol (3004.8418 without restraints) Performing minimization step: 3117. Total energy = 3008.0968 kcal/mol (3004.5321 without restraints) Performing minimization step: 3118. Total energy = 3007.7862 kcal/mol (3004.2226 without restraints) Performing minimization step: 3119. Total energy = 3007.4752 kcal/mol (3003.9130 without restraints) Performing minimization step: 3120. Total energy = 3007.1649 kcal/mol (3003.6039 without restraints) Performing minimization step: 3121. Total energy = 3006.8549 kcal/mol (3003.2951 without restraints) Performing minimization step: 3122. Total energy = 3006.5453 kcal/mol (3002.9866 without restraints) Performing minimization step: 3123. Total energy = 3006.2357 kcal/mol (3002.6782 without restraints) Performing minimization step: 3124. Total energy = 3005.9260 kcal/mol (3002.3697 without restraints) Performing minimization step: 3125. Total energy = 3005.6169 kcal/mol (3002.0619 without restraints) Performing minimization step: 3126. Total energy = 3005.3076 kcal/mol (3001.7539 without restraints) Performing minimization step: 3127. Total energy = 3004.9988 kcal/mol (3001.4464 without restraints) Performing minimization step: 3128. Total energy = 3004.6897 kcal/mol (3001.1383 without restraints) Performing minimization step: 3129. Total energy = 3004.3807 kcal/mol (3000.8306 without restraints) Performing minimization step: 3130. Total energy = 3004.0722 kcal/mol (3000.5233 without restraints) Performing minimization step: 3131. Total energy = 3003.7640 kcal/mol (3000.2163 without restraints) Performing minimization step: 3132. Total energy = 3003.4555 kcal/mol (2999.9090 without restraints) Performing minimization step: 3133. Total energy = 3003.1473 kcal/mol (2999.6020 without restraints) Performing minimization step: 3134. Total energy = 3002.8398 kcal/mol (2999.2958 without restraints) Performing minimization step: 3135. Total energy = 3002.5321 kcal/mol (2998.9893 without restraints) Performing minimization step: 3136. Total energy = 3002.2246 kcal/mol (2998.6829 without restraints) Performing minimization step: 3137. Total energy = 3001.9181 kcal/mol (2998.3777 without restraints) Performing minimization step: 3138. Total energy = 3001.6110 kcal/mol (2998.0718 without restraints) Performing minimization step: 3139. Total energy = 3001.3040 kcal/mol (2997.7660 without restraints) Performing minimization step: 3140. Total energy = 3000.9975 kcal/mol (2997.4606 without restraints) Performing minimization step: 3141. Total energy = 3000.6907 kcal/mol (2997.1550 without restraints) Performing minimization step: 3142. Total energy = 3000.3845 kcal/mol (2996.8500 without restraints) Performing minimization step: 3143. Total energy = 3000.0784 kcal/mol (2996.5452 without restraints) Performing minimization step: 3144. Total energy = 2999.7727 kcal/mol (2996.2406 without restraints) Performing minimization step: 3145. Total energy = 2999.4675 kcal/mol (2995.9368 without restraints) Performing minimization step: 3146. Total energy = 2999.1624 kcal/mol (2995.6327 without restraints) Performing minimization step: 3147. Total energy = 2998.8570 kcal/mol (2995.3285 without restraints) Performing minimization step: 3148. Total energy = 2998.5520 kcal/mol (2995.0247 without restraints) Performing minimization step: 3149. Total energy = 2998.2473 kcal/mol (2994.7211 without restraints) Performing minimization step: 3150. Total energy = 2997.9419 kcal/mol (2994.4170 without restraints) Performing minimization step: 3151. Total energy = 2997.6370 kcal/mol (2994.1133 without restraints) Performing minimization step: 3152. Total energy = 2997.3327 kcal/mol (2993.8100 without restraints) Performing minimization step: 3153. Total energy = 2997.0286 kcal/mol (2993.5071 without restraints) Performing minimization step: 3154. Total energy = 2996.7249 kcal/mol (2993.2048 without restraints) Performing minimization step: 3155. Total energy = 2996.4216 kcal/mol (2992.9025 without restraints) Performing minimization step: 3156. Total energy = 2996.1184 kcal/mol (2992.6005 without restraints) Performing minimization step: 3157. Total energy = 2995.8146 kcal/mol (2992.2979 without restraints) Performing minimization step: 3158. Total energy = 2995.5109 kcal/mol (2991.9955 without restraints) Performing minimization step: 3159. Total energy = 2995.2081 kcal/mol (2991.6938 without restraints) Performing minimization step: 3160. Total energy = 2994.9053 kcal/mol (2991.3919 without restraints) Performing minimization step: 3161. Total energy = 2994.6025 kcal/mol (2991.0905 without restraints) Performing minimization step: 3162. Total energy = 2994.3000 kcal/mol (2990.7892 without restraints) Performing minimization step: 3163. Total energy = 2993.9976 kcal/mol (2990.4879 without restraints) Performing minimization step: 3164. Total energy = 2993.6949 kcal/mol (2990.1864 without restraints) Performing minimization step: 3165. Total energy = 2993.3927 kcal/mol (2989.8855 without restraints) Performing minimization step: 3166. Total energy = 2993.0909 kcal/mol (2989.5847 without restraints) Performing minimization step: 3167. Total energy = 2992.7894 kcal/mol (2989.2843 without restraints) Performing minimization step: 3168. Total energy = 2992.4878 kcal/mol (2988.9839 without restraints) Performing minimization step: 3169. Total energy = 2992.1866 kcal/mol (2988.6840 without restraints) Performing minimization step: 3170. Total energy = 2991.8854 kcal/mol (2988.3838 without restraints) Performing minimization step: 3171. Total energy = 2991.5844 kcal/mol (2988.0839 without restraints) Performing minimization step: 3172. Total energy = 2991.2835 kcal/mol (2987.7841 without restraints) Performing minimization step: 3173. Total energy = 2990.9827 kcal/mol (2987.4846 without restraints) Performing minimization step: 3174. Total energy = 2990.6822 kcal/mol (2987.1852 without restraints) Performing minimization step: 3175. Total energy = 2990.3816 kcal/mol (2986.8857 without restraints) Performing minimization step: 3176. Total energy = 2990.0813 kcal/mol (2986.5866 without restraints) Performing minimization step: 3177. Total energy = 2989.7813 kcal/mol (2986.2877 without restraints) Performing minimization step: 3178. Total energy = 2989.4814 kcal/mol (2985.9890 without restraints) Performing minimization step: 3179. Total energy = 2989.1815 kcal/mol (2985.6903 without restraints) Performing minimization step: 3180. Total energy = 2988.8822 kcal/mol (2985.3920 without restraints) Performing minimization step: 3181. Total energy = 2988.5827 kcal/mol (2985.0937 without restraints) Performing minimization step: 3182. Total energy = 2988.2837 kcal/mol (2984.7959 without restraints) Performing minimization step: 3183. Total energy = 2987.9848 kcal/mol (2984.4981 without restraints) Performing minimization step: 3184. Total energy = 2987.6862 kcal/mol (2984.2006 without restraints) Performing minimization step: 3185. Total energy = 2987.3876 kcal/mol (2983.9033 without restraints) Performing minimization step: 3186. Total energy = 2987.0892 kcal/mol (2983.6059 without restraints) Performing minimization step: 3187. Total energy = 2986.7908 kcal/mol (2983.3085 without restraints) Performing minimization step: 3188. Total energy = 2986.4926 kcal/mol (2983.0115 without restraints) Performing minimization step: 3189. Total energy = 2986.1943 kcal/mol (2982.7144 without restraints) Performing minimization step: 3190. Total energy = 2985.8969 kcal/mol (2982.4182 without restraints) Performing minimization step: 3191. Total energy = 2985.5992 kcal/mol (2982.1217 without restraints) Performing minimization step: 3192. Total energy = 2985.3020 kcal/mol (2981.8256 without restraints) Performing minimization step: 3193. Total energy = 2985.0048 kcal/mol (2981.5294 without restraints) Performing minimization step: 3194. Total energy = 2984.7080 kcal/mol (2981.2336 without restraints) Performing minimization step: 3195. Total energy = 2984.4106 kcal/mol (2980.9374 without restraints) Performing minimization step: 3196. Total energy = 2984.1139 kcal/mol (2980.6418 without restraints) Performing minimization step: 3197. Total energy = 2983.8175 kcal/mol (2980.3466 without restraints) Performing minimization step: 3198. Total energy = 2983.5206 kcal/mol (2980.0508 without restraints) Performing minimization step: 3199. Total energy = 2983.2244 kcal/mol (2979.7557 without restraints) Performing minimization step: 3200. Total energy = 2982.9278 kcal/mol (2979.4603 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 2982.6317 kcal/mol (2979.1652 without restraints) Performing minimization step: 3202. Total energy = 2982.3361 kcal/mol (2978.8707 without restraints) Performing minimization step: 3203. Total energy = 2982.0403 kcal/mol (2978.5760 without restraints) Performing minimization step: 3204. Total energy = 2981.7448 kcal/mol (2978.2817 without restraints) Performing minimization step: 3205. Total energy = 2981.4496 kcal/mol (2977.9876 without restraints) Performing minimization step: 3206. Total energy = 2981.1544 kcal/mol (2977.6935 without restraints) Performing minimization step: 3207. Total energy = 2980.8594 kcal/mol (2977.3996 without restraints) Performing minimization step: 3208. Total energy = 2980.5646 kcal/mol (2977.1061 without restraints) Performing minimization step: 3209. Total energy = 2980.2703 kcal/mol (2976.8130 without restraints) Performing minimization step: 3210. Total energy = 2979.9760 kcal/mol (2976.5194 without restraints) Performing minimization step: 3211. Total energy = 2979.6818 kcal/mol (2976.2265 without restraints) Performing minimization step: 3212. Total energy = 2979.3877 kcal/mol (2975.9335 without restraints) Performing minimization step: 3213. Total energy = 2979.0938 kcal/mol (2975.6406 without restraints) Performing minimization step: 3214. Total energy = 2978.8000 kcal/mol (2975.3479 without restraints) Performing minimization step: 3215. Total energy = 2978.5065 kcal/mol (2975.0556 without restraints) Performing minimization step: 3216. Total energy = 2978.2137 kcal/mol (2974.7639 without restraints) Performing minimization step: 3217. Total energy = 2977.9205 kcal/mol (2974.4718 without restraints) Performing minimization step: 3218. Total energy = 2977.6273 kcal/mol (2974.1796 without restraints) Performing minimization step: 3219. Total energy = 2977.3350 kcal/mol (2973.8885 without restraints) Performing minimization step: 3220. Total energy = 2977.0422 kcal/mol (2973.5968 without restraints) Performing minimization step: 3221. Total energy = 2976.7492 kcal/mol (2973.3048 without restraints) Performing minimization step: 3222. Total energy = 2976.4567 kcal/mol (2973.0136 without restraints) Performing minimization step: 3223. Total energy = 2976.1648 kcal/mol (2972.7226 without restraints) Performing minimization step: 3224. Total energy = 2975.8728 kcal/mol (2972.4316 without restraints) Performing minimization step: 3225. Total energy = 2975.5810 kcal/mol (2972.1410 without restraints) Performing minimization step: 3226. Total energy = 2975.2890 kcal/mol (2971.8500 without restraints) Performing minimization step: 3227. Total energy = 2974.9970 kcal/mol (2971.5591 without restraints) Performing minimization step: 3228. Total energy = 2974.7058 kcal/mol (2971.2691 without restraints) Performing minimization step: 3229. Total energy = 2974.4145 kcal/mol (2970.9788 without restraints) Performing minimization step: 3230. Total energy = 2974.1235 kcal/mol (2970.6888 without restraints) Performing minimization step: 3231. Total energy = 2973.8327 kcal/mol (2970.3992 without restraints) Performing minimization step: 3232. Total energy = 2973.5415 kcal/mol (2970.1090 without restraints) Performing minimization step: 3233. Total energy = 2973.2503 kcal/mol (2969.8189 without restraints) Performing minimization step: 3234. Total energy = 2972.9594 kcal/mol (2969.5291 without restraints) Performing minimization step: 3235. Total energy = 2972.6690 kcal/mol (2969.2398 without restraints) Performing minimization step: 3236. Total energy = 2972.3786 kcal/mol (2968.9504 without restraints) Performing minimization step: 3237. Total energy = 2972.0885 kcal/mol (2968.6614 without restraints) Performing minimization step: 3238. Total energy = 2971.7987 kcal/mol (2968.3726 without restraints) Performing minimization step: 3239. Total energy = 2971.5090 kcal/mol (2968.0840 without restraints) Performing minimization step: 3240. Total energy = 2971.2191 kcal/mol (2967.7952 without restraints) Performing minimization step: 3241. Total energy = 2970.9300 kcal/mol (2967.5072 without restraints) Performing minimization step: 3242. Total energy = 2970.6409 kcal/mol (2967.2192 without restraints) Performing minimization step: 3243. Total energy = 2970.3520 kcal/mol (2966.9314 without restraints) Performing minimization step: 3244. Total energy = 2970.0634 kcal/mol (2966.6439 without restraints) Performing minimization step: 3245. Total energy = 2969.7745 kcal/mol (2966.3559 without restraints) Performing minimization step: 3246. Total energy = 2969.4860 kcal/mol (2966.0685 without restraints) Performing minimization step: 3247. Total energy = 2969.1975 kcal/mol (2965.7811 without restraints) Performing minimization step: 3248. Total energy = 2968.9091 kcal/mol (2965.4937 without restraints) Performing minimization step: 3249. Total energy = 2968.6211 kcal/mol (2965.2069 without restraints) Performing minimization step: 3250. Total energy = 2968.3334 kcal/mol (2964.9201 without restraints) Performing minimization step: 3251. Total energy = 2968.0455 kcal/mol (2964.6330 without restraints) Performing minimization step: 3252. Total energy = 2967.7574 kcal/mol (2964.3463 without restraints) Performing minimization step: 3253. Total energy = 2967.4698 kcal/mol (2964.0598 without restraints) Performing minimization step: 3254. Total energy = 2967.1838 kcal/mol (2963.7746 without restraints) Performing minimization step: 3255. Total energy = 2966.8964 kcal/mol (2963.4884 without restraints) Performing minimization step: 3256. Total energy = 2966.6093 kcal/mol (2963.2024 without restraints) Performing minimization step: 3257. Total energy = 2966.3227 kcal/mol (2962.9168 without restraints) Performing minimization step: 3258. Total energy = 2966.0359 kcal/mol (2962.6310 without restraints) Performing minimization step: 3259. Total energy = 2965.7494 kcal/mol (2962.3458 without restraints) Performing minimization step: 3260. Total energy = 2965.4627 kcal/mol (2962.0600 without restraints) Performing minimization step: 3261. Total energy = 2965.1766 kcal/mol (2961.7750 without restraints) Performing minimization step: 3262. Total energy = 2964.8904 kcal/mol (2961.4898 without restraints) Performing minimization step: 3263. Total energy = 2964.6044 kcal/mol (2961.2048 without restraints) Performing minimization step: 3264. Total energy = 2964.3188 kcal/mol (2960.9203 without restraints) Performing minimization step: 3265. Total energy = 2964.0335 kcal/mol (2960.6361 without restraints) Performing minimization step: 3266. Total energy = 2963.7480 kcal/mol (2960.3517 without restraints) Performing minimization step: 3267. Total energy = 2963.4632 kcal/mol (2960.0678 without restraints) Performing minimization step: 3268. Total energy = 2963.1780 kcal/mol (2959.7836 without restraints) Performing minimization step: 3269. Total energy = 2962.8934 kcal/mol (2959.5001 without restraints) Performing minimization step: 3270. Total energy = 2962.6086 kcal/mol (2959.2163 without restraints) Performing minimization step: 3271. Total energy = 2962.3239 kcal/mol (2958.9326 without restraints) Performing minimization step: 3272. Total energy = 2962.0394 kcal/mol (2958.6491 without restraints) Performing minimization step: 3273. Total energy = 2961.7554 kcal/mol (2958.3662 without restraints) Performing minimization step: 3274. Total energy = 2961.4712 kcal/mol (2958.0830 without restraints) Performing minimization step: 3275. Total energy = 2961.1870 kcal/mol (2957.7999 without restraints) Performing minimization step: 3276. Total energy = 2960.9031 kcal/mol (2957.5169 without restraints) Performing minimization step: 3277. Total energy = 2960.6188 kcal/mol (2957.2337 without restraints) Performing minimization step: 3278. Total energy = 2960.3351 kcal/mol (2956.9511 without restraints) Performing minimization step: 3279. Total energy = 2960.0520 kcal/mol (2956.6690 without restraints) Performing minimization step: 3280. Total energy = 2959.7688 kcal/mol (2956.3869 without restraints) Performing minimization step: 3281. Total energy = 2959.4860 kcal/mol (2956.1050 without restraints) Performing minimization step: 3282. Total energy = 2959.2030 kcal/mol (2955.8233 without restraints) Performing minimization step: 3283. Total energy = 2958.9202 kcal/mol (2955.5411 without restraints) Performing minimization step: 3284. Total energy = 2958.6374 kcal/mol (2955.2595 without restraints) Performing minimization step: 3285. Total energy = 2958.3550 kcal/mol (2954.9780 without restraints) Performing minimization step: 3286. Total energy = 2958.0723 kcal/mol (2954.6966 without restraints) Performing minimization step: 3287. Total energy = 2957.7904 kcal/mol (2954.4155 without restraints) Performing minimization step: 3288. Total energy = 2957.5081 kcal/mol (2954.1342 without restraints) Performing minimization step: 3289. Total energy = 2957.2260 kcal/mol (2953.8532 without restraints) Performing minimization step: 3290. Total energy = 2956.9440 kcal/mol (2953.5723 without restraints) Performing minimization step: 3291. Total energy = 2956.6626 kcal/mol (2953.2918 without restraints) Performing minimization step: 3292. Total energy = 2956.3813 kcal/mol (2953.0116 without restraints) Performing minimization step: 3293. Total energy = 2956.1001 kcal/mol (2952.7315 without restraints) Performing minimization step: 3294. Total energy = 2955.8190 kcal/mol (2952.4513 without restraints) Performing minimization step: 3295. Total energy = 2955.5383 kcal/mol (2952.1716 without restraints) Performing minimization step: 3296. Total energy = 2955.2573 kcal/mol (2951.8915 without restraints) Performing minimization step: 3297. Total energy = 2954.9764 kcal/mol (2951.6117 without restraints) Performing minimization step: 3298. Total energy = 2954.6961 kcal/mol (2951.3324 without restraints) Performing minimization step: 3299. Total energy = 2954.4158 kcal/mol (2951.0531 without restraints) Performing minimization step: 3300. Total energy = 2954.1351 kcal/mol (2950.7733 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 2953.8544 kcal/mol (2950.4937 without restraints) Performing minimization step: 3302. Total energy = 2953.5739 kcal/mol (2950.2143 without restraints) Performing minimization step: 3303. Total energy = 2953.2941 kcal/mol (2949.9355 without restraints) Performing minimization step: 3304. Total energy = 2953.0144 kcal/mol (2949.6568 without restraints) Performing minimization step: 3305. Total energy = 2952.7345 kcal/mol (2949.3779 without restraints) Performing minimization step: 3306. Total energy = 2952.4553 kcal/mol (2949.0997 without restraints) Performing minimization step: 3307. Total energy = 2952.1761 kcal/mol (2948.8214 without restraints) Performing minimization step: 3308. Total energy = 2951.8970 kcal/mol (2948.5433 without restraints) Performing minimization step: 3309. Total energy = 2951.6179 kcal/mol (2948.2653 without restraints) Performing minimization step: 3310. Total energy = 2951.3396 kcal/mol (2947.9880 without restraints) Performing minimization step: 3311. Total energy = 2951.0609 kcal/mol (2947.7102 without restraints) Performing minimization step: 3312. Total energy = 2950.7823 kcal/mol (2947.4328 without restraints) Performing minimization step: 3313. Total energy = 2950.5043 kcal/mol (2947.1559 without restraints) Performing minimization step: 3314. Total energy = 2950.2269 kcal/mol (2946.8792 without restraints) Performing minimization step: 3315. Total energy = 2949.9489 kcal/mol (2946.6022 without restraints) Performing minimization step: 3316. Total energy = 2949.6708 kcal/mol (2946.3251 without restraints) Performing minimization step: 3317. Total energy = 2949.3930 kcal/mol (2946.0484 without restraints) Performing minimization step: 3318. Total energy = 2949.1155 kcal/mol (2945.7718 without restraints) Performing minimization step: 3319. Total energy = 2948.8380 kcal/mol (2945.4953 without restraints) Performing minimization step: 3320. Total energy = 2948.5610 kcal/mol (2945.2193 without restraints) Performing minimization step: 3321. Total energy = 2948.2839 kcal/mol (2944.9431 without restraints) Performing minimization step: 3322. Total energy = 2948.0070 kcal/mol (2944.6672 without restraints) Performing minimization step: 3323. Total energy = 2947.7299 kcal/mol (2944.3912 without restraints) Performing minimization step: 3324. Total energy = 2947.4528 kcal/mol (2944.1152 without restraints) Performing minimization step: 3325. Total energy = 2947.1762 kcal/mol (2943.8394 without restraints) Performing minimization step: 3326. Total energy = 2946.8997 kcal/mol (2943.5638 without restraints) Performing minimization step: 3327. Total energy = 2946.6236 kcal/mol (2943.2889 without restraints) Performing minimization step: 3328. Total energy = 2946.3471 kcal/mol (2943.0135 without restraints) Performing minimization step: 3329. Total energy = 2946.0713 kcal/mol (2942.7385 without restraints) Performing minimization step: 3330. Total energy = 2945.7957 kcal/mol (2942.4641 without restraints) Performing minimization step: 3331. Total energy = 2945.5207 kcal/mol (2942.1898 without restraints) Performing minimization step: 3332. Total energy = 2945.2451 kcal/mol (2941.9152 without restraints) Performing minimization step: 3333. Total energy = 2944.9698 kcal/mol (2941.6410 without restraints) Performing minimization step: 3334. Total energy = 2944.6947 kcal/mol (2941.3669 without restraints) Performing minimization step: 3335. Total energy = 2944.4199 kcal/mol (2941.0929 without restraints) Performing minimization step: 3336. Total energy = 2944.1455 kcal/mol (2940.8196 without restraints) Performing minimization step: 3337. Total energy = 2943.8707 kcal/mol (2940.5457 without restraints) Performing minimization step: 3338. Total energy = 2943.5967 kcal/mol (2940.2727 without restraints) Performing minimization step: 3339. Total energy = 2943.3223 kcal/mol (2939.9993 without restraints) Performing minimization step: 3340. Total energy = 2943.0476 kcal/mol (2939.7254 without restraints) Performing minimization step: 3341. Total energy = 2942.7734 kcal/mol (2939.4523 without restraints) Performing minimization step: 3342. Total energy = 2942.4994 kcal/mol (2939.1793 without restraints) Performing minimization step: 3343. Total energy = 2942.2256 kcal/mol (2938.9064 without restraints) Performing minimization step: 3344. Total energy = 2941.9519 kcal/mol (2938.6337 without restraints) Performing minimization step: 3345. Total energy = 2941.6784 kcal/mol (2938.3612 without restraints) Performing minimization step: 3346. Total energy = 2941.4055 kcal/mol (2938.0893 without restraints) Performing minimization step: 3347. Total energy = 2941.1323 kcal/mol (2937.8170 without restraints) Performing minimization step: 3348. Total energy = 2940.8592 kcal/mol (2937.5449 without restraints) Performing minimization step: 3349. Total energy = 2940.5861 kcal/mol (2937.2727 without restraints) Performing minimization step: 3350. Total energy = 2940.3133 kcal/mol (2937.0009 without restraints) Performing minimization step: 3351. Total energy = 2940.0404 kcal/mol (2936.7290 without restraints) Performing minimization step: 3352. Total energy = 2939.7678 kcal/mol (2936.4573 without restraints) Performing minimization step: 3353. Total energy = 2939.4955 kcal/mol (2936.1860 without restraints) Performing minimization step: 3354. Total energy = 2939.2231 kcal/mol (2935.9146 without restraints) Performing minimization step: 3355. Total energy = 2938.9507 kcal/mol (2935.6431 without restraints) Performing minimization step: 3356. Total energy = 2938.6786 kcal/mol (2935.3720 without restraints) Performing minimization step: 3357. Total energy = 2938.4069 kcal/mol (2935.1012 without restraints) Performing minimization step: 3358. Total energy = 2938.1350 kcal/mol (2934.8303 without restraints) Performing minimization step: 3359. Total energy = 2937.8639 kcal/mol (2934.5601 without restraints) Performing minimization step: 3360. Total energy = 2937.5926 kcal/mol (2934.2898 without restraints) Performing minimization step: 3361. Total energy = 2937.3209 kcal/mol (2934.0191 without restraints) Performing minimization step: 3362. Total energy = 2937.0499 kcal/mol (2933.7491 without restraints) Performing minimization step: 3363. Total energy = 2936.7791 kcal/mol (2933.4793 without restraints) Performing minimization step: 3364. Total energy = 2936.5087 kcal/mol (2933.2098 without restraints) Performing minimization step: 3365. Total energy = 2936.2380 kcal/mol (2932.9400 without restraints) Performing minimization step: 3366. Total energy = 2935.9676 kcal/mol (2932.6706 without restraints) Performing minimization step: 3367. Total energy = 2935.6976 kcal/mol (2932.4015 without restraints) Performing minimization step: 3368. Total energy = 2935.4275 kcal/mol (2932.1323 without restraints) Performing minimization step: 3369. Total energy = 2935.1571 kcal/mol (2931.8628 without restraints) Performing minimization step: 3370. Total energy = 2934.8872 kcal/mol (2931.5940 without restraints) Performing minimization step: 3371. Total energy = 2934.6176 kcal/mol (2931.3253 without restraints) Performing minimization step: 3372. Total energy = 2934.3477 kcal/mol (2931.0564 without restraints) Performing minimization step: 3373. Total energy = 2934.0779 kcal/mol (2930.7876 without restraints) Performing minimization step: 3374. Total energy = 2933.8091 kcal/mol (2930.5196 without restraints) Performing minimization step: 3375. Total energy = 2933.5399 kcal/mol (2930.2514 without restraints) Performing minimization step: 3376. Total energy = 2933.2716 kcal/mol (2929.9841 without restraints) Performing minimization step: 3377. Total energy = 2933.0027 kcal/mol (2929.7161 without restraints) Performing minimization step: 3378. Total energy = 2932.7346 kcal/mol (2929.4489 without restraints) Performing minimization step: 3379. Total energy = 2932.4662 kcal/mol (2929.1814 without restraints) Performing minimization step: 3380. Total energy = 2932.1981 kcal/mol (2928.9143 without restraints) Performing minimization step: 3381. Total energy = 2931.9301 kcal/mol (2928.6473 without restraints) Performing minimization step: 3382. Total energy = 2931.6620 kcal/mol (2928.3801 without restraints) Performing minimization step: 3383. Total energy = 2931.3944 kcal/mol (2928.1134 without restraints) Performing minimization step: 3384. Total energy = 2931.1266 kcal/mol (2927.8465 without restraints) Performing minimization step: 3385. Total energy = 2930.8590 kcal/mol (2927.5799 without restraints) Performing minimization step: 3386. Total energy = 2930.5916 kcal/mol (2927.3134 without restraints) Performing minimization step: 3387. Total energy = 2930.3242 kcal/mol (2927.0471 without restraints) Performing minimization step: 3388. Total energy = 2930.0573 kcal/mol (2926.7809 without restraints) Performing minimization step: 3389. Total energy = 2929.7904 kcal/mol (2926.5150 without restraints) Performing minimization step: 3390. Total energy = 2929.5235 kcal/mol (2926.2489 without restraints) Performing minimization step: 3391. Total energy = 2929.2571 kcal/mol (2925.9836 without restraints) Performing minimization step: 3392. Total energy = 2928.9905 kcal/mol (2925.7179 without restraints) Performing minimization step: 3393. Total energy = 2928.7242 kcal/mol (2925.4526 without restraints) Performing minimization step: 3394. Total energy = 2928.4578 kcal/mol (2925.1871 without restraints) Performing minimization step: 3395. Total energy = 2928.1920 kcal/mol (2924.9222 without restraints) Performing minimization step: 3396. Total energy = 2927.9266 kcal/mol (2924.6577 without restraints) Performing minimization step: 3397. Total energy = 2927.6612 kcal/mol (2924.3932 without restraints) Performing minimization step: 3398. Total energy = 2927.3956 kcal/mol (2924.1288 without restraints) Performing minimization step: 3399. Total energy = 2927.1301 kcal/mol (2923.8640 without restraints) Performing minimization step: 3400. Total energy = 2926.8644 kcal/mol (2923.5992 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 2926.5994 kcal/mol (2923.3352 without restraints) Performing minimization step: 3402. Total energy = 2926.3348 kcal/mol (2923.0715 without restraints) Performing minimization step: 3403. Total energy = 2926.0699 kcal/mol (2922.8075 without restraints) Performing minimization step: 3404. Total energy = 2925.8054 kcal/mol (2922.5440 without restraints) Performing minimization step: 3405. Total energy = 2925.5415 kcal/mol (2922.2811 without restraints) Performing minimization step: 3406. Total energy = 2925.2772 kcal/mol (2922.0176 without restraints) Performing minimization step: 3407. Total energy = 2925.0129 kcal/mol (2921.7543 without restraints) Performing minimization step: 3408. Total energy = 2924.7489 kcal/mol (2921.4911 without restraints) Performing minimization step: 3409. Total energy = 2924.4848 kcal/mol (2921.2280 without restraints) Performing minimization step: 3410. Total energy = 2924.2210 kcal/mol (2920.9651 without restraints) Performing minimization step: 3411. Total energy = 2923.9575 kcal/mol (2920.7025 without restraints) Performing minimization step: 3412. Total energy = 2923.6936 kcal/mol (2920.4396 without restraints) Performing minimization step: 3413. Total energy = 2923.4305 kcal/mol (2920.1772 without restraints) Performing minimization step: 3414. Total energy = 2923.1674 kcal/mol (2919.9153 without restraints) Performing minimization step: 3415. Total energy = 2922.9044 kcal/mol (2919.6532 without restraints) Performing minimization step: 3416. Total energy = 2922.6413 kcal/mol (2919.3909 without restraints) Performing minimization step: 3417. Total energy = 2922.3782 kcal/mol (2919.1287 without restraints) Performing minimization step: 3418. Total energy = 2922.1157 kcal/mol (2918.8672 without restraints) Performing minimization step: 3419. Total energy = 2921.8533 kcal/mol (2918.6058 without restraints) Performing minimization step: 3420. Total energy = 2921.5910 kcal/mol (2918.3443 without restraints) Performing minimization step: 3421. Total energy = 2921.3289 kcal/mol (2918.0831 without restraints) Performing minimization step: 3422. Total energy = 2921.0669 kcal/mol (2917.8220 without restraints) Performing minimization step: 3423. Total energy = 2920.8050 kcal/mol (2917.5611 without restraints) Performing minimization step: 3424. Total energy = 2920.5433 kcal/mol (2917.3003 without restraints) Performing minimization step: 3425. Total energy = 2920.2816 kcal/mol (2917.0395 without restraints) Performing minimization step: 3426. Total energy = 2920.0203 kcal/mol (2916.7792 without restraints) Performing minimization step: 3427. Total energy = 2919.7592 kcal/mol (2916.5189 without restraints) Performing minimization step: 3428. Total energy = 2919.4982 kcal/mol (2916.2588 without restraints) Performing minimization step: 3429. Total energy = 2919.2371 kcal/mol (2915.9986 without restraints) Performing minimization step: 3430. Total energy = 2918.9763 kcal/mol (2915.7387 without restraints) Performing minimization step: 3431. Total energy = 2918.7161 kcal/mol (2915.4795 without restraints) Performing minimization step: 3432. Total energy = 2918.4560 kcal/mol (2915.2203 without restraints) Performing minimization step: 3433. Total energy = 2918.1955 kcal/mol (2914.9606 without restraints) Performing minimization step: 3434. Total energy = 2917.9352 kcal/mol (2914.7013 without restraints) Performing minimization step: 3435. Total energy = 2917.6748 kcal/mol (2914.4417 without restraints) Performing minimization step: 3436. Total energy = 2917.4147 kcal/mol (2914.1825 without restraints) Performing minimization step: 3437. Total energy = 2917.1547 kcal/mol (2913.9234 without restraints) Performing minimization step: 3438. Total energy = 2916.8949 kcal/mol (2913.6645 without restraints) Performing minimization step: 3439. Total energy = 2916.6352 kcal/mol (2913.4058 without restraints) Performing minimization step: 3440. Total energy = 2916.3759 kcal/mol (2913.1474 without restraints) Performing minimization step: 3441. Total energy = 2916.1172 kcal/mol (2912.8896 without restraints) Performing minimization step: 3442. Total energy = 2915.8579 kcal/mol (2912.6310 without restraints) Performing minimization step: 3443. Total energy = 2915.5989 kcal/mol (2912.3730 without restraints) Performing minimization step: 3444. Total energy = 2915.3399 kcal/mol (2912.1150 without restraints) Performing minimization step: 3445. Total energy = 2915.0812 kcal/mol (2911.8572 without restraints) Performing minimization step: 3446. Total energy = 2914.8228 kcal/mol (2911.5997 without restraints) Performing minimization step: 3447. Total energy = 2914.5647 kcal/mol (2911.3424 without restraints) Performing minimization step: 3448. Total energy = 2914.3068 kcal/mol (2911.0854 without restraints) Performing minimization step: 3449. Total energy = 2914.0489 kcal/mol (2910.8285 without restraints) Performing minimization step: 3450. Total energy = 2913.7907 kcal/mol (2910.5711 without restraints) Performing minimization step: 3451. Total energy = 2913.5329 kcal/mol (2910.3141 without restraints) Performing minimization step: 3452. Total energy = 2913.2755 kcal/mol (2910.0577 without restraints) Performing minimization step: 3453. Total energy = 2913.0181 kcal/mol (2909.8013 without restraints) Performing minimization step: 3454. Total energy = 2912.7612 kcal/mol (2909.5456 without restraints) Performing minimization step: 3455. Total energy = 2912.5040 kcal/mol (2909.2887 without restraints) Performing minimization step: 3456. Total energy = 2912.2473 kcal/mol (2909.0331 without restraints) Performing minimization step: 3457. Total energy = 2911.9904 kcal/mol (2908.7771 without restraints) Performing minimization step: 3458. Total energy = 2911.7341 kcal/mol (2908.5217 without restraints) Performing minimization step: 3459. Total energy = 2911.4774 kcal/mol (2908.2659 without restraints) Performing minimization step: 3460. Total energy = 2911.2212 kcal/mol (2908.0107 without restraints) Performing minimization step: 3461. Total energy = 2910.9653 kcal/mol (2907.7554 without restraints) Performing minimization step: 3462. Total energy = 2910.7092 kcal/mol (2907.5004 without restraints) Performing minimization step: 3463. Total energy = 2910.4537 kcal/mol (2907.2458 without restraints) Performing minimization step: 3464. Total energy = 2910.1978 kcal/mol (2906.9907 without restraints) Performing minimization step: 3465. Total energy = 2909.9425 kcal/mol (2906.7365 without restraints) Performing minimization step: 3466. Total energy = 2909.6873 kcal/mol (2906.4820 without restraints) Performing minimization step: 3467. Total energy = 2909.4324 kcal/mol (2906.2280 without restraints) Performing minimization step: 3468. Total energy = 2909.1772 kcal/mol (2905.9737 without restraints) Performing minimization step: 3469. Total energy = 2908.9221 kcal/mol (2905.7194 without restraints) Performing minimization step: 3470. Total energy = 2908.6672 kcal/mol (2905.4654 without restraints) Performing minimization step: 3471. Total energy = 2908.4124 kcal/mol (2905.2114 without restraints) Performing minimization step: 3472. Total energy = 2908.1577 kcal/mol (2904.9578 without restraints) Performing minimization step: 3473. Total energy = 2907.9031 kcal/mol (2904.7039 without restraints) Performing minimization step: 3474. Total energy = 2907.6488 kcal/mol (2904.4506 without restraints) Performing minimization step: 3475. Total energy = 2907.3947 kcal/mol (2904.1974 without restraints) Performing minimization step: 3476. Total energy = 2907.1407 kcal/mol (2903.9443 without restraints) Performing minimization step: 3477. Total energy = 2906.8870 kcal/mol (2903.6915 without restraints) Performing minimization step: 3478. Total energy = 2906.6335 kcal/mol (2903.4389 without restraints) Performing minimization step: 3479. Total energy = 2906.3798 kcal/mol (2903.1860 without restraints) Performing minimization step: 3480. Total energy = 2906.1264 kcal/mol (2902.9334 without restraints) Performing minimization step: 3481. Total energy = 2905.8731 kcal/mol (2902.6811 without restraints) Performing minimization step: 3482. Total energy = 2905.6200 kcal/mol (2902.4287 without restraints) Performing minimization step: 3483. Total energy = 2905.3666 kcal/mol (2902.1762 without restraints) Performing minimization step: 3484. Total energy = 2905.1137 kcal/mol (2901.9243 without restraints) Performing minimization step: 3485. Total energy = 2904.8608 kcal/mol (2901.6722 without restraints) Performing minimization step: 3486. Total energy = 2904.6085 kcal/mol (2901.4209 without restraints) Performing minimization step: 3487. Total energy = 2904.3562 kcal/mol (2901.1693 without restraints) Performing minimization step: 3488. Total energy = 2904.1044 kcal/mol (2900.9185 without restraints) Performing minimization step: 3489. Total energy = 2903.8524 kcal/mol (2900.6674 without restraints) Performing minimization step: 3490. Total energy = 2903.6008 kcal/mol (2900.4167 without restraints) Performing minimization step: 3491. Total energy = 2903.3493 kcal/mol (2900.1661 without restraints) Performing minimization step: 3492. Total energy = 2903.0980 kcal/mol (2899.9155 without restraints) Performing minimization step: 3493. Total energy = 2902.8467 kcal/mol (2899.6652 without restraints) Performing minimization step: 3494. Total energy = 2902.5951 kcal/mol (2899.4144 without restraints) Performing minimization step: 3495. Total energy = 2902.3439 kcal/mol (2899.1642 without restraints) Performing minimization step: 3496. Total energy = 2902.0925 kcal/mol (2898.9135 without restraints) Performing minimization step: 3497. Total energy = 2901.8416 kcal/mol (2898.6636 without restraints) Performing minimization step: 3498. Total energy = 2901.5912 kcal/mol (2898.4141 without restraints) Performing minimization step: 3499. Total energy = 2901.3407 kcal/mol (2898.1643 without restraints) Performing minimization step: 3500. Total energy = 2901.0902 kcal/mol (2897.9148 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 2900.8397 kcal/mol (2897.6652 without restraints) Performing minimization step: 3502. Total energy = 2900.5898 kcal/mol (2897.4160 without restraints) Performing minimization step: 3503. Total energy = 2900.3397 kcal/mol (2897.1669 without restraints) Performing minimization step: 3504. Total energy = 2900.0900 kcal/mol (2896.9180 without restraints) Performing minimization step: 3505. Total energy = 2899.8405 kcal/mol (2896.6694 without restraints) Performing minimization step: 3506. Total energy = 2899.5912 kcal/mol (2896.4210 without restraints) Performing minimization step: 3507. Total energy = 2899.3415 kcal/mol (2896.1722 without restraints) Performing minimization step: 3508. Total energy = 2899.0923 kcal/mol (2895.9238 without restraints) Performing minimization step: 3509. Total energy = 2898.8435 kcal/mol (2895.6760 without restraints) Performing minimization step: 3510. Total energy = 2898.5949 kcal/mol (2895.4281 without restraints) Performing minimization step: 3511. Total energy = 2898.3462 kcal/mol (2895.1804 without restraints) Performing minimization step: 3512. Total energy = 2898.0978 kcal/mol (2894.9329 without restraints) Performing minimization step: 3513. Total energy = 2897.8495 kcal/mol (2894.6854 without restraints) Performing minimization step: 3514. Total energy = 2897.6015 kcal/mol (2894.4382 without restraints) Performing minimization step: 3515. Total energy = 2897.3537 kcal/mol (2894.1915 without restraints) Performing minimization step: 3516. Total energy = 2897.1060 kcal/mol (2893.9444 without restraints) Performing minimization step: 3517. Total energy = 2896.8580 kcal/mol (2893.6974 without restraints) Performing minimization step: 3518. Total energy = 2896.6104 kcal/mol (2893.4505 without restraints) Performing minimization step: 3519. Total energy = 2896.3629 kcal/mol (2893.2041 without restraints) Performing minimization step: 3520. Total energy = 2896.1156 kcal/mol (2892.9575 without restraints) Performing minimization step: 3521. Total energy = 2895.8684 kcal/mol (2892.7112 without restraints) Performing minimization step: 3522. Total energy = 2895.6214 kcal/mol (2892.4651 without restraints) Performing minimization step: 3523. Total energy = 2895.3749 kcal/mol (2892.2195 without restraints) Performing minimization step: 3524. Total energy = 2895.1283 kcal/mol (2891.9736 without restraints) Performing minimization step: 3525. Total energy = 2894.8820 kcal/mol (2891.7284 without restraints) Performing minimization step: 3526. Total energy = 2894.6358 kcal/mol (2891.4829 without restraints) Performing minimization step: 3527. Total energy = 2894.3899 kcal/mol (2891.2379 without restraints) Performing minimization step: 3528. Total energy = 2894.1441 kcal/mol (2890.9929 without restraints) Performing minimization step: 3529. Total energy = 2893.8984 kcal/mol (2890.7479 without restraints) Performing minimization step: 3530. Total energy = 2893.6529 kcal/mol (2890.5034 without restraints) Performing minimization step: 3531. Total energy = 2893.4074 kcal/mol (2890.2588 without restraints) Performing minimization step: 3532. Total energy = 2893.1619 kcal/mol (2890.0142 without restraints) Performing minimization step: 3533. Total energy = 2892.9169 kcal/mol (2889.7700 without restraints) Performing minimization step: 3534. Total energy = 2892.6718 kcal/mol (2889.5257 without restraints) Performing minimization step: 3535. Total energy = 2892.4268 kcal/mol (2889.2815 without restraints) Performing minimization step: 3536. Total energy = 2892.1813 kcal/mol (2889.0369 without restraints) Performing minimization step: 3537. Total energy = 2891.9369 kcal/mol (2888.7938 without restraints) Performing minimization step: 3538. Total energy = 2891.6928 kcal/mol (2888.5500 without restraints) Performing minimization step: 3539. Total energy = 2891.4476 kcal/mol (2888.3059 without restraints) Performing minimization step: 3540. Total energy = 2891.2038 kcal/mol (2888.0628 without restraints) Performing minimization step: 3541. Total energy = 2890.9601 kcal/mol (2887.8200 without restraints) Performing minimization step: 3542. Total energy = 2890.7165 kcal/mol (2887.5773 without restraints) Performing minimization step: 3543. Total energy = 2890.4728 kcal/mol (2887.3344 without restraints) Performing minimization step: 3544. Total energy = 2890.2288 kcal/mol (2887.0913 without restraints) Performing minimization step: 3545. Total energy = 2889.9854 kcal/mol (2886.8487 without restraints) Performing minimization step: 3546. Total energy = 2889.7421 kcal/mol (2886.6063 without restraints) Performing minimization step: 3547. Total energy = 2889.4989 kcal/mol (2886.3639 without restraints) Performing minimization step: 3548. Total energy = 2889.2558 kcal/mol (2886.1217 without restraints) Performing minimization step: 3549. Total energy = 2889.0132 kcal/mol (2885.8799 without restraints) Performing minimization step: 3550. Total energy = 2888.7703 kcal/mol (2885.6380 without restraints) Performing minimization step: 3551. Total energy = 2888.5285 kcal/mol (2885.3969 without restraints) Performing minimization step: 3552. Total energy = 2888.2859 kcal/mol (2885.1552 without restraints) Performing minimization step: 3553. Total energy = 2888.0440 kcal/mol (2884.9141 without restraints) Performing minimization step: 3554. Total energy = 2887.8021 kcal/mol (2884.6731 without restraints) Performing minimization step: 3555. Total energy = 2887.5604 kcal/mol (2884.4323 without restraints) Performing minimization step: 3556. Total energy = 2887.3186 kcal/mol (2884.1913 without restraints) Performing minimization step: 3557. Total energy = 2887.0773 kcal/mol (2883.9508 without restraints) Performing minimization step: 3558. Total energy = 2886.8355 kcal/mol (2883.7099 without restraints) Performing minimization step: 3559. Total energy = 2886.5944 kcal/mol (2883.4695 without restraints) Performing minimization step: 3560. Total energy = 2886.3529 kcal/mol (2883.2289 without restraints) Performing minimization step: 3561. Total energy = 2886.1116 kcal/mol (2882.9885 without restraints) Performing minimization step: 3562. Total energy = 2885.8710 kcal/mol (2882.7487 without restraints) Performing minimization step: 3563. Total energy = 2885.6302 kcal/mol (2882.5088 without restraints) Performing minimization step: 3564. Total energy = 2885.3898 kcal/mol (2882.2692 without restraints) Performing minimization step: 3565. Total energy = 2885.1493 kcal/mol (2882.0296 without restraints) Performing minimization step: 3566. Total energy = 2884.9086 kcal/mol (2881.7896 without restraints) Performing minimization step: 3567. Total energy = 2884.6684 kcal/mol (2881.5503 without restraints) Performing minimization step: 3568. Total energy = 2884.4282 kcal/mol (2881.3109 without restraints) Performing minimization step: 3569. Total energy = 2884.1883 kcal/mol (2881.0720 without restraints) Performing minimization step: 3570. Total energy = 2883.9487 kcal/mol (2880.8332 without restraints) Performing minimization step: 3571. Total energy = 2883.7094 kcal/mol (2880.5947 without restraints) Performing minimization step: 3572. Total energy = 2883.4698 kcal/mol (2880.3559 without restraints) Performing minimization step: 3573. Total energy = 2883.2302 kcal/mol (2880.1172 without restraints) Performing minimization step: 3574. Total energy = 2882.9912 kcal/mol (2879.8790 without restraints) Performing minimization step: 3575. Total energy = 2882.7525 kcal/mol (2879.6412 without restraints) Performing minimization step: 3576. Total energy = 2882.5137 kcal/mol (2879.4032 without restraints) Performing minimization step: 3577. Total energy = 2882.2750 kcal/mol (2879.1654 without restraints) Performing minimization step: 3578. Total energy = 2882.0367 kcal/mol (2878.9279 without restraints) Performing minimization step: 3579. Total energy = 2881.7983 kcal/mol (2878.6905 without restraints) Performing minimization step: 3580. Total energy = 2881.5604 kcal/mol (2878.4533 without restraints) Performing minimization step: 3581. Total energy = 2881.3229 kcal/mol (2878.2166 without restraints) Performing minimization step: 3582. Total energy = 2881.0850 kcal/mol (2877.9795 without restraints) Performing minimization step: 3583. Total energy = 2880.8470 kcal/mol (2877.7424 without restraints) Performing minimization step: 3584. Total energy = 2880.6096 kcal/mol (2877.5059 without restraints) Performing minimization step: 3585. Total energy = 2880.3723 kcal/mol (2877.2693 without restraints) Performing minimization step: 3586. Total energy = 2880.1351 kcal/mol (2877.0330 without restraints) Performing minimization step: 3587. Total energy = 2879.8980 kcal/mol (2876.7968 without restraints) Performing minimization step: 3588. Total energy = 2879.6611 kcal/mol (2876.5608 without restraints) Performing minimization step: 3589. Total energy = 2879.4243 kcal/mol (2876.3245 without restraints) Performing minimization step: 3590. Total energy = 2879.1871 kcal/mol (2876.0883 without restraints) Performing minimization step: 3591. Total energy = 2878.9504 kcal/mol (2875.8524 without restraints) Performing minimization step: 3592. Total energy = 2878.7142 kcal/mol (2875.6171 without restraints) Performing minimization step: 3593. Total energy = 2878.4780 kcal/mol (2875.3819 without restraints) Performing minimization step: 3594. Total energy = 2878.2422 kcal/mol (2875.1468 without restraints) Performing minimization step: 3595. Total energy = 2878.0065 kcal/mol (2874.9119 without restraints) Performing minimization step: 3596. Total energy = 2877.7712 kcal/mol (2874.6775 without restraints) Performing minimization step: 3597. Total energy = 2877.5361 kcal/mol (2874.4431 without restraints) Performing minimization step: 3598. Total energy = 2877.3010 kcal/mol (2874.2089 without restraints) Performing minimization step: 3599. Total energy = 2877.0661 kcal/mol (2873.9749 without restraints) Performing minimization step: 3600. Total energy = 2876.8314 kcal/mol (2873.7409 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 2876.5963 kcal/mol (2873.5068 without restraints) Performing minimization step: 3602. Total energy = 2876.3617 kcal/mol (2873.2728 without restraints) Performing minimization step: 3603. Total energy = 2876.1269 kcal/mol (2873.0389 without restraints) Performing minimization step: 3604. Total energy = 2875.8922 kcal/mol (2872.8050 without restraints) Performing minimization step: 3605. Total energy = 2875.6578 kcal/mol (2872.5715 without restraints) Performing minimization step: 3606. Total energy = 2875.4236 kcal/mol (2872.3382 without restraints) Performing minimization step: 3607. Total energy = 2875.1897 kcal/mol (2872.1051 without restraints) Performing minimization step: 3608. Total energy = 2874.9554 kcal/mol (2871.8716 without restraints) Performing minimization step: 3609. Total energy = 2874.7215 kcal/mol (2871.6384 without restraints) Performing minimization step: 3610. Total energy = 2874.4876 kcal/mol (2871.4054 without restraints) Performing minimization step: 3611. Total energy = 2874.2541 kcal/mol (2871.1729 without restraints) Performing minimization step: 3612. Total energy = 2874.0208 kcal/mol (2870.9403 without restraints) Performing minimization step: 3613. Total energy = 2873.7875 kcal/mol (2870.7078 without restraints) Performing minimization step: 3614. Total energy = 2873.5542 kcal/mol (2870.4755 without restraints) Performing minimization step: 3615. Total energy = 2873.3213 kcal/mol (2870.2433 without restraints) Performing minimization step: 3616. Total energy = 2873.0892 kcal/mol (2870.0121 without restraints) Performing minimization step: 3617. Total energy = 2872.8566 kcal/mol (2869.7802 without restraints) Performing minimization step: 3618. Total energy = 2872.6243 kcal/mol (2869.5488 without restraints) Performing minimization step: 3619. Total energy = 2872.3918 kcal/mol (2869.3170 without restraints) Performing minimization step: 3620. Total energy = 2872.1597 kcal/mol (2869.0858 without restraints) Performing minimization step: 3621. Total energy = 2871.9277 kcal/mol (2868.8547 without restraints) Performing minimization step: 3622. Total energy = 2871.6958 kcal/mol (2868.6235 without restraints) Performing minimization step: 3623. Total energy = 2871.4639 kcal/mol (2868.3925 without restraints) Performing minimization step: 3624. Total energy = 2871.2322 kcal/mol (2868.1617 without restraints) Performing minimization step: 3625. Total energy = 2871.0010 kcal/mol (2867.9313 without restraints) Performing minimization step: 3626. Total energy = 2870.7695 kcal/mol (2867.7006 without restraints) Performing minimization step: 3627. Total energy = 2870.5389 kcal/mol (2867.4708 without restraints) Performing minimization step: 3628. Total energy = 2870.3077 kcal/mol (2867.2405 without restraints) Performing minimization step: 3629. Total energy = 2870.0769 kcal/mol (2867.0105 without restraints) Performing minimization step: 3630. Total energy = 2869.8464 kcal/mol (2866.7809 without restraints) Performing minimization step: 3631. Total energy = 2869.6159 kcal/mol (2866.5511 without restraints) Performing minimization step: 3632. Total energy = 2869.3853 kcal/mol (2866.3214 without restraints) Performing minimization step: 3633. Total energy = 2869.1548 kcal/mol (2866.0917 without restraints) Performing minimization step: 3634. Total energy = 2868.9247 kcal/mol (2865.8626 without restraints) Performing minimization step: 3635. Total energy = 2868.6949 kcal/mol (2865.6334 without restraints) Performing minimization step: 3636. Total energy = 2868.4651 kcal/mol (2865.4044 without restraints) Performing minimization step: 3637. Total energy = 2868.2355 kcal/mol (2865.1754 without restraints) Performing minimization step: 3638. Total energy = 2868.0058 kcal/mol (2864.9467 without restraints) Performing minimization step: 3639. Total energy = 2867.7766 kcal/mol (2864.7184 without restraints) Performing minimization step: 3640. Total energy = 2867.5474 kcal/mol (2864.4900 without restraints) Performing minimization step: 3641. Total energy = 2867.3184 kcal/mol (2864.2617 without restraints) Performing minimization step: 3642. Total energy = 2867.0892 kcal/mol (2864.0334 without restraints) Performing minimization step: 3643. Total energy = 2866.8606 kcal/mol (2863.8057 without restraints) Performing minimization step: 3644. Total energy = 2866.6320 kcal/mol (2863.5779 without restraints) Performing minimization step: 3645. Total energy = 2866.4035 kcal/mol (2863.3502 without restraints) Performing minimization step: 3646. Total energy = 2866.1750 kcal/mol (2863.1225 without restraints) Performing minimization step: 3647. Total energy = 2865.9468 kcal/mol (2862.8952 without restraints) Performing minimization step: 3648. Total energy = 2865.7190 kcal/mol (2862.6682 without restraints) Performing minimization step: 3649. Total energy = 2865.4913 kcal/mol (2862.4413 without restraints) Performing minimization step: 3650. Total energy = 2865.2637 kcal/mol (2862.2144 without restraints) Performing minimization step: 3651. Total energy = 2865.0361 kcal/mol (2861.9877 without restraints) Performing minimization step: 3652. Total energy = 2864.8092 kcal/mol (2861.7616 without restraints) Performing minimization step: 3653. Total energy = 2864.5823 kcal/mol (2861.5358 without restraints) Performing minimization step: 3654. Total energy = 2864.3554 kcal/mol (2861.3094 without restraints) Performing minimization step: 3655. Total energy = 2864.1288 kcal/mol (2861.0836 without restraints) Performing minimization step: 3656. Total energy = 2863.9021 kcal/mol (2860.8578 without restraints) Performing minimization step: 3657. Total energy = 2863.6752 kcal/mol (2860.6317 without restraints) Performing minimization step: 3658. Total energy = 2863.4489 kcal/mol (2860.4063 without restraints) Performing minimization step: 3659. Total energy = 2863.2224 kcal/mol (2860.1806 without restraints) Performing minimization step: 3660. Total energy = 2862.9963 kcal/mol (2859.9552 without restraints) Performing minimization step: 3661. Total energy = 2862.7705 kcal/mol (2859.7302 without restraints) Performing minimization step: 3662. Total energy = 2862.5447 kcal/mol (2859.5053 without restraints) Performing minimization step: 3663. Total energy = 2862.3189 kcal/mol (2859.2803 without restraints) Performing minimization step: 3664. Total energy = 2862.0933 kcal/mol (2859.0555 without restraints) Performing minimization step: 3665. Total energy = 2861.8680 kcal/mol (2858.8310 without restraints) Performing minimization step: 3666. Total energy = 2861.6424 kcal/mol (2858.6062 without restraints) Performing minimization step: 3667. Total energy = 2861.4180 kcal/mol (2858.3827 without restraints) Performing minimization step: 3668. Total energy = 2861.1928 kcal/mol (2858.1583 without restraints) Performing minimization step: 3669. Total energy = 2860.9683 kcal/mol (2857.9347 without restraints) Performing minimization step: 3670. Total energy = 2860.7435 kcal/mol (2857.7107 without restraints) Performing minimization step: 3671. Total energy = 2860.5194 kcal/mol (2857.4873 without restraints) Performing minimization step: 3672. Total energy = 2860.2950 kcal/mol (2857.2637 without restraints) Performing minimization step: 3673. Total energy = 2860.0707 kcal/mol (2857.0402 without restraints) Performing minimization step: 3674. Total energy = 2859.8463 kcal/mol (2856.8166 without restraints) Performing minimization step: 3675. Total energy = 2859.6228 kcal/mol (2856.5940 without restraints) Performing minimization step: 3676. Total energy = 2859.3988 kcal/mol (2856.3707 without restraints) Performing minimization step: 3677. Total energy = 2859.1752 kcal/mol (2856.1481 without restraints) Performing minimization step: 3678. Total energy = 2858.9522 kcal/mol (2855.9257 without restraints) Performing minimization step: 3679. Total energy = 2858.7284 kcal/mol (2855.7027 without restraints) Performing minimization step: 3680. Total energy = 2858.5050 kcal/mol (2855.4802 without restraints) Performing minimization step: 3681. Total energy = 2858.2823 kcal/mol (2855.2582 without restraints) Performing minimization step: 3682. Total energy = 2858.0592 kcal/mol (2855.0361 without restraints) Performing minimization step: 3683. Total energy = 2857.8360 kcal/mol (2854.8136 without restraints) Performing minimization step: 3684. Total energy = 2857.6135 kcal/mol (2854.5919 without restraints) Performing minimization step: 3685. Total energy = 2857.3908 kcal/mol (2854.3697 without restraints) Performing minimization step: 3686. Total energy = 2857.1679 kcal/mol (2854.1480 without restraints) Performing minimization step: 3687. Total energy = 2856.9463 kcal/mol (2853.9270 without restraints) Performing minimization step: 3688. Total energy = 2856.7240 kcal/mol (2853.7055 without restraints) Performing minimization step: 3689. Total energy = 2856.5016 kcal/mol (2853.4841 without restraints) Performing minimization step: 3690. Total energy = 2856.2797 kcal/mol (2853.2630 without restraints) Performing minimization step: 3691. Total energy = 2856.0582 kcal/mol (2853.0423 without restraints) Performing minimization step: 3692. Total energy = 2855.8367 kcal/mol (2852.8216 without restraints) Performing minimization step: 3693. Total energy = 2855.6157 kcal/mol (2852.6015 without restraints) Performing minimization step: 3694. Total energy = 2855.3945 kcal/mol (2852.3810 without restraints) Performing minimization step: 3695. Total energy = 2855.1734 kcal/mol (2852.1607 without restraints) Performing minimization step: 3696. Total energy = 2854.9529 kcal/mol (2851.9410 without restraints) Performing minimization step: 3697. Total energy = 2854.7321 kcal/mol (2851.7210 without restraints) Performing minimization step: 3698. Total energy = 2854.5115 kcal/mol (2851.5013 without restraints) Performing minimization step: 3699. Total energy = 2854.2910 kcal/mol (2851.2816 without restraints) Performing minimization step: 3700. Total energy = 2854.0707 kcal/mol (2851.0621 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 2853.8508 kcal/mol (2850.8429 without restraints) Performing minimization step: 3702. Total energy = 2853.6307 kcal/mol (2850.6237 without restraints) Performing minimization step: 3703. Total energy = 2853.4110 kcal/mol (2850.4048 without restraints) Performing minimization step: 3704. Total energy = 2853.1910 kcal/mol (2850.1854 without restraints) Performing minimization step: 3705. Total energy = 2852.9710 kcal/mol (2849.9664 without restraints) Performing minimization step: 3706. Total energy = 2852.7513 kcal/mol (2849.7475 without restraints) Performing minimization step: 3707. Total energy = 2852.5320 kcal/mol (2849.5289 without restraints) Performing minimization step: 3708. Total energy = 2852.3132 kcal/mol (2849.3110 without restraints) Performing minimization step: 3709. Total energy = 2852.0943 kcal/mol (2849.0929 without restraints) Performing minimization step: 3710. Total energy = 2851.8753 kcal/mol (2848.8748 without restraints) Performing minimization step: 3711. Total energy = 2851.6571 kcal/mol (2848.6574 without restraints) Performing minimization step: 3712. Total energy = 2851.4386 kcal/mol (2848.4396 without restraints) Performing minimization step: 3713. Total energy = 2851.2193 kcal/mol (2848.2210 without restraints) Performing minimization step: 3714. Total energy = 2851.0011 kcal/mol (2848.0037 without restraints) Performing minimization step: 3715. Total energy = 2850.7827 kcal/mol (2847.7861 without restraints) Performing minimization step: 3716. Total energy = 2850.5653 kcal/mol (2847.5695 without restraints) Performing minimization step: 3717. Total energy = 2850.3476 kcal/mol (2847.3527 without restraints) Performing minimization step: 3718. Total energy = 2850.1299 kcal/mol (2847.1358 without restraints) Performing minimization step: 3719. Total energy = 2849.9124 kcal/mol (2846.9191 without restraints) Performing minimization step: 3720. Total energy = 2849.6947 kcal/mol (2846.7021 without restraints) Performing minimization step: 3721. Total energy = 2849.4771 kcal/mol (2846.4854 without restraints) Performing minimization step: 3722. Total energy = 2849.2605 kcal/mol (2846.2697 without restraints) Performing minimization step: 3723. Total energy = 2849.0435 kcal/mol (2846.0534 without restraints) Performing minimization step: 3724. Total energy = 2848.8268 kcal/mol (2845.8373 without restraints) Performing minimization step: 3725. Total energy = 2848.6099 kcal/mol (2845.6213 without restraints) Performing minimization step: 3726. Total energy = 2848.3933 kcal/mol (2845.4055 without restraints) Performing minimization step: 3727. Total energy = 2848.1773 kcal/mol (2845.1903 without restraints) Performing minimization step: 3728. Total energy = 2847.9613 kcal/mol (2844.9752 without restraints) Performing minimization step: 3729. Total energy = 2847.7456 kcal/mol (2844.7602 without restraints) Performing minimization step: 3730. Total energy = 2847.5302 kcal/mol (2844.5456 without restraints) Performing minimization step: 3731. Total energy = 2847.3142 kcal/mol (2844.3304 without restraints) Performing minimization step: 3732. Total energy = 2847.0985 kcal/mol (2844.1155 without restraints) Performing minimization step: 3733. Total energy = 2846.8827 kcal/mol (2843.9005 without restraints) Performing minimization step: 3734. Total energy = 2846.6673 kcal/mol (2843.6859 without restraints) Performing minimization step: 3735. Total energy = 2846.4517 kcal/mol (2843.4711 without restraints) Performing minimization step: 3736. Total energy = 2846.2363 kcal/mol (2843.2565 without restraints) Performing minimization step: 3737. Total energy = 2846.0212 kcal/mol (2843.0422 without restraints) Performing minimization step: 3738. Total energy = 2845.8063 kcal/mol (2842.8281 without restraints) Performing minimization step: 3739. Total energy = 2845.5921 kcal/mol (2842.6149 without restraints) Performing minimization step: 3740. Total energy = 2845.3776 kcal/mol (2842.4009 without restraints) Performing minimization step: 3741. Total energy = 2845.1631 kcal/mol (2842.1872 without restraints) Performing minimization step: 3742. Total energy = 2844.9487 kcal/mol (2841.9737 without restraints) Performing minimization step: 3743. Total energy = 2844.7347 kcal/mol (2841.7607 without restraints) Performing minimization step: 3744. Total energy = 2844.5212 kcal/mol (2841.5477 without restraints) Performing minimization step: 3745. Total energy = 2844.3070 kcal/mol (2841.3344 without restraints) Performing minimization step: 3746. Total energy = 2844.0932 kcal/mol (2841.1214 without restraints) Performing minimization step: 3747. Total energy = 2843.8801 kcal/mol (2840.9090 without restraints) Performing minimization step: 3748. Total energy = 2843.6662 kcal/mol (2840.6961 without restraints) Performing minimization step: 3749. Total energy = 2843.4533 kcal/mol (2840.4839 without restraints) Performing minimization step: 3750. Total energy = 2843.2404 kcal/mol (2840.2717 without restraints) Performing minimization step: 3751. Total energy = 2843.0275 kcal/mol (2840.0596 without restraints) Performing minimization step: 3752. Total energy = 2842.8148 kcal/mol (2839.8477 without restraints) Performing minimization step: 3753. Total energy = 2842.6022 kcal/mol (2839.6360 without restraints) Performing minimization step: 3754. Total energy = 2842.3898 kcal/mol (2839.4243 without restraints) Performing minimization step: 3755. Total energy = 2842.1775 kcal/mol (2839.2128 without restraints) Performing minimization step: 3756. Total energy = 2841.9653 kcal/mol (2839.0015 without restraints) Performing minimization step: 3757. Total energy = 2841.7532 kcal/mol (2838.7901 without restraints) Performing minimization step: 3758. Total energy = 2841.5415 kcal/mol (2838.5792 without restraints) Performing minimization step: 3759. Total energy = 2841.3296 kcal/mol (2838.3681 without restraints) Performing minimization step: 3760. Total energy = 2841.1179 kcal/mol (2838.1571 without restraints) Performing minimization step: 3761. Total energy = 2840.9062 kcal/mol (2837.9464 without restraints) Performing minimization step: 3762. Total energy = 2840.6948 kcal/mol (2837.7356 without restraints) Performing minimization step: 3763. Total energy = 2840.4832 kcal/mol (2837.5248 without restraints) Performing minimization step: 3764. Total energy = 2840.2723 kcal/mol (2837.3148 without restraints) Performing minimization step: 3765. Total energy = 2840.0612 kcal/mol (2837.1044 without restraints) Performing minimization step: 3766. Total energy = 2839.8502 kcal/mol (2836.8943 without restraints) Performing minimization step: 3767. Total energy = 2839.6394 kcal/mol (2836.6843 without restraints) Performing minimization step: 3768. Total energy = 2839.4283 kcal/mol (2836.4740 without restraints) Performing minimization step: 3769. Total energy = 2839.2176 kcal/mol (2836.2640 without restraints) Performing minimization step: 3770. Total energy = 2839.0072 kcal/mol (2836.0544 without restraints) Performing minimization step: 3771. Total energy = 2838.7969 kcal/mol (2835.8449 without restraints) Performing minimization step: 3772. Total energy = 2838.5867 kcal/mol (2835.6354 without restraints) Performing minimization step: 3773. Total energy = 2838.3766 kcal/mol (2835.4262 without restraints) Performing minimization step: 3774. Total energy = 2838.1670 kcal/mol (2835.2173 without restraints) Performing minimization step: 3775. Total energy = 2837.9570 kcal/mol (2835.0082 without restraints) Performing minimization step: 3776. Total energy = 2837.7475 kcal/mol (2834.7995 without restraints) Performing minimization step: 3777. Total energy = 2837.5379 kcal/mol (2834.5906 without restraints) Performing minimization step: 3778. Total energy = 2837.3288 kcal/mol (2834.3823 without restraints) Performing minimization step: 3779. Total energy = 2837.1199 kcal/mol (2834.1743 without restraints) Performing minimization step: 3780. Total energy = 2836.9109 kcal/mol (2833.9660 without restraints) Performing minimization step: 3781. Total energy = 2836.7024 kcal/mol (2833.7583 without restraints) Performing minimization step: 3782. Total energy = 2836.4937 kcal/mol (2833.5506 without restraints) Performing minimization step: 3783. Total energy = 2836.2851 kcal/mol (2833.3425 without restraints) Performing minimization step: 3784. Total energy = 2836.0763 kcal/mol (2833.1346 without restraints) Performing minimization step: 3785. Total energy = 2835.8674 kcal/mol (2832.9265 without restraints) Performing minimization step: 3786. Total energy = 2835.6592 kcal/mol (2832.7191 without restraints) Performing minimization step: 3787. Total energy = 2835.4511 kcal/mol (2832.5118 without restraints) Performing minimization step: 3788. Total energy = 2835.2434 kcal/mol (2832.3049 without restraints) Performing minimization step: 3789. Total energy = 2835.0357 kcal/mol (2832.0980 without restraints) Performing minimization step: 3790. Total energy = 2834.8280 kcal/mol (2831.8909 without restraints) Performing minimization step: 3791. Total energy = 2834.6204 kcal/mol (2831.6843 without restraints) Performing minimization step: 3792. Total energy = 2834.4131 kcal/mol (2831.4777 without restraints) Performing minimization step: 3793. Total energy = 2834.2058 kcal/mol (2831.2711 without restraints) Performing minimization step: 3794. Total energy = 2833.9986 kcal/mol (2831.0645 without restraints) Performing minimization step: 3795. Total energy = 2833.7914 kcal/mol (2830.8583 without restraints) Performing minimization step: 3796. Total energy = 2833.5845 kcal/mol (2830.6523 without restraints) Performing minimization step: 3797. Total energy = 2833.3782 kcal/mol (2830.4468 without restraints) Performing minimization step: 3798. Total energy = 2833.1717 kcal/mol (2830.2408 without restraints) Performing minimization step: 3799. Total energy = 2832.9650 kcal/mol (2830.0351 without restraints) Performing minimization step: 3800. Total energy = 2832.7586 kcal/mol (2829.8295 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 2832.5526 kcal/mol (2829.6244 without restraints) Performing minimization step: 3802. Total energy = 2832.3468 kcal/mol (2829.4194 without restraints) Performing minimization step: 3803. Total energy = 2832.1410 kcal/mol (2829.2143 without restraints) Performing minimization step: 3804. Total energy = 2831.9352 kcal/mol (2829.0092 without restraints) Performing minimization step: 3805. Total energy = 2831.7293 kcal/mol (2828.8041 without restraints) Performing minimization step: 3806. Total energy = 2831.5238 kcal/mol (2828.5993 without restraints) Performing minimization step: 3807. Total energy = 2831.3184 kcal/mol (2828.3948 without restraints) Performing minimization step: 3808. Total energy = 2831.1133 kcal/mol (2828.1905 without restraints) Performing minimization step: 3809. Total energy = 2830.9083 kcal/mol (2827.9862 without restraints) Performing minimization step: 3810. Total energy = 2830.7044 kcal/mol (2827.7831 without restraints) Performing minimization step: 3811. Total energy = 2830.4996 kcal/mol (2827.5790 without restraints) Performing minimization step: 3812. Total energy = 2830.2945 kcal/mol (2827.3748 without restraints) Performing minimization step: 3813. Total energy = 2830.0898 kcal/mol (2827.1710 without restraints) Performing minimization step: 3814. Total energy = 2829.8858 kcal/mol (2826.9678 without restraints) Performing minimization step: 3815. Total energy = 2829.6816 kcal/mol (2826.7642 without restraints) Performing minimization step: 3816. Total energy = 2829.4773 kcal/mol (2826.5607 without restraints) Performing minimization step: 3817. Total energy = 2829.2731 kcal/mol (2826.3574 without restraints) Performing minimization step: 3818. Total energy = 2829.0695 kcal/mol (2826.1544 without restraints) Performing minimization step: 3819. Total energy = 2828.8656 kcal/mol (2825.9514 without restraints) Performing minimization step: 3820. Total energy = 2828.6618 kcal/mol (2825.7483 without restraints) Performing minimization step: 3821. Total energy = 2828.4582 kcal/mol (2825.5456 without restraints) Performing minimization step: 3822. Total energy = 2828.2545 kcal/mol (2825.3425 without restraints) Performing minimization step: 3823. Total energy = 2828.0511 kcal/mol (2825.1401 without restraints) Performing minimization step: 3824. Total energy = 2827.8482 kcal/mol (2824.9379 without restraints) Performing minimization step: 3825. Total energy = 2827.6451 kcal/mol (2824.7354 without restraints) Performing minimization step: 3826. Total energy = 2827.4422 kcal/mol (2824.5335 without restraints) Performing minimization step: 3827. Total energy = 2827.2397 kcal/mol (2824.3317 without restraints) Performing minimization step: 3828. Total energy = 2827.0371 kcal/mol (2824.1299 without restraints) Performing minimization step: 3829. Total energy = 2826.8346 kcal/mol (2823.9282 without restraints) Performing minimization step: 3830. Total energy = 2826.6324 kcal/mol (2823.7268 without restraints) Performing minimization step: 3831. Total energy = 2826.4299 kcal/mol (2823.5251 without restraints) Performing minimization step: 3832. Total energy = 2826.2278 kcal/mol (2823.3238 without restraints) Performing minimization step: 3833. Total energy = 2826.0259 kcal/mol (2823.1226 without restraints) Performing minimization step: 3834. Total energy = 2825.8237 kcal/mol (2822.9213 without restraints) Performing minimization step: 3835. Total energy = 2825.6216 kcal/mol (2822.7200 without restraints) Performing minimization step: 3836. Total energy = 2825.4201 kcal/mol (2822.5192 without restraints) Performing minimization step: 3837. Total energy = 2825.2185 kcal/mol (2822.3184 without restraints) Performing minimization step: 3838. Total energy = 2825.0173 kcal/mol (2822.1179 without restraints) Performing minimization step: 3839. Total energy = 2824.8163 kcal/mol (2821.9177 without restraints) Performing minimization step: 3840. Total energy = 2824.6152 kcal/mol (2821.7174 without restraints) Performing minimization step: 3841. Total energy = 2824.4146 kcal/mol (2821.5177 without restraints) Performing minimization step: 3842. Total energy = 2824.2139 kcal/mol (2821.3177 without restraints) Performing minimization step: 3843. Total energy = 2824.0128 kcal/mol (2821.1174 without restraints) Performing minimization step: 3844. Total energy = 2823.8124 kcal/mol (2820.9178 without restraints) Performing minimization step: 3845. Total energy = 2823.6121 kcal/mol (2820.7182 without restraints) Performing minimization step: 3846. Total energy = 2823.4118 kcal/mol (2820.5187 without restraints) Performing minimization step: 3847. Total energy = 2823.2115 kcal/mol (2820.3191 without restraints) Performing minimization step: 3848. Total energy = 2823.0115 kcal/mol (2820.1199 without restraints) Performing minimization step: 3849. Total energy = 2822.8114 kcal/mol (2819.9207 without restraints) Performing minimization step: 3850. Total energy = 2822.6120 kcal/mol (2819.7221 without restraints) Performing minimization step: 3851. Total energy = 2822.4128 kcal/mol (2819.5236 without restraints) Performing minimization step: 3852. Total energy = 2822.2129 kcal/mol (2819.3245 without restraints) Performing minimization step: 3853. Total energy = 2822.0136 kcal/mol (2819.1260 without restraints) Performing minimization step: 3854. Total energy = 2821.8142 kcal/mol (2818.9273 without restraints) Performing minimization step: 3855. Total energy = 2821.6149 kcal/mol (2818.7287 without restraints) Performing minimization step: 3856. Total energy = 2821.4162 kcal/mol (2818.5309 without restraints) Performing minimization step: 3857. Total energy = 2821.2168 kcal/mol (2818.3323 without restraints) Performing minimization step: 3858. Total energy = 2821.0182 kcal/mol (2818.1344 without restraints) Performing minimization step: 3859. Total energy = 2820.8196 kcal/mol (2817.9366 without restraints) Performing minimization step: 3860. Total energy = 2820.6214 kcal/mol (2817.7391 without restraints) Performing minimization step: 3861. Total energy = 2820.4231 kcal/mol (2817.5416 without restraints) Performing minimization step: 3862. Total energy = 2820.2249 kcal/mol (2817.3444 without restraints) Performing minimization step: 3863. Total energy = 2820.0270 kcal/mol (2817.1472 without restraints) Performing minimization step: 3864. Total energy = 2819.8295 kcal/mol (2816.9504 without restraints) Performing minimization step: 3865. Total energy = 2819.6324 kcal/mol (2816.7541 without restraints) Performing minimization step: 3866. Total energy = 2819.4351 kcal/mol (2816.5575 without restraints) Performing minimization step: 3867. Total energy = 2819.2375 kcal/mol (2816.3607 without restraints) Performing minimization step: 3868. Total energy = 2819.0398 kcal/mol (2816.1637 without restraints) Performing minimization step: 3869. Total energy = 2818.8429 kcal/mol (2815.9677 without restraints) Performing minimization step: 3870. Total energy = 2818.6455 kcal/mol (2815.7708 without restraints) Performing minimization step: 3871. Total energy = 2818.4483 kcal/mol (2815.5747 without restraints) Performing minimization step: 3872. Total energy = 2818.2514 kcal/mol (2815.3784 without restraints) Performing minimization step: 3873. Total energy = 2818.0541 kcal/mol (2815.1819 without restraints) Performing minimization step: 3874. Total energy = 2817.8579 kcal/mol (2814.9866 without restraints) Performing minimization step: 3875. Total energy = 2817.6611 kcal/mol (2814.7905 without restraints) Performing minimization step: 3876. Total energy = 2817.4645 kcal/mol (2814.5946 without restraints) Performing minimization step: 3877. Total energy = 2817.2678 kcal/mol (2814.3986 without restraints) Performing minimization step: 3878. Total energy = 2817.0716 kcal/mol (2814.2033 without restraints) Performing minimization step: 3879. Total energy = 2816.8759 kcal/mol (2814.0086 without restraints) Performing minimization step: 3880. Total energy = 2816.6803 kcal/mol (2813.8135 without restraints) Performing minimization step: 3881. Total energy = 2816.4843 kcal/mol (2813.6182 without restraints) Performing minimization step: 3882. Total energy = 2816.2884 kcal/mol (2813.4232 without restraints) Performing minimization step: 3883. Total energy = 2816.0935 kcal/mol (2813.2292 without restraints) Performing minimization step: 3884. Total energy = 2815.8987 kcal/mol (2813.0350 without restraints) Performing minimization step: 3885. Total energy = 2815.7032 kcal/mol (2812.8402 without restraints) Performing minimization step: 3886. Total energy = 2815.5082 kcal/mol (2812.6462 without restraints) Performing minimization step: 3887. Total energy = 2815.3131 kcal/mol (2812.4516 without restraints) Performing minimization step: 3888. Total energy = 2815.1181 kcal/mol (2812.2575 without restraints) Performing minimization step: 3889. Total energy = 2814.9230 kcal/mol (2812.0632 without restraints) Performing minimization step: 3890. Total energy = 2814.7282 kcal/mol (2811.8692 without restraints) Performing minimization step: 3891. Total energy = 2814.5333 kcal/mol (2811.6751 without restraints) Performing minimization step: 3892. Total energy = 2814.3390 kcal/mol (2811.4816 without restraints) Performing minimization step: 3893. Total energy = 2814.1443 kcal/mol (2811.2876 without restraints) Performing minimization step: 3894. Total energy = 2813.9506 kcal/mol (2811.0946 without restraints) Performing minimization step: 3895. Total energy = 2813.7561 kcal/mol (2810.9010 without restraints) Performing minimization step: 3896. Total energy = 2813.5620 kcal/mol (2810.7077 without restraints) Performing minimization step: 3897. Total energy = 2813.3681 kcal/mol (2810.5145 without restraints) Performing minimization step: 3898. Total energy = 2813.1743 kcal/mol (2810.3214 without restraints) Performing minimization step: 3899. Total energy = 2812.9805 kcal/mol (2810.1285 without restraints) Performing minimization step: 3900. Total energy = 2812.7868 kcal/mol (2809.9355 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 2812.5932 kcal/mol (2809.7427 without restraints) Performing minimization step: 3902. Total energy = 2812.3998 kcal/mol (2809.5501 without restraints) Performing minimization step: 3903. Total energy = 2812.2067 kcal/mol (2809.3577 without restraints) Performing minimization step: 3904. Total energy = 2812.0134 kcal/mol (2809.1652 without restraints) Performing minimization step: 3905. Total energy = 2811.8202 kcal/mol (2808.9728 without restraints) Performing minimization step: 3906. Total energy = 2811.6275 kcal/mol (2808.7808 without restraints) Performing minimization step: 3907. Total energy = 2811.4351 kcal/mol (2808.5892 without restraints) Performing minimization step: 3908. Total energy = 2811.2424 kcal/mol (2808.3973 without restraints) Performing minimization step: 3909. Total energy = 2811.0499 kcal/mol (2808.2055 without restraints) Performing minimization step: 3910. Total energy = 2810.8574 kcal/mol (2808.0136 without restraints) Performing minimization step: 3911. Total energy = 2810.6649 kcal/mol (2807.8220 without restraints) Performing minimization step: 3912. Total energy = 2810.4727 kcal/mol (2807.6306 without restraints) Performing minimization step: 3913. Total energy = 2810.2806 kcal/mol (2807.4393 without restraints) Performing minimization step: 3914. Total energy = 2810.0887 kcal/mol (2807.2481 without restraints) Performing minimization step: 3915. Total energy = 2809.8969 kcal/mol (2807.0571 without restraints) Performing minimization step: 3916. Total energy = 2809.7051 kcal/mol (2806.8661 without restraints) Performing minimization step: 3917. Total energy = 2809.5135 kcal/mol (2806.6752 without restraints) Performing minimization step: 3918. Total energy = 2809.3222 kcal/mol (2806.4847 without restraints) Performing minimization step: 3919. Total energy = 2809.1307 kcal/mol (2806.2940 without restraints) Performing minimization step: 3920. Total energy = 2808.9394 kcal/mol (2806.1035 without restraints) Performing minimization step: 3921. Total energy = 2808.7484 kcal/mol (2805.9133 without restraints) Performing minimization step: 3922. Total energy = 2808.5573 kcal/mol (2805.7229 without restraints) Performing minimization step: 3923. Total energy = 2808.3666 kcal/mol (2805.5330 without restraints) Performing minimization step: 3924. Total energy = 2808.1760 kcal/mol (2805.3432 without restraints) Performing minimization step: 3925. Total energy = 2807.9855 kcal/mol (2805.1534 without restraints) Performing minimization step: 3926. Total energy = 2807.7953 kcal/mol (2804.9641 without restraints) Performing minimization step: 3927. Total energy = 2807.6049 kcal/mol (2804.7743 without restraints) Performing minimization step: 3928. Total energy = 2807.4146 kcal/mol (2804.5848 without restraints) Performing minimization step: 3929. Total energy = 2807.2244 kcal/mol (2804.3953 without restraints) Performing minimization step: 3930. Total energy = 2807.0347 kcal/mol (2804.2064 without restraints) Performing minimization step: 3931. Total energy = 2806.8446 kcal/mol (2804.0171 without restraints) Performing minimization step: 3932. Total energy = 2806.6546 kcal/mol (2803.8280 without restraints) Performing minimization step: 3933. Total energy = 2806.4656 kcal/mol (2803.6396 without restraints) Performing minimization step: 3934. Total energy = 2806.2759 kcal/mol (2803.4507 without restraints) Performing minimization step: 3935. Total energy = 2806.0864 kcal/mol (2803.2619 without restraints) Performing minimization step: 3936. Total energy = 2805.8970 kcal/mol (2803.0733 without restraints) Performing minimization step: 3937. Total energy = 2805.7075 kcal/mol (2802.8845 without restraints) Performing minimization step: 3938. Total energy = 2805.5182 kcal/mol (2802.6961 without restraints) Performing minimization step: 3939. Total energy = 2805.3294 kcal/mol (2802.5079 without restraints) Performing minimization step: 3940. Total energy = 2805.1399 kcal/mol (2802.3193 without restraints) Performing minimization step: 3941. Total energy = 2804.9510 kcal/mol (2802.1311 without restraints) Performing minimization step: 3942. Total energy = 2804.7622 kcal/mol (2801.9431 without restraints) Performing minimization step: 3943. Total energy = 2804.5739 kcal/mol (2801.7556 without restraints) Performing minimization step: 3944. Total energy = 2804.3857 kcal/mol (2801.5681 without restraints) Performing minimization step: 3945. Total energy = 2804.1975 kcal/mol (2801.3807 without restraints) Performing minimization step: 3946. Total energy = 2804.0092 kcal/mol (2801.1932 without restraints) Performing minimization step: 3947. Total energy = 2803.8209 kcal/mol (2801.0056 without restraints) Performing minimization step: 3948. Total energy = 2803.6330 kcal/mol (2800.8186 without restraints) Performing minimization step: 3949. Total energy = 2803.4453 kcal/mol (2800.6316 without restraints) Performing minimization step: 3950. Total energy = 2803.2575 kcal/mol (2800.4445 without restraints) Performing minimization step: 3951. Total energy = 2803.0696 kcal/mol (2800.2574 without restraints) Performing minimization step: 3952. Total energy = 2802.8822 kcal/mol (2800.0707 without restraints) Performing minimization step: 3953. Total energy = 2802.6945 kcal/mol (2799.8838 without restraints) Performing minimization step: 3954. Total energy = 2802.5069 kcal/mol (2799.6969 without restraints) Performing minimization step: 3955. Total energy = 2802.3195 kcal/mol (2799.5103 without restraints) Performing minimization step: 3956. Total energy = 2802.1327 kcal/mol (2799.3244 without restraints) Performing minimization step: 3957. Total energy = 2801.9456 kcal/mol (2799.1380 without restraints) Performing minimization step: 3958. Total energy = 2801.7581 kcal/mol (2798.9513 without restraints) Performing minimization step: 3959. Total energy = 2801.5709 kcal/mol (2798.7646 without restraints) Performing minimization step: 3960. Total energy = 2801.3842 kcal/mol (2798.5789 without restraints) Performing minimization step: 3961. Total energy = 2801.1975 kcal/mol (2798.3930 without restraints) Performing minimization step: 3962. Total energy = 2801.0112 kcal/mol (2798.2074 without restraints) Performing minimization step: 3963. Total energy = 2800.8246 kcal/mol (2798.0215 without restraints) Performing minimization step: 3964. Total energy = 2800.6386 kcal/mol (2797.8363 without restraints) Performing minimization step: 3965. Total energy = 2800.4531 kcal/mol (2797.6515 without restraints) Performing minimization step: 3966. Total energy = 2800.2673 kcal/mol (2797.4665 without restraints) Performing minimization step: 3967. Total energy = 2800.0812 kcal/mol (2797.2810 without restraints) Performing minimization step: 3968. Total energy = 2799.8951 kcal/mol (2797.0958 without restraints) Performing minimization step: 3969. Total energy = 2799.7093 kcal/mol (2796.9107 without restraints) Performing minimization step: 3970. Total energy = 2799.5238 kcal/mol (2796.7261 without restraints) Performing minimization step: 3971. Total energy = 2799.3385 kcal/mol (2796.5414 without restraints) Performing minimization step: 3972. Total energy = 2799.1525 kcal/mol (2796.3563 without restraints) Performing minimization step: 3973. Total energy = 2798.9671 kcal/mol (2796.1716 without restraints) Performing minimization step: 3974. Total energy = 2798.7819 kcal/mol (2795.9872 without restraints) Performing minimization step: 3975. Total energy = 2798.5962 kcal/mol (2795.8020 without restraints) Performing minimization step: 3976. Total energy = 2798.4109 kcal/mol (2795.6177 without restraints) Performing minimization step: 3977. Total energy = 2798.2263 kcal/mol (2795.4339 without restraints) Performing minimization step: 3978. Total energy = 2798.0414 kcal/mol (2795.2497 without restraints) Performing minimization step: 3979. Total energy = 2797.8569 kcal/mol (2795.0661 without restraints) Performing minimization step: 3980. Total energy = 2797.6724 kcal/mol (2794.8822 without restraints) Performing minimization step: 3981. Total energy = 2797.4882 kcal/mol (2794.6987 without restraints) Performing minimization step: 3982. Total energy = 2797.3041 kcal/mol (2794.5155 without restraints) Performing minimization step: 3983. Total energy = 2797.1202 kcal/mol (2794.3323 without restraints) Performing minimization step: 3984. Total energy = 2796.9363 kcal/mol (2794.1491 without restraints) Performing minimization step: 3985. Total energy = 2796.7522 kcal/mol (2793.9657 without restraints) Performing minimization step: 3986. Total energy = 2796.5681 kcal/mol (2793.7825 without restraints) Performing minimization step: 3987. Total energy = 2796.3844 kcal/mol (2793.5996 without restraints) Performing minimization step: 3988. Total energy = 2796.2006 kcal/mol (2793.4165 without restraints) Performing minimization step: 3989. Total energy = 2796.0170 kcal/mol (2793.2336 without restraints) Performing minimization step: 3990. Total energy = 2795.8337 kcal/mol (2793.0511 without restraints) Performing minimization step: 3991. Total energy = 2795.6501 kcal/mol (2792.8681 without restraints) Performing minimization step: 3992. Total energy = 2795.4664 kcal/mol (2792.6853 without restraints) Performing minimization step: 3993. Total energy = 2795.2829 kcal/mol (2792.5025 without restraints) Performing minimization step: 3994. Total energy = 2795.0996 kcal/mol (2792.3200 without restraints) Performing minimization step: 3995. Total energy = 2794.9164 kcal/mol (2792.1375 without restraints) Performing minimization step: 3996. Total energy = 2794.7334 kcal/mol (2791.9554 without restraints) Performing minimization step: 3997. Total energy = 2794.5505 kcal/mol (2791.7731 without restraints) Performing minimization step: 3998. Total energy = 2794.3672 kcal/mol (2791.5906 without restraints) Performing minimization step: 3999. Total energy = 2794.1844 kcal/mol (2791.4085 without restraints) Performing minimization step: 4000. Total energy = 2794.0017 kcal/mol (2791.2266 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 2793.8192 kcal/mol (2791.0447 without restraints) Performing minimization step: 4002. Total energy = 2793.6364 kcal/mol (2790.8628 without restraints) Performing minimization step: 4003. Total energy = 2793.4540 kcal/mol (2790.6813 without restraints) Performing minimization step: 4004. Total energy = 2793.2717 kcal/mol (2790.4996 without restraints) Performing minimization step: 4005. Total energy = 2793.0895 kcal/mol (2790.3181 without restraints) Performing minimization step: 4006. Total energy = 2792.9075 kcal/mol (2790.1369 without restraints) Performing minimization step: 4007. Total energy = 2792.7254 kcal/mol (2789.9555 without restraints) Performing minimization step: 4008. Total energy = 2792.5434 kcal/mol (2789.7743 without restraints) Performing minimization step: 4009. Total energy = 2792.3616 kcal/mol (2789.5934 without restraints) Performing minimization step: 4010. Total energy = 2792.1796 kcal/mol (2789.4120 without restraints) Performing minimization step: 4011. Total energy = 2791.9977 kcal/mol (2789.2309 without restraints) Performing minimization step: 4012. Total energy = 2791.8160 kcal/mol (2789.0499 without restraints) Performing minimization step: 4013. Total energy = 2791.6344 kcal/mol (2788.8691 without restraints) Performing minimization step: 4014. Total energy = 2791.4530 kcal/mol (2788.6884 without restraints) Performing minimization step: 4015. Total energy = 2791.2720 kcal/mol (2788.5082 without restraints) Performing minimization step: 4016. Total energy = 2791.0913 kcal/mol (2788.3282 without restraints) Performing minimization step: 4017. Total energy = 2790.9104 kcal/mol (2788.1481 without restraints) Performing minimization step: 4018. Total energy = 2790.7292 kcal/mol (2787.9676 without restraints) Performing minimization step: 4019. Total energy = 2790.5483 kcal/mol (2787.7874 without restraints) Performing minimization step: 4020. Total energy = 2790.3673 kcal/mol (2787.6070 without restraints) Performing minimization step: 4021. Total energy = 2790.1865 kcal/mol (2787.4271 without restraints) Performing minimization step: 4022. Total energy = 2790.0061 kcal/mol (2787.2475 without restraints) Performing minimization step: 4023. Total energy = 2789.8258 kcal/mol (2787.0681 without restraints) Performing minimization step: 4024. Total energy = 2789.6456 kcal/mol (2786.8885 without restraints) Performing minimization step: 4025. Total energy = 2789.4655 kcal/mol (2786.7093 without restraints) Performing minimization step: 4026. Total energy = 2789.2855 kcal/mol (2786.5299 without restraints) Performing minimization step: 4027. Total energy = 2789.1058 kcal/mol (2786.3509 without restraints) Performing minimization step: 4028. Total energy = 2788.9259 kcal/mol (2786.1718 without restraints) Performing minimization step: 4029. Total energy = 2788.7459 kcal/mol (2785.9926 without restraints) Performing minimization step: 4030. Total energy = 2788.5665 kcal/mol (2785.8139 without restraints) Performing minimization step: 4031. Total energy = 2788.3866 kcal/mol (2785.6346 without restraints) Performing minimization step: 4032. Total energy = 2788.2073 kcal/mol (2785.4561 without restraints) Performing minimization step: 4033. Total energy = 2788.0276 kcal/mol (2785.2770 without restraints) Performing minimization step: 4034. Total energy = 2787.8479 kcal/mol (2785.0982 without restraints) Performing minimization step: 4035. Total energy = 2787.6684 kcal/mol (2784.9196 without restraints) Performing minimization step: 4036. Total energy = 2787.4889 kcal/mol (2784.7407 without restraints) Performing minimization step: 4037. Total energy = 2787.3098 kcal/mol (2784.5623 without restraints) Performing minimization step: 4038. Total energy = 2787.1311 kcal/mol (2784.3844 without restraints) Performing minimization step: 4039. Total energy = 2786.9525 kcal/mol (2784.2065 without restraints) Performing minimization step: 4040. Total energy = 2786.7732 kcal/mol (2784.0280 without restraints) Performing minimization step: 4041. Total energy = 2786.5946 kcal/mol (2783.8503 without restraints) Performing minimization step: 4042. Total energy = 2786.4159 kcal/mol (2783.6722 without restraints) Performing minimization step: 4043. Total energy = 2786.2378 kcal/mol (2783.4948 without restraints) Performing minimization step: 4044. Total energy = 2786.0592 kcal/mol (2783.3170 without restraints) Performing minimization step: 4045. Total energy = 2785.8807 kcal/mol (2783.1392 without restraints) Performing minimization step: 4046. Total energy = 2785.7022 kcal/mol (2782.9616 without restraints) Performing minimization step: 4047. Total energy = 2785.5236 kcal/mol (2782.7837 without restraints) Performing minimization step: 4048. Total energy = 2785.3453 kcal/mol (2782.6061 without restraints) Performing minimization step: 4049. Total energy = 2785.1670 kcal/mol (2782.4285 without restraints) Performing minimization step: 4050. Total energy = 2784.9888 kcal/mol (2782.2511 without restraints) Performing minimization step: 4051. Total energy = 2784.8107 kcal/mol (2782.0737 without restraints) Performing minimization step: 4052. Total energy = 2784.6327 kcal/mol (2781.8965 without restraints) Performing minimization step: 4053. Total energy = 2784.4550 kcal/mol (2781.7197 without restraints) Performing minimization step: 4054. Total energy = 2784.2772 kcal/mol (2781.5426 without restraints) Performing minimization step: 4055. Total energy = 2784.0996 kcal/mol (2781.3658 without restraints) Performing minimization step: 4056. Total energy = 2783.9230 kcal/mol (2781.1897 without restraints) Performing minimization step: 4057. Total energy = 2783.7457 kcal/mol (2781.0132 without restraints) Performing minimization step: 4058. Total energy = 2783.5685 kcal/mol (2780.8367 without restraints) Performing minimization step: 4059. Total energy = 2783.3914 kcal/mol (2780.6603 without restraints) Performing minimization step: 4060. Total energy = 2783.2142 kcal/mol (2780.4843 without restraints) Performing minimization step: 4061. Total energy = 2783.0374 kcal/mol (2780.3078 without restraints) Performing minimization step: 4062. Total energy = 2782.8601 kcal/mol (2780.1310 without restraints) Performing minimization step: 4063. Total energy = 2782.6830 kcal/mol (2779.9549 without restraints) Performing minimization step: 4064. Total energy = 2782.5059 kcal/mol (2779.7784 without restraints) Performing minimization step: 4065. Total energy = 2782.3290 kcal/mol (2779.6024 without restraints) Performing minimization step: 4066. Total energy = 2782.1524 kcal/mol (2779.4265 without restraints) Performing minimization step: 4067. Total energy = 2781.9755 kcal/mol (2779.2504 without restraints) Performing minimization step: 4068. Total energy = 2781.7987 kcal/mol (2779.0743 without restraints) Performing minimization step: 4069. Total energy = 2781.6226 kcal/mol (2778.8989 without restraints) Performing minimization step: 4070. Total energy = 2781.4461 kcal/mol (2778.7232 without restraints) Performing minimization step: 4071. Total energy = 2781.2697 kcal/mol (2778.5475 without restraints) Performing minimization step: 4072. Total energy = 2781.0934 kcal/mol (2778.3721 without restraints) Performing minimization step: 4073. Total energy = 2780.9173 kcal/mol (2778.1966 without restraints) Performing minimization step: 4074. Total energy = 2780.7410 kcal/mol (2778.0209 without restraints) Performing minimization step: 4075. Total energy = 2780.5648 kcal/mol (2777.8456 without restraints) Performing minimization step: 4076. Total energy = 2780.3884 kcal/mol (2777.6699 without restraints) Performing minimization step: 4077. Total energy = 2780.2124 kcal/mol (2777.4947 without restraints) Performing minimization step: 4078. Total energy = 2780.0370 kcal/mol (2777.3200 without restraints) Performing minimization step: 4079. Total energy = 2779.8614 kcal/mol (2777.1453 without restraints) Performing minimization step: 4080. Total energy = 2779.6859 kcal/mol (2776.9704 without restraints) Performing minimization step: 4081. Total energy = 2779.5103 kcal/mol (2776.7954 without restraints) Performing minimization step: 4082. Total energy = 2779.3343 kcal/mol (2776.6202 without restraints) Performing minimization step: 4083. Total energy = 2779.1587 kcal/mol (2776.4454 without restraints) Performing minimization step: 4084. Total energy = 2778.9831 kcal/mol (2776.2705 without restraints) Performing minimization step: 4085. Total energy = 2778.8077 kcal/mol (2776.0959 without restraints) Performing minimization step: 4086. Total energy = 2778.6325 kcal/mol (2775.9214 without restraints) Performing minimization step: 4087. Total energy = 2778.4573 kcal/mol (2775.7469 without restraints) Performing minimization step: 4088. Total energy = 2778.2825 kcal/mol (2775.5728 without restraints) Performing minimization step: 4089. Total energy = 2778.1074 kcal/mol (2775.3985 without restraints) Performing minimization step: 4090. Total energy = 2777.9326 kcal/mol (2775.2245 without restraints) Performing minimization step: 4091. Total energy = 2777.7578 kcal/mol (2775.0503 without restraints) Performing minimization step: 4092. Total energy = 2777.5829 kcal/mol (2774.8762 without restraints) Performing minimization step: 4093. Total energy = 2777.4080 kcal/mol (2774.7021 without restraints) Performing minimization step: 4094. Total energy = 2777.2336 kcal/mol (2774.5283 without restraints) Performing minimization step: 4095. Total energy = 2777.0593 kcal/mol (2774.3547 without restraints) Performing minimization step: 4096. Total energy = 2776.8845 kcal/mol (2774.1807 without restraints) Performing minimization step: 4097. Total energy = 2776.7100 kcal/mol (2774.0069 without restraints) Performing minimization step: 4098. Total energy = 2776.5355 kcal/mol (2773.8332 without restraints) Performing minimization step: 4099. Total energy = 2776.3617 kcal/mol (2773.6600 without restraints) Performing minimization step: 4100. Total energy = 2776.1880 kcal/mol (2773.4870 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 2776.0137 kcal/mol (2773.3135 without restraints) Performing minimization step: 4102. Total energy = 2775.8395 kcal/mol (2773.1401 without restraints) Performing minimization step: 4103. Total energy = 2775.6654 kcal/mol (2772.9667 without restraints) Performing minimization step: 4104. Total energy = 2775.4914 kcal/mol (2772.7934 without restraints) Performing minimization step: 4105. Total energy = 2775.3183 kcal/mol (2772.6210 without restraints) Performing minimization step: 4106. Total energy = 2775.1447 kcal/mol (2772.4481 without restraints) Performing minimization step: 4107. Total energy = 2774.9707 kcal/mol (2772.2748 without restraints) Performing minimization step: 4108. Total energy = 2774.7968 kcal/mol (2772.1016 without restraints) Performing minimization step: 4109. Total energy = 2774.6233 kcal/mol (2771.9289 without restraints) Performing minimization step: 4110. Total energy = 2774.4496 kcal/mol (2771.7558 without restraints) Performing minimization step: 4111. Total energy = 2774.2756 kcal/mol (2771.5827 without restraints) Performing minimization step: 4112. Total energy = 2774.1023 kcal/mol (2771.4102 without restraints) Performing minimization step: 4113. Total energy = 2773.9291 kcal/mol (2771.2377 without restraints) Performing minimization step: 4114. Total energy = 2773.7560 kcal/mol (2771.0653 without restraints) Performing minimization step: 4115. Total energy = 2773.5827 kcal/mol (2770.8927 without restraints) Performing minimization step: 4116. Total energy = 2773.4097 kcal/mol (2770.7204 without restraints) Performing minimization step: 4117. Total energy = 2773.2367 kcal/mol (2770.5482 without restraints) Performing minimization step: 4118. Total energy = 2773.0634 kcal/mol (2770.3756 without restraints) Performing minimization step: 4119. Total energy = 2772.8904 kcal/mol (2770.2033 without restraints) Performing minimization step: 4120. Total energy = 2772.7174 kcal/mol (2770.0311 without restraints) Performing minimization step: 4121. Total energy = 2772.5443 kcal/mol (2769.8588 without restraints) Performing minimization step: 4122. Total energy = 2772.3713 kcal/mol (2769.6864 without restraints) Performing minimization step: 4123. Total energy = 2772.1980 kcal/mol (2769.5136 without restraints) Performing minimization step: 4124. Total energy = 2772.0252 kcal/mol (2769.3417 without restraints) Performing minimization step: 4125. Total energy = 2771.8523 kcal/mol (2769.1695 without restraints) Performing minimization step: 4126. Total energy = 2771.6794 kcal/mol (2768.9973 without restraints) Performing minimization step: 4127. Total energy = 2771.5068 kcal/mol (2768.8255 without restraints) Performing minimization step: 4128. Total energy = 2771.3344 kcal/mol (2768.6538 without restraints) Performing minimization step: 4129. Total energy = 2771.1619 kcal/mol (2768.4820 without restraints) Performing minimization step: 4130. Total energy = 2770.9894 kcal/mol (2768.3103 without restraints) Performing minimization step: 4131. Total energy = 2770.8172 kcal/mol (2768.1387 without restraints) Performing minimization step: 4132. Total energy = 2770.6448 kcal/mol (2767.9671 without restraints) Performing minimization step: 4133. Total energy = 2770.4724 kcal/mol (2767.7953 without restraints) Performing minimization step: 4134. Total energy = 2770.3002 kcal/mol (2767.6241 without restraints) Performing minimization step: 4135. Total energy = 2770.1281 kcal/mol (2767.4526 without restraints) Performing minimization step: 4136. Total energy = 2769.9559 kcal/mol (2767.2811 without restraints) Performing minimization step: 4137. Total energy = 2769.7840 kcal/mol (2767.1099 without restraints) Performing minimization step: 4138. Total energy = 2769.6125 kcal/mol (2766.9390 without restraints) Performing minimization step: 4139. Total energy = 2769.4408 kcal/mol (2766.7681 without restraints) Performing minimization step: 4140. Total energy = 2769.2687 kcal/mol (2766.5968 without restraints) Performing minimization step: 4141. Total energy = 2769.0972 kcal/mol (2766.4261 without restraints) Performing minimization step: 4142. Total energy = 2768.9256 kcal/mol (2766.2551 without restraints) Performing minimization step: 4143. Total energy = 2768.7539 kcal/mol (2766.0841 without restraints) Performing minimization step: 4144. Total energy = 2768.5822 kcal/mol (2765.9131 without restraints) Performing minimization step: 4145. Total energy = 2768.4103 kcal/mol (2765.7419 without restraints) Performing minimization step: 4146. Total energy = 2768.2391 kcal/mol (2765.5714 without restraints) Performing minimization step: 4147. Total energy = 2768.0675 kcal/mol (2765.4004 without restraints) Performing minimization step: 4148. Total energy = 2767.8960 kcal/mol (2765.2296 without restraints) Performing minimization step: 4149. Total energy = 2767.7255 kcal/mol (2765.0599 without restraints) Performing minimization step: 4150. Total energy = 2767.5543 kcal/mol (2764.8897 without restraints) Performing minimization step: 4151. Total energy = 2767.3830 kcal/mol (2764.7188 without restraints) Performing minimization step: 4152. Total energy = 2767.2117 kcal/mol (2764.5484 without restraints) Performing minimization step: 4153. Total energy = 2767.0404 kcal/mol (2764.3777 without restraints) Performing minimization step: 4154. Total energy = 2766.8693 kcal/mol (2764.2074 without restraints) Performing minimization step: 4155. Total energy = 2766.6980 kcal/mol (2764.0365 without restraints) Performing minimization step: 4156. Total energy = 2766.5266 kcal/mol (2763.8660 without restraints) Performing minimization step: 4157. Total energy = 2766.3554 kcal/mol (2763.6956 without restraints) Performing minimization step: 4158. Total energy = 2766.1845 kcal/mol (2763.5253 without restraints) Performing minimization step: 4159. Total energy = 2766.0136 kcal/mol (2763.3553 without restraints) Performing minimization step: 4160. Total energy = 2765.8425 kcal/mol (2763.1849 without restraints) Performing minimization step: 4161. Total energy = 2765.6720 kcal/mol (2763.0150 without restraints) Performing minimization step: 4162. Total energy = 2765.5014 kcal/mol (2762.8451 without restraints) Performing minimization step: 4163. Total energy = 2765.3307 kcal/mol (2762.6751 without restraints) Performing minimization step: 4164. Total energy = 2765.1598 kcal/mol (2762.5050 without restraints) Performing minimization step: 4165. Total energy = 2764.9890 kcal/mol (2762.3350 without restraints) Performing minimization step: 4166. Total energy = 2764.8184 kcal/mol (2762.1649 without restraints) Performing minimization step: 4167. Total energy = 2764.6476 kcal/mol (2761.9949 without restraints) Performing minimization step: 4168. Total energy = 2764.4767 kcal/mol (2761.8246 without restraints) Performing minimization step: 4169. Total energy = 2764.3061 kcal/mol (2761.6547 without restraints) Performing minimization step: 4170. Total energy = 2764.1358 kcal/mol (2761.4852 without restraints) Performing minimization step: 4171. Total energy = 2763.9652 kcal/mol (2761.3151 without restraints) Performing minimization step: 4172. Total energy = 2763.7946 kcal/mol (2761.1455 without restraints) Performing minimization step: 4173. Total energy = 2763.6246 kcal/mol (2760.9761 without restraints) Performing minimization step: 4174. Total energy = 2763.4542 kcal/mol (2760.8065 without restraints) Performing minimization step: 4175. Total energy = 2763.2839 kcal/mol (2760.6368 without restraints) Performing minimization step: 4176. Total energy = 2763.1135 kcal/mol (2760.4670 without restraints) Performing minimization step: 4177. Total energy = 2762.9431 kcal/mol (2760.2974 without restraints) Performing minimization step: 4178. Total energy = 2762.7733 kcal/mol (2760.1283 without restraints) Performing minimization step: 4179. Total energy = 2762.6031 kcal/mol (2759.9588 without restraints) Performing minimization step: 4180. Total energy = 2762.4327 kcal/mol (2759.7892 without restraints) Performing minimization step: 4181. Total energy = 2762.2626 kcal/mol (2759.6197 without restraints) Performing minimization step: 4182. Total energy = 2762.0925 kcal/mol (2759.4503 without restraints) Performing minimization step: 4183. Total energy = 2761.9221 kcal/mol (2759.2806 without restraints) Performing minimization step: 4184. Total energy = 2761.7523 kcal/mol (2759.1115 without restraints) Performing minimization step: 4185. Total energy = 2761.5827 kcal/mol (2758.9426 without restraints) Performing minimization step: 4186. Total energy = 2761.4131 kcal/mol (2758.7737 without restraints) Performing minimization step: 4187. Total energy = 2761.2430 kcal/mol (2758.6043 without restraints) Performing minimization step: 4188. Total energy = 2761.0732 kcal/mol (2758.4353 without restraints) Performing minimization step: 4189. Total energy = 2760.9042 kcal/mol (2758.2671 without restraints) Performing minimization step: 4190. Total energy = 2760.7341 kcal/mol (2758.0975 without restraints) Performing minimization step: 4191. Total energy = 2760.5646 kcal/mol (2757.9286 without restraints) Performing minimization step: 4192. Total energy = 2760.3945 kcal/mol (2757.7593 without restraints) Performing minimization step: 4193. Total energy = 2760.2243 kcal/mol (2757.5898 without restraints) Performing minimization step: 4194. Total energy = 2760.0546 kcal/mol (2757.4208 without restraints) Performing minimization step: 4195. Total energy = 2759.8847 kcal/mol (2757.2515 without restraints) Performing minimization step: 4196. Total energy = 2759.7149 kcal/mol (2757.0825 without restraints) Performing minimization step: 4197. Total energy = 2759.5451 kcal/mol (2756.9134 without restraints) Performing minimization step: 4198. Total energy = 2759.3758 kcal/mol (2756.7447 without restraints) Performing minimization step: 4199. Total energy = 2759.2060 kcal/mol (2756.5757 without restraints) Performing minimization step: 4200. Total energy = 2759.0366 kcal/mol (2756.4069 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 2758.8671 kcal/mol (2756.2381 without restraints) Performing minimization step: 4202. Total energy = 2758.6973 kcal/mol (2756.0691 without restraints) Performing minimization step: 4203. Total energy = 2758.5277 kcal/mol (2755.9001 without restraints) Performing minimization step: 4204. Total energy = 2758.3579 kcal/mol (2755.7310 without restraints) Performing minimization step: 4205. Total energy = 2758.1881 kcal/mol (2755.5619 without restraints) Performing minimization step: 4206. Total energy = 2758.0185 kcal/mol (2755.3929 without restraints) Performing minimization step: 4207. Total energy = 2757.8485 kcal/mol (2755.2235 without restraints) Performing minimization step: 4208. Total energy = 2757.6786 kcal/mol (2755.0543 without restraints) Performing minimization step: 4209. Total energy = 2757.5090 kcal/mol (2754.8855 without restraints) Performing minimization step: 4210. Total energy = 2757.3398 kcal/mol (2754.7170 without restraints) Performing minimization step: 4211. Total energy = 2757.1700 kcal/mol (2754.5479 without restraints) Performing minimization step: 4212. Total energy = 2757.0000 kcal/mol (2754.3786 without restraints) Performing minimization step: 4213. Total energy = 2756.8303 kcal/mol (2754.2096 without restraints) Performing minimization step: 4214. Total energy = 2756.6607 kcal/mol (2754.0405 without restraints) Performing minimization step: 4215. Total energy = 2756.4913 kcal/mol (2753.8720 without restraints) Performing minimization step: 4216. Total energy = 2756.3216 kcal/mol (2753.7029 without restraints) Performing minimization step: 4217. Total energy = 2756.1518 kcal/mol (2753.5338 without restraints) Performing minimization step: 4218. Total energy = 2755.9820 kcal/mol (2753.3647 without restraints) Performing minimization step: 4219. Total energy = 2755.8122 kcal/mol (2753.1955 without restraints) Performing minimization step: 4220. Total energy = 2755.6424 kcal/mol (2753.0264 without restraints) Performing minimization step: 4221. Total energy = 2755.4726 kcal/mol (2752.8574 without restraints) Performing minimization step: 4222. Total energy = 2755.3029 kcal/mol (2752.6882 without restraints) Performing minimization step: 4223. Total energy = 2755.1329 kcal/mol (2752.5190 without restraints) Performing minimization step: 4224. Total energy = 2754.9632 kcal/mol (2752.3500 without restraints) Performing minimization step: 4225. Total energy = 2754.7937 kcal/mol (2752.1811 without restraints) Performing minimization step: 4226. Total energy = 2754.6240 kcal/mol (2752.0121 without restraints) Performing minimization step: 4227. Total energy = 2754.4541 kcal/mol (2751.8429 without restraints) Performing minimization step: 4228. Total energy = 2754.2843 kcal/mol (2751.6737 without restraints) Performing minimization step: 4229. Total energy = 2754.1145 kcal/mol (2751.5047 without restraints) Performing minimization step: 4230. Total energy = 2753.9445 kcal/mol (2751.3352 without restraints) Performing minimization step: 4231. Total energy = 2753.7744 kcal/mol (2751.1659 without restraints) Performing minimization step: 4232. Total energy = 2753.6048 kcal/mol (2750.9969 without restraints) Performing minimization step: 4233. Total energy = 2753.4347 kcal/mol (2750.8275 without restraints) Performing minimization step: 4234. Total energy = 2753.2652 kcal/mol (2750.6587 without restraints) Performing minimization step: 4235. Total energy = 2753.0951 kcal/mol (2750.4894 without restraints) Performing minimization step: 4236. Total energy = 2752.9253 kcal/mol (2750.3202 without restraints) Performing minimization step: 4237. Total energy = 2752.7557 kcal/mol (2750.1512 without restraints) Performing minimization step: 4238. Total energy = 2752.5854 kcal/mol (2749.9816 without restraints) Performing minimization step: 4239. Total energy = 2752.4153 kcal/mol (2749.8122 without restraints) Performing minimization step: 4240. Total energy = 2752.2454 kcal/mol (2749.6428 without restraints) Performing minimization step: 4241. Total energy = 2752.0750 kcal/mol (2749.4733 without restraints) Performing minimization step: 4242. Total energy = 2751.9052 kcal/mol (2749.3041 without restraints) Performing minimization step: 4243. Total energy = 2751.7352 kcal/mol (2749.1347 without restraints) Performing minimization step: 4244. Total energy = 2751.5651 kcal/mol (2748.9653 without restraints) Performing minimization step: 4245. Total energy = 2751.3949 kcal/mol (2748.7957 without restraints) Performing minimization step: 4246. Total energy = 2751.2246 kcal/mol (2748.6261 without restraints) Performing minimization step: 4247. Total energy = 2751.0540 kcal/mol (2748.4563 without restraints) Performing minimization step: 4248. Total energy = 2750.8839 kcal/mol (2748.2867 without restraints) Performing minimization step: 4249. Total energy = 2750.7135 kcal/mol (2748.1170 without restraints) Performing minimization step: 4250. Total energy = 2750.5439 kcal/mol (2747.9481 without restraints) Performing minimization step: 4251. Total energy = 2750.3732 kcal/mol (2747.7780 without restraints) Performing minimization step: 4252. Total energy = 2750.2032 kcal/mol (2747.6087 without restraints) Performing minimization step: 4253. Total energy = 2750.0327 kcal/mol (2747.4390 without restraints) Performing minimization step: 4254. Total energy = 2749.8627 kcal/mol (2747.2694 without restraints) Performing minimization step: 4255. Total energy = 2749.6922 kcal/mol (2747.0996 without restraints) Performing minimization step: 4256. Total energy = 2749.5214 kcal/mol (2746.9296 without restraints) Performing minimization step: 4257. Total energy = 2749.3509 kcal/mol (2746.7597 without restraints) Performing minimization step: 4258. Total energy = 2749.1801 kcal/mol (2746.5895 without restraints) Performing minimization step: 4259. Total energy = 2749.0092 kcal/mol (2746.4193 without restraints) Performing minimization step: 4260. Total energy = 2748.8382 kcal/mol (2746.2489 without restraints) Performing minimization step: 4261. Total energy = 2748.6672 kcal/mol (2746.0786 without restraints) Performing minimization step: 4262. Total energy = 2748.4962 kcal/mol (2745.9083 without restraints) Performing minimization step: 4263. Total energy = 2748.3248 kcal/mol (2745.7373 without restraints) Performing minimization step: 4264. Total energy = 2748.1543 kcal/mol (2745.5677 without restraints) Performing minimization step: 4265. Total energy = 2747.9831 kcal/mol (2745.3971 without restraints) Performing minimization step: 4266. Total energy = 2747.8124 kcal/mol (2745.2270 without restraints) Performing minimization step: 4267. Total energy = 2747.6409 kcal/mol (2745.0563 without restraints) Performing minimization step: 4268. Total energy = 2747.4699 kcal/mol (2744.8859 without restraints) Performing minimization step: 4269. Total energy = 2747.2983 kcal/mol (2744.7149 without restraints) Performing minimization step: 4270. Total energy = 2747.1268 kcal/mol (2744.5439 without restraints) Performing minimization step: 4271. Total energy = 2746.9551 kcal/mol (2744.3729 without restraints) Performing minimization step: 4272. Total energy = 2746.7837 kcal/mol (2744.2021 without restraints) Performing minimization step: 4273. Total energy = 2746.6119 kcal/mol (2744.0310 without restraints) Performing minimization step: 4274. Total energy = 2746.4400 kcal/mol (2743.8597 without restraints) Performing minimization step: 4275. Total energy = 2746.2684 kcal/mol (2743.6889 without restraints) Performing minimization step: 4276. Total energy = 2746.0966 kcal/mol (2743.5177 without restraints) Performing minimization step: 4277. Total energy = 2745.9244 kcal/mol (2743.3460 without restraints) Performing minimization step: 4278. Total energy = 2745.7526 kcal/mol (2743.1749 without restraints) Performing minimization step: 4279. Total energy = 2745.5805 kcal/mol (2743.0034 without restraints) Performing minimization step: 4280. Total energy = 2745.4081 kcal/mol (2742.8316 without restraints) Performing minimization step: 4281. Total energy = 2745.2355 kcal/mol (2742.6598 without restraints) Performing minimization step: 4282. Total energy = 2745.0631 kcal/mol (2742.4880 without restraints) Performing minimization step: 4283. Total energy = 2744.8907 kcal/mol (2742.3161 without restraints) Performing minimization step: 4284. Total energy = 2744.7178 kcal/mol (2742.1438 without restraints) Performing minimization step: 4285. Total energy = 2744.5451 kcal/mol (2741.9718 without restraints) Performing minimization step: 4286. Total energy = 2744.3721 kcal/mol (2741.7995 without restraints) Performing minimization step: 4287. Total energy = 2744.1990 kcal/mol (2741.6270 without restraints) Performing minimization step: 4288. Total energy = 2744.0259 kcal/mol (2741.4546 without restraints) Performing minimization step: 4289. Total energy = 2743.8525 kcal/mol (2741.2818 without restraints) Performing minimization step: 4290. Total energy = 2743.6791 kcal/mol (2741.1089 without restraints) Performing minimization step: 4291. Total energy = 2743.5053 kcal/mol (2740.9358 without restraints) Performing minimization step: 4292. Total energy = 2743.3319 kcal/mol (2740.7630 without restraints) Performing minimization step: 4293. Total energy = 2743.1585 kcal/mol (2740.5903 without restraints) Performing minimization step: 4294. Total energy = 2742.9842 kcal/mol (2740.4166 without restraints) Performing minimization step: 4295. Total energy = 2742.8102 kcal/mol (2740.2431 without restraints) Performing minimization step: 4296. Total energy = 2742.6361 kcal/mol (2740.0696 without restraints) Performing minimization step: 4297. Total energy = 2742.4618 kcal/mol (2739.8959 without restraints) Performing minimization step: 4298. Total energy = 2742.2874 kcal/mol (2739.7222 without restraints) Performing minimization step: 4299. Total energy = 2742.1130 kcal/mol (2739.5484 without restraints) Performing minimization step: 4300. Total energy = 2741.9383 kcal/mol (2739.3743 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 2741.7641 kcal/mol (2739.2008 without restraints) Performing minimization step: 4302. Total energy = 2741.5897 kcal/mol (2739.0269 without restraints) Performing minimization step: 4303. Total energy = 2741.4146 kcal/mol (2738.8524 without restraints) Performing minimization step: 4304. Total energy = 2741.2393 kcal/mol (2738.6778 without restraints) Performing minimization step: 4305. Total energy = 2741.0635 kcal/mol (2738.5024 without restraints) Performing minimization step: 4306. Total energy = 2740.8876 kcal/mol (2738.3272 without restraints) Performing minimization step: 4307. Total energy = 2740.7120 kcal/mol (2738.1523 without restraints) Performing minimization step: 4308. Total energy = 2740.5363 kcal/mol (2737.9772 without restraints) Performing minimization step: 4309. Total energy = 2740.3604 kcal/mol (2737.8020 without restraints) Performing minimization step: 4310. Total energy = 2740.1843 kcal/mol (2737.6263 without restraints) Performing minimization step: 4311. Total energy = 2740.0079 kcal/mol (2737.4506 without restraints) Performing minimization step: 4312. Total energy = 2739.8316 kcal/mol (2737.2749 without restraints) Performing minimization step: 4313. Total energy = 2739.6548 kcal/mol (2737.0987 without restraints) Performing minimization step: 4314. Total energy = 2739.4784 kcal/mol (2736.9229 without restraints) Performing minimization step: 4315. Total energy = 2739.3015 kcal/mol (2736.7466 without restraints) Performing minimization step: 4316. Total energy = 2739.1245 kcal/mol (2736.5701 without restraints) Performing minimization step: 4317. Total energy = 2738.9469 kcal/mol (2736.3930 without restraints) Performing minimization step: 4318. Total energy = 2738.7692 kcal/mol (2736.2160 without restraints) Performing minimization step: 4319. Total energy = 2738.5916 kcal/mol (2736.0391 without restraints) Performing minimization step: 4320. Total energy = 2738.4139 kcal/mol (2735.8619 without restraints) Performing minimization step: 4321. Total energy = 2738.2358 kcal/mol (2735.6845 without restraints) Performing minimization step: 4322. Total energy = 2738.0577 kcal/mol (2735.5069 without restraints) Performing minimization step: 4323. Total energy = 2737.8794 kcal/mol (2735.3292 without restraints) Performing minimization step: 4324. Total energy = 2737.7006 kcal/mol (2735.1509 without restraints) Performing minimization step: 4325. Total energy = 2737.5217 kcal/mol (2734.9726 without restraints) Performing minimization step: 4326. Total energy = 2737.3428 kcal/mol (2734.7943 without restraints) Performing minimization step: 4327. Total energy = 2737.1635 kcal/mol (2734.6156 without restraints) Performing minimization step: 4328. Total energy = 2736.9837 kcal/mol (2734.4363 without restraints) Performing minimization step: 4329. Total energy = 2736.8039 kcal/mol (2734.2572 without restraints) Performing minimization step: 4330. Total energy = 2736.6239 kcal/mol (2734.0777 without restraints) Performing minimization step: 4331. Total energy = 2736.4435 kcal/mol (2733.8977 without restraints) Performing minimization step: 4332. Total energy = 2736.2628 kcal/mol (2733.7177 without restraints) Performing minimization step: 4333. Total energy = 2736.0820 kcal/mol (2733.5374 without restraints) Performing minimization step: 4334. Total energy = 2735.9010 kcal/mol (2733.3570 without restraints) Performing minimization step: 4335. Total energy = 2735.7199 kcal/mol (2733.1765 without restraints) Performing minimization step: 4336. Total energy = 2735.5380 kcal/mol (2732.9951 without restraints) Performing minimization step: 4337. Total energy = 2735.3566 kcal/mol (2732.8144 without restraints) Performing minimization step: 4338. Total energy = 2735.1746 kcal/mol (2732.6329 without restraints) Performing minimization step: 4339. Total energy = 2734.9926 kcal/mol (2732.4513 without restraints) Performing minimization step: 4340. Total energy = 2734.8099 kcal/mol (2732.2693 without restraints) Performing minimization step: 4341. Total energy = 2734.6271 kcal/mol (2732.0871 without restraints) Performing minimization step: 4342. Total energy = 2734.4438 kcal/mol (2731.9043 without restraints) Performing minimization step: 4343. Total energy = 2734.2606 kcal/mol (2731.7219 without restraints) Performing minimization step: 4344. Total energy = 2734.0773 kcal/mol (2731.5389 without restraints) Performing minimization step: 4345. Total energy = 2733.8935 kcal/mol (2731.3556 without restraints) Performing minimization step: 4346. Total energy = 2733.7095 kcal/mol (2731.1721 without restraints) Performing minimization step: 4347. Total energy = 2733.5249 kcal/mol (2730.9882 without restraints) Performing minimization step: 4348. Total energy = 2733.3403 kcal/mol (2730.8041 without restraints) Performing minimization step: 4349. Total energy = 2733.1552 kcal/mol (2730.6195 without restraints) Performing minimization step: 4350. Total energy = 2732.9698 kcal/mol (2730.4347 without restraints) Performing minimization step: 4351. Total energy = 2732.7843 kcal/mol (2730.2497 without restraints) Performing minimization step: 4352. Total energy = 2732.5984 kcal/mol (2730.0644 without restraints) Performing minimization step: 4353. Total energy = 2732.4121 kcal/mol (2729.8786 without restraints) Performing minimization step: 4354. Total energy = 2732.2256 kcal/mol (2729.6926 without restraints) Performing minimization step: 4355. Total energy = 2732.0387 kcal/mol (2729.5063 without restraints) Performing minimization step: 4356. Total energy = 2731.8517 kcal/mol (2729.3197 without restraints) Performing minimization step: 4357. Total energy = 2731.6640 kcal/mol (2729.1326 without restraints) Performing minimization step: 4358. Total energy = 2731.4757 kcal/mol (2728.9446 without restraints) Performing minimization step: 4359. Total energy = 2731.2874 kcal/mol (2728.7570 without restraints) Performing minimization step: 4360. Total energy = 2731.0983 kcal/mol (2728.5684 without restraints) Performing minimization step: 4361. Total energy = 2730.9092 kcal/mol (2728.3799 without restraints) Performing minimization step: 4362. Total energy = 2730.7198 kcal/mol (2728.1910 without restraints) Performing minimization step: 4363. Total energy = 2730.5301 kcal/mol (2728.0018 without restraints) Performing minimization step: 4364. Total energy = 2730.3401 kcal/mol (2727.8124 without restraints) Performing minimization step: 4365. Total energy = 2730.1497 kcal/mol (2727.6225 without restraints) Performing minimization step: 4366. Total energy = 2729.9595 kcal/mol (2727.4327 without restraints) Performing minimization step: 4367. Total energy = 2729.7678 kcal/mol (2727.2414 without restraints) Performing minimization step: 4368. Total energy = 2729.5759 kcal/mol (2727.0503 without restraints) Performing minimization step: 4369. Total energy = 2729.3841 kcal/mol (2726.8588 without restraints) Performing minimization step: 4370. Total energy = 2729.1919 kcal/mol (2726.6671 without restraints) Performing minimization step: 4371. Total energy = 2728.9994 kcal/mol (2726.4751 without restraints) Performing minimization step: 4372. Total energy = 2728.8062 kcal/mol (2726.2824 without restraints) Performing minimization step: 4373. Total energy = 2728.6129 kcal/mol (2726.0895 without restraints) Performing minimization step: 4374. Total energy = 2728.4186 kcal/mol (2725.8958 without restraints) Performing minimization step: 4375. Total energy = 2728.2245 kcal/mol (2725.7024 without restraints) Performing minimization step: 4376. Total energy = 2728.0298 kcal/mol (2725.5081 without restraints) Performing minimization step: 4377. Total energy = 2727.8344 kcal/mol (2725.3131 without restraints) Performing minimization step: 4378. Total energy = 2727.6387 kcal/mol (2725.1177 without restraints) Performing minimization step: 4379. Total energy = 2727.4424 kcal/mol (2724.9221 without restraints) Performing minimization step: 4380. Total energy = 2727.2459 kcal/mol (2724.7261 without restraints) Performing minimization step: 4381. Total energy = 2727.0489 kcal/mol (2724.5296 without restraints) Performing minimization step: 4382. Total energy = 2726.8519 kcal/mol (2724.3331 without restraints) Performing minimization step: 4383. Total energy = 2726.6544 kcal/mol (2724.1359 without restraints) Performing minimization step: 4384. Total energy = 2726.4558 kcal/mol (2723.9379 without restraints) Performing minimization step: 4385. Total energy = 2726.2567 kcal/mol (2723.7392 without restraints) Performing minimization step: 4386. Total energy = 2726.0577 kcal/mol (2723.5407 without restraints) Performing minimization step: 4387. Total energy = 2725.8580 kcal/mol (2723.3414 without restraints) Performing minimization step: 4388. Total energy = 2725.6580 kcal/mol (2723.1419 without restraints) Performing minimization step: 4389. Total energy = 2725.4571 kcal/mol (2722.9415 without restraints) Performing minimization step: 4390. Total energy = 2725.2559 kcal/mol (2722.7408 without restraints) Performing minimization step: 4391. Total energy = 2725.0541 kcal/mol (2722.5393 without restraints) Performing minimization step: 4392. Total energy = 2724.8515 kcal/mol (2722.3373 without restraints) Performing minimization step: 4393. Total energy = 2724.6487 kcal/mol (2722.1349 without restraints) Performing minimization step: 4394. Total energy = 2724.4455 kcal/mol (2721.9322 without restraints) Performing minimization step: 4395. Total energy = 2724.2419 kcal/mol (2721.7288 without restraints) Performing minimization step: 4396. Total energy = 2724.0376 kcal/mol (2721.5251 without restraints) Performing minimization step: 4397. Total energy = 2723.8331 kcal/mol (2721.3211 without restraints) Performing minimization step: 4398. Total energy = 2723.6278 kcal/mol (2721.1163 without restraints) Performing minimization step: 4399. Total energy = 2723.4221 kcal/mol (2720.9110 without restraints) Performing minimization step: 4400. Total energy = 2723.2161 kcal/mol (2720.7054 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 2723.0093 kcal/mol (2720.4991 without restraints) Performing minimization step: 4402. Total energy = 2722.8021 kcal/mol (2720.2923 without restraints) Performing minimization step: 4403. Total energy = 2722.5947 kcal/mol (2720.0853 without restraints) Performing minimization step: 4404. Total energy = 2722.3863 kcal/mol (2719.8773 without restraints) Performing minimization step: 4405. Total energy = 2722.1775 kcal/mol (2719.6690 without restraints) Performing minimization step: 4406. Total energy = 2721.9680 kcal/mol (2719.4599 without restraints) Performing minimization step: 4407. Total energy = 2721.7580 kcal/mol (2719.2503 without restraints) Performing minimization step: 4408. Total energy = 2721.5473 kcal/mol (2719.0401 without restraints) Performing minimization step: 4409. Total energy = 2721.3362 kcal/mol (2718.8294 without restraints) Performing minimization step: 4410. Total energy = 2721.1245 kcal/mol (2718.6181 without restraints) Performing minimization step: 4411. Total energy = 2720.9121 kcal/mol (2718.4060 without restraints) Performing minimization step: 4412. Total energy = 2720.6991 kcal/mol (2718.1936 without restraints) Performing minimization step: 4413. Total energy = 2720.4859 kcal/mol (2717.9808 without restraints) Performing minimization step: 4414. Total energy = 2720.2717 kcal/mol (2717.7667 without restraints) Performing minimization step: 4415. Total energy = 2720.0575 kcal/mol (2717.5532 without restraints) Performing minimization step: 4416. Total energy = 2719.8421 kcal/mol (2717.3382 without restraints) Performing minimization step: 4417. Total energy = 2719.6263 kcal/mol (2717.1228 without restraints) Performing minimization step: 4418. Total energy = 2719.4098 kcal/mol (2716.9066 without restraints) Performing minimization step: 4419. Total energy = 2719.1927 kcal/mol (2716.6900 without restraints) Performing minimization step: 4420. Total energy = 2718.9754 kcal/mol (2716.4732 without restraints) Performing minimization step: 4421. Total energy = 2718.7575 kcal/mol (2716.2556 without restraints) Performing minimization step: 4422. Total energy = 2718.5390 kcal/mol (2716.0374 without restraints) Performing minimization step: 4423. Total energy = 2718.3198 kcal/mol (2715.8188 without restraints) Performing minimization step: 4424. Total energy = 2718.0997 kcal/mol (2715.5991 without restraints) Performing minimization step: 4425. Total energy = 2717.8793 kcal/mol (2715.3789 without restraints) Performing minimization step: 4426. Total energy = 2717.6581 kcal/mol (2715.1581 without restraints) Performing minimization step: 4427. Total energy = 2717.4364 kcal/mol (2714.9369 without restraints) Performing minimization step: 4428. Total energy = 2717.2140 kcal/mol (2714.7148 without restraints) Performing minimization step: 4429. Total energy = 2716.9909 kcal/mol (2714.4921 without restraints) Performing minimization step: 4430. Total energy = 2716.7672 kcal/mol (2714.2688 without restraints) Performing minimization step: 4431. Total energy = 2716.5431 kcal/mol (2714.0450 without restraints) Performing minimization step: 4432. Total energy = 2716.3184 kcal/mol (2713.8206 without restraints) Performing minimization step: 4433. Total energy = 2716.0929 kcal/mol (2713.5958 without restraints) Performing minimization step: 4434. Total energy = 2715.8672 kcal/mol (2713.3703 without restraints) Performing minimization step: 4435. Total energy = 2715.6404 kcal/mol (2713.1438 without restraints) Performing minimization step: 4436. Total energy = 2715.4125 kcal/mol (2712.9163 without restraints) Performing minimization step: 4437. Total energy = 2715.1846 kcal/mol (2712.6888 without restraints) Performing minimization step: 4438. Total energy = 2714.9561 kcal/mol (2712.4607 without restraints) Performing minimization step: 4439. Total energy = 2714.7269 kcal/mol (2712.2319 without restraints) Performing minimization step: 4440. Total energy = 2714.4976 kcal/mol (2712.0029 without restraints) Performing minimization step: 4441. Total energy = 2714.2670 kcal/mol (2711.7726 without restraints) Performing minimization step: 4442. Total energy = 2714.0363 kcal/mol (2711.5423 without restraints) Performing minimization step: 4443. Total energy = 2713.8043 kcal/mol (2711.3107 without restraints) Performing minimization step: 4444. Total energy = 2713.5718 kcal/mol (2711.0785 without restraints) Performing minimization step: 4445. Total energy = 2713.3384 kcal/mol (2710.8454 without restraints) Performing minimization step: 4446. Total energy = 2713.1045 kcal/mol (2710.6119 without restraints) Performing minimization step: 4447. Total energy = 2712.8700 kcal/mol (2710.3778 without restraints) Performing minimization step: 4448. Total energy = 2712.6348 kcal/mol (2710.1430 without restraints) Performing minimization step: 4449. Total energy = 2712.3989 kcal/mol (2709.9074 without restraints) Performing minimization step: 4450. Total energy = 2712.1623 kcal/mol (2709.6713 without restraints) Performing minimization step: 4451. Total energy = 2711.9255 kcal/mol (2709.4348 without restraints) Performing minimization step: 4452. Total energy = 2711.6880 kcal/mol (2709.1975 without restraints) Performing minimization step: 4453. Total energy = 2711.4492 kcal/mol (2708.9592 without restraints) Performing minimization step: 4454. Total energy = 2711.2102 kcal/mol (2708.7205 without restraints) Performing minimization step: 4455. Total energy = 2710.9707 kcal/mol (2708.4813 without restraints) Performing minimization step: 4456. Total energy = 2710.7309 kcal/mol (2708.2420 without restraints) Performing minimization step: 4457. Total energy = 2710.4901 kcal/mol (2708.0014 without restraints) Performing minimization step: 4458. Total energy = 2710.2486 kcal/mol (2707.7601 without restraints) Performing minimization step: 4459. Total energy = 2710.0064 kcal/mol (2707.5184 without restraints) Performing minimization step: 4460. Total energy = 2709.7639 kcal/mol (2707.2762 without restraints) Performing minimization step: 4461. Total energy = 2709.5209 kcal/mol (2707.0336 without restraints) Performing minimization step: 4462. Total energy = 2709.2774 kcal/mol (2706.7905 without restraints) Performing minimization step: 4463. Total energy = 2709.0332 kcal/mol (2706.5465 without restraints) Performing minimization step: 4464. Total energy = 2708.7884 kcal/mol (2706.3021 without restraints) Performing minimization step: 4465. Total energy = 2708.5427 kcal/mol (2706.0566 without restraints) Performing minimization step: 4466. Total energy = 2708.2966 kcal/mol (2705.8109 without restraints) Performing minimization step: 4467. Total energy = 2708.0496 kcal/mol (2705.5642 without restraints) Performing minimization step: 4468. Total energy = 2707.8018 kcal/mol (2705.3168 without restraints) Performing minimization step: 4469. Total energy = 2707.5536 kcal/mol (2705.0689 without restraints) Performing minimization step: 4470. Total energy = 2707.3049 kcal/mol (2704.8205 without restraints) Performing minimization step: 4471. Total energy = 2707.0553 kcal/mol (2704.5713 without restraints) Performing minimization step: 4472. Total energy = 2706.8052 kcal/mol (2704.3215 without restraints) Performing minimization step: 4473. Total energy = 2706.5547 kcal/mol (2704.0713 without restraints) Performing minimization step: 4474. Total energy = 2706.3039 kcal/mol (2703.8210 without restraints) Performing minimization step: 4475. Total energy = 2706.0526 kcal/mol (2703.5698 without restraints) Performing minimization step: 4476. Total energy = 2705.8006 kcal/mol (2703.3183 without restraints) Performing minimization step: 4477. Total energy = 2705.5477 kcal/mol (2703.0657 without restraints) Performing minimization step: 4478. Total energy = 2705.2948 kcal/mol (2702.8130 without restraints) Performing minimization step: 4479. Total energy = 2705.0408 kcal/mol (2702.5594 without restraints) Performing minimization step: 4480. Total energy = 2704.7865 kcal/mol (2702.3054 without restraints) Performing minimization step: 4481. Total energy = 2704.5313 kcal/mol (2702.0504 without restraints) Performing minimization step: 4482. Total energy = 2704.2756 kcal/mol (2701.7952 without restraints) Performing minimization step: 4483. Total energy = 2704.0197 kcal/mol (2701.5397 without restraints) Performing minimization step: 4484. Total energy = 2703.7629 kcal/mol (2701.2831 without restraints) Performing minimization step: 4485. Total energy = 2703.5057 kcal/mol (2701.0262 without restraints) Performing minimization step: 4486. Total energy = 2703.2480 kcal/mol (2700.7688 without restraints) Performing minimization step: 4487. Total energy = 2702.9898 kcal/mol (2700.5110 without restraints) Performing minimization step: 4488. Total energy = 2702.7311 kcal/mol (2700.2526 without restraints) Performing minimization step: 4489. Total energy = 2702.4719 kcal/mol (2699.9937 without restraints) Performing minimization step: 4490. Total energy = 2702.2122 kcal/mol (2699.7344 without restraints) Performing minimization step: 4491. Total energy = 2701.9518 kcal/mol (2699.4743 without restraints) Performing minimization step: 4492. Total energy = 2701.6912 kcal/mol (2699.2139 without restraints) Performing minimization step: 4493. Total energy = 2701.4299 kcal/mol (2698.9531 without restraints) Performing minimization step: 4494. Total energy = 2701.1683 kcal/mol (2698.6916 without restraints) Performing minimization step: 4495. Total energy = 2700.9061 kcal/mol (2698.4298 without restraints) Performing minimization step: 4496. Total energy = 2700.6438 kcal/mol (2698.1680 without restraints) Performing minimization step: 4497. Total energy = 2700.3818 kcal/mol (2697.9063 without restraints) Performing minimization step: 4498. Total energy = 2700.1185 kcal/mol (2697.6431 without restraints) Performing minimization step: 4499. Total energy = 2699.8546 kcal/mol (2697.3795 without restraints) Performing minimization step: 4500. Total energy = 2699.5899 kcal/mol (2697.1152 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 2699.3251 kcal/mol (2696.8507 without restraints) Performing minimization step: 4502. Total energy = 2699.0601 kcal/mol (2696.5860 without restraints) Performing minimization step: 4503. Total energy = 2698.7948 kcal/mol (2696.3211 without restraints) Performing minimization step: 4504. Total energy = 2698.5285 kcal/mol (2696.0550 without restraints) Performing minimization step: 4505. Total energy = 2698.2625 kcal/mol (2695.7894 without restraints) Performing minimization step: 4506. Total energy = 2697.9957 kcal/mol (2695.5230 without restraints) Performing minimization step: 4507. Total energy = 2697.7289 kcal/mol (2695.2565 without restraints) Performing minimization step: 4508. Total energy = 2697.4616 kcal/mol (2694.9894 without restraints) Performing minimization step: 4509. Total energy = 2697.1937 kcal/mol (2694.7219 without restraints) Performing minimization step: 4510. Total energy = 2696.9259 kcal/mol (2694.4546 without restraints) Performing minimization step: 4511. Total energy = 2696.6575 kcal/mol (2694.1863 without restraints) Performing minimization step: 4512. Total energy = 2696.3892 kcal/mol (2693.9186 without restraints) Performing minimization step: 4513. Total energy = 2696.1201 kcal/mol (2693.6496 without restraints) Performing minimization step: 4514. Total energy = 2695.8506 kcal/mol (2693.3805 without restraints) Performing minimization step: 4515. Total energy = 2695.5806 kcal/mol (2693.1107 without restraints) Performing minimization step: 4516. Total energy = 2695.3106 kcal/mol (2692.8411 without restraints) Performing minimization step: 4517. Total energy = 2695.0405 kcal/mol (2692.5714 without restraints) Performing minimization step: 4518. Total energy = 2694.7698 kcal/mol (2692.3008 without restraints) Performing minimization step: 4519. Total energy = 2694.4989 kcal/mol (2692.0303 without restraints) Performing minimization step: 4520. Total energy = 2694.2275 kcal/mol (2691.7592 without restraints) Performing minimization step: 4521. Total energy = 2693.9559 kcal/mol (2691.4881 without restraints) Performing minimization step: 4522. Total energy = 2693.6840 kcal/mol (2691.2164 without restraints) Performing minimization step: 4523. Total energy = 2693.4118 kcal/mol (2690.9445 without restraints) Performing minimization step: 4524. Total energy = 2693.1396 kcal/mol (2690.6727 without restraints) Performing minimization step: 4525. Total energy = 2692.8667 kcal/mol (2690.4001 without restraints) Performing minimization step: 4526. Total energy = 2692.5938 kcal/mol (2690.1274 without restraints) Performing minimization step: 4527. Total energy = 2692.3208 kcal/mol (2689.8548 without restraints) Performing minimization step: 4528. Total energy = 2692.0475 kcal/mol (2689.5818 without restraints) Performing minimization step: 4529. Total energy = 2691.7742 kcal/mol (2689.3088 without restraints) Performing minimization step: 4530. Total energy = 2691.5004 kcal/mol (2689.0354 without restraints) Performing minimization step: 4531. Total energy = 2691.2264 kcal/mol (2688.7617 without restraints) Performing minimization step: 4532. Total energy = 2690.9523 kcal/mol (2688.4879 without restraints) Performing minimization step: 4533. Total energy = 2690.6780 kcal/mol (2688.2139 without restraints) Performing minimization step: 4534. Total energy = 2690.4034 kcal/mol (2687.9397 without restraints) Performing minimization step: 4535. Total energy = 2690.1287 kcal/mol (2687.6653 without restraints) Performing minimization step: 4536. Total energy = 2689.8541 kcal/mol (2687.3910 without restraints) Performing minimization step: 4537. Total energy = 2689.5790 kcal/mol (2687.1163 without restraints) Performing minimization step: 4538. Total energy = 2689.3039 kcal/mol (2686.8415 without restraints) Performing minimization step: 4539. Total energy = 2689.0288 kcal/mol (2686.5667 without restraints) Performing minimization step: 4540. Total energy = 2688.7533 kcal/mol (2686.2916 without restraints) Performing minimization step: 4541. Total energy = 2688.4781 kcal/mol (2686.0168 without restraints) Performing minimization step: 4542. Total energy = 2688.2025 kcal/mol (2685.7414 without restraints) Performing minimization step: 4543. Total energy = 2687.9268 kcal/mol (2685.4660 without restraints) Performing minimization step: 4544. Total energy = 2687.6509 kcal/mol (2685.1905 without restraints) Performing minimization step: 4545. Total energy = 2687.3749 kcal/mol (2684.9148 without restraints) Performing minimization step: 4546. Total energy = 2687.0988 kcal/mol (2684.6391 without restraints) Performing minimization step: 4547. Total energy = 2686.8229 kcal/mol (2684.3634 without restraints) Performing minimization step: 4548. Total energy = 2686.5466 kcal/mol (2684.0875 without restraints) Performing minimization step: 4549. Total energy = 2686.2701 kcal/mol (2683.8114 without restraints) Performing minimization step: 4550. Total energy = 2685.9938 kcal/mol (2683.5354 without restraints) Performing minimization step: 4551. Total energy = 2685.7175 kcal/mol (2683.2594 without restraints) Performing minimization step: 4552. Total energy = 2685.4410 kcal/mol (2682.9833 without restraints) Performing minimization step: 4553. Total energy = 2685.1646 kcal/mol (2682.7072 without restraints) Performing minimization step: 4554. Total energy = 2684.8883 kcal/mol (2682.4312 without restraints) Performing minimization step: 4555. Total energy = 2684.6118 kcal/mol (2682.1551 without restraints) Performing minimization step: 4556. Total energy = 2684.3353 kcal/mol (2681.8789 without restraints) Performing minimization step: 4557. Total energy = 2684.0587 kcal/mol (2681.6025 without restraints) Performing minimization step: 4558. Total energy = 2683.7820 kcal/mol (2681.3263 without restraints) Performing minimization step: 4559. Total energy = 2683.5055 kcal/mol (2681.0501 without restraints) Performing minimization step: 4560. Total energy = 2683.2296 kcal/mol (2680.7746 without restraints) Performing minimization step: 4561. Total energy = 2682.9533 kcal/mol (2680.4986 without restraints) Performing minimization step: 4562. Total energy = 2682.6768 kcal/mol (2680.2225 without restraints) Performing minimization step: 4563. Total energy = 2682.4006 kcal/mol (2679.9465 without restraints) Performing minimization step: 4564. Total energy = 2682.1242 kcal/mol (2679.6705 without restraints) Performing minimization step: 4565. Total energy = 2681.8478 kcal/mol (2679.3944 without restraints) Performing minimization step: 4566. Total energy = 2681.5711 kcal/mol (2679.1181 without restraints) Performing minimization step: 4567. Total energy = 2681.2949 kcal/mol (2678.8423 without restraints) Performing minimization step: 4568. Total energy = 2681.0189 kcal/mol (2678.5667 without restraints) Performing minimization step: 4569. Total energy = 2680.7428 kcal/mol (2678.2909 without restraints) Performing minimization step: 4570. Total energy = 2680.4668 kcal/mol (2678.0152 without restraints) Performing minimization step: 4571. Total energy = 2680.1911 kcal/mol (2677.7399 without restraints) Performing minimization step: 4572. Total energy = 2679.9151 kcal/mol (2677.4642 without restraints) Performing minimization step: 4573. Total energy = 2679.6391 kcal/mol (2677.1886 without restraints) Performing minimization step: 4574. Total energy = 2679.3633 kcal/mol (2676.9130 without restraints) Performing minimization step: 4575. Total energy = 2679.0879 kcal/mol (2676.6380 without restraints) Performing minimization step: 4576. Total energy = 2678.8122 kcal/mol (2676.3627 without restraints) Performing minimization step: 4577. Total energy = 2678.5366 kcal/mol (2676.0875 without restraints) Performing minimization step: 4578. Total energy = 2678.2613 kcal/mol (2675.8126 without restraints) Performing minimization step: 4579. Total energy = 2677.9856 kcal/mol (2675.5371 without restraints) Performing minimization step: 4580. Total energy = 2677.7103 kcal/mol (2675.2621 without restraints) Performing minimization step: 4581. Total energy = 2677.4358 kcal/mol (2674.9880 without restraints) Performing minimization step: 4582. Total energy = 2677.1609 kcal/mol (2674.7134 without restraints) Performing minimization step: 4583. Total energy = 2676.8860 kcal/mol (2674.4391 without restraints) Performing minimization step: 4584. Total energy = 2676.6111 kcal/mol (2674.1641 without restraints) Performing minimization step: 4585. Total energy = 2676.3367 kcal/mol (2673.8903 without restraints) Performing minimization step: 4586. Total energy = 2676.0620 kcal/mol (2673.6159 without restraints) Performing minimization step: 4587. Total energy = 2675.7874 kcal/mol (2673.3417 without restraints) Performing minimization step: 4588. Total energy = 2675.5129 kcal/mol (2673.0674 without restraints) Performing minimization step: 4589. Total energy = 2675.2384 kcal/mol (2672.7934 without restraints) Performing minimization step: 4590. Total energy = 2674.9643 kcal/mol (2672.5196 without restraints) Performing minimization step: 4591. Total energy = 2674.6902 kcal/mol (2672.2459 without restraints) Performing minimization step: 4592. Total energy = 2674.4163 kcal/mol (2671.9724 without restraints) Performing minimization step: 4593. Total energy = 2674.1426 kcal/mol (2671.6990 without restraints) Performing minimization step: 4594. Total energy = 2673.8692 kcal/mol (2671.4260 without restraints) Performing minimization step: 4595. Total energy = 2673.5958 kcal/mol (2671.1529 without restraints) Performing minimization step: 4596. Total energy = 2673.3225 kcal/mol (2670.8799 without restraints) Performing minimization step: 4597. Total energy = 2673.0493 kcal/mol (2670.6071 without restraints) Performing minimization step: 4598. Total energy = 2672.7762 kcal/mol (2670.3344 without restraints) Performing minimization step: 4599. Total energy = 2672.5038 kcal/mol (2670.0623 without restraints) Performing minimization step: 4600. Total energy = 2672.2311 kcal/mol (2669.7900 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 2671.9585 kcal/mol (2669.5178 without restraints) Performing minimization step: 4602. Total energy = 2671.6867 kcal/mol (2669.2462 without restraints) Performing minimization step: 4603. Total energy = 2671.4147 kcal/mol (2668.9744 without restraints) Performing minimization step: 4604. Total energy = 2671.1424 kcal/mol (2668.7027 without restraints) Performing minimization step: 4605. Total energy = 2670.8705 kcal/mol (2668.4311 without restraints) Performing minimization step: 4606. Total energy = 2670.5987 kcal/mol (2668.1597 without restraints) Performing minimization step: 4607. Total energy = 2670.3271 kcal/mol (2667.8884 without restraints) Performing minimization step: 4608. Total energy = 2670.0561 kcal/mol (2667.6178 without restraints) Performing minimization step: 4609. Total energy = 2669.7844 kcal/mol (2667.3465 without restraints) Performing minimization step: 4610. Total energy = 2669.5133 kcal/mol (2667.0757 without restraints) Performing minimization step: 4611. Total energy = 2669.2425 kcal/mol (2666.8052 without restraints) Performing minimization step: 4612. Total energy = 2668.9719 kcal/mol (2666.5350 without restraints) Performing minimization step: 4613. Total energy = 2668.7015 kcal/mol (2666.2649 without restraints) Performing minimization step: 4614. Total energy = 2668.4310 kcal/mol (2665.9948 without restraints) Performing minimization step: 4615. Total energy = 2668.1609 kcal/mol (2665.7251 without restraints) Performing minimization step: 4616. Total energy = 2667.8907 kcal/mol (2665.4553 without restraints) Performing minimization step: 4617. Total energy = 2667.6206 kcal/mol (2665.1854 without restraints) Performing minimization step: 4618. Total energy = 2667.3504 kcal/mol (2664.9156 without restraints) Performing minimization step: 4619. Total energy = 2667.0814 kcal/mol (2664.6473 without restraints) Performing minimization step: 4620. Total energy = 2666.8124 kcal/mol (2664.3782 without restraints) Performing minimization step: 4621. Total energy = 2666.5433 kcal/mol (2664.1095 without restraints) Performing minimization step: 4622. Total energy = 2666.2739 kcal/mol (2663.8404 without restraints) Performing minimization step: 4623. Total energy = 2666.0046 kcal/mol (2663.5715 without restraints) Performing minimization step: 4624. Total energy = 2665.7358 kcal/mol (2663.3031 without restraints) Performing minimization step: 4625. Total energy = 2665.4672 kcal/mol (2663.0348 without restraints) Performing minimization step: 4626. Total energy = 2665.1983 kcal/mol (2662.7663 without restraints) Performing minimization step: 4627. Total energy = 2664.9298 kcal/mol (2662.4982 without restraints) Performing minimization step: 4628. Total energy = 2664.6616 kcal/mol (2662.2303 without restraints) Performing minimization step: 4629. Total energy = 2664.3936 kcal/mol (2661.9627 without restraints) Performing minimization step: 4630. Total energy = 2664.1255 kcal/mol (2661.6948 without restraints) Performing minimization step: 4631. Total energy = 2663.8576 kcal/mol (2661.4273 without restraints) Performing minimization step: 4632. Total energy = 2663.5901 kcal/mol (2661.1602 without restraints) Performing minimization step: 4633. Total energy = 2663.3224 kcal/mol (2660.8928 without restraints) Performing minimization step: 4634. Total energy = 2663.0546 kcal/mol (2660.6254 without restraints) Performing minimization step: 4635. Total energy = 2662.7872 kcal/mol (2660.3583 without restraints) Performing minimization step: 4636. Total energy = 2662.5199 kcal/mol (2660.0914 without restraints) Performing minimization step: 4637. Total energy = 2662.2527 kcal/mol (2659.8245 without restraints) Performing minimization step: 4638. Total energy = 2661.9853 kcal/mol (2659.5575 without restraints) Performing minimization step: 4639. Total energy = 2661.7191 kcal/mol (2659.2916 without restraints) Performing minimization step: 4640. Total energy = 2661.4523 kcal/mol (2659.0251 without restraints) Performing minimization step: 4641. Total energy = 2661.1855 kcal/mol (2658.7588 without restraints) Performing minimization step: 4642. Total energy = 2660.9190 kcal/mol (2658.4925 without restraints) Performing minimization step: 4643. Total energy = 2660.6529 kcal/mol (2658.2268 without restraints) Performing minimization step: 4644. Total energy = 2660.3865 kcal/mol (2657.9607 without restraints) Performing minimization step: 4645. Total energy = 2660.1204 kcal/mol (2657.6949 without restraints) Performing minimization step: 4646. Total energy = 2659.8542 kcal/mol (2657.4291 without restraints) Performing minimization step: 4647. Total energy = 2659.5882 kcal/mol (2657.1635 without restraints) Performing minimization step: 4648. Total energy = 2659.3222 kcal/mol (2656.8977 without restraints) Performing minimization step: 4649. Total energy = 2659.0561 kcal/mol (2656.6321 without restraints) Performing minimization step: 4650. Total energy = 2658.7903 kcal/mol (2656.3665 without restraints) Performing minimization step: 4651. Total energy = 2658.5245 kcal/mol (2656.1011 without restraints) Performing minimization step: 4652. Total energy = 2658.2587 kcal/mol (2655.8355 without restraints) Performing minimization step: 4653. Total energy = 2657.9928 kcal/mol (2655.5700 without restraints) Performing minimization step: 4654. Total energy = 2657.7273 kcal/mol (2655.3050 without restraints) Performing minimization step: 4655. Total energy = 2657.4619 kcal/mol (2655.0398 without restraints) Performing minimization step: 4656. Total energy = 2657.1965 kcal/mol (2654.7748 without restraints) Performing minimization step: 4657. Total energy = 2656.9311 kcal/mol (2654.5097 without restraints) Performing minimization step: 4658. Total energy = 2656.6659 kcal/mol (2654.2448 without restraints) Performing minimization step: 4659. Total energy = 2656.4010 kcal/mol (2653.9803 without restraints) Performing minimization step: 4660. Total energy = 2656.1360 kcal/mol (2653.7156 without restraints) Performing minimization step: 4661. Total energy = 2655.8709 kcal/mol (2653.4508 without restraints) Performing minimization step: 4662. Total energy = 2655.6057 kcal/mol (2653.1860 without restraints) Performing minimization step: 4663. Total energy = 2655.3408 kcal/mol (2652.9215 without restraints) Performing minimization step: 4664. Total energy = 2655.0761 kcal/mol (2652.6570 without restraints) Performing minimization step: 4665. Total energy = 2654.8110 kcal/mol (2652.3924 without restraints) Performing minimization step: 4666. Total energy = 2654.5460 kcal/mol (2652.1277 without restraints) Performing minimization step: 4667. Total energy = 2654.2813 kcal/mol (2651.8632 without restraints) Performing minimization step: 4668. Total energy = 2654.0164 kcal/mol (2651.5986 without restraints) Performing minimization step: 4669. Total energy = 2653.7517 kcal/mol (2651.3343 without restraints) Performing minimization step: 4670. Total energy = 2653.4869 kcal/mol (2651.0697 without restraints) Performing minimization step: 4671. Total energy = 2653.2218 kcal/mol (2650.8051 without restraints) Performing minimization step: 4672. Total energy = 2652.9571 kcal/mol (2650.5407 without restraints) Performing minimization step: 4673. Total energy = 2652.6920 kcal/mol (2650.2759 without restraints) Performing minimization step: 4674. Total energy = 2652.4270 kcal/mol (2650.0111 without restraints) Performing minimization step: 4675. Total energy = 2652.1622 kcal/mol (2649.7469 without restraints) Performing minimization step: 4676. Total energy = 2651.8977 kcal/mol (2649.4825 without restraints) Performing minimization step: 4677. Total energy = 2651.6327 kcal/mol (2649.2179 without restraints) Performing minimization step: 4678. Total energy = 2651.3676 kcal/mol (2648.9531 without restraints) Performing minimization step: 4679. Total energy = 2651.1028 kcal/mol (2648.6887 without restraints) Performing minimization step: 4680. Total energy = 2650.8376 kcal/mol (2648.4238 without restraints) Performing minimization step: 4681. Total energy = 2650.5725 kcal/mol (2648.1590 without restraints) Performing minimization step: 4682. Total energy = 2650.3075 kcal/mol (2647.8943 without restraints) Performing minimization step: 4683. Total energy = 2650.0424 kcal/mol (2647.6294 without restraints) Performing minimization step: 4684. Total energy = 2649.7772 kcal/mol (2647.3646 without restraints) Performing minimization step: 4685. Total energy = 2649.5117 kcal/mol (2647.0994 without restraints) Performing minimization step: 4686. Total energy = 2649.2465 kcal/mol (2646.8347 without restraints) Performing minimization step: 4687. Total energy = 2648.9815 kcal/mol (2646.5698 without restraints) Performing minimization step: 4688. Total energy = 2648.7160 kcal/mol (2646.3047 without restraints) Performing minimization step: 4689. Total energy = 2648.4506 kcal/mol (2646.0395 without restraints) Performing minimization step: 4690. Total energy = 2648.1850 kcal/mol (2645.7743 without restraints) Performing minimization step: 4691. Total energy = 2647.9195 kcal/mol (2645.5093 without restraints) Performing minimization step: 4692. Total energy = 2647.6541 kcal/mol (2645.2440 without restraints) Performing minimization step: 4693. Total energy = 2647.3882 kcal/mol (2644.9785 without restraints) Performing minimization step: 4694. Total energy = 2647.1222 kcal/mol (2644.7127 without restraints) Performing minimization step: 4695. Total energy = 2646.8563 kcal/mol (2644.4471 without restraints) Performing minimization step: 4696. Total energy = 2646.5900 kcal/mol (2644.1812 without restraints) Performing minimization step: 4697. Total energy = 2646.3241 kcal/mol (2643.9156 without restraints) Performing minimization step: 4698. Total energy = 2646.0581 kcal/mol (2643.6499 without restraints) Performing minimization step: 4699. Total energy = 2645.7917 kcal/mol (2643.3837 without restraints) Performing minimization step: 4700. Total energy = 2645.5253 kcal/mol (2643.1177 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 2645.2588 kcal/mol (2642.8515 without restraints) Performing minimization step: 4702. Total energy = 2644.9918 kcal/mol (2642.5849 without restraints) Performing minimization step: 4703. Total energy = 2644.7252 kcal/mol (2642.3185 without restraints) Performing minimization step: 4704. Total energy = 2644.4586 kcal/mol (2642.0522 without restraints) Performing minimization step: 4705. Total energy = 2644.1917 kcal/mol (2641.7856 without restraints) Performing minimization step: 4706. Total energy = 2643.9245 kcal/mol (2641.5188 without restraints) Performing minimization step: 4707. Total energy = 2643.6575 kcal/mol (2641.2520 without restraints) Performing minimization step: 4708. Total energy = 2643.3896 kcal/mol (2640.9844 without restraints) Performing minimization step: 4709. Total energy = 2643.1227 kcal/mol (2640.7179 without restraints) Performing minimization step: 4710. Total energy = 2642.8553 kcal/mol (2640.4508 without restraints) Performing minimization step: 4711. Total energy = 2642.5878 kcal/mol (2640.1835 without restraints) Performing minimization step: 4712. Total energy = 2642.3201 kcal/mol (2639.9162 without restraints) Performing minimization step: 4713. Total energy = 2642.0521 kcal/mol (2639.6485 without restraints) Performing minimization step: 4714. Total energy = 2641.7840 kcal/mol (2639.3807 without restraints) Performing minimization step: 4715. Total energy = 2641.5162 kcal/mol (2639.1131 without restraints) Performing minimization step: 4716. Total energy = 2641.2479 kcal/mol (2638.8451 without restraints) Performing minimization step: 4717. Total energy = 2640.9796 kcal/mol (2638.5771 without restraints) Performing minimization step: 4718. Total energy = 2640.7110 kcal/mol (2638.3088 without restraints) Performing minimization step: 4719. Total energy = 2640.4423 kcal/mol (2638.0404 without restraints) Performing minimization step: 4720. Total energy = 2640.1734 kcal/mol (2637.7719 without restraints) Performing minimization step: 4721. Total energy = 2639.9047 kcal/mol (2637.5034 without restraints) Performing minimization step: 4722. Total energy = 2639.6356 kcal/mol (2637.2347 without restraints) Performing minimization step: 4723. Total energy = 2639.3665 kcal/mol (2636.9658 without restraints) Performing minimization step: 4724. Total energy = 2639.0974 kcal/mol (2636.6970 without restraints) Performing minimization step: 4725. Total energy = 2638.8280 kcal/mol (2636.4278 without restraints) Performing minimization step: 4726. Total energy = 2638.5585 kcal/mol (2636.1587 without restraints) Performing minimization step: 4727. Total energy = 2638.2890 kcal/mol (2635.8895 without restraints) Performing minimization step: 4728. Total energy = 2638.0196 kcal/mol (2635.6204 without restraints) Performing minimization step: 4729. Total energy = 2637.7500 kcal/mol (2635.3511 without restraints) Performing minimization step: 4730. Total energy = 2637.4802 kcal/mol (2635.0815 without restraints) Performing minimization step: 4731. Total energy = 2637.2102 kcal/mol (2634.8119 without restraints) Performing minimization step: 4732. Total energy = 2636.9401 kcal/mol (2634.5421 without restraints) Performing minimization step: 4733. Total energy = 2636.6699 kcal/mol (2634.2722 without restraints) Performing minimization step: 4734. Total energy = 2636.3996 kcal/mol (2634.0022 without restraints) Performing minimization step: 4735. Total energy = 2636.1291 kcal/mol (2633.7319 without restraints) Performing minimization step: 4736. Total energy = 2635.8587 kcal/mol (2633.4619 without restraints) Performing minimization step: 4737. Total energy = 2635.5881 kcal/mol (2633.1915 without restraints) Performing minimization step: 4738. Total energy = 2635.3176 kcal/mol (2632.9213 without restraints) Performing minimization step: 4739. Total energy = 2635.0470 kcal/mol (2632.6510 without restraints) Performing minimization step: 4740. Total energy = 2634.7761 kcal/mol (2632.3806 without restraints) Performing minimization step: 4741. Total energy = 2634.5055 kcal/mol (2632.1101 without restraints) Performing minimization step: 4742. Total energy = 2634.2342 kcal/mol (2631.8390 without restraints) Performing minimization step: 4743. Total energy = 2633.9630 kcal/mol (2631.5682 without restraints) Performing minimization step: 4744. Total energy = 2633.6918 kcal/mol (2631.2974 without restraints) Performing minimization step: 4745. Total energy = 2633.4207 kcal/mol (2631.0265 without restraints) Performing minimization step: 4746. Total energy = 2633.1490 kcal/mol (2630.7551 without restraints) Performing minimization step: 4747. Total energy = 2632.8774 kcal/mol (2630.4838 without restraints) Performing minimization step: 4748. Total energy = 2632.6056 kcal/mol (2630.2123 without restraints) Performing minimization step: 4749. Total energy = 2632.3340 kcal/mol (2629.9410 without restraints) Performing minimization step: 4750. Total energy = 2632.0625 kcal/mol (2629.6698 without restraints) Performing minimization step: 4751. Total energy = 2631.7905 kcal/mol (2629.3981 without restraints) Performing minimization step: 4752. Total energy = 2631.5183 kcal/mol (2629.1262 without restraints) Performing minimization step: 4753. Total energy = 2631.2463 kcal/mol (2628.8544 without restraints) Performing minimization step: 4754. Total energy = 2630.9741 kcal/mol (2628.5825 without restraints) Performing minimization step: 4755. Total energy = 2630.7022 kcal/mol (2628.3110 without restraints) Performing minimization step: 4756. Total energy = 2630.4301 kcal/mol (2628.0391 without restraints) Performing minimization step: 4757. Total energy = 2630.1578 kcal/mol (2627.7671 without restraints) Performing minimization step: 4758. Total energy = 2629.8858 kcal/mol (2627.4956 without restraints) Performing minimization step: 4759. Total energy = 2629.6131 kcal/mol (2627.2230 without restraints) Performing minimization step: 4760. Total energy = 2629.3407 kcal/mol (2626.9509 without restraints) Performing minimization step: 4761. Total energy = 2629.0682 kcal/mol (2626.6788 without restraints) Performing minimization step: 4762. Total energy = 2628.7956 kcal/mol (2626.4066 without restraints) Performing minimization step: 4763. Total energy = 2628.5229 kcal/mol (2626.1341 without restraints) Performing minimization step: 4764. Total energy = 2628.2504 kcal/mol (2625.8619 without restraints) Performing minimization step: 4765. Total energy = 2627.9779 kcal/mol (2625.5896 without restraints) Performing minimization step: 4766. Total energy = 2627.7053 kcal/mol (2625.3174 without restraints) Performing minimization step: 4767. Total energy = 2627.4330 kcal/mol (2625.0454 without restraints) Performing minimization step: 4768. Total energy = 2627.1608 kcal/mol (2624.7735 without restraints) Performing minimization step: 4769. Total energy = 2626.8882 kcal/mol (2624.5011 without restraints) Performing minimization step: 4770. Total energy = 2626.6154 kcal/mol (2624.2286 without restraints) Performing minimization step: 4771. Total energy = 2626.3426 kcal/mol (2623.9562 without restraints) Performing minimization step: 4772. Total energy = 2626.0699 kcal/mol (2623.6838 without restraints) Performing minimization step: 4773. Total energy = 2625.7975 kcal/mol (2623.4117 without restraints) Performing minimization step: 4774. Total energy = 2625.5253 kcal/mol (2623.1400 without restraints) Performing minimization step: 4775. Total energy = 2625.2533 kcal/mol (2622.8681 without restraints) Performing minimization step: 4776. Total energy = 2624.9812 kcal/mol (2622.5962 without restraints) Performing minimization step: 4777. Total energy = 2624.7086 kcal/mol (2622.3240 without restraints) Performing minimization step: 4778. Total energy = 2624.4362 kcal/mol (2622.0517 without restraints) Performing minimization step: 4779. Total energy = 2624.1637 kcal/mol (2621.7798 without restraints) Performing minimization step: 4780. Total energy = 2623.8916 kcal/mol (2621.5080 without restraints) Performing minimization step: 4781. Total energy = 2623.6194 kcal/mol (2621.2362 without restraints) Performing minimization step: 4782. Total energy = 2623.3477 kcal/mol (2620.9646 without restraints) Performing minimization step: 4783. Total energy = 2623.0757 kcal/mol (2620.6930 without restraints) Performing minimization step: 4784. Total energy = 2622.8037 kcal/mol (2620.4213 without restraints) Performing minimization step: 4785. Total energy = 2622.5324 kcal/mol (2620.1503 without restraints) Performing minimization step: 4786. Total energy = 2622.2605 kcal/mol (2619.8786 without restraints) Performing minimization step: 4787. Total energy = 2621.9889 kcal/mol (2619.6074 without restraints) Performing minimization step: 4788. Total energy = 2621.7178 kcal/mol (2619.3366 without restraints) Performing minimization step: 4789. Total energy = 2621.4466 kcal/mol (2619.0658 without restraints) Performing minimization step: 4790. Total energy = 2621.1757 kcal/mol (2618.7952 without restraints) Performing minimization step: 4791. Total energy = 2620.9046 kcal/mol (2618.5243 without restraints) Performing minimization step: 4792. Total energy = 2620.6335 kcal/mol (2618.2537 without restraints) Performing minimization step: 4793. Total energy = 2620.3629 kcal/mol (2617.9834 without restraints) Performing minimization step: 4794. Total energy = 2620.0922 kcal/mol (2617.7130 without restraints) Performing minimization step: 4795. Total energy = 2619.8218 kcal/mol (2617.4429 without restraints) Performing minimization step: 4796. Total energy = 2619.5513 kcal/mol (2617.1728 without restraints) Performing minimization step: 4797. Total energy = 2619.2811 kcal/mol (2616.9029 without restraints) Performing minimization step: 4798. Total energy = 2619.0112 kcal/mol (2616.6333 without restraints) Performing minimization step: 4799. Total energy = 2618.7415 kcal/mol (2616.3639 without restraints) Performing minimization step: 4800. Total energy = 2618.4720 kcal/mol (2616.0947 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 2618.2026 kcal/mol (2615.8256 without restraints) Performing minimization step: 4802. Total energy = 2617.9337 kcal/mol (2615.5571 without restraints) Performing minimization step: 4803. Total energy = 2617.6647 kcal/mol (2615.2883 without restraints) Performing minimization step: 4804. Total energy = 2617.3958 kcal/mol (2615.0199 without restraints) Performing minimization step: 4805. Total energy = 2617.1276 kcal/mol (2614.7520 without restraints) Performing minimization step: 4806. Total energy = 2616.8594 kcal/mol (2614.4841 without restraints) Performing minimization step: 4807. Total energy = 2616.5913 kcal/mol (2614.2164 without restraints) Performing minimization step: 4808. Total energy = 2616.3235 kcal/mol (2613.9489 without restraints) Performing minimization step: 4809. Total energy = 2616.0562 kcal/mol (2613.6820 without restraints) Performing minimization step: 4810. Total energy = 2615.7887 kcal/mol (2613.4148 without restraints) Performing minimization step: 4811. Total energy = 2615.5219 kcal/mol (2613.1483 without restraints) Performing minimization step: 4812. Total energy = 2615.2551 kcal/mol (2612.8818 without restraints) Performing minimization step: 4813. Total energy = 2614.9888 kcal/mol (2612.6158 without restraints) Performing minimization step: 4814. Total energy = 2614.7223 kcal/mol (2612.3499 without restraints) Performing minimization step: 4815. Total energy = 2614.4563 kcal/mol (2612.0841 without restraints) Performing minimization step: 4816. Total energy = 2614.1907 kcal/mol (2611.8188 without restraints) Performing minimization step: 4817. Total energy = 2613.9257 kcal/mol (2611.5541 without restraints) Performing minimization step: 4818. Total energy = 2613.6606 kcal/mol (2611.2894 without restraints) Performing minimization step: 4819. Total energy = 2613.3957 kcal/mol (2611.0247 without restraints) Performing minimization step: 4820. Total energy = 2613.1311 kcal/mol (2610.7606 without restraints) Performing minimization step: 4821. Total energy = 2612.8670 kcal/mol (2610.4968 without restraints) Performing minimization step: 4822. Total energy = 2612.6035 kcal/mol (2610.2338 without restraints) Performing minimization step: 4823. Total energy = 2612.3403 kcal/mol (2609.9709 without restraints) Performing minimization step: 4824. Total energy = 2612.0773 kcal/mol (2609.7083 without restraints) Performing minimization step: 4825. Total energy = 2611.8146 kcal/mol (2609.4459 without restraints) Performing minimization step: 4826. Total energy = 2611.5526 kcal/mol (2609.1842 without restraints) Performing minimization step: 4827. Total energy = 2611.2905 kcal/mol (2608.9225 without restraints) Performing minimization step: 4828. Total energy = 2611.0289 kcal/mol (2608.6613 without restraints) Performing minimization step: 4829. Total energy = 2610.7675 kcal/mol (2608.4002 without restraints) Performing minimization step: 4830. Total energy = 2610.5067 kcal/mol (2608.1397 without restraints) Performing minimization step: 4831. Total energy = 2610.2460 kcal/mol (2607.8794 without restraints) Performing minimization step: 4832. Total energy = 2609.9858 kcal/mol (2607.6195 without restraints) Performing minimization step: 4833. Total energy = 2609.7256 kcal/mol (2607.3597 without restraints) Performing minimization step: 4834. Total energy = 2609.4663 kcal/mol (2607.1008 without restraints) Performing minimization step: 4835. Total energy = 2609.2073 kcal/mol (2606.8420 without restraints) Performing minimization step: 4836. Total energy = 2608.9484 kcal/mol (2606.5836 without restraints) Performing minimization step: 4837. Total energy = 2608.6901 kcal/mol (2606.3257 without restraints) Performing minimization step: 4838. Total energy = 2608.4318 kcal/mol (2606.0676 without restraints) Performing minimization step: 4839. Total energy = 2608.1740 kcal/mol (2605.8103 without restraints) Performing minimization step: 4840. Total energy = 2607.9169 kcal/mol (2605.5535 without restraints) Performing minimization step: 4841. Total energy = 2607.6600 kcal/mol (2605.2970 without restraints) Performing minimization step: 4842. Total energy = 2607.4037 kcal/mol (2605.0411 without restraints) Performing minimization step: 4843. Total energy = 2607.1473 kcal/mol (2604.7851 without restraints) Performing minimization step: 4844. Total energy = 2606.8919 kcal/mol (2604.5300 without restraints) Performing minimization step: 4845. Total energy = 2606.6366 kcal/mol (2604.2751 without restraints) Performing minimization step: 4846. Total energy = 2606.3821 kcal/mol (2604.0210 without restraints) Performing minimization step: 4847. Total energy = 2606.1278 kcal/mol (2603.7670 without restraints) Performing minimization step: 4848. Total energy = 2605.8742 kcal/mol (2603.5140 without restraints) Performing minimization step: 4849. Total energy = 2605.6209 kcal/mol (2603.2609 without restraints) Performing minimization step: 4850. Total energy = 2605.3682 kcal/mol (2603.0086 without restraints) Performing minimization step: 4851. Total energy = 2605.1159 kcal/mol (2602.7567 without restraints) Performing minimization step: 4852. Total energy = 2604.8643 kcal/mol (2602.5054 without restraints) Performing minimization step: 4853. Total energy = 2604.6131 kcal/mol (2602.2546 without restraints) Performing minimization step: 4854. Total energy = 2604.3619 kcal/mol (2602.0039 without restraints) Performing minimization step: 4855. Total energy = 2604.1116 kcal/mol (2601.7540 without restraints) Performing minimization step: 4856. Total energy = 2603.8620 kcal/mol (2601.5047 without restraints) Performing minimization step: 4857. Total energy = 2603.6125 kcal/mol (2601.2555 without restraints) Performing minimization step: 4858. Total energy = 2603.3634 kcal/mol (2601.0068 without restraints) Performing minimization step: 4859. Total energy = 2603.1148 kcal/mol (2600.7586 without restraints) Performing minimization step: 4860. Total energy = 2602.8670 kcal/mol (2600.5112 without restraints) Performing minimization step: 4861. Total energy = 2602.6191 kcal/mol (2600.2637 without restraints) Performing minimization step: 4862. Total energy = 2602.3720 kcal/mol (2600.0170 without restraints) Performing minimization step: 4863. Total energy = 2602.1251 kcal/mol (2599.7705 without restraints) Performing minimization step: 4864. Total energy = 2601.8797 kcal/mol (2599.5256 without restraints) Performing minimization step: 4865. Total energy = 2601.6339 kcal/mol (2599.2801 without restraints) Performing minimization step: 4866. Total energy = 2601.3891 kcal/mol (2599.0358 without restraints) Performing minimization step: 4867. Total energy = 2601.1446 kcal/mol (2598.7917 without restraints) Performing minimization step: 4868. Total energy = 2600.9005 kcal/mol (2598.5479 without restraints) Performing minimization step: 4869. Total energy = 2600.6570 kcal/mol (2598.3048 without restraints) Performing minimization step: 4870. Total energy = 2600.4142 kcal/mol (2598.0623 without restraints) Performing minimization step: 4871. Total energy = 2600.1715 kcal/mol (2597.8201 without restraints) Performing minimization step: 4872. Total energy = 2599.9293 kcal/mol (2597.5783 without restraints) Performing minimization step: 4873. Total energy = 2599.6876 kcal/mol (2597.3370 without restraints) Performing minimization step: 4874. Total energy = 2599.4465 kcal/mol (2597.0962 without restraints) Performing minimization step: 4875. Total energy = 2599.2055 kcal/mol (2596.8556 without restraints) Performing minimization step: 4876. Total energy = 2598.9657 kcal/mol (2596.6163 without restraints) Performing minimization step: 4877. Total energy = 2598.7259 kcal/mol (2596.3769 without restraints) Performing minimization step: 4878. Total energy = 2598.4868 kcal/mol (2596.1382 without restraints) Performing minimization step: 4879. Total energy = 2598.2483 kcal/mol (2595.9001 without restraints) Performing minimization step: 4880. Total energy = 2598.0101 kcal/mol (2595.6622 without restraints) Performing minimization step: 4881. Total energy = 2597.7728 kcal/mol (2595.4253 without restraints) Performing minimization step: 4882. Total energy = 2597.5356 kcal/mol (2595.1887 without restraints) Performing minimization step: 4883. Total energy = 2597.2993 kcal/mol (2594.9527 without restraints) Performing minimization step: 4884. Total energy = 2597.0633 kcal/mol (2594.7171 without restraints) Performing minimization step: 4885. Total energy = 2596.8276 kcal/mol (2594.4818 without restraints) Performing minimization step: 4886. Total energy = 2596.5922 kcal/mol (2594.2468 without restraints) Performing minimization step: 4887. Total energy = 2596.3577 kcal/mol (2594.0127 without restraints) Performing minimization step: 4888. Total energy = 2596.1235 kcal/mol (2593.7788 without restraints) Performing minimization step: 4889. Total energy = 2595.8899 kcal/mol (2593.5458 without restraints) Performing minimization step: 4890. Total energy = 2595.6567 kcal/mol (2593.3129 without restraints) Performing minimization step: 4891. Total energy = 2595.4242 kcal/mol (2593.0808 without restraints) Performing minimization step: 4892. Total energy = 2595.1922 kcal/mol (2592.8493 without restraints) Performing minimization step: 4893. Total energy = 2594.9611 kcal/mol (2592.6186 without restraints) Performing minimization step: 4894. Total energy = 2594.7301 kcal/mol (2592.3880 without restraints) Performing minimization step: 4895. Total energy = 2594.4998 kcal/mol (2592.1582 without restraints) Performing minimization step: 4896. Total energy = 2594.2702 kcal/mol (2591.9290 without restraints) Performing minimization step: 4897. Total energy = 2594.0407 kcal/mol (2591.6999 without restraints) Performing minimization step: 4898. Total energy = 2593.8116 kcal/mol (2591.4712 without restraints) Performing minimization step: 4899. Total energy = 2593.5833 kcal/mol (2591.2434 without restraints) Performing minimization step: 4900. Total energy = 2593.3550 kcal/mol (2591.0155 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 2593.1276 kcal/mol (2590.7884 without restraints) Performing minimization step: 4902. Total energy = 2592.9006 kcal/mol (2590.5619 without restraints) Performing minimization step: 4903. Total energy = 2592.6740 kcal/mol (2590.3358 without restraints) Performing minimization step: 4904. Total energy = 2592.4478 kcal/mol (2590.1100 without restraints) Performing minimization step: 4905. Total energy = 2592.2225 kcal/mol (2589.8850 without restraints) Performing minimization step: 4906. Total energy = 2591.9974 kcal/mol (2589.6604 without restraints) Performing minimization step: 4907. Total energy = 2591.7724 kcal/mol (2589.4358 without restraints) Performing minimization step: 4908. Total energy = 2591.5483 kcal/mol (2589.2121 without restraints) Performing minimization step: 4909. Total energy = 2591.3245 kcal/mol (2588.9889 without restraints) Performing minimization step: 4910. Total energy = 2591.1013 kcal/mol (2588.7659 without restraints) Performing minimization step: 4911. Total energy = 2590.8784 kcal/mol (2588.5435 without restraints) Performing minimization step: 4912. Total energy = 2590.6563 kcal/mol (2588.3216 without restraints) Performing minimization step: 4913. Total energy = 2590.4348 kcal/mol (2588.1007 without restraints) Performing minimization step: 4914. Total energy = 2590.2135 kcal/mol (2587.8799 without restraints) Performing minimization step: 4915. Total energy = 2589.9925 kcal/mol (2587.6592 without restraints) Performing minimization step: 4916. Total energy = 2589.7721 kcal/mol (2587.4394 without restraints) Performing minimization step: 4917. Total energy = 2589.5523 kcal/mol (2587.2200 without restraints) Performing minimization step: 4918. Total energy = 2589.3328 kcal/mol (2587.0010 without restraints) Performing minimization step: 4919. Total energy = 2589.1138 kcal/mol (2586.7824 without restraints) Performing minimization step: 4920. Total energy = 2588.8959 kcal/mol (2586.5649 without restraints) Performing minimization step: 4921. Total energy = 2588.6778 kcal/mol (2586.3473 without restraints) Performing minimization step: 4922. Total energy = 2588.4606 kcal/mol (2586.1304 without restraints) Performing minimization step: 4923. Total energy = 2588.2437 kcal/mol (2585.9140 without restraints) Performing minimization step: 4924. Total energy = 2588.0271 kcal/mol (2585.6978 without restraints) Performing minimization step: 4925. Total energy = 2587.8107 kcal/mol (2585.4818 without restraints) Performing minimization step: 4926. Total energy = 2587.5947 kcal/mol (2585.2663 without restraints) Performing minimization step: 4927. Total energy = 2587.3791 kcal/mol (2585.0511 without restraints) Performing minimization step: 4928. Total energy = 2587.1639 kcal/mol (2584.8363 without restraints) Performing minimization step: 4929. Total energy = 2586.9489 kcal/mol (2584.6218 without restraints) Performing minimization step: 4930. Total energy = 2586.7346 kcal/mol (2584.4079 without restraints) Performing minimization step: 4931. Total energy = 2586.5206 kcal/mol (2584.1944 without restraints) Performing minimization step: 4932. Total energy = 2586.3071 kcal/mol (2583.9813 without restraints) Performing minimization step: 4933. Total energy = 2586.0941 kcal/mol (2583.7688 without restraints) Performing minimization step: 4934. Total energy = 2585.8812 kcal/mol (2583.5562 without restraints) Performing minimization step: 4935. Total energy = 2585.6688 kcal/mol (2583.3443 without restraints) Performing minimization step: 4936. Total energy = 2585.4570 kcal/mol (2583.1329 without restraints) Performing minimization step: 4937. Total energy = 2585.2453 kcal/mol (2582.9217 without restraints) Performing minimization step: 4938. Total energy = 2585.0341 kcal/mol (2582.7109 without restraints) Performing minimization step: 4939. Total energy = 2584.8235 kcal/mol (2582.5009 without restraints) Performing minimization step: 4940. Total energy = 2584.6131 kcal/mol (2582.2908 without restraints) Performing minimization step: 4941. Total energy = 2584.4033 kcal/mol (2582.0816 without restraints) Performing minimization step: 4942. Total energy = 2584.1937 kcal/mol (2581.8723 without restraints) Performing minimization step: 4943. Total energy = 2583.9843 kcal/mol (2581.6634 without restraints) Performing minimization step: 4944. Total energy = 2583.7753 kcal/mol (2581.4548 without restraints) Performing minimization step: 4945. Total energy = 2583.5669 kcal/mol (2581.2469 without restraints) Performing minimization step: 4946. Total energy = 2583.3590 kcal/mol (2581.0395 without restraints) Performing minimization step: 4947. Total energy = 2583.1513 kcal/mol (2580.8321 without restraints) Performing minimization step: 4948. Total energy = 2582.9436 kcal/mol (2580.6247 without restraints) Performing minimization step: 4949. Total energy = 2582.7359 kcal/mol (2580.4175 without restraints) Performing minimization step: 4950. Total energy = 2582.5289 kcal/mol (2580.2109 without restraints) Performing minimization step: 4951. Total energy = 2582.3219 kcal/mol (2580.0044 without restraints) Performing minimization step: 4952. Total energy = 2582.1156 kcal/mol (2579.7985 without restraints) Performing minimization step: 4953. Total energy = 2581.9094 kcal/mol (2579.5928 without restraints) Performing minimization step: 4954. Total energy = 2581.7037 kcal/mol (2579.3875 without restraints) Performing minimization step: 4955. Total energy = 2581.4981 kcal/mol (2579.1824 without restraints) Performing minimization step: 4956. Total energy = 2581.2932 kcal/mol (2578.9779 without restraints) Performing minimization step: 4957. Total energy = 2581.0881 kcal/mol (2578.7734 without restraints) Performing minimization step: 4958. Total energy = 2580.8839 kcal/mol (2578.5696 without restraints) Performing minimization step: 4959. Total energy = 2580.6797 kcal/mol (2578.3658 without restraints) Performing minimization step: 4960. Total energy = 2580.4758 kcal/mol (2578.1624 without restraints) Performing minimization step: 4961. Total energy = 2580.2723 kcal/mol (2577.9593 without restraints) Performing minimization step: 4962. Total energy = 2580.0688 kcal/mol (2577.7562 without restraints) Performing minimization step: 4963. Total energy = 2579.8660 kcal/mol (2577.5539 without restraints) Performing minimization step: 4964. Total energy = 2579.6633 kcal/mol (2577.3516 without restraints) Performing minimization step: 4965. Total energy = 2579.4608 kcal/mol (2577.1496 without restraints) Performing minimization step: 4966. Total energy = 2579.2586 kcal/mol (2576.9478 without restraints) Performing minimization step: 4967. Total energy = 2579.0567 kcal/mol (2576.7463 without restraints) Performing minimization step: 4968. Total energy = 2578.8550 kcal/mol (2576.5451 without restraints) Performing minimization step: 4969. Total energy = 2578.6539 kcal/mol (2576.3445 without restraints) Performing minimization step: 4970. Total energy = 2578.4532 kcal/mol (2576.1444 without restraints) Performing minimization step: 4971. Total energy = 2578.2525 kcal/mol (2575.9439 without restraints) Performing minimization step: 4972. Total energy = 2578.0523 kcal/mol (2575.7442 without restraints) Performing minimization step: 4973. Total energy = 2577.8521 kcal/mol (2575.5444 without restraints) Performing minimization step: 4974. Total energy = 2577.6519 kcal/mol (2575.3447 without restraints) Performing minimization step: 4975. Total energy = 2577.4520 kcal/mol (2575.1452 without restraints) Performing minimization step: 4976. Total energy = 2577.2528 kcal/mol (2574.9464 without restraints) Performing minimization step: 4977. Total energy = 2577.0535 kcal/mol (2574.7476 without restraints) Performing minimization step: 4978. Total energy = 2576.8543 kcal/mol (2574.5489 without restraints) Performing minimization step: 4979. Total energy = 2576.6554 kcal/mol (2574.3504 without restraints) Performing minimization step: 4980. Total energy = 2576.4566 kcal/mol (2574.1521 without restraints) Performing minimization step: 4981. Total energy = 2576.2580 kcal/mol (2573.9539 without restraints) Performing minimization step: 4982. Total energy = 2576.0595 kcal/mol (2573.7560 without restraints) Performing minimization step: 4983. Total energy = 2575.8617 kcal/mol (2573.5586 without restraints) Performing minimization step: 4984. Total energy = 2575.6640 kcal/mol (2573.3613 without restraints) Performing minimization step: 4985. Total energy = 2575.4666 kcal/mol (2573.1644 without restraints) Performing minimization step: 4986. Total energy = 2575.2693 kcal/mol (2572.9674 without restraints) Performing minimization step: 4987. Total energy = 2575.0720 kcal/mol (2572.7706 without restraints) Performing minimization step: 4988. Total energy = 2574.8750 kcal/mol (2572.5741 without restraints) Performing minimization step: 4989. Total energy = 2574.6786 kcal/mol (2572.3781 without restraints) Performing minimization step: 4990. Total energy = 2574.4822 kcal/mol (2572.1822 without restraints) Performing minimization step: 4991. Total energy = 2574.2858 kcal/mol (2571.9862 without restraints) Performing minimization step: 4992. Total energy = 2574.0896 kcal/mol (2571.7905 without restraints) Performing minimization step: 4993. Total energy = 2573.8940 kcal/mol (2571.5953 without restraints) Performing minimization step: 4994. Total energy = 2573.6981 kcal/mol (2571.3998 without restraints) Performing minimization step: 4995. Total energy = 2573.5028 kcal/mol (2571.2050 without restraints) Performing minimization step: 4996. Total energy = 2573.3073 kcal/mol (2571.0100 without restraints) Performing minimization step: 4997. Total energy = 2573.1120 kcal/mol (2570.8151 without restraints) Performing minimization step: 4998. Total energy = 2572.9168 kcal/mol (2570.6203 without restraints) Performing minimization step: 4999. Total energy = 2572.7220 kcal/mol (2570.4260 without restraints) Performing minimization step: 5000. Total energy = 2572.5271 kcal/mol (2570.2315 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/5a8d4633/tmp/env8_A20_flipped_out_refx/env8_A20_flipped_out_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to env8_A20_flipped_out_refx.pdb DONE!