============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a.pdb ============================================================================= Atom's 1829 C6 residue renamed to RC3 Atom's 1828 C5 residue renamed to RC3 Atom's 1827 N4 residue renamed to RC3 Atom's 1826 C4 residue renamed to RC3 Atom's 1825 N3 residue renamed to RC3 Atom's 1824 O2 residue renamed to RC3 Atom's 1823 C2 residue renamed to RC3 Atom's 1822 N1 residue renamed to RC3 Atom's 1821 C1' residue renamed to RC3 Atom's 1820 O2' residue renamed to RC3 Atom's 1819 C2' residue renamed to RC3 Atom's 1818 O3' residue renamed to RC3 Atom's 1817 C3' residue renamed to RC3 Atom's 1816 O4' residue renamed to RC3 Atom's 1815 C4' residue renamed to RC3 Atom's 1814 C5' residue renamed to RC3 Atom's 1813 O5' residue renamed to RC3 Atom's 1812 OP2 residue renamed to RC3 Atom's 1811 OP1 residue renamed to RC3 Atom's 1810 P residue renamed to RC3 Error: recognition of atom ATOM 1 OP3 G A 1 ... failed. Atom erased. Missing atom added: ATOM 24 H5'1 G A 1 39.739 -30.334 23.125 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 1 38.452 -30.129 24.441 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 1 38.498 -31.993 24.706 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 1 38.309 -29.735 26.609 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 1 40.162 -32.718 27.785 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 1 38.005 -31.272 28.390 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 1 37.353 -32.960 26.534 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 1 41.189 -29.486 26.338 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 1 42.250 -29.523 33.118 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 1 40.095 -32.378 32.552 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 1 40.627 -31.149 33.554 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 2 35.341 -32.384 28.072 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 2 34.018 -31.233 28.673 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 2 34.448 -32.306 30.417 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 2 34.777 -29.290 30.286 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 2 37.005 -31.266 32.566 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 2 35.099 -29.328 32.677 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 2 33.838 -31.591 32.588 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 2 36.854 -29.521 29.458 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 2 39.647 -25.728 29.896 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 2 40.079 -25.780 31.552 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 2 38.153 -27.345 28.499 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 3 32.788 -29.812 33.537 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 3 31.304 -28.713 33.705 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 3 32.626 -28.697 35.594 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 3 32.638 -26.081 34.080 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 3 35.720 -27.319 36.044 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 3 33.908 -25.157 35.933 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 3 32.791 -26.890 37.355 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 3 34.929 -27.234 32.708 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 3 37.802 -24.015 30.758 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 3 38.467 -23.246 32.135 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 3 36.086 -25.985 30.601 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 4 31.740 -24.720 37.995 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 4 30.536 -23.334 37.737 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 4 32.195 -22.526 38.934 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 4 31.837 -21.340 36.162 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 4 35.271 -21.561 37.879 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 4 33.490 -19.662 36.882 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 4 32.647 -20.259 39.247 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 4 33.697 -23.206 35.262 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 4 36.172 -22.021 31.389 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 4 37.167 -20.758 31.978 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 4 34.380 -23.469 32.646 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 5 31.825 -18.181 39.032 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 5 30.659 -16.865 38.445 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 5 32.620 -15.938 39.074 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 5 32.026 -15.830 36.084 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 5 35.595 -16.006 37.344 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 5 33.962 -14.354 35.919 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 5 33.505 -13.853 38.418 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 5 33.365 -18.464 35.732 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 5 37.712 -15.613 31.254 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 5 37.915 -13.533 34.238 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 5 38.028 -13.666 32.574 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 5A 32.407 -11.800 36.739 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 5A 30.993 -10.970 35.877 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 5A 33.121 -10.089 35.401 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 5A 31.891 -11.337 33.028 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 5A 35.721 -11.575 33.707 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 5A 33.900 -10.481 31.840 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 5A 34.020 -8.805 33.804 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 5A 33.412 -14.273 33.706 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 5A 36.857 -13.709 27.790 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 5A 37.290 -10.501 29.481 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 5A 37.192 -11.363 28.050 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 5B 33.265 -7.941 31.704 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 5B 32.001 -7.022 30.708 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 5B 33.882 -7.085 29.523 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 5B 31.539 -8.859 28.512 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 5B 35.141 -9.707 27.741 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 5B 32.775 -9.172 26.471 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 5B 33.831 -6.905 27.024 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 5B 32.851 -11.137 30.239 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 5B 31.864 -15.439 28.055 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 5B 32.256 -16.042 26.506 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 5B 34.628 -12.854 23.927 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 6 32.646 -7.209 25.332 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 6 31.234 -6.645 24.273 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 6 32.352 -7.876 22.958 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 6 29.577 -8.964 23.939 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 6 32.307 -11.206 22.617 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 6 29.774 -10.551 22.074 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 6 31.381 -8.720 21.036 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 6 30.789 -9.962 25.617 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 6 30.007 -15.003 24.636 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 6 29.694 -11.324 27.351 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 7 31.016 -8.978 19.180 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 7 29.695 -8.074 18.248 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 7 29.712 -9.930 17.272 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 7 27.224 -8.855 18.631 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 7 27.453 -12.374 18.694 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 7 25.895 -9.762 18.931 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 7 25.481 -10.059 17.548 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 7 27.719 -10.242 21.650 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 7 27.144 -17.055 22.361 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 7 27.037 -16.490 18.783 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 7 26.595 -17.411 20.108 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 8 26.385 -6.930 13.561 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 8 26.877 -5.909 15.028 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 8 24.880 -5.198 14.150 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 8 24.687 -6.642 16.858 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 8 21.946 -7.250 14.836 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 8 23.411 -7.283 17.505 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 8 22.706 -6.088 17.812 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 8 24.613 -9.713 15.117 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 8 21.515 -13.413 14.392 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 8 19.834 -13.471 14.093 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 8 17.929 -9.115 14.120 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 9 22.280 -2.874 15.147 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 9 23.293 -1.409 15.655 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 9 21.243 -0.831 14.738 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 9 21.395 -0.242 17.699 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 9 18.167 -1.273 16.401 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 9 19.951 0.053 18.575 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 9 19.506 1.316 17.884 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 9 19.974 -3.787 17.592 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 9 14.990 -2.903 18.794 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 9 18.738 -5.556 18.796 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 10 22.690 3.142 14.092 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 10 22.930 1.333 14.422 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 10 24.679 2.894 13.506 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 10 24.771 3.277 16.672 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 10 25.541 6.016 14.204 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 10 26.585 4.764 16.424 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 10 27.248 3.394 14.429 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 10 22.454 5.418 15.215 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 10 21.261 8.585 18.502 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 10 22.781 9.225 18.961 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 10 20.672 6.755 16.743 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 11 28.792 2.991 16.175 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 11 29.495 1.965 17.549 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 11 30.598 3.843 17.605 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 11 28.786 3.146 19.977 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 11 29.547 6.770 19.044 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 11 29.749 4.959 21.192 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 11 31.782 4.578 19.760 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 11 26.813 4.818 18.411 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 11 23.269 6.809 20.822 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 11 24.097 7.904 21.844 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 11 24.200 5.153 19.031 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 12 32.054 4.450 21.735 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 12 32.442 3.419 23.225 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 12 32.221 5.510 23.915 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 12 30.053 3.514 24.802 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 12 29.380 7.281 24.421 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 12 29.274 5.212 26.340 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 12 31.667 6.020 26.333 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 12 28.633 4.377 22.632 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 12 24.679 6.859 24.933 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 12 26.338 3.693 22.049 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 13 31.942 4.829 28.521 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 13 32.089 3.320 29.588 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 13 31.183 5.224 30.647 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 13 29.071 3.103 30.138 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 13 28.228 6.841 30.021 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 13 27.537 4.501 31.390 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 13 29.629 5.434 32.518 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 13 28.707 4.369 27.647 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 13 24.534 3.956 25.449 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 13 23.503 4.873 26.463 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 13 27.097 3.473 25.660 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 14 28.597 4.563 33.592 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 14 28.456 3.371 35.004 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 14 26.872 5.138 34.956 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 14 25.616 2.481 34.055 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 14 24.463 5.941 32.747 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 14 23.472 3.686 34.135 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 14 24.633 5.118 35.906 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 14 26.222 3.380 30.942 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 14 22.555 1.947 27.986 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 14 20.888 2.319 27.969 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 14 19.703 5.189 31.560 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 15 23.245 4.130 36.664 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 15 22.574 2.938 37.913 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 15 20.868 4.129 37.164 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 15 20.992 1.159 36.233 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 15 19.192 3.932 34.269 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 15 18.708 1.428 35.477 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 15 18.524 3.131 37.343 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 15 22.319 2.208 33.629 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 15 17.293 0.618 29.231 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 15 15.620 2.251 32.010 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 15 15.574 1.145 30.755 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 16 17.457 1.526 37.548 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 16 16.903 0.170 38.683 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 16 15.366 0.541 37.030 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 16 17.124 -2.014 36.621 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 16 15.510 -0.146 33.725 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 16 15.654 -2.693 34.875 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 16 13.834 -1.506 36.082 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 16 18.669 -0.033 35.131 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 16 18.298 -2.585 30.622 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 16 20.754 -0.599 33.959 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 18 13.750 -5.914 38.115 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 18 13.712 -5.450 36.322 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 18 13.004 -6.390 35.689 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 18 11.105 -4.776 35.847 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 18 12.288 -7.445 33.748 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 18 10.072 -5.540 34.753 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 18 10.468 -4.733 33.493 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 18 11.936 -8.305 37.163 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 18 9.382 -12.528 32.398 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 18 10.134 -9.483 30.603 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 18 9.195 -10.857 30.779 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 19 11.545 -3.997 31.288 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 19 11.083 -2.250 30.880 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 19 10.226 -2.678 29.446 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 19 9.630 -0.702 31.732 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 19 6.786 -1.921 30.678 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 19 8.340 -0.006 32.119 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 19 8.164 0.842 30.971 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 19 8.208 -1.967 33.981 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 19 4.342 -7.543 33.011 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 19 4.526 -5.973 29.720 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 19 3.687 -6.927 30.809 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 20 10.362 -1.794 27.696 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 20 9.675 -0.958 26.192 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 20 10.308 -2.486 25.215 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 20 7.592 -1.204 25.068 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 20 7.486 -4.672 24.528 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 20 6.286 -1.878 24.364 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 20 6.794 -1.934 22.968 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 20 7.077 -3.461 27.735 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 20 4.019 -7.132 25.679 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 20 5.464 -4.603 29.235 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 20A 11.302 0.905 24.203 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 20A 12.239 0.726 22.613 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 20A 12.405 1.494 25.130 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 20A 13.484 2.036 25.039 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 20A 12.528 -0.317 27.884 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 20A 13.321 2.295 27.449 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 20A 10.780 2.219 27.029 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 20A 14.296 -1.247 25.253 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 20A 18.823 -1.552 26.592 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 20A 18.823 -0.677 28.063 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 20A 16.860 -2.060 24.940 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 21 11.473 4.096 27.707 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 21 11.727 5.923 27.529 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 21 12.112 5.655 29.572 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 21 14.480 6.330 27.599 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 21 15.075 4.767 30.962 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 21 15.783 6.953 29.527 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 21 13.488 7.467 30.619 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 21 14.699 3.552 27.700 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 21 19.605 3.731 29.424 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 21 16.439 2.391 26.386 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 22 14.585 9.044 30.009 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 22 14.286 10.770 29.406 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 22 15.898 10.283 31.202 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 22 17.424 10.536 28.524 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 22 18.497 8.134 31.348 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 22 19.467 10.321 29.815 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 22 18.150 11.354 31.710 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 22 16.973 7.206 28.279 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 22 23.750 6.062 28.377 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 22 23.141 8.384 31.113 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 22 24.174 7.793 29.936 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 23 19.238 13.324 30.879 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 23 19.249 14.979 30.048 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 23 21.254 14.274 31.158 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 23 21.559 13.986 28.128 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 23 23.261 11.599 30.659 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 23 23.884 13.411 28.556 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 23 23.607 14.843 30.624 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 23 20.496 10.626 28.771 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 23 26.407 8.211 26.218 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 23 27.371 10.983 28.375 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 23 27.683 10.036 27.032 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 24 25.033 15.945 28.991 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 24 25.309 17.174 27.632 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 24 27.122 15.945 27.735 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 24 25.334 15.551 25.233 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 24 27.686 12.840 26.592 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 24 27.209 14.327 24.275 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 24 28.646 15.810 25.774 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 24 24.029 13.256 26.550 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 24 26.310 8.304 22.374 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 24 29.277 10.198 23.303 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 24 28.475 9.250 22.181 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 25 28.978 16.119 24.043 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 25 29.181 17.329 22.655 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 25 30.400 15.374 22.352 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 25 28.027 15.622 20.462 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 25 29.274 12.208 21.716 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 25 28.841 13.651 19.332 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 25 31.123 14.321 20.175 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 25 26.336 13.961 22.766 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 25 24.953 8.681 18.601 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 25 28.500 9.302 18.155 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 25 27.045 8.764 17.527 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 26 30.864 14.850 17.774 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 26 30.766 16.070 16.383 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 26 30.726 13.921 15.607 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 26 28.032 15.359 15.338 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 26 28.400 11.519 15.789 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 26 27.362 13.417 13.975 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 26 29.860 13.222 13.461 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 26 27.418 13.968 17.961 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 26 23.657 10.983 15.959 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 26 25.190 14.037 19.024 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 27 28.899 13.624 12.046 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 27 28.649 14.636 10.515 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 27 27.798 12.608 10.160 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 27 25.675 14.856 10.557 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 27 25.121 11.028 11.170 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 27 24.082 13.209 9.626 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 27 26.068 12.352 8.314 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 27 25.342 13.448 13.704 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 27 18.915 11.370 12.444 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 27 20.808 10.412 9.496 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 27 19.352 10.874 10.179 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 28 24.821 13.366 7.235 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 28 24.670 14.575 5.838 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 28 23.034 12.827 5.984 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 28 21.864 15.470 7.076 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 28 20.820 12.067 8.440 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 28 19.736 14.315 7.233 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 28 20.648 12.862 5.335 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 28 23.050 14.335 9.657 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 28 21.024 16.381 13.410 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 28 19.392 15.890 13.250 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 28 23.095 15.843 11.905 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 29 18.925 14.775 4.310 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 29 18.641 16.346 3.368 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 29 16.687 15.427 4.218 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 29 17.509 17.995 5.618 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 29 15.623 15.205 7.456 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 29 15.219 17.803 6.659 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 29 14.732 16.374 4.505 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 29 18.949 16.834 7.658 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 29 18.351 19.090 11.986 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 29 16.992 19.272 13.004 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 29 13.116 17.301 11.107 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 30 13.837 18.942 4.253 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 30 13.882 20.618 3.466 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 30 12.069 20.139 4.953 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 30 13.833 22.190 6.132 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 30 12.304 19.508 8.395 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 30 12.267 22.284 7.997 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 30 10.592 21.306 6.305 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 30 15.737 19.936 7.396 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 30 14.494 22.091 13.814 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 30 11.207 21.819 12.225 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 30 12.191 22.554 13.362 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 31 10.396 22.919 6.916 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 31 9.512 24.315 6.077 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 31 8.942 23.761 8.369 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 31 10.593 26.297 8.267 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 31 10.983 23.836 11.157 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 31 10.407 26.543 10.596 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 31 8.285 25.281 10.442 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 31 13.207 24.190 8.349 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 31 15.947 25.786 14.434 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 31 12.362 25.817 15.000 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 31 13.884 26.387 15.397 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 32 10.933 28.009 8.410 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 32 10.241 29.685 8.794 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 32 11.267 30.062 9.499 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 32 12.031 31.023 8.680 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 32 11.167 30.286 12.189 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 32 12.047 32.277 10.660 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 32 9.513 32.271 10.512 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 32 12.512 28.398 9.547 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 32 17.115 27.754 10.352 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 32 17.411 28.810 11.666 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 32 14.912 27.260 9.056 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 33 12.569 35.709 8.273 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 33 13.354 34.355 9.264 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 33 14.435 34.920 9.885 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 33 15.306 35.276 9.015 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 33 15.206 31.661 10.047 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 33 16.865 33.850 10.089 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 33 15.401 34.019 12.130 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 33 14.413 33.893 7.354 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 33 17.862 30.130 6.355 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 33 15.171 33.608 5.028 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 34 19.180 36.686 11.851 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 34 18.939 35.188 10.788 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 34 20.160 34.555 10.736 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 34 21.075 35.192 10.213 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 34 18.653 33.209 8.088 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 34 21.328 33.321 8.709 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 34 20.221 31.953 10.576 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 34 20.172 36.361 9.062 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 34 19.493 35.448 3.986 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 34 20.811 38.136 7.467 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 35 24.218 31.533 12.995 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 35 24.764 31.067 11.285 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 35 24.589 29.253 12.744 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 35 22.257 29.370 10.722 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 35 22.046 27.854 14.338 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 35 21.586 27.194 11.501 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 35 23.976 26.781 11.889 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 35 20.280 29.567 11.813 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 35 16.003 29.729 13.835 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 35 16.298 28.995 15.353 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 35 17.648 30.208 11.854 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 36 26.557 27.314 9.333 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 36 26.096 25.946 8.171 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 36 28.251 26.114 9.442 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 36 26.384 26.569 11.962 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 36 30.073 27.197 11.182 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 36 28.356 26.397 13.272 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 36 28.885 24.342 11.995 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 36 27.277 29.326 10.353 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 36 28.179 33.007 13.434 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 36 29.297 33.201 14.710 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 36 31.881 29.251 15.348 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 37 28.239 24.186 14.328 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 37 27.047 23.493 15.568 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 37 28.398 24.410 16.835 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 37 25.461 25.449 16.601 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 37 28.207 27.670 17.836 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 37 25.774 26.732 18.560 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 37 27.474 24.965 19.206 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 37 25.763 26.933 14.983 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 37 24.527 31.556 13.960 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 37 25.035 33.054 14.604 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 37 28.123 32.445 18.165 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 38 25.732 24.996 20.274 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 38 24.392 23.996 21.073 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 38 24.642 26.013 22.110 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 38 22.148 25.921 20.215 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 38 24.086 29.121 21.245 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 38 21.471 28.006 21.312 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 38 22.716 27.003 23.313 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 38 22.269 27.282 18.482 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 38 21.979 31.226 15.609 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 38 22.601 32.810 15.763 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 38 24.952 33.360 19.854 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 39 19.666 27.082 22.428 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 39 18.210 25.936 22.360 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 39 17.116 27.314 21.896 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 39 17.506 24.553 20.526 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 39 16.021 27.674 18.768 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 39 15.462 24.895 19.341 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 39 14.673 26.104 21.300 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 39 19.145 26.437 18.572 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 39 19.612 25.181 14.038 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 39 17.996 25.245 13.479 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 39 20.589 25.679 16.412 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 40 13.129 25.028 21.781 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 40 12.551 23.268 21.831 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 40 11.101 24.067 20.624 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 40 12.952 21.817 19.652 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 40 11.334 24.250 17.225 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 40 11.470 21.553 17.770 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 40 9.682 22.538 19.311 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 40 14.457 24.055 18.708 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 40 17.503 22.838 15.286 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 40 16.448 22.391 14.015 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 40 16.948 23.704 17.702 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 41 9.118 20.587 18.833 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 41 8.993 18.757 19.094 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 41 8.268 18.987 17.120 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 41 10.879 17.425 17.632 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 41 10.178 19.132 14.298 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 41 10.754 16.621 15.374 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 41 8.250 16.947 15.621 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 41 12.102 19.940 17.075 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 41 14.683 18.597 12.764 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 41 14.533 20.364 16.999 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 42 8.726 15.231 15.321 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 42 8.640 13.443 15.798 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 42 9.177 13.706 13.587 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 42 11.485 12.665 15.288 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 42 11.936 14.855 12.083 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 42 12.615 12.287 13.122 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 42 10.234 12.089 12.197 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 42 12.613 15.781 15.448 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 42 18.216 14.770 11.602 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 42 15.507 13.169 9.776 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 42 17.134 13.238 10.160 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 43 11.503 10.285 12.523 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 43 11.270 8.499 12.958 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 43 12.991 9.154 11.361 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 43 14.283 8.536 14.046 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 43 15.614 11.303 11.716 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 43 16.423 8.899 12.985 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 43 15.249 8.241 10.839 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 43 13.794 11.423 14.630 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 43 18.786 12.866 14.869 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 43 14.562 12.608 16.653 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 44 16.138 7.172 10.892 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 44 16.324 5.336 10.722 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 44 18.134 6.354 9.846 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 44 18.606 4.712 12.364 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 44 20.704 7.505 12.107 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 44 19.896 4.812 13.315 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 44 20.844 4.234 12.429 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 44 17.775 7.989 14.113 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 44 20.213 10.799 17.275 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 44 21.850 11.278 17.375 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 44 24.437 9.294 13.912 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 45 22.473 4.170 9.288 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 45 22.105 3.838 7.503 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 45 23.992 2.726 8.535 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 45 21.538 0.814 8.472 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 45 23.943 0.576 11.254 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 45 22.952 -0.911 9.331 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 45 24.895 0.465 8.292 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 45 20.734 2.381 10.717 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 45 19.455 -3.721 13.578 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 45 22.909 -3.913 12.535 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 45 21.451 -4.676 12.836 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 46 24.124 -1.514 7.550 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 46 23.812 -2.538 6.036 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 46 24.393 -3.963 7.559 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 46 21.418 -3.984 6.624 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 46 22.474 -5.311 10.003 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 46 21.209 -6.126 7.732 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 46 23.723 -6.364 7.282 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 46 21.185 -2.305 8.776 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 46 16.727 -1.984 10.312 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 46 16.451 -3.550 10.944 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 46 18.863 -0.978 9.189 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 47 22.503 -7.690 6.453 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 47 21.732 -8.566 5.013 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 47 21.183 -9.819 6.590 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 47 19.000 -8.202 5.058 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 47 18.517 -9.533 8.610 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 47 17.376 -9.700 6.073 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 47 19.344 -11.369 6.121 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 47 19.256 -6.426 7.262 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 47 14.489 -7.055 9.247 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 47 17.875 -4.413 7.616 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 47A 17.726 -11.823 4.756 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 47A 17.129 -12.247 3.055 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 47A 15.653 -12.806 4.792 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 47A 14.608 -10.482 3.167 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 47A 13.950 -10.877 6.978 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 47A 12.561 -10.728 4.527 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 47A 13.380 -13.165 4.763 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 47A 16.002 -8.438 5.338 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 47A 10.120 -5.946 7.882 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 47A 9.633 -9.539 7.758 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 47A 8.984 -7.998 7.701 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 47B 11.595 -13.599 3.467 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 47B 10.659 -13.630 1.868 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 47B 9.205 -13.638 3.589 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 47B 9.149 -11.254 1.768 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 47B 8.299 -10.857 5.467 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 47B 7.165 -10.534 2.969 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 47B 6.911 -13.015 3.579 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 47B 11.101 -10.165 3.555 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 47B 8.215 -6.036 4.878 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 47B 12.067 -7.919 3.210 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 47C 5.288 -12.323 1.649 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 47C 4.726 -12.443 -0.113 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 47C 3.499 -11.092 1.530 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 47C 4.759 -9.344 -0.427 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 47C 4.835 -8.324 3.273 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 47C 3.818 -7.466 0.767 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 47C 2.158 -9.194 1.672 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 47C 7.421 -9.440 1.491 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 47C 10.240 -5.647 0.950 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 47C 9.191 -4.365 1.383 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 47C 9.787 -8.234 0.880 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 47D 1.159 -7.489 -0.534 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 47D 0.699 -7.360 -2.324 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 47D 0.679 -5.317 -1.550 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 47D 2.958 -5.989 -3.543 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 47D 3.133 -3.157 -0.922 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 47D 3.314 -3.566 -3.689 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 47D 0.840 -3.368 -3.167 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 47D 4.455 -6.377 -1.413 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 47D 7.795 -2.395 -1.564 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 47D 6.865 -6.887 -1.415 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 47E 2.766 -5.351 -8.188 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 47E 4.190 -5.400 -7.002 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 47E 4.393 -3.834 -8.762 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 47E 3.896 -2.516 -6.078 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 47E 2.430 -0.927 -9.097 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 47E 4.114 -0.387 -7.073 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 47E 5.451 -1.539 -8.907 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 47E 0.923 -3.189 -6.588 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 47E -1.738 0.015 -3.997 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 47E -1.846 1.719 -4.040 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 47E 1.166 3.563 -7.218 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 47F 6.948 -0.332 -7.186 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 47F 8.421 -0.476 -6.073 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 47F 7.524 1.717 -6.771 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 47F 6.666 1.113 -3.925 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 47F 4.178 2.745 -6.016 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 47F 5.513 3.126 -3.776 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 47F 7.014 3.914 -5.707 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 47F 4.919 -0.808 -5.093 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 47F -0.483 1.609 -1.607 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 47F 1.039 4.550 -3.099 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 47F 0.147 3.865 -1.861 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 47G 7.280 5.089 -3.396 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 47G 8.156 5.271 -1.773 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 47G 6.342 6.400 -1.533 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 47G 6.869 4.121 0.341 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 47G 3.274 5.181 -0.712 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 47G 4.921 4.943 1.593 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 47G 5.491 7.191 0.531 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 47G 5.270 2.482 -1.403 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 47G 2.720 -1.217 0.100 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 47G 1.471 -0.459 0.992 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 47G 4.731 -0.167 -1.197 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 47H 5.713 5.712 2.771 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 47H 6.777 6.105 4.235 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 47H 4.599 4.887 4.365 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 47H 6.660 3.066 5.080 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 47H 4.107 1.719 2.689 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 47H 5.032 1.325 5.218 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 47H 3.329 3.284 5.308 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 47H 7.577 2.791 2.220 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 47H 6.918 -4.050 2.045 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 47H 3.807 -2.876 3.465 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 47H 4.974 -4.069 3.338 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 47I 3.068 2.388 7.068 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 47I 3.330 2.097 8.879 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 47I 2.014 0.479 8.111 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 47I 4.798 -0.329 9.067 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 47I 3.142 -2.317 6.357 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 47I 4.193 -2.617 8.866 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 47I 1.790 -1.812 9.142 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 47I 5.795 0.250 6.280 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 47I 9.555 -2.574 4.909 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 47I 9.710 -4.261 4.694 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 47I 5.684 -6.523 5.828 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 47J 2.638 -3.051 11.286 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 47J 3.448 -3.104 12.952 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 47J 3.313 -5.172 11.866 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 47J 6.052 -4.395 12.359 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 47J 5.114 -6.189 9.079 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 47J 6.558 -6.644 11.352 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 47J 3.942 -6.974 11.906 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 47J 5.940 -2.967 9.614 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 47J 10.269 -2.369 7.790 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 47J 10.791 -3.985 7.574 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 47J 8.007 -1.449 8.737 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 47K 5.661 -8.103 13.658 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 47K 6.087 -8.277 15.454 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 47K 6.893 -9.985 14.004 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 47K 9.164 -8.070 14.790 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 47K 9.072 -9.777 11.383 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 47K 10.681 -9.572 13.656 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 47K 9.001 -11.385 14.190 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 47K 8.436 -6.320 12.417 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 47K 12.475 -4.210 10.607 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 47K 13.887 -4.856 9.896 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 47K 13.773 -9.603 9.833 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 47L 10.826 -11.531 15.376 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 47L 11.650 -11.671 17.029 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 47L 12.998 -12.409 15.314 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 47L 13.965 -9.845 16.606 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 47L 14.564 -10.607 12.884 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 47L 15.976 -10.101 15.246 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 47L 15.394 -12.591 15.264 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 47L 12.391 -8.196 14.566 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 47L 17.619 -5.466 11.052 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 47L 18.468 -8.989 11.444 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 47L 18.976 -7.405 11.263 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 48 17.099 -12.028 17.418 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 48 17.310 -12.332 19.234 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 48 19.230 -11.711 17.903 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 48 18.541 -9.607 19.806 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 48 19.460 -8.346 16.582 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 48 19.043 -8.019 19.641 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 48 20.518 -8.230 19.692 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 48 16.000 -7.998 17.535 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 48 15.833 -3.809 14.953 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 48 17.023 -2.978 14.054 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 48 21.221 -5.175 14.254 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 50 21.868 -11.572 17.349 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 50 21.524 -13.251 18.052 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 50 22.311 -14.134 16.856 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 50 21.172 -14.574 19.329 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 50 24.703 -15.807 19.076 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 50 22.091 -16.731 19.425 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 50 22.438 -16.464 16.910 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 50 24.473 -13.019 20.881 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 50 23.478 -18.437 24.983 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 50 22.677 -19.625 21.636 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 50 22.450 -19.734 23.290 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 51 20.689 -18.117 17.281 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 51 18.897 -18.586 17.234 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 51 20.010 -20.333 18.004 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 51 18.068 -18.946 19.898 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 51 21.099 -20.731 21.271 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 51 18.358 -20.762 21.433 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 51 19.047 -22.109 19.345 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 51 20.447 -17.401 20.574 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 51 20.269 -18.755 25.601 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 51 20.407 -15.606 22.260 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 52 16.218 -22.329 20.530 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 52 14.413 -21.997 20.277 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 52 15.195 -22.875 22.391 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 52 13.995 -20.383 22.849 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 52 17.398 -21.441 24.627 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 52 14.605 -20.861 25.247 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 52 14.598 -23.279 24.497 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 52 17.058 -18.651 22.649 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 52 18.016 -17.398 29.333 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 52 16.773 -20.817 29.195 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 52 16.915 -19.373 30.029 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 53 12.762 -23.512 25.833 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 53 11.114 -22.901 26.418 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 53 12.446 -23.372 28.191 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 53 11.096 -20.980 28.183 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 53 14.788 -20.819 29.220 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 53 12.146 -20.446 30.280 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 53 12.599 -22.941 30.442 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 53 13.251 -19.361 26.372 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 53 15.761 -14.980 31.014 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 53 15.441 -18.190 32.759 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 53 15.444 -16.518 32.830 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 54 11.066 -22.143 31.814 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 54 9.363 -22.265 32.532 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 54 10.795 -21.064 33.876 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 54 8.745 -19.269 32.444 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 54 12.307 -18.121 33.565 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 54 9.565 -17.503 33.978 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 54 10.113 -19.425 35.564 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 54 10.411 -18.733 30.662 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 54 12.346 -13.954 31.387 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 54 10.262 -17.119 28.798 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 55 7.597 -17.881 35.260 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 55 5.778 -18.085 35.548 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 55 6.790 -15.874 35.587 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 55 5.304 -16.155 32.984 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 55 8.674 -14.214 33.341 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 55 5.977 -13.744 32.708 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 55 6.067 -13.825 35.310 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 55 7.173 -17.023 31.802 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 55 8.823 -13.202 28.688 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 55 7.197 -17.443 29.377 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 56 0.731 -15.122 32.610 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 56 2.011 -15.393 31.296 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 56 0.692 -13.867 30.501 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 56 3.602 -13.155 30.992 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 56 0.796 -10.519 31.172 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 56 3.180 -11.091 29.795 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 56 1.302 -12.409 28.666 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 56 2.018 -11.976 33.817 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 56 4.565 -8.714 36.122 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 56 4.781 -7.506 34.928 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 56 3.308 -11.001 35.989 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 57 4.100 -11.703 27.798 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 57 5.656 -12.386 27.058 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 57 5.708 -10.081 27.533 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 57 7.762 -11.508 28.868 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 57 5.651 -8.758 30.769 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 57 8.425 -9.320 29.786 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 57 7.197 -8.368 27.787 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 57 5.624 -11.865 31.862 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 57 7.723 -10.896 36.151 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 57 8.539 -9.521 36.752 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 57 8.875 -6.135 33.422 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 58 9.606 -8.696 28.007 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 58 10.929 -8.856 26.718 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 58 11.977 -7.707 27.877 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 58 12.781 -10.417 26.732 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 58 14.302 -9.765 29.790 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 58 14.033 -11.298 27.197 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 58 15.104 -10.506 26.732 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 58 12.320 -12.731 29.153 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 58 12.907 -14.289 33.740 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 58 13.505 -13.528 35.147 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 58 14.994 -9.107 34.220 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 59 16.651 -7.335 23.679 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 59 17.349 -7.801 25.331 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 59 18.749 -6.875 25.201 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 59 16.671 -7.356 27.476 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 59 18.876 -4.286 27.393 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 59 18.149 -6.381 29.030 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 59 19.957 -7.261 27.570 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 59 15.681 -4.872 26.125 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 59 15.812 -2.184 30.574 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 59 13.609 -3.757 26.863 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 60 20.237 -7.573 29.231 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 60 20.311 -8.910 30.512 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 60 20.800 -7.239 31.651 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 60 18.427 -9.002 32.309 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 60 17.718 -5.817 33.126 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 60 17.217 -8.730 33.229 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 60 17.816 -8.670 34.494 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 60 17.062 -7.709 30.188 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 60 13.797 -3.915 31.595 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 60 15.084 -7.294 28.764 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 61 18.570 -9.470 36.570 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 61 19.671 -10.940 36.818 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 61 17.930 -11.775 37.423 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 61 19.571 -12.816 35.019 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 61 15.824 -13.438 35.330 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 61 18.260 -14.828 35.107 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 61 17.924 -14.309 37.577 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 61 17.414 -11.081 33.566 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 61 16.304 -12.037 29.071 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 61 15.687 -13.631 29.170 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 61 17.260 -10.487 30.928 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 62 19.568 -16.080 37.356 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 62 21.199 -16.914 37.069 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 62 19.455 -18.338 36.698 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 62 21.171 -17.785 34.361 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 62 17.414 -18.230 33.875 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 62 19.838 -19.430 33.172 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 62 19.141 -20.272 35.531 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 62 19.170 -15.403 33.895 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 62 19.141 -13.876 29.432 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 62 18.639 -15.268 28.572 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 62 19.534 -13.521 31.971 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 63 21.114 -22.028 34.791 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 63 22.848 -22.585 34.446 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 63 21.538 -23.809 33.179 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 63 23.355 -21.746 31.764 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 63 20.159 -22.732 30.183 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 63 22.752 -22.835 29.687 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 63 22.190 -24.850 31.335 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 63 21.795 -19.833 32.052 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 63 21.630 -16.507 28.440 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 63 21.105 -16.610 26.818 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 63 19.740 -21.019 25.706 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 64 24.037 -25.124 29.807 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 64 25.822 -25.250 29.326 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 64 24.441 -25.597 27.537 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 64 26.185 -23.190 27.358 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 64 22.698 -23.059 25.875 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 64 25.327 -22.897 25.110 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 64 24.758 -25.410 25.246 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 64 24.600 -21.967 28.663 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 64 25.193 -17.321 28.194 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 64 24.561 -17.021 26.632 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 64 25.362 -19.533 29.542 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 66 26.405 -25.172 23.904 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 66 28.149 -25.438 23.334 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 66 27.042 -24.701 21.596 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 66 29.043 -22.669 22.876 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 66 26.040 -21.609 20.812 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 66 28.755 -21.351 20.854 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 66 28.318 -23.615 19.747 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 66 26.910 -22.024 24.197 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 66 27.474 -17.742 26.084 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 66 27.405 -16.724 24.709 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 66 27.249 -20.331 26.271 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 67 29.912 -22.454 19.014 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 67 31.729 -22.160 18.794 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 67 31.060 -20.591 17.714 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 67 32.796 -20.260 20.256 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 67 30.475 -17.503 18.938 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 67 33.186 -17.982 19.607 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 67 32.895 -18.774 17.249 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 67 30.178 -19.769 21.519 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 67 30.870 -14.767 22.769 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 67 29.787 -19.091 23.862 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 67A 34.950 -18.118 17.450 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 67A 36.750 -18.383 17.805 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 67A 36.394 -16.207 17.825 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 67A 36.957 -17.514 20.587 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 67A 35.001 -14.300 20.239 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 67A 37.226 -15.263 21.445 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 67A 37.871 -14.699 19.004 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 67A 34.327 -17.761 20.584 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 67A 33.611 -14.925 24.874 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 67A 33.203 -18.829 22.506 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 67B 39.469 -14.481 20.392 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 67B 41.188 -14.929 20.918 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 67B 40.397 -13.029 21.982 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 67B 40.632 -15.462 23.806 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 67B 37.926 -12.911 24.422 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 67B 40.076 -14.092 25.667 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 67B 40.990 -12.165 24.317 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 67B 37.932 -16.000 22.789 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 67B 35.757 -15.932 27.512 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 67B 36.604 -17.963 23.485 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 68 42.889 -12.206 25.662 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 68 44.397 -12.960 26.434 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 68 43.394 -11.625 27.934 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 68 43.123 -14.652 28.520 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 68 40.561 -12.058 29.695 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 68 42.287 -13.980 30.717 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 68 43.716 -11.881 30.340 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 68 40.718 -14.394 27.136 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 68 37.502 -17.701 28.184 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 68 37.082 -17.301 29.795 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 68 39.189 -16.551 26.554 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 69 44.370 -12.893 31.780 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 69 45.713 -13.807 32.670 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 69 44.006 -13.076 34.075 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 69 43.937 -16.112 33.567 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 69 40.760 -14.125 34.248 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 69 42.228 -16.231 35.288 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 69 43.290 -14.103 36.222 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 69 41.970 -15.451 31.110 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 69 37.403 -19.655 34.054 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 69 38.439 -17.378 36.696 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 69 37.880 -18.888 36.241 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 70 44.017 -16.012 37.518 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 70 45.428 -16.972 38.238 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 70 43.312 -17.250 39.299 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 70 44.084 -19.694 37.652 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 70 40.449 -18.634 37.929 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 70 42.152 -20.822 38.425 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 70 42.333 -19.322 40.437 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 70 42.365 -17.982 35.055 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 70 38.264 -23.458 34.327 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 70 38.528 -22.951 37.917 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 70 38.305 -23.992 36.626 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 71 42.819 -21.590 41.494 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 71 43.994 -23.014 41.651 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 71 42.024 -23.897 41.800 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 71 43.965 -24.819 39.782 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 71 40.171 -24.841 39.025 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 71 42.491 -26.582 39.182 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 71 41.615 -26.548 41.421 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 71 42.284 -22.558 37.515 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 71 39.736 -27.344 33.317 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 71 39.432 -28.788 36.641 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 71 39.613 -29.005 34.992 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RC3 A 72 42.553 -28.692 41.998 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RC3 A 72 44.075 -29.700 41.679 1.00 0.00 H Missing atom added: ATOM 23 H4' RC3 A 72 42.172 -30.758 40.933 1.00 0.00 H Missing atom added: ATOM 24 H3' RC3 A 72 44.295 -30.780 39.320 1.00 0.00 H Missing atom added: ATOM 27 H1' RC3 A 72 40.891 -29.861 37.688 1.00 0.00 H Missing atom added: ATOM 25 H2' RC3 A 72 43.014 -31.888 37.639 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RC3 A 72 41.473 -32.615 39.375 1.00 0.00 H Missing atom added: ATOM 30 H6 RC3 A 72 43.385 -27.777 38.080 1.00 0.00 H Missing atom added: ATOM 28 H41 RC3 A 72 44.350 -26.508 33.616 1.00 0.00 H Missing atom added: ATOM 29 H42 RC3 A 72 43.523 -27.708 32.717 1.00 0.00 H Missing atom added: ATOM 31 H5 RC3 A 72 44.540 -26.182 36.204 1.00 0.00 H Missing atom added: ATOM 32 H3T RC3 A 72 43.001 -32.732 39.755 1.00 0.00 H Missing atom added: ATOM 4 OP3 G A 1 39.878 -27.490 22.466 1.00131.64 O Number of atoms: 2754 Number of residues: 86 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2966 Number of angles built: 5309 Number of dihedrals built: 8083 Number of impropers built: 583 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3782606 Number of van der Waals pairs: 363967 Number of H-bonds built: 92 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 34 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 28707.8207 kcal/mol (28620.7605 without restraints) Performing minimization step: 2. Total energy = 28220.1356 kcal/mol (28138.7688 without restraints) Performing minimization step: 3. Total energy = 27777.9951 kcal/mol (27701.7009 without restraints) Performing minimization step: 4. Total energy = 27376.4326 kcal/mol (27304.6584 without restraints) Performing minimization step: 5. Total energy = 27011.0257 kcal/mol (26943.2792 without restraints) Performing minimization step: 6. Total energy = 26677.8322 kcal/mol (26613.6744 without restraints) Performing minimization step: 7. Total energy = 26373.3355 kcal/mol (26312.3746 without restraints) Performing minimization step: 8. Total energy = 26094.3966 kcal/mol (26036.2828 without restraints) Performing minimization step: 9. Total energy = 25838.2129 kcal/mol (25782.6340 without restraints) Performing minimization step: 10. Total energy = 25602.2815 kcal/mol (25548.9587 without restraints) Performing minimization step: 11. Total energy = 25384.3679 kcal/mol (25333.0523 without restraints) Performing minimization step: 12. Total energy = 25182.4781 kcal/mol (25132.9477 without restraints) Performing minimization step: 13. Total energy = 24994.8348 kcal/mol (24946.8920 without restraints) Performing minimization step: 14. Total energy = 24819.8560 kcal/mol (24773.3249 without restraints) Performing minimization step: 15. Total energy = 24656.1346 kcal/mol (24610.8592 without restraints) Performing minimization step: 16. Total energy = 24502.4229 kcal/mol (24458.2646 without restraints) Performing minimization step: 17. Total energy = 24357.6164 kcal/mol (24314.4533 without restraints) Performing minimization step: 18. Total energy = 24220.7392 kcal/mol (24178.4631 without restraints) Performing minimization step: 19. Total energy = 24090.9307 kcal/mol (24049.4467 without restraints) Performing minimization step: 20. Total energy = 23967.4335 kcal/mol (23926.6582 without restraints) Performing minimization step: 21. Total energy = 23849.5823 kcal/mol (23809.4424 without restraints) Performing minimization step: 22. Total energy = 23736.7940 kcal/mol (23697.2253 without restraints) Performing minimization step: 23. Total energy = 23628.5571 kcal/mol (23589.5034 without restraints) Performing minimization step: 24. Total energy = 23524.4240 kcal/mol (23485.8363 without restraints) Performing minimization step: 25. Total energy = 23424.0019 kcal/mol (23385.8368 without restraints) Performing minimization step: 26. Total energy = 23326.9473 kcal/mol (23289.1674 without restraints) Performing minimization step: 27. Total energy = 23232.9589 kcal/mol (23195.5309 without restraints) Performing minimization step: 28. Total energy = 23141.7719 kcal/mol (23104.6669 without restraints) Performing minimization step: 29. Total energy = 23053.1532 kcal/mol (23016.3455 without restraints) Performing minimization step: 30. Total energy = 22966.8975 kcal/mol (22930.3646 without restraints) Performing minimization step: 31. Total energy = 22882.8232 kcal/mol (22846.5452 without restraints) Performing minimization step: 32. Total energy = 22800.7695 kcal/mol (22764.7287 without restraints) Performing minimization step: 33. Total energy = 22720.5936 kcal/mol (22684.7743 without restraints) Performing minimization step: 34. Total energy = 22642.1676 kcal/mol (22606.5557 without restraints) Performing minimization step: 35. Total energy = 22565.3772 kcal/mol (22529.9600 without restraints) Performing minimization step: 36. Total energy = 22490.1203 kcal/mol (22454.8867 without restraints) Performing minimization step: 37. Total energy = 22416.3050 kcal/mol (22381.2449 without restraints) Performing minimization step: 38. Total energy = 22343.8481 kcal/mol (22308.9523 without restraints) Performing minimization step: 39. Total energy = 22272.6741 kcal/mol (22237.9343 without restraints) Performing minimization step: 40. Total energy = 22202.7143 kcal/mol (22168.1228 without restraints) Performing minimization step: 41. Total energy = 22133.9061 kcal/mol (22099.4561 without restraints) Performing minimization step: 42. Total energy = 22066.1924 kcal/mol (22031.8775 without restraints) Performing minimization step: 43. Total energy = 21999.5207 kcal/mol (21965.3351 without restraints) Performing minimization step: 44. Total energy = 21933.8427 kcal/mol (21899.7811 without restraints) Performing minimization step: 45. Total energy = 21869.1133 kcal/mol (21835.1708 without restraints) Performing minimization step: 46. Total energy = 21805.2922 kcal/mol (21771.4644 without restraints) Performing minimization step: 47. Total energy = 21742.3407 kcal/mol (21708.6231 without restraints) Performing minimization step: 48. Total energy = 21680.2232 kcal/mol (21646.6120 without restraints) Performing minimization step: 49. Total energy = 21618.9064 kcal/mol (21585.3979 without restraints) Performing minimization step: 50. Total energy = 21558.3594 kcal/mol (21524.9502 without restraints) Performing minimization step: 51. Total energy = 21498.5537 kcal/mol (21465.2406 without restraints) Performing minimization step: 52. Total energy = 21439.4610 kcal/mol (21406.2411 without restraints) Performing minimization step: 53. Total energy = 21381.0566 kcal/mol (21347.9270 without restraints) Performing minimization step: 54. Total energy = 21323.3164 kcal/mol (21290.2745 without restraints) Performing minimization step: 55. Total energy = 21266.2173 kcal/mol (21233.2605 without restraints) Performing minimization step: 56. Total energy = 21209.7383 kcal/mol (21176.8644 without restraints) Performing minimization step: 57. Total energy = 21153.8592 kcal/mol (21121.0661 without restraints) Performing minimization step: 58. Total energy = 21098.5607 kcal/mol (21065.8462 without restraints) Performing minimization step: 59. Total energy = 21043.8250 kcal/mol (21011.1872 without restraints) Performing minimization step: 60. Total energy = 20989.6347 kcal/mol (20957.0714 without restraints) Performing minimization step: 61. Total energy = 20935.9730 kcal/mol (20903.4827 without restraints) Performing minimization step: 62. Total energy = 20882.8247 kcal/mol (20850.4056 without restraints) Performing minimization step: 63. Total energy = 20830.1750 kcal/mol (20797.8255 without restraints) Performing minimization step: 64. Total energy = 20778.0093 kcal/mol (20745.7280 without restraints) Performing minimization step: 65. Total energy = 20726.3145 kcal/mol (20694.0997 without restraints) Performing minimization step: 66. Total energy = 20675.0777 kcal/mol (20642.9282 without restraints) Performing minimization step: 67. Total energy = 20624.2864 kcal/mol (20592.2007 without restraints) Performing minimization step: 68. Total energy = 20573.9286 kcal/mol (20541.9056 without restraints) Performing minimization step: 69. Total energy = 20523.9936 kcal/mol (20492.0322 without restraints) Performing minimization step: 70. Total energy = 20474.4699 kcal/mol (20442.5686 without restraints) Performing minimization step: 71. Total energy = 20425.3480 kcal/mol (20393.5058 without restraints) Performing minimization step: 72. Total energy = 20376.6170 kcal/mol (20344.8328 without restraints) Performing minimization step: 73. Total energy = 20328.2675 kcal/mol (20296.5404 without restraints) Performing minimization step: 74. Total energy = 20280.2910 kcal/mol (20248.6200 without restraints) Performing minimization step: 75. Total energy = 20232.6781 kcal/mol (20201.0622 without restraints) Performing minimization step: 76. Total energy = 20185.4203 kcal/mol (20153.8587 without restraints) Performing minimization step: 77. Total energy = 20138.5100 kcal/mol (20107.0017 without restraints) Performing minimization step: 78. Total energy = 20091.9386 kcal/mol (20060.4828 without restraints) Performing minimization step: 79. Total energy = 20045.6988 kcal/mol (20014.2948 without restraints) Performing minimization step: 80. Total energy = 19999.7834 kcal/mol (19968.4304 without restraints) Performing minimization step: 81. Total energy = 19954.1845 kcal/mol (19922.8815 without restraints) Performing minimization step: 82. Total energy = 19908.8971 kcal/mol (19877.6437 without restraints) Performing minimization step: 83. Total energy = 19863.9131 kcal/mol (19832.7086 without restraints) Performing minimization step: 84. Total energy = 19819.2272 kcal/mol (19788.0709 without restraints) Performing minimization step: 85. Total energy = 19774.8328 kcal/mol (19743.7240 without restraints) Performing minimization step: 86. Total energy = 19730.7241 kcal/mol (19699.6624 without restraints) Performing minimization step: 87. Total energy = 19686.8956 kcal/mol (19655.8801 without restraints) Performing minimization step: 88. Total energy = 19643.3413 kcal/mol (19612.3713 without restraints) Performing minimization step: 89. Total energy = 19600.0558 kcal/mol (19569.1312 without restraints) Performing minimization step: 90. Total energy = 19557.0347 kcal/mol (19526.1547 without restraints) Performing minimization step: 91. Total energy = 19514.2724 kcal/mol (19483.4368 without restraints) Performing minimization step: 92. Total energy = 19471.7647 kcal/mol (19440.9726 without restraints) Performing minimization step: 93. Total energy = 19429.5063 kcal/mol (19398.7573 without restraints) Performing minimization step: 94. Total energy = 19387.4928 kcal/mol (19356.7865 without restraints) Performing minimization step: 95. Total energy = 19345.7199 kcal/mol (19315.0559 without restraints) Performing minimization step: 96. Total energy = 19304.1832 kcal/mol (19273.5610 without restraints) Performing minimization step: 97. Total energy = 19262.8788 kcal/mol (19232.2980 without restraints) Performing minimization step: 98. Total energy = 19221.8025 kcal/mol (19191.2627 without restraints) Performing minimization step: 99. Total energy = 19180.9503 kcal/mol (19150.4513 without restraints) Performing minimization step: 100. Total energy = 19140.3192 kcal/mol (19109.8603 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 101. Total energy = 19099.9045 kcal/mol (19069.4853 without restraints) Performing minimization step: 102. Total energy = 19059.7032 kcal/mol (19029.3236 without restraints) Performing minimization step: 103. Total energy = 19019.7120 kcal/mol (18989.3715 without restraints) Performing minimization step: 104. Total energy = 18979.9269 kcal/mol (18949.6252 without restraints) Performing minimization step: 105. Total energy = 18940.3452 kcal/mol (18910.0820 without restraints) Performing minimization step: 106. Total energy = 18900.9637 kcal/mol (18870.7387 without restraints) Performing minimization step: 107. Total energy = 18861.7793 kcal/mol (18831.5920 without restraints) Performing minimization step: 108. Total energy = 18822.7886 kcal/mol (18792.6390 without restraints) Performing minimization step: 109. Total energy = 18783.9893 kcal/mol (18753.8769 without restraints) Performing minimization step: 110. Total energy = 18745.3782 kcal/mol (18715.3028 without restraints) Performing minimization step: 111. Total energy = 18706.9527 kcal/mol (18676.9142 without restraints) Performing minimization step: 112. Total energy = 18668.7104 kcal/mol (18638.7082 without restraints) Performing minimization step: 113. Total energy = 18630.6480 kcal/mol (18600.6820 without restraints) Performing minimization step: 114. Total energy = 18592.7627 kcal/mol (18562.8327 without restraints) Performing minimization step: 115. Total energy = 18555.0528 kcal/mol (18525.1585 without restraints) Performing minimization step: 116. Total energy = 18517.5161 kcal/mol (18487.6573 without restraints) Performing minimization step: 117. Total energy = 18480.1499 kcal/mol (18450.3262 without restraints) Performing minimization step: 118. Total energy = 18442.9518 kcal/mol (18413.1632 without restraints) Performing minimization step: 119. Total energy = 18405.9197 kcal/mol (18376.1659 without restraints) Performing minimization step: 120. Total energy = 18369.0512 kcal/mol (18339.3320 without restraints) Performing minimization step: 121. Total energy = 18332.3445 kcal/mol (18302.6597 without restraints) Performing minimization step: 122. Total energy = 18295.7974 kcal/mol (18266.1468 without restraints) Performing minimization step: 123. Total energy = 18259.4079 kcal/mol (18229.7912 without restraints) Performing minimization step: 124. Total energy = 18223.1741 kcal/mol (18193.5912 without restraints) Performing minimization step: 125. Total energy = 18187.0938 kcal/mol (18157.5445 without restraints) Performing minimization step: 126. Total energy = 18151.1654 kcal/mol (18121.6496 without restraints) Performing minimization step: 127. Total energy = 18115.3867 kcal/mol (18085.9041 without restraints) Performing minimization step: 128. Total energy = 18079.7564 kcal/mol (18050.3068 without restraints) Performing minimization step: 129. Total energy = 18044.2721 kcal/mol (18014.8555 without restraints) Performing minimization step: 130. Total energy = 18008.9330 kcal/mol (17979.5491 without restraints) Performing minimization step: 131. Total energy = 17973.7369 kcal/mol (17944.3856 without restraints) Performing minimization step: 132. Total energy = 17938.6822 kcal/mol (17909.3633 without restraints) Performing minimization step: 133. Total energy = 17903.7673 kcal/mol (17874.4807 without restraints) Performing minimization step: 134. Total energy = 17868.9906 kcal/mol (17839.7360 without restraints) Performing minimization step: 135. Total energy = 17834.3505 kcal/mol (17805.1281 without restraints) Performing minimization step: 136. Total energy = 17799.8457 kcal/mol (17770.6551 without restraints) Performing minimization step: 137. Total energy = 17765.4749 kcal/mol (17736.3160 without restraints) Performing minimization step: 138. Total energy = 17731.2364 kcal/mol (17702.1092 without restraints) Performing minimization step: 139. Total energy = 17697.1290 kcal/mol (17668.0332 without restraints) Performing minimization step: 140. Total energy = 17663.1514 kcal/mol (17634.0869 without restraints) Performing minimization step: 141. Total energy = 17629.3016 kcal/mol (17600.2684 without restraints) Performing minimization step: 142. Total energy = 17595.5794 kcal/mol (17566.5771 without restraints) Performing minimization step: 143. Total energy = 17561.9826 kcal/mol (17533.0113 without restraints) Performing minimization step: 144. Total energy = 17528.5100 kcal/mol (17499.5695 without restraints) Performing minimization step: 145. Total energy = 17495.1607 kcal/mol (17466.2509 without restraints) Performing minimization step: 146. Total energy = 17461.9334 kcal/mol (17433.0541 without restraints) Performing minimization step: 147. Total energy = 17428.8271 kcal/mol (17399.9785 without restraints) Performing minimization step: 148. Total energy = 17395.8404 kcal/mol (17367.0222 without restraints) Performing minimization step: 149. Total energy = 17362.9725 kcal/mol (17334.1846 without restraints) Performing minimization step: 150. Total energy = 17330.2219 kcal/mol (17301.4642 without restraints) Performing minimization step: 151. Total energy = 17297.5880 kcal/mol (17268.8603 without restraints) Performing minimization step: 152. Total energy = 17265.0692 kcal/mol (17236.3715 without restraints) Performing minimization step: 153. Total energy = 17232.6649 kcal/mol (17203.9972 without restraints) Performing minimization step: 154. Total energy = 17200.3741 kcal/mol (17171.7360 without restraints) Performing minimization step: 155. Total energy = 17168.1960 kcal/mol (17139.5877 without restraints) Performing minimization step: 156. Total energy = 17136.1286 kcal/mol (17107.5500 without restraints) Performing minimization step: 157. Total energy = 17104.1715 kcal/mol (17075.6224 without restraints) Performing minimization step: 158. Total energy = 17072.3239 kcal/mol (17043.8042 without restraints) Performing minimization step: 159. Total energy = 17040.5845 kcal/mol (17012.0942 without restraints) Performing minimization step: 160. Total energy = 17008.9528 kcal/mol (16980.4918 without restraints) Performing minimization step: 161. Total energy = 16977.4276 kcal/mol (16948.9957 without restraints) Performing minimization step: 162. Total energy = 16946.0087 kcal/mol (16917.6060 without restraints) Performing minimization step: 163. Total energy = 16914.6948 kcal/mol (16886.3211 without restraints) Performing minimization step: 164. Total energy = 16883.4844 kcal/mol (16855.1396 without restraints) Performing minimization step: 165. Total energy = 16852.3777 kcal/mol (16824.0618 without restraints) Performing minimization step: 166. Total energy = 16821.3734 kcal/mol (16793.0864 without restraints) Performing minimization step: 167. Total energy = 16790.4710 kcal/mol (16762.2127 without restraints) Performing minimization step: 168. Total energy = 16759.6691 kcal/mol (16731.4394 without restraints) Performing minimization step: 169. Total energy = 16728.9675 kcal/mol (16700.7664 without restraints) Performing minimization step: 170. Total energy = 16698.3652 kcal/mol (16670.1925 without restraints) Performing minimization step: 171. Total energy = 16667.8616 kcal/mol (16639.7174 without restraints) Performing minimization step: 172. Total energy = 16637.4558 kcal/mol (16609.3400 without restraints) Performing minimization step: 173. Total energy = 16607.1475 kcal/mol (16579.0600 without restraints) Performing minimization step: 174. Total energy = 16576.9355 kcal/mol (16548.8762 without restraints) Performing minimization step: 175. Total energy = 16546.8190 kcal/mol (16518.7879 without restraints) Performing minimization step: 176. Total energy = 16516.7982 kcal/mol (16488.7953 without restraints) Performing minimization step: 177. Total energy = 16486.8713 kcal/mol (16458.8964 without restraints) Performing minimization step: 178. Total energy = 16457.0381 kcal/mol (16429.0912 without restraints) Performing minimization step: 179. Total energy = 16427.2983 kcal/mol (16399.3794 without restraints) Performing minimization step: 180. Total energy = 16397.6514 kcal/mol (16369.7604 without restraints) Performing minimization step: 181. Total energy = 16368.0960 kcal/mol (16340.2328 without restraints) Performing minimization step: 182. Total energy = 16338.6315 kcal/mol (16310.7960 without restraints) Performing minimization step: 183. Total energy = 16309.2581 kcal/mol (16281.4504 without restraints) Performing minimization step: 184. Total energy = 16279.9746 kcal/mol (16252.1945 without restraints) Performing minimization step: 185. Total energy = 16250.7805 kcal/mol (16223.0280 without restraints) Performing minimization step: 186. Total energy = 16221.6751 kcal/mol (16193.9501 without restraints) Performing minimization step: 187. Total energy = 16192.6579 kcal/mol (16164.9604 without restraints) Performing minimization step: 188. Total energy = 16163.7286 kcal/mol (16136.0586 without restraints) Performing minimization step: 189. Total energy = 16134.8864 kcal/mol (16107.2438 without restraints) Performing minimization step: 190. Total energy = 16106.1314 kcal/mol (16078.5162 without restraints) Performing minimization step: 191. Total energy = 16077.4620 kcal/mol (16049.8740 without restraints) Performing minimization step: 192. Total energy = 16048.8785 kcal/mol (16021.3177 without restraints) Performing minimization step: 193. Total energy = 16020.3807 kcal/mol (15992.8464 without restraints) Performing minimization step: 194. Total energy = 15991.9658 kcal/mol (15964.4593 without restraints) Performing minimization step: 195. Total energy = 15963.6359 kcal/mol (15936.1566 without restraints) Performing minimization step: 196. Total energy = 15935.3895 kcal/mol (15907.9373 without restraints) Performing minimization step: 197. Total energy = 15907.2262 kcal/mol (15879.8010 without restraints) Performing minimization step: 198. Total energy = 15879.1453 kcal/mol (15851.7470 without restraints) Performing minimization step: 199. Total energy = 15851.1469 kcal/mol (15823.7755 without restraints) Performing minimization step: 200. Total energy = 15823.2302 kcal/mol (15795.8858 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 201. Total energy = 15795.3945 kcal/mol (15768.0767 without restraints) Performing minimization step: 202. Total energy = 15767.6394 kcal/mol (15740.3485 without restraints) Performing minimization step: 203. Total energy = 15739.9650 kcal/mol (15712.7007 without restraints) Performing minimization step: 204. Total energy = 15712.3699 kcal/mol (15685.1324 without restraints) Performing minimization step: 205. Total energy = 15684.8544 kcal/mol (15657.6436 without restraints) Performing minimization step: 206. Total energy = 15657.4180 kcal/mol (15630.2338 without restraints) Performing minimization step: 207. Total energy = 15630.0599 kcal/mol (15602.9023 without restraints) Performing minimization step: 208. Total energy = 15602.7803 kcal/mol (15575.6492 without restraints) Performing minimization step: 209. Total energy = 15575.5783 kcal/mol (15548.4737 without restraints) Performing minimization step: 210. Total energy = 15548.4537 kcal/mol (15521.3755 without restraints) Performing minimization step: 211. Total energy = 15521.4060 kcal/mol (15494.3543 without restraints) Performing minimization step: 212. Total energy = 15494.4345 kcal/mol (15467.4092 without restraints) Performing minimization step: 213. Total energy = 15467.5398 kcal/mol (15440.5408 without restraints) Performing minimization step: 214. Total energy = 15440.7204 kcal/mol (15413.7477 without restraints) Performing minimization step: 215. Total energy = 15413.9765 kcal/mol (15387.0301 without restraints) Performing minimization step: 216. Total energy = 15387.3078 kcal/mol (15360.3877 without restraints) Performing minimization step: 217. Total energy = 15360.7136 kcal/mol (15333.8196 without restraints) Performing minimization step: 218. Total energy = 15334.1937 kcal/mol (15307.3259 without restraints) Performing minimization step: 219. Total energy = 15307.7477 kcal/mol (15280.9058 without restraints) Performing minimization step: 220. Total energy = 15281.3749 kcal/mol (15254.5593 without restraints) Performing minimization step: 221. Total energy = 15255.0762 kcal/mol (15228.2864 without restraints) Performing minimization step: 222. Total energy = 15228.8496 kcal/mol (15202.0858 without restraints) Performing minimization step: 223. Total energy = 15202.6956 kcal/mol (15175.9580 without restraints) Performing minimization step: 224. Total energy = 15176.6140 kcal/mol (15149.9023 without restraints) Performing minimization step: 225. Total energy = 15150.6045 kcal/mol (15123.9187 without restraints) Performing minimization step: 226. Total energy = 15124.6660 kcal/mol (15098.0060 without restraints) Performing minimization step: 227. Total energy = 15098.7994 kcal/mol (15072.1653 without restraints) Performing minimization step: 228. Total energy = 15073.0031 kcal/mol (15046.3948 without restraints) Performing minimization step: 229. Total energy = 15047.2779 kcal/mol (15020.6954 without restraints) Performing minimization step: 230. Total energy = 15021.6222 kcal/mol (14995.0654 without restraints) Performing minimization step: 231. Total energy = 14996.0366 kcal/mol (14969.5054 without restraints) Performing minimization step: 232. Total energy = 14970.5207 kcal/mol (14944.0153 without restraints) Performing minimization step: 233. Total energy = 14945.0742 kcal/mol (14918.5944 without restraints) Performing minimization step: 234. Total energy = 14919.6969 kcal/mol (14893.2429 without restraints) Performing minimization step: 235. Total energy = 14894.3883 kcal/mol (14867.9597 without restraints) Performing minimization step: 236. Total energy = 14869.1481 kcal/mol (14842.7451 without restraints) Performing minimization step: 237. Total energy = 14843.9756 kcal/mol (14817.5981 without restraints) Performing minimization step: 238. Total energy = 14818.8714 kcal/mol (14792.5193 without restraints) Performing minimization step: 239. Total energy = 14793.8341 kcal/mol (14767.5075 without restraints) Performing minimization step: 240. Total energy = 14768.8648 kcal/mol (14742.5636 without restraints) Performing minimization step: 241. Total energy = 14743.9626 kcal/mol (14717.6867 without restraints) Performing minimization step: 242. Total energy = 14719.1269 kcal/mol (14692.8765 without restraints) Performing minimization step: 243. Total energy = 14694.3578 kcal/mol (14668.1327 without restraints) Performing minimization step: 244. Total energy = 14669.6550 kcal/mol (14643.4553 without restraints) Performing minimization step: 245. Total energy = 14645.0182 kcal/mol (14618.8438 without restraints) Performing minimization step: 246. Total energy = 14620.4472 kcal/mol (14594.2978 without restraints) Performing minimization step: 247. Total energy = 14595.9413 kcal/mol (14569.8171 without restraints) Performing minimization step: 248. Total energy = 14571.5005 kcal/mol (14545.4015 without restraints) Performing minimization step: 249. Total energy = 14547.1247 kcal/mol (14521.0509 without restraints) Performing minimization step: 250. Total energy = 14522.8136 kcal/mol (14496.7649 without restraints) Performing minimization step: 251. Total energy = 14498.5666 kcal/mol (14472.5430 without restraints) Performing minimization step: 252. Total energy = 14474.3841 kcal/mol (14448.3857 without restraints) Performing minimization step: 253. Total energy = 14450.2654 kcal/mol (14424.2919 without restraints) Performing minimization step: 254. Total energy = 14426.2106 kcal/mol (14400.2622 without restraints) Performing minimization step: 255. Total energy = 14402.2191 kcal/mol (14376.2956 without restraints) Performing minimization step: 256. Total energy = 14378.2911 kcal/mol (14352.3927 without restraints) Performing minimization step: 257. Total energy = 14354.4259 kcal/mol (14328.5523 without restraints) Performing minimization step: 258. Total energy = 14330.6232 kcal/mol (14304.7743 without restraints) Performing minimization step: 259. Total energy = 14306.8827 kcal/mol (14281.0588 without restraints) Performing minimization step: 260. Total energy = 14283.2049 kcal/mol (14257.4058 without restraints) Performing minimization step: 261. Total energy = 14259.5889 kcal/mol (14233.8147 without restraints) Performing minimization step: 262. Total energy = 14236.0347 kcal/mol (14210.2853 without restraints) Performing minimization step: 263. Total energy = 14212.5424 kcal/mol (14186.8177 without restraints) Performing minimization step: 264. Total energy = 14189.1115 kcal/mol (14163.4115 without restraints) Performing minimization step: 265. Total energy = 14165.7418 kcal/mol (14140.0665 without restraints) Performing minimization step: 266. Total energy = 14142.4326 kcal/mol (14116.7819 without restraints) Performing minimization step: 267. Total energy = 14119.1849 kcal/mol (14093.5589 without restraints) Performing minimization step: 268. Total energy = 14095.9971 kcal/mol (14070.3958 without restraints) Performing minimization step: 269. Total energy = 14072.8698 kcal/mol (14047.2930 without restraints) Performing minimization step: 270. Total energy = 14049.8026 kcal/mol (14024.2504 without restraints) Performing minimization step: 271. Total energy = 14026.7955 kcal/mol (14001.2678 without restraints) Performing minimization step: 272. Total energy = 14003.8480 kcal/mol (13978.3448 without restraints) Performing minimization step: 273. Total energy = 13980.9604 kcal/mol (13955.4817 without restraints) Performing minimization step: 274. Total energy = 13958.1320 kcal/mol (13932.6778 without restraints) Performing minimization step: 275. Total energy = 13935.3626 kcal/mol (13909.9327 without restraints) Performing minimization step: 276. Total energy = 13912.6520 kcal/mol (13887.2466 without restraints) Performing minimization step: 277. Total energy = 13890.0002 kcal/mol (13864.6192 without restraints) Performing minimization step: 278. Total energy = 13867.4070 kcal/mol (13842.0503 without restraints) Performing minimization step: 279. Total energy = 13844.8717 kcal/mol (13819.5392 without restraints) Performing minimization step: 280. Total energy = 13822.3945 kcal/mol (13797.0863 without restraints) Performing minimization step: 281. Total energy = 13799.9755 kcal/mol (13774.6917 without restraints) Performing minimization step: 282. Total energy = 13777.6145 kcal/mol (13752.3549 without restraints) Performing minimization step: 283. Total energy = 13755.3110 kcal/mol (13730.0756 without restraints) Performing minimization step: 284. Total energy = 13733.0651 kcal/mol (13707.8541 without restraints) Performing minimization step: 285. Total energy = 13710.8767 kcal/mol (13685.6897 without restraints) Performing minimization step: 286. Total energy = 13688.7449 kcal/mol (13663.5820 without restraints) Performing minimization step: 287. Total energy = 13666.6701 kcal/mol (13641.5313 without restraints) Performing minimization step: 288. Total energy = 13644.6520 kcal/mol (13619.5372 without restraints) Performing minimization step: 289. Total energy = 13622.6900 kcal/mol (13597.5994 without restraints) Performing minimization step: 290. Total energy = 13600.7849 kcal/mol (13575.7183 without restraints) Performing minimization step: 291. Total energy = 13578.9359 kcal/mol (13553.8933 without restraints) Performing minimization step: 292. Total energy = 13557.1428 kcal/mol (13532.1241 without restraints) Performing minimization step: 293. Total energy = 13535.4051 kcal/mol (13510.4103 without restraints) Performing minimization step: 294. Total energy = 13513.7230 kcal/mol (13488.7522 without restraints) Performing minimization step: 295. Total energy = 13492.0969 kcal/mol (13467.1501 without restraints) Performing minimization step: 296. Total energy = 13470.5262 kcal/mol (13445.6033 without restraints) Performing minimization step: 297. Total energy = 13449.0101 kcal/mol (13424.1110 without restraints) Performing minimization step: 298. Total energy = 13427.5493 kcal/mol (13402.6740 without restraints) Performing minimization step: 299. Total energy = 13406.1435 kcal/mol (13381.2920 without restraints) Performing minimization step: 300. Total energy = 13384.7917 kcal/mol (13359.9640 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 301. Total energy = 13363.4946 kcal/mol (13338.6905 without restraints) Performing minimization step: 302. Total energy = 13342.2521 kcal/mol (13317.4719 without restraints) Performing minimization step: 303. Total energy = 13321.0638 kcal/mol (13296.3072 without restraints) Performing minimization step: 304. Total energy = 13299.9296 kcal/mol (13275.1967 without restraints) Performing minimization step: 305. Total energy = 13278.8492 kcal/mol (13254.1401 without restraints) Performing minimization step: 306. Total energy = 13257.8228 kcal/mol (13233.1373 without restraints) Performing minimization step: 307. Total energy = 13236.8500 kcal/mol (13212.1879 without restraints) Performing minimization step: 308. Total energy = 13215.9302 kcal/mol (13191.2917 without restraints) Performing minimization step: 309. Total energy = 13195.0636 kcal/mol (13170.4487 without restraints) Performing minimization step: 310. Total energy = 13174.2496 kcal/mol (13149.6581 without restraints) Performing minimization step: 311. Total energy = 13153.4890 kcal/mol (13128.9210 without restraints) Performing minimization step: 312. Total energy = 13132.7814 kcal/mol (13108.2369 without restraints) Performing minimization step: 313. Total energy = 13112.1264 kcal/mol (13087.6052 without restraints) Performing minimization step: 314. Total energy = 13091.5239 kcal/mol (13067.0262 without restraints) Performing minimization step: 315. Total energy = 13070.9735 kcal/mol (13046.4991 without restraints) Performing minimization step: 316. Total energy = 13050.4752 kcal/mol (13026.0242 without restraints) Performing minimization step: 317. Total energy = 13030.0290 kcal/mol (13005.6013 without restraints) Performing minimization step: 318. Total energy = 13009.6349 kcal/mol (12985.2306 without restraints) Performing minimization step: 319. Total energy = 12989.2931 kcal/mol (12964.9122 without restraints) Performing minimization step: 320. Total energy = 12969.0025 kcal/mol (12944.6448 without restraints) Performing minimization step: 321. Total energy = 12948.7632 kcal/mol (12924.4286 without restraints) Performing minimization step: 322. Total energy = 12928.5754 kcal/mol (12904.2641 without restraints) Performing minimization step: 323. Total energy = 12908.4395 kcal/mol (12884.1515 without restraints) Performing minimization step: 324. Total energy = 12888.3539 kcal/mol (12864.0890 without restraints) Performing minimization step: 325. Total energy = 12868.3193 kcal/mol (12844.0775 without restraints) Performing minimization step: 326. Total energy = 12848.3357 kcal/mol (12824.1170 without restraints) Performing minimization step: 327. Total energy = 12828.4026 kcal/mol (12804.2070 without restraints) Performing minimization step: 328. Total energy = 12808.5196 kcal/mol (12784.3471 without restraints) Performing minimization step: 329. Total energy = 12788.6871 kcal/mol (12764.5375 without restraints) Performing minimization step: 330. Total energy = 12768.9052 kcal/mol (12744.7786 without restraints) Performing minimization step: 331. Total energy = 12749.1732 kcal/mol (12725.0696 without restraints) Performing minimization step: 332. Total energy = 12729.4912 kcal/mol (12705.4106 without restraints) Performing minimization step: 333. Total energy = 12709.8586 kcal/mol (12685.8009 without restraints) Performing minimization step: 334. Total energy = 12690.2767 kcal/mol (12666.2420 without restraints) Performing minimization step: 335. Total energy = 12670.7444 kcal/mol (12646.7324 without restraints) Performing minimization step: 336. Total energy = 12651.2609 kcal/mol (12627.2718 without restraints) Performing minimization step: 337. Total energy = 12631.8266 kcal/mol (12607.8602 without restraints) Performing minimization step: 338. Total energy = 12612.4412 kcal/mol (12588.4976 without restraints) Performing minimization step: 339. Total energy = 12593.1050 kcal/mol (12569.1843 without restraints) Performing minimization step: 340. Total energy = 12573.8180 kcal/mol (12549.9200 without restraints) Performing minimization step: 341. Total energy = 12554.5798 kcal/mol (12530.7045 without restraints) Performing minimization step: 342. Total energy = 12535.3901 kcal/mol (12511.5375 without restraints) Performing minimization step: 343. Total energy = 12516.2490 kcal/mol (12492.4191 without restraints) Performing minimization step: 344. Total energy = 12497.1566 kcal/mol (12473.3493 without restraints) Performing minimization step: 345. Total energy = 12478.1123 kcal/mol (12454.3276 without restraints) Performing minimization step: 346. Total energy = 12459.1162 kcal/mol (12435.3541 without restraints) Performing minimization step: 347. Total energy = 12440.1680 kcal/mol (12416.4284 without restraints) Performing minimization step: 348. Total energy = 12421.2680 kcal/mol (12397.5510 without restraints) Performing minimization step: 349. Total energy = 12402.4156 kcal/mol (12378.7211 without restraints) Performing minimization step: 350. Total energy = 12383.6111 kcal/mol (12359.9390 without restraints) Performing minimization step: 351. Total energy = 12364.8547 kcal/mol (12341.2052 without restraints) Performing minimization step: 352. Total energy = 12346.1452 kcal/mol (12322.5181 without restraints) Performing minimization step: 353. Total energy = 12327.4831 kcal/mol (12303.8783 without restraints) Performing minimization step: 354. Total energy = 12308.8678 kcal/mol (12285.2853 without restraints) Performing minimization step: 355. Total energy = 12290.2997 kcal/mol (12266.7397 without restraints) Performing minimization step: 356. Total energy = 12271.7788 kcal/mol (12248.2409 without restraints) Performing minimization step: 357. Total energy = 12253.3046 kcal/mol (12229.7891 without restraints) Performing minimization step: 358. Total energy = 12234.8772 kcal/mol (12211.3841 without restraints) Performing minimization step: 359. Total energy = 12216.4964 kcal/mol (12193.0254 without restraints) Performing minimization step: 360. Total energy = 12198.1617 kcal/mol (12174.7130 without restraints) Performing minimization step: 361. Total energy = 12179.8739 kcal/mol (12156.4473 without restraints) Performing minimization step: 362. Total energy = 12161.6323 kcal/mol (12138.2279 without restraints) Performing minimization step: 363. Total energy = 12143.4368 kcal/mol (12120.0546 without restraints) Performing minimization step: 364. Total energy = 12125.2872 kcal/mol (12101.9271 without restraints) Performing minimization step: 365. Total energy = 12107.1840 kcal/mol (12083.8460 without restraints) Performing minimization step: 366. Total energy = 12089.1263 kcal/mol (12065.8103 without restraints) Performing minimization step: 367. Total energy = 12071.1143 kcal/mol (12047.8203 without restraints) Performing minimization step: 368. Total energy = 12053.1482 kcal/mol (12029.8763 without restraints) Performing minimization step: 369. Total energy = 12035.2271 kcal/mol (12011.9771 without restraints) Performing minimization step: 370. Total energy = 12017.3517 kcal/mol (11994.1236 without restraints) Performing minimization step: 371. Total energy = 11999.5213 kcal/mol (11976.3151 without restraints) Performing minimization step: 372. Total energy = 11981.7364 kcal/mol (11958.5520 without restraints) Performing minimization step: 373. Total energy = 11963.9957 kcal/mol (11940.8332 without restraints) Performing minimization step: 374. Total energy = 11946.3006 kcal/mol (11923.1601 without restraints) Performing minimization step: 375. Total energy = 11928.6498 kcal/mol (11905.5311 without restraints) Performing minimization step: 376. Total energy = 11911.0447 kcal/mol (11887.9477 without restraints) Performing minimization step: 377. Total energy = 11893.4834 kcal/mol (11870.4082 without restraints) Performing minimization step: 378. Total energy = 11875.9665 kcal/mol (11852.9129 without restraints) Performing minimization step: 379. Total energy = 11858.4938 kcal/mol (11835.4620 without restraints) Performing minimization step: 380. Total energy = 11841.0653 kcal/mol (11818.0552 without restraints) Performing minimization step: 381. Total energy = 11823.6810 kcal/mol (11800.6925 without restraints) Performing minimization step: 382. Total energy = 11806.3410 kcal/mol (11783.3741 without restraints) Performing minimization step: 383. Total energy = 11789.0449 kcal/mol (11766.0997 without restraints) Performing minimization step: 384. Total energy = 11771.7928 kcal/mol (11748.8691 without restraints) Performing minimization step: 385. Total energy = 11754.5840 kcal/mol (11731.6818 without restraints) Performing minimization step: 386. Total energy = 11737.4192 kcal/mol (11714.5385 without restraints) Performing minimization step: 387. Total energy = 11720.2979 kcal/mol (11697.4388 without restraints) Performing minimization step: 388. Total energy = 11703.2201 kcal/mol (11680.3824 without restraints) Performing minimization step: 389. Total energy = 11686.1854 kcal/mol (11663.3691 without restraints) Performing minimization step: 390. Total energy = 11669.1941 kcal/mol (11646.3993 without restraints) Performing minimization step: 391. Total energy = 11652.2462 kcal/mol (11629.4728 without restraints) Performing minimization step: 392. Total energy = 11635.3405 kcal/mol (11612.5882 without restraints) Performing minimization step: 393. Total energy = 11618.4777 kcal/mol (11595.7469 without restraints) Performing minimization step: 394. Total energy = 11601.6580 kcal/mol (11578.9484 without restraints) Performing minimization step: 395. Total energy = 11584.8809 kcal/mol (11562.1926 without restraints) Performing minimization step: 396. Total energy = 11568.1463 kcal/mol (11545.4792 without restraints) Performing minimization step: 397. Total energy = 11551.4539 kcal/mol (11528.8080 without restraints) Performing minimization step: 398. Total energy = 11534.8043 kcal/mol (11512.1797 without restraints) Performing minimization step: 399. Total energy = 11518.1972 kcal/mol (11495.5938 without restraints) Performing minimization step: 400. Total energy = 11501.6315 kcal/mol (11479.0490 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 401. Total energy = 11485.1080 kcal/mol (11462.5468 without restraints) Performing minimization step: 402. Total energy = 11468.6266 kcal/mol (11446.0864 without restraints) Performing minimization step: 403. Total energy = 11452.1879 kcal/mol (11429.6686 without restraints) Performing minimization step: 404. Total energy = 11435.7900 kcal/mol (11413.2918 without restraints) Performing minimization step: 405. Total energy = 11419.4341 kcal/mol (11396.9567 without restraints) Performing minimization step: 406. Total energy = 11403.1194 kcal/mol (11380.6631 without restraints) Performing minimization step: 407. Total energy = 11386.8460 kcal/mol (11364.4105 without restraints) Performing minimization step: 408. Total energy = 11370.6139 kcal/mol (11348.1994 without restraints) Performing minimization step: 409. Total energy = 11354.4232 kcal/mol (11332.0295 without restraints) Performing minimization step: 410. Total energy = 11338.2733 kcal/mol (11315.9003 without restraints) Performing minimization step: 411. Total energy = 11322.1644 kcal/mol (11299.8124 without restraints) Performing minimization step: 412. Total energy = 11306.0970 kcal/mol (11283.7658 without restraints) Performing minimization step: 413. Total energy = 11290.0702 kcal/mol (11267.7597 without restraints) Performing minimization step: 414. Total energy = 11274.0843 kcal/mol (11251.7945 without restraints) Performing minimization step: 415. Total energy = 11258.1389 kcal/mol (11235.8698 without restraints) Performing minimization step: 416. Total energy = 11242.2343 kcal/mol (11219.9859 without restraints) Performing minimization step: 417. Total energy = 11226.3700 kcal/mol (11204.1422 without restraints) Performing minimization step: 418. Total energy = 11210.5461 kcal/mol (11188.3387 without restraints) Performing minimization step: 419. Total energy = 11194.7624 kcal/mol (11172.5758 without restraints) Performing minimization step: 420. Total energy = 11179.0186 kcal/mol (11156.8525 without restraints) Performing minimization step: 421. Total energy = 11163.3149 kcal/mol (11141.1693 without restraints) Performing minimization step: 422. Total energy = 11147.6517 kcal/mol (11125.5267 without restraints) Performing minimization step: 423. Total energy = 11132.0281 kcal/mol (11109.9235 without restraints) Performing minimization step: 424. Total energy = 11116.4440 kcal/mol (11094.3600 without restraints) Performing minimization step: 425. Total energy = 11100.9000 kcal/mol (11078.8362 without restraints) Performing minimization step: 426. Total energy = 11085.3953 kcal/mol (11063.3519 without restraints) Performing minimization step: 427. Total energy = 11069.9296 kcal/mol (11047.9065 without restraints) Performing minimization step: 428. Total energy = 11054.5041 kcal/mol (11032.5014 without restraints) Performing minimization step: 429. Total energy = 11039.1174 kcal/mol (11017.1349 without restraints) Performing minimization step: 430. Total energy = 11023.7697 kcal/mol (11001.8075 without restraints) Performing minimization step: 431. Total energy = 11008.4609 kcal/mol (10986.5189 without restraints) Performing minimization step: 432. Total energy = 10993.1911 kcal/mol (10971.2690 without restraints) Performing minimization step: 433. Total energy = 10977.9600 kcal/mol (10956.0583 without restraints) Performing minimization step: 434. Total energy = 10962.7682 kcal/mol (10940.8867 without restraints) Performing minimization step: 435. Total energy = 10947.6150 kcal/mol (10925.7536 without restraints) Performing minimization step: 436. Total energy = 10932.5004 kcal/mol (10910.6590 without restraints) Performing minimization step: 437. Total energy = 10917.4240 kcal/mol (10895.6027 without restraints) Performing minimization step: 438. Total energy = 10902.3862 kcal/mol (10880.5849 without restraints) Performing minimization step: 439. Total energy = 10887.3868 kcal/mol (10865.6055 without restraints) Performing minimization step: 440. Total energy = 10872.4258 kcal/mol (10850.6645 without restraints) Performing minimization step: 441. Total energy = 10857.5029 kcal/mol (10835.7615 without restraints) Performing minimization step: 442. Total energy = 10842.6180 kcal/mol (10820.8965 without restraints) Performing minimization step: 443. Total energy = 10827.7709 kcal/mol (10806.0692 without restraints) Performing minimization step: 444. Total energy = 10812.9617 kcal/mol (10791.2799 without restraints) Performing minimization step: 445. Total energy = 10798.1901 kcal/mol (10776.5281 without restraints) Performing minimization step: 446. Total energy = 10783.4562 kcal/mol (10761.8140 without restraints) Performing minimization step: 447. Total energy = 10768.7595 kcal/mol (10747.1370 without restraints) Performing minimization step: 448. Total energy = 10754.1006 kcal/mol (10732.4978 without restraints) Performing minimization step: 449. Total energy = 10739.4792 kcal/mol (10717.8961 without restraints) Performing minimization step: 450. Total energy = 10724.8951 kcal/mol (10703.3316 without restraints) Performing minimization step: 451. Total energy = 10710.3481 kcal/mol (10688.8043 without restraints) Performing minimization step: 452. Total energy = 10695.8382 kcal/mol (10674.3139 without restraints) Performing minimization step: 453. Total energy = 10681.3653 kcal/mol (10659.8606 without restraints) Performing minimization step: 454. Total energy = 10666.9295 kcal/mol (10645.4443 without restraints) Performing minimization step: 455. Total energy = 10652.5302 kcal/mol (10631.0645 without restraints) Performing minimization step: 456. Total energy = 10638.1676 kcal/mol (10616.7214 without restraints) Performing minimization step: 457. Total energy = 10623.8418 kcal/mol (10602.4150 without restraints) Performing minimization step: 458. Total energy = 10609.5528 kcal/mol (10588.1455 without restraints) Performing minimization step: 459. Total energy = 10595.2999 kcal/mol (10573.9119 without restraints) Performing minimization step: 460. Total energy = 10581.0830 kcal/mol (10559.7142 without restraints) Performing minimization step: 461. Total energy = 10566.9023 kcal/mol (10545.5530 without restraints) Performing minimization step: 462. Total energy = 10552.7584 kcal/mol (10531.4284 without restraints) Performing minimization step: 463. Total energy = 10538.6502 kcal/mol (10517.3393 without restraints) Performing minimization step: 464. Total energy = 10524.5780 kcal/mol (10503.2864 without restraints) Performing minimization step: 465. Total energy = 10510.5418 kcal/mol (10489.2694 without restraints) Performing minimization step: 466. Total energy = 10496.5413 kcal/mol (10475.2881 without restraints) Performing minimization step: 467. Total energy = 10482.5766 kcal/mol (10461.3426 without restraints) Performing minimization step: 468. Total energy = 10468.6475 kcal/mol (10447.4326 without restraints) Performing minimization step: 469. Total energy = 10454.7538 kcal/mol (10433.5579 without restraints) Performing minimization step: 470. Total energy = 10440.8952 kcal/mol (10419.7183 without restraints) Performing minimization step: 471. Total energy = 10427.0723 kcal/mol (10405.9145 without restraints) Performing minimization step: 472. Total energy = 10413.2845 kcal/mol (10392.1457 without restraints) Performing minimization step: 473. Total energy = 10399.5318 kcal/mol (10378.4118 without restraints) Performing minimization step: 474. Total energy = 10385.8143 kcal/mol (10364.7133 without restraints) Performing minimization step: 475. Total energy = 10372.1320 kcal/mol (10351.0499 without restraints) Performing minimization step: 476. Total energy = 10358.4848 kcal/mol (10337.4215 without restraints) Performing minimization step: 477. Total energy = 10344.8720 kcal/mol (10323.8276 without restraints) Performing minimization step: 478. Total energy = 10331.2941 kcal/mol (10310.2684 without restraints) Performing minimization step: 479. Total energy = 10317.7506 kcal/mol (10296.7436 without restraints) Performing minimization step: 480. Total energy = 10304.2416 kcal/mol (10283.2535 without restraints) Performing minimization step: 481. Total energy = 10290.7672 kcal/mol (10269.7978 without restraints) Performing minimization step: 482. Total energy = 10277.3274 kcal/mol (10256.3768 without restraints) Performing minimization step: 483. Total energy = 10263.9218 kcal/mol (10242.9894 without restraints) Performing minimization step: 484. Total energy = 10250.5493 kcal/mol (10229.6356 without restraints) Performing minimization step: 485. Total energy = 10237.2118 kcal/mol (10216.3170 without restraints) Performing minimization step: 486. Total energy = 10223.9087 kcal/mol (10203.0322 without restraints) Performing minimization step: 487. Total energy = 10210.6392 kcal/mol (10189.7813 without restraints) Performing minimization step: 488. Total energy = 10197.4037 kcal/mol (10176.5643 without restraints) Performing minimization step: 489. Total energy = 10184.2017 kcal/mol (10163.3808 without restraints) Performing minimization step: 490. Total energy = 10171.0329 kcal/mol (10150.2305 without restraints) Performing minimization step: 491. Total energy = 10157.8981 kcal/mol (10137.1139 without restraints) Performing minimization step: 492. Total energy = 10144.7963 kcal/mol (10124.0304 without restraints) Performing minimization step: 493. Total energy = 10131.7284 kcal/mol (10110.9809 without restraints) Performing minimization step: 494. Total energy = 10118.6935 kcal/mol (10097.9642 without restraints) Performing minimization step: 495. Total energy = 10105.6919 kcal/mol (10084.9810 without restraints) Performing minimization step: 496. Total energy = 10092.7233 kcal/mol (10072.0305 without restraints) Performing minimization step: 497. Total energy = 10079.7876 kcal/mol (10059.1130 without restraints) Performing minimization step: 498. Total energy = 10066.8851 kcal/mol (10046.2287 without restraints) Performing minimization step: 499. Total energy = 10054.0149 kcal/mol (10033.3766 without restraints) Performing minimization step: 500. Total energy = 10041.1777 kcal/mol (10020.5575 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 501. Total energy = 10028.3730 kcal/mol (10007.7710 without restraints) Performing minimization step: 502. Total energy = 10015.6010 kcal/mol (9995.0169 without restraints) Performing minimization step: 503. Total energy = 10002.8614 kcal/mol (9982.2953 without restraints) Performing minimization step: 504. Total energy = 9990.1543 kcal/mol (9969.6062 without restraints) Performing minimization step: 505. Total energy = 9977.4794 kcal/mol (9956.9490 without restraints) Performing minimization step: 506. Total energy = 9964.8366 kcal/mol (9944.3242 without restraints) Performing minimization step: 507. Total energy = 9952.2260 kcal/mol (9931.7316 without restraints) Performing minimization step: 508. Total energy = 9939.6473 kcal/mol (9919.1707 without restraints) Performing minimization step: 509. Total energy = 9927.1006 kcal/mol (9906.6417 without restraints) Performing minimization step: 510. Total energy = 9914.5857 kcal/mol (9894.1447 without restraints) Performing minimization step: 511. Total energy = 9902.1030 kcal/mol (9881.6799 without restraints) Performing minimization step: 512. Total energy = 9889.6522 kcal/mol (9869.2466 without restraints) Performing minimization step: 513. Total energy = 9877.2323 kcal/mol (9856.8444 without restraints) Performing minimization step: 514. Total energy = 9864.8441 kcal/mol (9844.4739 without restraints) Performing minimization step: 515. Total energy = 9852.4869 kcal/mol (9832.1343 without restraints) Performing minimization step: 516. Total energy = 9840.1616 kcal/mol (9819.8265 without restraints) Performing minimization step: 517. Total energy = 9827.8671 kcal/mol (9807.5496 without restraints) Performing minimization step: 518. Total energy = 9815.6041 kcal/mol (9795.3041 without restraints) Performing minimization step: 519. Total energy = 9803.3716 kcal/mol (9783.0892 without restraints) Performing minimization step: 520. Total energy = 9791.1706 kcal/mol (9770.9057 without restraints) Performing minimization step: 521. Total energy = 9779.0002 kcal/mol (9758.7526 without restraints) Performing minimization step: 522. Total energy = 9766.8604 kcal/mol (9746.6301 without restraints) Performing minimization step: 523. Total energy = 9754.7516 kcal/mol (9734.5388 without restraints) Performing minimization step: 524. Total energy = 9742.6732 kcal/mol (9722.4776 without restraints) Performing minimization step: 525. Total energy = 9730.6250 kcal/mol (9710.4468 without restraints) Performing minimization step: 526. Total energy = 9718.6077 kcal/mol (9698.4467 without restraints) Performing minimization step: 527. Total energy = 9706.6207 kcal/mol (9686.4769 without restraints) Performing minimization step: 528. Total energy = 9694.6638 kcal/mol (9674.5372 without restraints) Performing minimization step: 529. Total energy = 9682.7372 kcal/mol (9662.6278 without restraints) Performing minimization step: 530. Total energy = 9670.8406 kcal/mol (9650.7484 without restraints) Performing minimization step: 531. Total energy = 9658.9742 kcal/mol (9638.8989 without restraints) Performing minimization step: 532. Total energy = 9647.1373 kcal/mol (9627.0792 without restraints) Performing minimization step: 533. Total energy = 9635.3307 kcal/mol (9615.2897 without restraints) Performing minimization step: 534. Total energy = 9623.5536 kcal/mol (9603.5295 without restraints) Performing minimization step: 535. Total energy = 9611.8064 kcal/mol (9591.7995 without restraints) Performing minimization step: 536. Total energy = 9600.0889 kcal/mol (9580.0987 without restraints) Performing minimization step: 537. Total energy = 9588.4005 kcal/mol (9568.4272 without restraints) Performing minimization step: 538. Total energy = 9576.7413 kcal/mol (9556.7848 without restraints) Performing minimization step: 539. Total energy = 9565.1120 kcal/mol (9545.1724 without restraints) Performing minimization step: 540. Total energy = 9553.5116 kcal/mol (9533.5889 without restraints) Performing minimization step: 541. Total energy = 9541.9405 kcal/mol (9522.0346 without restraints) Performing minimization step: 542. Total energy = 9530.3982 kcal/mol (9510.5090 without restraints) Performing minimization step: 543. Total energy = 9518.8852 kcal/mol (9499.0127 without restraints) Performing minimization step: 544. Total energy = 9507.4009 kcal/mol (9487.5451 without restraints) Performing minimization step: 545. Total energy = 9495.9454 kcal/mol (9476.1062 without restraints) Performing minimization step: 546. Total energy = 9484.5183 kcal/mol (9464.6958 without restraints) Performing minimization step: 547. Total energy = 9473.1199 kcal/mol (9453.3139 without restraints) Performing minimization step: 548. Total energy = 9461.7500 kcal/mol (9441.9607 without restraints) Performing minimization step: 549. Total energy = 9450.4092 kcal/mol (9430.6362 without restraints) Performing minimization step: 550. Total energy = 9439.0961 kcal/mol (9419.3397 without restraints) Performing minimization step: 551. Total energy = 9427.8113 kcal/mol (9408.0713 without restraints) Performing minimization step: 552. Total energy = 9416.5549 kcal/mol (9396.8313 without restraints) Performing minimization step: 553. Total energy = 9405.3266 kcal/mol (9385.6194 without restraints) Performing minimization step: 554. Total energy = 9394.1262 kcal/mol (9374.4354 without restraints) Performing minimization step: 555. Total energy = 9382.9541 kcal/mol (9363.2796 without restraints) Performing minimization step: 556. Total energy = 9371.8093 kcal/mol (9352.1511 without restraints) Performing minimization step: 557. Total energy = 9360.6924 kcal/mol (9341.0506 without restraints) Performing minimization step: 558. Total energy = 9349.6034 kcal/mol (9329.9777 without restraints) Performing minimization step: 559. Total energy = 9338.5417 kcal/mol (9318.9322 without restraints) Performing minimization step: 560. Total energy = 9327.5077 kcal/mol (9307.9143 without restraints) Performing minimization step: 561. Total energy = 9316.5012 kcal/mol (9296.9239 without restraints) Performing minimization step: 562. Total energy = 9305.5224 kcal/mol (9285.9613 without restraints) Performing minimization step: 563. Total energy = 9294.5705 kcal/mol (9275.0255 without restraints) Performing minimization step: 564. Total energy = 9283.6453 kcal/mol (9264.1163 without restraints) Performing minimization step: 565. Total energy = 9272.7474 kcal/mol (9253.2344 without restraints) Performing minimization step: 566. Total energy = 9261.8765 kcal/mol (9242.3795 without restraints) Performing minimization step: 567. Total energy = 9251.0324 kcal/mol (9231.5512 without restraints) Performing minimization step: 568. Total energy = 9240.2152 kcal/mol (9220.7497 without restraints) Performing minimization step: 569. Total energy = 9229.4249 kcal/mol (9209.9756 without restraints) Performing minimization step: 570. Total energy = 9218.6612 kcal/mol (9199.2277 without restraints) Performing minimization step: 571. Total energy = 9207.9240 kcal/mol (9188.5062 without restraints) Performing minimization step: 572. Total energy = 9197.2133 kcal/mol (9177.8113 without restraints) Performing minimization step: 573. Total energy = 9186.5288 kcal/mol (9167.1426 without restraints) Performing minimization step: 574. Total energy = 9175.8708 kcal/mol (9156.5003 without restraints) Performing minimization step: 575. Total energy = 9165.2396 kcal/mol (9145.8848 without restraints) Performing minimization step: 576. Total energy = 9154.6340 kcal/mol (9135.2949 without restraints) Performing minimization step: 577. Total energy = 9144.0544 kcal/mol (9124.7309 without restraints) Performing minimization step: 578. Total energy = 9133.5011 kcal/mol (9114.1931 without restraints) Performing minimization step: 579. Total energy = 9122.9737 kcal/mol (9103.6813 without restraints) Performing minimization step: 580. Total energy = 9112.4719 kcal/mol (9093.1948 without restraints) Performing minimization step: 581. Total energy = 9101.9958 kcal/mol (9082.7345 without restraints) Performing minimization step: 582. Total energy = 9091.5457 kcal/mol (9072.2997 without restraints) Performing minimization step: 583. Total energy = 9081.1213 kcal/mol (9061.8908 without restraints) Performing minimization step: 584. Total energy = 9070.7222 kcal/mol (9051.5070 without restraints) Performing minimization step: 585. Total energy = 9060.3483 kcal/mol (9041.1485 without restraints) Performing minimization step: 586. Total energy = 9049.9994 kcal/mol (9030.8150 without restraints) Performing minimization step: 587. Total energy = 9039.6766 kcal/mol (9020.5075 without restraints) Performing minimization step: 588. Total energy = 9029.3787 kcal/mol (9010.2248 without restraints) Performing minimization step: 589. Total energy = 9019.1061 kcal/mol (8999.9675 without restraints) Performing minimization step: 590. Total energy = 9008.8576 kcal/mol (8989.7342 without restraints) Performing minimization step: 591. Total energy = 8998.6349 kcal/mol (8979.5267 without restraints) Performing minimization step: 592. Total energy = 8988.4371 kcal/mol (8969.3440 without restraints) Performing minimization step: 593. Total energy = 8978.2636 kcal/mol (8959.1858 without restraints) Performing minimization step: 594. Total energy = 8968.1150 kcal/mol (8949.0521 without restraints) Performing minimization step: 595. Total energy = 8957.9910 kcal/mol (8938.9431 without restraints) Performing minimization step: 596. Total energy = 8947.8912 kcal/mol (8928.8584 without restraints) Performing minimization step: 597. Total energy = 8937.8162 kcal/mol (8918.7985 without restraints) Performing minimization step: 598. Total energy = 8927.7656 kcal/mol (8908.7627 without restraints) Performing minimization step: 599. Total energy = 8917.7392 kcal/mol (8898.7514 without restraints) Performing minimization step: 600. Total energy = 8907.7370 kcal/mol (8888.7638 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 601. Total energy = 8897.7585 kcal/mol (8878.8003 without restraints) Performing minimization step: 602. Total energy = 8887.8043 kcal/mol (8868.8610 without restraints) Performing minimization step: 603. Total energy = 8877.8743 kcal/mol (8858.9458 without restraints) Performing minimization step: 604. Total energy = 8867.9680 kcal/mol (8849.0542 without restraints) Performing minimization step: 605. Total energy = 8858.0852 kcal/mol (8839.1861 without restraints) Performing minimization step: 606. Total energy = 8848.2262 kcal/mol (8829.3419 without restraints) Performing minimization step: 607. Total energy = 8838.3912 kcal/mol (8819.5215 without restraints) Performing minimization step: 608. Total energy = 8828.5795 kcal/mol (8809.7245 without restraints) Performing minimization step: 609. Total energy = 8818.7914 kcal/mol (8799.9509 without restraints) Performing minimization step: 610. Total energy = 8809.0264 kcal/mol (8790.2006 without restraints) Performing minimization step: 611. Total energy = 8799.2853 kcal/mol (8780.4740 without restraints) Performing minimization step: 612. Total energy = 8789.5671 kcal/mol (8770.7705 without restraints) Performing minimization step: 613. Total energy = 8779.8719 kcal/mol (8761.0896 without restraints) Performing minimization step: 614. Total energy = 8770.1994 kcal/mol (8751.4316 without restraints) Performing minimization step: 615. Total energy = 8760.5503 kcal/mol (8741.7969 without restraints) Performing minimization step: 616. Total energy = 8750.9241 kcal/mol (8732.1852 without restraints) Performing minimization step: 617. Total energy = 8741.3207 kcal/mol (8722.5961 without restraints) Performing minimization step: 618. Total energy = 8731.7402 kcal/mol (8713.0300 without restraints) Performing minimization step: 619. Total energy = 8722.1823 kcal/mol (8703.4864 without restraints) Performing minimization step: 620. Total energy = 8712.6469 kcal/mol (8693.9653 without restraints) Performing minimization step: 621. Total energy = 8703.1343 kcal/mol (8684.4669 without restraints) Performing minimization step: 622. Total energy = 8693.6443 kcal/mol (8674.9910 without restraints) Performing minimization step: 623. Total energy = 8684.1759 kcal/mol (8665.5369 without restraints) Performing minimization step: 624. Total energy = 8674.7306 kcal/mol (8656.1058 without restraints) Performing minimization step: 625. Total energy = 8665.3077 kcal/mol (8646.6970 without restraints) Performing minimization step: 626. Total energy = 8655.9056 kcal/mol (8637.3088 without restraints) Performing minimization step: 627. Total energy = 8646.5260 kcal/mol (8627.9434 without restraints) Performing minimization step: 628. Total energy = 8637.1693 kcal/mol (8618.6008 without restraints) Performing minimization step: 629. Total energy = 8627.8341 kcal/mol (8609.2797 without restraints) Performing minimization step: 630. Total energy = 8618.5201 kcal/mol (8599.9796 without restraints) Performing minimization step: 631. Total energy = 8609.2282 kcal/mol (8590.7017 without restraints) Performing minimization step: 632. Total energy = 8599.9574 kcal/mol (8581.4448 without restraints) Performing minimization step: 633. Total energy = 8590.7092 kcal/mol (8572.2105 without restraints) Performing minimization step: 634. Total energy = 8581.4819 kcal/mol (8562.9970 without restraints) Performing minimization step: 635. Total energy = 8572.2761 kcal/mol (8553.8050 without restraints) Performing minimization step: 636. Total energy = 8563.0916 kcal/mol (8544.6344 without restraints) Performing minimization step: 637. Total energy = 8553.9287 kcal/mol (8535.4853 without restraints) Performing minimization step: 638. Total energy = 8544.7869 kcal/mol (8526.3572 without restraints) Performing minimization step: 639. Total energy = 8535.6658 kcal/mol (8517.2498 without restraints) Performing minimization step: 640. Total energy = 8526.5661 kcal/mol (8508.1638 without restraints) Performing minimization step: 641. Total energy = 8517.4874 kcal/mol (8499.0987 without restraints) Performing minimization step: 642. Total energy = 8508.4294 kcal/mol (8490.0544 without restraints) Performing minimization step: 643. Total energy = 8499.3921 kcal/mol (8481.0307 without restraints) Performing minimization step: 644. Total energy = 8490.3757 kcal/mol (8472.0279 without restraints) Performing minimization step: 645. Total energy = 8481.3804 kcal/mol (8463.0464 without restraints) Performing minimization step: 646. Total energy = 8472.4057 kcal/mol (8454.0850 without restraints) Performing minimization step: 647. Total energy = 8463.4511 kcal/mol (8445.1439 without restraints) Performing minimization step: 648. Total energy = 8454.5176 kcal/mol (8436.2238 without restraints) Performing minimization step: 649. Total energy = 8445.6041 kcal/mol (8427.3237 without restraints) Performing minimization step: 650. Total energy = 8436.7109 kcal/mol (8418.4439 without restraints) Performing minimization step: 651. Total energy = 8427.8379 kcal/mol (8409.5844 without restraints) Performing minimization step: 652. Total energy = 8418.9852 kcal/mol (8400.7450 without restraints) Performing minimization step: 653. Total energy = 8410.1533 kcal/mol (8391.9264 without restraints) Performing minimization step: 654. Total energy = 8401.3406 kcal/mol (8383.1270 without restraints) Performing minimization step: 655. Total energy = 8392.5483 kcal/mol (8374.3479 without restraints) Performing minimization step: 656. Total energy = 8383.7759 kcal/mol (8365.5890 without restraints) Performing minimization step: 657. Total energy = 8375.0234 kcal/mol (8356.8495 without restraints) Performing minimization step: 658. Total energy = 8366.2903 kcal/mol (8348.1296 without restraints) Performing minimization step: 659. Total energy = 8357.5765 kcal/mol (8339.4290 without restraints) Performing minimization step: 660. Total energy = 8348.8823 kcal/mol (8330.7480 without restraints) Performing minimization step: 661. Total energy = 8340.2082 kcal/mol (8322.0870 without restraints) Performing minimization step: 662. Total energy = 8331.5540 kcal/mol (8313.4458 without restraints) Performing minimization step: 663. Total energy = 8322.9182 kcal/mol (8304.8231 without restraints) Performing minimization step: 664. Total energy = 8314.3021 kcal/mol (8296.2200 without restraints) Performing minimization step: 665. Total energy = 8305.7050 kcal/mol (8287.6359 without restraints) Performing minimization step: 666. Total energy = 8297.1271 kcal/mol (8279.0710 without restraints) Performing minimization step: 667. Total energy = 8288.5685 kcal/mol (8270.5253 without restraints) Performing minimization step: 668. Total energy = 8280.0286 kcal/mol (8261.9983 without restraints) Performing minimization step: 669. Total energy = 8271.5082 kcal/mol (8253.4907 without restraints) Performing minimization step: 670. Total energy = 8263.0064 kcal/mol (8245.0018 without restraints) Performing minimization step: 671. Total energy = 8254.5234 kcal/mol (8236.5315 without restraints) Performing minimization step: 672. Total energy = 8246.0593 kcal/mol (8228.0804 without restraints) Performing minimization step: 673. Total energy = 8237.6139 kcal/mol (8219.6477 without restraints) Performing minimization step: 674. Total energy = 8229.1874 kcal/mol (8211.2340 without restraints) Performing minimization step: 675. Total energy = 8220.7787 kcal/mol (8202.8380 without restraints) Performing minimization step: 676. Total energy = 8212.3888 kcal/mol (8194.4608 without restraints) Performing minimization step: 677. Total energy = 8204.0175 kcal/mol (8186.1022 without restraints) Performing minimization step: 678. Total energy = 8195.6645 kcal/mol (8177.7621 without restraints) Performing minimization step: 679. Total energy = 8187.3299 kcal/mol (8169.4399 without restraints) Performing minimization step: 680. Total energy = 8179.0133 kcal/mol (8161.1360 without restraints) Performing minimization step: 681. Total energy = 8170.7150 kcal/mol (8152.8502 without restraints) Performing minimization step: 682. Total energy = 8162.4350 kcal/mol (8144.5828 without restraints) Performing minimization step: 683. Total energy = 8154.1728 kcal/mol (8136.3331 without restraints) Performing minimization step: 684. Total energy = 8145.9286 kcal/mol (8128.1014 without restraints) Performing minimization step: 685. Total energy = 8137.7019 kcal/mol (8119.8872 without restraints) Performing minimization step: 686. Total energy = 8129.4931 kcal/mol (8111.6909 without restraints) Performing minimization step: 687. Total energy = 8121.3022 kcal/mol (8103.5123 without restraints) Performing minimization step: 688. Total energy = 8113.1292 kcal/mol (8095.3517 without restraints) Performing minimization step: 689. Total energy = 8104.9732 kcal/mol (8087.2082 without restraints) Performing minimization step: 690. Total energy = 8096.8352 kcal/mol (8079.0825 without restraints) Performing minimization step: 691. Total energy = 8088.7148 kcal/mol (8070.9744 without restraints) Performing minimization step: 692. Total energy = 8080.6116 kcal/mol (8062.8834 without restraints) Performing minimization step: 693. Total energy = 8072.5255 kcal/mol (8054.8095 without restraints) Performing minimization step: 694. Total energy = 8064.4568 kcal/mol (8046.7533 without restraints) Performing minimization step: 695. Total energy = 8056.4051 kcal/mol (8038.7137 without restraints) Performing minimization step: 696. Total energy = 8048.3710 kcal/mol (8030.6919 without restraints) Performing minimization step: 697. Total energy = 8040.3542 kcal/mol (8022.6873 without restraints) Performing minimization step: 698. Total energy = 8032.3544 kcal/mol (8014.6997 without restraints) Performing minimization step: 699. Total energy = 8024.3715 kcal/mol (8006.7289 without restraints) Performing minimization step: 700. Total energy = 8016.4054 kcal/mol (7998.7747 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 701. Total energy = 8008.4560 kcal/mol (7990.8374 without restraints) Performing minimization step: 702. Total energy = 8000.5235 kcal/mol (7982.9172 without restraints) Performing minimization step: 703. Total energy = 7992.6085 kcal/mol (7975.0141 without restraints) Performing minimization step: 704. Total energy = 7984.7094 kcal/mol (7967.1271 without restraints) Performing minimization step: 705. Total energy = 7976.8276 kcal/mol (7959.2572 without restraints) Performing minimization step: 706. Total energy = 7968.9615 kcal/mol (7951.4032 without restraints) Performing minimization step: 707. Total energy = 7961.1122 kcal/mol (7943.5657 without restraints) Performing minimization step: 708. Total energy = 7953.2795 kcal/mol (7935.7450 without restraints) Performing minimization step: 709. Total energy = 7945.4628 kcal/mol (7927.9402 without restraints) Performing minimization step: 710. Total energy = 7937.6626 kcal/mol (7920.1519 without restraints) Performing minimization step: 711. Total energy = 7929.8784 kcal/mol (7912.3795 without restraints) Performing minimization step: 712. Total energy = 7922.1108 kcal/mol (7904.6238 without restraints) Performing minimization step: 713. Total energy = 7914.3592 kcal/mol (7896.8841 without restraints) Performing minimization step: 714. Total energy = 7906.6236 kcal/mol (7889.1602 without restraints) Performing minimization step: 715. Total energy = 7898.9043 kcal/mol (7881.4526 without restraints) Performing minimization step: 716. Total energy = 7891.2007 kcal/mol (7873.7608 without restraints) Performing minimization step: 717. Total energy = 7883.5123 kcal/mol (7866.0841 without restraints) Performing minimization step: 718. Total energy = 7875.8402 kcal/mol (7858.4236 without restraints) Performing minimization step: 719. Total energy = 7868.1839 kcal/mol (7850.7791 without restraints) Performing minimization step: 720. Total energy = 7860.5434 kcal/mol (7843.1502 without restraints) Performing minimization step: 721. Total energy = 7852.9185 kcal/mol (7835.5370 without restraints) Performing minimization step: 722. Total energy = 7845.3094 kcal/mol (7827.9396 without restraints) Performing minimization step: 723. Total energy = 7837.7154 kcal/mol (7820.3572 without restraints) Performing minimization step: 724. Total energy = 7830.1369 kcal/mol (7812.7902 without restraints) Performing minimization step: 725. Total energy = 7822.5738 kcal/mol (7805.2387 without restraints) Performing minimization step: 726. Total energy = 7815.0264 kcal/mol (7797.7028 without restraints) Performing minimization step: 727. Total energy = 7807.4939 kcal/mol (7790.1817 without restraints) Performing minimization step: 728. Total energy = 7799.9773 kcal/mol (7782.6766 without restraints) Performing minimization step: 729. Total energy = 7792.4756 kcal/mol (7775.1864 without restraints) Performing minimization step: 730. Total energy = 7784.9892 kcal/mol (7767.7115 without restraints) Performing minimization step: 731. Total energy = 7777.5179 kcal/mol (7760.2516 without restraints) Performing minimization step: 732. Total energy = 7770.0611 kcal/mol (7752.8061 without restraints) Performing minimization step: 733. Total energy = 7762.6195 kcal/mol (7745.3760 without restraints) Performing minimization step: 734. Total energy = 7755.1927 kcal/mol (7737.9606 without restraints) Performing minimization step: 735. Total energy = 7747.7813 kcal/mol (7730.5605 without restraints) Performing minimization step: 736. Total energy = 7740.3839 kcal/mol (7723.1744 without restraints) Performing minimization step: 737. Total energy = 7733.0019 kcal/mol (7715.8038 without restraints) Performing minimization step: 738. Total energy = 7725.6351 kcal/mol (7708.4482 without restraints) Performing minimization step: 739. Total energy = 7718.2824 kcal/mol (7701.1070 without restraints) Performing minimization step: 740. Total energy = 7710.9444 kcal/mol (7693.7800 without restraints) Performing minimization step: 741. Total energy = 7703.6208 kcal/mol (7686.4677 without restraints) Performing minimization step: 742. Total energy = 7696.3115 kcal/mol (7679.1696 without restraints) Performing minimization step: 743. Total energy = 7689.0168 kcal/mol (7671.8862 without restraints) Performing minimization step: 744. Total energy = 7681.7365 kcal/mol (7664.6170 without restraints) Performing minimization step: 745. Total energy = 7674.4704 kcal/mol (7657.3619 without restraints) Performing minimization step: 746. Total energy = 7667.2186 kcal/mol (7650.1212 without restraints) Performing minimization step: 747. Total energy = 7659.9810 kcal/mol (7642.8948 without restraints) Performing minimization step: 748. Total energy = 7652.7578 kcal/mol (7635.6827 without restraints) Performing minimization step: 749. Total energy = 7645.5486 kcal/mol (7628.4846 without restraints) Performing minimization step: 750. Total energy = 7638.3534 kcal/mol (7621.3005 without restraints) Performing minimization step: 751. Total energy = 7631.1723 kcal/mol (7614.1303 without restraints) Performing minimization step: 752. Total energy = 7624.0049 kcal/mol (7606.9740 without restraints) Performing minimization step: 753. Total energy = 7616.8514 kcal/mol (7599.8315 without restraints) Performing minimization step: 754. Total energy = 7609.7117 kcal/mol (7592.7027 without restraints) Performing minimization step: 755. Total energy = 7602.5861 kcal/mol (7585.5881 without restraints) Performing minimization step: 756. Total energy = 7595.4740 kcal/mol (7578.4870 without restraints) Performing minimization step: 757. Total energy = 7588.3760 kcal/mol (7571.3999 without restraints) Performing minimization step: 758. Total energy = 7581.2911 kcal/mol (7564.3258 without restraints) Performing minimization step: 759. Total energy = 7574.2201 kcal/mol (7557.2657 without restraints) Performing minimization step: 760. Total energy = 7567.1638 kcal/mol (7550.2206 without restraints) Performing minimization step: 761. Total energy = 7560.1201 kcal/mol (7543.1876 without restraints) Performing minimization step: 762. Total energy = 7553.0900 kcal/mol (7536.1682 without restraints) Performing minimization step: 763. Total energy = 7546.0735 kcal/mol (7529.1626 without restraints) Performing minimization step: 764. Total energy = 7539.0698 kcal/mol (7522.1697 without restraints) Performing minimization step: 765. Total energy = 7532.0793 kcal/mol (7515.1899 without restraints) Performing minimization step: 766. Total energy = 7525.1025 kcal/mol (7508.2239 without restraints) Performing minimization step: 767. Total energy = 7518.1388 kcal/mol (7501.2710 without restraints) Performing minimization step: 768. Total energy = 7511.1877 kcal/mol (7494.3305 without restraints) Performing minimization step: 769. Total energy = 7504.2498 kcal/mol (7487.4035 without restraints) Performing minimization step: 770. Total energy = 7497.3252 kcal/mol (7480.4895 without restraints) Performing minimization step: 771. Total energy = 7490.4143 kcal/mol (7473.5893 without restraints) Performing minimization step: 772. Total energy = 7483.5167 kcal/mol (7466.7024 without restraints) Performing minimization step: 773. Total energy = 7476.6313 kcal/mol (7459.8275 without restraints) Performing minimization step: 774. Total energy = 7469.7585 kcal/mol (7452.9655 without restraints) Performing minimization step: 775. Total energy = 7462.8992 kcal/mol (7446.1168 without restraints) Performing minimization step: 776. Total energy = 7456.0526 kcal/mol (7439.2807 without restraints) Performing minimization step: 777. Total energy = 7449.2185 kcal/mol (7432.4573 without restraints) Performing minimization step: 778. Total energy = 7442.3971 kcal/mol (7425.6465 without restraints) Performing minimization step: 779. Total energy = 7435.5883 kcal/mol (7418.8481 without restraints) Performing minimization step: 780. Total energy = 7428.7922 kcal/mol (7412.0626 without restraints) Performing minimization step: 781. Total energy = 7422.0088 kcal/mol (7405.2898 without restraints) Performing minimization step: 782. Total energy = 7415.2379 kcal/mol (7398.5293 without restraints) Performing minimization step: 783. Total energy = 7408.4793 kcal/mol (7391.7813 without restraints) Performing minimization step: 784. Total energy = 7401.7335 kcal/mol (7385.0460 without restraints) Performing minimization step: 785. Total energy = 7395.0001 kcal/mol (7378.3232 without restraints) Performing minimization step: 786. Total energy = 7388.2792 kcal/mol (7371.6125 without restraints) Performing minimization step: 787. Total energy = 7381.5707 kcal/mol (7364.9145 without restraints) Performing minimization step: 788. Total energy = 7374.8744 kcal/mol (7358.2286 without restraints) Performing minimization step: 789. Total energy = 7368.1903 kcal/mol (7351.5550 without restraints) Performing minimization step: 790. Total energy = 7361.5179 kcal/mol (7344.8929 without restraints) Performing minimization step: 791. Total energy = 7354.8578 kcal/mol (7338.2432 without restraints) Performing minimization step: 792. Total energy = 7348.2099 kcal/mol (7331.6057 without restraints) Performing minimization step: 793. Total energy = 7341.5743 kcal/mol (7324.9804 without restraints) Performing minimization step: 794. Total energy = 7334.9507 kcal/mol (7318.3671 without restraints) Performing minimization step: 795. Total energy = 7328.3392 kcal/mol (7311.7659 without restraints) Performing minimization step: 796. Total energy = 7321.7395 kcal/mol (7305.1765 without restraints) Performing minimization step: 797. Total energy = 7315.1517 kcal/mol (7298.5992 without restraints) Performing minimization step: 798. Total energy = 7308.5759 kcal/mol (7292.0335 without restraints) Performing minimization step: 799. Total energy = 7302.0120 kcal/mol (7285.4799 without restraints) Performing minimization step: 800. Total energy = 7295.4594 kcal/mol (7278.9375 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 801. Total energy = 7288.9187 kcal/mol (7272.4070 without restraints) Performing minimization step: 802. Total energy = 7282.3899 kcal/mol (7265.8885 without restraints) Performing minimization step: 803. Total energy = 7275.8726 kcal/mol (7259.3813 without restraints) Performing minimization step: 804. Total energy = 7269.3672 kcal/mol (7252.8863 without restraints) Performing minimization step: 805. Total energy = 7262.8737 kcal/mol (7246.4027 without restraints) Performing minimization step: 806. Total energy = 7256.3910 kcal/mol (7239.9302 without restraints) Performing minimization step: 807. Total energy = 7249.9196 kcal/mol (7233.4688 without restraints) Performing minimization step: 808. Total energy = 7243.4599 kcal/mol (7227.0194 without restraints) Performing minimization step: 809. Total energy = 7237.0121 kcal/mol (7220.5818 without restraints) Performing minimization step: 810. Total energy = 7230.5752 kcal/mol (7214.1550 without restraints) Performing minimization step: 811. Total energy = 7224.1498 kcal/mol (7207.7397 without restraints) Performing minimization step: 812. Total energy = 7217.7360 kcal/mol (7201.3360 without restraints) Performing minimization step: 813. Total energy = 7211.3335 kcal/mol (7194.9435 without restraints) Performing minimization step: 814. Total energy = 7204.9420 kcal/mol (7188.5621 without restraints) Performing minimization step: 815. Total energy = 7198.5617 kcal/mol (7182.1918 without restraints) Performing minimization step: 816. Total energy = 7192.1926 kcal/mol (7175.8327 without restraints) Performing minimization step: 817. Total energy = 7185.8348 kcal/mol (7169.4850 without restraints) Performing minimization step: 818. Total energy = 7179.4879 kcal/mol (7163.1482 without restraints) Performing minimization step: 819. Total energy = 7173.1518 kcal/mol (7156.8219 without restraints) Performing minimization step: 820. Total energy = 7166.8265 kcal/mol (7150.5066 without restraints) Performing minimization step: 821. Total energy = 7160.5127 kcal/mol (7144.2027 without restraints) Performing minimization step: 822. Total energy = 7154.2097 kcal/mol (7137.9098 without restraints) Performing minimization step: 823. Total energy = 7147.9175 kcal/mol (7131.6275 without restraints) Performing minimization step: 824. Total energy = 7141.6364 kcal/mol (7125.3563 without restraints) Performing minimization step: 825. Total energy = 7135.3663 kcal/mol (7119.0961 without restraints) Performing minimization step: 826. Total energy = 7129.1066 kcal/mol (7112.8464 without restraints) Performing minimization step: 827. Total energy = 7122.8579 kcal/mol (7106.6076 without restraints) Performing minimization step: 828. Total energy = 7116.6198 kcal/mol (7100.3794 without restraints) Performing minimization step: 829. Total energy = 7110.3924 kcal/mol (7094.1619 without restraints) Performing minimization step: 830. Total energy = 7104.1755 kcal/mol (7087.9547 without restraints) Performing minimization step: 831. Total energy = 7097.9688 kcal/mol (7081.7579 without restraints) Performing minimization step: 832. Total energy = 7091.7729 kcal/mol (7075.5719 without restraints) Performing minimization step: 833. Total energy = 7085.5881 kcal/mol (7069.3969 without restraints) Performing minimization step: 834. Total energy = 7079.4137 kcal/mol (7063.2323 without restraints) Performing minimization step: 835. Total energy = 7073.2500 kcal/mol (7057.0784 without restraints) Performing minimization step: 836. Total energy = 7067.0964 kcal/mol (7050.9347 without restraints) Performing minimization step: 837. Total energy = 7060.9533 kcal/mol (7044.8014 without restraints) Performing minimization step: 838. Total energy = 7054.8205 kcal/mol (7038.6783 without restraints) Performing minimization step: 839. Total energy = 7048.6981 kcal/mol (7032.5655 without restraints) Performing minimization step: 840. Total energy = 7042.5860 kcal/mol (7026.4633 without restraints) Performing minimization step: 841. Total energy = 7036.4840 kcal/mol (7020.3710 without restraints) Performing minimization step: 842. Total energy = 7030.3925 kcal/mol (7014.2892 without restraints) Performing minimization step: 843. Total energy = 7024.3111 kcal/mol (7008.2176 without restraints) Performing minimization step: 844. Total energy = 7018.2404 kcal/mol (7002.1565 without restraints) Performing minimization step: 845. Total energy = 7012.1793 kcal/mol (6996.1053 without restraints) Performing minimization step: 846. Total energy = 7006.1291 kcal/mol (6990.0647 without restraints) Performing minimization step: 847. Total energy = 7000.0883 kcal/mol (6984.0336 without restraints) Performing minimization step: 848. Total energy = 6994.0580 kcal/mol (6978.0129 without restraints) Performing minimization step: 849. Total energy = 6988.0374 kcal/mol (6972.0021 without restraints) Performing minimization step: 850. Total energy = 6982.0272 kcal/mol (6966.0015 without restraints) Performing minimization step: 851. Total energy = 6976.0266 kcal/mol (6960.0107 without restraints) Performing minimization step: 852. Total energy = 6970.0364 kcal/mol (6954.0300 without restraints) Performing minimization step: 853. Total energy = 6964.0558 kcal/mol (6948.0591 without restraints) Performing minimization step: 854. Total energy = 6958.0848 kcal/mol (6942.0976 without restraints) Performing minimization step: 855. Total energy = 6952.1239 kcal/mol (6936.1463 without restraints) Performing minimization step: 856. Total energy = 6946.1725 kcal/mol (6930.2044 without restraints) Performing minimization step: 857. Total energy = 6940.2310 kcal/mol (6924.2725 without restraints) Performing minimization step: 858. Total energy = 6934.2999 kcal/mol (6918.3510 without restraints) Performing minimization step: 859. Total energy = 6928.3778 kcal/mol (6912.4384 without restraints) Performing minimization step: 860. Total energy = 6922.4655 kcal/mol (6906.5357 without restraints) Performing minimization step: 861. Total energy = 6916.5629 kcal/mol (6900.6426 without restraints) Performing minimization step: 862. Total energy = 6910.6697 kcal/mol (6894.7590 without restraints) Performing minimization step: 863. Total energy = 6904.7860 kcal/mol (6888.8848 without restraints) Performing minimization step: 864. Total energy = 6898.9125 kcal/mol (6883.0209 without restraints) Performing minimization step: 865. Total energy = 6893.0484 kcal/mol (6877.1661 without restraints) Performing minimization step: 866. Total energy = 6887.1931 kcal/mol (6871.3203 without restraints) Performing minimization step: 867. Total energy = 6881.3476 kcal/mol (6865.4844 without restraints) Performing minimization step: 868. Total energy = 6875.5124 kcal/mol (6859.6586 without restraints) Performing minimization step: 869. Total energy = 6869.6859 kcal/mol (6853.8418 without restraints) Performing minimization step: 870. Total energy = 6863.8692 kcal/mol (6848.0344 without restraints) Performing minimization step: 871. Total energy = 6858.0614 kcal/mol (6842.2360 without restraints) Performing minimization step: 872. Total energy = 6852.2626 kcal/mol (6836.4466 without restraints) Performing minimization step: 873. Total energy = 6846.4734 kcal/mol (6830.6669 without restraints) Performing minimization step: 874. Total energy = 6840.6934 kcal/mol (6824.8963 without restraints) Performing minimization step: 875. Total energy = 6834.9227 kcal/mol (6819.1350 without restraints) Performing minimization step: 876. Total energy = 6829.1614 kcal/mol (6813.3833 without restraints) Performing minimization step: 877. Total energy = 6823.4096 kcal/mol (6807.6408 without restraints) Performing minimization step: 878. Total energy = 6817.6668 kcal/mol (6801.9073 without restraints) Performing minimization step: 879. Total energy = 6811.9333 kcal/mol (6796.1832 without restraints) Performing minimization step: 880. Total energy = 6806.2085 kcal/mol (6790.4678 without restraints) Performing minimization step: 881. Total energy = 6800.4928 kcal/mol (6784.7615 without restraints) Performing minimization step: 882. Total energy = 6794.7861 kcal/mol (6779.0641 without restraints) Performing minimization step: 883. Total energy = 6789.0883 kcal/mol (6773.3757 without restraints) Performing minimization step: 884. Total energy = 6783.4001 kcal/mol (6767.6967 without restraints) Performing minimization step: 885. Total energy = 6777.7207 kcal/mol (6762.0267 without restraints) Performing minimization step: 886. Total energy = 6772.0505 kcal/mol (6756.3658 without restraints) Performing minimization step: 887. Total energy = 6766.3889 kcal/mol (6750.7136 without restraints) Performing minimization step: 888. Total energy = 6760.7364 kcal/mol (6745.0704 without restraints) Performing minimization step: 889. Total energy = 6755.0927 kcal/mol (6739.4360 without restraints) Performing minimization step: 890. Total energy = 6749.4582 kcal/mol (6733.8109 without restraints) Performing minimization step: 891. Total energy = 6743.8322 kcal/mol (6728.1941 without restraints) Performing minimization step: 892. Total energy = 6738.2152 kcal/mol (6722.5863 without restraints) Performing minimization step: 893. Total energy = 6732.6067 kcal/mol (6716.9871 without restraints) Performing minimization step: 894. Total energy = 6727.0073 kcal/mol (6711.3970 without restraints) Performing minimization step: 895. Total energy = 6721.4164 kcal/mol (6705.8151 without restraints) Performing minimization step: 896. Total energy = 6715.8342 kcal/mol (6700.2423 without restraints) Performing minimization step: 897. Total energy = 6710.2609 kcal/mol (6694.6783 without restraints) Performing minimization step: 898. Total energy = 6704.6961 kcal/mol (6689.1229 without restraints) Performing minimization step: 899. Total energy = 6699.1400 kcal/mol (6683.5759 without restraints) Performing minimization step: 900. Total energy = 6693.5922 kcal/mol (6678.0373 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 901. Total energy = 6688.0531 kcal/mol (6672.5074 without restraints) Performing minimization step: 902. Total energy = 6682.5224 kcal/mol (6666.9859 without restraints) Performing minimization step: 903. Total energy = 6677.0003 kcal/mol (6661.4730 without restraints) Performing minimization step: 904. Total energy = 6671.4870 kcal/mol (6655.9689 without restraints) Performing minimization step: 905. Total energy = 6665.9822 kcal/mol (6650.4732 without restraints) Performing minimization step: 906. Total energy = 6660.4857 kcal/mol (6644.9859 without restraints) Performing minimization step: 907. Total energy = 6654.9979 kcal/mol (6639.5073 without restraints) Performing minimization step: 908. Total energy = 6649.5184 kcal/mol (6634.0369 without restraints) Performing minimization step: 909. Total energy = 6644.0470 kcal/mol (6628.5746 without restraints) Performing minimization step: 910. Total energy = 6638.5843 kcal/mol (6623.1211 without restraints) Performing minimization step: 911. Total energy = 6633.1300 kcal/mol (6617.6760 without restraints) Performing minimization step: 912. Total energy = 6627.6839 kcal/mol (6612.2391 without restraints) Performing minimization step: 913. Total energy = 6622.2463 kcal/mol (6606.8105 without restraints) Performing minimization step: 914. Total energy = 6616.8169 kcal/mol (6601.3903 without restraints) Performing minimization step: 915. Total energy = 6611.3958 kcal/mol (6595.9784 without restraints) Performing minimization step: 916. Total energy = 6605.9830 kcal/mol (6590.5746 without restraints) Performing minimization step: 917. Total energy = 6600.5782 kcal/mol (6585.1789 without restraints) Performing minimization step: 918. Total energy = 6595.1816 kcal/mol (6579.7915 without restraints) Performing minimization step: 919. Total energy = 6589.7932 kcal/mol (6574.4120 without restraints) Performing minimization step: 920. Total energy = 6584.4126 kcal/mol (6569.0405 without restraints) Performing minimization step: 921. Total energy = 6579.0406 kcal/mol (6563.6776 without restraints) Performing minimization step: 922. Total energy = 6573.6765 kcal/mol (6558.3226 without restraints) Performing minimization step: 923. Total energy = 6568.3205 kcal/mol (6552.9757 without restraints) Performing minimization step: 924. Total energy = 6562.9725 kcal/mol (6547.6367 without restraints) Performing minimization step: 925. Total energy = 6557.6324 kcal/mol (6542.3057 without restraints) Performing minimization step: 926. Total energy = 6552.3002 kcal/mol (6536.9824 without restraints) Performing minimization step: 927. Total energy = 6546.9762 kcal/mol (6531.6675 without restraints) Performing minimization step: 928. Total energy = 6541.7110 kcal/mol (6526.3601 without restraints) Performing minimization step: 929. Total energy = 6536.3517 kcal/mol (6521.0611 without restraints) Performing minimization step: 930. Total energy = 6531.0516 kcal/mol (6515.7700 without restraints) Performing minimization step: 931. Total energy = 6525.7595 kcal/mol (6510.4869 without restraints) Performing minimization step: 932. Total energy = 6520.4752 kcal/mol (6505.2116 without restraints) Performing minimization step: 933. Total energy = 6515.1988 kcal/mol (6499.9443 without restraints) Performing minimization step: 934. Total energy = 6509.9304 kcal/mol (6494.6848 without restraints) Performing minimization step: 935. Total energy = 6504.6694 kcal/mol (6489.4328 without restraints) Performing minimization step: 936. Total energy = 6499.4167 kcal/mol (6484.1891 without restraints) Performing minimization step: 937. Total energy = 6494.1710 kcal/mol (6478.9522 without restraints) Performing minimization step: 938. Total energy = 6488.9333 kcal/mol (6473.7235 without restraints) Performing minimization step: 939. Total energy = 6483.7036 kcal/mol (6468.5030 without restraints) Performing minimization step: 940. Total energy = 6478.4816 kcal/mol (6463.2899 without restraints) Performing minimization step: 941. Total energy = 6473.2674 kcal/mol (6458.0846 without restraints) Performing minimization step: 942. Total energy = 6468.0607 kcal/mol (6452.8869 without restraints) Performing minimization step: 943. Total energy = 6462.8619 kcal/mol (6447.6970 without restraints) Performing minimization step: 944. Total energy = 6457.6706 kcal/mol (6442.5146 without restraints) Performing minimization step: 945. Total energy = 6452.4872 kcal/mol (6437.3401 without restraints) Performing minimization step: 946. Total energy = 6447.3110 kcal/mol (6432.1729 without restraints) Performing minimization step: 947. Total energy = 6442.1435 kcal/mol (6427.0143 without restraints) Performing minimization step: 948. Total energy = 6436.9827 kcal/mol (6421.8624 without restraints) Performing minimization step: 949. Total energy = 6431.8296 kcal/mol (6416.7183 without restraints) Performing minimization step: 950. Total energy = 6426.6837 kcal/mol (6411.5812 without restraints) Performing minimization step: 951. Total energy = 6421.5457 kcal/mol (6406.4521 without restraints) Performing minimization step: 952. Total energy = 6416.4151 kcal/mol (6401.3303 without restraints) Performing minimization step: 953. Total energy = 6411.2926 kcal/mol (6396.2168 without restraints) Performing minimization step: 954. Total energy = 6406.1769 kcal/mol (6391.1101 without restraints) Performing minimization step: 955. Total energy = 6401.0691 kcal/mol (6386.0111 without restraints) Performing minimization step: 956. Total energy = 6395.9681 kcal/mol (6380.9188 without restraints) Performing minimization step: 957. Total energy = 6390.8743 kcal/mol (6375.8340 without restraints) Performing minimization step: 958. Total energy = 6385.7879 kcal/mol (6370.7565 without restraints) Performing minimization step: 959. Total energy = 6380.7091 kcal/mol (6365.6865 without restraints) Performing minimization step: 960. Total energy = 6375.6379 kcal/mol (6360.6242 without restraints) Performing minimization step: 961. Total energy = 6370.5739 kcal/mol (6355.5689 without restraints) Performing minimization step: 962. Total energy = 6365.5172 kcal/mol (6350.5211 without restraints) Performing minimization step: 963. Total energy = 6360.4678 kcal/mol (6345.4806 without restraints) Performing minimization step: 964. Total energy = 6355.4257 kcal/mol (6340.4473 without restraints) Performing minimization step: 965. Total energy = 6350.3907 kcal/mol (6335.4211 without restraints) Performing minimization step: 966. Total energy = 6345.3629 kcal/mol (6330.4021 without restraints) Performing minimization step: 967. Total energy = 6340.3425 kcal/mol (6325.3906 without restraints) Performing minimization step: 968. Total energy = 6335.3293 kcal/mol (6320.3861 without restraints) Performing minimization step: 969. Total energy = 6330.3233 kcal/mol (6315.3889 without restraints) Performing minimization step: 970. Total energy = 6325.3242 kcal/mol (6310.3987 without restraints) Performing minimization step: 971. Total energy = 6320.3327 kcal/mol (6305.4160 without restraints) Performing minimization step: 972. Total energy = 6315.3480 kcal/mol (6300.4402 without restraints) Performing minimization step: 973. Total energy = 6310.3705 kcal/mol (6295.4713 without restraints) Performing minimization step: 974. Total energy = 6305.4002 kcal/mol (6290.5099 without restraints) Performing minimization step: 975. Total energy = 6300.4368 kcal/mol (6285.5552 without restraints) Performing minimization step: 976. Total energy = 6295.4805 kcal/mol (6280.6077 without restraints) Performing minimization step: 977. Total energy = 6290.5315 kcal/mol (6275.6675 without restraints) Performing minimization step: 978. Total energy = 6285.5893 kcal/mol (6270.7340 without restraints) Performing minimization step: 979. Total energy = 6280.6539 kcal/mol (6265.8074 without restraints) Performing minimization step: 980. Total energy = 6275.7255 kcal/mol (6260.8877 without restraints) Performing minimization step: 981. Total energy = 6270.8041 kcal/mol (6255.9749 without restraints) Performing minimization step: 982. Total energy = 6265.8896 kcal/mol (6251.0693 without restraints) Performing minimization step: 983. Total energy = 6260.9824 kcal/mol (6246.1710 without restraints) Performing minimization step: 984. Total energy = 6256.0820 kcal/mol (6241.2794 without restraints) Performing minimization step: 985. Total energy = 6251.1889 kcal/mol (6236.3948 without restraints) Performing minimization step: 986. Total energy = 6246.3026 kcal/mol (6231.5172 without restraints) Performing minimization step: 987. Total energy = 6241.4229 kcal/mol (6226.6463 without restraints) Performing minimization step: 988. Total energy = 6236.5507 kcal/mol (6221.7828 without restraints) Performing minimization step: 989. Total energy = 6231.6849 kcal/mol (6216.9256 without restraints) Performing minimization step: 990. Total energy = 6226.8256 kcal/mol (6212.0750 without restraints) Performing minimization step: 991. Total energy = 6221.9738 kcal/mol (6207.2319 without restraints) Performing minimization step: 992. Total energy = 6217.1283 kcal/mol (6202.3954 without restraints) Performing minimization step: 993. Total energy = 6212.2898 kcal/mol (6197.5654 without restraints) Performing minimization step: 994. Total energy = 6207.4579 kcal/mol (6192.7422 without restraints) Performing minimization step: 995. Total energy = 6202.6327 kcal/mol (6187.9256 without restraints) Performing minimization step: 996. Total energy = 6197.8140 kcal/mol (6183.1156 without restraints) Performing minimization step: 997. Total energy = 6193.0022 kcal/mol (6178.3124 without restraints) Performing minimization step: 998. Total energy = 6188.1970 kcal/mol (6173.5160 without restraints) Performing minimization step: 999. Total energy = 6183.3991 kcal/mol (6168.7268 without restraints) Performing minimization step: 1000. Total energy = 6178.6076 kcal/mol (6163.9438 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 6173.8232 kcal/mol (6159.1681 without restraints) Performing minimization step: 1002. Total energy = 6169.0451 kcal/mol (6154.3987 without restraints) Performing minimization step: 1003. Total energy = 6164.2741 kcal/mol (6149.6363 without restraints) Performing minimization step: 1004. Total energy = 6159.5090 kcal/mol (6144.8797 without restraints) Performing minimization step: 1005. Total energy = 6154.7503 kcal/mol (6140.1297 without restraints) Performing minimization step: 1006. Total energy = 6149.9984 kcal/mol (6135.3866 without restraints) Performing minimization step: 1007. Total energy = 6145.2532 kcal/mol (6130.6500 without restraints) Performing minimization step: 1008. Total energy = 6140.5149 kcal/mol (6125.9203 without restraints) Performing minimization step: 1009. Total energy = 6135.7829 kcal/mol (6121.1969 without restraints) Performing minimization step: 1010. Total energy = 6131.0574 kcal/mol (6116.4799 without restraints) Performing minimization step: 1011. Total energy = 6126.3382 kcal/mol (6111.7694 without restraints) Performing minimization step: 1012. Total energy = 6121.6256 kcal/mol (6107.0655 without restraints) Performing minimization step: 1013. Total energy = 6116.9197 kcal/mol (6102.3682 without restraints) Performing minimization step: 1014. Total energy = 6112.2203 kcal/mol (6097.6774 without restraints) Performing minimization step: 1015. Total energy = 6107.5275 kcal/mol (6092.9934 without restraints) Performing minimization step: 1016. Total energy = 6102.8408 kcal/mol (6088.3151 without restraints) Performing minimization step: 1017. Total energy = 6098.1608 kcal/mol (6083.6437 without restraints) Performing minimization step: 1018. Total energy = 6093.4873 kcal/mol (6078.9788 without restraints) Performing minimization step: 1019. Total energy = 6088.8201 kcal/mol (6074.3202 without restraints) Performing minimization step: 1020. Total energy = 6084.1593 kcal/mol (6069.6679 without restraints) Performing minimization step: 1021. Total energy = 6079.5047 kcal/mol (6065.0219 without restraints) Performing minimization step: 1022. Total energy = 6074.8566 kcal/mol (6060.3824 without restraints) Performing minimization step: 1023. Total energy = 6070.2147 kcal/mol (6055.7490 without restraints) Performing minimization step: 1024. Total energy = 6065.5796 kcal/mol (6051.1225 without restraints) Performing minimization step: 1025. Total energy = 6060.9508 kcal/mol (6046.5022 without restraints) Performing minimization step: 1026. Total energy = 6056.3281 kcal/mol (6041.8881 without restraints) Performing minimization step: 1027. Total energy = 6051.7119 kcal/mol (6037.2804 without restraints) Performing minimization step: 1028. Total energy = 6047.1020 kcal/mol (6032.6791 without restraints) Performing minimization step: 1029. Total energy = 6042.4984 kcal/mol (6028.0841 without restraints) Performing minimization step: 1030. Total energy = 6037.9012 kcal/mol (6023.4953 without restraints) Performing minimization step: 1031. Total energy = 6033.3099 kcal/mol (6018.9127 without restraints) Performing minimization step: 1032. Total energy = 6028.7249 kcal/mol (6014.3361 without restraints) Performing minimization step: 1033. Total energy = 6024.1458 kcal/mol (6009.7655 without restraints) Performing minimization step: 1034. Total energy = 6019.5730 kcal/mol (6005.2014 without restraints) Performing minimization step: 1035. Total energy = 6015.0068 kcal/mol (6000.6436 without restraints) Performing minimization step: 1036. Total energy = 6010.4466 kcal/mol (5996.0918 without restraints) Performing minimization step: 1037. Total energy = 6005.8924 kcal/mol (5991.5462 without restraints) Performing minimization step: 1038. Total energy = 6001.3444 kcal/mol (5987.0067 without restraints) Performing minimization step: 1039. Total energy = 5996.8026 kcal/mol (5982.4735 without restraints) Performing minimization step: 1040. Total energy = 5992.2666 kcal/mol (5977.9459 without restraints) Performing minimization step: 1041. Total energy = 5987.7372 kcal/mol (5973.4251 without restraints) Performing minimization step: 1042. Total energy = 5983.2145 kcal/mol (5968.9109 without restraints) Performing minimization step: 1043. Total energy = 5978.6974 kcal/mol (5964.4022 without restraints) Performing minimization step: 1044. Total energy = 5974.1865 kcal/mol (5959.8998 without restraints) Performing minimization step: 1045. Total energy = 5969.6812 kcal/mol (5955.4029 without restraints) Performing minimization step: 1046. Total energy = 5965.1824 kcal/mol (5950.9127 without restraints) Performing minimization step: 1047. Total energy = 5960.6894 kcal/mol (5946.4282 without restraints) Performing minimization step: 1048. Total energy = 5956.2026 kcal/mol (5941.9498 without restraints) Performing minimization step: 1049. Total energy = 5951.7221 kcal/mol (5937.4779 without restraints) Performing minimization step: 1050. Total energy = 5947.2474 kcal/mol (5933.0116 without restraints) Performing minimization step: 1051. Total energy = 5942.7781 kcal/mol (5928.5507 without restraints) Performing minimization step: 1052. Total energy = 5938.3153 kcal/mol (5924.0963 without restraints) Performing minimization step: 1053. Total energy = 5933.8581 kcal/mol (5919.6476 without restraints) Performing minimization step: 1054. Total energy = 5929.4072 kcal/mol (5915.2051 without restraints) Performing minimization step: 1055. Total energy = 5924.9624 kcal/mol (5910.7689 without restraints) Performing minimization step: 1056. Total energy = 5920.5231 kcal/mol (5906.3379 without restraints) Performing minimization step: 1057. Total energy = 5916.0900 kcal/mol (5901.9133 without restraints) Performing minimization step: 1058. Total energy = 5911.6629 kcal/mol (5897.4947 without restraints) Performing minimization step: 1059. Total energy = 5907.2416 kcal/mol (5893.0817 without restraints) Performing minimization step: 1060. Total energy = 5902.8260 kcal/mol (5888.6746 without restraints) Performing minimization step: 1061. Total energy = 5898.4164 kcal/mol (5884.2735 without restraints) Performing minimization step: 1062. Total energy = 5894.0131 kcal/mol (5879.8785 without restraints) Performing minimization step: 1063. Total energy = 5889.6157 kcal/mol (5875.4895 without restraints) Performing minimization step: 1064. Total energy = 5885.2238 kcal/mol (5871.1061 without restraints) Performing minimization step: 1065. Total energy = 5880.8378 kcal/mol (5866.7285 without restraints) Performing minimization step: 1066. Total energy = 5876.4577 kcal/mol (5862.3567 without restraints) Performing minimization step: 1067. Total energy = 5872.0833 kcal/mol (5857.9908 without restraints) Performing minimization step: 1068. Total energy = 5867.7146 kcal/mol (5853.6304 without restraints) Performing minimization step: 1069. Total energy = 5863.3519 kcal/mol (5849.2761 without restraints) Performing minimization step: 1070. Total energy = 5858.9951 kcal/mol (5844.9279 without restraints) Performing minimization step: 1071. Total energy = 5854.6443 kcal/mol (5840.5855 without restraints) Performing minimization step: 1072. Total energy = 5850.2994 kcal/mol (5836.2488 without restraints) Performing minimization step: 1073. Total energy = 5845.9600 kcal/mol (5831.9178 without restraints) Performing minimization step: 1074. Total energy = 5841.6258 kcal/mol (5827.5920 without restraints) Performing minimization step: 1075. Total energy = 5837.2977 kcal/mol (5823.2722 without restraints) Performing minimization step: 1076. Total energy = 5832.9754 kcal/mol (5818.9584 without restraints) Performing minimization step: 1077. Total energy = 5828.6592 kcal/mol (5814.6506 without restraints) Performing minimization step: 1078. Total energy = 5824.3483 kcal/mol (5810.3480 without restraints) Performing minimization step: 1079. Total energy = 5820.0430 kcal/mol (5806.0510 without restraints) Performing minimization step: 1080. Total energy = 5815.7437 kcal/mol (5801.7600 without restraints) Performing minimization step: 1081. Total energy = 5811.4502 kcal/mol (5797.4749 without restraints) Performing minimization step: 1082. Total energy = 5807.1620 kcal/mol (5793.1951 without restraints) Performing minimization step: 1083. Total energy = 5802.8793 kcal/mol (5788.9208 without restraints) Performing minimization step: 1084. Total energy = 5798.6019 kcal/mol (5784.6517 without restraints) Performing minimization step: 1085. Total energy = 5794.3305 kcal/mol (5780.3886 without restraints) Performing minimization step: 1086. Total energy = 5790.0648 kcal/mol (5776.1313 without restraints) Performing minimization step: 1087. Total energy = 5785.8048 kcal/mol (5771.8796 without restraints) Performing minimization step: 1088. Total energy = 5781.5502 kcal/mol (5767.6334 without restraints) Performing minimization step: 1089. Total energy = 5777.3015 kcal/mol (5763.3929 without restraints) Performing minimization step: 1090. Total energy = 5773.0579 kcal/mol (5759.1577 without restraints) Performing minimization step: 1091. Total energy = 5768.8199 kcal/mol (5754.9279 without restraints) Performing minimization step: 1092. Total energy = 5764.5876 kcal/mol (5750.7039 without restraints) Performing minimization step: 1093. Total energy = 5760.3611 kcal/mol (5746.4858 without restraints) Performing minimization step: 1094. Total energy = 5756.1399 kcal/mol (5742.2730 without restraints) Performing minimization step: 1095. Total energy = 5751.9249 kcal/mol (5738.0662 without restraints) Performing minimization step: 1096. Total energy = 5747.7146 kcal/mol (5733.8642 without restraints) Performing minimization step: 1097. Total energy = 5743.5092 kcal/mol (5729.6672 without restraints) Performing minimization step: 1098. Total energy = 5739.3103 kcal/mol (5725.4765 without restraints) Performing minimization step: 1099. Total energy = 5735.1168 kcal/mol (5721.2914 without restraints) Performing minimization step: 1100. Total energy = 5730.9285 kcal/mol (5717.1112 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 5726.7458 kcal/mol (5712.9369 without restraints) Performing minimization step: 1102. Total energy = 5722.5691 kcal/mol (5708.7685 without restraints) Performing minimization step: 1103. Total energy = 5718.3977 kcal/mol (5704.6053 without restraints) Performing minimization step: 1104. Total energy = 5714.2312 kcal/mol (5700.4470 without restraints) Performing minimization step: 1105. Total energy = 5710.0702 kcal/mol (5696.2945 without restraints) Performing minimization step: 1106. Total energy = 5705.9147 kcal/mol (5692.1472 without restraints) Performing minimization step: 1107. Total energy = 5701.7652 kcal/mol (5688.0060 without restraints) Performing minimization step: 1108. Total energy = 5697.6203 kcal/mol (5683.8693 without restraints) Performing minimization step: 1109. Total energy = 5693.4814 kcal/mol (5679.7387 without restraints) Performing minimization step: 1110. Total energy = 5689.3477 kcal/mol (5675.6132 without restraints) Performing minimization step: 1111. Total energy = 5685.2196 kcal/mol (5671.4934 without restraints) Performing minimization step: 1112. Total energy = 5681.0974 kcal/mol (5667.3796 without restraints) Performing minimization step: 1113. Total energy = 5676.9798 kcal/mol (5663.2701 without restraints) Performing minimization step: 1114. Total energy = 5672.8678 kcal/mol (5659.1664 without restraints) Performing minimization step: 1115. Total energy = 5668.7610 kcal/mol (5655.0678 without restraints) Performing minimization step: 1116. Total energy = 5664.6599 kcal/mol (5650.9750 without restraints) Performing minimization step: 1117. Total energy = 5660.5640 kcal/mol (5646.8873 without restraints) Performing minimization step: 1118. Total energy = 5656.4733 kcal/mol (5642.8048 without restraints) Performing minimization step: 1119. Total energy = 5652.3880 kcal/mol (5638.7276 without restraints) Performing minimization step: 1120. Total energy = 5648.3076 kcal/mol (5634.6556 without restraints) Performing minimization step: 1121. Total energy = 5644.2325 kcal/mol (5630.5886 without restraints) Performing minimization step: 1122. Total energy = 5640.1628 kcal/mol (5626.5272 without restraints) Performing minimization step: 1123. Total energy = 5636.0983 kcal/mol (5622.4708 without restraints) Performing minimization step: 1124. Total energy = 5632.0391 kcal/mol (5618.4199 without restraints) Performing minimization step: 1125. Total energy = 5627.9852 kcal/mol (5614.3742 without restraints) Performing minimization step: 1126. Total energy = 5623.9367 kcal/mol (5610.3341 without restraints) Performing minimization step: 1127. Total energy = 5619.8937 kcal/mol (5606.2991 without restraints) Performing minimization step: 1128. Total energy = 5615.8552 kcal/mol (5602.2688 without restraints) Performing minimization step: 1129. Total energy = 5611.8226 kcal/mol (5598.2444 without restraints) Performing minimization step: 1130. Total energy = 5607.7947 kcal/mol (5594.2247 without restraints) Performing minimization step: 1131. Total energy = 5603.7722 kcal/mol (5590.2105 without restraints) Performing minimization step: 1132. Total energy = 5599.7553 kcal/mol (5586.2018 without restraints) Performing minimization step: 1133. Total energy = 5595.7430 kcal/mol (5582.1976 without restraints) Performing minimization step: 1134. Total energy = 5591.7364 kcal/mol (5578.1992 without restraints) Performing minimization step: 1135. Total energy = 5587.7351 kcal/mol (5574.2060 without restraints) Performing minimization step: 1136. Total energy = 5583.7388 kcal/mol (5570.2181 without restraints) Performing minimization step: 1137. Total energy = 5579.7476 kcal/mol (5566.2349 without restraints) Performing minimization step: 1138. Total energy = 5575.7617 kcal/mol (5562.2570 without restraints) Performing minimization step: 1139. Total energy = 5571.7805 kcal/mol (5558.2841 without restraints) Performing minimization step: 1140. Total energy = 5567.8045 kcal/mol (5554.3163 without restraints) Performing minimization step: 1141. Total energy = 5563.8337 kcal/mol (5550.3537 without restraints) Performing minimization step: 1142. Total energy = 5559.8682 kcal/mol (5546.3963 without restraints) Performing minimization step: 1143. Total energy = 5555.9076 kcal/mol (5542.4439 without restraints) Performing minimization step: 1144. Total energy = 5551.9521 kcal/mol (5538.4965 without restraints) Performing minimization step: 1145. Total energy = 5548.0015 kcal/mol (5534.5541 without restraints) Performing minimization step: 1146. Total energy = 5544.0562 kcal/mol (5530.6169 without restraints) Performing minimization step: 1147. Total energy = 5540.1155 kcal/mol (5526.6843 without restraints) Performing minimization step: 1148. Total energy = 5536.1803 kcal/mol (5522.7573 without restraints) Performing minimization step: 1149. Total energy = 5532.2505 kcal/mol (5518.8356 without restraints) Performing minimization step: 1150. Total energy = 5528.3252 kcal/mol (5514.9184 without restraints) Performing minimization step: 1151. Total energy = 5524.4049 kcal/mol (5511.0063 without restraints) Performing minimization step: 1152. Total energy = 5520.4901 kcal/mol (5507.0995 without restraints) Performing minimization step: 1153. Total energy = 5516.5803 kcal/mol (5503.1978 without restraints) Performing minimization step: 1154. Total energy = 5512.6750 kcal/mol (5499.3008 without restraints) Performing minimization step: 1155. Total energy = 5508.7752 kcal/mol (5495.4090 without restraints) Performing minimization step: 1156. Total energy = 5504.8802 kcal/mol (5491.5221 without restraints) Performing minimization step: 1157. Total energy = 5500.9910 kcal/mol (5487.6410 without restraints) Performing minimization step: 1158. Total energy = 5497.1059 kcal/mol (5483.7640 without restraints) Performing minimization step: 1159. Total energy = 5493.2260 kcal/mol (5479.8923 without restraints) Performing minimization step: 1160. Total energy = 5489.3511 kcal/mol (5476.0254 without restraints) Performing minimization step: 1161. Total energy = 5485.4815 kcal/mol (5472.1640 without restraints) Performing minimization step: 1162. Total energy = 5481.6167 kcal/mol (5468.3073 without restraints) Performing minimization step: 1163. Total energy = 5477.7565 kcal/mol (5464.4551 without restraints) Performing minimization step: 1164. Total energy = 5473.9015 kcal/mol (5460.6082 without restraints) Performing minimization step: 1165. Total energy = 5470.0516 kcal/mol (5456.7664 without restraints) Performing minimization step: 1166. Total energy = 5466.2059 kcal/mol (5452.9287 without restraints) Performing minimization step: 1167. Total energy = 5462.3658 kcal/mol (5449.0969 without restraints) Performing minimization step: 1168. Total energy = 5458.5305 kcal/mol (5445.2696 without restraints) Performing minimization step: 1169. Total energy = 5454.7001 kcal/mol (5441.4472 without restraints) Performing minimization step: 1170. Total energy = 5450.8743 kcal/mol (5437.6295 without restraints) Performing minimization step: 1171. Total energy = 5447.0542 kcal/mol (5433.8175 without restraints) Performing minimization step: 1172. Total energy = 5443.2388 kcal/mol (5430.0101 without restraints) Performing minimization step: 1173. Total energy = 5439.4281 kcal/mol (5426.2076 without restraints) Performing minimization step: 1174. Total energy = 5435.6222 kcal/mol (5422.4096 without restraints) Performing minimization step: 1175. Total energy = 5431.8210 kcal/mol (5418.6163 without restraints) Performing minimization step: 1176. Total energy = 5428.0251 kcal/mol (5414.8287 without restraints) Performing minimization step: 1177. Total energy = 5424.2345 kcal/mol (5411.0462 without restraints) Performing minimization step: 1178. Total energy = 5420.4482 kcal/mol (5407.2678 without restraints) Performing minimization step: 1179. Total energy = 5416.6673 kcal/mol (5403.4950 without restraints) Performing minimization step: 1180. Total energy = 5412.8907 kcal/mol (5399.7265 without restraints) Performing minimization step: 1181. Total energy = 5409.1189 kcal/mol (5395.9627 without restraints) Performing minimization step: 1182. Total energy = 5405.3518 kcal/mol (5392.2036 without restraints) Performing minimization step: 1183. Total energy = 5401.5894 kcal/mol (5388.4492 without restraints) Performing minimization step: 1184. Total energy = 5397.8323 kcal/mol (5384.7001 without restraints) Performing minimization step: 1185. Total energy = 5394.0797 kcal/mol (5380.9555 without restraints) Performing minimization step: 1186. Total energy = 5390.3317 kcal/mol (5377.2156 without restraints) Performing minimization step: 1187. Total energy = 5386.5887 kcal/mol (5373.4806 without restraints) Performing minimization step: 1188. Total energy = 5382.8509 kcal/mol (5369.7509 without restraints) Performing minimization step: 1189. Total energy = 5379.1179 kcal/mol (5366.0257 without restraints) Performing minimization step: 1190. Total energy = 5375.3889 kcal/mol (5362.3049 without restraints) Performing minimization step: 1191. Total energy = 5371.6651 kcal/mol (5358.5891 without restraints) Performing minimization step: 1192. Total energy = 5367.9464 kcal/mol (5354.8784 without restraints) Performing minimization step: 1193. Total energy = 5364.2323 kcal/mol (5351.1722 without restraints) Performing minimization step: 1194. Total energy = 5360.5227 kcal/mol (5347.4706 without restraints) Performing minimization step: 1195. Total energy = 5356.8176 kcal/mol (5343.7733 without restraints) Performing minimization step: 1196. Total energy = 5353.1173 kcal/mol (5340.0812 without restraints) Performing minimization step: 1197. Total energy = 5349.4219 kcal/mol (5336.3938 without restraints) Performing minimization step: 1198. Total energy = 5345.7316 kcal/mol (5332.7115 without restraints) Performing minimization step: 1199. Total energy = 5342.0463 kcal/mol (5329.0342 without restraints) Performing minimization step: 1200. Total energy = 5338.3650 kcal/mol (5325.3609 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 5334.6884 kcal/mol (5321.6923 without restraints) Performing minimization step: 1202. Total energy = 5331.0168 kcal/mol (5318.0286 without restraints) Performing minimization step: 1203. Total energy = 5327.3497 kcal/mol (5314.3694 without restraints) Performing minimization step: 1204. Total energy = 5323.6873 kcal/mol (5310.7150 without restraints) Performing minimization step: 1205. Total energy = 5320.0297 kcal/mol (5307.0654 without restraints) Performing minimization step: 1206. Total energy = 5316.3765 kcal/mol (5303.4201 without restraints) Performing minimization step: 1207. Total energy = 5312.7279 kcal/mol (5299.7794 without restraints) Performing minimization step: 1208. Total energy = 5309.0845 kcal/mol (5296.1441 without restraints) Performing minimization step: 1209. Total energy = 5305.4450 kcal/mol (5292.5126 without restraints) Performing minimization step: 1210. Total energy = 5301.8106 kcal/mol (5288.8861 without restraints) Performing minimization step: 1211. Total energy = 5298.1810 kcal/mol (5285.2644 without restraints) Performing minimization step: 1212. Total energy = 5294.5556 kcal/mol (5281.6470 without restraints) Performing minimization step: 1213. Total energy = 5290.9351 kcal/mol (5278.0344 without restraints) Performing minimization step: 1214. Total energy = 5287.3190 kcal/mol (5274.4263 without restraints) Performing minimization step: 1215. Total energy = 5283.7075 kcal/mol (5270.8227 without restraints) Performing minimization step: 1216. Total energy = 5280.1008 kcal/mol (5267.2240 without restraints) Performing minimization step: 1217. Total energy = 5276.4988 kcal/mol (5263.6299 without restraints) Performing minimization step: 1218. Total energy = 5272.9016 kcal/mol (5260.0405 without restraints) Performing minimization step: 1219. Total energy = 5269.3088 kcal/mol (5256.4556 without restraints) Performing minimization step: 1220. Total energy = 5265.7205 kcal/mol (5252.8753 without restraints) Performing minimization step: 1221. Total energy = 5262.1368 kcal/mol (5249.2995 without restraints) Performing minimization step: 1222. Total energy = 5258.5583 kcal/mol (5245.7291 without restraints) Performing minimization step: 1223. Total energy = 5254.9838 kcal/mol (5242.1624 without restraints) Performing minimization step: 1224. Total energy = 5251.4142 kcal/mol (5238.6007 without restraints) Performing minimization step: 1225. Total energy = 5247.8490 kcal/mol (5235.0435 without restraints) Performing minimization step: 1226. Total energy = 5244.2885 kcal/mol (5231.4908 without restraints) Performing minimization step: 1227. Total energy = 5240.7321 kcal/mol (5227.9424 without restraints) Performing minimization step: 1228. Total energy = 5237.1807 kcal/mol (5224.3988 without restraints) Performing minimization step: 1229. Total energy = 5233.6337 kcal/mol (5220.8596 without restraints) Performing minimization step: 1230. Total energy = 5230.0908 kcal/mol (5217.3246 without restraints) Performing minimization step: 1231. Total energy = 5226.5527 kcal/mol (5213.7944 without restraints) Performing minimization step: 1232. Total energy = 5223.0195 kcal/mol (5210.2691 without restraints) Performing minimization step: 1233. Total energy = 5219.4907 kcal/mol (5206.7482 without restraints) Performing minimization step: 1234. Total energy = 5215.9663 kcal/mol (5203.2316 without restraints) Performing minimization step: 1235. Total energy = 5212.4463 kcal/mol (5199.7197 without restraints) Performing minimization step: 1236. Total energy = 5208.9310 kcal/mol (5196.2121 without restraints) Performing minimization step: 1237. Total energy = 5205.4197 kcal/mol (5192.7086 without restraints) Performing minimization step: 1238. Total energy = 5201.9132 kcal/mol (5189.2101 without restraints) Performing minimization step: 1239. Total energy = 5198.4110 kcal/mol (5185.7156 without restraints) Performing minimization step: 1240. Total energy = 5194.9134 kcal/mol (5182.2258 without restraints) Performing minimization step: 1241. Total energy = 5191.4201 kcal/mol (5178.7406 without restraints) Performing minimization step: 1242. Total energy = 5187.9320 kcal/mol (5175.2603 without restraints) Performing minimization step: 1243. Total energy = 5184.4476 kcal/mol (5171.7835 without restraints) Performing minimization step: 1244. Total energy = 5180.9678 kcal/mol (5168.3118 without restraints) Performing minimization step: 1245. Total energy = 5177.4929 kcal/mol (5164.8447 without restraints) Performing minimization step: 1246. Total energy = 5174.0219 kcal/mol (5161.3816 without restraints) Performing minimization step: 1247. Total energy = 5170.5559 kcal/mol (5157.9234 without restraints) Performing minimization step: 1248. Total energy = 5167.0940 kcal/mol (5154.4694 without restraints) Performing minimization step: 1249. Total energy = 5163.6367 kcal/mol (5151.0198 without restraints) Performing minimization step: 1250. Total energy = 5160.1837 kcal/mol (5147.5747 without restraints) Performing minimization step: 1251. Total energy = 5156.7350 kcal/mol (5144.1339 without restraints) Performing minimization step: 1252. Total energy = 5153.2908 kcal/mol (5140.6974 without restraints) Performing minimization step: 1253. Total energy = 5149.8511 kcal/mol (5137.2656 without restraints) Performing minimization step: 1254. Total energy = 5146.4158 kcal/mol (5133.8381 without restraints) Performing minimization step: 1255. Total energy = 5142.9850 kcal/mol (5130.4152 without restraints) Performing minimization step: 1256. Total energy = 5139.5585 kcal/mol (5126.9963 without restraints) Performing minimization step: 1257. Total energy = 5136.1361 kcal/mol (5123.5818 without restraints) Performing minimization step: 1258. Total energy = 5132.7186 kcal/mol (5120.1721 without restraints) Performing minimization step: 1259. Total energy = 5129.3055 kcal/mol (5116.7668 without restraints) Performing minimization step: 1260. Total energy = 5125.8966 kcal/mol (5113.3659 without restraints) Performing minimization step: 1261. Total energy = 5122.4928 kcal/mol (5109.9698 without restraints) Performing minimization step: 1262. Total energy = 5119.0927 kcal/mol (5106.5774 without restraints) Performing minimization step: 1263. Total energy = 5115.6967 kcal/mol (5103.1893 without restraints) Performing minimization step: 1264. Total energy = 5112.3052 kcal/mol (5099.8055 without restraints) Performing minimization step: 1265. Total energy = 5108.9181 kcal/mol (5096.4263 without restraints) Performing minimization step: 1266. Total energy = 5105.5352 kcal/mol (5093.0511 without restraints) Performing minimization step: 1267. Total energy = 5102.1569 kcal/mol (5089.6805 without restraints) Performing minimization step: 1268. Total energy = 5098.7836 kcal/mol (5086.3151 without restraints) Performing minimization step: 1269. Total energy = 5095.4141 kcal/mol (5082.9536 without restraints) Performing minimization step: 1270. Total energy = 5092.0491 kcal/mol (5079.5962 without restraints) Performing minimization step: 1271. Total energy = 5088.6882 kcal/mol (5076.2431 without restraints) Performing minimization step: 1272. Total energy = 5085.3318 kcal/mol (5072.8944 without restraints) Performing minimization step: 1273. Total energy = 5081.9797 kcal/mol (5069.5500 without restraints) Performing minimization step: 1274. Total energy = 5078.6319 kcal/mol (5066.2099 without restraints) Performing minimization step: 1275. Total energy = 5075.2879 kcal/mol (5062.8738 without restraints) Performing minimization step: 1276. Total energy = 5071.9487 kcal/mol (5059.5424 without restraints) Performing minimization step: 1277. Total energy = 5068.6137 kcal/mol (5056.2150 without restraints) Performing minimization step: 1278. Total energy = 5065.2827 kcal/mol (5052.8917 without restraints) Performing minimization step: 1279. Total energy = 5061.9561 kcal/mol (5049.5729 without restraints) Performing minimization step: 1280. Total energy = 5058.6338 kcal/mol (5046.2583 without restraints) Performing minimization step: 1281. Total energy = 5055.3157 kcal/mol (5042.9479 without restraints) Performing minimization step: 1282. Total energy = 5052.0021 kcal/mol (5039.6422 without restraints) Performing minimization step: 1283. Total energy = 5048.6927 kcal/mol (5036.3404 without restraints) Performing minimization step: 1284. Total energy = 5045.3873 kcal/mol (5033.0428 without restraints) Performing minimization step: 1285. Total energy = 5042.0868 kcal/mol (5029.7501 without restraints) Performing minimization step: 1286. Total energy = 5038.7903 kcal/mol (5026.4613 without restraints) Performing minimization step: 1287. Total energy = 5035.4979 kcal/mol (5023.1766 without restraints) Performing minimization step: 1288. Total energy = 5032.2097 kcal/mol (5019.8961 without restraints) Performing minimization step: 1289. Total energy = 5028.9258 kcal/mol (5016.6199 without restraints) Performing minimization step: 1290. Total energy = 5025.6464 kcal/mol (5013.3482 without restraints) Performing minimization step: 1291. Total energy = 5022.3714 kcal/mol (5010.0810 without restraints) Performing minimization step: 1292. Total energy = 5019.1003 kcal/mol (5006.8176 without restraints) Performing minimization step: 1293. Total energy = 5015.8335 kcal/mol (5003.5585 without restraints) Performing minimization step: 1294. Total energy = 5012.5710 kcal/mol (5000.3037 without restraints) Performing minimization step: 1295. Total energy = 5009.3126 kcal/mol (4997.0530 without restraints) Performing minimization step: 1296. Total energy = 5006.0588 kcal/mol (4993.8069 without restraints) Performing minimization step: 1297. Total energy = 5002.8086 kcal/mol (4990.5643 without restraints) Performing minimization step: 1298. Total energy = 4999.5628 kcal/mol (4987.3262 without restraints) Performing minimization step: 1299. Total energy = 4996.3215 kcal/mol (4984.0927 without restraints) Performing minimization step: 1300. Total energy = 4993.0843 kcal/mol (4980.8631 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 4989.8512 kcal/mol (4977.6376 without restraints) Performing minimization step: 1302. Total energy = 4986.6223 kcal/mol (4974.4165 without restraints) Performing minimization step: 1303. Total energy = 4983.3978 kcal/mol (4971.1996 without restraints) Performing minimization step: 1304. Total energy = 4980.1767 kcal/mol (4967.9862 without restraints) Performing minimization step: 1305. Total energy = 4976.9604 kcal/mol (4964.7776 without restraints) Performing minimization step: 1306. Total energy = 4973.7480 kcal/mol (4961.5728 without restraints) Performing minimization step: 1307. Total energy = 4970.5400 kcal/mol (4958.3725 without restraints) Performing minimization step: 1308. Total energy = 4967.3361 kcal/mol (4955.1762 without restraints) Performing minimization step: 1309. Total energy = 4964.1361 kcal/mol (4951.9840 without restraints) Performing minimization step: 1310. Total energy = 4960.9406 kcal/mol (4948.7961 without restraints) Performing minimization step: 1311. Total energy = 4957.7491 kcal/mol (4945.6123 without restraints) Performing minimization step: 1312. Total energy = 4954.5617 kcal/mol (4942.4325 without restraints) Performing minimization step: 1313. Total energy = 4951.3785 kcal/mol (4939.2570 without restraints) Performing minimization step: 1314. Total energy = 4948.1995 kcal/mol (4936.0856 without restraints) Performing minimization step: 1315. Total energy = 4945.0246 kcal/mol (4932.9183 without restraints) Performing minimization step: 1316. Total energy = 4941.8538 kcal/mol (4929.7552 without restraints) Performing minimization step: 1317. Total energy = 4938.6869 kcal/mol (4926.5959 without restraints) Performing minimization step: 1318. Total energy = 4935.5244 kcal/mol (4923.4410 without restraints) Performing minimization step: 1319. Total energy = 4932.3660 kcal/mol (4920.2902 without restraints) Performing minimization step: 1320. Total energy = 4929.2122 kcal/mol (4917.1441 without restraints) Performing minimization step: 1321. Total energy = 4926.0618 kcal/mol (4914.0013 without restraints) Performing minimization step: 1322. Total energy = 4922.9159 kcal/mol (4910.8631 without restraints) Performing minimization step: 1323. Total energy = 4919.7740 kcal/mol (4907.7288 without restraints) Performing minimization step: 1324. Total energy = 4916.6365 kcal/mol (4904.5988 without restraints) Performing minimization step: 1325. Total energy = 4913.5025 kcal/mol (4901.4724 without restraints) Performing minimization step: 1326. Total energy = 4910.3728 kcal/mol (4898.3502 without restraints) Performing minimization step: 1327. Total energy = 4907.2472 kcal/mol (4895.2325 without restraints) Performing minimization step: 1328. Total energy = 4904.1259 kcal/mol (4892.1187 without restraints) Performing minimization step: 1329. Total energy = 4901.0088 kcal/mol (4889.0092 without restraints) Performing minimization step: 1330. Total energy = 4897.8956 kcal/mol (4885.9036 without restraints) Performing minimization step: 1331. Total energy = 4894.7864 kcal/mol (4882.8020 without restraints) Performing minimization step: 1332. Total energy = 4891.6810 kcal/mol (4879.7040 without restraints) Performing minimization step: 1333. Total energy = 4888.5798 kcal/mol (4876.6105 without restraints) Performing minimization step: 1334. Total energy = 4885.4827 kcal/mol (4873.5211 without restraints) Performing minimization step: 1335. Total energy = 4882.3899 kcal/mol (4870.4358 without restraints) Performing minimization step: 1336. Total energy = 4879.3011 kcal/mol (4867.3546 without restraints) Performing minimization step: 1337. Total energy = 4876.2159 kcal/mol (4864.2768 without restraints) Performing minimization step: 1338. Total energy = 4873.1352 kcal/mol (4861.2038 without restraints) Performing minimization step: 1339. Total energy = 4870.0585 kcal/mol (4858.1347 without restraints) Performing minimization step: 1340. Total energy = 4866.9858 kcal/mol (4855.0696 without restraints) Performing minimization step: 1341. Total energy = 4863.9171 kcal/mol (4852.0085 without restraints) Performing minimization step: 1342. Total energy = 4860.8524 kcal/mol (4848.9512 without restraints) Performing minimization step: 1343. Total energy = 4857.7917 kcal/mol (4845.8981 without restraints) Performing minimization step: 1344. Total energy = 4854.7350 kcal/mol (4842.8489 without restraints) Performing minimization step: 1345. Total energy = 4851.6824 kcal/mol (4839.8040 without restraints) Performing minimization step: 1346. Total energy = 4848.6335 kcal/mol (4836.7626 without restraints) Performing minimization step: 1347. Total energy = 4845.5887 kcal/mol (4833.7254 without restraints) Performing minimization step: 1348. Total energy = 4842.5485 kcal/mol (4830.6930 without restraints) Performing minimization step: 1349. Total energy = 4839.5119 kcal/mol (4827.6637 without restraints) Performing minimization step: 1350. Total energy = 4836.4791 kcal/mol (4824.6384 without restraints) Performing minimization step: 1351. Total energy = 4833.4503 kcal/mol (4821.6171 without restraints) Performing minimization step: 1352. Total energy = 4830.4260 kcal/mol (4818.6003 without restraints) Performing minimization step: 1353. Total energy = 4827.4056 kcal/mol (4815.5877 without restraints) Performing minimization step: 1354. Total energy = 4824.3894 kcal/mol (4812.5788 without restraints) Performing minimization step: 1355. Total energy = 4821.3770 kcal/mol (4809.5740 without restraints) Performing minimization step: 1356. Total energy = 4818.3689 kcal/mol (4806.5734 without restraints) Performing minimization step: 1357. Total energy = 4815.3644 kcal/mol (4803.5764 without restraints) Performing minimization step: 1358. Total energy = 4812.3638 kcal/mol (4800.5834 without restraints) Performing minimization step: 1359. Total energy = 4809.3673 kcal/mol (4797.5943 without restraints) Performing minimization step: 1360. Total energy = 4806.3746 kcal/mol (4794.6091 without restraints) Performing minimization step: 1361. Total energy = 4803.3859 kcal/mol (4791.6279 without restraints) Performing minimization step: 1362. Total energy = 4800.4012 kcal/mol (4788.6507 without restraints) Performing minimization step: 1363. Total energy = 4797.4205 kcal/mol (4785.6776 without restraints) Performing minimization step: 1364. Total energy = 4794.4438 kcal/mol (4782.7083 without restraints) Performing minimization step: 1365. Total energy = 4791.4715 kcal/mol (4779.7436 without restraints) Performing minimization step: 1366. Total energy = 4788.5027 kcal/mol (4776.7822 without restraints) Performing minimization step: 1367. Total energy = 4785.5377 kcal/mol (4773.8244 without restraints) Performing minimization step: 1368. Total energy = 4782.5764 kcal/mol (4770.8710 without restraints) Performing minimization step: 1369. Total energy = 4779.6197 kcal/mol (4767.9216 without restraints) Performing minimization step: 1370. Total energy = 4776.6667 kcal/mol (4764.9762 without restraints) Performing minimization step: 1371. Total energy = 4773.7175 kcal/mol (4762.0343 without restraints) Performing minimization step: 1372. Total energy = 4770.7720 kcal/mol (4759.0964 without restraints) Performing minimization step: 1373. Total energy = 4767.8309 kcal/mol (4756.1629 without restraints) Performing minimization step: 1374. Total energy = 4764.8937 kcal/mol (4753.2330 without restraints) Performing minimization step: 1375. Total energy = 4761.9601 kcal/mol (4750.3069 without restraints) Performing minimization step: 1376. Total energy = 4759.0301 kcal/mol (4747.3844 without restraints) Performing minimization step: 1377. Total energy = 4756.1043 kcal/mol (4744.4660 without restraints) Performing minimization step: 1378. Total energy = 4753.1824 kcal/mol (4741.5516 without restraints) Performing minimization step: 1379. Total energy = 4750.2647 kcal/mol (4738.6413 without restraints) Performing minimization step: 1380. Total energy = 4747.3505 kcal/mol (4735.7346 without restraints) Performing minimization step: 1381. Total energy = 4744.4406 kcal/mol (4732.8321 without restraints) Performing minimization step: 1382. Total energy = 4741.5342 kcal/mol (4729.9331 without restraints) Performing minimization step: 1383. Total energy = 4738.6317 kcal/mol (4727.0381 without restraints) Performing minimization step: 1384. Total energy = 4735.7329 kcal/mol (4724.1468 without restraints) Performing minimization step: 1385. Total energy = 4732.8383 kcal/mol (4721.2596 without restraints) Performing minimization step: 1386. Total energy = 4729.9472 kcal/mol (4718.3759 without restraints) Performing minimization step: 1387. Total energy = 4727.0604 kcal/mol (4715.4966 without restraints) Performing minimization step: 1388. Total energy = 4724.1774 kcal/mol (4712.6210 without restraints) Performing minimization step: 1389. Total energy = 4721.2980 kcal/mol (4709.7488 without restraints) Performing minimization step: 1390. Total energy = 4718.4223 kcal/mol (4706.8807 without restraints) Performing minimization step: 1391. Total energy = 4715.5509 kcal/mol (4704.0167 without restraints) Performing minimization step: 1392. Total energy = 4712.6832 kcal/mol (4701.1564 without restraints) Performing minimization step: 1393. Total energy = 4709.8193 kcal/mol (4698.3000 without restraints) Performing minimization step: 1394. Total energy = 4706.9591 kcal/mol (4695.4473 without restraints) Performing minimization step: 1395. Total energy = 4704.1031 kcal/mol (4692.5986 without restraints) Performing minimization step: 1396. Total energy = 4701.2516 kcal/mol (4689.7546 without restraints) Performing minimization step: 1397. Total energy = 4698.4034 kcal/mol (4686.9137 without restraints) Performing minimization step: 1398. Total energy = 4695.5583 kcal/mol (4684.0759 without restraints) Performing minimization step: 1399. Total energy = 4692.7174 kcal/mol (4681.2425 without restraints) Performing minimization step: 1400. Total energy = 4689.8805 kcal/mol (4678.4130 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 4687.0474 kcal/mol (4675.5873 without restraints) Performing minimization step: 1402. Total energy = 4684.2179 kcal/mol (4672.7652 without restraints) Performing minimization step: 1403. Total energy = 4681.3927 kcal/mol (4669.9473 without restraints) Performing minimization step: 1404. Total energy = 4678.5708 kcal/mol (4667.1328 without restraints) Performing minimization step: 1405. Total energy = 4675.7525 kcal/mol (4664.3219 without restraints) Performing minimization step: 1406. Total energy = 4672.9385 kcal/mol (4661.5152 without restraints) Performing minimization step: 1407. Total energy = 4670.1282 kcal/mol (4658.7123 without restraints) Performing minimization step: 1408. Total energy = 4667.3217 kcal/mol (4655.9131 without restraints) Performing minimization step: 1409. Total energy = 4664.5191 kcal/mol (4653.1179 without restraints) Performing minimization step: 1410. Total energy = 4661.7204 kcal/mol (4650.3264 without restraints) Performing minimization step: 1411. Total energy = 4658.9252 kcal/mol (4647.5387 without restraints) Performing minimization step: 1412. Total energy = 4656.1339 kcal/mol (4644.7549 without restraints) Performing minimization step: 1413. Total energy = 4653.3461 kcal/mol (4641.9745 without restraints) Performing minimization step: 1414. Total energy = 4650.5625 kcal/mol (4639.1981 without restraints) Performing minimization step: 1415. Total energy = 4647.7824 kcal/mol (4636.4253 without restraints) Performing minimization step: 1416. Total energy = 4645.0056 kcal/mol (4633.6558 without restraints) Performing minimization step: 1417. Total energy = 4642.2331 kcal/mol (4630.8907 without restraints) Performing minimization step: 1418. Total energy = 4639.4643 kcal/mol (4628.1293 without restraints) Performing minimization step: 1419. Total energy = 4636.6995 kcal/mol (4625.3719 without restraints) Performing minimization step: 1420. Total energy = 4633.9382 kcal/mol (4622.6178 without restraints) Performing minimization step: 1421. Total energy = 4631.1805 kcal/mol (4619.8675 without restraints) Performing minimization step: 1422. Total energy = 4628.4268 kcal/mol (4617.1211 without restraints) Performing minimization step: 1423. Total energy = 4625.6767 kcal/mol (4614.3783 without restraints) Performing minimization step: 1424. Total energy = 4622.9308 kcal/mol (4611.6397 without restraints) Performing minimization step: 1425. Total energy = 4620.1883 kcal/mol (4608.9045 without restraints) Performing minimization step: 1426. Total energy = 4617.4498 kcal/mol (4606.1733 without restraints) Performing minimization step: 1427. Total energy = 4614.7150 kcal/mol (4603.4459 without restraints) Performing minimization step: 1428. Total energy = 4611.9838 kcal/mol (4600.7221 without restraints) Performing minimization step: 1429. Total energy = 4609.2564 kcal/mol (4598.0019 without restraints) Performing minimization step: 1430. Total energy = 4606.5327 kcal/mol (4595.2854 without restraints) Performing minimization step: 1431. Total energy = 4603.8125 kcal/mol (4592.5726 without restraints) Performing minimization step: 1432. Total energy = 4601.0962 kcal/mol (4589.8636 without restraints) Performing minimization step: 1433. Total energy = 4598.3835 kcal/mol (4587.1582 without restraints) Performing minimization step: 1434. Total energy = 4595.6749 kcal/mol (4584.4568 without restraints) Performing minimization step: 1435. Total energy = 4592.9703 kcal/mol (4581.7595 without restraints) Performing minimization step: 1436. Total energy = 4590.2688 kcal/mol (4579.0653 without restraints) Performing minimization step: 1437. Total energy = 4587.5709 kcal/mol (4576.3747 without restraints) Performing minimization step: 1438. Total energy = 4584.8769 kcal/mol (4573.6881 without restraints) Performing minimization step: 1439. Total energy = 4582.1863 kcal/mol (4571.0044 without restraints) Performing minimization step: 1440. Total energy = 4579.4994 kcal/mol (4568.3249 without restraints) Performing minimization step: 1441. Total energy = 4576.8164 kcal/mol (4565.6493 without restraints) Performing minimization step: 1442. Total energy = 4574.1371 kcal/mol (4562.9772 without restraints) Performing minimization step: 1443. Total energy = 4571.4613 kcal/mol (4560.3087 without restraints) Performing minimization step: 1444. Total energy = 4568.7891 kcal/mol (4557.6438 without restraints) Performing minimization step: 1445. Total energy = 4566.1208 kcal/mol (4554.9827 without restraints) Performing minimization step: 1446. Total energy = 4563.4561 kcal/mol (4552.3252 without restraints) Performing minimization step: 1447. Total energy = 4560.7950 kcal/mol (4549.6714 without restraints) Performing minimization step: 1448. Total energy = 4558.1379 kcal/mol (4547.0215 without restraints) Performing minimization step: 1449. Total energy = 4555.4847 kcal/mol (4544.3756 without restraints) Performing minimization step: 1450. Total energy = 4552.8348 kcal/mol (4541.7329 without restraints) Performing minimization step: 1451. Total energy = 4550.1882 kcal/mol (4539.0934 without restraints) Performing minimization step: 1452. Total energy = 4547.5453 kcal/mol (4536.4578 without restraints) Performing minimization step: 1453. Total energy = 4544.9058 kcal/mol (4533.8256 without restraints) Performing minimization step: 1454. Total energy = 4542.2703 kcal/mol (4531.1974 without restraints) Performing minimization step: 1455. Total energy = 4539.6385 kcal/mol (4528.5727 without restraints) Performing minimization step: 1456. Total energy = 4537.0102 kcal/mol (4525.9517 without restraints) Performing minimization step: 1457. Total energy = 4534.3854 kcal/mol (4523.3341 without restraints) Performing minimization step: 1458. Total energy = 4531.7644 kcal/mol (4520.7205 without restraints) Performing minimization step: 1459. Total energy = 4529.1471 kcal/mol (4518.1102 without restraints) Performing minimization step: 1460. Total energy = 4526.5335 kcal/mol (4515.5038 without restraints) Performing minimization step: 1461. Total energy = 4523.9235 kcal/mol (4512.9011 without restraints) Performing minimization step: 1462. Total energy = 4521.3176 kcal/mol (4510.3023 without restraints) Performing minimization step: 1463. Total energy = 4518.7148 kcal/mol (4507.7068 without restraints) Performing minimization step: 1464. Total energy = 4516.1162 kcal/mol (4505.1155 without restraints) Performing minimization step: 1465. Total energy = 4513.5213 kcal/mol (4502.5274 without restraints) Performing minimization step: 1466. Total energy = 4510.9290 kcal/mol (4499.9425 without restraints) Performing minimization step: 1467. Total energy = 4508.3403 kcal/mol (4497.3610 without restraints) Performing minimization step: 1468. Total energy = 4505.7558 kcal/mol (4494.7838 without restraints) Performing minimization step: 1469. Total energy = 4503.1752 kcal/mol (4492.2102 without restraints) Performing minimization step: 1470. Total energy = 4500.5979 kcal/mol (4489.6401 without restraints) Performing minimization step: 1471. Total energy = 4498.0238 kcal/mol (4487.0733 without restraints) Performing minimization step: 1472. Total energy = 4495.4536 kcal/mol (4484.5102 without restraints) Performing minimization step: 1473. Total energy = 4492.8867 kcal/mol (4481.9504 without restraints) Performing minimization step: 1474. Total energy = 4490.3231 kcal/mol (4479.3940 without restraints) Performing minimization step: 1475. Total energy = 4487.7633 kcal/mol (4476.8414 without restraints) Performing minimization step: 1476. Total energy = 4485.2071 kcal/mol (4474.2924 without restraints) Performing minimization step: 1477. Total energy = 4482.6545 kcal/mol (4471.7468 without restraints) Performing minimization step: 1478. Total energy = 4480.1056 kcal/mol (4469.2051 without restraints) Performing minimization step: 1479. Total energy = 4477.5598 kcal/mol (4466.6665 without restraints) Performing minimization step: 1480. Total energy = 4475.0180 kcal/mol (4464.1318 without restraints) Performing minimization step: 1481. Total energy = 4472.4799 kcal/mol (4461.6010 without restraints) Performing minimization step: 1482. Total energy = 4469.9456 kcal/mol (4459.0737 without restraints) Performing minimization step: 1483. Total energy = 4467.4143 kcal/mol (4456.5495 without restraints) Performing minimization step: 1484. Total energy = 4464.8864 kcal/mol (4454.0288 without restraints) Performing minimization step: 1485. Total energy = 4462.3623 kcal/mol (4451.5118 without restraints) Performing minimization step: 1486. Total energy = 4459.8415 kcal/mol (4448.9981 without restraints) Performing minimization step: 1487. Total energy = 4457.3242 kcal/mol (4446.4879 without restraints) Performing minimization step: 1488. Total energy = 4454.8107 kcal/mol (4443.9815 without restraints) Performing minimization step: 1489. Total energy = 4452.3005 kcal/mol (4441.4784 without restraints) Performing minimization step: 1490. Total energy = 4449.7939 kcal/mol (4438.9790 without restraints) Performing minimization step: 1491. Total energy = 4447.2909 kcal/mol (4436.4831 without restraints) Performing minimization step: 1492. Total energy = 4444.7912 kcal/mol (4433.9905 without restraints) Performing minimization step: 1493. Total energy = 4442.2950 kcal/mol (4431.5014 without restraints) Performing minimization step: 1494. Total energy = 4439.8022 kcal/mol (4429.0155 without restraints) Performing minimization step: 1495. Total energy = 4437.3128 kcal/mol (4426.5334 without restraints) Performing minimization step: 1496. Total energy = 4434.8269 kcal/mol (4424.0546 without restraints) Performing minimization step: 1497. Total energy = 4432.3448 kcal/mol (4421.5797 without restraints) Performing minimization step: 1498. Total energy = 4429.8662 kcal/mol (4419.1082 without restraints) Performing minimization step: 1499. Total energy = 4427.3909 kcal/mol (4416.6399 without restraints) Performing minimization step: 1500. Total energy = 4424.9193 kcal/mol (4414.1754 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 4422.4513 kcal/mol (4411.7145 without restraints) Performing minimization step: 1502. Total energy = 4419.9866 kcal/mol (4409.2568 without restraints) Performing minimization step: 1503. Total energy = 4417.5252 kcal/mol (4406.8025 without restraints) Performing minimization step: 1504. Total energy = 4415.0677 kcal/mol (4404.3520 without restraints) Performing minimization step: 1505. Total energy = 4412.6134 kcal/mol (4401.9048 without restraints) Performing minimization step: 1506. Total energy = 4410.1628 kcal/mol (4399.4611 without restraints) Performing minimization step: 1507. Total energy = 4407.7151 kcal/mol (4397.0205 without restraints) Performing minimization step: 1508. Total energy = 4405.2712 kcal/mol (4394.5838 without restraints) Performing minimization step: 1509. Total energy = 4402.8303 kcal/mol (4392.1500 without restraints) Performing minimization step: 1510. Total energy = 4400.3934 kcal/mol (4389.7200 without restraints) Performing minimization step: 1511. Total energy = 4397.9597 kcal/mol (4387.2934 without restraints) Performing minimization step: 1512. Total energy = 4395.5300 kcal/mol (4384.8707 without restraints) Performing minimization step: 1513. Total energy = 4393.1032 kcal/mol (4382.4510 without restraints) Performing minimization step: 1514. Total energy = 4390.6800 kcal/mol (4380.0348 without restraints) Performing minimization step: 1515. Total energy = 4388.2602 kcal/mol (4377.6221 without restraints) Performing minimization step: 1516. Total energy = 4385.8439 kcal/mol (4375.2129 without restraints) Performing minimization step: 1517. Total energy = 4383.4309 kcal/mol (4372.8068 without restraints) Performing minimization step: 1518. Total energy = 4381.0208 kcal/mol (4370.4037 without restraints) Performing minimization step: 1519. Total energy = 4378.6150 kcal/mol (4368.0052 without restraints) Performing minimization step: 1520. Total energy = 4376.2128 kcal/mol (4365.6098 without restraints) Performing minimization step: 1521. Total energy = 4373.8134 kcal/mol (4363.2173 without restraints) Performing minimization step: 1522. Total energy = 4371.4173 kcal/mol (4360.8283 without restraints) Performing minimization step: 1523. Total energy = 4369.0248 kcal/mol (4358.4427 without restraints) Performing minimization step: 1524. Total energy = 4366.6359 kcal/mol (4356.0608 without restraints) Performing minimization step: 1525. Total energy = 4364.2501 kcal/mol (4353.6821 without restraints) Performing minimization step: 1526. Total energy = 4361.8676 kcal/mol (4351.3063 without restraints) Performing minimization step: 1527. Total energy = 4359.4878 kcal/mol (4348.9336 without restraints) Performing minimization step: 1528. Total energy = 4357.1122 kcal/mol (4346.5653 without restraints) Performing minimization step: 1529. Total energy = 4354.7401 kcal/mol (4344.2000 without restraints) Performing minimization step: 1530. Total energy = 4352.3712 kcal/mol (4341.8379 without restraints) Performing minimization step: 1531. Total energy = 4350.0055 kcal/mol (4339.4793 without restraints) Performing minimization step: 1532. Total energy = 4347.6432 kcal/mol (4337.1240 without restraints) Performing minimization step: 1533. Total energy = 4345.2841 kcal/mol (4334.7719 without restraints) Performing minimization step: 1534. Total energy = 4342.9285 kcal/mol (4332.4232 without restraints) Performing minimization step: 1535. Total energy = 4340.5764 kcal/mol (4330.0782 without restraints) Performing minimization step: 1536. Total energy = 4338.2277 kcal/mol (4327.7362 without restraints) Performing minimization step: 1537. Total energy = 4335.8819 kcal/mol (4325.3975 without restraints) Performing minimization step: 1538. Total energy = 4333.5401 kcal/mol (4323.0627 without restraints) Performing minimization step: 1539. Total energy = 4331.2016 kcal/mol (4320.7311 without restraints) Performing minimization step: 1540. Total energy = 4328.8662 kcal/mol (4318.4027 without restraints) Performing minimization step: 1541. Total energy = 4326.5343 kcal/mol (4316.0776 without restraints) Performing minimization step: 1542. Total energy = 4324.2056 kcal/mol (4313.7558 without restraints) Performing minimization step: 1543. Total energy = 4321.8798 kcal/mol (4311.4371 without restraints) Performing minimization step: 1544. Total energy = 4319.5578 kcal/mol (4309.1220 without restraints) Performing minimization step: 1545. Total energy = 4317.2389 kcal/mol (4306.8102 without restraints) Performing minimization step: 1546. Total energy = 4314.9236 kcal/mol (4304.5017 without restraints) Performing minimization step: 1547. Total energy = 4312.6117 kcal/mol (4302.1967 without restraints) Performing minimization step: 1548. Total energy = 4310.3029 kcal/mol (4299.8948 without restraints) Performing minimization step: 1549. Total energy = 4307.9975 kcal/mol (4297.5964 without restraints) Performing minimization step: 1550. Total energy = 4305.6956 kcal/mol (4295.3014 without restraints) Performing minimization step: 1551. Total energy = 4303.3971 kcal/mol (4293.0097 without restraints) Performing minimization step: 1552. Total energy = 4301.1011 kcal/mol (4290.7207 without restraints) Performing minimization step: 1553. Total energy = 4298.8086 kcal/mol (4288.4350 without restraints) Performing minimization step: 1554. Total energy = 4296.5196 kcal/mol (4286.1530 without restraints) Performing minimization step: 1555. Total energy = 4294.2340 kcal/mol (4283.8742 without restraints) Performing minimization step: 1556. Total energy = 4291.9518 kcal/mol (4281.5989 without restraints) Performing minimization step: 1557. Total energy = 4289.6728 kcal/mol (4279.3268 without restraints) Performing minimization step: 1558. Total energy = 4287.3967 kcal/mol (4277.0576 without restraints) Performing minimization step: 1559. Total energy = 4285.1241 kcal/mol (4274.7919 without restraints) Performing minimization step: 1560. Total energy = 4282.8549 kcal/mol (4272.5296 without restraints) Performing minimization step: 1561. Total energy = 4280.5886 kcal/mol (4270.2701 without restraints) Performing minimization step: 1562. Total energy = 4278.3255 kcal/mol (4268.0139 without restraints) Performing minimization step: 1563. Total energy = 4276.0659 kcal/mol (4265.7611 without restraints) Performing minimization step: 1564. Total energy = 4273.8095 kcal/mol (4263.5115 without restraints) Performing minimization step: 1565. Total energy = 4271.5558 kcal/mol (4261.2648 without restraints) Performing minimization step: 1566. Total energy = 4269.3058 kcal/mol (4259.0216 without restraints) Performing minimization step: 1567. Total energy = 4267.0590 kcal/mol (4256.7816 without restraints) Performing minimization step: 1568. Total energy = 4264.8155 kcal/mol (4254.5450 without restraints) Performing minimization step: 1569. Total energy = 4262.5753 kcal/mol (4252.3117 without restraints) Performing minimization step: 1570. Total energy = 4260.3382 kcal/mol (4250.0815 without restraints) Performing minimization step: 1571. Total energy = 4258.1043 kcal/mol (4247.8544 without restraints) Performing minimization step: 1572. Total energy = 4255.8738 kcal/mol (4245.6308 without restraints) Performing minimization step: 1573. Total energy = 4253.6466 kcal/mol (4243.4103 without restraints) Performing minimization step: 1574. Total energy = 4251.4226 kcal/mol (4241.1932 without restraints) Performing minimization step: 1575. Total energy = 4249.2020 kcal/mol (4238.9795 without restraints) Performing minimization step: 1576. Total energy = 4246.9844 kcal/mol (4236.7686 without restraints) Performing minimization step: 1577. Total energy = 4244.7701 kcal/mol (4234.5612 without restraints) Performing minimization step: 1578. Total energy = 4242.5591 kcal/mol (4232.3571 without restraints) Performing minimization step: 1579. Total energy = 4240.3512 kcal/mol (4230.1558 without restraints) Performing minimization step: 1580. Total energy = 4238.1460 kcal/mol (4227.9574 without restraints) Performing minimization step: 1581. Total energy = 4235.9444 kcal/mol (4225.7627 without restraints) Performing minimization step: 1582. Total energy = 4233.7459 kcal/mol (4223.5710 without restraints) Performing minimization step: 1583. Total energy = 4231.5507 kcal/mol (4221.3825 without restraints) Performing minimization step: 1584. Total energy = 4229.3587 kcal/mol (4219.1973 without restraints) Performing minimization step: 1585. Total energy = 4227.1695 kcal/mol (4217.0150 without restraints) Performing minimization step: 1586. Total energy = 4224.9843 kcal/mol (4214.8366 without restraints) Performing minimization step: 1587. Total energy = 4222.8017 kcal/mol (4212.6607 without restraints) Performing minimization step: 1588. Total energy = 4220.6221 kcal/mol (4210.4879 without restraints) Performing minimization step: 1589. Total energy = 4218.4457 kcal/mol (4208.3182 without restraints) Performing minimization step: 1590. Total energy = 4216.2724 kcal/mol (4206.1517 without restraints) Performing minimization step: 1591. Total energy = 4214.1022 kcal/mol (4203.9883 without restraints) Performing minimization step: 1592. Total energy = 4211.9351 kcal/mol (4201.8279 without restraints) Performing minimization step: 1593. Total energy = 4209.7712 kcal/mol (4199.6708 without restraints) Performing minimization step: 1594. Total energy = 4207.6105 kcal/mol (4197.5168 without restraints) Performing minimization step: 1595. Total energy = 4205.4528 kcal/mol (4195.3657 without restraints) Performing minimization step: 1596. Total energy = 4203.2980 kcal/mol (4193.2180 without restraints) Performing minimization step: 1597. Total energy = 4201.1471 kcal/mol (4191.0737 without restraints) Performing minimization step: 1598. Total energy = 4198.9989 kcal/mol (4188.9321 without restraints) Performing minimization step: 1599. Total energy = 4196.8538 kcal/mol (4186.7938 without restraints) Performing minimization step: 1600. Total energy = 4194.7120 kcal/mol (4184.6589 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 4192.5738 kcal/mol (4182.5272 without restraints) Performing minimization step: 1602. Total energy = 4190.4380 kcal/mol (4180.3982 without restraints) Performing minimization step: 1603. Total energy = 4188.3055 kcal/mol (4178.2724 without restraints) Performing minimization step: 1604. Total energy = 4186.1759 kcal/mol (4176.1495 without restraints) Performing minimization step: 1605. Total energy = 4184.0489 kcal/mol (4174.0292 without restraints) Performing minimization step: 1606. Total energy = 4181.9252 kcal/mol (4171.9123 without restraints) Performing minimization step: 1607. Total energy = 4179.8051 kcal/mol (4169.7988 without restraints) Performing minimization step: 1608. Total energy = 4177.6877 kcal/mol (4167.6882 without restraints) Performing minimization step: 1609. Total energy = 4175.5735 kcal/mol (4165.5806 without restraints) Performing minimization step: 1610. Total energy = 4173.4623 kcal/mol (4163.4761 without restraints) Performing minimization step: 1611. Total energy = 4171.3543 kcal/mol (4161.3748 without restraints) Performing minimization step: 1612. Total energy = 4169.2493 kcal/mol (4159.2765 without restraints) Performing minimization step: 1613. Total energy = 4167.1476 kcal/mol (4157.1815 without restraints) Performing minimization step: 1614. Total energy = 4165.0487 kcal/mol (4155.0893 without restraints) Performing minimization step: 1615. Total energy = 4162.9525 kcal/mol (4152.9998 without restraints) Performing minimization step: 1616. Total energy = 4160.8598 kcal/mol (4150.9137 without restraints) Performing minimization step: 1617. Total energy = 4158.7701 kcal/mol (4148.8307 without restraints) Performing minimization step: 1618. Total energy = 4156.6839 kcal/mol (4146.7511 without restraints) Performing minimization step: 1619. Total energy = 4154.6002 kcal/mol (4144.6741 without restraints) Performing minimization step: 1620. Total energy = 4152.5195 kcal/mol (4142.6001 without restraints) Performing minimization step: 1621. Total energy = 4150.4423 kcal/mol (4140.5295 without restraints) Performing minimization step: 1622. Total energy = 4148.3676 kcal/mol (4138.4615 without restraints) Performing minimization step: 1623. Total energy = 4146.2960 kcal/mol (4136.3965 without restraints) Performing minimization step: 1624. Total energy = 4144.2274 kcal/mol (4134.3345 without restraints) Performing minimization step: 1625. Total energy = 4142.1612 kcal/mol (4132.2750 without restraints) Performing minimization step: 1626. Total energy = 4140.0987 kcal/mol (4130.2191 without restraints) Performing minimization step: 1627. Total energy = 4138.0392 kcal/mol (4128.1663 without restraints) Performing minimization step: 1628. Total energy = 4135.9826 kcal/mol (4126.1163 without restraints) Performing minimization step: 1629. Total energy = 4133.9290 kcal/mol (4124.0693 without restraints) Performing minimization step: 1630. Total energy = 4131.8785 kcal/mol (4122.0254 without restraints) Performing minimization step: 1631. Total energy = 4129.8306 kcal/mol (4119.9841 without restraints) Performing minimization step: 1632. Total energy = 4127.7859 kcal/mol (4117.9460 without restraints) Performing minimization step: 1633. Total energy = 4125.7439 kcal/mol (4115.9106 without restraints) Performing minimization step: 1634. Total energy = 4123.7056 kcal/mol (4113.8789 without restraints) Performing minimization step: 1635. Total energy = 4121.6696 kcal/mol (4111.8496 without restraints) Performing minimization step: 1636. Total energy = 4119.6369 kcal/mol (4109.8234 without restraints) Performing minimization step: 1637. Total energy = 4117.6073 kcal/mol (4107.8004 without restraints) Performing minimization step: 1638. Total energy = 4115.5801 kcal/mol (4105.7797 without restraints) Performing minimization step: 1639. Total energy = 4113.5558 kcal/mol (4103.7620 without restraints) Performing minimization step: 1640. Total energy = 4111.5345 kcal/mol (4101.7474 without restraints) Performing minimization step: 1641. Total energy = 4109.5167 kcal/mol (4099.7361 without restraints) Performing minimization step: 1642. Total energy = 4107.5017 kcal/mol (4097.7276 without restraints) Performing minimization step: 1643. Total energy = 4105.4900 kcal/mol (4095.7225 without restraints) Performing minimization step: 1644. Total energy = 4103.4815 kcal/mol (4093.7206 without restraints) Performing minimization step: 1645. Total energy = 4101.4755 kcal/mol (4091.7213 without restraints) Performing minimization step: 1646. Total energy = 4099.4719 kcal/mol (4089.7242 without restraints) Performing minimization step: 1647. Total energy = 4097.4716 kcal/mol (4087.7303 without restraints) Performing minimization step: 1648. Total energy = 4095.4741 kcal/mol (4085.7393 without restraints) Performing minimization step: 1649. Total energy = 4093.4795 kcal/mol (4083.7513 without restraints) Performing minimization step: 1650. Total energy = 4091.4871 kcal/mol (4081.7654 without restraints) Performing minimization step: 1651. Total energy = 4089.4981 kcal/mol (4079.7830 without restraints) Performing minimization step: 1652. Total energy = 4087.5125 kcal/mol (4077.8039 without restraints) Performing minimization step: 1653. Total energy = 4085.5299 kcal/mol (4075.8279 without restraints) Performing minimization step: 1654. Total energy = 4083.5501 kcal/mol (4073.8546 without restraints) Performing minimization step: 1655. Total energy = 4081.5735 kcal/mol (4071.8845 without restraints) Performing minimization step: 1656. Total energy = 4079.5997 kcal/mol (4069.9171 without restraints) Performing minimization step: 1657. Total energy = 4077.6282 kcal/mol (4067.9522 without restraints) Performing minimization step: 1658. Total energy = 4075.6596 kcal/mol (4065.9901 without restraints) Performing minimization step: 1659. Total energy = 4073.6937 kcal/mol (4064.0307 without restraints) Performing minimization step: 1660. Total energy = 4071.7313 kcal/mol (4062.0750 without restraints) Performing minimization step: 1661. Total energy = 4069.7715 kcal/mol (4060.1214 without restraints) Performing minimization step: 1662. Total energy = 4067.8147 kcal/mol (4058.1710 without restraints) Performing minimization step: 1663. Total energy = 4065.8603 kcal/mol (4056.2232 without restraints) Performing minimization step: 1664. Total energy = 4063.9087 kcal/mol (4054.2781 without restraints) Performing minimization step: 1665. Total energy = 4061.9604 kcal/mol (4052.3363 without restraints) Performing minimization step: 1666. Total energy = 4060.0145 kcal/mol (4050.3967 without restraints) Performing minimization step: 1667. Total energy = 4058.0720 kcal/mol (4048.4609 without restraints) Performing minimization step: 1668. Total energy = 4056.1321 kcal/mol (4046.5274 without restraints) Performing minimization step: 1669. Total energy = 4054.1950 kcal/mol (4044.5970 without restraints) Performing minimization step: 1670. Total energy = 4052.2612 kcal/mol (4042.6693 without restraints) Performing minimization step: 1671. Total energy = 4050.3296 kcal/mol (4040.7442 without restraints) Performing minimization step: 1672. Total energy = 4048.4008 kcal/mol (4038.8218 without restraints) Performing minimization step: 1673. Total energy = 4046.4749 kcal/mol (4036.9024 without restraints) Performing minimization step: 1674. Total energy = 4044.5514 kcal/mol (4034.9853 without restraints) Performing minimization step: 1675. Total energy = 4042.6316 kcal/mol (4033.0721 without restraints) Performing minimization step: 1676. Total energy = 4040.7146 kcal/mol (4031.1614 without restraints) Performing minimization step: 1677. Total energy = 4038.8001 kcal/mol (4029.2534 without restraints) Performing minimization step: 1678. Total energy = 4036.8883 kcal/mol (4027.3479 without restraints) Performing minimization step: 1679. Total energy = 4034.9792 kcal/mol (4025.4452 without restraints) Performing minimization step: 1680. Total energy = 4033.0727 kcal/mol (4023.5452 without restraints) Performing minimization step: 1681. Total energy = 4031.1691 kcal/mol (4021.6478 without restraints) Performing minimization step: 1682. Total energy = 4029.2681 kcal/mol (4019.7533 without restraints) Performing minimization step: 1683. Total energy = 4027.3703 kcal/mol (4017.8619 without restraints) Performing minimization step: 1684. Total energy = 4025.4750 kcal/mol (4015.9730 without restraints) Performing minimization step: 1685. Total energy = 4023.5825 kcal/mol (4014.0869 without restraints) Performing minimization step: 1686. Total energy = 4021.6927 kcal/mol (4012.2035 without restraints) Performing minimization step: 1687. Total energy = 4019.8064 kcal/mol (4010.3236 without restraints) Performing minimization step: 1688. Total energy = 4017.9221 kcal/mol (4008.4457 without restraints) Performing minimization step: 1689. Total energy = 4016.0408 kcal/mol (4006.5707 without restraints) Performing minimization step: 1690. Total energy = 4014.1620 kcal/mol (4004.6983 without restraints) Performing minimization step: 1691. Total energy = 4012.2867 kcal/mol (4002.8293 without restraints) Performing minimization step: 1692. Total energy = 4010.4138 kcal/mol (4000.9628 without restraints) Performing minimization step: 1693. Total energy = 4008.5435 kcal/mol (3999.0990 without restraints) Performing minimization step: 1694. Total energy = 4006.6757 kcal/mol (3997.2374 without restraints) Performing minimization step: 1695. Total energy = 4004.8105 kcal/mol (3995.3786 without restraints) Performing minimization step: 1696. Total energy = 4002.9481 kcal/mol (3993.5226 without restraints) Performing minimization step: 1697. Total energy = 4001.0887 kcal/mol (3991.6695 without restraints) Performing minimization step: 1698. Total energy = 3999.2318 kcal/mol (3989.8189 without restraints) Performing minimization step: 1699. Total energy = 3997.3774 kcal/mol (3987.9708 without restraints) Performing minimization step: 1700. Total energy = 3995.5258 kcal/mol (3986.1255 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 3993.6772 kcal/mol (3984.2832 without restraints) Performing minimization step: 1702. Total energy = 3991.8311 kcal/mol (3982.4434 without restraints) Performing minimization step: 1703. Total energy = 3989.9879 kcal/mol (3980.6066 without restraints) Performing minimization step: 1704. Total energy = 3988.1471 kcal/mol (3978.7720 without restraints) Performing minimization step: 1705. Total energy = 3986.3089 kcal/mol (3976.9401 without restraints) Performing minimization step: 1706. Total energy = 3984.4732 kcal/mol (3975.1107 without restraints) Performing minimization step: 1707. Total energy = 3982.6401 kcal/mol (3973.2839 without restraints) Performing minimization step: 1708. Total energy = 3980.8102 kcal/mol (3971.4604 without restraints) Performing minimization step: 1709. Total energy = 3978.9828 kcal/mol (3969.6392 without restraints) Performing minimization step: 1710. Total energy = 3977.1580 kcal/mol (3967.8206 without restraints) Performing minimization step: 1711. Total energy = 3975.3360 kcal/mol (3966.0050 without restraints) Performing minimization step: 1712. Total energy = 3973.5166 kcal/mol (3964.1918 without restraints) Performing minimization step: 1713. Total energy = 3971.7000 kcal/mol (3962.3818 without restraints) Performing minimization step: 1714. Total energy = 3969.8865 kcal/mol (3960.5743 without restraints) Performing minimization step: 1715. Total energy = 3968.0754 kcal/mol (3958.7694 without restraints) Performing minimization step: 1716. Total energy = 3966.2667 kcal/mol (3956.9670 without restraints) Performing minimization step: 1717. Total energy = 3964.4608 kcal/mol (3955.1673 without restraints) Performing minimization step: 1718. Total energy = 3962.6572 kcal/mol (3953.3700 without restraints) Performing minimization step: 1719. Total energy = 3960.8567 kcal/mol (3951.5757 without restraints) Performing minimization step: 1720. Total energy = 3959.0583 kcal/mol (3949.7835 without restraints) Performing minimization step: 1721. Total energy = 3957.2623 kcal/mol (3947.9938 without restraints) Performing minimization step: 1722. Total energy = 3955.4691 kcal/mol (3946.2068 without restraints) Performing minimization step: 1723. Total energy = 3953.6788 kcal/mol (3944.4227 without restraints) Performing minimization step: 1724. Total energy = 3951.8908 kcal/mol (3942.6409 without restraints) Performing minimization step: 1725. Total energy = 3950.1058 kcal/mol (3940.8621 without restraints) Performing minimization step: 1726. Total energy = 3948.3231 kcal/mol (3939.0857 without restraints) Performing minimization step: 1727. Total energy = 3946.5430 kcal/mol (3937.3116 without restraints) Performing minimization step: 1728. Total energy = 3944.7652 kcal/mol (3935.5401 without restraints) Performing minimization step: 1729. Total energy = 3942.9902 kcal/mol (3933.7713 without restraints) Performing minimization step: 1730. Total energy = 3941.2177 kcal/mol (3932.0050 without restraints) Performing minimization step: 1731. Total energy = 3939.4484 kcal/mol (3930.2417 without restraints) Performing minimization step: 1732. Total energy = 3937.6813 kcal/mol (3928.4809 without restraints) Performing minimization step: 1733. Total energy = 3935.9164 kcal/mol (3926.7222 without restraints) Performing minimization step: 1734. Total energy = 3934.1542 kcal/mol (3924.9662 without restraints) Performing minimization step: 1735. Total energy = 3932.3948 kcal/mol (3923.2129 without restraints) Performing minimization step: 1736. Total energy = 3930.6377 kcal/mol (3921.4621 without restraints) Performing minimization step: 1737. Total energy = 3928.8833 kcal/mol (3919.7138 without restraints) Performing minimization step: 1738. Total energy = 3927.1314 kcal/mol (3917.9681 without restraints) Performing minimization step: 1739. Total energy = 3925.3823 kcal/mol (3916.2251 without restraints) Performing minimization step: 1740. Total energy = 3923.6358 kcal/mol (3914.4847 without restraints) Performing minimization step: 1741. Total energy = 3921.8917 kcal/mol (3912.7468 without restraints) Performing minimization step: 1742. Total energy = 3920.1502 kcal/mol (3911.0114 without restraints) Performing minimization step: 1743. Total energy = 3918.4110 kcal/mol (3909.2783 without restraints) Performing minimization step: 1744. Total energy = 3916.6743 kcal/mol (3907.5477 without restraints) Performing minimization step: 1745. Total energy = 3914.9401 kcal/mol (3905.8197 without restraints) Performing minimization step: 1746. Total energy = 3913.2088 kcal/mol (3904.0944 without restraints) Performing minimization step: 1747. Total energy = 3911.4796 kcal/mol (3902.3715 without restraints) Performing minimization step: 1748. Total energy = 3909.7526 kcal/mol (3900.6506 without restraints) Performing minimization step: 1749. Total energy = 3908.0287 kcal/mol (3898.9328 without restraints) Performing minimization step: 1750. Total energy = 3906.3073 kcal/mol (3897.2174 without restraints) Performing minimization step: 1751. Total energy = 3904.5881 kcal/mol (3895.5043 without restraints) Performing minimization step: 1752. Total energy = 3902.8715 kcal/mol (3893.7938 without restraints) Performing minimization step: 1753. Total energy = 3901.1574 kcal/mol (3892.0858 without restraints) Performing minimization step: 1754. Total energy = 3899.4458 kcal/mol (3890.3802 without restraints) Performing minimization step: 1755. Total energy = 3897.7372 kcal/mol (3888.6780 without restraints) Performing minimization step: 1756. Total energy = 3896.0309 kcal/mol (3886.9775 without restraints) Performing minimization step: 1757. Total energy = 3894.3270 kcal/mol (3885.2798 without restraints) Performing minimization step: 1758. Total energy = 3892.6254 kcal/mol (3883.5841 without restraints) Performing minimization step: 1759. Total energy = 3890.9261 kcal/mol (3881.8909 without restraints) Performing minimization step: 1760. Total energy = 3889.2294 kcal/mol (3880.2002 without restraints) Performing minimization step: 1761. Total energy = 3887.5346 kcal/mol (3878.5115 without restraints) Performing minimization step: 1762. Total energy = 3885.8430 kcal/mol (3876.8259 without restraints) Performing minimization step: 1763. Total energy = 3884.1536 kcal/mol (3875.1425 without restraints) Performing minimization step: 1764. Total energy = 3882.4664 kcal/mol (3873.4613 without restraints) Performing minimization step: 1765. Total energy = 3880.7821 kcal/mol (3871.7831 without restraints) Performing minimization step: 1766. Total energy = 3879.1000 kcal/mol (3870.1070 without restraints) Performing minimization step: 1767. Total energy = 3877.4205 kcal/mol (3868.4335 without restraints) Performing minimization step: 1768. Total energy = 3875.7433 kcal/mol (3866.7624 without restraints) Performing minimization step: 1769. Total energy = 3874.0686 kcal/mol (3865.0936 without restraints) Performing minimization step: 1770. Total energy = 3872.3961 kcal/mol (3863.4270 without restraints) Performing minimization step: 1771. Total energy = 3870.7259 kcal/mol (3861.7630 without restraints) Performing minimization step: 1772. Total energy = 3869.0583 kcal/mol (3860.1012 without restraints) Performing minimization step: 1773. Total energy = 3867.3931 kcal/mol (3858.4421 without restraints) Performing minimization step: 1774. Total energy = 3865.7305 kcal/mol (3856.7855 without restraints) Performing minimization step: 1775. Total energy = 3864.0702 kcal/mol (3855.1312 without restraints) Performing minimization step: 1776. Total energy = 3862.4121 kcal/mol (3853.4791 without restraints) Performing minimization step: 1777. Total energy = 3860.7567 kcal/mol (3851.8296 without restraints) Performing minimization step: 1778. Total energy = 3859.1038 kcal/mol (3850.1827 without restraints) Performing minimization step: 1779. Total energy = 3857.4531 kcal/mol (3848.5380 without restraints) Performing minimization step: 1780. Total energy = 3855.8046 kcal/mol (3846.8954 without restraints) Performing minimization step: 1781. Total energy = 3854.1589 kcal/mol (3845.2556 without restraints) Performing minimization step: 1782. Total energy = 3852.5149 kcal/mol (3843.6175 without restraints) Performing minimization step: 1783. Total energy = 3850.8741 kcal/mol (3841.9828 without restraints) Performing minimization step: 1784. Total energy = 3849.2354 kcal/mol (3840.3499 without restraints) Performing minimization step: 1785. Total energy = 3847.5994 kcal/mol (3838.7199 without restraints) Performing minimization step: 1786. Total energy = 3845.9653 kcal/mol (3837.0918 without restraints) Performing minimization step: 1787. Total energy = 3844.3341 kcal/mol (3835.4664 without restraints) Performing minimization step: 1788. Total energy = 3842.7047 kcal/mol (3833.8430 without restraints) Performing minimization step: 1789. Total energy = 3841.0782 kcal/mol (3832.2224 without restraints) Performing minimization step: 1790. Total energy = 3839.4530 kcal/mol (3830.6031 without restraints) Performing minimization step: 1791. Total energy = 3837.8308 kcal/mol (3828.9868 without restraints) Performing minimization step: 1792. Total energy = 3836.2114 kcal/mol (3827.3733 without restraints) Performing minimization step: 1793. Total energy = 3834.5940 kcal/mol (3825.7617 without restraints) Performing minimization step: 1794. Total energy = 3832.9790 kcal/mol (3824.1526 without restraints) Performing minimization step: 1795. Total energy = 3831.3666 kcal/mol (3822.5462 without restraints) Performing minimization step: 1796. Total energy = 3829.7561 kcal/mol (3820.9415 without restraints) Performing minimization step: 1797. Total energy = 3828.1477 kcal/mol (3819.3391 without restraints) Performing minimization step: 1798. Total energy = 3826.5424 kcal/mol (3817.7397 without restraints) Performing minimization step: 1799. Total energy = 3824.9390 kcal/mol (3816.1420 without restraints) Performing minimization step: 1800. Total energy = 3823.3379 kcal/mol (3814.5468 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 3821.7390 kcal/mol (3812.9537 without restraints) Performing minimization step: 1802. Total energy = 3820.1427 kcal/mol (3811.3633 without restraints) Performing minimization step: 1803. Total energy = 3818.5484 kcal/mol (3809.7748 without restraints) Performing minimization step: 1804. Total energy = 3816.9566 kcal/mol (3808.1888 without restraints) Performing minimization step: 1805. Total energy = 3815.3667 kcal/mol (3806.6048 without restraints) Performing minimization step: 1806. Total energy = 3813.7792 kcal/mol (3805.0232 without restraints) Performing minimization step: 1807. Total energy = 3812.1941 kcal/mol (3803.4438 without restraints) Performing minimization step: 1808. Total energy = 3810.6112 kcal/mol (3801.8667 without restraints) Performing minimization step: 1809. Total energy = 3809.0305 kcal/mol (3800.2919 without restraints) Performing minimization step: 1810. Total energy = 3807.4523 kcal/mol (3798.7195 without restraints) Performing minimization step: 1811. Total energy = 3805.8761 kcal/mol (3797.1490 without restraints) Performing minimization step: 1812. Total energy = 3804.3023 kcal/mol (3795.5810 without restraints) Performing minimization step: 1813. Total energy = 3802.7310 kcal/mol (3794.0156 without restraints) Performing minimization step: 1814. Total energy = 3801.1619 kcal/mol (3792.4522 without restraints) Performing minimization step: 1815. Total energy = 3799.5950 kcal/mol (3790.8911 without restraints) Performing minimization step: 1816. Total energy = 3798.0303 kcal/mol (3789.3322 without restraints) Performing minimization step: 1817. Total energy = 3796.4674 kcal/mol (3787.7751 without restraints) Performing minimization step: 1818. Total energy = 3794.9077 kcal/mol (3786.2211 without restraints) Performing minimization step: 1819. Total energy = 3793.3498 kcal/mol (3784.6690 without restraints) Performing minimization step: 1820. Total energy = 3791.7942 kcal/mol (3783.1192 without restraints) Performing minimization step: 1821. Total energy = 3790.2408 kcal/mol (3781.5715 without restraints) Performing minimization step: 1822. Total energy = 3788.6894 kcal/mol (3780.0259 without restraints) Performing minimization step: 1823. Total energy = 3787.1405 kcal/mol (3778.4826 without restraints) Performing minimization step: 1824. Total energy = 3785.5935 kcal/mol (3776.9414 without restraints) Performing minimization step: 1825. Total energy = 3784.0491 kcal/mol (3775.4028 without restraints) Performing minimization step: 1826. Total energy = 3782.5071 kcal/mol (3773.8665 without restraints) Performing minimization step: 1827. Total energy = 3780.9671 kcal/mol (3772.3323 without restraints) Performing minimization step: 1828. Total energy = 3779.4298 kcal/mol (3770.8007 without restraints) Performing minimization step: 1829. Total energy = 3777.8945 kcal/mol (3769.2712 without restraints) Performing minimization step: 1830. Total energy = 3776.3609 kcal/mol (3767.7432 without restraints) Performing minimization step: 1831. Total energy = 3774.8299 kcal/mol (3766.2179 without restraints) Performing minimization step: 1832. Total energy = 3773.3012 kcal/mol (3764.6949 without restraints) Performing minimization step: 1833. Total energy = 3771.7749 kcal/mol (3763.1743 without restraints) Performing minimization step: 1834. Total energy = 3770.2504 kcal/mol (3761.6555 without restraints) Performing minimization step: 1835. Total energy = 3768.7283 kcal/mol (3760.1391 without restraints) Performing minimization step: 1836. Total energy = 3767.2081 kcal/mol (3758.6247 without restraints) Performing minimization step: 1837. Total energy = 3765.6903 kcal/mol (3757.1124 without restraints) Performing minimization step: 1838. Total energy = 3764.1747 kcal/mol (3755.6025 without restraints) Performing minimization step: 1839. Total energy = 3762.6612 kcal/mol (3754.0947 without restraints) Performing minimization step: 1840. Total energy = 3761.1500 kcal/mol (3752.5891 without restraints) Performing minimization step: 1841. Total energy = 3759.6411 kcal/mol (3751.0858 without restraints) Performing minimization step: 1842. Total energy = 3758.1341 kcal/mol (3749.5846 without restraints) Performing minimization step: 1843. Total energy = 3756.6294 kcal/mol (3748.0854 without restraints) Performing minimization step: 1844. Total energy = 3755.1268 kcal/mol (3746.5886 without restraints) Performing minimization step: 1845. Total energy = 3753.6263 kcal/mol (3745.0936 without restraints) Performing minimization step: 1846. Total energy = 3752.1282 kcal/mol (3743.6012 without restraints) Performing minimization step: 1847. Total energy = 3750.6321 kcal/mol (3742.1107 without restraints) Performing minimization step: 1848. Total energy = 3749.1383 kcal/mol (3740.6225 without restraints) Performing minimization step: 1849. Total energy = 3747.6467 kcal/mol (3739.1366 without restraints) Performing minimization step: 1850. Total energy = 3746.1574 kcal/mol (3737.6529 without restraints) Performing minimization step: 1851. Total energy = 3744.6701 kcal/mol (3736.1713 without restraints) Performing minimization step: 1852. Total energy = 3743.1851 kcal/mol (3734.6918 without restraints) Performing minimization step: 1853. Total energy = 3741.7020 kcal/mol (3733.2143 without restraints) Performing minimization step: 1854. Total energy = 3740.2208 kcal/mol (3731.7386 without restraints) Performing minimization step: 1855. Total energy = 3738.7421 kcal/mol (3730.2656 without restraints) Performing minimization step: 1856. Total energy = 3737.2654 kcal/mol (3728.7945 without restraints) Performing minimization step: 1857. Total energy = 3735.7909 kcal/mol (3727.3255 without restraints) Performing minimization step: 1858. Total energy = 3734.3186 kcal/mol (3725.8587 without restraints) Performing minimization step: 1859. Total energy = 3732.8479 kcal/mol (3724.3937 without restraints) Performing minimization step: 1860. Total energy = 3731.3796 kcal/mol (3722.9309 without restraints) Performing minimization step: 1861. Total energy = 3729.9137 kcal/mol (3721.4705 without restraints) Performing minimization step: 1862. Total energy = 3728.4498 kcal/mol (3720.0122 without restraints) Performing minimization step: 1863. Total energy = 3726.9878 kcal/mol (3718.5560 without restraints) Performing minimization step: 1864. Total energy = 3725.5280 kcal/mol (3717.1015 without restraints) Performing minimization step: 1865. Total energy = 3724.0708 kcal/mol (3715.6498 without restraints) Performing minimization step: 1866. Total energy = 3722.6153 kcal/mol (3714.2000 without restraints) Performing minimization step: 1867. Total energy = 3721.1619 kcal/mol (3712.7520 without restraints) Performing minimization step: 1868. Total energy = 3719.7100 kcal/mol (3711.3057 without restraints) Performing minimization step: 1869. Total energy = 3718.2607 kcal/mol (3709.8619 without restraints) Performing minimization step: 1870. Total energy = 3716.8141 kcal/mol (3708.4206 without restraints) Performing minimization step: 1871. Total energy = 3715.3689 kcal/mol (3706.9810 without restraints) Performing minimization step: 1872. Total energy = 3713.9263 kcal/mol (3705.5440 without restraints) Performing minimization step: 1873. Total energy = 3712.4858 kcal/mol (3704.1090 without restraints) Performing minimization step: 1874. Total energy = 3711.0472 kcal/mol (3702.6759 without restraints) Performing minimization step: 1875. Total energy = 3709.6107 kcal/mol (3701.2450 without restraints) Performing minimization step: 1876. Total energy = 3708.1764 kcal/mol (3699.8162 without restraints) Performing minimization step: 1877. Total energy = 3706.7434 kcal/mol (3698.3885 without restraints) Performing minimization step: 1878. Total energy = 3705.3131 kcal/mol (3696.9636 without restraints) Performing minimization step: 1879. Total energy = 3703.8845 kcal/mol (3695.5406 without restraints) Performing minimization step: 1880. Total energy = 3702.4580 kcal/mol (3694.1194 without restraints) Performing minimization step: 1881. Total energy = 3701.0332 kcal/mol (3692.7000 without restraints) Performing minimization step: 1882. Total energy = 3699.6108 kcal/mol (3691.2832 without restraints) Performing minimization step: 1883. Total energy = 3698.1907 kcal/mol (3689.8685 without restraints) Performing minimization step: 1884. Total energy = 3696.7724 kcal/mol (3688.4556 without restraints) Performing minimization step: 1885. Total energy = 3695.3561 kcal/mol (3687.0448 without restraints) Performing minimization step: 1886. Total energy = 3693.9419 kcal/mol (3685.6361 without restraints) Performing minimization step: 1887. Total energy = 3692.5299 kcal/mol (3684.2295 without restraints) Performing minimization step: 1888. Total energy = 3691.1203 kcal/mol (3682.8256 without restraints) Performing minimization step: 1889. Total energy = 3689.7127 kcal/mol (3681.4231 without restraints) Performing minimization step: 1890. Total energy = 3688.3072 kcal/mol (3680.0231 without restraints) Performing minimization step: 1891. Total energy = 3686.9030 kcal/mol (3678.6243 without restraints) Performing minimization step: 1892. Total energy = 3685.5011 kcal/mol (3677.2277 without restraints) Performing minimization step: 1893. Total energy = 3684.1014 kcal/mol (3675.8334 without restraints) Performing minimization step: 1894. Total energy = 3682.7037 kcal/mol (3674.4411 without restraints) Performing minimization step: 1895. Total energy = 3681.3080 kcal/mol (3673.0508 without restraints) Performing minimization step: 1896. Total energy = 3679.9143 kcal/mol (3671.6625 without restraints) Performing minimization step: 1897. Total energy = 3678.5229 kcal/mol (3670.2764 without restraints) Performing minimization step: 1898. Total energy = 3677.1332 kcal/mol (3668.8922 without restraints) Performing minimization step: 1899. Total energy = 3675.7456 kcal/mol (3667.5099 without restraints) Performing minimization step: 1900. Total energy = 3674.3606 kcal/mol (3666.1305 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 3672.9774 kcal/mol (3664.7524 without restraints) Performing minimization step: 1902. Total energy = 3671.5960 kcal/mol (3663.3764 without restraints) Performing minimization step: 1903. Total energy = 3670.2165 kcal/mol (3662.0022 without restraints) Performing minimization step: 1904. Total energy = 3668.8388 kcal/mol (3660.6298 without restraints) Performing minimization step: 1905. Total energy = 3667.4633 kcal/mol (3659.2598 without restraints) Performing minimization step: 1906. Total energy = 3666.0904 kcal/mol (3657.8922 without restraints) Performing minimization step: 1907. Total energy = 3664.7190 kcal/mol (3656.5261 without restraints) Performing minimization step: 1908. Total energy = 3663.3494 kcal/mol (3655.1618 without restraints) Performing minimization step: 1909. Total energy = 3661.9818 kcal/mol (3653.7995 without restraints) Performing minimization step: 1910. Total energy = 3660.6163 kcal/mol (3652.4393 without restraints) Performing minimization step: 1911. Total energy = 3659.2525 kcal/mol (3651.0808 without restraints) Performing minimization step: 1912. Total energy = 3657.8908 kcal/mol (3649.7243 without restraints) Performing minimization step: 1913. Total energy = 3656.5311 kcal/mol (3648.3700 without restraints) Performing minimization step: 1914. Total energy = 3655.1737 kcal/mol (3647.0179 without restraints) Performing minimization step: 1915. Total energy = 3653.8184 kcal/mol (3645.6680 without restraints) Performing minimization step: 1916. Total energy = 3652.4648 kcal/mol (3644.3196 without restraints) Performing minimization step: 1917. Total energy = 3651.1131 kcal/mol (3642.9732 without restraints) Performing minimization step: 1918. Total energy = 3649.7633 kcal/mol (3641.6287 without restraints) Performing minimization step: 1919. Total energy = 3648.4153 kcal/mol (3640.2859 without restraints) Performing minimization step: 1920. Total energy = 3647.0693 kcal/mol (3638.9452 without restraints) Performing minimization step: 1921. Total energy = 3645.7255 kcal/mol (3637.6066 without restraints) Performing minimization step: 1922. Total energy = 3644.3836 kcal/mol (3636.2700 without restraints) Performing minimization step: 1923. Total energy = 3643.0436 kcal/mol (3634.9353 without restraints) Performing minimization step: 1924. Total energy = 3641.7059 kcal/mol (3633.6029 without restraints) Performing minimization step: 1925. Total energy = 3640.3699 kcal/mol (3632.2721 without restraints) Performing minimization step: 1926. Total energy = 3639.0359 kcal/mol (3630.9433 without restraints) Performing minimization step: 1927. Total energy = 3637.7035 kcal/mol (3629.6161 without restraints) Performing minimization step: 1928. Total energy = 3636.3734 kcal/mol (3628.2912 without restraints) Performing minimization step: 1929. Total energy = 3635.0451 kcal/mol (3626.9682 without restraints) Performing minimization step: 1930. Total energy = 3633.7187 kcal/mol (3625.6470 without restraints) Performing minimization step: 1931. Total energy = 3632.3943 kcal/mol (3624.3278 without restraints) Performing minimization step: 1932. Total energy = 3631.0719 kcal/mol (3623.0106 without restraints) Performing minimization step: 1933. Total energy = 3629.7514 kcal/mol (3621.6952 without restraints) Performing minimization step: 1934. Total energy = 3628.4322 kcal/mol (3620.3813 without restraints) Performing minimization step: 1935. Total energy = 3627.1153 kcal/mol (3619.0695 without restraints) Performing minimization step: 1936. Total energy = 3625.8006 kcal/mol (3617.7600 without restraints) Performing minimization step: 1937. Total energy = 3624.4878 kcal/mol (3616.4524 without restraints) Performing minimization step: 1938. Total energy = 3623.1768 kcal/mol (3615.1466 without restraints) Performing minimization step: 1939. Total energy = 3621.8682 kcal/mol (3613.8432 without restraints) Performing minimization step: 1940. Total energy = 3620.5613 kcal/mol (3612.5414 without restraints) Performing minimization step: 1941. Total energy = 3619.2562 kcal/mol (3611.2414 without restraints) Performing minimization step: 1942. Total energy = 3617.9533 kcal/mol (3609.9439 without restraints) Performing minimization step: 1943. Total energy = 3616.6521 kcal/mol (3608.6477 without restraints) Performing minimization step: 1944. Total energy = 3615.3525 kcal/mol (3607.3531 without restraints) Performing minimization step: 1945. Total energy = 3614.0549 kcal/mol (3606.0608 without restraints) Performing minimization step: 1946. Total energy = 3612.7593 kcal/mol (3604.7702 without restraints) Performing minimization step: 1947. Total energy = 3611.4658 kcal/mol (3603.4819 without restraints) Performing minimization step: 1948. Total energy = 3610.1739 kcal/mol (3602.1951 without restraints) Performing minimization step: 1949. Total energy = 3608.8836 kcal/mol (3600.9100 without restraints) Performing minimization step: 1950. Total energy = 3607.5956 kcal/mol (3599.6271 without restraints) Performing minimization step: 1951. Total energy = 3606.3097 kcal/mol (3598.3462 without restraints) Performing minimization step: 1952. Total energy = 3605.0255 kcal/mol (3597.0672 without restraints) Performing minimization step: 1953. Total energy = 3603.7429 kcal/mol (3595.7896 without restraints) Performing minimization step: 1954. Total energy = 3602.4625 kcal/mol (3594.5144 without restraints) Performing minimization step: 1955. Total energy = 3601.1843 kcal/mol (3593.2413 without restraints) Performing minimization step: 1956. Total energy = 3599.9079 kcal/mol (3591.9700 without restraints) Performing minimization step: 1957. Total energy = 3598.6332 kcal/mol (3590.7003 without restraints) Performing minimization step: 1958. Total energy = 3597.3604 kcal/mol (3589.4328 without restraints) Performing minimization step: 1959. Total energy = 3596.0898 kcal/mol (3588.1672 without restraints) Performing minimization step: 1960. Total energy = 3594.8204 kcal/mol (3586.9028 without restraints) Performing minimization step: 1961. Total energy = 3593.5532 kcal/mol (3585.6406 without restraints) Performing minimization step: 1962. Total energy = 3592.2880 kcal/mol (3584.3806 without restraints) Performing minimization step: 1963. Total energy = 3591.0246 kcal/mol (3583.1221 without restraints) Performing minimization step: 1964. Total energy = 3589.7627 kcal/mol (3581.8653 without restraints) Performing minimization step: 1965. Total energy = 3588.5028 kcal/mol (3580.6104 without restraints) Performing minimization step: 1966. Total energy = 3587.2452 kcal/mol (3579.3579 without restraints) Performing minimization step: 1967. Total energy = 3585.9888 kcal/mol (3578.1065 without restraints) Performing minimization step: 1968. Total energy = 3584.7348 kcal/mol (3576.8576 without restraints) Performing minimization step: 1969. Total energy = 3583.4825 kcal/mol (3575.6103 without restraints) Performing minimization step: 1970. Total energy = 3582.2319 kcal/mol (3574.3647 without restraints) Performing minimization step: 1971. Total energy = 3580.9829 kcal/mol (3573.1207 without restraints) Performing minimization step: 1972. Total energy = 3579.7365 kcal/mol (3571.8793 without restraints) Performing minimization step: 1973. Total energy = 3578.4914 kcal/mol (3570.6392 without restraints) Performing minimization step: 1974. Total energy = 3577.2484 kcal/mol (3569.4012 without restraints) Performing minimization step: 1975. Total energy = 3576.0072 kcal/mol (3568.1650 without restraints) Performing minimization step: 1976. Total energy = 3574.7678 kcal/mol (3566.9305 without restraints) Performing minimization step: 1977. Total energy = 3573.5302 kcal/mol (3565.6978 without restraints) Performing minimization step: 1978. Total energy = 3572.2939 kcal/mol (3564.4667 without restraints) Performing minimization step: 1979. Total energy = 3571.0606 kcal/mol (3563.2382 without restraints) Performing minimization step: 1980. Total energy = 3569.8284 kcal/mol (3562.0110 without restraints) Performing minimization step: 1981. Total energy = 3568.5982 kcal/mol (3560.7858 without restraints) Performing minimization step: 1982. Total energy = 3567.3698 kcal/mol (3559.5624 without restraints) Performing minimization step: 1983. Total energy = 3566.1437 kcal/mol (3558.3412 without restraints) Performing minimization step: 1984. Total energy = 3564.9188 kcal/mol (3557.1213 without restraints) Performing minimization step: 1985. Total energy = 3563.6958 kcal/mol (3555.9033 without restraints) Performing minimization step: 1986. Total energy = 3562.4750 kcal/mol (3554.6876 without restraints) Performing minimization step: 1987. Total energy = 3561.2558 kcal/mol (3553.4731 without restraints) Performing minimization step: 1988. Total energy = 3560.0381 kcal/mol (3552.2603 without restraints) Performing minimization step: 1989. Total energy = 3558.8227 kcal/mol (3551.0500 without restraints) Performing minimization step: 1990. Total energy = 3557.6090 kcal/mol (3549.8411 without restraints) Performing minimization step: 1991. Total energy = 3556.3969 kcal/mol (3548.6339 without restraints) Performing minimization step: 1992. Total energy = 3555.1868 kcal/mol (3547.4287 without restraints) Performing minimization step: 1993. Total energy = 3553.9788 kcal/mol (3546.2256 without restraints) Performing minimization step: 1994. Total energy = 3552.7722 kcal/mol (3545.0240 without restraints) Performing minimization step: 1995. Total energy = 3551.5673 kcal/mol (3543.8239 without restraints) Performing minimization step: 1996. Total energy = 3550.3643 kcal/mol (3542.6258 without restraints) Performing minimization step: 1997. Total energy = 3549.1632 kcal/mol (3541.4296 without restraints) Performing minimization step: 1998. Total energy = 3547.9640 kcal/mol (3540.2353 without restraints) Performing minimization step: 1999. Total energy = 3546.7662 kcal/mol (3539.0422 without restraints) Performing minimization step: 2000. Total energy = 3545.5702 kcal/mol (3537.8512 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 3544.3762 kcal/mol (3536.6621 without restraints) Performing minimization step: 2002. Total energy = 3543.1838 kcal/mol (3535.4746 without restraints) Performing minimization step: 2003. Total energy = 3541.9937 kcal/mol (3534.2893 without restraints) Performing minimization step: 2004. Total energy = 3540.8053 kcal/mol (3533.1057 without restraints) Performing minimization step: 2005. Total energy = 3539.6186 kcal/mol (3531.9240 without restraints) Performing minimization step: 2006. Total energy = 3538.4336 kcal/mol (3530.7437 without restraints) Performing minimization step: 2007. Total energy = 3537.2502 kcal/mol (3529.5651 without restraints) Performing minimization step: 2008. Total energy = 3536.0686 kcal/mol (3528.3884 without restraints) Performing minimization step: 2009. Total energy = 3534.8887 kcal/mol (3527.2134 without restraints) Performing minimization step: 2010. Total energy = 3533.7108 kcal/mol (3526.0403 without restraints) Performing minimization step: 2011. Total energy = 3532.5346 kcal/mol (3524.8689 without restraints) Performing minimization step: 2012. Total energy = 3531.3601 kcal/mol (3523.6991 without restraints) Performing minimization step: 2013. Total energy = 3530.1874 kcal/mol (3522.5313 without restraints) Performing minimization step: 2014. Total energy = 3529.0169 kcal/mol (3521.3656 without restraints) Performing minimization step: 2015. Total energy = 3527.8477 kcal/mol (3520.2012 without restraints) Performing minimization step: 2016. Total energy = 3526.6811 kcal/mol (3519.0394 without restraints) Performing minimization step: 2017. Total energy = 3525.5156 kcal/mol (3517.8787 without restraints) Performing minimization step: 2018. Total energy = 3524.3522 kcal/mol (3516.7201 without restraints) Performing minimization step: 2019. Total energy = 3523.1901 kcal/mol (3515.5629 without restraints) Performing minimization step: 2020. Total energy = 3522.0296 kcal/mol (3514.4071 without restraints) Performing minimization step: 2021. Total energy = 3520.8710 kcal/mol (3513.2533 without restraints) Performing minimization step: 2022. Total energy = 3519.7144 kcal/mol (3512.1014 without restraints) Performing minimization step: 2023. Total energy = 3518.5593 kcal/mol (3510.9511 without restraints) Performing minimization step: 2024. Total energy = 3517.4058 kcal/mol (3509.8024 without restraints) Performing minimization step: 2025. Total energy = 3516.2541 kcal/mol (3508.6554 without restraints) Performing minimization step: 2026. Total energy = 3515.1043 kcal/mol (3507.5104 without restraints) Performing minimization step: 2027. Total energy = 3513.9560 kcal/mol (3506.3667 without restraints) Performing minimization step: 2028. Total energy = 3512.8095 kcal/mol (3505.2251 without restraints) Performing minimization step: 2029. Total energy = 3511.6649 kcal/mol (3504.0852 without restraints) Performing minimization step: 2030. Total energy = 3510.5221 kcal/mol (3502.9471 without restraints) Performing minimization step: 2031. Total energy = 3509.3814 kcal/mol (3501.8112 without restraints) Performing minimization step: 2032. Total energy = 3508.2421 kcal/mol (3500.6765 without restraints) Performing minimization step: 2033. Total energy = 3507.1046 kcal/mol (3499.5437 without restraints) Performing minimization step: 2034. Total energy = 3505.9687 kcal/mol (3498.4127 without restraints) Performing minimization step: 2035. Total energy = 3504.8344 kcal/mol (3497.2829 without restraints) Performing minimization step: 2036. Total energy = 3503.7018 kcal/mol (3496.1551 without restraints) Performing minimization step: 2037. Total energy = 3502.5714 kcal/mol (3495.0294 without restraints) Performing minimization step: 2038. Total energy = 3501.4425 kcal/mol (3493.9052 without restraints) Performing minimization step: 2039. Total energy = 3500.3158 kcal/mol (3492.7832 without restraints) Performing minimization step: 2040. Total energy = 3499.1906 kcal/mol (3491.6629 without restraints) Performing minimization step: 2041. Total energy = 3498.0670 kcal/mol (3490.5437 without restraints) Performing minimization step: 2042. Total energy = 3496.9449 kcal/mol (3489.4263 without restraints) Performing minimization step: 2043. Total energy = 3495.8241 kcal/mol (3488.3101 without restraints) Performing minimization step: 2044. Total energy = 3494.7052 kcal/mol (3487.1961 without restraints) Performing minimization step: 2045. Total energy = 3493.5885 kcal/mol (3486.0840 without restraints) Performing minimization step: 2046. Total energy = 3492.4733 kcal/mol (3484.9733 without restraints) Performing minimization step: 2047. Total energy = 3491.3598 kcal/mol (3483.8644 without restraints) Performing minimization step: 2048. Total energy = 3490.2476 kcal/mol (3482.7570 without restraints) Performing minimization step: 2049. Total energy = 3489.1375 kcal/mol (3481.6515 without restraints) Performing minimization step: 2050. Total energy = 3488.0289 kcal/mol (3480.5475 without restraints) Performing minimization step: 2051. Total energy = 3486.9221 kcal/mol (3479.4454 without restraints) Performing minimization step: 2052. Total energy = 3485.8172 kcal/mol (3478.3453 without restraints) Performing minimization step: 2053. Total energy = 3484.7141 kcal/mol (3477.2466 without restraints) Performing minimization step: 2054. Total energy = 3483.6123 kcal/mol (3476.1494 without restraints) Performing minimization step: 2055. Total energy = 3482.5120 kcal/mol (3475.0538 without restraints) Performing minimization step: 2056. Total energy = 3481.4140 kcal/mol (3473.9604 without restraints) Performing minimization step: 2057. Total energy = 3480.3175 kcal/mol (3472.8684 without restraints) Performing minimization step: 2058. Total energy = 3479.2225 kcal/mol (3471.7781 without restraints) Performing minimization step: 2059. Total energy = 3478.1289 kcal/mol (3470.6891 without restraints) Performing minimization step: 2060. Total energy = 3477.0374 kcal/mol (3469.6022 without restraints) Performing minimization step: 2061. Total energy = 3475.9477 kcal/mol (3468.5172 without restraints) Performing minimization step: 2062. Total energy = 3474.8595 kcal/mol (3467.4334 without restraints) Performing minimization step: 2063. Total energy = 3473.7730 kcal/mol (3466.3515 without restraints) Performing minimization step: 2064. Total energy = 3472.6877 kcal/mol (3465.2707 without restraints) Performing minimization step: 2065. Total energy = 3471.6045 kcal/mol (3464.1922 without restraints) Performing minimization step: 2066. Total energy = 3470.5232 kcal/mol (3463.1155 without restraints) Performing minimization step: 2067. Total energy = 3469.4435 kcal/mol (3462.0402 without restraints) Performing minimization step: 2068. Total energy = 3468.3651 kcal/mol (3460.9665 without restraints) Performing minimization step: 2069. Total energy = 3467.2884 kcal/mol (3459.8943 without restraints) Performing minimization step: 2070. Total energy = 3466.2137 kcal/mol (3458.8243 without restraints) Performing minimization step: 2071. Total energy = 3465.1408 kcal/mol (3457.7558 without restraints) Performing minimization step: 2072. Total energy = 3464.0695 kcal/mol (3456.6889 without restraints) Performing minimization step: 2073. Total energy = 3462.9997 kcal/mol (3455.6236 without restraints) Performing minimization step: 2074. Total energy = 3461.9318 kcal/mol (3454.5603 without restraints) Performing minimization step: 2075. Total energy = 3460.8652 kcal/mol (3453.4983 without restraints) Performing minimization step: 2076. Total energy = 3459.8003 kcal/mol (3452.4379 without restraints) Performing minimization step: 2077. Total energy = 3458.7371 kcal/mol (3451.3792 without restraints) Performing minimization step: 2078. Total energy = 3457.6757 kcal/mol (3450.3223 without restraints) Performing minimization step: 2079. Total energy = 3456.6162 kcal/mol (3449.2673 without restraints) Performing minimization step: 2080. Total energy = 3455.5578 kcal/mol (3448.2134 without restraints) Performing minimization step: 2081. Total energy = 3454.5014 kcal/mol (3447.1615 without restraints) Performing minimization step: 2082. Total energy = 3453.4464 kcal/mol (3446.1109 without restraints) Performing minimization step: 2083. Total energy = 3452.3928 kcal/mol (3445.0619 without restraints) Performing minimization step: 2084. Total energy = 3451.3413 kcal/mol (3444.0149 without restraints) Performing minimization step: 2085. Total energy = 3450.2910 kcal/mol (3442.9692 without restraints) Performing minimization step: 2086. Total energy = 3449.2432 kcal/mol (3441.9257 without restraints) Performing minimization step: 2087. Total energy = 3448.1965 kcal/mol (3440.8835 without restraints) Performing minimization step: 2088. Total energy = 3447.1514 kcal/mol (3439.8429 without restraints) Performing minimization step: 2089. Total energy = 3446.1080 kcal/mol (3438.8039 without restraints) Performing minimization step: 2090. Total energy = 3445.0664 kcal/mol (3437.7668 without restraints) Performing minimization step: 2091. Total energy = 3444.0262 kcal/mol (3436.7310 without restraints) Performing minimization step: 2092. Total energy = 3442.9876 kcal/mol (3435.6969 without restraints) Performing minimization step: 2093. Total energy = 3441.9508 kcal/mol (3434.6645 without restraints) Performing minimization step: 2094. Total energy = 3440.9157 kcal/mol (3433.6338 without restraints) Performing minimization step: 2095. Total energy = 3439.8822 kcal/mol (3432.6048 without restraints) Performing minimization step: 2096. Total energy = 3438.8501 kcal/mol (3431.5772 without restraints) Performing minimization step: 2097. Total energy = 3437.8198 kcal/mol (3430.5513 without restraints) Performing minimization step: 2098. Total energy = 3436.7910 kcal/mol (3429.5268 without restraints) Performing minimization step: 2099. Total energy = 3435.7641 kcal/mol (3428.5043 without restraints) Performing minimization step: 2100. Total energy = 3434.7384 kcal/mol (3427.4829 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 3433.7150 kcal/mol (3426.4641 without restraints) Performing minimization step: 2102. Total energy = 3432.6923 kcal/mol (3425.4459 without restraints) Performing minimization step: 2103. Total energy = 3431.6714 kcal/mol (3424.4291 without restraints) Performing minimization step: 2104. Total energy = 3430.6520 kcal/mol (3423.4143 without restraints) Performing minimization step: 2105. Total energy = 3429.6344 kcal/mol (3422.4011 without restraints) Performing minimization step: 2106. Total energy = 3428.6185 kcal/mol (3421.3895 without restraints) Performing minimization step: 2107. Total energy = 3427.6039 kcal/mol (3420.3793 without restraints) Performing minimization step: 2108. Total energy = 3426.5914 kcal/mol (3419.3714 without restraints) Performing minimization step: 2109. Total energy = 3425.5804 kcal/mol (3418.3646 without restraints) Performing minimization step: 2110. Total energy = 3424.5709 kcal/mol (3417.3594 without restraints) Performing minimization step: 2111. Total energy = 3423.5635 kcal/mol (3416.3565 without restraints) Performing minimization step: 2112. Total energy = 3422.5572 kcal/mol (3415.3544 without restraints) Performing minimization step: 2113. Total energy = 3421.5522 kcal/mol (3414.3538 without restraints) Performing minimization step: 2114. Total energy = 3420.5488 kcal/mol (3413.3547 without restraints) Performing minimization step: 2115. Total energy = 3419.5476 kcal/mol (3412.3579 without restraints) Performing minimization step: 2116. Total energy = 3418.5474 kcal/mol (3411.3620 without restraints) Performing minimization step: 2117. Total energy = 3417.5488 kcal/mol (3410.3677 without restraints) Performing minimization step: 2118. Total energy = 3416.5518 kcal/mol (3409.3751 without restraints) Performing minimization step: 2119. Total energy = 3415.5568 kcal/mol (3408.3844 without restraints) Performing minimization step: 2120. Total energy = 3414.5630 kcal/mol (3407.3949 without restraints) Performing minimization step: 2121. Total energy = 3413.5713 kcal/mol (3406.4075 without restraints) Performing minimization step: 2122. Total energy = 3412.5807 kcal/mol (3405.4213 without restraints) Performing minimization step: 2123. Total energy = 3411.5918 kcal/mol (3404.4366 without restraints) Performing minimization step: 2124. Total energy = 3410.6042 kcal/mol (3403.4534 without restraints) Performing minimization step: 2125. Total energy = 3409.6184 kcal/mol (3402.4719 without restraints) Performing minimization step: 2126. Total energy = 3408.6342 kcal/mol (3401.4919 without restraints) Performing minimization step: 2127. Total energy = 3407.6515 kcal/mol (3400.5136 without restraints) Performing minimization step: 2128. Total energy = 3406.6703 kcal/mol (3399.5366 without restraints) Performing minimization step: 2129. Total energy = 3405.6906 kcal/mol (3398.5610 without restraints) Performing minimization step: 2130. Total energy = 3404.7123 kcal/mol (3397.5871 without restraints) Performing minimization step: 2131. Total energy = 3403.7358 kcal/mol (3396.6149 without restraints) Performing minimization step: 2132. Total energy = 3402.7619 kcal/mol (3395.6457 without restraints) Performing minimization step: 2133. Total energy = 3401.7890 kcal/mol (3394.6767 without restraints) Performing minimization step: 2134. Total energy = 3400.8171 kcal/mol (3393.7090 without restraints) Performing minimization step: 2135. Total energy = 3399.8469 kcal/mol (3392.7431 without restraints) Performing minimization step: 2136. Total energy = 3398.8783 kcal/mol (3391.7788 without restraints) Performing minimization step: 2137. Total energy = 3397.9113 kcal/mol (3390.8161 without restraints) Performing minimization step: 2138. Total energy = 3396.9463 kcal/mol (3389.8552 without restraints) Performing minimization step: 2139. Total energy = 3395.9823 kcal/mol (3388.8955 without restraints) Performing minimization step: 2140. Total energy = 3395.0199 kcal/mol (3387.9372 without restraints) Performing minimization step: 2141. Total energy = 3394.0588 kcal/mol (3386.9803 without restraints) Performing minimization step: 2142. Total energy = 3393.0994 kcal/mol (3386.0252 without restraints) Performing minimization step: 2143. Total energy = 3392.1418 kcal/mol (3385.0719 without restraints) Performing minimization step: 2144. Total energy = 3391.1858 kcal/mol (3384.1201 without restraints) Performing minimization step: 2145. Total energy = 3390.2311 kcal/mol (3383.1696 without restraints) Performing minimization step: 2146. Total energy = 3389.2780 kcal/mol (3382.2208 without restraints) Performing minimization step: 2147. Total energy = 3388.3267 kcal/mol (3381.2736 without restraints) Performing minimization step: 2148. Total energy = 3387.3765 kcal/mol (3380.3276 without restraints) Performing minimization step: 2149. Total energy = 3386.4281 kcal/mol (3379.3834 without restraints) Performing minimization step: 2150. Total energy = 3385.4807 kcal/mol (3378.4402 without restraints) Performing minimization step: 2151. Total energy = 3384.5357 kcal/mol (3377.4995 without restraints) Performing minimization step: 2152. Total energy = 3383.5924 kcal/mol (3376.5604 without restraints) Performing minimization step: 2153. Total energy = 3382.6503 kcal/mol (3375.6225 without restraints) Performing minimization step: 2154. Total energy = 3381.7093 kcal/mol (3374.6856 without restraints) Performing minimization step: 2155. Total energy = 3380.7699 kcal/mol (3373.7503 without restraints) Performing minimization step: 2156. Total energy = 3379.8326 kcal/mol (3372.8173 without restraints) Performing minimization step: 2157. Total energy = 3378.8964 kcal/mol (3371.8850 without restraints) Performing minimization step: 2158. Total energy = 3377.9616 kcal/mol (3370.9545 without restraints) Performing minimization step: 2159. Total energy = 3377.0283 kcal/mol (3370.0253 without restraints) Performing minimization step: 2160. Total energy = 3376.0969 kcal/mol (3369.0982 without restraints) Performing minimization step: 2161. Total energy = 3375.1666 kcal/mol (3368.1719 without restraints) Performing minimization step: 2162. Total energy = 3374.2380 kcal/mol (3367.2476 without restraints) Performing minimization step: 2163. Total energy = 3373.3109 kcal/mol (3366.3245 without restraints) Performing minimization step: 2164. Total energy = 3372.3854 kcal/mol (3365.4032 without restraints) Performing minimization step: 2165. Total energy = 3371.4608 kcal/mol (3364.4827 without restraints) Performing minimization step: 2166. Total energy = 3370.5381 kcal/mol (3363.5640 without restraints) Performing minimization step: 2167. Total energy = 3369.6172 kcal/mol (3362.6473 without restraints) Performing minimization step: 2168. Total energy = 3368.6975 kcal/mol (3361.7317 without restraints) Performing minimization step: 2169. Total energy = 3367.7794 kcal/mol (3360.8178 without restraints) Performing minimization step: 2170. Total energy = 3366.8624 kcal/mol (3359.9048 without restraints) Performing minimization step: 2171. Total energy = 3365.9469 kcal/mol (3358.9934 without restraints) Performing minimization step: 2172. Total energy = 3365.0333 kcal/mol (3358.0839 without restraints) Performing minimization step: 2173. Total energy = 3364.1213 kcal/mol (3357.1761 without restraints) Performing minimization step: 2174. Total energy = 3363.2106 kcal/mol (3356.2693 without restraints) Performing minimization step: 2175. Total energy = 3362.3011 kcal/mol (3355.3640 without restraints) Performing minimization step: 2176. Total energy = 3361.3933 kcal/mol (3354.4603 without restraints) Performing minimization step: 2177. Total energy = 3360.4870 kcal/mol (3353.5581 without restraints) Performing minimization step: 2178. Total energy = 3359.5825 kcal/mol (3352.6576 without restraints) Performing minimization step: 2179. Total energy = 3358.6794 kcal/mol (3351.7585 without restraints) Performing minimization step: 2180. Total energy = 3357.7782 kcal/mol (3350.8613 without restraints) Performing minimization step: 2181. Total energy = 3356.8776 kcal/mol (3349.9649 without restraints) Performing minimization step: 2182. Total energy = 3355.9792 kcal/mol (3349.0706 without restraints) Performing minimization step: 2183. Total energy = 3355.0818 kcal/mol (3348.1772 without restraints) Performing minimization step: 2184. Total energy = 3354.1869 kcal/mol (3347.2863 without restraints) Performing minimization step: 2185. Total energy = 3353.2925 kcal/mol (3346.3960 without restraints) Performing minimization step: 2186. Total energy = 3352.3995 kcal/mol (3345.5070 without restraints) Performing minimization step: 2187. Total energy = 3351.5080 kcal/mol (3344.6196 without restraints) Performing minimization step: 2188. Total energy = 3350.6180 kcal/mol (3343.7336 without restraints) Performing minimization step: 2189. Total energy = 3349.7294 kcal/mol (3342.8491 without restraints) Performing minimization step: 2190. Total energy = 3348.8423 kcal/mol (3341.9660 without restraints) Performing minimization step: 2191. Total energy = 3347.9567 kcal/mol (3341.0844 without restraints) Performing minimization step: 2192. Total energy = 3347.0727 kcal/mol (3340.2044 without restraints) Performing minimization step: 2193. Total energy = 3346.1904 kcal/mol (3339.3261 without restraints) Performing minimization step: 2194. Total energy = 3345.3091 kcal/mol (3338.4488 without restraints) Performing minimization step: 2195. Total energy = 3344.4289 kcal/mol (3337.5726 without restraints) Performing minimization step: 2196. Total energy = 3343.5508 kcal/mol (3336.6985 without restraints) Performing minimization step: 2197. Total energy = 3342.6740 kcal/mol (3335.8257 without restraints) Performing minimization step: 2198. Total energy = 3341.7989 kcal/mol (3334.9546 without restraints) Performing minimization step: 2199. Total energy = 3340.9247 kcal/mol (3334.0843 without restraints) Performing minimization step: 2200. Total energy = 3340.0521 kcal/mol (3333.2157 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 3339.1808 kcal/mol (3332.3484 without restraints) Performing minimization step: 2202. Total energy = 3338.3115 kcal/mol (3331.4831 without restraints) Performing minimization step: 2203. Total energy = 3337.4433 kcal/mol (3330.6188 without restraints) Performing minimization step: 2204. Total energy = 3336.5761 kcal/mol (3329.7555 without restraints) Performing minimization step: 2205. Total energy = 3335.7105 kcal/mol (3328.8939 without restraints) Performing minimization step: 2206. Total energy = 3334.8468 kcal/mol (3328.0342 without restraints) Performing minimization step: 2207. Total energy = 3333.9842 kcal/mol (3327.1756 without restraints) Performing minimization step: 2208. Total energy = 3333.1237 kcal/mol (3326.3190 without restraints) Performing minimization step: 2209. Total energy = 3332.2642 kcal/mol (3325.4634 without restraints) Performing minimization step: 2210. Total energy = 3331.4063 kcal/mol (3324.6094 without restraints) Performing minimization step: 2211. Total energy = 3330.5498 kcal/mol (3323.7569 without restraints) Performing minimization step: 2212. Total energy = 3329.6944 kcal/mol (3322.9053 without restraints) Performing minimization step: 2213. Total energy = 3328.8403 kcal/mol (3322.0553 without restraints) Performing minimization step: 2214. Total energy = 3327.9880 kcal/mol (3321.2070 without restraints) Performing minimization step: 2215. Total energy = 3327.1373 kcal/mol (3320.3601 without restraints) Performing minimization step: 2216. Total energy = 3326.2875 kcal/mol (3319.5142 without restraints) Performing minimization step: 2217. Total energy = 3325.4397 kcal/mol (3318.6704 without restraints) Performing minimization step: 2218. Total energy = 3324.5930 kcal/mol (3317.8275 without restraints) Performing minimization step: 2219. Total energy = 3323.7478 kcal/mol (3316.9863 without restraints) Performing minimization step: 2220. Total energy = 3322.9040 kcal/mol (3316.1463 without restraints) Performing minimization step: 2221. Total energy = 3322.0618 kcal/mol (3315.3080 without restraints) Performing minimization step: 2222. Total energy = 3321.2210 kcal/mol (3314.4711 without restraints) Performing minimization step: 2223. Total energy = 3320.3813 kcal/mol (3313.6353 without restraints) Performing minimization step: 2224. Total energy = 3319.5431 kcal/mol (3312.8009 without restraints) Performing minimization step: 2225. Total energy = 3318.7065 kcal/mol (3311.9682 without restraints) Performing minimization step: 2226. Total energy = 3317.8713 kcal/mol (3311.1369 without restraints) Performing minimization step: 2227. Total energy = 3317.0377 kcal/mol (3310.3071 without restraints) Performing minimization step: 2228. Total energy = 3316.2052 kcal/mol (3309.4786 without restraints) Performing minimization step: 2229. Total energy = 3315.3740 kcal/mol (3308.6512 without restraints) Performing minimization step: 2230. Total energy = 3314.5438 kcal/mol (3307.8249 without restraints) Performing minimization step: 2231. Total energy = 3313.7156 kcal/mol (3307.0007 without restraints) Performing minimization step: 2232. Total energy = 3312.8887 kcal/mol (3306.1774 without restraints) Performing minimization step: 2233. Total energy = 3312.0630 kcal/mol (3305.3555 without restraints) Performing minimization step: 2234. Total energy = 3311.2388 kcal/mol (3304.5352 without restraints) Performing minimization step: 2235. Total energy = 3310.4157 kcal/mol (3303.7159 without restraints) Performing minimization step: 2236. Total energy = 3309.5943 kcal/mol (3302.8984 without restraints) Performing minimization step: 2237. Total energy = 3308.7736 kcal/mol (3302.0814 without restraints) Performing minimization step: 2238. Total energy = 3307.9554 kcal/mol (3301.2672 without restraints) Performing minimization step: 2239. Total energy = 3307.1381 kcal/mol (3300.4537 without restraints) Performing minimization step: 2240. Total energy = 3306.3221 kcal/mol (3299.6415 without restraints) Performing minimization step: 2241. Total energy = 3305.5079 kcal/mol (3298.8311 without restraints) Performing minimization step: 2242. Total energy = 3304.6946 kcal/mol (3298.0216 without restraints) Performing minimization step: 2243. Total energy = 3303.8825 kcal/mol (3297.2133 without restraints) Performing minimization step: 2244. Total energy = 3303.0717 kcal/mol (3296.4061 without restraints) Performing minimization step: 2245. Total energy = 3302.2623 kcal/mol (3295.6008 without restraints) Performing minimization step: 2246. Total energy = 3301.4545 kcal/mol (3294.7966 without restraints) Performing minimization step: 2247. Total energy = 3300.6480 kcal/mol (3293.9938 without restraints) Performing minimization step: 2248. Total energy = 3299.8430 kcal/mol (3293.1927 without restraints) Performing minimization step: 2249. Total energy = 3299.0390 kcal/mol (3292.3925 without restraints) Performing minimization step: 2250. Total energy = 3298.2365 kcal/mol (3291.5938 without restraints) Performing minimization step: 2251. Total energy = 3297.4353 kcal/mol (3290.7964 without restraints) Performing minimization step: 2252. Total energy = 3296.6358 kcal/mol (3290.0007 without restraints) Performing minimization step: 2253. Total energy = 3295.8378 kcal/mol (3289.2064 without restraints) Performing minimization step: 2254. Total energy = 3295.0408 kcal/mol (3288.4131 without restraints) Performing minimization step: 2255. Total energy = 3294.2448 kcal/mol (3287.6208 without restraints) Performing minimization step: 2256. Total energy = 3293.4504 kcal/mol (3286.8302 without restraints) Performing minimization step: 2257. Total energy = 3292.6572 kcal/mol (3286.0408 without restraints) Performing minimization step: 2258. Total energy = 3291.8658 kcal/mol (3285.2534 without restraints) Performing minimization step: 2259. Total energy = 3291.0760 kcal/mol (3284.4671 without restraints) Performing minimization step: 2260. Total energy = 3290.2872 kcal/mol (3283.6820 without restraints) Performing minimization step: 2261. Total energy = 3289.4996 kcal/mol (3282.8982 without restraints) Performing minimization step: 2262. Total energy = 3288.7135 kcal/mol (3282.1158 without restraints) Performing minimization step: 2263. Total energy = 3287.9288 kcal/mol (3281.3347 without restraints) Performing minimization step: 2264. Total energy = 3287.1450 kcal/mol (3280.5545 without restraints) Performing minimization step: 2265. Total energy = 3286.3629 kcal/mol (3279.7763 without restraints) Performing minimization step: 2266. Total energy = 3285.5822 kcal/mol (3278.9993 without restraints) Performing minimization step: 2267. Total energy = 3284.8026 kcal/mol (3278.2234 without restraints) Performing minimization step: 2268. Total energy = 3284.0238 kcal/mol (3277.4483 without restraints) Performing minimization step: 2269. Total energy = 3283.2466 kcal/mol (3276.6748 without restraints) Performing minimization step: 2270. Total energy = 3282.4711 kcal/mol (3275.9030 without restraints) Performing minimization step: 2271. Total energy = 3281.6970 kcal/mol (3275.1325 without restraints) Performing minimization step: 2272. Total energy = 3280.9240 kcal/mol (3274.3633 without restraints) Performing minimization step: 2273. Total energy = 3280.1526 kcal/mol (3273.5956 without restraints) Performing minimization step: 2274. Total energy = 3279.3823 kcal/mol (3272.8289 without restraints) Performing minimization step: 2275. Total energy = 3278.6130 kcal/mol (3272.0634 without restraints) Performing minimization step: 2276. Total energy = 3277.8455 kcal/mol (3271.2996 without restraints) Performing minimization step: 2277. Total energy = 3277.0789 kcal/mol (3270.5365 without restraints) Performing minimization step: 2278. Total energy = 3276.3137 kcal/mol (3269.7750 without restraints) Performing minimization step: 2279. Total energy = 3275.5498 kcal/mol (3269.0147 without restraints) Performing minimization step: 2280. Total energy = 3274.7876 kcal/mol (3268.2562 without restraints) Performing minimization step: 2281. Total energy = 3274.0262 kcal/mol (3267.4985 without restraints) Performing minimization step: 2282. Total energy = 3273.2663 kcal/mol (3266.7423 without restraints) Performing minimization step: 2283. Total energy = 3272.5075 kcal/mol (3265.9870 without restraints) Performing minimization step: 2284. Total energy = 3271.7501 kcal/mol (3265.2334 without restraints) Performing minimization step: 2285. Total energy = 3270.9944 kcal/mol (3264.4813 without restraints) Performing minimization step: 2286. Total energy = 3270.2393 kcal/mol (3263.7298 without restraints) Performing minimization step: 2287. Total energy = 3269.4856 kcal/mol (3262.9797 without restraints) Performing minimization step: 2288. Total energy = 3268.7334 kcal/mol (3262.2310 without restraints) Performing minimization step: 2289. Total energy = 3267.9825 kcal/mol (3261.4837 without restraints) Performing minimization step: 2290. Total energy = 3267.2330 kcal/mol (3260.7378 without restraints) Performing minimization step: 2291. Total energy = 3266.4842 kcal/mol (3259.9927 without restraints) Performing minimization step: 2292. Total energy = 3265.7370 kcal/mol (3259.2490 without restraints) Performing minimization step: 2293. Total energy = 3264.9911 kcal/mol (3258.5068 without restraints) Performing minimization step: 2294. Total energy = 3264.2461 kcal/mol (3257.7652 without restraints) Performing minimization step: 2295. Total energy = 3263.5025 kcal/mol (3257.0253 without restraints) Performing minimization step: 2296. Total energy = 3262.7608 kcal/mol (3256.2873 without restraints) Performing minimization step: 2297. Total energy = 3262.0199 kcal/mol (3255.5500 without restraints) Performing minimization step: 2298. Total energy = 3261.2803 kcal/mol (3254.8139 without restraints) Performing minimization step: 2299. Total energy = 3260.5424 kcal/mol (3254.0797 without restraints) Performing minimization step: 2300. Total energy = 3259.8053 kcal/mol (3253.3460 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 3259.0694 kcal/mol (3252.6138 without restraints) Performing minimization step: 2302. Total energy = 3258.3350 kcal/mol (3251.8829 without restraints) Performing minimization step: 2303. Total energy = 3257.6021 kcal/mol (3251.1535 without restraints) Performing minimization step: 2304. Total energy = 3256.8696 kcal/mol (3250.4246 without restraints) Performing minimization step: 2305. Total energy = 3256.1389 kcal/mol (3249.6974 without restraints) Performing minimization step: 2306. Total energy = 3255.4091 kcal/mol (3248.9711 without restraints) Performing minimization step: 2307. Total energy = 3254.6804 kcal/mol (3248.2460 without restraints) Performing minimization step: 2308. Total energy = 3253.9533 kcal/mol (3247.5225 without restraints) Performing minimization step: 2309. Total energy = 3253.2273 kcal/mol (3246.8000 without restraints) Performing minimization step: 2310. Total energy = 3252.5023 kcal/mol (3246.0785 without restraints) Performing minimization step: 2311. Total energy = 3251.7792 kcal/mol (3245.3589 without restraints) Performing minimization step: 2312. Total energy = 3251.0568 kcal/mol (3244.6400 without restraints) Performing minimization step: 2313. Total energy = 3250.3352 kcal/mol (3243.9219 without restraints) Performing minimization step: 2314. Total energy = 3249.6156 kcal/mol (3243.2059 without restraints) Performing minimization step: 2315. Total energy = 3248.8971 kcal/mol (3242.4910 without restraints) Performing minimization step: 2316. Total energy = 3248.1791 kcal/mol (3241.7763 without restraints) Performing minimization step: 2317. Total energy = 3247.4628 kcal/mol (3241.0636 without restraints) Performing minimization step: 2318. Total energy = 3246.7473 kcal/mol (3240.3516 without restraints) Performing minimization step: 2319. Total energy = 3246.0335 kcal/mol (3239.6412 without restraints) Performing minimization step: 2320. Total energy = 3245.3208 kcal/mol (3238.9320 without restraints) Performing minimization step: 2321. Total energy = 3244.6097 kcal/mol (3238.2244 without restraints) Performing minimization step: 2322. Total energy = 3243.8993 kcal/mol (3237.5175 without restraints) Performing minimization step: 2323. Total energy = 3243.1902 kcal/mol (3236.8120 without restraints) Performing minimization step: 2324. Total energy = 3242.4824 kcal/mol (3236.1075 without restraints) Performing minimization step: 2325. Total energy = 3241.7756 kcal/mol (3235.4042 without restraints) Performing minimization step: 2326. Total energy = 3241.0702 kcal/mol (3234.7022 without restraints) Performing minimization step: 2327. Total energy = 3240.3660 kcal/mol (3234.0016 without restraints) Performing minimization step: 2328. Total energy = 3239.6630 kcal/mol (3233.3019 without restraints) Performing minimization step: 2329. Total energy = 3238.9610 kcal/mol (3232.6034 without restraints) Performing minimization step: 2330. Total energy = 3238.2601 kcal/mol (3231.9059 without restraints) Performing minimization step: 2331. Total energy = 3237.5606 kcal/mol (3231.2099 without restraints) Performing minimization step: 2332. Total energy = 3236.8621 kcal/mol (3230.5148 without restraints) Performing minimization step: 2333. Total energy = 3236.1649 kcal/mol (3229.8209 without restraints) Performing minimization step: 2334. Total energy = 3235.4687 kcal/mol (3229.1282 without restraints) Performing minimization step: 2335. Total energy = 3234.7738 kcal/mol (3228.4368 without restraints) Performing minimization step: 2336. Total energy = 3234.0804 kcal/mol (3227.7468 without restraints) Performing minimization step: 2337. Total energy = 3233.3877 kcal/mol (3227.0575 without restraints) Performing minimization step: 2338. Total energy = 3232.6962 kcal/mol (3226.3695 without restraints) Performing minimization step: 2339. Total energy = 3232.0058 kcal/mol (3225.6825 without restraints) Performing minimization step: 2340. Total energy = 3231.3166 kcal/mol (3224.9966 without restraints) Performing minimization step: 2341. Total energy = 3230.6290 kcal/mol (3224.3124 without restraints) Performing minimization step: 2342. Total energy = 3229.9423 kcal/mol (3223.6291 without restraints) Performing minimization step: 2343. Total energy = 3229.2567 kcal/mol (3222.9469 without restraints) Performing minimization step: 2344. Total energy = 3228.5721 kcal/mol (3222.2657 without restraints) Performing minimization step: 2345. Total energy = 3227.8885 kcal/mol (3221.5856 without restraints) Performing minimization step: 2346. Total energy = 3227.2060 kcal/mol (3220.9064 without restraints) Performing minimization step: 2347. Total energy = 3226.5249 kcal/mol (3220.2287 without restraints) Performing minimization step: 2348. Total energy = 3225.8446 kcal/mol (3219.5515 without restraints) Performing minimization step: 2349. Total energy = 3225.1656 kcal/mol (3218.8761 without restraints) Performing minimization step: 2350. Total energy = 3224.4874 kcal/mol (3218.2012 without restraints) Performing minimization step: 2351. Total energy = 3223.8108 kcal/mol (3217.5280 without restraints) Performing minimization step: 2352. Total energy = 3223.1356 kcal/mol (3216.8561 without restraints) Performing minimization step: 2353. Total energy = 3222.4615 kcal/mol (3216.1854 without restraints) Performing minimization step: 2354. Total energy = 3221.7884 kcal/mol (3215.5157 without restraints) Performing minimization step: 2355. Total energy = 3221.1163 kcal/mol (3214.8470 without restraints) Performing minimization step: 2356. Total energy = 3220.4452 kcal/mol (3214.1791 without restraints) Performing minimization step: 2357. Total energy = 3219.7755 kcal/mol (3213.5128 without restraints) Performing minimization step: 2358. Total energy = 3219.1069 kcal/mol (3212.8473 without restraints) Performing minimization step: 2359. Total energy = 3218.4390 kcal/mol (3212.1829 without restraints) Performing minimization step: 2360. Total energy = 3217.7725 kcal/mol (3211.5196 without restraints) Performing minimization step: 2361. Total energy = 3217.1067 kcal/mol (3210.8572 without restraints) Performing minimization step: 2362. Total energy = 3216.4427 kcal/mol (3210.1965 without restraints) Performing minimization step: 2363. Total energy = 3215.7796 kcal/mol (3209.5368 without restraints) Performing minimization step: 2364. Total energy = 3215.1173 kcal/mol (3208.8777 without restraints) Performing minimization step: 2365. Total energy = 3214.4563 kcal/mol (3208.2200 without restraints) Performing minimization step: 2366. Total energy = 3213.7957 kcal/mol (3207.5626 without restraints) Performing minimization step: 2367. Total energy = 3213.1361 kcal/mol (3206.9063 without restraints) Performing minimization step: 2368. Total energy = 3212.4783 kcal/mol (3206.2519 without restraints) Performing minimization step: 2369. Total energy = 3211.8211 kcal/mol (3205.5979 without restraints) Performing minimization step: 2370. Total energy = 3211.1650 kcal/mol (3204.9450 without restraints) Performing minimization step: 2371. Total energy = 3210.5096 kcal/mol (3204.2929 without restraints) Performing minimization step: 2372. Total energy = 3209.8557 kcal/mol (3203.6424 without restraints) Performing minimization step: 2373. Total energy = 3209.2030 kcal/mol (3202.9929 without restraints) Performing minimization step: 2374. Total energy = 3208.5513 kcal/mol (3202.3444 without restraints) Performing minimization step: 2375. Total energy = 3207.9006 kcal/mol (3201.6970 without restraints) Performing minimization step: 2376. Total energy = 3207.2510 kcal/mol (3201.0507 without restraints) Performing minimization step: 2377. Total energy = 3206.6025 kcal/mol (3200.4054 without restraints) Performing minimization step: 2378. Total energy = 3205.9556 kcal/mol (3199.7618 without restraints) Performing minimization step: 2379. Total energy = 3205.3092 kcal/mol (3199.1186 without restraints) Performing minimization step: 2380. Total energy = 3204.6639 kcal/mol (3198.4765 without restraints) Performing minimization step: 2381. Total energy = 3204.0198 kcal/mol (3197.8356 without restraints) Performing minimization step: 2382. Total energy = 3203.3768 kcal/mol (3197.1959 without restraints) Performing minimization step: 2383. Total energy = 3202.7344 kcal/mol (3196.5567 without restraints) Performing minimization step: 2384. Total energy = 3202.0928 kcal/mol (3195.9182 without restraints) Performing minimization step: 2385. Total energy = 3201.4524 kcal/mol (3195.2811 without restraints) Performing minimization step: 2386. Total energy = 3200.8133 kcal/mol (3194.6452 without restraints) Performing minimization step: 2387. Total energy = 3200.1751 kcal/mol (3194.0102 without restraints) Performing minimization step: 2388. Total energy = 3199.5380 kcal/mol (3193.3763 without restraints) Performing minimization step: 2389. Total energy = 3198.9017 kcal/mol (3192.7431 without restraints) Performing minimization step: 2390. Total energy = 3198.2670 kcal/mol (3192.1116 without restraints) Performing minimization step: 2391. Total energy = 3197.6329 kcal/mol (3191.4808 without restraints) Performing minimization step: 2392. Total energy = 3197.0008 kcal/mol (3190.8519 without restraints) Performing minimization step: 2393. Total energy = 3196.3687 kcal/mol (3190.2231 without restraints) Performing minimization step: 2394. Total energy = 3195.7377 kcal/mol (3189.5950 without restraints) Performing minimization step: 2395. Total energy = 3195.1083 kcal/mol (3188.9689 without restraints) Performing minimization step: 2396. Total energy = 3194.4796 kcal/mol (3188.3433 without restraints) Performing minimization step: 2397. Total energy = 3193.8519 kcal/mol (3187.7186 without restraints) Performing minimization step: 2398. Total energy = 3193.2248 kcal/mol (3187.0948 without restraints) Performing minimization step: 2399. Total energy = 3192.5988 kcal/mol (3186.4719 without restraints) Performing minimization step: 2400. Total energy = 3191.9737 kcal/mol (3185.8501 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 3191.3501 kcal/mol (3185.2297 without restraints) Performing minimization step: 2402. Total energy = 3190.7274 kcal/mol (3184.6099 without restraints) Performing minimization step: 2403. Total energy = 3190.1051 kcal/mol (3183.9906 without restraints) Performing minimization step: 2404. Total energy = 3189.4838 kcal/mol (3183.3726 without restraints) Performing minimization step: 2405. Total energy = 3188.8638 kcal/mol (3182.7559 without restraints) Performing minimization step: 2406. Total energy = 3188.2448 kcal/mol (3182.1399 without restraints) Performing minimization step: 2407. Total energy = 3187.6267 kcal/mol (3181.5249 without restraints) Performing minimization step: 2408. Total energy = 3187.0100 kcal/mol (3180.9113 without restraints) Performing minimization step: 2409. Total energy = 3186.3941 kcal/mol (3180.2984 without restraints) Performing minimization step: 2410. Total energy = 3185.7793 kcal/mol (3179.6867 without restraints) Performing minimization step: 2411. Total energy = 3185.1653 kcal/mol (3179.0760 without restraints) Performing minimization step: 2412. Total energy = 3184.5521 kcal/mol (3178.4657 without restraints) Performing minimization step: 2413. Total energy = 3183.9397 kcal/mol (3177.8564 without restraints) Performing minimization step: 2414. Total energy = 3183.3281 kcal/mol (3177.2479 without restraints) Performing minimization step: 2415. Total energy = 3182.7177 kcal/mol (3176.6406 without restraints) Performing minimization step: 2416. Total energy = 3182.1084 kcal/mol (3176.0345 without restraints) Performing minimization step: 2417. Total energy = 3181.5001 kcal/mol (3175.4294 without restraints) Performing minimization step: 2418. Total energy = 3180.8927 kcal/mol (3174.8248 without restraints) Performing minimization step: 2419. Total energy = 3180.2864 kcal/mol (3174.2215 without restraints) Performing minimization step: 2420. Total energy = 3179.6802 kcal/mol (3173.6184 without restraints) Performing minimization step: 2421. Total energy = 3179.0755 kcal/mol (3173.0167 without restraints) Performing minimization step: 2422. Total energy = 3178.4718 kcal/mol (3172.4161 without restraints) Performing minimization step: 2423. Total energy = 3177.8691 kcal/mol (3171.8165 without restraints) Performing minimization step: 2424. Total energy = 3177.2670 kcal/mol (3171.2174 without restraints) Performing minimization step: 2425. Total energy = 3176.6662 kcal/mol (3170.6196 without restraints) Performing minimization step: 2426. Total energy = 3176.0659 kcal/mol (3170.0223 without restraints) Performing minimization step: 2427. Total energy = 3175.4667 kcal/mol (3169.4262 without restraints) Performing minimization step: 2428. Total energy = 3174.8686 kcal/mol (3168.8312 without restraints) Performing minimization step: 2429. Total energy = 3174.2717 kcal/mol (3168.2373 without restraints) Performing minimization step: 2430. Total energy = 3173.6752 kcal/mol (3167.6438 without restraints) Performing minimization step: 2431. Total energy = 3173.0798 kcal/mol (3167.0514 without restraints) Performing minimization step: 2432. Total energy = 3172.4851 kcal/mol (3166.4596 without restraints) Performing minimization step: 2433. Total energy = 3171.8914 kcal/mol (3165.8689 without restraints) Performing minimization step: 2434. Total energy = 3171.2989 kcal/mol (3165.2796 without restraints) Performing minimization step: 2435. Total energy = 3170.7075 kcal/mol (3164.6910 without restraints) Performing minimization step: 2436. Total energy = 3170.1166 kcal/mol (3164.1030 without restraints) Performing minimization step: 2437. Total energy = 3169.5267 kcal/mol (3163.5163 without restraints) Performing minimization step: 2438. Total energy = 3168.9378 kcal/mol (3162.9303 without restraints) Performing minimization step: 2439. Total energy = 3168.3498 kcal/mol (3162.3452 without restraints) Performing minimization step: 2440. Total energy = 3167.7623 kcal/mol (3161.7607 without restraints) Performing minimization step: 2441. Total energy = 3167.1756 kcal/mol (3161.1770 without restraints) Performing minimization step: 2442. Total energy = 3166.5900 kcal/mol (3160.5943 without restraints) Performing minimization step: 2443. Total energy = 3166.0055 kcal/mol (3160.0127 without restraints) Performing minimization step: 2444. Total energy = 3165.4220 kcal/mol (3159.4324 without restraints) Performing minimization step: 2445. Total energy = 3164.8392 kcal/mol (3158.8523 without restraints) Performing minimization step: 2446. Total energy = 3164.2572 kcal/mol (3158.2733 without restraints) Performing minimization step: 2447. Total energy = 3163.6762 kcal/mol (3157.6951 without restraints) Performing minimization step: 2448. Total energy = 3163.0956 kcal/mol (3157.1174 without restraints) Performing minimization step: 2449. Total energy = 3162.5160 kcal/mol (3156.5408 without restraints) Performing minimization step: 2450. Total energy = 3161.9375 kcal/mol (3155.9653 without restraints) Performing minimization step: 2451. Total energy = 3161.3599 kcal/mol (3155.3906 without restraints) Performing minimization step: 2452. Total energy = 3160.7827 kcal/mol (3154.8162 without restraints) Performing minimization step: 2453. Total energy = 3160.2069 kcal/mol (3154.2433 without restraints) Performing minimization step: 2454. Total energy = 3159.6315 kcal/mol (3153.6709 without restraints) Performing minimization step: 2455. Total energy = 3159.0574 kcal/mol (3153.0996 without restraints) Performing minimization step: 2456. Total energy = 3158.4837 kcal/mol (3152.5288 without restraints) Performing minimization step: 2457. Total energy = 3157.9114 kcal/mol (3151.9595 without restraints) Performing minimization step: 2458. Total energy = 3157.3392 kcal/mol (3151.3900 without restraints) Performing minimization step: 2459. Total energy = 3156.7682 kcal/mol (3150.8220 without restraints) Performing minimization step: 2460. Total energy = 3156.1988 kcal/mol (3150.2556 without restraints) Performing minimization step: 2461. Total energy = 3155.6301 kcal/mol (3149.6897 without restraints) Performing minimization step: 2462. Total energy = 3155.0613 kcal/mol (3149.1238 without restraints) Performing minimization step: 2463. Total energy = 3154.4944 kcal/mol (3148.5597 without restraints) Performing minimization step: 2464. Total energy = 3153.9274 kcal/mol (3147.9956 without restraints) Performing minimization step: 2465. Total energy = 3153.3616 kcal/mol (3147.4327 without restraints) Performing minimization step: 2466. Total energy = 3152.7967 kcal/mol (3146.8706 without restraints) Performing minimization step: 2467. Total energy = 3152.2329 kcal/mol (3146.3096 without restraints) Performing minimization step: 2468. Total energy = 3151.6698 kcal/mol (3145.7493 without restraints) Performing minimization step: 2469. Total energy = 3151.1073 kcal/mol (3145.1897 without restraints) Performing minimization step: 2470. Total energy = 3150.5452 kcal/mol (3144.6305 without restraints) Performing minimization step: 2471. Total energy = 3149.9840 kcal/mol (3144.0720 without restraints) Performing minimization step: 2472. Total energy = 3149.4237 kcal/mol (3143.5147 without restraints) Performing minimization step: 2473. Total energy = 3148.8648 kcal/mol (3142.9584 without restraints) Performing minimization step: 2474. Total energy = 3148.3063 kcal/mol (3142.4027 without restraints) Performing minimization step: 2475. Total energy = 3147.7482 kcal/mol (3141.8475 without restraints) Performing minimization step: 2476. Total energy = 3147.1914 kcal/mol (3141.2935 without restraints) Performing minimization step: 2477. Total energy = 3146.6355 kcal/mol (3140.7404 without restraints) Performing minimization step: 2478. Total energy = 3146.0808 kcal/mol (3140.1885 without restraints) Performing minimization step: 2479. Total energy = 3145.5263 kcal/mol (3139.6368 without restraints) Performing minimization step: 2480. Total energy = 3144.9728 kcal/mol (3139.0860 without restraints) Performing minimization step: 2481. Total energy = 3144.4200 kcal/mol (3138.5359 without restraints) Performing minimization step: 2482. Total energy = 3143.8677 kcal/mol (3137.9865 without restraints) Performing minimization step: 2483. Total energy = 3143.3163 kcal/mol (3137.4378 without restraints) Performing minimization step: 2484. Total energy = 3142.7658 kcal/mol (3136.8901 without restraints) Performing minimization step: 2485. Total energy = 3142.2161 kcal/mol (3136.3432 without restraints) Performing minimization step: 2486. Total energy = 3141.6673 kcal/mol (3135.7973 without restraints) Performing minimization step: 2487. Total energy = 3141.1193 kcal/mol (3135.2519 without restraints) Performing minimization step: 2488. Total energy = 3140.5723 kcal/mol (3134.7077 without restraints) Performing minimization step: 2489. Total energy = 3140.0258 kcal/mol (3134.1639 without restraints) Performing minimization step: 2490. Total energy = 3139.4800 kcal/mol (3133.6208 without restraints) Performing minimization step: 2491. Total energy = 3138.9352 kcal/mol (3133.0789 without restraints) Performing minimization step: 2492. Total energy = 3138.3910 kcal/mol (3132.5373 without restraints) Performing minimization step: 2493. Total energy = 3137.8475 kcal/mol (3131.9966 without restraints) Performing minimization step: 2494. Total energy = 3137.3049 kcal/mol (3131.4566 without restraints) Performing minimization step: 2495. Total energy = 3136.7627 kcal/mol (3130.9172 without restraints) Performing minimization step: 2496. Total energy = 3136.2215 kcal/mol (3130.3787 without restraints) Performing minimization step: 2497. Total energy = 3135.6813 kcal/mol (3129.8410 without restraints) Performing minimization step: 2498. Total energy = 3135.1414 kcal/mol (3129.3039 without restraints) Performing minimization step: 2499. Total energy = 3134.6030 kcal/mol (3128.7685 without restraints) Performing minimization step: 2500. Total energy = 3134.0654 kcal/mol (3128.2333 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 3133.5282 kcal/mol (3127.6989 without restraints) Performing minimization step: 2502. Total energy = 3132.9917 kcal/mol (3127.1650 without restraints) Performing minimization step: 2503. Total energy = 3132.4559 kcal/mol (3126.6319 without restraints) Performing minimization step: 2504. Total energy = 3131.9211 kcal/mol (3126.0998 without restraints) Performing minimization step: 2505. Total energy = 3131.3872 kcal/mol (3125.5687 without restraints) Performing minimization step: 2506. Total energy = 3130.8542 kcal/mol (3125.0383 without restraints) Performing minimization step: 2507. Total energy = 3130.3211 kcal/mol (3124.5077 without restraints) Performing minimization step: 2508. Total energy = 3129.7891 kcal/mol (3123.9785 without restraints) Performing minimization step: 2509. Total energy = 3129.2578 kcal/mol (3123.4498 without restraints) Performing minimization step: 2510. Total energy = 3128.7274 kcal/mol (3122.9221 without restraints) Performing minimization step: 2511. Total energy = 3128.1979 kcal/mol (3122.3953 without restraints) Performing minimization step: 2512. Total energy = 3127.6698 kcal/mol (3121.8698 without restraints) Performing minimization step: 2513. Total energy = 3127.1414 kcal/mol (3121.3441 without restraints) Performing minimization step: 2514. Total energy = 3126.6136 kcal/mol (3120.8189 without restraints) Performing minimization step: 2515. Total energy = 3126.0867 kcal/mol (3120.2946 without restraints) Performing minimization step: 2516. Total energy = 3125.5605 kcal/mol (3119.7712 without restraints) Performing minimization step: 2517. Total energy = 3125.0353 kcal/mol (3119.2484 without restraints) Performing minimization step: 2518. Total energy = 3124.5109 kcal/mol (3118.7268 without restraints) Performing minimization step: 2519. Total energy = 3123.9870 kcal/mol (3118.2053 without restraints) Performing minimization step: 2520. Total energy = 3123.4643 kcal/mol (3117.6852 without restraints) Performing minimization step: 2521. Total energy = 3122.9413 kcal/mol (3117.1648 without restraints) Performing minimization step: 2522. Total energy = 3122.4192 kcal/mol (3116.6453 without restraints) Performing minimization step: 2523. Total energy = 3121.8979 kcal/mol (3116.1266 without restraints) Performing minimization step: 2524. Total energy = 3121.3777 kcal/mol (3115.6091 without restraints) Performing minimization step: 2525. Total energy = 3120.8582 kcal/mol (3115.0921 without restraints) Performing minimization step: 2526. Total energy = 3120.3392 kcal/mol (3114.5757 without restraints) Performing minimization step: 2527. Total energy = 3119.8220 kcal/mol (3114.0610 without restraints) Performing minimization step: 2528. Total energy = 3119.3049 kcal/mol (3113.5466 without restraints) Performing minimization step: 2529. Total energy = 3118.7882 kcal/mol (3113.0323 without restraints) Performing minimization step: 2530. Total energy = 3118.2724 kcal/mol (3112.5191 without restraints) Performing minimization step: 2531. Total energy = 3117.7570 kcal/mol (3112.0063 without restraints) Performing minimization step: 2532. Total energy = 3117.2422 kcal/mol (3111.4941 without restraints) Performing minimization step: 2533. Total energy = 3116.7286 kcal/mol (3110.9831 without restraints) Performing minimization step: 2534. Total energy = 3116.2156 kcal/mol (3110.4725 without restraints) Performing minimization step: 2535. Total energy = 3115.7031 kcal/mol (3109.9626 without restraints) Performing minimization step: 2536. Total energy = 3115.1911 kcal/mol (3109.4532 without restraints) Performing minimization step: 2537. Total energy = 3114.6803 kcal/mol (3108.9450 without restraints) Performing minimization step: 2538. Total energy = 3114.1699 kcal/mol (3108.4369 without restraints) Performing minimization step: 2539. Total energy = 3113.6597 kcal/mol (3107.9292 without restraints) Performing minimization step: 2540. Total energy = 3113.1507 kcal/mol (3107.4228 without restraints) Performing minimization step: 2541. Total energy = 3112.6424 kcal/mol (3106.9170 without restraints) Performing minimization step: 2542. Total energy = 3112.1349 kcal/mol (3106.4122 without restraints) Performing minimization step: 2543. Total energy = 3111.6285 kcal/mol (3105.9082 without restraints) Performing minimization step: 2544. Total energy = 3111.1226 kcal/mol (3105.4047 without restraints) Performing minimization step: 2545. Total energy = 3110.6166 kcal/mol (3104.9010 without restraints) Performing minimization step: 2546. Total energy = 3110.1111 kcal/mol (3104.3982 without restraints) Performing minimization step: 2547. Total energy = 3109.6069 kcal/mol (3103.8964 without restraints) Performing minimization step: 2548. Total energy = 3109.1032 kcal/mol (3103.3952 without restraints) Performing minimization step: 2549. Total energy = 3108.6010 kcal/mol (3102.8956 without restraints) Performing minimization step: 2550. Total energy = 3108.0995 kcal/mol (3102.3967 without restraints) Performing minimization step: 2551. Total energy = 3107.5982 kcal/mol (3101.8978 without restraints) Performing minimization step: 2552. Total energy = 3107.0972 kcal/mol (3101.3990 without restraints) Performing minimization step: 2553. Total energy = 3106.5969 kcal/mol (3100.9012 without restraints) Performing minimization step: 2554. Total energy = 3106.0967 kcal/mol (3100.4033 without restraints) Performing minimization step: 2555. Total energy = 3105.5977 kcal/mol (3099.9069 without restraints) Performing minimization step: 2556. Total energy = 3105.0996 kcal/mol (3099.4113 without restraints) Performing minimization step: 2557. Total energy = 3104.6016 kcal/mol (3098.9157 without restraints) Performing minimization step: 2558. Total energy = 3104.1048 kcal/mol (3098.4213 without restraints) Performing minimization step: 2559. Total energy = 3103.6082 kcal/mol (3097.9270 without restraints) Performing minimization step: 2560. Total energy = 3103.1123 kcal/mol (3097.4337 without restraints) Performing minimization step: 2561. Total energy = 3102.6171 kcal/mol (3096.9407 without restraints) Performing minimization step: 2562. Total energy = 3102.1224 kcal/mol (3096.4486 without restraints) Performing minimization step: 2563. Total energy = 3101.6284 kcal/mol (3095.9570 without restraints) Performing minimization step: 2564. Total energy = 3101.1356 kcal/mol (3095.4666 without restraints) Performing minimization step: 2565. Total energy = 3100.6428 kcal/mol (3094.9762 without restraints) Performing minimization step: 2566. Total energy = 3100.1510 kcal/mol (3094.4869 without restraints) Performing minimization step: 2567. Total energy = 3099.6600 kcal/mol (3093.9984 without restraints) Performing minimization step: 2568. Total energy = 3099.1693 kcal/mol (3093.5099 without restraints) Performing minimization step: 2569. Total energy = 3098.6796 kcal/mol (3093.0228 without restraints) Performing minimization step: 2570. Total energy = 3098.1906 kcal/mol (3092.5360 without restraints) Performing minimization step: 2571. Total energy = 3097.7018 kcal/mol (3092.0495 without restraints) Performing minimization step: 2572. Total energy = 3097.2137 kcal/mol (3091.5640 without restraints) Performing minimization step: 2573. Total energy = 3096.7266 kcal/mol (3091.0791 without restraints) Performing minimization step: 2574. Total energy = 3096.2398 kcal/mol (3090.5947 without restraints) Performing minimization step: 2575. Total energy = 3095.7534 kcal/mol (3090.1107 without restraints) Performing minimization step: 2576. Total energy = 3095.2679 kcal/mol (3089.6275 without restraints) Performing minimization step: 2577. Total energy = 3094.7835 kcal/mol (3089.1455 without restraints) Performing minimization step: 2578. Total energy = 3094.2996 kcal/mol (3088.6638 without restraints) Performing minimization step: 2579. Total energy = 3093.8160 kcal/mol (3088.1827 without restraints) Performing minimization step: 2580. Total energy = 3093.3330 kcal/mol (3087.7019 without restraints) Performing minimization step: 2581. Total energy = 3092.8509 kcal/mol (3087.2221 without restraints) Performing minimization step: 2582. Total energy = 3092.3692 kcal/mol (3086.7429 without restraints) Performing minimization step: 2583. Total energy = 3091.8881 kcal/mol (3086.2639 without restraints) Performing minimization step: 2584. Total energy = 3091.4073 kcal/mol (3085.7855 without restraints) Performing minimization step: 2585. Total energy = 3090.9279 kcal/mol (3085.3085 without restraints) Performing minimization step: 2586. Total energy = 3090.4489 kcal/mol (3084.8318 without restraints) Performing minimization step: 2587. Total energy = 3089.9705 kcal/mol (3084.3557 without restraints) Performing minimization step: 2588. Total energy = 3089.4925 kcal/mol (3083.8799 without restraints) Performing minimization step: 2589. Total energy = 3089.0155 kcal/mol (3083.4053 without restraints) Performing minimization step: 2590. Total energy = 3088.5389 kcal/mol (3082.9311 without restraints) Performing minimization step: 2591. Total energy = 3088.0626 kcal/mol (3082.4570 without restraints) Performing minimization step: 2592. Total energy = 3087.5872 kcal/mol (3081.9839 without restraints) Performing minimization step: 2593. Total energy = 3087.1123 kcal/mol (3081.5111 without restraints) Performing minimization step: 2594. Total energy = 3086.6379 kcal/mol (3081.0390 without restraints) Performing minimization step: 2595. Total energy = 3086.1649 kcal/mol (3080.5684 without restraints) Performing minimization step: 2596. Total energy = 3085.6917 kcal/mol (3080.0974 without restraints) Performing minimization step: 2597. Total energy = 3085.2191 kcal/mol (3079.6271 without restraints) Performing minimization step: 2598. Total energy = 3084.7472 kcal/mol (3079.1574 without restraints) Performing minimization step: 2599. Total energy = 3084.2761 kcal/mol (3078.6886 without restraints) Performing minimization step: 2600. Total energy = 3083.8051 kcal/mol (3078.2198 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 3083.3352 kcal/mol (3077.7521 without restraints) Performing minimization step: 2602. Total energy = 3082.8660 kcal/mol (3077.2851 without restraints) Performing minimization step: 2603. Total energy = 3082.3968 kcal/mol (3076.8181 without restraints) Performing minimization step: 2604. Total energy = 3081.9283 kcal/mol (3076.3520 without restraints) Performing minimization step: 2605. Total energy = 3081.4606 kcal/mol (3075.8863 without restraints) Performing minimization step: 2606. Total energy = 3080.9934 kcal/mol (3075.4217 without restraints) Performing minimization step: 2607. Total energy = 3080.5269 kcal/mol (3074.9572 without restraints) Performing minimization step: 2608. Total energy = 3080.0609 kcal/mol (3074.4934 without restraints) Performing minimization step: 2609. Total energy = 3079.5954 kcal/mol (3074.0302 without restraints) Performing minimization step: 2610. Total energy = 3079.1305 kcal/mol (3073.5675 without restraints) Performing minimization step: 2611. Total energy = 3078.6662 kcal/mol (3073.1054 without restraints) Performing minimization step: 2612. Total energy = 3078.2025 kcal/mol (3072.6440 without restraints) Performing minimization step: 2613. Total energy = 3077.7397 kcal/mol (3072.1833 without restraints) Performing minimization step: 2614. Total energy = 3077.2772 kcal/mol (3071.7230 without restraints) Performing minimization step: 2615. Total energy = 3076.8155 kcal/mol (3071.2635 without restraints) Performing minimization step: 2616. Total energy = 3076.3541 kcal/mol (3070.8042 without restraints) Performing minimization step: 2617. Total energy = 3075.8937 kcal/mol (3070.3460 without restraints) Performing minimization step: 2618. Total energy = 3075.4333 kcal/mol (3069.8877 without restraints) Performing minimization step: 2619. Total energy = 3074.9731 kcal/mol (3069.4297 without restraints) Performing minimization step: 2620. Total energy = 3074.5142 kcal/mol (3068.9730 without restraints) Performing minimization step: 2621. Total energy = 3074.0556 kcal/mol (3068.5165 without restraints) Performing minimization step: 2622. Total energy = 3073.5977 kcal/mol (3068.0609 without restraints) Performing minimization step: 2623. Total energy = 3073.1403 kcal/mol (3067.6055 without restraints) Performing minimization step: 2624. Total energy = 3072.6834 kcal/mol (3067.1508 without restraints) Performing minimization step: 2625. Total energy = 3072.2273 kcal/mol (3066.6968 without restraints) Performing minimization step: 2626. Total energy = 3071.7716 kcal/mol (3066.2432 without restraints) Performing minimization step: 2627. Total energy = 3071.3165 kcal/mol (3065.7902 without restraints) Performing minimization step: 2628. Total energy = 3070.8624 kcal/mol (3065.3381 without restraints) Performing minimization step: 2629. Total energy = 3070.4083 kcal/mol (3064.8863 without restraints) Performing minimization step: 2630. Total energy = 3069.9548 kcal/mol (3064.4348 without restraints) Performing minimization step: 2631. Total energy = 3069.5021 kcal/mol (3063.9843 without restraints) Performing minimization step: 2632. Total energy = 3069.0499 kcal/mol (3063.5343 without restraints) Performing minimization step: 2633. Total energy = 3068.5977 kcal/mol (3063.0842 without restraints) Performing minimization step: 2634. Total energy = 3068.1466 kcal/mol (3062.6352 without restraints) Performing minimization step: 2635. Total energy = 3067.6960 kcal/mol (3062.1867 without restraints) Performing minimization step: 2636. Total energy = 3067.2463 kcal/mol (3061.7390 without restraints) Performing minimization step: 2637. Total energy = 3066.7969 kcal/mol (3061.2917 without restraints) Performing minimization step: 2638. Total energy = 3066.3479 kcal/mol (3060.8449 without restraints) Performing minimization step: 2639. Total energy = 3065.8995 kcal/mol (3060.3985 without restraints) Performing minimization step: 2640. Total energy = 3065.4515 kcal/mol (3059.9524 without restraints) Performing minimization step: 2641. Total energy = 3065.0041 kcal/mol (3059.5075 without restraints) Performing minimization step: 2642. Total energy = 3064.5575 kcal/mol (3059.0628 without restraints) Performing minimization step: 2643. Total energy = 3064.1111 kcal/mol (3058.6185 without restraints) Performing minimization step: 2644. Total energy = 3063.6656 kcal/mol (3058.1750 without restraints) Performing minimization step: 2645. Total energy = 3063.2204 kcal/mol (3057.7316 without restraints) Performing minimization step: 2646. Total energy = 3062.7756 kcal/mol (3057.2890 without restraints) Performing minimization step: 2647. Total energy = 3062.3314 kcal/mol (3056.8469 without restraints) Performing minimization step: 2648. Total energy = 3061.8882 kcal/mol (3056.4060 without restraints) Performing minimization step: 2649. Total energy = 3061.4455 kcal/mol (3055.9651 without restraints) Performing minimization step: 2650. Total energy = 3061.0028 kcal/mol (3055.5244 without restraints) Performing minimization step: 2651. Total energy = 3060.5611 kcal/mol (3055.0849 without restraints) Performing minimization step: 2652. Total energy = 3060.1197 kcal/mol (3054.6453 without restraints) Performing minimization step: 2653. Total energy = 3059.6794 kcal/mol (3054.2071 without restraints) Performing minimization step: 2654. Total energy = 3059.2392 kcal/mol (3053.7688 without restraints) Performing minimization step: 2655. Total energy = 3058.7996 kcal/mol (3053.3312 without restraints) Performing minimization step: 2656. Total energy = 3058.3604 kcal/mol (3052.8942 without restraints) Performing minimization step: 2657. Total energy = 3057.9216 kcal/mol (3052.4572 without restraints) Performing minimization step: 2658. Total energy = 3057.4833 kcal/mol (3052.0210 without restraints) Performing minimization step: 2659. Total energy = 3057.0458 kcal/mol (3051.5855 without restraints) Performing minimization step: 2660. Total energy = 3056.6087 kcal/mol (3051.1505 without restraints) Performing minimization step: 2661. Total energy = 3056.1722 kcal/mol (3050.7158 without restraints) Performing minimization step: 2662. Total energy = 3055.7360 kcal/mol (3050.2816 without restraints) Performing minimization step: 2663. Total energy = 3055.3003 kcal/mol (3049.8479 without restraints) Performing minimization step: 2664. Total energy = 3054.8660 kcal/mol (3049.4155 without restraints) Performing minimization step: 2665. Total energy = 3054.4314 kcal/mol (3048.9831 without restraints) Performing minimization step: 2666. Total energy = 3053.9975 kcal/mol (3048.5510 without restraints) Performing minimization step: 2667. Total energy = 3053.5643 kcal/mol (3048.1198 without restraints) Performing minimization step: 2668. Total energy = 3053.1311 kcal/mol (3047.6885 without restraints) Performing minimization step: 2669. Total energy = 3052.6987 kcal/mol (3047.2581 without restraints) Performing minimization step: 2670. Total energy = 3052.2672 kcal/mol (3046.8285 without restraints) Performing minimization step: 2671. Total energy = 3051.8367 kcal/mol (3046.4000 without restraints) Performing minimization step: 2672. Total energy = 3051.4058 kcal/mol (3045.9710 without restraints) Performing minimization step: 2673. Total energy = 3050.9753 kcal/mol (3045.5424 without restraints) Performing minimization step: 2674. Total energy = 3050.5454 kcal/mol (3045.1144 without restraints) Performing minimization step: 2675. Total energy = 3050.1157 kcal/mol (3044.6868 without restraints) Performing minimization step: 2676. Total energy = 3049.6866 kcal/mol (3044.2595 without restraints) Performing minimization step: 2677. Total energy = 3049.2577 kcal/mol (3043.8325 without restraints) Performing minimization step: 2678. Total energy = 3048.8298 kcal/mol (3043.4066 without restraints) Performing minimization step: 2679. Total energy = 3048.4024 kcal/mol (3042.9810 without restraints) Performing minimization step: 2680. Total energy = 3047.9754 kcal/mol (3042.5559 without restraints) Performing minimization step: 2681. Total energy = 3047.5490 kcal/mol (3042.1315 without restraints) Performing minimization step: 2682. Total energy = 3047.1226 kcal/mol (3041.7070 without restraints) Performing minimization step: 2683. Total energy = 3046.6978 kcal/mol (3041.2841 without restraints) Performing minimization step: 2684. Total energy = 3046.2731 kcal/mol (3040.8613 without restraints) Performing minimization step: 2685. Total energy = 3045.8483 kcal/mol (3040.4383 without restraints) Performing minimization step: 2686. Total energy = 3045.4246 kcal/mol (3040.0165 without restraints) Performing minimization step: 2687. Total energy = 3045.0012 kcal/mol (3039.5949 without restraints) Performing minimization step: 2688. Total energy = 3044.5782 kcal/mol (3039.1739 without restraints) Performing minimization step: 2689. Total energy = 3044.1558 kcal/mol (3038.7533 without restraints) Performing minimization step: 2690. Total energy = 3043.7339 kcal/mol (3038.3332 without restraints) Performing minimization step: 2691. Total energy = 3043.3128 kcal/mol (3037.9141 without restraints) Performing minimization step: 2692. Total energy = 3042.8916 kcal/mol (3037.4945 without restraints) Performing minimization step: 2693. Total energy = 3042.4709 kcal/mol (3037.0759 without restraints) Performing minimization step: 2694. Total energy = 3042.0509 kcal/mol (3036.6577 without restraints) Performing minimization step: 2695. Total energy = 3041.6317 kcal/mol (3036.2405 without restraints) Performing minimization step: 2696. Total energy = 3041.2129 kcal/mol (3035.8234 without restraints) Performing minimization step: 2697. Total energy = 3040.7945 kcal/mol (3035.4069 without restraints) Performing minimization step: 2698. Total energy = 3040.3767 kcal/mol (3034.9909 without restraints) Performing minimization step: 2699. Total energy = 3039.9596 kcal/mol (3034.5755 without restraints) Performing minimization step: 2700. Total energy = 3039.5426 kcal/mol (3034.1604 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 3039.1260 kcal/mol (3033.7456 without restraints) Performing minimization step: 2702. Total energy = 3038.7103 kcal/mol (3033.3317 without restraints) Performing minimization step: 2703. Total energy = 3038.2949 kcal/mol (3032.9182 without restraints) Performing minimization step: 2704. Total energy = 3037.8803 kcal/mol (3032.5054 without restraints) Performing minimization step: 2705. Total energy = 3037.4660 kcal/mol (3032.0928 without restraints) Performing minimization step: 2706. Total energy = 3037.0517 kcal/mol (3031.6804 without restraints) Performing minimization step: 2707. Total energy = 3036.6379 kcal/mol (3031.2683 without restraints) Performing minimization step: 2708. Total energy = 3036.2247 kcal/mol (3030.8569 without restraints) Performing minimization step: 2709. Total energy = 3035.8120 kcal/mol (3030.4460 without restraints) Performing minimization step: 2710. Total energy = 3035.3997 kcal/mol (3030.0355 without restraints) Performing minimization step: 2711. Total energy = 3034.9885 kcal/mol (3029.6261 without restraints) Performing minimization step: 2712. Total energy = 3034.5776 kcal/mol (3029.2170 without restraints) Performing minimization step: 2713. Total energy = 3034.1668 kcal/mol (3028.8079 without restraints) Performing minimization step: 2714. Total energy = 3033.7562 kcal/mol (3028.3990 without restraints) Performing minimization step: 2715. Total energy = 3033.3466 kcal/mol (3027.9911 without restraints) Performing minimization step: 2716. Total energy = 3032.9371 kcal/mol (3027.5835 without restraints) Performing minimization step: 2717. Total energy = 3032.5282 kcal/mol (3027.1765 without restraints) Performing minimization step: 2718. Total energy = 3032.1201 kcal/mol (3026.7700 without restraints) Performing minimization step: 2719. Total energy = 3031.7128 kcal/mol (3026.3644 without restraints) Performing minimization step: 2720. Total energy = 3031.3053 kcal/mol (3025.9587 without restraints) Performing minimization step: 2721. Total energy = 3030.8983 kcal/mol (3025.5534 without restraints) Performing minimization step: 2722. Total energy = 3030.4921 kcal/mol (3025.1491 without restraints) Performing minimization step: 2723. Total energy = 3030.0861 kcal/mol (3024.7447 without restraints) Performing minimization step: 2724. Total energy = 3029.6805 kcal/mol (3024.3409 without restraints) Performing minimization step: 2725. Total energy = 3029.2757 kcal/mol (3023.9378 without restraints) Performing minimization step: 2726. Total energy = 3028.8711 kcal/mol (3023.5349 without restraints) Performing minimization step: 2727. Total energy = 3028.4669 kcal/mol (3023.1323 without restraints) Performing minimization step: 2728. Total energy = 3028.0635 kcal/mol (3022.7306 without restraints) Performing minimization step: 2729. Total energy = 3027.6605 kcal/mol (3022.3294 without restraints) Performing minimization step: 2730. Total energy = 3027.2574 kcal/mol (3021.9279 without restraints) Performing minimization step: 2731. Total energy = 3026.8547 kcal/mol (3021.5269 without restraints) Performing minimization step: 2732. Total energy = 3026.4529 kcal/mol (3021.1268 without restraints) Performing minimization step: 2733. Total energy = 3026.0513 kcal/mol (3020.7270 without restraints) Performing minimization step: 2734. Total energy = 3025.6504 kcal/mol (3020.3277 without restraints) Performing minimization step: 2735. Total energy = 3025.2499 kcal/mol (3019.9289 without restraints) Performing minimization step: 2736. Total energy = 3024.8496 kcal/mol (3019.5303 without restraints) Performing minimization step: 2737. Total energy = 3024.4502 kcal/mol (3019.1323 without restraints) Performing minimization step: 2738. Total energy = 3024.0505 kcal/mol (3018.7347 without restraints) Performing minimization step: 2739. Total energy = 3023.6520 kcal/mol (3018.3377 without restraints) Performing minimization step: 2740. Total energy = 3023.2536 kcal/mol (3017.9409 without restraints) Performing minimization step: 2741. Total energy = 3022.8556 kcal/mol (3017.5446 without restraints) Performing minimization step: 2742. Total energy = 3022.4583 kcal/mol (3017.1489 without restraints) Performing minimization step: 2743. Total energy = 3022.0610 kcal/mol (3016.7533 without restraints) Performing minimization step: 2744. Total energy = 3021.6643 kcal/mol (3016.3583 without restraints) Performing minimization step: 2745. Total energy = 3021.2684 kcal/mol (3015.9640 without restraints) Performing minimization step: 2746. Total energy = 3020.8731 kcal/mol (3015.5703 without restraints) Performing minimization step: 2747. Total energy = 3020.4776 kcal/mol (3015.1765 without restraints) Performing minimization step: 2748. Total energy = 3020.0834 kcal/mol (3014.7839 without restraints) Performing minimization step: 2749. Total energy = 3019.6890 kcal/mol (3014.3911 without restraints) Performing minimization step: 2750. Total energy = 3019.2952 kcal/mol (3013.9989 without restraints) Performing minimization step: 2751. Total energy = 3018.9017 kcal/mol (3013.6070 without restraints) Performing minimization step: 2752. Total energy = 3018.5084 kcal/mol (3013.2154 without restraints) Performing minimization step: 2753. Total energy = 3018.1159 kcal/mol (3012.8244 without restraints) Performing minimization step: 2754. Total energy = 3017.7234 kcal/mol (3012.4336 without restraints) Performing minimization step: 2755. Total energy = 3017.3315 kcal/mol (3012.0432 without restraints) Performing minimization step: 2756. Total energy = 3016.9401 kcal/mol (3011.6535 without restraints) Performing minimization step: 2757. Total energy = 3016.5492 kcal/mol (3011.2642 without restraints) Performing minimization step: 2758. Total energy = 3016.1592 kcal/mol (3010.8758 without restraints) Performing minimization step: 2759. Total energy = 3015.7689 kcal/mol (3010.4871 without restraints) Performing minimization step: 2760. Total energy = 3015.3792 kcal/mol (3010.0991 without restraints) Performing minimization step: 2761. Total energy = 3014.9903 kcal/mol (3009.7116 without restraints) Performing minimization step: 2762. Total energy = 3014.6015 kcal/mol (3009.3244 without restraints) Performing minimization step: 2763. Total energy = 3014.2132 kcal/mol (3008.9377 without restraints) Performing minimization step: 2764. Total energy = 3013.8253 kcal/mol (3008.5514 without restraints) Performing minimization step: 2765. Total energy = 3013.4382 kcal/mol (3008.1659 without restraints) Performing minimization step: 2766. Total energy = 3013.0516 kcal/mol (3007.7808 without restraints) Performing minimization step: 2767. Total energy = 3012.6652 kcal/mol (3007.3959 without restraints) Performing minimization step: 2768. Total energy = 3012.2790 kcal/mol (3007.0113 without restraints) Performing minimization step: 2769. Total energy = 3011.8930 kcal/mol (3006.6268 without restraints) Performing minimization step: 2770. Total energy = 3011.5074 kcal/mol (3006.2426 without restraints) Performing minimization step: 2771. Total energy = 3011.1226 kcal/mol (3005.8593 without restraints) Performing minimization step: 2772. Total energy = 3010.7379 kcal/mol (3005.4764 without restraints) Performing minimization step: 2773. Total energy = 3010.3541 kcal/mol (3005.0941 without restraints) Performing minimization step: 2774. Total energy = 3009.9702 kcal/mol (3004.7116 without restraints) Performing minimization step: 2775. Total energy = 3009.5870 kcal/mol (3004.3300 without restraints) Performing minimization step: 2776. Total energy = 3009.2042 kcal/mol (3003.9487 without restraints) Performing minimization step: 2777. Total energy = 3008.8218 kcal/mol (3003.5679 without restraints) Performing minimization step: 2778. Total energy = 3008.4399 kcal/mol (3003.1875 without restraints) Performing minimization step: 2779. Total energy = 3008.0584 kcal/mol (3002.8074 without restraints) Performing minimization step: 2780. Total energy = 3007.6775 kcal/mol (3002.4281 without restraints) Performing minimization step: 2781. Total energy = 3007.2971 kcal/mol (3002.0493 without restraints) Performing minimization step: 2782. Total energy = 3006.9170 kcal/mol (3001.6707 without restraints) Performing minimization step: 2783. Total energy = 3006.5374 kcal/mol (3001.2924 without restraints) Performing minimization step: 2784. Total energy = 3006.1577 kcal/mol (3000.9142 without restraints) Performing minimization step: 2785. Total energy = 3005.7786 kcal/mol (3000.5366 without restraints) Performing minimization step: 2786. Total energy = 3005.4001 kcal/mol (3000.1597 without restraints) Performing minimization step: 2787. Total energy = 3005.0219 kcal/mol (2999.7827 without restraints) Performing minimization step: 2788. Total energy = 3004.6443 kcal/mol (2999.4068 without restraints) Performing minimization step: 2789. Total energy = 3004.2668 kcal/mol (2999.0306 without restraints) Performing minimization step: 2790. Total energy = 3003.8900 kcal/mol (2998.6554 without restraints) Performing minimization step: 2791. Total energy = 3003.5133 kcal/mol (2998.2802 without restraints) Performing minimization step: 2792. Total energy = 3003.1375 kcal/mol (2997.9057 without restraints) Performing minimization step: 2793. Total energy = 3002.7614 kcal/mol (2997.5314 without restraints) Performing minimization step: 2794. Total energy = 3002.3865 kcal/mol (2997.1577 without restraints) Performing minimization step: 2795. Total energy = 3002.0118 kcal/mol (2996.7844 without restraints) Performing minimization step: 2796. Total energy = 3001.6370 kcal/mol (2996.4111 without restraints) Performing minimization step: 2797. Total energy = 3001.2632 kcal/mol (2996.0387 without restraints) Performing minimization step: 2798. Total energy = 3000.8897 kcal/mol (2995.6666 without restraints) Performing minimization step: 2799. Total energy = 3000.5163 kcal/mol (2995.2947 without restraints) Performing minimization step: 2800. Total energy = 3000.1432 kcal/mol (2994.9231 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 2999.7705 kcal/mol (2994.5517 without restraints) Performing minimization step: 2802. Total energy = 2999.3988 kcal/mol (2994.1814 without restraints) Performing minimization step: 2803. Total energy = 2999.0272 kcal/mol (2993.8113 without restraints) Performing minimization step: 2804. Total energy = 2998.6558 kcal/mol (2993.4413 without restraints) Performing minimization step: 2805. Total energy = 2998.2852 kcal/mol (2993.0721 without restraints) Performing minimization step: 2806. Total energy = 2997.9149 kcal/mol (2992.7034 without restraints) Performing minimization step: 2807. Total energy = 2997.5445 kcal/mol (2992.3343 without restraints) Performing minimization step: 2808. Total energy = 2997.1750 kcal/mol (2991.9661 without restraints) Performing minimization step: 2809. Total energy = 2996.8061 kcal/mol (2991.5988 without restraints) Performing minimization step: 2810. Total energy = 2996.4374 kcal/mol (2991.2312 without restraints) Performing minimization step: 2811. Total energy = 2996.0687 kcal/mol (2990.8640 without restraints) Performing minimization step: 2812. Total energy = 2995.7005 kcal/mol (2990.4971 without restraints) Performing minimization step: 2813. Total energy = 2995.3328 kcal/mol (2990.1309 without restraints) Performing minimization step: 2814. Total energy = 2994.9654 kcal/mol (2989.7650 without restraints) Performing minimization step: 2815. Total energy = 2994.5985 kcal/mol (2989.3994 without restraints) Performing minimization step: 2816. Total energy = 2994.2320 kcal/mol (2989.0341 without restraints) Performing minimization step: 2817. Total energy = 2993.8660 kcal/mol (2988.6695 without restraints) Performing minimization step: 2818. Total energy = 2993.5001 kcal/mol (2988.3051 without restraints) Performing minimization step: 2819. Total energy = 2993.1350 kcal/mol (2987.9413 without restraints) Performing minimization step: 2820. Total energy = 2992.7700 kcal/mol (2987.5776 without restraints) Performing minimization step: 2821. Total energy = 2992.4054 kcal/mol (2987.2144 without restraints) Performing minimization step: 2822. Total energy = 2992.0409 kcal/mol (2986.8510 without restraints) Performing minimization step: 2823. Total energy = 2991.6771 kcal/mol (2986.4889 without restraints) Performing minimization step: 2824. Total energy = 2991.3138 kcal/mol (2986.1269 without restraints) Performing minimization step: 2825. Total energy = 2990.9508 kcal/mol (2985.7650 without restraints) Performing minimization step: 2826. Total energy = 2990.5882 kcal/mol (2985.4040 without restraints) Performing minimization step: 2827. Total energy = 2990.2260 kcal/mol (2985.0430 without restraints) Performing minimization step: 2828. Total energy = 2989.8639 kcal/mol (2984.6822 without restraints) Performing minimization step: 2829. Total energy = 2989.5021 kcal/mol (2984.3217 without restraints) Performing minimization step: 2830. Total energy = 2989.1402 kcal/mol (2983.9611 without restraints) Performing minimization step: 2831. Total energy = 2988.7793 kcal/mol (2983.6016 without restraints) Performing minimization step: 2832. Total energy = 2988.4190 kcal/mol (2983.2426 without restraints) Performing minimization step: 2833. Total energy = 2988.0589 kcal/mol (2982.8838 without restraints) Performing minimization step: 2834. Total energy = 2987.6994 kcal/mol (2982.5256 without restraints) Performing minimization step: 2835. Total energy = 2987.3402 kcal/mol (2982.1677 without restraints) Performing minimization step: 2836. Total energy = 2986.9811 kcal/mol (2981.8098 without restraints) Performing minimization step: 2837. Total energy = 2986.6228 kcal/mol (2981.4528 without restraints) Performing minimization step: 2838. Total energy = 2986.2647 kcal/mol (2981.0960 without restraints) Performing minimization step: 2839. Total energy = 2985.9071 kcal/mol (2980.7397 without restraints) Performing minimization step: 2840. Total energy = 2985.5499 kcal/mol (2980.3837 without restraints) Performing minimization step: 2841. Total energy = 2985.1928 kcal/mol (2980.0279 without restraints) Performing minimization step: 2842. Total energy = 2984.8360 kcal/mol (2979.6725 without restraints) Performing minimization step: 2843. Total energy = 2984.4804 kcal/mol (2979.3181 without restraints) Performing minimization step: 2844. Total energy = 2984.1251 kcal/mol (2978.9640 without restraints) Performing minimization step: 2845. Total energy = 2983.7696 kcal/mol (2978.6098 without restraints) Performing minimization step: 2846. Total energy = 2983.4145 kcal/mol (2978.2561 without restraints) Performing minimization step: 2847. Total energy = 2983.0598 kcal/mol (2977.9025 without restraints) Performing minimization step: 2848. Total energy = 2982.7056 kcal/mol (2977.5497 without restraints) Performing minimization step: 2849. Total energy = 2982.3520 kcal/mol (2977.1974 without restraints) Performing minimization step: 2850. Total energy = 2981.9977 kcal/mol (2976.8441 without restraints) Performing minimization step: 2851. Total energy = 2981.6438 kcal/mol (2976.4915 without restraints) Performing minimization step: 2852. Total energy = 2981.2912 kcal/mol (2976.1402 without restraints) Performing minimization step: 2853. Total energy = 2980.9387 kcal/mol (2975.7887 without restraints) Performing minimization step: 2854. Total energy = 2980.5863 kcal/mol (2975.4379 without restraints) Performing minimization step: 2855. Total energy = 2980.2351 kcal/mol (2975.0878 without restraints) Performing minimization step: 2856. Total energy = 2979.8838 kcal/mol (2974.7376 without restraints) Performing minimization step: 2857. Total energy = 2979.5328 kcal/mol (2974.3878 without restraints) Performing minimization step: 2858. Total energy = 2979.1824 kcal/mol (2974.0386 without restraints) Performing minimization step: 2859. Total energy = 2978.8321 kcal/mol (2973.6895 without restraints) Performing minimization step: 2860. Total energy = 2978.4821 kcal/mol (2973.3407 without restraints) Performing minimization step: 2861. Total energy = 2978.1324 kcal/mol (2972.9924 without restraints) Performing minimization step: 2862. Total energy = 2977.7834 kcal/mol (2972.6445 without restraints) Performing minimization step: 2863. Total energy = 2977.4344 kcal/mol (2972.2967 without restraints) Performing minimization step: 2864. Total energy = 2977.0860 kcal/mol (2971.9495 without restraints) Performing minimization step: 2865. Total energy = 2976.7378 kcal/mol (2971.6025 without restraints) Performing minimization step: 2866. Total energy = 2976.3899 kcal/mol (2971.2557 without restraints) Performing minimization step: 2867. Total energy = 2976.0421 kcal/mol (2970.9092 without restraints) Performing minimization step: 2868. Total energy = 2975.6951 kcal/mol (2970.5635 without restraints) Performing minimization step: 2869. Total energy = 2975.3482 kcal/mol (2970.2175 without restraints) Performing minimization step: 2870. Total energy = 2975.0020 kcal/mol (2969.8725 without restraints) Performing minimization step: 2871. Total energy = 2974.6558 kcal/mol (2969.5276 without restraints) Performing minimization step: 2872. Total energy = 2974.3102 kcal/mol (2969.1829 without restraints) Performing minimization step: 2873. Total energy = 2973.9647 kcal/mol (2968.8387 without restraints) Performing minimization step: 2874. Total energy = 2973.6194 kcal/mol (2968.4946 without restraints) Performing minimization step: 2875. Total energy = 2973.2751 kcal/mol (2968.1514 without restraints) Performing minimization step: 2876. Total energy = 2972.9301 kcal/mol (2967.8079 without restraints) Performing minimization step: 2877. Total energy = 2972.5866 kcal/mol (2967.4653 without restraints) Performing minimization step: 2878. Total energy = 2972.2431 kcal/mol (2967.1229 without restraints) Performing minimization step: 2879. Total energy = 2971.9000 kcal/mol (2966.7809 without restraints) Performing minimization step: 2880. Total energy = 2971.5572 kcal/mol (2966.4393 without restraints) Performing minimization step: 2881. Total energy = 2971.2139 kcal/mol (2966.0970 without restraints) Performing minimization step: 2882. Total energy = 2970.8711 kcal/mol (2965.7554 without restraints) Performing minimization step: 2883. Total energy = 2970.5292 kcal/mol (2965.4147 without restraints) Performing minimization step: 2884. Total energy = 2970.1873 kcal/mol (2965.0739 without restraints) Performing minimization step: 2885. Total energy = 2969.8462 kcal/mol (2964.7338 without restraints) Performing minimization step: 2886. Total energy = 2969.5048 kcal/mol (2964.3937 without restraints) Performing minimization step: 2887. Total energy = 2969.1647 kcal/mol (2964.0547 without restraints) Performing minimization step: 2888. Total energy = 2968.8247 kcal/mol (2963.7158 without restraints) Performing minimization step: 2889. Total energy = 2968.4848 kcal/mol (2963.3769 without restraints) Performing minimization step: 2890. Total energy = 2968.1447 kcal/mol (2963.0379 without restraints) Performing minimization step: 2891. Total energy = 2967.8055 kcal/mol (2962.6998 without restraints) Performing minimization step: 2892. Total energy = 2967.4664 kcal/mol (2962.3617 without restraints) Performing minimization step: 2893. Total energy = 2967.1278 kcal/mol (2962.0242 without restraints) Performing minimization step: 2894. Total energy = 2966.7899 kcal/mol (2961.6875 without restraints) Performing minimization step: 2895. Total energy = 2966.4512 kcal/mol (2961.3499 without restraints) Performing minimization step: 2896. Total energy = 2966.1138 kcal/mol (2961.0136 without restraints) Performing minimization step: 2897. Total energy = 2965.7764 kcal/mol (2960.6772 without restraints) Performing minimization step: 2898. Total energy = 2965.4397 kcal/mol (2960.3418 without restraints) Performing minimization step: 2899. Total energy = 2965.1034 kcal/mol (2960.0064 without restraints) Performing minimization step: 2900. Total energy = 2964.7670 kcal/mol (2959.6710 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 2964.4311 kcal/mol (2959.3362 without restraints) Performing minimization step: 2902. Total energy = 2964.0956 kcal/mol (2959.0018 without restraints) Performing minimization step: 2903. Total energy = 2963.7605 kcal/mol (2958.6677 without restraints) Performing minimization step: 2904. Total energy = 2963.4262 kcal/mol (2958.3344 without restraints) Performing minimization step: 2905. Total energy = 2963.0920 kcal/mol (2958.0013 without restraints) Performing minimization step: 2906. Total energy = 2962.7583 kcal/mol (2957.6687 without restraints) Performing minimization step: 2907. Total energy = 2962.4245 kcal/mol (2957.3359 without restraints) Performing minimization step: 2908. Total energy = 2962.0913 kcal/mol (2957.0037 without restraints) Performing minimization step: 2909. Total energy = 2961.7581 kcal/mol (2956.6717 without restraints) Performing minimization step: 2910. Total energy = 2961.4253 kcal/mol (2956.3398 without restraints) Performing minimization step: 2911. Total energy = 2961.0929 kcal/mol (2956.0084 without restraints) Performing minimization step: 2912. Total energy = 2960.7607 kcal/mol (2955.6772 without restraints) Performing minimization step: 2913. Total energy = 2960.4291 kcal/mol (2955.3466 without restraints) Performing minimization step: 2914. Total energy = 2960.0975 kcal/mol (2955.0160 without restraints) Performing minimization step: 2915. Total energy = 2959.7664 kcal/mol (2954.6860 without restraints) Performing minimization step: 2916. Total energy = 2959.4358 kcal/mol (2954.3565 without restraints) Performing minimization step: 2917. Total energy = 2959.1054 kcal/mol (2954.0270 without restraints) Performing minimization step: 2918. Total energy = 2958.7749 kcal/mol (2953.6975 without restraints) Performing minimization step: 2919. Total energy = 2958.4452 kcal/mol (2953.3689 without restraints) Performing minimization step: 2920. Total energy = 2958.1155 kcal/mol (2953.0400 without restraints) Performing minimization step: 2921. Total energy = 2957.7863 kcal/mol (2952.7120 without restraints) Performing minimization step: 2922. Total energy = 2957.4575 kcal/mol (2952.3840 without restraints) Performing minimization step: 2923. Total energy = 2957.1285 kcal/mol (2952.0562 without restraints) Performing minimization step: 2924. Total energy = 2956.8001 kcal/mol (2951.7287 without restraints) Performing minimization step: 2925. Total energy = 2956.4721 kcal/mol (2951.4016 without restraints) Performing minimization step: 2926. Total energy = 2956.1447 kcal/mol (2951.0752 without restraints) Performing minimization step: 2927. Total energy = 2955.8175 kcal/mol (2950.7490 without restraints) Performing minimization step: 2928. Total energy = 2955.4908 kcal/mol (2950.4233 without restraints) Performing minimization step: 2929. Total energy = 2955.1642 kcal/mol (2950.0977 without restraints) Performing minimization step: 2930. Total energy = 2954.8383 kcal/mol (2949.7728 without restraints) Performing minimization step: 2931. Total energy = 2954.5125 kcal/mol (2949.4479 without restraints) Performing minimization step: 2932. Total energy = 2954.1867 kcal/mol (2949.1231 without restraints) Performing minimization step: 2933. Total energy = 2953.8614 kcal/mol (2948.7987 without restraints) Performing minimization step: 2934. Total energy = 2953.5365 kcal/mol (2948.4748 without restraints) Performing minimization step: 2935. Total energy = 2953.2112 kcal/mol (2948.1504 without restraints) Performing minimization step: 2936. Total energy = 2952.8865 kcal/mol (2947.8267 without restraints) Performing minimization step: 2937. Total energy = 2952.5626 kcal/mol (2947.5039 without restraints) Performing minimization step: 2938. Total energy = 2952.2389 kcal/mol (2947.1809 without restraints) Performing minimization step: 2939. Total energy = 2951.9148 kcal/mol (2946.8577 without restraints) Performing minimization step: 2940. Total energy = 2951.5917 kcal/mol (2946.5357 without restraints) Performing minimization step: 2941. Total energy = 2951.2695 kcal/mol (2946.2143 without restraints) Performing minimization step: 2942. Total energy = 2950.9469 kcal/mol (2945.8929 without restraints) Performing minimization step: 2943. Total energy = 2950.6253 kcal/mol (2945.5719 without restraints) Performing minimization step: 2944. Total energy = 2950.3033 kcal/mol (2945.2509 without restraints) Performing minimization step: 2945. Total energy = 2949.9816 kcal/mol (2944.9300 without restraints) Performing minimization step: 2946. Total energy = 2949.6600 kcal/mol (2944.6094 without restraints) Performing minimization step: 2947. Total energy = 2949.3392 kcal/mol (2944.2896 without restraints) Performing minimization step: 2948. Total energy = 2949.0190 kcal/mol (2943.9702 without restraints) Performing minimization step: 2949. Total energy = 2948.6985 kcal/mol (2943.6505 without restraints) Performing minimization step: 2950. Total energy = 2948.3781 kcal/mol (2943.3311 without restraints) Performing minimization step: 2951. Total energy = 2948.0583 kcal/mol (2943.0122 without restraints) Performing minimization step: 2952. Total energy = 2947.7390 kcal/mol (2942.6940 without restraints) Performing minimization step: 2953. Total energy = 2947.4206 kcal/mol (2942.3764 without restraints) Performing minimization step: 2954. Total energy = 2947.1018 kcal/mol (2942.0584 without restraints) Performing minimization step: 2955. Total energy = 2946.7833 kcal/mol (2941.7408 without restraints) Performing minimization step: 2956. Total energy = 2946.4659 kcal/mol (2941.4243 without restraints) Performing minimization step: 2957. Total energy = 2946.1485 kcal/mol (2941.1076 without restraints) Performing minimization step: 2958. Total energy = 2945.8308 kcal/mol (2940.7906 without restraints) Performing minimization step: 2959. Total energy = 2945.5132 kcal/mol (2940.4741 without restraints) Performing minimization step: 2960. Total energy = 2945.1962 kcal/mol (2940.1582 without restraints) Performing minimization step: 2961. Total energy = 2944.8796 kcal/mol (2939.8422 without restraints) Performing minimization step: 2962. Total energy = 2944.5633 kcal/mol (2939.5269 without restraints) Performing minimization step: 2963. Total energy = 2944.2478 kcal/mol (2939.2123 without restraints) Performing minimization step: 2964. Total energy = 2943.9316 kcal/mol (2938.8969 without restraints) Performing minimization step: 2965. Total energy = 2943.6167 kcal/mol (2938.5828 without restraints) Performing minimization step: 2966. Total energy = 2943.3012 kcal/mol (2938.2681 without restraints) Performing minimization step: 2967. Total energy = 2942.9869 kcal/mol (2937.9547 without restraints) Performing minimization step: 2968. Total energy = 2942.6727 kcal/mol (2937.6414 without restraints) Performing minimization step: 2969. Total energy = 2942.3586 kcal/mol (2937.3283 without restraints) Performing minimization step: 2970. Total energy = 2942.0449 kcal/mol (2937.0154 without restraints) Performing minimization step: 2971. Total energy = 2941.7315 kcal/mol (2936.7029 without restraints) Performing minimization step: 2972. Total energy = 2941.4184 kcal/mol (2936.3903 without restraints) Performing minimization step: 2973. Total energy = 2941.1051 kcal/mol (2936.0778 without restraints) Performing minimization step: 2974. Total energy = 2940.7919 kcal/mol (2935.7656 without restraints) Performing minimization step: 2975. Total energy = 2940.4796 kcal/mol (2935.4540 without restraints) Performing minimization step: 2976. Total energy = 2940.1680 kcal/mol (2935.1433 without restraints) Performing minimization step: 2977. Total energy = 2939.8558 kcal/mol (2934.8319 without restraints) Performing minimization step: 2978. Total energy = 2939.5441 kcal/mol (2934.5209 without restraints) Performing minimization step: 2979. Total energy = 2939.2325 kcal/mol (2934.2103 without restraints) Performing minimization step: 2980. Total energy = 2938.9216 kcal/mol (2933.9001 without restraints) Performing minimization step: 2981. Total energy = 2938.6110 kcal/mol (2933.5903 without restraints) Performing minimization step: 2982. Total energy = 2938.3006 kcal/mol (2933.2807 without restraints) Performing minimization step: 2983. Total energy = 2937.9906 kcal/mol (2932.9714 without restraints) Performing minimization step: 2984. Total energy = 2937.6807 kcal/mol (2932.6623 without restraints) Performing minimization step: 2985. Total energy = 2937.3711 kcal/mol (2932.3535 without restraints) Performing minimization step: 2986. Total energy = 2937.0619 kcal/mol (2932.0452 without restraints) Performing minimization step: 2987. Total energy = 2936.7534 kcal/mol (2931.7375 without restraints) Performing minimization step: 2988. Total energy = 2936.4449 kcal/mol (2931.4298 without restraints) Performing minimization step: 2989. Total energy = 2936.1367 kcal/mol (2931.1222 without restraints) Performing minimization step: 2990. Total energy = 2935.8284 kcal/mol (2930.8148 without restraints) Performing minimization step: 2991. Total energy = 2935.5207 kcal/mol (2930.5079 without restraints) Performing minimization step: 2992. Total energy = 2935.2136 kcal/mol (2930.2015 without restraints) Performing minimization step: 2993. Total energy = 2934.9063 kcal/mol (2929.8949 without restraints) Performing minimization step: 2994. Total energy = 2934.5997 kcal/mol (2929.5893 without restraints) Performing minimization step: 2995. Total energy = 2934.2932 kcal/mol (2929.2833 without restraints) Performing minimization step: 2996. Total energy = 2933.9867 kcal/mol (2928.9776 without restraints) Performing minimization step: 2997. Total energy = 2933.6805 kcal/mol (2928.6722 without restraints) Performing minimization step: 2998. Total energy = 2933.3748 kcal/mol (2928.3672 without restraints) Performing minimization step: 2999. Total energy = 2933.0693 kcal/mol (2928.0624 without restraints) Performing minimization step: 3000. Total energy = 2932.7639 kcal/mol (2927.7578 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 2932.4592 kcal/mol (2927.4538 without restraints) Performing minimization step: 3002. Total energy = 2932.1544 kcal/mol (2927.1496 without restraints) Performing minimization step: 3003. Total energy = 2931.8499 kcal/mol (2926.8459 without restraints) Performing minimization step: 3004. Total energy = 2931.5457 kcal/mol (2926.5426 without restraints) Performing minimization step: 3005. Total energy = 2931.2416 kcal/mol (2926.2391 without restraints) Performing minimization step: 3006. Total energy = 2930.9383 kcal/mol (2925.9366 without restraints) Performing minimization step: 3007. Total energy = 2930.6349 kcal/mol (2925.6338 without restraints) Performing minimization step: 3008. Total energy = 2930.3320 kcal/mol (2925.3319 without restraints) Performing minimization step: 3009. Total energy = 2930.0297 kcal/mol (2925.0302 without restraints) Performing minimization step: 3010. Total energy = 2929.7277 kcal/mol (2924.7287 without restraints) Performing minimization step: 3011. Total energy = 2929.4249 kcal/mol (2924.4268 without restraints) Performing minimization step: 3012. Total energy = 2929.1230 kcal/mol (2924.1256 without restraints) Performing minimization step: 3013. Total energy = 2928.8214 kcal/mol (2923.8246 without restraints) Performing minimization step: 3014. Total energy = 2928.5199 kcal/mol (2923.5240 without restraints) Performing minimization step: 3015. Total energy = 2928.2196 kcal/mol (2923.2243 without restraints) Performing minimization step: 3016. Total energy = 2927.9188 kcal/mol (2922.9241 without restraints) Performing minimization step: 3017. Total energy = 2927.6182 kcal/mol (2922.6242 without restraints) Performing minimization step: 3018. Total energy = 2927.3181 kcal/mol (2922.3248 without restraints) Performing minimization step: 3019. Total energy = 2927.0179 kcal/mol (2922.0253 without restraints) Performing minimization step: 3020. Total energy = 2926.7187 kcal/mol (2921.7268 without restraints) Performing minimization step: 3021. Total energy = 2926.4189 kcal/mol (2921.4276 without restraints) Performing minimization step: 3022. Total energy = 2926.1202 kcal/mol (2921.1296 without restraints) Performing minimization step: 3023. Total energy = 2925.8216 kcal/mol (2920.8317 without restraints) Performing minimization step: 3024. Total energy = 2925.5230 kcal/mol (2920.5337 without restraints) Performing minimization step: 3025. Total energy = 2925.2252 kcal/mol (2920.2366 without restraints) Performing minimization step: 3026. Total energy = 2924.9276 kcal/mol (2919.9398 without restraints) Performing minimization step: 3027. Total energy = 2924.6310 kcal/mol (2919.6437 without restraints) Performing minimization step: 3028. Total energy = 2924.3335 kcal/mol (2919.3469 without restraints) Performing minimization step: 3029. Total energy = 2924.0363 kcal/mol (2919.0503 without restraints) Performing minimization step: 3030. Total energy = 2923.7394 kcal/mol (2918.7541 without restraints) Performing minimization step: 3031. Total energy = 2923.4427 kcal/mol (2918.4580 without restraints) Performing minimization step: 3032. Total energy = 2923.1462 kcal/mol (2918.1622 without restraints) Performing minimization step: 3033. Total energy = 2922.8502 kcal/mol (2917.8669 without restraints) Performing minimization step: 3034. Total energy = 2922.5544 kcal/mol (2917.5716 without restraints) Performing minimization step: 3035. Total energy = 2922.2590 kcal/mol (2917.2769 without restraints) Performing minimization step: 3036. Total energy = 2921.9636 kcal/mol (2916.9821 without restraints) Performing minimization step: 3037. Total energy = 2921.6687 kcal/mol (2916.6881 without restraints) Performing minimization step: 3038. Total energy = 2921.3742 kcal/mol (2916.3940 without restraints) Performing minimization step: 3039. Total energy = 2921.0800 kcal/mol (2916.1004 without restraints) Performing minimization step: 3040. Total energy = 2920.7857 kcal/mol (2915.8067 without restraints) Performing minimization step: 3041. Total energy = 2920.4916 kcal/mol (2915.5133 without restraints) Performing minimization step: 3042. Total energy = 2920.1980 kcal/mol (2915.2203 without restraints) Performing minimization step: 3043. Total energy = 2919.9049 kcal/mol (2914.9278 without restraints) Performing minimization step: 3044. Total energy = 2919.6116 kcal/mol (2914.6352 without restraints) Performing minimization step: 3045. Total energy = 2919.3182 kcal/mol (2914.3423 without restraints) Performing minimization step: 3046. Total energy = 2919.0255 kcal/mol (2914.0502 without restraints) Performing minimization step: 3047. Total energy = 2918.7337 kcal/mol (2913.7592 without restraints) Performing minimization step: 3048. Total energy = 2918.4419 kcal/mol (2913.4678 without restraints) Performing minimization step: 3049. Total energy = 2918.1506 kcal/mol (2913.1773 without restraints) Performing minimization step: 3050. Total energy = 2917.8591 kcal/mol (2912.8862 without restraints) Performing minimization step: 3051. Total energy = 2917.5680 kcal/mol (2912.5958 without restraints) Performing minimization step: 3052. Total energy = 2917.2769 kcal/mol (2912.3052 without restraints) Performing minimization step: 3053. Total energy = 2916.9861 kcal/mol (2912.0149 without restraints) Performing minimization step: 3054. Total energy = 2916.6955 kcal/mol (2911.7249 without restraints) Performing minimization step: 3055. Total energy = 2916.4057 kcal/mol (2911.4357 without restraints) Performing minimization step: 3056. Total energy = 2916.1158 kcal/mol (2911.1464 without restraints) Performing minimization step: 3057. Total energy = 2915.8259 kcal/mol (2910.8571 without restraints) Performing minimization step: 3058. Total energy = 2915.5372 kcal/mol (2910.5689 without restraints) Performing minimization step: 3059. Total energy = 2915.2484 kcal/mol (2910.2807 without restraints) Performing minimization step: 3060. Total energy = 2914.9590 kcal/mol (2909.9919 without restraints) Performing minimization step: 3061. Total energy = 2914.6703 kcal/mol (2909.7038 without restraints) Performing minimization step: 3062. Total energy = 2914.3821 kcal/mol (2909.4162 without restraints) Performing minimization step: 3063. Total energy = 2914.0938 kcal/mol (2909.1284 without restraints) Performing minimization step: 3064. Total energy = 2913.8061 kcal/mol (2908.8413 without restraints) Performing minimization step: 3065. Total energy = 2913.5186 kcal/mol (2908.5543 without restraints) Performing minimization step: 3066. Total energy = 2913.2315 kcal/mol (2908.2677 without restraints) Performing minimization step: 3067. Total energy = 2912.9441 kcal/mol (2907.9807 without restraints) Performing minimization step: 3068. Total energy = 2912.6569 kcal/mol (2907.6942 without restraints) Performing minimization step: 3069. Total energy = 2912.3700 kcal/mol (2907.4075 without restraints) Performing minimization step: 3070. Total energy = 2912.0833 kcal/mol (2907.1216 without restraints) Performing minimization step: 3071. Total energy = 2911.7974 kcal/mol (2906.8363 without restraints) Performing minimization step: 3072. Total energy = 2911.5115 kcal/mol (2906.5510 without restraints) Performing minimization step: 3073. Total energy = 2911.2257 kcal/mol (2906.2656 without restraints) Performing minimization step: 3074. Total energy = 2910.9402 kcal/mol (2905.9806 without restraints) Performing minimization step: 3075. Total energy = 2910.6547 kcal/mol (2905.6956 without restraints) Performing minimization step: 3076. Total energy = 2910.3696 kcal/mol (2905.4111 without restraints) Performing minimization step: 3077. Total energy = 2910.0850 kcal/mol (2905.1270 without restraints) Performing minimization step: 3078. Total energy = 2909.8009 kcal/mol (2904.8434 without restraints) Performing minimization step: 3079. Total energy = 2909.5168 kcal/mol (2904.5599 without restraints) Performing minimization step: 3080. Total energy = 2909.2335 kcal/mol (2904.2772 without restraints) Performing minimization step: 3081. Total energy = 2908.9498 kcal/mol (2903.9937 without restraints) Performing minimization step: 3082. Total energy = 2908.6659 kcal/mol (2903.7105 without restraints) Performing minimization step: 3083. Total energy = 2908.3829 kcal/mol (2903.4280 without restraints) Performing minimization step: 3084. Total energy = 2908.0998 kcal/mol (2903.1454 without restraints) Performing minimization step: 3085. Total energy = 2907.8172 kcal/mol (2902.8633 without restraints) Performing minimization step: 3086. Total energy = 2907.5348 kcal/mol (2902.5815 without restraints) Performing minimization step: 3087. Total energy = 2907.2535 kcal/mol (2902.3005 without restraints) Performing minimization step: 3088. Total energy = 2906.9714 kcal/mol (2902.0190 without restraints) Performing minimization step: 3089. Total energy = 2906.6899 kcal/mol (2901.7379 without restraints) Performing minimization step: 3090. Total energy = 2906.4087 kcal/mol (2901.4572 without restraints) Performing minimization step: 3091. Total energy = 2906.1274 kcal/mol (2901.1764 without restraints) Performing minimization step: 3092. Total energy = 2905.8465 kcal/mol (2900.8960 without restraints) Performing minimization step: 3093. Total energy = 2905.5658 kcal/mol (2900.6157 without restraints) Performing minimization step: 3094. Total energy = 2905.2852 kcal/mol (2900.3355 without restraints) Performing minimization step: 3095. Total energy = 2905.0047 kcal/mol (2900.0555 without restraints) Performing minimization step: 3096. Total energy = 2904.7250 kcal/mol (2899.7763 without restraints) Performing minimization step: 3097. Total energy = 2904.4453 kcal/mol (2899.4971 without restraints) Performing minimization step: 3098. Total energy = 2904.1659 kcal/mol (2899.2181 without restraints) Performing minimization step: 3099. Total energy = 2903.8868 kcal/mol (2898.9396 without restraints) Performing minimization step: 3100. Total energy = 2903.6079 kcal/mol (2898.6610 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 2903.3295 kcal/mol (2898.3831 without restraints) Performing minimization step: 3102. Total energy = 2903.0514 kcal/mol (2898.1054 without restraints) Performing minimization step: 3103. Total energy = 2902.7729 kcal/mol (2897.8274 without restraints) Performing minimization step: 3104. Total energy = 2902.4951 kcal/mol (2897.5500 without restraints) Performing minimization step: 3105. Total energy = 2902.2172 kcal/mol (2897.2726 without restraints) Performing minimization step: 3106. Total energy = 2901.9400 kcal/mol (2896.9958 without restraints) Performing minimization step: 3107. Total energy = 2901.6625 kcal/mol (2896.7188 without restraints) Performing minimization step: 3108. Total energy = 2901.3854 kcal/mol (2896.4420 without restraints) Performing minimization step: 3109. Total energy = 2901.1087 kcal/mol (2896.1658 without restraints) Performing minimization step: 3110. Total energy = 2900.8323 kcal/mol (2895.8898 without restraints) Performing minimization step: 3111. Total energy = 2900.5564 kcal/mol (2895.6142 without restraints) Performing minimization step: 3112. Total energy = 2900.2800 kcal/mol (2895.3384 without restraints) Performing minimization step: 3113. Total energy = 2900.0040 kcal/mol (2895.0628 without restraints) Performing minimization step: 3114. Total energy = 2899.7282 kcal/mol (2894.7874 without restraints) Performing minimization step: 3115. Total energy = 2899.4522 kcal/mol (2894.5118 without restraints) Performing minimization step: 3116. Total energy = 2899.1766 kcal/mol (2894.2366 without restraints) Performing minimization step: 3117. Total energy = 2898.9012 kcal/mol (2893.9617 without restraints) Performing minimization step: 3118. Total energy = 2898.6264 kcal/mol (2893.6873 without restraints) Performing minimization step: 3119. Total energy = 2898.3517 kcal/mol (2893.4130 without restraints) Performing minimization step: 3120. Total energy = 2898.0772 kcal/mol (2893.1389 without restraints) Performing minimization step: 3121. Total energy = 2897.8030 kcal/mol (2892.8652 without restraints) Performing minimization step: 3122. Total energy = 2897.5292 kcal/mol (2892.5916 without restraints) Performing minimization step: 3123. Total energy = 2897.2556 kcal/mol (2892.3187 without restraints) Performing minimization step: 3124. Total energy = 2896.9825 kcal/mol (2892.0457 without restraints) Performing minimization step: 3125. Total energy = 2896.7092 kcal/mol (2891.7729 without restraints) Performing minimization step: 3126. Total energy = 2896.4361 kcal/mol (2891.5001 without restraints) Performing minimization step: 3127. Total energy = 2896.1639 kcal/mol (2891.2283 without restraints) Performing minimization step: 3128. Total energy = 2895.8912 kcal/mol (2890.9560 without restraints) Performing minimization step: 3129. Total energy = 2895.6196 kcal/mol (2890.6850 without restraints) Performing minimization step: 3130. Total energy = 2895.3478 kcal/mol (2890.4133 without restraints) Performing minimization step: 3131. Total energy = 2895.0759 kcal/mol (2890.1418 without restraints) Performing minimization step: 3132. Total energy = 2894.8053 kcal/mol (2889.8715 without restraints) Performing minimization step: 3133. Total energy = 2894.5339 kcal/mol (2889.6005 without restraints) Performing minimization step: 3134. Total energy = 2894.2626 kcal/mol (2889.3296 without restraints) Performing minimization step: 3135. Total energy = 2893.9916 kcal/mol (2889.0590 without restraints) Performing minimization step: 3136. Total energy = 2893.7215 kcal/mol (2888.7893 without restraints) Performing minimization step: 3137. Total energy = 2893.4516 kcal/mol (2888.5197 without restraints) Performing minimization step: 3138. Total energy = 2893.1812 kcal/mol (2888.2497 without restraints) Performing minimization step: 3139. Total energy = 2892.9112 kcal/mol (2887.9800 without restraints) Performing minimization step: 3140. Total energy = 2892.6413 kcal/mol (2887.7104 without restraints) Performing minimization step: 3141. Total energy = 2892.3710 kcal/mol (2887.4405 without restraints) Performing minimization step: 3142. Total energy = 2892.1015 kcal/mol (2887.1713 without restraints) Performing minimization step: 3143. Total energy = 2891.8322 kcal/mol (2886.9024 without restraints) Performing minimization step: 3144. Total energy = 2891.5633 kcal/mol (2886.6338 without restraints) Performing minimization step: 3145. Total energy = 2891.2941 kcal/mol (2886.3650 without restraints) Performing minimization step: 3146. Total energy = 2891.0257 kcal/mol (2886.0970 without restraints) Performing minimization step: 3147. Total energy = 2890.7573 kcal/mol (2885.8288 without restraints) Performing minimization step: 3148. Total energy = 2890.4896 kcal/mol (2885.5615 without restraints) Performing minimization step: 3149. Total energy = 2890.2217 kcal/mol (2885.2939 without restraints) Performing minimization step: 3150. Total energy = 2889.9542 kcal/mol (2885.0268 without restraints) Performing minimization step: 3151. Total energy = 2889.6873 kcal/mol (2884.7601 without restraints) Performing minimization step: 3152. Total energy = 2889.4202 kcal/mol (2884.4934 without restraints) Performing minimization step: 3153. Total energy = 2889.1532 kcal/mol (2884.2267 without restraints) Performing minimization step: 3154. Total energy = 2888.8860 kcal/mol (2883.9597 without restraints) Performing minimization step: 3155. Total energy = 2888.6193 kcal/mol (2883.6934 without restraints) Performing minimization step: 3156. Total energy = 2888.3537 kcal/mol (2883.4281 without restraints) Performing minimization step: 3157. Total energy = 2888.0875 kcal/mol (2883.1623 without restraints) Performing minimization step: 3158. Total energy = 2887.8219 kcal/mol (2882.8969 without restraints) Performing minimization step: 3159. Total energy = 2887.5560 kcal/mol (2882.6313 without restraints) Performing minimization step: 3160. Total energy = 2887.2904 kcal/mol (2882.3659 without restraints) Performing minimization step: 3161. Total energy = 2887.0250 kcal/mol (2882.1009 without restraints) Performing minimization step: 3162. Total energy = 2886.7602 kcal/mol (2881.8364 without restraints) Performing minimization step: 3163. Total energy = 2886.4953 kcal/mol (2881.5718 without restraints) Performing minimization step: 3164. Total energy = 2886.2307 kcal/mol (2881.3075 without restraints) Performing minimization step: 3165. Total energy = 2885.9665 kcal/mol (2881.0436 without restraints) Performing minimization step: 3166. Total energy = 2885.7021 kcal/mol (2880.7795 without restraints) Performing minimization step: 3167. Total energy = 2885.4382 kcal/mol (2880.5158 without restraints) Performing minimization step: 3168. Total energy = 2885.1743 kcal/mol (2880.2523 without restraints) Performing minimization step: 3169. Total energy = 2884.9108 kcal/mol (2879.9890 without restraints) Performing minimization step: 3170. Total energy = 2884.6477 kcal/mol (2879.7262 without restraints) Performing minimization step: 3171. Total energy = 2884.3849 kcal/mol (2879.4636 without restraints) Performing minimization step: 3172. Total energy = 2884.1218 kcal/mol (2879.2008 without restraints) Performing minimization step: 3173. Total energy = 2883.8590 kcal/mol (2878.9382 without restraints) Performing minimization step: 3174. Total energy = 2883.5965 kcal/mol (2878.6760 without restraints) Performing minimization step: 3175. Total energy = 2883.3339 kcal/mol (2878.4137 without restraints) Performing minimization step: 3176. Total energy = 2883.0719 kcal/mol (2878.1520 without restraints) Performing minimization step: 3177. Total energy = 2882.8102 kcal/mol (2877.8905 without restraints) Performing minimization step: 3178. Total energy = 2882.5483 kcal/mol (2877.6289 without restraints) Performing minimization step: 3179. Total energy = 2882.2868 kcal/mol (2877.3675 without restraints) Performing minimization step: 3180. Total energy = 2882.0255 kcal/mol (2877.1067 without restraints) Performing minimization step: 3181. Total energy = 2881.7646 kcal/mol (2876.8460 without restraints) Performing minimization step: 3182. Total energy = 2881.5039 kcal/mol (2876.5855 without restraints) Performing minimization step: 3183. Total energy = 2881.2430 kcal/mol (2876.3248 without restraints) Performing minimization step: 3184. Total energy = 2880.9825 kcal/mol (2876.0646 without restraints) Performing minimization step: 3185. Total energy = 2880.7224 kcal/mol (2875.8047 without restraints) Performing minimization step: 3186. Total energy = 2880.4625 kcal/mol (2875.5450 without restraints) Performing minimization step: 3187. Total energy = 2880.2024 kcal/mol (2875.2852 without restraints) Performing minimization step: 3188. Total energy = 2879.9429 kcal/mol (2875.0259 without restraints) Performing minimization step: 3189. Total energy = 2879.6836 kcal/mol (2874.7668 without restraints) Performing minimization step: 3190. Total energy = 2879.4248 kcal/mol (2874.5083 without restraints) Performing minimization step: 3191. Total energy = 2879.1659 kcal/mol (2874.2496 without restraints) Performing minimization step: 3192. Total energy = 2878.9072 kcal/mol (2873.9911 without restraints) Performing minimization step: 3193. Total energy = 2878.6494 kcal/mol (2873.7336 without restraints) Performing minimization step: 3194. Total energy = 2878.3913 kcal/mol (2873.4757 without restraints) Performing minimization step: 3195. Total energy = 2878.1333 kcal/mol (2873.2179 without restraints) Performing minimization step: 3196. Total energy = 2877.8752 kcal/mol (2872.9599 without restraints) Performing minimization step: 3197. Total energy = 2877.6174 kcal/mol (2872.7024 without restraints) Performing minimization step: 3198. Total energy = 2877.3599 kcal/mol (2872.4451 without restraints) Performing minimization step: 3199. Total energy = 2877.1028 kcal/mol (2872.1883 without restraints) Performing minimization step: 3200. Total energy = 2876.8461 kcal/mol (2871.9317 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 2876.5892 kcal/mol (2871.6750 without restraints) Performing minimization step: 3202. Total energy = 2876.3323 kcal/mol (2871.4182 without restraints) Performing minimization step: 3203. Total energy = 2876.0758 kcal/mol (2871.1620 without restraints) Performing minimization step: 3204. Total energy = 2875.8193 kcal/mol (2870.9057 without restraints) Performing minimization step: 3205. Total energy = 2875.5634 kcal/mol (2870.6500 without restraints) Performing minimization step: 3206. Total energy = 2875.3075 kcal/mol (2870.3944 without restraints) Performing minimization step: 3207. Total energy = 2875.0517 kcal/mol (2870.1387 without restraints) Performing minimization step: 3208. Total energy = 2874.7962 kcal/mol (2869.8834 without restraints) Performing minimization step: 3209. Total energy = 2874.5411 kcal/mol (2869.6285 without restraints) Performing minimization step: 3210. Total energy = 2874.2862 kcal/mol (2869.3738 without restraints) Performing minimization step: 3211. Total energy = 2874.0316 kcal/mol (2869.1194 without restraints) Performing minimization step: 3212. Total energy = 2873.7768 kcal/mol (2868.8646 without restraints) Performing minimization step: 3213. Total energy = 2873.5227 kcal/mol (2868.6108 without restraints) Performing minimization step: 3214. Total energy = 2873.2684 kcal/mol (2868.3566 without restraints) Performing minimization step: 3215. Total energy = 2873.0142 kcal/mol (2868.1027 without restraints) Performing minimization step: 3216. Total energy = 2872.7609 kcal/mol (2867.8494 without restraints) Performing minimization step: 3217. Total energy = 2872.5071 kcal/mol (2867.5959 without restraints) Performing minimization step: 3218. Total energy = 2872.2538 kcal/mol (2867.3428 without restraints) Performing minimization step: 3219. Total energy = 2872.0004 kcal/mol (2867.0895 without restraints) Performing minimization step: 3220. Total energy = 2871.7473 kcal/mol (2866.8366 without restraints) Performing minimization step: 3221. Total energy = 2871.4941 kcal/mol (2866.5834 without restraints) Performing minimization step: 3222. Total energy = 2871.2415 kcal/mol (2866.3312 without restraints) Performing minimization step: 3223. Total energy = 2870.9894 kcal/mol (2866.0792 without restraints) Performing minimization step: 3224. Total energy = 2870.7372 kcal/mol (2865.8272 without restraints) Performing minimization step: 3225. Total energy = 2870.4853 kcal/mol (2865.5753 without restraints) Performing minimization step: 3226. Total energy = 2870.2334 kcal/mol (2865.3236 without restraints) Performing minimization step: 3227. Total energy = 2869.9817 kcal/mol (2865.0720 without restraints) Performing minimization step: 3228. Total energy = 2869.7302 kcal/mol (2864.8207 without restraints) Performing minimization step: 3229. Total energy = 2869.4789 kcal/mol (2864.5695 without restraints) Performing minimization step: 3230. Total energy = 2869.2282 kcal/mol (2864.3190 without restraints) Performing minimization step: 3231. Total energy = 2868.9775 kcal/mol (2864.0685 without restraints) Performing minimization step: 3232. Total energy = 2868.7270 kcal/mol (2863.8180 without restraints) Performing minimization step: 3233. Total energy = 2868.4768 kcal/mol (2863.5679 without restraints) Performing minimization step: 3234. Total energy = 2868.2265 kcal/mol (2863.3178 without restraints) Performing minimization step: 3235. Total energy = 2867.9760 kcal/mol (2863.0674 without restraints) Performing minimization step: 3236. Total energy = 2867.7261 kcal/mol (2862.8177 without restraints) Performing minimization step: 3237. Total energy = 2867.4765 kcal/mol (2862.5681 without restraints) Performing minimization step: 3238. Total energy = 2867.2272 kcal/mol (2862.3191 without restraints) Performing minimization step: 3239. Total energy = 2866.9781 kcal/mol (2862.0701 without restraints) Performing minimization step: 3240. Total energy = 2866.7291 kcal/mol (2861.8213 without restraints) Performing minimization step: 3241. Total energy = 2866.4802 kcal/mol (2861.5723 without restraints) Performing minimization step: 3242. Total energy = 2866.2313 kcal/mol (2861.3235 without restraints) Performing minimization step: 3243. Total energy = 2865.9826 kcal/mol (2861.0749 without restraints) Performing minimization step: 3244. Total energy = 2865.7344 kcal/mol (2860.8268 without restraints) Performing minimization step: 3245. Total energy = 2865.4862 kcal/mol (2860.5787 without restraints) Performing minimization step: 3246. Total energy = 2865.2380 kcal/mol (2860.3307 without restraints) Performing minimization step: 3247. Total energy = 2864.9902 kcal/mol (2860.0828 without restraints) Performing minimization step: 3248. Total energy = 2864.7425 kcal/mol (2859.8354 without restraints) Performing minimization step: 3249. Total energy = 2864.4949 kcal/mol (2859.5879 without restraints) Performing minimization step: 3250. Total energy = 2864.2474 kcal/mol (2859.3404 without restraints) Performing minimization step: 3251. Total energy = 2864.0001 kcal/mol (2859.0933 without restraints) Performing minimization step: 3252. Total energy = 2863.7539 kcal/mol (2858.8471 without restraints) Performing minimization step: 3253. Total energy = 2863.5071 kcal/mol (2858.6004 without restraints) Performing minimization step: 3254. Total energy = 2863.2607 kcal/mol (2858.3543 without restraints) Performing minimization step: 3255. Total energy = 2863.0144 kcal/mol (2858.1079 without restraints) Performing minimization step: 3256. Total energy = 2862.7681 kcal/mol (2857.8617 without restraints) Performing minimization step: 3257. Total energy = 2862.5219 kcal/mol (2857.6156 without restraints) Performing minimization step: 3258. Total energy = 2862.2760 kcal/mol (2857.3697 without restraints) Performing minimization step: 3259. Total energy = 2862.0306 kcal/mol (2857.1244 without restraints) Performing minimization step: 3260. Total energy = 2861.7849 kcal/mol (2856.8788 without restraints) Performing minimization step: 3261. Total energy = 2861.5394 kcal/mol (2856.6333 without restraints) Performing minimization step: 3262. Total energy = 2861.2941 kcal/mol (2856.3882 without restraints) Performing minimization step: 3263. Total energy = 2861.0491 kcal/mol (2856.1432 without restraints) Performing minimization step: 3264. Total energy = 2860.8042 kcal/mol (2855.8984 without restraints) Performing minimization step: 3265. Total energy = 2860.5599 kcal/mol (2855.6541 without restraints) Performing minimization step: 3266. Total energy = 2860.3154 kcal/mol (2855.4097 without restraints) Performing minimization step: 3267. Total energy = 2860.0711 kcal/mol (2855.1656 without restraints) Performing minimization step: 3268. Total energy = 2859.8277 kcal/mol (2854.9221 without restraints) Performing minimization step: 3269. Total energy = 2859.5836 kcal/mol (2854.6781 without restraints) Performing minimization step: 3270. Total energy = 2859.3396 kcal/mol (2854.4341 without restraints) Performing minimization step: 3271. Total energy = 2859.0962 kcal/mol (2854.1908 without restraints) Performing minimization step: 3272. Total energy = 2858.8530 kcal/mol (2853.9476 without restraints) Performing minimization step: 3273. Total energy = 2858.6097 kcal/mol (2853.7044 without restraints) Performing minimization step: 3274. Total energy = 2858.3667 kcal/mol (2853.4614 without restraints) Performing minimization step: 3275. Total energy = 2858.1239 kcal/mol (2853.2187 without restraints) Performing minimization step: 3276. Total energy = 2857.8812 kcal/mol (2852.9761 without restraints) Performing minimization step: 3277. Total energy = 2857.6387 kcal/mol (2852.7337 without restraints) Performing minimization step: 3278. Total energy = 2857.3968 kcal/mol (2852.4917 without restraints) Performing minimization step: 3279. Total energy = 2857.1546 kcal/mol (2852.2496 without restraints) Performing minimization step: 3280. Total energy = 2856.9126 kcal/mol (2852.0075 without restraints) Performing minimization step: 3281. Total energy = 2856.6713 kcal/mol (2851.7663 without restraints) Performing minimization step: 3282. Total energy = 2856.4299 kcal/mol (2851.5248 without restraints) Performing minimization step: 3283. Total energy = 2856.1883 kcal/mol (2851.2833 without restraints) Performing minimization step: 3284. Total energy = 2855.9469 kcal/mol (2851.0419 without restraints) Performing minimization step: 3285. Total energy = 2855.7057 kcal/mol (2850.8008 without restraints) Performing minimization step: 3286. Total energy = 2855.4652 kcal/mol (2850.5603 without restraints) Performing minimization step: 3287. Total energy = 2855.2248 kcal/mol (2850.3199 without restraints) Performing minimization step: 3288. Total energy = 2854.9846 kcal/mol (2850.0797 without restraints) Performing minimization step: 3289. Total energy = 2854.7443 kcal/mol (2849.8396 without restraints) Performing minimization step: 3290. Total energy = 2854.5044 kcal/mol (2849.5996 without restraints) Performing minimization step: 3291. Total energy = 2854.2643 kcal/mol (2849.3596 without restraints) Performing minimization step: 3292. Total energy = 2854.0248 kcal/mol (2849.1200 without restraints) Performing minimization step: 3293. Total energy = 2853.7849 kcal/mol (2848.8801 without restraints) Performing minimization step: 3294. Total energy = 2853.5455 kcal/mol (2848.6407 without restraints) Performing minimization step: 3295. Total energy = 2853.3060 kcal/mol (2848.4013 without restraints) Performing minimization step: 3296. Total energy = 2853.0677 kcal/mol (2848.1629 without restraints) Performing minimization step: 3297. Total energy = 2852.8288 kcal/mol (2847.9240 without restraints) Performing minimization step: 3298. Total energy = 2852.5900 kcal/mol (2847.6849 without restraints) Performing minimization step: 3299. Total energy = 2852.3509 kcal/mol (2847.4461 without restraints) Performing minimization step: 3300. Total energy = 2852.1124 kcal/mol (2847.2076 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 2851.8744 kcal/mol (2846.9696 without restraints) Performing minimization step: 3302. Total energy = 2851.6359 kcal/mol (2846.7311 without restraints) Performing minimization step: 3303. Total energy = 2851.3978 kcal/mol (2846.4930 without restraints) Performing minimization step: 3304. Total energy = 2851.1598 kcal/mol (2846.2550 without restraints) Performing minimization step: 3305. Total energy = 2850.9221 kcal/mol (2846.0173 without restraints) Performing minimization step: 3306. Total energy = 2850.6845 kcal/mol (2845.7797 without restraints) Performing minimization step: 3307. Total energy = 2850.4469 kcal/mol (2845.5418 without restraints) Performing minimization step: 3308. Total energy = 2850.2095 kcal/mol (2845.3047 without restraints) Performing minimization step: 3309. Total energy = 2849.9725 kcal/mol (2845.0676 without restraints) Performing minimization step: 3310. Total energy = 2849.7359 kcal/mol (2844.8310 without restraints) Performing minimization step: 3311. Total energy = 2849.4995 kcal/mol (2844.5946 without restraints) Performing minimization step: 3312. Total energy = 2849.2630 kcal/mol (2844.3581 without restraints) Performing minimization step: 3313. Total energy = 2849.0270 kcal/mol (2844.1219 without restraints) Performing minimization step: 3314. Total energy = 2848.7912 kcal/mol (2843.8863 without restraints) Performing minimization step: 3315. Total energy = 2848.5552 kcal/mol (2843.6502 without restraints) Performing minimization step: 3316. Total energy = 2848.3193 kcal/mol (2843.4142 without restraints) Performing minimization step: 3317. Total energy = 2848.0836 kcal/mol (2843.1783 without restraints) Performing minimization step: 3318. Total energy = 2847.8478 kcal/mol (2842.9426 without restraints) Performing minimization step: 3319. Total energy = 2847.6125 kcal/mol (2842.7073 without restraints) Performing minimization step: 3320. Total energy = 2847.3774 kcal/mol (2842.4721 without restraints) Performing minimization step: 3321. Total energy = 2847.1421 kcal/mol (2842.2368 without restraints) Performing minimization step: 3322. Total energy = 2846.9074 kcal/mol (2842.0022 without restraints) Performing minimization step: 3323. Total energy = 2846.6728 kcal/mol (2841.7674 without restraints) Performing minimization step: 3324. Total energy = 2846.4382 kcal/mol (2841.5327 without restraints) Performing minimization step: 3325. Total energy = 2846.2041 kcal/mol (2841.2986 without restraints) Performing minimization step: 3326. Total energy = 2845.9702 kcal/mol (2841.0646 without restraints) Performing minimization step: 3327. Total energy = 2845.7362 kcal/mol (2840.8306 without restraints) Performing minimization step: 3328. Total energy = 2845.5018 kcal/mol (2840.5961 without restraints) Performing minimization step: 3329. Total energy = 2845.2683 kcal/mol (2840.3627 without restraints) Performing minimization step: 3330. Total energy = 2845.0354 kcal/mol (2840.1296 without restraints) Performing minimization step: 3331. Total energy = 2844.8024 kcal/mol (2839.8966 without restraints) Performing minimization step: 3332. Total energy = 2844.5688 kcal/mol (2839.6628 without restraints) Performing minimization step: 3333. Total energy = 2844.3354 kcal/mol (2839.4295 without restraints) Performing minimization step: 3334. Total energy = 2844.1026 kcal/mol (2839.1964 without restraints) Performing minimization step: 3335. Total energy = 2843.8695 kcal/mol (2838.9634 without restraints) Performing minimization step: 3336. Total energy = 2843.6365 kcal/mol (2838.7303 without restraints) Performing minimization step: 3337. Total energy = 2843.4041 kcal/mol (2838.4978 without restraints) Performing minimization step: 3338. Total energy = 2843.1717 kcal/mol (2838.2654 without restraints) Performing minimization step: 3339. Total energy = 2842.9395 kcal/mol (2838.0331 without restraints) Performing minimization step: 3340. Total energy = 2842.7078 kcal/mol (2837.8015 without restraints) Performing minimization step: 3341. Total energy = 2842.4766 kcal/mol (2837.5703 without restraints) Performing minimization step: 3342. Total energy = 2842.2455 kcal/mol (2837.3389 without restraints) Performing minimization step: 3343. Total energy = 2842.0143 kcal/mol (2837.1076 without restraints) Performing minimization step: 3344. Total energy = 2841.7834 kcal/mol (2836.8762 without restraints) Performing minimization step: 3345. Total energy = 2841.5523 kcal/mol (2836.6449 without restraints) Performing minimization step: 3346. Total energy = 2841.3210 kcal/mol (2836.4141 without restraints) Performing minimization step: 3347. Total energy = 2841.0900 kcal/mol (2836.1829 without restraints) Performing minimization step: 3348. Total energy = 2840.8583 kcal/mol (2835.9511 without restraints) Performing minimization step: 3349. Total energy = 2840.6276 kcal/mol (2835.7203 without restraints) Performing minimization step: 3350. Total energy = 2840.3973 kcal/mol (2835.4900 without restraints) Performing minimization step: 3351. Total energy = 2840.1675 kcal/mol (2835.2600 without restraints) Performing minimization step: 3352. Total energy = 2839.9379 kcal/mol (2835.0303 without restraints) Performing minimization step: 3353. Total energy = 2839.7075 kcal/mol (2834.7999 without restraints) Performing minimization step: 3354. Total energy = 2839.4775 kcal/mol (2834.5698 without restraints) Performing minimization step: 3355. Total energy = 2839.2476 kcal/mol (2834.3398 without restraints) Performing minimization step: 3356. Total energy = 2839.0178 kcal/mol (2834.1097 without restraints) Performing minimization step: 3357. Total energy = 2838.7881 kcal/mol (2833.8801 without restraints) Performing minimization step: 3358. Total energy = 2838.5588 kcal/mol (2833.6506 without restraints) Performing minimization step: 3359. Total energy = 2838.3293 kcal/mol (2833.4210 without restraints) Performing minimization step: 3360. Total energy = 2838.1002 kcal/mol (2833.1919 without restraints) Performing minimization step: 3361. Total energy = 2837.8715 kcal/mol (2832.9630 without restraints) Performing minimization step: 3362. Total energy = 2837.6430 kcal/mol (2832.7344 without restraints) Performing minimization step: 3363. Total energy = 2837.4145 kcal/mol (2832.5058 without restraints) Performing minimization step: 3364. Total energy = 2837.1862 kcal/mol (2832.2774 without restraints) Performing minimization step: 3365. Total energy = 2836.9581 kcal/mol (2832.0494 without restraints) Performing minimization step: 3366. Total energy = 2836.7301 kcal/mol (2831.8210 without restraints) Performing minimization step: 3367. Total energy = 2836.5018 kcal/mol (2831.5926 without restraints) Performing minimization step: 3368. Total energy = 2836.2741 kcal/mol (2831.3647 without restraints) Performing minimization step: 3369. Total energy = 2836.0465 kcal/mol (2831.1372 without restraints) Performing minimization step: 3370. Total energy = 2835.8191 kcal/mol (2830.9095 without restraints) Performing minimization step: 3371. Total energy = 2835.5915 kcal/mol (2830.6819 without restraints) Performing minimization step: 3372. Total energy = 2835.3643 kcal/mol (2830.4545 without restraints) Performing minimization step: 3373. Total energy = 2835.1372 kcal/mol (2830.2273 without restraints) Performing minimization step: 3374. Total energy = 2834.9105 kcal/mol (2830.0003 without restraints) Performing minimization step: 3375. Total energy = 2834.6835 kcal/mol (2829.7733 without restraints) Performing minimization step: 3376. Total energy = 2834.4569 kcal/mol (2829.5465 without restraints) Performing minimization step: 3377. Total energy = 2834.2302 kcal/mol (2829.3196 without restraints) Performing minimization step: 3378. Total energy = 2834.0039 kcal/mol (2829.0932 without restraints) Performing minimization step: 3379. Total energy = 2833.7778 kcal/mol (2828.8670 without restraints) Performing minimization step: 3380. Total energy = 2833.5518 kcal/mol (2828.6408 without restraints) Performing minimization step: 3381. Total energy = 2833.3262 kcal/mol (2828.4151 without restraints) Performing minimization step: 3382. Total energy = 2833.1003 kcal/mol (2828.1890 without restraints) Performing minimization step: 3383. Total energy = 2832.8747 kcal/mol (2827.9632 without restraints) Performing minimization step: 3384. Total energy = 2832.6500 kcal/mol (2827.7385 without restraints) Performing minimization step: 3385. Total energy = 2832.4245 kcal/mol (2827.5128 without restraints) Performing minimization step: 3386. Total energy = 2832.1993 kcal/mol (2827.2874 without restraints) Performing minimization step: 3387. Total energy = 2831.9743 kcal/mol (2827.0623 without restraints) Performing minimization step: 3388. Total energy = 2831.7491 kcal/mol (2826.8368 without restraints) Performing minimization step: 3389. Total energy = 2831.5238 kcal/mol (2826.6114 without restraints) Performing minimization step: 3390. Total energy = 2831.2990 kcal/mol (2826.3865 without restraints) Performing minimization step: 3391. Total energy = 2831.0744 kcal/mol (2826.1618 without restraints) Performing minimization step: 3392. Total energy = 2830.8504 kcal/mol (2825.9379 without restraints) Performing minimization step: 3393. Total energy = 2830.6263 kcal/mol (2825.7133 without restraints) Performing minimization step: 3394. Total energy = 2830.4017 kcal/mol (2825.4885 without restraints) Performing minimization step: 3395. Total energy = 2830.1779 kcal/mol (2825.2647 without restraints) Performing minimization step: 3396. Total energy = 2829.9541 kcal/mol (2825.0406 without restraints) Performing minimization step: 3397. Total energy = 2829.7306 kcal/mol (2824.8169 without restraints) Performing minimization step: 3398. Total energy = 2829.5068 kcal/mol (2824.5930 without restraints) Performing minimization step: 3399. Total energy = 2829.2835 kcal/mol (2824.3695 without restraints) Performing minimization step: 3400. Total energy = 2829.0598 kcal/mol (2824.1456 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 2828.8372 kcal/mol (2823.9230 without restraints) Performing minimization step: 3402. Total energy = 2828.6145 kcal/mol (2823.7000 without restraints) Performing minimization step: 3403. Total energy = 2828.3918 kcal/mol (2823.4771 without restraints) Performing minimization step: 3404. Total energy = 2828.1690 kcal/mol (2823.2541 without restraints) Performing minimization step: 3405. Total energy = 2827.9465 kcal/mol (2823.0317 without restraints) Performing minimization step: 3406. Total energy = 2827.7245 kcal/mol (2822.8094 without restraints) Performing minimization step: 3407. Total energy = 2827.5023 kcal/mol (2822.5869 without restraints) Performing minimization step: 3408. Total energy = 2827.2804 kcal/mol (2822.3648 without restraints) Performing minimization step: 3409. Total energy = 2827.0588 kcal/mol (2822.1430 without restraints) Performing minimization step: 3410. Total energy = 2826.8370 kcal/mol (2821.9210 without restraints) Performing minimization step: 3411. Total energy = 2826.6152 kcal/mol (2821.6990 without restraints) Performing minimization step: 3412. Total energy = 2826.3935 kcal/mol (2821.4771 without restraints) Performing minimization step: 3413. Total energy = 2826.1719 kcal/mol (2821.2553 without restraints) Performing minimization step: 3414. Total energy = 2825.9505 kcal/mol (2821.0338 without restraints) Performing minimization step: 3415. Total energy = 2825.7291 kcal/mol (2820.8121 without restraints) Performing minimization step: 3416. Total energy = 2825.5077 kcal/mol (2820.5904 without restraints) Performing minimization step: 3417. Total energy = 2825.2873 kcal/mol (2820.3699 without restraints) Performing minimization step: 3418. Total energy = 2825.0664 kcal/mol (2820.1488 without restraints) Performing minimization step: 3419. Total energy = 2824.8459 kcal/mol (2819.9281 without restraints) Performing minimization step: 3420. Total energy = 2824.6252 kcal/mol (2819.7072 without restraints) Performing minimization step: 3421. Total energy = 2824.4048 kcal/mol (2819.4866 without restraints) Performing minimization step: 3422. Total energy = 2824.1848 kcal/mol (2819.2663 without restraints) Performing minimization step: 3423. Total energy = 2823.9648 kcal/mol (2819.0462 without restraints) Performing minimization step: 3424. Total energy = 2823.7452 kcal/mol (2818.8264 without restraints) Performing minimization step: 3425. Total energy = 2823.5252 kcal/mol (2818.6061 without restraints) Performing minimization step: 3426. Total energy = 2823.3053 kcal/mol (2818.3861 without restraints) Performing minimization step: 3427. Total energy = 2823.0858 kcal/mol (2818.1663 without restraints) Performing minimization step: 3428. Total energy = 2822.8663 kcal/mol (2817.9466 without restraints) Performing minimization step: 3429. Total energy = 2822.6473 kcal/mol (2817.7277 without restraints) Performing minimization step: 3430. Total energy = 2822.4282 kcal/mol (2817.5080 without restraints) Performing minimization step: 3431. Total energy = 2822.2090 kcal/mol (2817.2886 without restraints) Performing minimization step: 3432. Total energy = 2821.9898 kcal/mol (2817.0692 without restraints) Performing minimization step: 3433. Total energy = 2821.7705 kcal/mol (2816.8497 without restraints) Performing minimization step: 3434. Total energy = 2821.5517 kcal/mol (2816.6307 without restraints) Performing minimization step: 3435. Total energy = 2821.3327 kcal/mol (2816.4113 without restraints) Performing minimization step: 3436. Total energy = 2821.1144 kcal/mol (2816.1929 without restraints) Performing minimization step: 3437. Total energy = 2820.8958 kcal/mol (2815.9741 without restraints) Performing minimization step: 3438. Total energy = 2820.6775 kcal/mol (2815.7556 without restraints) Performing minimization step: 3439. Total energy = 2820.4595 kcal/mol (2815.5373 without restraints) Performing minimization step: 3440. Total energy = 2820.2414 kcal/mol (2815.3192 without restraints) Performing minimization step: 3441. Total energy = 2820.0234 kcal/mol (2815.1006 without restraints) Performing minimization step: 3442. Total energy = 2819.8053 kcal/mol (2814.8825 without restraints) Performing minimization step: 3443. Total energy = 2819.5875 kcal/mol (2814.6644 without restraints) Performing minimization step: 3444. Total energy = 2819.3698 kcal/mol (2814.4465 without restraints) Performing minimization step: 3445. Total energy = 2819.1524 kcal/mol (2814.2288 without restraints) Performing minimization step: 3446. Total energy = 2818.9361 kcal/mol (2814.0123 without restraints) Performing minimization step: 3447. Total energy = 2818.7195 kcal/mol (2813.7954 without restraints) Performing minimization step: 3448. Total energy = 2818.5027 kcal/mol (2813.5785 without restraints) Performing minimization step: 3449. Total energy = 2818.2862 kcal/mol (2813.3612 without restraints) Performing minimization step: 3450. Total energy = 2818.0719 kcal/mol (2813.1444 without restraints) Performing minimization step: 3451. Total energy = 2817.8525 kcal/mol (2812.9274 without restraints) Performing minimization step: 3452. Total energy = 2817.6360 kcal/mol (2812.7107 without restraints) Performing minimization step: 3453. Total energy = 2817.4197 kcal/mol (2812.4942 without restraints) Performing minimization step: 3454. Total energy = 2817.2037 kcal/mol (2812.2779 without restraints) Performing minimization step: 3455. Total energy = 2816.9875 kcal/mol (2812.0614 without restraints) Performing minimization step: 3456. Total energy = 2816.7713 kcal/mol (2811.8450 without restraints) Performing minimization step: 3457. Total energy = 2816.5555 kcal/mol (2811.6290 without restraints) Performing minimization step: 3458. Total energy = 2816.3401 kcal/mol (2811.4132 without restraints) Performing minimization step: 3459. Total energy = 2816.1248 kcal/mol (2811.1978 without restraints) Performing minimization step: 3460. Total energy = 2815.9096 kcal/mol (2810.9823 without restraints) Performing minimization step: 3461. Total energy = 2815.6939 kcal/mol (2810.7664 without restraints) Performing minimization step: 3462. Total energy = 2815.4786 kcal/mol (2810.5507 without restraints) Performing minimization step: 3463. Total energy = 2815.2637 kcal/mol (2810.3356 without restraints) Performing minimization step: 3464. Total energy = 2815.0482 kcal/mol (2810.1199 without restraints) Performing minimization step: 3465. Total energy = 2814.8332 kcal/mol (2809.9046 without restraints) Performing minimization step: 3466. Total energy = 2814.6185 kcal/mol (2809.6895 without restraints) Performing minimization step: 3467. Total energy = 2814.4039 kcal/mol (2809.4747 without restraints) Performing minimization step: 3468. Total energy = 2814.1886 kcal/mol (2809.2591 without restraints) Performing minimization step: 3469. Total energy = 2813.9743 kcal/mol (2809.0446 without restraints) Performing minimization step: 3470. Total energy = 2813.7594 kcal/mol (2808.8294 without restraints) Performing minimization step: 3471. Total energy = 2813.5455 kcal/mol (2808.6152 without restraints) Performing minimization step: 3472. Total energy = 2813.3323 kcal/mol (2808.4018 without restraints) Performing minimization step: 3473. Total energy = 2813.1182 kcal/mol (2808.1874 without restraints) Performing minimization step: 3474. Total energy = 2812.9042 kcal/mol (2807.9731 without restraints) Performing minimization step: 3475. Total energy = 2812.6904 kcal/mol (2807.7590 without restraints) Performing minimization step: 3476. Total energy = 2812.4766 kcal/mol (2807.5449 without restraints) Performing minimization step: 3477. Total energy = 2812.2632 kcal/mol (2807.3314 without restraints) Performing minimization step: 3478. Total energy = 2812.0503 kcal/mol (2807.1180 without restraints) Performing minimization step: 3479. Total energy = 2811.8366 kcal/mol (2806.9041 without restraints) Performing minimization step: 3480. Total energy = 2811.6236 kcal/mol (2806.6908 without restraints) Performing minimization step: 3481. Total energy = 2811.4103 kcal/mol (2806.4773 without restraints) Performing minimization step: 3482. Total energy = 2811.1979 kcal/mol (2806.2646 without restraints) Performing minimization step: 3483. Total energy = 2810.9848 kcal/mol (2806.0511 without restraints) Performing minimization step: 3484. Total energy = 2810.7725 kcal/mol (2805.8388 without restraints) Performing minimization step: 3485. Total energy = 2810.5599 kcal/mol (2805.6257 without restraints) Performing minimization step: 3486. Total energy = 2810.3473 kcal/mol (2805.4128 without restraints) Performing minimization step: 3487. Total energy = 2810.1346 kcal/mol (2805.1998 without restraints) Performing minimization step: 3488. Total energy = 2809.9225 kcal/mol (2804.9874 without restraints) Performing minimization step: 3489. Total energy = 2809.7101 kcal/mol (2804.7747 without restraints) Performing minimization step: 3490. Total energy = 2809.4983 kcal/mol (2804.5626 without restraints) Performing minimization step: 3491. Total energy = 2809.2864 kcal/mol (2804.3505 without restraints) Performing minimization step: 3492. Total energy = 2809.0744 kcal/mol (2804.1381 without restraints) Performing minimization step: 3493. Total energy = 2808.8630 kcal/mol (2803.9265 without restraints) Performing minimization step: 3494. Total energy = 2808.6514 kcal/mol (2803.7145 without restraints) Performing minimization step: 3495. Total energy = 2808.4398 kcal/mol (2803.5027 without restraints) Performing minimization step: 3496. Total energy = 2808.2287 kcal/mol (2803.2913 without restraints) Performing minimization step: 3497. Total energy = 2808.0176 kcal/mol (2803.0798 without restraints) Performing minimization step: 3498. Total energy = 2807.8068 kcal/mol (2802.8688 without restraints) Performing minimization step: 3499. Total energy = 2807.5957 kcal/mol (2802.6573 without restraints) Performing minimization step: 3500. Total energy = 2807.3844 kcal/mol (2802.4457 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 2807.1736 kcal/mol (2802.2345 without restraints) Performing minimization step: 3502. Total energy = 2806.9630 kcal/mol (2802.0236 without restraints) Performing minimization step: 3503. Total energy = 2806.7526 kcal/mol (2801.8130 without restraints) Performing minimization step: 3504. Total energy = 2806.5422 kcal/mol (2801.6022 without restraints) Performing minimization step: 3505. Total energy = 2806.3319 kcal/mol (2801.3916 without restraints) Performing minimization step: 3506. Total energy = 2806.1216 kcal/mol (2801.1809 without restraints) Performing minimization step: 3507. Total energy = 2805.9122 kcal/mol (2800.9713 without restraints) Performing minimization step: 3508. Total energy = 2805.7023 kcal/mol (2800.7611 without restraints) Performing minimization step: 3509. Total energy = 2805.4925 kcal/mol (2800.5509 without restraints) Performing minimization step: 3510. Total energy = 2805.2826 kcal/mol (2800.3407 without restraints) Performing minimization step: 3511. Total energy = 2805.0729 kcal/mol (2800.1306 without restraints) Performing minimization step: 3512. Total energy = 2804.8634 kcal/mol (2799.9210 without restraints) Performing minimization step: 3513. Total energy = 2804.6540 kcal/mol (2799.7113 without restraints) Performing minimization step: 3514. Total energy = 2804.4446 kcal/mol (2799.5014 without restraints) Performing minimization step: 3515. Total energy = 2804.2351 kcal/mol (2799.2917 without restraints) Performing minimization step: 3516. Total energy = 2804.0260 kcal/mol (2799.0822 without restraints) Performing minimization step: 3517. Total energy = 2803.8172 kcal/mol (2798.8730 without restraints) Performing minimization step: 3518. Total energy = 2803.6079 kcal/mol (2798.6634 without restraints) Performing minimization step: 3519. Total energy = 2803.3990 kcal/mol (2798.4542 without restraints) Performing minimization step: 3520. Total energy = 2803.1903 kcal/mol (2798.2452 without restraints) Performing minimization step: 3521. Total energy = 2802.9816 kcal/mol (2798.0360 without restraints) Performing minimization step: 3522. Total energy = 2802.7729 kcal/mol (2797.8271 without restraints) Performing minimization step: 3523. Total energy = 2802.5643 kcal/mol (2797.6182 without restraints) Performing minimization step: 3524. Total energy = 2802.3559 kcal/mol (2797.4093 without restraints) Performing minimization step: 3525. Total energy = 2802.1476 kcal/mol (2797.2008 without restraints) Performing minimization step: 3526. Total energy = 2801.9395 kcal/mol (2796.9923 without restraints) Performing minimization step: 3527. Total energy = 2801.7313 kcal/mol (2796.7838 without restraints) Performing minimization step: 3528. Total energy = 2801.5233 kcal/mol (2796.5755 without restraints) Performing minimization step: 3529. Total energy = 2801.3157 kcal/mol (2796.3675 without restraints) Performing minimization step: 3530. Total energy = 2801.1080 kcal/mol (2796.1595 without restraints) Performing minimization step: 3531. Total energy = 2800.9007 kcal/mol (2795.9522 without restraints) Performing minimization step: 3532. Total energy = 2800.6934 kcal/mol (2795.7442 without restraints) Performing minimization step: 3533. Total energy = 2800.4859 kcal/mol (2795.5365 without restraints) Performing minimization step: 3534. Total energy = 2800.2789 kcal/mol (2795.3291 without restraints) Performing minimization step: 3535. Total energy = 2800.0711 kcal/mol (2795.1207 without restraints) Performing minimization step: 3536. Total energy = 2799.8637 kcal/mol (2794.9131 without restraints) Performing minimization step: 3537. Total energy = 2799.6568 kcal/mol (2794.7057 without restraints) Performing minimization step: 3538. Total energy = 2799.4492 kcal/mol (2794.4979 without restraints) Performing minimization step: 3539. Total energy = 2799.2422 kcal/mol (2794.2906 without restraints) Performing minimization step: 3540. Total energy = 2799.0354 kcal/mol (2794.0834 without restraints) Performing minimization step: 3541. Total energy = 2798.8289 kcal/mol (2793.8765 without restraints) Performing minimization step: 3542. Total energy = 2798.6222 kcal/mol (2793.6696 without restraints) Performing minimization step: 3543. Total energy = 2798.4157 kcal/mol (2793.4627 without restraints) Performing minimization step: 3544. Total energy = 2798.2093 kcal/mol (2793.2559 without restraints) Performing minimization step: 3545. Total energy = 2798.0033 kcal/mol (2793.0496 without restraints) Performing minimization step: 3546. Total energy = 2797.7971 kcal/mol (2792.8430 without restraints) Performing minimization step: 3547. Total energy = 2797.5911 kcal/mol (2792.6367 without restraints) Performing minimization step: 3548. Total energy = 2797.3851 kcal/mol (2792.4303 without restraints) Performing minimization step: 3549. Total energy = 2797.1795 kcal/mol (2792.2244 without restraints) Performing minimization step: 3550. Total energy = 2796.9740 kcal/mol (2792.0185 without restraints) Performing minimization step: 3551. Total energy = 2796.7686 kcal/mol (2791.8127 without restraints) Performing minimization step: 3552. Total energy = 2796.5640 kcal/mol (2791.6077 without restraints) Performing minimization step: 3553. Total energy = 2796.3584 kcal/mol (2791.4018 without restraints) Performing minimization step: 3554. Total energy = 2796.1531 kcal/mol (2791.1962 without restraints) Performing minimization step: 3555. Total energy = 2795.9480 kcal/mol (2790.9908 without restraints) Performing minimization step: 3556. Total energy = 2795.7429 kcal/mol (2790.7852 without restraints) Performing minimization step: 3557. Total energy = 2795.5379 kcal/mol (2790.5798 without restraints) Performing minimization step: 3558. Total energy = 2795.3329 kcal/mol (2790.3745 without restraints) Performing minimization step: 3559. Total energy = 2795.1283 kcal/mol (2790.1695 without restraints) Performing minimization step: 3560. Total energy = 2794.9233 kcal/mol (2789.9641 without restraints) Performing minimization step: 3561. Total energy = 2794.7184 kcal/mol (2789.7588 without restraints) Performing minimization step: 3562. Total energy = 2794.5133 kcal/mol (2789.5534 without restraints) Performing minimization step: 3563. Total energy = 2794.3090 kcal/mol (2789.3488 without restraints) Performing minimization step: 3564. Total energy = 2794.1051 kcal/mol (2789.1444 without restraints) Performing minimization step: 3565. Total energy = 2793.9010 kcal/mol (2788.9399 without restraints) Performing minimization step: 3566. Total energy = 2793.6968 kcal/mol (2788.7354 without restraints) Performing minimization step: 3567. Total energy = 2793.4932 kcal/mol (2788.5316 without restraints) Performing minimization step: 3568. Total energy = 2793.2894 kcal/mol (2788.3271 without restraints) Performing minimization step: 3569. Total energy = 2793.0851 kcal/mol (2788.1226 without restraints) Performing minimization step: 3570. Total energy = 2792.8814 kcal/mol (2787.9185 without restraints) Performing minimization step: 3571. Total energy = 2792.6776 kcal/mol (2787.7143 without restraints) Performing minimization step: 3572. Total energy = 2792.4735 kcal/mol (2787.5098 without restraints) Performing minimization step: 3573. Total energy = 2792.2700 kcal/mol (2787.3060 without restraints) Performing minimization step: 3574. Total energy = 2792.0670 kcal/mol (2787.1025 without restraints) Performing minimization step: 3575. Total energy = 2791.8637 kcal/mol (2786.8989 without restraints) Performing minimization step: 3576. Total energy = 2791.6604 kcal/mol (2786.6952 without restraints) Performing minimization step: 3577. Total energy = 2791.4568 kcal/mol (2786.4911 without restraints) Performing minimization step: 3578. Total energy = 2791.2539 kcal/mol (2786.2880 without restraints) Performing minimization step: 3579. Total energy = 2791.0514 kcal/mol (2786.0849 without restraints) Performing minimization step: 3580. Total energy = 2790.8484 kcal/mol (2785.8816 without restraints) Performing minimization step: 3581. Total energy = 2790.6458 kcal/mol (2785.6786 without restraints) Performing minimization step: 3582. Total energy = 2790.4433 kcal/mol (2785.4759 without restraints) Performing minimization step: 3583. Total energy = 2790.2412 kcal/mol (2785.2732 without restraints) Performing minimization step: 3584. Total energy = 2790.0383 kcal/mol (2785.0699 without restraints) Performing minimization step: 3585. Total energy = 2789.8362 kcal/mol (2784.8674 without restraints) Performing minimization step: 3586. Total energy = 2789.6336 kcal/mol (2784.6642 without restraints) Performing minimization step: 3587. Total energy = 2789.4313 kcal/mol (2784.4618 without restraints) Performing minimization step: 3588. Total energy = 2789.2293 kcal/mol (2784.2593 without restraints) Performing minimization step: 3589. Total energy = 2789.0272 kcal/mol (2784.0569 without restraints) Performing minimization step: 3590. Total energy = 2788.8257 kcal/mol (2783.8549 without restraints) Performing minimization step: 3591. Total energy = 2788.6239 kcal/mol (2783.6527 without restraints) Performing minimization step: 3592. Total energy = 2788.4220 kcal/mol (2783.4505 without restraints) Performing minimization step: 3593. Total energy = 2788.2206 kcal/mol (2783.2486 without restraints) Performing minimization step: 3594. Total energy = 2788.0191 kcal/mol (2783.0467 without restraints) Performing minimization step: 3595. Total energy = 2787.8176 kcal/mol (2782.8449 without restraints) Performing minimization step: 3596. Total energy = 2787.6163 kcal/mol (2782.6431 without restraints) Performing minimization step: 3597. Total energy = 2787.4148 kcal/mol (2782.4413 without restraints) Performing minimization step: 3598. Total energy = 2787.2137 kcal/mol (2782.2397 without restraints) Performing minimization step: 3599. Total energy = 2787.0125 kcal/mol (2782.0381 without restraints) Performing minimization step: 3600. Total energy = 2786.8117 kcal/mol (2781.8370 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 2786.6106 kcal/mol (2781.6354 without restraints) Performing minimization step: 3602. Total energy = 2786.4095 kcal/mol (2781.4339 without restraints) Performing minimization step: 3603. Total energy = 2786.2092 kcal/mol (2781.2332 without restraints) Performing minimization step: 3604. Total energy = 2786.0084 kcal/mol (2781.0320 without restraints) Performing minimization step: 3605. Total energy = 2785.8077 kcal/mol (2780.8310 without restraints) Performing minimization step: 3606. Total energy = 2785.6072 kcal/mol (2780.6300 without restraints) Performing minimization step: 3607. Total energy = 2785.4067 kcal/mol (2780.4292 without restraints) Performing minimization step: 3608. Total energy = 2785.2066 kcal/mol (2780.2285 without restraints) Performing minimization step: 3609. Total energy = 2785.0061 kcal/mol (2780.0276 without restraints) Performing minimization step: 3610. Total energy = 2784.8060 kcal/mol (2779.8271 without restraints) Performing minimization step: 3611. Total energy = 2784.6058 kcal/mol (2779.6265 without restraints) Performing minimization step: 3612. Total energy = 2784.4059 kcal/mol (2779.4261 without restraints) Performing minimization step: 3613. Total energy = 2784.2060 kcal/mol (2779.2259 without restraints) Performing minimization step: 3614. Total energy = 2784.0060 kcal/mol (2779.0255 without restraints) Performing minimization step: 3615. Total energy = 2783.8062 kcal/mol (2778.8253 without restraints) Performing minimization step: 3616. Total energy = 2783.6062 kcal/mol (2778.6249 without restraints) Performing minimization step: 3617. Total energy = 2783.4068 kcal/mol (2778.4250 without restraints) Performing minimization step: 3618. Total energy = 2783.2079 kcal/mol (2778.2258 without restraints) Performing minimization step: 3619. Total energy = 2783.0086 kcal/mol (2778.0260 without restraints) Performing minimization step: 3620. Total energy = 2782.8093 kcal/mol (2777.8263 without restraints) Performing minimization step: 3621. Total energy = 2782.6099 kcal/mol (2777.6264 without restraints) Performing minimization step: 3622. Total energy = 2782.4106 kcal/mol (2777.4268 without restraints) Performing minimization step: 3623. Total energy = 2782.2112 kcal/mol (2777.2269 without restraints) Performing minimization step: 3624. Total energy = 2782.0121 kcal/mol (2777.0274 without restraints) Performing minimization step: 3625. Total energy = 2781.8133 kcal/mol (2776.8281 without restraints) Performing minimization step: 3626. Total energy = 2781.6142 kcal/mol (2776.6286 without restraints) Performing minimization step: 3627. Total energy = 2781.4150 kcal/mol (2776.4290 without restraints) Performing minimization step: 3628. Total energy = 2781.2163 kcal/mol (2776.2298 without restraints) Performing minimization step: 3629. Total energy = 2781.0176 kcal/mol (2776.0307 without restraints) Performing minimization step: 3630. Total energy = 2780.8188 kcal/mol (2775.8315 without restraints) Performing minimization step: 3631. Total energy = 2780.6205 kcal/mol (2775.6328 without restraints) Performing minimization step: 3632. Total energy = 2780.4220 kcal/mol (2775.4339 without restraints) Performing minimization step: 3633. Total energy = 2780.2238 kcal/mol (2775.2351 without restraints) Performing minimization step: 3634. Total energy = 2780.0255 kcal/mol (2775.0367 without restraints) Performing minimization step: 3635. Total energy = 2779.8272 kcal/mol (2774.8378 without restraints) Performing minimization step: 3636. Total energy = 2779.6290 kcal/mol (2774.6391 without restraints) Performing minimization step: 3637. Total energy = 2779.4310 kcal/mol (2774.4407 without restraints) Performing minimization step: 3638. Total energy = 2779.2333 kcal/mol (2774.2426 without restraints) Performing minimization step: 3639. Total energy = 2779.0350 kcal/mol (2774.0438 without restraints) Performing minimization step: 3640. Total energy = 2778.8379 kcal/mol (2773.8462 without restraints) Performing minimization step: 3641. Total energy = 2778.6399 kcal/mol (2773.6479 without restraints) Performing minimization step: 3642. Total energy = 2778.4425 kcal/mol (2773.4500 without restraints) Performing minimization step: 3643. Total energy = 2778.2452 kcal/mol (2773.2523 without restraints) Performing minimization step: 3644. Total energy = 2778.0473 kcal/mol (2773.0539 without restraints) Performing minimization step: 3645. Total energy = 2777.8496 kcal/mol (2772.8558 without restraints) Performing minimization step: 3646. Total energy = 2777.6521 kcal/mol (2772.6578 without restraints) Performing minimization step: 3647. Total energy = 2777.4548 kcal/mol (2772.4601 without restraints) Performing minimization step: 3648. Total energy = 2777.2575 kcal/mol (2772.2625 without restraints) Performing minimization step: 3649. Total energy = 2777.0605 kcal/mol (2772.0649 without restraints) Performing minimization step: 3650. Total energy = 2776.8634 kcal/mol (2771.8673 without restraints) Performing minimization step: 3651. Total energy = 2776.6662 kcal/mol (2771.6697 without restraints) Performing minimization step: 3652. Total energy = 2776.4697 kcal/mol (2771.4727 without restraints) Performing minimization step: 3653. Total energy = 2776.2726 kcal/mol (2771.2752 without restraints) Performing minimization step: 3654. Total energy = 2776.0754 kcal/mol (2771.0775 without restraints) Performing minimization step: 3655. Total energy = 2775.8787 kcal/mol (2770.8804 without restraints) Performing minimization step: 3656. Total energy = 2775.6827 kcal/mol (2770.6840 without restraints) Performing minimization step: 3657. Total energy = 2775.4858 kcal/mol (2770.4865 without restraints) Performing minimization step: 3658. Total energy = 2775.2889 kcal/mol (2770.2893 without restraints) Performing minimization step: 3659. Total energy = 2775.0923 kcal/mol (2770.0923 without restraints) Performing minimization step: 3660. Total energy = 2774.8962 kcal/mol (2769.8957 without restraints) Performing minimization step: 3661. Total energy = 2774.6997 kcal/mol (2769.6987 without restraints) Performing minimization step: 3662. Total energy = 2774.5030 kcal/mol (2769.5016 without restraints) Performing minimization step: 3663. Total energy = 2774.3068 kcal/mol (2769.3050 without restraints) Performing minimization step: 3664. Total energy = 2774.1105 kcal/mol (2769.1080 without restraints) Performing minimization step: 3665. Total energy = 2773.9141 kcal/mol (2768.9113 without restraints) Performing minimization step: 3666. Total energy = 2773.7178 kcal/mol (2768.7146 without restraints) Performing minimization step: 3667. Total energy = 2773.5217 kcal/mol (2768.5181 without restraints) Performing minimization step: 3668. Total energy = 2773.3256 kcal/mol (2768.3215 without restraints) Performing minimization step: 3669. Total energy = 2773.1299 kcal/mol (2768.1253 without restraints) Performing minimization step: 3670. Total energy = 2772.9339 kcal/mol (2767.9289 without restraints) Performing minimization step: 3671. Total energy = 2772.7386 kcal/mol (2767.7331 without restraints) Performing minimization step: 3672. Total energy = 2772.5433 kcal/mol (2767.5374 without restraints) Performing minimization step: 3673. Total energy = 2772.3482 kcal/mol (2767.3418 without restraints) Performing minimization step: 3674. Total energy = 2772.1527 kcal/mol (2767.1459 without restraints) Performing minimization step: 3675. Total energy = 2771.9574 kcal/mol (2766.9501 without restraints) Performing minimization step: 3676. Total energy = 2771.7620 kcal/mol (2766.7543 without restraints) Performing minimization step: 3677. Total energy = 2771.5664 kcal/mol (2766.5582 without restraints) Performing minimization step: 3678. Total energy = 2771.3712 kcal/mol (2766.3624 without restraints) Performing minimization step: 3679. Total energy = 2771.1760 kcal/mol (2766.1669 without restraints) Performing minimization step: 3680. Total energy = 2770.9804 kcal/mol (2765.9708 without restraints) Performing minimization step: 3681. Total energy = 2770.7852 kcal/mol (2765.7752 without restraints) Performing minimization step: 3682. Total energy = 2770.5905 kcal/mol (2765.5798 without restraints) Performing minimization step: 3683. Total energy = 2770.3949 kcal/mol (2765.3839 without restraints) Performing minimization step: 3684. Total energy = 2770.1997 kcal/mol (2765.1883 without restraints) Performing minimization step: 3685. Total energy = 2770.0046 kcal/mol (2764.9926 without restraints) Performing minimization step: 3686. Total energy = 2769.8095 kcal/mol (2764.7971 without restraints) Performing minimization step: 3687. Total energy = 2769.6147 kcal/mol (2764.6018 without restraints) Performing minimization step: 3688. Total energy = 2769.4201 kcal/mol (2764.4068 without restraints) Performing minimization step: 3689. Total energy = 2769.2252 kcal/mol (2764.2114 without restraints) Performing minimization step: 3690. Total energy = 2769.0303 kcal/mol (2764.0159 without restraints) Performing minimization step: 3691. Total energy = 2768.8362 kcal/mol (2763.8216 without restraints) Performing minimization step: 3692. Total energy = 2768.6417 kcal/mol (2763.6265 without restraints) Performing minimization step: 3693. Total energy = 2768.4468 kcal/mol (2763.4309 without restraints) Performing minimization step: 3694. Total energy = 2768.2525 kcal/mol (2763.2363 without restraints) Performing minimization step: 3695. Total energy = 2768.0578 kcal/mol (2763.0412 without restraints) Performing minimization step: 3696. Total energy = 2767.8631 kcal/mol (2762.8462 without restraints) Performing minimization step: 3697. Total energy = 2767.6689 kcal/mol (2762.6514 without restraints) Performing minimization step: 3698. Total energy = 2767.4747 kcal/mol (2762.4567 without restraints) Performing minimization step: 3699. Total energy = 2767.2804 kcal/mol (2762.2620 without restraints) Performing minimization step: 3700. Total energy = 2767.0863 kcal/mol (2762.0673 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 2766.8919 kcal/mol (2761.8725 without restraints) Performing minimization step: 3702. Total energy = 2766.6976 kcal/mol (2761.6777 without restraints) Performing minimization step: 3703. Total energy = 2766.5032 kcal/mol (2761.4829 without restraints) Performing minimization step: 3704. Total energy = 2766.3093 kcal/mol (2761.2886 without restraints) Performing minimization step: 3705. Total energy = 2766.1158 kcal/mol (2761.0946 without restraints) Performing minimization step: 3706. Total energy = 2765.9218 kcal/mol (2760.9001 without restraints) Performing minimization step: 3707. Total energy = 2765.7279 kcal/mol (2760.7056 without restraints) Performing minimization step: 3708. Total energy = 2765.5340 kcal/mol (2760.5114 without restraints) Performing minimization step: 3709. Total energy = 2765.3408 kcal/mol (2760.3176 without restraints) Performing minimization step: 3710. Total energy = 2765.1468 kcal/mol (2760.1231 without restraints) Performing minimization step: 3711. Total energy = 2764.9530 kcal/mol (2759.9288 without restraints) Performing minimization step: 3712. Total energy = 2764.7591 kcal/mol (2759.7345 without restraints) Performing minimization step: 3713. Total energy = 2764.5654 kcal/mol (2759.5403 without restraints) Performing minimization step: 3714. Total energy = 2764.3715 kcal/mol (2759.3459 without restraints) Performing minimization step: 3715. Total energy = 2764.1778 kcal/mol (2759.1517 without restraints) Performing minimization step: 3716. Total energy = 2763.9834 kcal/mol (2758.9568 without restraints) Performing minimization step: 3717. Total energy = 2763.7900 kcal/mol (2758.7629 without restraints) Performing minimization step: 3718. Total energy = 2763.5963 kcal/mol (2758.5688 without restraints) Performing minimization step: 3719. Total energy = 2763.4030 kcal/mol (2758.3750 without restraints) Performing minimization step: 3720. Total energy = 2763.2091 kcal/mol (2758.1807 without restraints) Performing minimization step: 3721. Total energy = 2763.0156 kcal/mol (2757.9867 without restraints) Performing minimization step: 3722. Total energy = 2762.8222 kcal/mol (2757.7928 without restraints) Performing minimization step: 3723. Total energy = 2762.6285 kcal/mol (2757.5986 without restraints) Performing minimization step: 3724. Total energy = 2762.4349 kcal/mol (2757.4044 without restraints) Performing minimization step: 3725. Total energy = 2762.2416 kcal/mol (2757.2107 without restraints) Performing minimization step: 3726. Total energy = 2762.0483 kcal/mol (2757.0169 without restraints) Performing minimization step: 3727. Total energy = 2761.8553 kcal/mol (2756.8234 without restraints) Performing minimization step: 3728. Total energy = 2761.6624 kcal/mol (2756.6301 without restraints) Performing minimization step: 3729. Total energy = 2761.4688 kcal/mol (2756.4360 without restraints) Performing minimization step: 3730. Total energy = 2761.2756 kcal/mol (2756.2423 without restraints) Performing minimization step: 3731. Total energy = 2761.0823 kcal/mol (2756.0484 without restraints) Performing minimization step: 3732. Total energy = 2760.8884 kcal/mol (2755.8541 without restraints) Performing minimization step: 3733. Total energy = 2760.6953 kcal/mol (2755.6605 without restraints) Performing minimization step: 3734. Total energy = 2760.5021 kcal/mol (2755.4670 without restraints) Performing minimization step: 3735. Total energy = 2760.3090 kcal/mol (2755.2733 without restraints) Performing minimization step: 3736. Total energy = 2760.1158 kcal/mol (2755.0795 without restraints) Performing minimization step: 3737. Total energy = 2759.9221 kcal/mol (2754.8854 without restraints) Performing minimization step: 3738. Total energy = 2759.7291 kcal/mol (2754.6919 without restraints) Performing minimization step: 3739. Total energy = 2759.5360 kcal/mol (2754.4983 without restraints) Performing minimization step: 3740. Total energy = 2759.3428 kcal/mol (2754.3046 without restraints) Performing minimization step: 3741. Total energy = 2759.1499 kcal/mol (2754.1112 without restraints) Performing minimization step: 3742. Total energy = 2758.9568 kcal/mol (2753.9176 without restraints) Performing minimization step: 3743. Total energy = 2758.7641 kcal/mol (2753.7246 without restraints) Performing minimization step: 3744. Total energy = 2758.5715 kcal/mol (2753.5313 without restraints) Performing minimization step: 3745. Total energy = 2758.3784 kcal/mol (2753.3378 without restraints) Performing minimization step: 3746. Total energy = 2758.1852 kcal/mol (2753.1439 without restraints) Performing minimization step: 3747. Total energy = 2757.9920 kcal/mol (2752.9503 without restraints) Performing minimization step: 3748. Total energy = 2757.7986 kcal/mol (2752.7564 without restraints) Performing minimization step: 3749. Total energy = 2757.6059 kcal/mol (2752.5633 without restraints) Performing minimization step: 3750. Total energy = 2757.4131 kcal/mol (2752.3699 without restraints) Performing minimization step: 3751. Total energy = 2757.2205 kcal/mol (2752.1770 without restraints) Performing minimization step: 3752. Total energy = 2757.0277 kcal/mol (2751.9836 without restraints) Performing minimization step: 3753. Total energy = 2756.8348 kcal/mol (2751.7902 without restraints) Performing minimization step: 3754. Total energy = 2756.6420 kcal/mol (2751.5971 without restraints) Performing minimization step: 3755. Total energy = 2756.4496 kcal/mol (2751.4041 without restraints) Performing minimization step: 3756. Total energy = 2756.2568 kcal/mol (2751.2108 without restraints) Performing minimization step: 3757. Total energy = 2756.0640 kcal/mol (2751.0174 without restraints) Performing minimization step: 3758. Total energy = 2755.8714 kcal/mol (2750.8243 without restraints) Performing minimization step: 3759. Total energy = 2755.6791 kcal/mol (2750.6316 without restraints) Performing minimization step: 3760. Total energy = 2755.4865 kcal/mol (2750.4385 without restraints) Performing minimization step: 3761. Total energy = 2755.2939 kcal/mol (2750.2453 without restraints) Performing minimization step: 3762. Total energy = 2755.1010 kcal/mol (2750.0520 without restraints) Performing minimization step: 3763. Total energy = 2754.9085 kcal/mol (2749.8590 without restraints) Performing minimization step: 3764. Total energy = 2754.7156 kcal/mol (2749.6656 without restraints) Performing minimization step: 3765. Total energy = 2754.5223 kcal/mol (2749.4718 without restraints) Performing minimization step: 3766. Total energy = 2754.3292 kcal/mol (2749.2781 without restraints) Performing minimization step: 3767. Total energy = 2754.1359 kcal/mol (2749.0844 without restraints) Performing minimization step: 3768. Total energy = 2753.9430 kcal/mol (2748.8910 without restraints) Performing minimization step: 3769. Total energy = 2753.7499 kcal/mol (2748.6974 without restraints) Performing minimization step: 3770. Total energy = 2753.5572 kcal/mol (2748.5042 without restraints) Performing minimization step: 3771. Total energy = 2753.3643 kcal/mol (2748.3108 without restraints) Performing minimization step: 3772. Total energy = 2753.1710 kcal/mol (2748.1169 without restraints) Performing minimization step: 3773. Total energy = 2752.9778 kcal/mol (2747.9233 without restraints) Performing minimization step: 3774. Total energy = 2752.7846 kcal/mol (2747.7296 without restraints) Performing minimization step: 3775. Total energy = 2752.5919 kcal/mol (2747.5363 without restraints) Performing minimization step: 3776. Total energy = 2752.3987 kcal/mol (2747.3427 without restraints) Performing minimization step: 3777. Total energy = 2752.2058 kcal/mol (2747.1490 without restraints) Performing minimization step: 3778. Total energy = 2752.0125 kcal/mol (2746.9554 without restraints) Performing minimization step: 3779. Total energy = 2751.8190 kcal/mol (2746.7614 without restraints) Performing minimization step: 3780. Total energy = 2751.6256 kcal/mol (2746.5677 without restraints) Performing minimization step: 3781. Total energy = 2751.4330 kcal/mol (2746.3745 without restraints) Performing minimization step: 3782. Total energy = 2751.2399 kcal/mol (2746.1809 without restraints) Performing minimization step: 3783. Total energy = 2751.0466 kcal/mol (2745.9870 without restraints) Performing minimization step: 3784. Total energy = 2750.8530 kcal/mol (2745.7930 without restraints) Performing minimization step: 3785. Total energy = 2750.6598 kcal/mol (2745.5992 without restraints) Performing minimization step: 3786. Total energy = 2750.4663 kcal/mol (2745.4053 without restraints) Performing minimization step: 3787. Total energy = 2750.2733 kcal/mol (2745.2117 without restraints) Performing minimization step: 3788. Total energy = 2750.0797 kcal/mol (2745.0177 without restraints) Performing minimization step: 3789. Total energy = 2749.8864 kcal/mol (2744.8238 without restraints) Performing minimization step: 3790. Total energy = 2749.6928 kcal/mol (2744.6297 without restraints) Performing minimization step: 3791. Total energy = 2749.4992 kcal/mol (2744.4356 without restraints) Performing minimization step: 3792. Total energy = 2749.3056 kcal/mol (2744.2417 without restraints) Performing minimization step: 3793. Total energy = 2749.1122 kcal/mol (2744.0477 without restraints) Performing minimization step: 3794. Total energy = 2748.9188 kcal/mol (2743.8538 without restraints) Performing minimization step: 3795. Total energy = 2748.7251 kcal/mol (2743.6596 without restraints) Performing minimization step: 3796. Total energy = 2748.5315 kcal/mol (2743.4655 without restraints) Performing minimization step: 3797. Total energy = 2748.3378 kcal/mol (2743.2712 without restraints) Performing minimization step: 3798. Total energy = 2748.1436 kcal/mol (2743.0765 without restraints) Performing minimization step: 3799. Total energy = 2747.9498 kcal/mol (2742.8822 without restraints) Performing minimization step: 3800. Total energy = 2747.7559 kcal/mol (2742.6877 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 2747.5617 kcal/mol (2742.4931 without restraints) Performing minimization step: 3802. Total energy = 2747.3680 kcal/mol (2742.2990 without restraints) Performing minimization step: 3803. Total energy = 2747.1740 kcal/mol (2742.1044 without restraints) Performing minimization step: 3804. Total energy = 2746.9795 kcal/mol (2741.9095 without restraints) Performing minimization step: 3805. Total energy = 2746.7852 kcal/mol (2741.7146 without restraints) Performing minimization step: 3806. Total energy = 2746.5910 kcal/mol (2741.5200 without restraints) Performing minimization step: 3807. Total energy = 2746.3967 kcal/mol (2741.3251 without restraints) Performing minimization step: 3808. Total energy = 2746.2025 kcal/mol (2741.1303 without restraints) Performing minimization step: 3809. Total energy = 2746.0080 kcal/mol (2740.9353 without restraints) Performing minimization step: 3810. Total energy = 2745.8134 kcal/mol (2740.7403 without restraints) Performing minimization step: 3811. Total energy = 2745.6184 kcal/mol (2740.5447 without restraints) Performing minimization step: 3812. Total energy = 2745.4240 kcal/mol (2740.3498 without restraints) Performing minimization step: 3813. Total energy = 2745.2292 kcal/mol (2740.1546 without restraints) Performing minimization step: 3814. Total energy = 2745.0346 kcal/mol (2739.9595 without restraints) Performing minimization step: 3815. Total energy = 2744.8401 kcal/mol (2739.7646 without restraints) Performing minimization step: 3816. Total energy = 2744.6451 kcal/mol (2739.5689 without restraints) Performing minimization step: 3817. Total energy = 2744.4500 kcal/mol (2739.3733 without restraints) Performing minimization step: 3818. Total energy = 2744.2549 kcal/mol (2739.1777 without restraints) Performing minimization step: 3819. Total energy = 2744.0590 kcal/mol (2738.9813 without restraints) Performing minimization step: 3820. Total energy = 2743.8636 kcal/mol (2738.7853 without restraints) Performing minimization step: 3821. Total energy = 2743.6680 kcal/mol (2738.5893 without restraints) Performing minimization step: 3822. Total energy = 2743.4726 kcal/mol (2738.3934 without restraints) Performing minimization step: 3823. Total energy = 2743.2771 kcal/mol (2738.1974 without restraints) Performing minimization step: 3824. Total energy = 2743.0815 kcal/mol (2738.0012 without restraints) Performing minimization step: 3825. Total energy = 2742.8866 kcal/mol (2737.8061 without restraints) Performing minimization step: 3826. Total energy = 2742.6911 kcal/mol (2737.6099 without restraints) Performing minimization step: 3827. Total energy = 2742.4951 kcal/mol (2737.4133 without restraints) Performing minimization step: 3828. Total energy = 2742.2994 kcal/mol (2737.2171 without restraints) Performing minimization step: 3829. Total energy = 2742.1037 kcal/mol (2737.0209 without restraints) Performing minimization step: 3830. Total energy = 2741.9076 kcal/mol (2736.8243 without restraints) Performing minimization step: 3831. Total energy = 2741.7115 kcal/mol (2736.6278 without restraints) Performing minimization step: 3832. Total energy = 2741.5154 kcal/mol (2736.4311 without restraints) Performing minimization step: 3833. Total energy = 2741.3188 kcal/mol (2736.2340 without restraints) Performing minimization step: 3834. Total energy = 2741.1223 kcal/mol (2736.0370 without restraints) Performing minimization step: 3835. Total energy = 2740.9255 kcal/mol (2735.8397 without restraints) Performing minimization step: 3836. Total energy = 2740.7290 kcal/mol (2735.6428 without restraints) Performing minimization step: 3837. Total energy = 2740.5324 kcal/mol (2735.4456 without restraints) Performing minimization step: 3838. Total energy = 2740.3353 kcal/mol (2735.2480 without restraints) Performing minimization step: 3839. Total energy = 2740.1384 kcal/mol (2735.0506 without restraints) Performing minimization step: 3840. Total energy = 2739.9411 kcal/mol (2734.8528 without restraints) Performing minimization step: 3841. Total energy = 2739.7441 kcal/mol (2734.6553 without restraints) Performing minimization step: 3842. Total energy = 2739.5469 kcal/mol (2734.4575 without restraints) Performing minimization step: 3843. Total energy = 2739.3495 kcal/mol (2734.2597 without restraints) Performing minimization step: 3844. Total energy = 2739.1530 kcal/mol (2734.0626 without restraints) Performing minimization step: 3845. Total energy = 2738.9554 kcal/mol (2733.8645 without restraints) Performing minimization step: 3846. Total energy = 2738.7579 kcal/mol (2733.6666 without restraints) Performing minimization step: 3847. Total energy = 2738.5603 kcal/mol (2733.4685 without restraints) Performing minimization step: 3848. Total energy = 2738.3625 kcal/mol (2733.2702 without restraints) Performing minimization step: 3849. Total energy = 2738.1648 kcal/mol (2733.0721 without restraints) Performing minimization step: 3850. Total energy = 2737.9667 kcal/mol (2732.8733 without restraints) Performing minimization step: 3851. Total energy = 2737.7682 kcal/mol (2732.6744 without restraints) Performing minimization step: 3852. Total energy = 2737.5699 kcal/mol (2732.4755 without restraints) Performing minimization step: 3853. Total energy = 2737.3711 kcal/mol (2732.2758 without restraints) Performing minimization step: 3854. Total energy = 2737.1719 kcal/mol (2732.0765 without restraints) Performing minimization step: 3855. Total energy = 2736.9731 kcal/mol (2731.8773 without restraints) Performing minimization step: 3856. Total energy = 2736.7741 kcal/mol (2731.6777 without restraints) Performing minimization step: 3857. Total energy = 2736.5749 kcal/mol (2731.4780 without restraints) Performing minimization step: 3858. Total energy = 2736.3763 kcal/mol (2731.2789 without restraints) Performing minimization step: 3859. Total energy = 2736.1767 kcal/mol (2731.0786 without restraints) Performing minimization step: 3860. Total energy = 2735.9769 kcal/mol (2730.8785 without restraints) Performing minimization step: 3861. Total energy = 2735.7778 kcal/mol (2730.6789 without restraints) Performing minimization step: 3862. Total energy = 2735.5779 kcal/mol (2730.4785 without restraints) Performing minimization step: 3863. Total energy = 2735.3779 kcal/mol (2730.2780 without restraints) Performing minimization step: 3864. Total energy = 2735.1782 kcal/mol (2730.0777 without restraints) Performing minimization step: 3865. Total energy = 2734.9782 kcal/mol (2729.8772 without restraints) Performing minimization step: 3866. Total energy = 2734.7775 kcal/mol (2729.6760 without restraints) Performing minimization step: 3867. Total energy = 2734.5768 kcal/mol (2729.4749 without restraints) Performing minimization step: 3868. Total energy = 2734.3761 kcal/mol (2729.2738 without restraints) Performing minimization step: 3869. Total energy = 2734.1752 kcal/mol (2729.0722 without restraints) Performing minimization step: 3870. Total energy = 2733.9743 kcal/mol (2728.8710 without restraints) Performing minimization step: 3871. Total energy = 2733.7734 kcal/mol (2728.6694 without restraints) Performing minimization step: 3872. Total energy = 2733.5721 kcal/mol (2728.4676 without restraints) Performing minimization step: 3873. Total energy = 2733.3704 kcal/mol (2728.2654 without restraints) Performing minimization step: 3874. Total energy = 2733.1689 kcal/mol (2728.0634 without restraints) Performing minimization step: 3875. Total energy = 2732.9668 kcal/mol (2727.8608 without restraints) Performing minimization step: 3876. Total energy = 2732.7648 kcal/mol (2727.6585 without restraints) Performing minimization step: 3877. Total energy = 2732.5633 kcal/mol (2727.4563 without restraints) Performing minimization step: 3878. Total energy = 2732.3607 kcal/mol (2727.2533 without restraints) Performing minimization step: 3879. Total energy = 2732.1580 kcal/mol (2727.0500 without restraints) Performing minimization step: 3880. Total energy = 2731.9555 kcal/mol (2726.8469 without restraints) Performing minimization step: 3881. Total energy = 2731.7525 kcal/mol (2726.6435 without restraints) Performing minimization step: 3882. Total energy = 2731.5491 kcal/mol (2726.4396 without restraints) Performing minimization step: 3883. Total energy = 2731.3459 kcal/mol (2726.2359 without restraints) Performing minimization step: 3884. Total energy = 2731.1428 kcal/mol (2726.0324 without restraints) Performing minimization step: 3885. Total energy = 2730.9392 kcal/mol (2725.8283 without restraints) Performing minimization step: 3886. Total energy = 2730.7353 kcal/mol (2725.6240 without restraints) Performing minimization step: 3887. Total energy = 2730.5312 kcal/mol (2725.4192 without restraints) Performing minimization step: 3888. Total energy = 2730.3267 kcal/mol (2725.2142 without restraints) Performing minimization step: 3889. Total energy = 2730.1220 kcal/mol (2725.0091 without restraints) Performing minimization step: 3890. Total energy = 2729.9170 kcal/mol (2724.8035 without restraints) Performing minimization step: 3891. Total energy = 2729.7119 kcal/mol (2724.5979 without restraints) Performing minimization step: 3892. Total energy = 2729.5068 kcal/mol (2724.3923 without restraints) Performing minimization step: 3893. Total energy = 2729.3018 kcal/mol (2724.1867 without restraints) Performing minimization step: 3894. Total energy = 2729.0964 kcal/mol (2723.9809 without restraints) Performing minimization step: 3895. Total energy = 2728.8909 kcal/mol (2723.7749 without restraints) Performing minimization step: 3896. Total energy = 2728.6851 kcal/mol (2723.5687 without restraints) Performing minimization step: 3897. Total energy = 2728.4786 kcal/mol (2723.3616 without restraints) Performing minimization step: 3898. Total energy = 2728.2718 kcal/mol (2723.1542 without restraints) Performing minimization step: 3899. Total energy = 2728.0651 kcal/mol (2722.9471 without restraints) Performing minimization step: 3900. Total energy = 2727.8580 kcal/mol (2722.7396 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 2727.6510 kcal/mol (2722.5321 without restraints) Performing minimization step: 3902. Total energy = 2727.4437 kcal/mol (2722.3244 without restraints) Performing minimization step: 3903. Total energy = 2727.2360 kcal/mol (2722.1160 without restraints) Performing minimization step: 3904. Total energy = 2727.0281 kcal/mol (2721.9078 without restraints) Performing minimization step: 3905. Total energy = 2726.8199 kcal/mol (2721.6989 without restraints) Performing minimization step: 3906. Total energy = 2726.6114 kcal/mol (2721.4900 without restraints) Performing minimization step: 3907. Total energy = 2726.4030 kcal/mol (2721.2811 without restraints) Performing minimization step: 3908. Total energy = 2726.1942 kcal/mol (2721.0718 without restraints) Performing minimization step: 3909. Total energy = 2725.9847 kcal/mol (2720.8618 without restraints) Performing minimization step: 3910. Total energy = 2725.7758 kcal/mol (2720.6524 without restraints) Performing minimization step: 3911. Total energy = 2725.5665 kcal/mol (2720.4428 without restraints) Performing minimization step: 3912. Total energy = 2725.3574 kcal/mol (2720.2331 without restraints) Performing minimization step: 3913. Total energy = 2725.1477 kcal/mol (2720.0228 without restraints) Performing minimization step: 3914. Total energy = 2724.9373 kcal/mol (2719.8119 without restraints) Performing minimization step: 3915. Total energy = 2724.7270 kcal/mol (2719.6011 without restraints) Performing minimization step: 3916. Total energy = 2724.5161 kcal/mol (2719.3896 without restraints) Performing minimization step: 3917. Total energy = 2724.3054 kcal/mol (2719.1785 without restraints) Performing minimization step: 3918. Total energy = 2724.0941 kcal/mol (2718.9668 without restraints) Performing minimization step: 3919. Total energy = 2723.8825 kcal/mol (2718.7547 without restraints) Performing minimization step: 3920. Total energy = 2723.6709 kcal/mol (2718.5427 without restraints) Performing minimization step: 3921. Total energy = 2723.4593 kcal/mol (2718.3305 without restraints) Performing minimization step: 3922. Total energy = 2723.2470 kcal/mol (2718.1178 without restraints) Performing minimization step: 3923. Total energy = 2723.0350 kcal/mol (2717.9053 without restraints) Performing minimization step: 3924. Total energy = 2722.8222 kcal/mol (2717.6919 without restraints) Performing minimization step: 3925. Total energy = 2722.6093 kcal/mol (2717.4785 without restraints) Performing minimization step: 3926. Total energy = 2722.3959 kcal/mol (2717.2647 without restraints) Performing minimization step: 3927. Total energy = 2722.1824 kcal/mol (2717.0507 without restraints) Performing minimization step: 3928. Total energy = 2721.9687 kcal/mol (2716.8365 without restraints) Performing minimization step: 3929. Total energy = 2721.7547 kcal/mol (2716.6221 without restraints) Performing minimization step: 3930. Total energy = 2721.5409 kcal/mol (2716.4079 without restraints) Performing minimization step: 3931. Total energy = 2721.3262 kcal/mol (2716.1926 without restraints) Performing minimization step: 3932. Total energy = 2721.1118 kcal/mol (2715.9778 without restraints) Performing minimization step: 3933. Total energy = 2720.8967 kcal/mol (2715.7621 without restraints) Performing minimization step: 3934. Total energy = 2720.6816 kcal/mol (2715.5466 without restraints) Performing minimization step: 3935. Total energy = 2720.4660 kcal/mol (2715.3304 without restraints) Performing minimization step: 3936. Total energy = 2720.2500 kcal/mol (2715.1140 without restraints) Performing minimization step: 3937. Total energy = 2720.0338 kcal/mol (2714.8973 without restraints) Performing minimization step: 3938. Total energy = 2719.8173 kcal/mol (2714.6804 without restraints) Performing minimization step: 3939. Total energy = 2719.6007 kcal/mol (2714.4633 without restraints) Performing minimization step: 3940. Total energy = 2719.3838 kcal/mol (2714.2458 without restraints) Performing minimization step: 3941. Total energy = 2719.1666 kcal/mol (2714.0283 without restraints) Performing minimization step: 3942. Total energy = 2718.9497 kcal/mol (2713.8107 without restraints) Performing minimization step: 3943. Total energy = 2718.7316 kcal/mol (2713.5923 without restraints) Performing minimization step: 3944. Total energy = 2718.5131 kcal/mol (2713.3733 without restraints) Performing minimization step: 3945. Total energy = 2718.2948 kcal/mol (2713.1545 without restraints) Performing minimization step: 3946. Total energy = 2718.0763 kcal/mol (2712.9355 without restraints) Performing minimization step: 3947. Total energy = 2717.8577 kcal/mol (2712.7164 without restraints) Performing minimization step: 3948. Total energy = 2717.6387 kcal/mol (2712.4969 without restraints) Performing minimization step: 3949. Total energy = 2717.4189 kcal/mol (2712.2767 without restraints) Performing minimization step: 3950. Total energy = 2717.1993 kcal/mol (2712.0566 without restraints) Performing minimization step: 3951. Total energy = 2716.9797 kcal/mol (2711.8365 without restraints) Performing minimization step: 3952. Total energy = 2716.7593 kcal/mol (2711.6157 without restraints) Performing minimization step: 3953. Total energy = 2716.5388 kcal/mol (2711.3947 without restraints) Performing minimization step: 3954. Total energy = 2716.3179 kcal/mol (2711.1732 without restraints) Performing minimization step: 3955. Total energy = 2716.0969 kcal/mol (2710.9518 without restraints) Performing minimization step: 3956. Total energy = 2715.8760 kcal/mol (2710.7306 without restraints) Performing minimization step: 3957. Total energy = 2715.6544 kcal/mol (2710.5084 without restraints) Performing minimization step: 3958. Total energy = 2715.4325 kcal/mol (2710.2861 without restraints) Performing minimization step: 3959. Total energy = 2715.2104 kcal/mol (2710.0636 without restraints) Performing minimization step: 3960. Total energy = 2714.9881 kcal/mol (2709.8407 without restraints) Performing minimization step: 3961. Total energy = 2714.7654 kcal/mol (2709.6177 without restraints) Performing minimization step: 3962. Total energy = 2714.5428 kcal/mol (2709.3945 without restraints) Performing minimization step: 3963. Total energy = 2714.3197 kcal/mol (2709.1709 without restraints) Performing minimization step: 3964. Total energy = 2714.0962 kcal/mol (2708.9470 without restraints) Performing minimization step: 3965. Total energy = 2713.8725 kcal/mol (2708.7228 without restraints) Performing minimization step: 3966. Total energy = 2713.6484 kcal/mol (2708.4983 without restraints) Performing minimization step: 3967. Total energy = 2713.4243 kcal/mol (2708.2738 without restraints) Performing minimization step: 3968. Total energy = 2713.1996 kcal/mol (2708.0486 without restraints) Performing minimization step: 3969. Total energy = 2712.9752 kcal/mol (2707.8237 without restraints) Performing minimization step: 3970. Total energy = 2712.7502 kcal/mol (2707.5982 without restraints) Performing minimization step: 3971. Total energy = 2712.5252 kcal/mol (2707.3728 without restraints) Performing minimization step: 3972. Total energy = 2712.3000 kcal/mol (2707.1471 without restraints) Performing minimization step: 3973. Total energy = 2712.0742 kcal/mol (2706.9209 without restraints) Performing minimization step: 3974. Total energy = 2711.8480 kcal/mol (2706.6942 without restraints) Performing minimization step: 3975. Total energy = 2711.6219 kcal/mol (2706.4677 without restraints) Performing minimization step: 3976. Total energy = 2711.3952 kcal/mol (2706.2405 without restraints) Performing minimization step: 3977. Total energy = 2711.1686 kcal/mol (2706.0136 without restraints) Performing minimization step: 3978. Total energy = 2710.9417 kcal/mol (2705.7862 without restraints) Performing minimization step: 3979. Total energy = 2710.7147 kcal/mol (2705.5587 without restraints) Performing minimization step: 3980. Total energy = 2710.4878 kcal/mol (2705.3313 without restraints) Performing minimization step: 3981. Total energy = 2710.2597 kcal/mol (2705.1029 without restraints) Performing minimization step: 3982. Total energy = 2710.0319 kcal/mol (2704.8745 without restraints) Performing minimization step: 3983. Total energy = 2709.8041 kcal/mol (2704.6463 without restraints) Performing minimization step: 3984. Total energy = 2709.5757 kcal/mol (2704.4175 without restraints) Performing minimization step: 3985. Total energy = 2709.3474 kcal/mol (2704.1885 without restraints) Performing minimization step: 3986. Total energy = 2709.1188 kcal/mol (2703.9596 without restraints) Performing minimization step: 3987. Total energy = 2708.8900 kcal/mol (2703.7303 without restraints) Performing minimization step: 3988. Total energy = 2708.6607 kcal/mol (2703.5006 without restraints) Performing minimization step: 3989. Total energy = 2708.4310 kcal/mol (2703.2705 without restraints) Performing minimization step: 3990. Total energy = 2708.2013 kcal/mol (2703.0403 without restraints) Performing minimization step: 3991. Total energy = 2707.9714 kcal/mol (2702.8100 without restraints) Performing minimization step: 3992. Total energy = 2707.7417 kcal/mol (2702.5799 without restraints) Performing minimization step: 3993. Total energy = 2707.5117 kcal/mol (2702.3494 without restraints) Performing minimization step: 3994. Total energy = 2707.2812 kcal/mol (2702.1185 without restraints) Performing minimization step: 3995. Total energy = 2707.0506 kcal/mol (2701.8874 without restraints) Performing minimization step: 3996. Total energy = 2706.8200 kcal/mol (2701.6566 without restraints) Performing minimization step: 3997. Total energy = 2706.5892 kcal/mol (2701.4252 without restraints) Performing minimization step: 3998. Total energy = 2706.3584 kcal/mol (2701.1941 without restraints) Performing minimization step: 3999. Total energy = 2706.1274 kcal/mol (2700.9625 without restraints) Performing minimization step: 4000. Total energy = 2705.8962 kcal/mol (2700.7309 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 2705.6647 kcal/mol (2700.4990 without restraints) Performing minimization step: 4002. Total energy = 2705.4335 kcal/mol (2700.2674 without restraints) Performing minimization step: 4003. Total energy = 2705.2018 kcal/mol (2700.0352 without restraints) Performing minimization step: 4004. Total energy = 2704.9696 kcal/mol (2699.8026 without restraints) Performing minimization step: 4005. Total energy = 2704.7373 kcal/mol (2699.5698 without restraints) Performing minimization step: 4006. Total energy = 2704.5050 kcal/mol (2699.3371 without restraints) Performing minimization step: 4007. Total energy = 2704.2726 kcal/mol (2699.1043 without restraints) Performing minimization step: 4008. Total energy = 2704.0393 kcal/mol (2698.8706 without restraints) Performing minimization step: 4009. Total energy = 2703.8066 kcal/mol (2698.6375 without restraints) Performing minimization step: 4010. Total energy = 2703.5739 kcal/mol (2698.4043 without restraints) Performing minimization step: 4011. Total energy = 2703.3409 kcal/mol (2698.1711 without restraints) Performing minimization step: 4012. Total energy = 2703.1079 kcal/mol (2697.9374 without restraints) Performing minimization step: 4013. Total energy = 2702.8749 kcal/mol (2697.7041 without restraints) Performing minimization step: 4014. Total energy = 2702.6416 kcal/mol (2697.4703 without restraints) Performing minimization step: 4015. Total energy = 2702.4080 kcal/mol (2697.2363 without restraints) Performing minimization step: 4016. Total energy = 2702.1743 kcal/mol (2697.0022 without restraints) Performing minimization step: 4017. Total energy = 2701.9408 kcal/mol (2696.7684 without restraints) Performing minimization step: 4018. Total energy = 2701.7068 kcal/mol (2696.5338 without restraints) Performing minimization step: 4019. Total energy = 2701.4734 kcal/mol (2696.3001 without restraints) Performing minimization step: 4020. Total energy = 2701.2398 kcal/mol (2696.0664 without restraints) Performing minimization step: 4021. Total energy = 2701.0058 kcal/mol (2695.8316 without restraints) Performing minimization step: 4022. Total energy = 2700.7716 kcal/mol (2695.5970 without restraints) Performing minimization step: 4023. Total energy = 2700.5375 kcal/mol (2695.3625 without restraints) Performing minimization step: 4024. Total energy = 2700.3031 kcal/mol (2695.1276 without restraints) Performing minimization step: 4025. Total energy = 2700.0690 kcal/mol (2694.8932 without restraints) Performing minimization step: 4026. Total energy = 2699.8349 kcal/mol (2694.6587 without restraints) Performing minimization step: 4027. Total energy = 2699.6003 kcal/mol (2694.4237 without restraints) Performing minimization step: 4028. Total energy = 2699.3661 kcal/mol (2694.1890 without restraints) Performing minimization step: 4029. Total energy = 2699.1319 kcal/mol (2693.9544 without restraints) Performing minimization step: 4030. Total energy = 2698.8972 kcal/mol (2693.7193 without restraints) Performing minimization step: 4031. Total energy = 2698.6626 kcal/mol (2693.4844 without restraints) Performing minimization step: 4032. Total energy = 2698.4282 kcal/mol (2693.2494 without restraints) Performing minimization step: 4033. Total energy = 2698.1933 kcal/mol (2693.0142 without restraints) Performing minimization step: 4034. Total energy = 2697.9583 kcal/mol (2692.7789 without restraints) Performing minimization step: 4035. Total energy = 2697.7239 kcal/mol (2692.5440 without restraints) Performing minimization step: 4036. Total energy = 2697.4888 kcal/mol (2692.3085 without restraints) Performing minimization step: 4037. Total energy = 2697.2539 kcal/mol (2692.0732 without restraints) Performing minimization step: 4038. Total energy = 2697.0196 kcal/mol (2691.8384 without restraints) Performing minimization step: 4039. Total energy = 2696.7846 kcal/mol (2691.6030 without restraints) Performing minimization step: 4040. Total energy = 2696.5496 kcal/mol (2691.3676 without restraints) Performing minimization step: 4041. Total energy = 2696.3148 kcal/mol (2691.1325 without restraints) Performing minimization step: 4042. Total energy = 2696.0801 kcal/mol (2690.8973 without restraints) Performing minimization step: 4043. Total energy = 2695.8451 kcal/mol (2690.6619 without restraints) Performing minimization step: 4044. Total energy = 2695.6101 kcal/mol (2690.4266 without restraints) Performing minimization step: 4045. Total energy = 2695.3754 kcal/mol (2690.1914 without restraints) Performing minimization step: 4046. Total energy = 2695.1410 kcal/mol (2689.9567 without restraints) Performing minimization step: 4047. Total energy = 2694.9062 kcal/mol (2689.7214 without restraints) Performing minimization step: 4048. Total energy = 2694.6716 kcal/mol (2689.4865 without restraints) Performing minimization step: 4049. Total energy = 2694.4368 kcal/mol (2689.2512 without restraints) Performing minimization step: 4050. Total energy = 2694.2022 kcal/mol (2689.0162 without restraints) Performing minimization step: 4051. Total energy = 2693.9673 kcal/mol (2688.7809 without restraints) Performing minimization step: 4052. Total energy = 2693.7329 kcal/mol (2688.5463 without restraints) Performing minimization step: 4053. Total energy = 2693.4982 kcal/mol (2688.3109 without restraints) Performing minimization step: 4054. Total energy = 2693.2633 kcal/mol (2688.0757 without restraints) Performing minimization step: 4055. Total energy = 2693.0287 kcal/mol (2687.8408 without restraints) Performing minimization step: 4056. Total energy = 2692.7945 kcal/mol (2687.6061 without restraints) Performing minimization step: 4057. Total energy = 2692.5596 kcal/mol (2687.3709 without restraints) Performing minimization step: 4058. Total energy = 2692.3251 kcal/mol (2687.1360 without restraints) Performing minimization step: 4059. Total energy = 2692.0907 kcal/mol (2686.9011 without restraints) Performing minimization step: 4060. Total energy = 2691.8562 kcal/mol (2686.6663 without restraints) Performing minimization step: 4061. Total energy = 2691.6221 kcal/mol (2686.4317 without restraints) Performing minimization step: 4062. Total energy = 2691.3878 kcal/mol (2686.1970 without restraints) Performing minimization step: 4063. Total energy = 2691.1535 kcal/mol (2685.9624 without restraints) Performing minimization step: 4064. Total energy = 2690.9193 kcal/mol (2685.7278 without restraints) Performing minimization step: 4065. Total energy = 2690.6852 kcal/mol (2685.4930 without restraints) Performing minimization step: 4066. Total energy = 2690.4509 kcal/mol (2685.2586 without restraints) Performing minimization step: 4067. Total energy = 2690.2169 kcal/mol (2685.0242 without restraints) Performing minimization step: 4068. Total energy = 2689.9827 kcal/mol (2684.7896 without restraints) Performing minimization step: 4069. Total energy = 2689.7488 kcal/mol (2684.5553 without restraints) Performing minimization step: 4070. Total energy = 2689.5150 kcal/mol (2684.3211 without restraints) Performing minimization step: 4071. Total energy = 2689.2812 kcal/mol (2684.0868 without restraints) Performing minimization step: 4072. Total energy = 2689.0477 kcal/mol (2683.8530 without restraints) Performing minimization step: 4073. Total energy = 2688.8145 kcal/mol (2683.6195 without restraints) Performing minimization step: 4074. Total energy = 2688.5816 kcal/mol (2683.3862 without restraints) Performing minimization step: 4075. Total energy = 2688.3488 kcal/mol (2683.1531 without restraints) Performing minimization step: 4076. Total energy = 2688.1158 kcal/mol (2682.9195 without restraints) Performing minimization step: 4077. Total energy = 2687.8824 kcal/mol (2682.6858 without restraints) Performing minimization step: 4078. Total energy = 2687.6489 kcal/mol (2682.4518 without restraints) Performing minimization step: 4079. Total energy = 2687.4157 kcal/mol (2682.2182 without restraints) Performing minimization step: 4080. Total energy = 2687.1829 kcal/mol (2681.9851 without restraints) Performing minimization step: 4081. Total energy = 2686.9501 kcal/mol (2681.7519 without restraints) Performing minimization step: 4082. Total energy = 2686.7170 kcal/mol (2681.5185 without restraints) Performing minimization step: 4083. Total energy = 2686.4842 kcal/mol (2681.2852 without restraints) Performing minimization step: 4084. Total energy = 2686.2512 kcal/mol (2681.0518 without restraints) Performing minimization step: 4085. Total energy = 2686.0186 kcal/mol (2680.8188 without restraints) Performing minimization step: 4086. Total energy = 2685.7862 kcal/mol (2680.5860 without restraints) Performing minimization step: 4087. Total energy = 2685.5538 kcal/mol (2680.3533 without restraints) Performing minimization step: 4088. Total energy = 2685.3212 kcal/mol (2680.1203 without restraints) Performing minimization step: 4089. Total energy = 2685.0889 kcal/mol (2679.8875 without restraints) Performing minimization step: 4090. Total energy = 2684.8566 kcal/mol (2679.6548 without restraints) Performing minimization step: 4091. Total energy = 2684.6246 kcal/mol (2679.4225 without restraints) Performing minimization step: 4092. Total energy = 2684.3924 kcal/mol (2679.1899 without restraints) Performing minimization step: 4093. Total energy = 2684.1608 kcal/mol (2678.9579 without restraints) Performing minimization step: 4094. Total energy = 2683.9288 kcal/mol (2678.7255 without restraints) Performing minimization step: 4095. Total energy = 2683.6966 kcal/mol (2678.4929 without restraints) Performing minimization step: 4096. Total energy = 2683.4649 kcal/mol (2678.2608 without restraints) Performing minimization step: 4097. Total energy = 2683.2334 kcal/mol (2678.0289 without restraints) Performing minimization step: 4098. Total energy = 2683.0022 kcal/mol (2677.7973 without restraints) Performing minimization step: 4099. Total energy = 2682.7705 kcal/mol (2677.5652 without restraints) Performing minimization step: 4100. Total energy = 2682.5388 kcal/mol (2677.3331 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 2682.3071 kcal/mol (2677.1010 without restraints) Performing minimization step: 4102. Total energy = 2682.0757 kcal/mol (2676.8692 without restraints) Performing minimization step: 4103. Total energy = 2681.8443 kcal/mol (2676.6375 without restraints) Performing minimization step: 4104. Total energy = 2681.6132 kcal/mol (2676.4060 without restraints) Performing minimization step: 4105. Total energy = 2681.3819 kcal/mol (2676.1742 without restraints) Performing minimization step: 4106. Total energy = 2681.1508 kcal/mol (2675.9427 without restraints) Performing minimization step: 4107. Total energy = 2680.9194 kcal/mol (2675.7108 without restraints) Performing minimization step: 4108. Total energy = 2680.6882 kcal/mol (2675.4793 without restraints) Performing minimization step: 4109. Total energy = 2680.4573 kcal/mol (2675.2480 without restraints) Performing minimization step: 4110. Total energy = 2680.2261 kcal/mol (2675.0165 without restraints) Performing minimization step: 4111. Total energy = 2679.9954 kcal/mol (2674.7854 without restraints) Performing minimization step: 4112. Total energy = 2679.7642 kcal/mol (2674.5537 without restraints) Performing minimization step: 4113. Total energy = 2679.5332 kcal/mol (2674.3223 without restraints) Performing minimization step: 4114. Total energy = 2679.3023 kcal/mol (2674.0910 without restraints) Performing minimization step: 4115. Total energy = 2679.0711 kcal/mol (2673.8595 without restraints) Performing minimization step: 4116. Total energy = 2678.8405 kcal/mol (2673.6287 without restraints) Performing minimization step: 4117. Total energy = 2678.6101 kcal/mol (2673.3977 without restraints) Performing minimization step: 4118. Total energy = 2678.3792 kcal/mol (2673.1663 without restraints) Performing minimization step: 4119. Total energy = 2678.1483 kcal/mol (2672.9350 without restraints) Performing minimization step: 4120. Total energy = 2677.9177 kcal/mol (2672.7040 without restraints) Performing minimization step: 4121. Total energy = 2677.6870 kcal/mol (2672.4729 without restraints) Performing minimization step: 4122. Total energy = 2677.4561 kcal/mol (2672.2417 without restraints) Performing minimization step: 4123. Total energy = 2677.2256 kcal/mol (2672.0108 without restraints) Performing minimization step: 4124. Total energy = 2676.9953 kcal/mol (2671.7803 without restraints) Performing minimization step: 4125. Total energy = 2676.7652 kcal/mol (2671.5496 without restraints) Performing minimization step: 4126. Total energy = 2676.5347 kcal/mol (2671.3187 without restraints) Performing minimization step: 4127. Total energy = 2676.3046 kcal/mol (2671.0882 without restraints) Performing minimization step: 4128. Total energy = 2676.0745 kcal/mol (2670.8577 without restraints) Performing minimization step: 4129. Total energy = 2675.8442 kcal/mol (2670.6270 without restraints) Performing minimization step: 4130. Total energy = 2675.6137 kcal/mol (2670.3961 without restraints) Performing minimization step: 4131. Total energy = 2675.3834 kcal/mol (2670.1655 without restraints) Performing minimization step: 4132. Total energy = 2675.1533 kcal/mol (2669.9351 without restraints) Performing minimization step: 4133. Total energy = 2674.9230 kcal/mol (2669.7042 without restraints) Performing minimization step: 4134. Total energy = 2674.6928 kcal/mol (2669.4736 without restraints) Performing minimization step: 4135. Total energy = 2674.4627 kcal/mol (2669.2431 without restraints) Performing minimization step: 4136. Total energy = 2674.2325 kcal/mol (2669.0125 without restraints) Performing minimization step: 4137. Total energy = 2674.0025 kcal/mol (2668.7821 without restraints) Performing minimization step: 4138. Total energy = 2673.7724 kcal/mol (2668.5515 without restraints) Performing minimization step: 4139. Total energy = 2673.5421 kcal/mol (2668.3210 without restraints) Performing minimization step: 4140. Total energy = 2673.3118 kcal/mol (2668.0902 without restraints) Performing minimization step: 4141. Total energy = 2673.0820 kcal/mol (2667.8601 without restraints) Performing minimization step: 4142. Total energy = 2672.8522 kcal/mol (2667.6298 without restraints) Performing minimization step: 4143. Total energy = 2672.6221 kcal/mol (2667.3994 without restraints) Performing minimization step: 4144. Total energy = 2672.3920 kcal/mol (2667.1689 without restraints) Performing minimization step: 4145. Total energy = 2672.1620 kcal/mol (2666.9384 without restraints) Performing minimization step: 4146. Total energy = 2671.9327 kcal/mol (2666.7088 without restraints) Performing minimization step: 4147. Total energy = 2671.7029 kcal/mol (2666.4786 without restraints) Performing minimization step: 4148. Total energy = 2671.4729 kcal/mol (2666.2482 without restraints) Performing minimization step: 4149. Total energy = 2671.2427 kcal/mol (2666.0176 without restraints) Performing minimization step: 4150. Total energy = 2671.0132 kcal/mol (2665.7878 without restraints) Performing minimization step: 4151. Total energy = 2670.7834 kcal/mol (2665.5574 without restraints) Performing minimization step: 4152. Total energy = 2670.5534 kcal/mol (2665.3270 without restraints) Performing minimization step: 4153. Total energy = 2670.3236 kcal/mol (2665.0969 without restraints) Performing minimization step: 4154. Total energy = 2670.0937 kcal/mol (2664.8666 without restraints) Performing minimization step: 4155. Total energy = 2669.8638 kcal/mol (2664.6363 without restraints) Performing minimization step: 4156. Total energy = 2669.6337 kcal/mol (2664.4058 without restraints) Performing minimization step: 4157. Total energy = 2669.4044 kcal/mol (2664.1762 without restraints) Performing minimization step: 4158. Total energy = 2669.1746 kcal/mol (2663.9459 without restraints) Performing minimization step: 4159. Total energy = 2668.9451 kcal/mol (2663.7160 without restraints) Performing minimization step: 4160. Total energy = 2668.7154 kcal/mol (2663.4860 without restraints) Performing minimization step: 4161. Total energy = 2668.4860 kcal/mol (2663.2561 without restraints) Performing minimization step: 4162. Total energy = 2668.2562 kcal/mol (2663.0260 without restraints) Performing minimization step: 4163. Total energy = 2668.0265 kcal/mol (2662.7959 without restraints) Performing minimization step: 4164. Total energy = 2667.7969 kcal/mol (2662.5659 without restraints) Performing minimization step: 4165. Total energy = 2667.5673 kcal/mol (2662.3358 without restraints) Performing minimization step: 4166. Total energy = 2667.3378 kcal/mol (2662.1060 without restraints) Performing minimization step: 4167. Total energy = 2667.1078 kcal/mol (2661.8756 without restraints) Performing minimization step: 4168. Total energy = 2666.8780 kcal/mol (2661.6453 without restraints) Performing minimization step: 4169. Total energy = 2666.6487 kcal/mol (2661.4156 without restraints) Performing minimization step: 4170. Total energy = 2666.4190 kcal/mol (2661.1856 without restraints) Performing minimization step: 4171. Total energy = 2666.1895 kcal/mol (2660.9557 without restraints) Performing minimization step: 4172. Total energy = 2665.9599 kcal/mol (2660.7257 without restraints) Performing minimization step: 4173. Total energy = 2665.7306 kcal/mol (2660.4959 without restraints) Performing minimization step: 4174. Total energy = 2665.5014 kcal/mol (2660.2665 without restraints) Performing minimization step: 4175. Total energy = 2665.2720 kcal/mol (2660.0366 without restraints) Performing minimization step: 4176. Total energy = 2665.0424 kcal/mol (2659.8067 without restraints) Performing minimization step: 4177. Total energy = 2664.8132 kcal/mol (2659.5771 without restraints) Performing minimization step: 4178. Total energy = 2664.5839 kcal/mol (2659.3473 without restraints) Performing minimization step: 4179. Total energy = 2664.3550 kcal/mol (2659.1180 without restraints) Performing minimization step: 4180. Total energy = 2664.1256 kcal/mol (2658.8884 without restraints) Performing minimization step: 4181. Total energy = 2663.8965 kcal/mol (2658.6588 without restraints) Performing minimization step: 4182. Total energy = 2663.6676 kcal/mol (2658.4294 without restraints) Performing minimization step: 4183. Total energy = 2663.4386 kcal/mol (2658.2001 without restraints) Performing minimization step: 4184. Total energy = 2663.2094 kcal/mol (2657.9705 without restraints) Performing minimization step: 4185. Total energy = 2662.9801 kcal/mol (2657.7408 without restraints) Performing minimization step: 4186. Total energy = 2662.7510 kcal/mol (2657.5113 without restraints) Performing minimization step: 4187. Total energy = 2662.5220 kcal/mol (2657.2819 without restraints) Performing minimization step: 4188. Total energy = 2662.2930 kcal/mol (2657.0525 without restraints) Performing minimization step: 4189. Total energy = 2662.0647 kcal/mol (2656.8238 without restraints) Performing minimization step: 4190. Total energy = 2661.8360 kcal/mol (2656.5947 without restraints) Performing minimization step: 4191. Total energy = 2661.6074 kcal/mol (2656.3659 without restraints) Performing minimization step: 4192. Total energy = 2661.3787 kcal/mol (2656.1367 without restraints) Performing minimization step: 4193. Total energy = 2661.1500 kcal/mol (2655.9076 without restraints) Performing minimization step: 4194. Total energy = 2660.9213 kcal/mol (2655.6785 without restraints) Performing minimization step: 4195. Total energy = 2660.6927 kcal/mol (2655.4495 without restraints) Performing minimization step: 4196. Total energy = 2660.4641 kcal/mol (2655.2205 without restraints) Performing minimization step: 4197. Total energy = 2660.2355 kcal/mol (2654.9916 without restraints) Performing minimization step: 4198. Total energy = 2660.0071 kcal/mol (2654.7627 without restraints) Performing minimization step: 4199. Total energy = 2659.7789 kcal/mol (2654.5341 without restraints) Performing minimization step: 4200. Total energy = 2659.5505 kcal/mol (2654.3054 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 2659.3229 kcal/mol (2654.0774 without restraints) Performing minimization step: 4202. Total energy = 2659.0947 kcal/mol (2653.8488 without restraints) Performing minimization step: 4203. Total energy = 2658.8667 kcal/mol (2653.6204 without restraints) Performing minimization step: 4204. Total energy = 2658.6386 kcal/mol (2653.3919 without restraints) Performing minimization step: 4205. Total energy = 2658.4106 kcal/mol (2653.1635 without restraints) Performing minimization step: 4206. Total energy = 2658.1833 kcal/mol (2652.9358 without restraints) Performing minimization step: 4207. Total energy = 2657.9554 kcal/mol (2652.7076 without restraints) Performing minimization step: 4208. Total energy = 2657.7275 kcal/mol (2652.4793 without restraints) Performing minimization step: 4209. Total energy = 2657.5001 kcal/mol (2652.2514 without restraints) Performing minimization step: 4210. Total energy = 2657.2724 kcal/mol (2652.0234 without restraints) Performing minimization step: 4211. Total energy = 2657.0449 kcal/mol (2651.7956 without restraints) Performing minimization step: 4212. Total energy = 2656.8175 kcal/mol (2651.5677 without restraints) Performing minimization step: 4213. Total energy = 2656.5901 kcal/mol (2651.3399 without restraints) Performing minimization step: 4214. Total energy = 2656.3628 kcal/mol (2651.1122 without restraints) Performing minimization step: 4215. Total energy = 2656.1358 kcal/mol (2650.8849 without restraints) Performing minimization step: 4216. Total energy = 2655.9091 kcal/mol (2650.6578 without restraints) Performing minimization step: 4217. Total energy = 2655.6825 kcal/mol (2650.4308 without restraints) Performing minimization step: 4218. Total energy = 2655.4554 kcal/mol (2650.2034 without restraints) Performing minimization step: 4219. Total energy = 2655.2287 kcal/mol (2649.9762 without restraints) Performing minimization step: 4220. Total energy = 2655.0022 kcal/mol (2649.7493 without restraints) Performing minimization step: 4221. Total energy = 2654.7755 kcal/mol (2649.5223 without restraints) Performing minimization step: 4222. Total energy = 2654.5490 kcal/mol (2649.2954 without restraints) Performing minimization step: 4223. Total energy = 2654.3228 kcal/mol (2649.0689 without restraints) Performing minimization step: 4224. Total energy = 2654.0967 kcal/mol (2648.8423 without restraints) Performing minimization step: 4225. Total energy = 2653.8705 kcal/mol (2648.6157 without restraints) Performing minimization step: 4226. Total energy = 2653.6445 kcal/mol (2648.3894 without restraints) Performing minimization step: 4227. Total energy = 2653.4185 kcal/mol (2648.1631 without restraints) Performing minimization step: 4228. Total energy = 2653.1929 kcal/mol (2647.9371 without restraints) Performing minimization step: 4229. Total energy = 2652.9671 kcal/mol (2647.7109 without restraints) Performing minimization step: 4230. Total energy = 2652.7413 kcal/mol (2647.4846 without restraints) Performing minimization step: 4231. Total energy = 2652.5159 kcal/mol (2647.2589 without restraints) Performing minimization step: 4232. Total energy = 2652.2905 kcal/mol (2647.0331 without restraints) Performing minimization step: 4233. Total energy = 2652.0650 kcal/mol (2646.8073 without restraints) Performing minimization step: 4234. Total energy = 2651.8399 kcal/mol (2646.5819 without restraints) Performing minimization step: 4235. Total energy = 2651.6152 kcal/mol (2646.3567 without restraints) Performing minimization step: 4236. Total energy = 2651.3903 kcal/mol (2646.1314 without restraints) Performing minimization step: 4237. Total energy = 2651.1655 kcal/mol (2645.9062 without restraints) Performing minimization step: 4238. Total energy = 2650.9408 kcal/mol (2645.6811 without restraints) Performing minimization step: 4239. Total energy = 2650.7166 kcal/mol (2645.4568 without restraints) Performing minimization step: 4240. Total energy = 2650.4924 kcal/mol (2645.2320 without restraints) Performing minimization step: 4241. Total energy = 2650.2681 kcal/mol (2645.0073 without restraints) Performing minimization step: 4242. Total energy = 2650.0443 kcal/mol (2644.7831 without restraints) Performing minimization step: 4243. Total energy = 2649.8206 kcal/mol (2644.5590 without restraints) Performing minimization step: 4244. Total energy = 2649.5971 kcal/mol (2644.3351 without restraints) Performing minimization step: 4245. Total energy = 2649.3733 kcal/mol (2644.1110 without restraints) Performing minimization step: 4246. Total energy = 2649.1496 kcal/mol (2643.8871 without restraints) Performing minimization step: 4247. Total energy = 2648.9264 kcal/mol (2643.6634 without restraints) Performing minimization step: 4248. Total energy = 2648.7031 kcal/mol (2643.4396 without restraints) Performing minimization step: 4249. Total energy = 2648.4798 kcal/mol (2643.2160 without restraints) Performing minimization step: 4250. Total energy = 2648.2562 kcal/mol (2642.9920 without restraints) Performing minimization step: 4251. Total energy = 2648.0333 kcal/mol (2642.7687 without restraints) Performing minimization step: 4252. Total energy = 2647.8105 kcal/mol (2642.5455 without restraints) Performing minimization step: 4253. Total energy = 2647.5880 kcal/mol (2642.3226 without restraints) Performing minimization step: 4254. Total energy = 2647.3651 kcal/mol (2642.0994 without restraints) Performing minimization step: 4255. Total energy = 2647.1430 kcal/mol (2641.8770 without restraints) Performing minimization step: 4256. Total energy = 2646.9208 kcal/mol (2641.6543 without restraints) Performing minimization step: 4257. Total energy = 2646.6988 kcal/mol (2641.4319 without restraints) Performing minimization step: 4258. Total energy = 2646.4768 kcal/mol (2641.2095 without restraints) Performing minimization step: 4259. Total energy = 2646.2550 kcal/mol (2640.9873 without restraints) Performing minimization step: 4260. Total energy = 2646.0335 kcal/mol (2640.7654 without restraints) Performing minimization step: 4261. Total energy = 2645.8120 kcal/mol (2640.5436 without restraints) Performing minimization step: 4262. Total energy = 2645.5908 kcal/mol (2640.3220 without restraints) Performing minimization step: 4263. Total energy = 2645.3695 kcal/mol (2640.1004 without restraints) Performing minimization step: 4264. Total energy = 2645.1489 kcal/mol (2639.8795 without restraints) Performing minimization step: 4265. Total energy = 2644.9281 kcal/mol (2639.6581 without restraints) Performing minimization step: 4266. Total energy = 2644.7075 kcal/mol (2639.4372 without restraints) Performing minimization step: 4267. Total energy = 2644.4867 kcal/mol (2639.2159 without restraints) Performing minimization step: 4268. Total energy = 2644.2661 kcal/mol (2638.9951 without restraints) Performing minimization step: 4269. Total energy = 2644.0459 kcal/mol (2638.7745 without restraints) Performing minimization step: 4270. Total energy = 2643.8258 kcal/mol (2638.5540 without restraints) Performing minimization step: 4271. Total energy = 2643.6059 kcal/mol (2638.3339 without restraints) Performing minimization step: 4272. Total energy = 2643.3859 kcal/mol (2638.1133 without restraints) Performing minimization step: 4273. Total energy = 2643.1665 kcal/mol (2637.8936 without restraints) Performing minimization step: 4274. Total energy = 2642.9470 kcal/mol (2637.6736 without restraints) Performing minimization step: 4275. Total energy = 2642.7275 kcal/mol (2637.4538 without restraints) Performing minimization step: 4276. Total energy = 2642.5082 kcal/mol (2637.2341 without restraints) Performing minimization step: 4277. Total energy = 2642.2892 kcal/mol (2637.0147 without restraints) Performing minimization step: 4278. Total energy = 2642.0698 kcal/mol (2636.7950 without restraints) Performing minimization step: 4279. Total energy = 2641.8511 kcal/mol (2636.5761 without restraints) Performing minimization step: 4280. Total energy = 2641.6325 kcal/mol (2636.3569 without restraints) Performing minimization step: 4281. Total energy = 2641.4141 kcal/mol (2636.1381 without restraints) Performing minimization step: 4282. Total energy = 2641.1958 kcal/mol (2635.9195 without restraints) Performing minimization step: 4283. Total energy = 2640.9777 kcal/mol (2635.7010 without restraints) Performing minimization step: 4284. Total energy = 2640.7597 kcal/mol (2635.4825 without restraints) Performing minimization step: 4285. Total energy = 2640.5416 kcal/mol (2635.2641 without restraints) Performing minimization step: 4286. Total energy = 2640.3239 kcal/mol (2635.0460 without restraints) Performing minimization step: 4287. Total energy = 2640.1062 kcal/mol (2634.8279 without restraints) Performing minimization step: 4288. Total energy = 2639.8886 kcal/mol (2634.6099 without restraints) Performing minimization step: 4289. Total energy = 2639.6712 kcal/mol (2634.3922 without restraints) Performing minimization step: 4290. Total energy = 2639.4539 kcal/mol (2634.1745 without restraints) Performing minimization step: 4291. Total energy = 2639.2368 kcal/mol (2633.9570 without restraints) Performing minimization step: 4292. Total energy = 2639.0197 kcal/mol (2633.7395 without restraints) Performing minimization step: 4293. Total energy = 2638.8029 kcal/mol (2633.5224 without restraints) Performing minimization step: 4294. Total energy = 2638.5864 kcal/mol (2633.3055 without restraints) Performing minimization step: 4295. Total energy = 2638.3700 kcal/mol (2633.0886 without restraints) Performing minimization step: 4296. Total energy = 2638.1534 kcal/mol (2632.8715 without restraints) Performing minimization step: 4297. Total energy = 2637.9369 kcal/mol (2632.6548 without restraints) Performing minimization step: 4298. Total energy = 2637.7207 kcal/mol (2632.4382 without restraints) Performing minimization step: 4299. Total energy = 2637.5048 kcal/mol (2632.2219 without restraints) Performing minimization step: 4300. Total energy = 2637.2890 kcal/mol (2632.0058 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 2637.0732 kcal/mol (2631.7896 without restraints) Performing minimization step: 4302. Total energy = 2636.8575 kcal/mol (2631.5734 without restraints) Performing minimization step: 4303. Total energy = 2636.6419 kcal/mol (2631.3573 without restraints) Performing minimization step: 4304. Total energy = 2636.4264 kcal/mol (2631.1416 without restraints) Performing minimization step: 4305. Total energy = 2636.2111 kcal/mol (2630.9259 without restraints) Performing minimization step: 4306. Total energy = 2635.9962 kcal/mol (2630.7106 without restraints) Performing minimization step: 4307. Total energy = 2635.7811 kcal/mol (2630.4952 without restraints) Performing minimization step: 4308. Total energy = 2635.5665 kcal/mol (2630.2802 without restraints) Performing minimization step: 4309. Total energy = 2635.3518 kcal/mol (2630.0651 without restraints) Performing minimization step: 4310. Total energy = 2635.1374 kcal/mol (2629.8503 without restraints) Performing minimization step: 4311. Total energy = 2634.9232 kcal/mol (2629.6360 without restraints) Performing minimization step: 4312. Total energy = 2634.7093 kcal/mol (2629.4214 without restraints) Performing minimization step: 4313. Total energy = 2634.4951 kcal/mol (2629.2068 without restraints) Performing minimization step: 4314. Total energy = 2634.2809 kcal/mol (2628.9921 without restraints) Performing minimization step: 4315. Total energy = 2634.0665 kcal/mol (2628.7775 without restraints) Performing minimization step: 4316. Total energy = 2633.8527 kcal/mol (2628.5633 without restraints) Performing minimization step: 4317. Total energy = 2633.6394 kcal/mol (2628.3496 without restraints) Performing minimization step: 4318. Total energy = 2633.4260 kcal/mol (2628.1358 without restraints) Performing minimization step: 4319. Total energy = 2633.2122 kcal/mol (2627.9216 without restraints) Performing minimization step: 4320. Total energy = 2632.9990 kcal/mol (2627.7080 without restraints) Performing minimization step: 4321. Total energy = 2632.7855 kcal/mol (2627.4942 without restraints) Performing minimization step: 4322. Total energy = 2632.5726 kcal/mol (2627.2809 without restraints) Performing minimization step: 4323. Total energy = 2632.3596 kcal/mol (2627.0675 without restraints) Performing minimization step: 4324. Total energy = 2632.1472 kcal/mol (2626.8546 without restraints) Performing minimization step: 4325. Total energy = 2631.9343 kcal/mol (2626.6413 without restraints) Performing minimization step: 4326. Total energy = 2631.7217 kcal/mol (2626.4284 without restraints) Performing minimization step: 4327. Total energy = 2631.5092 kcal/mol (2626.2155 without restraints) Performing minimization step: 4328. Total energy = 2631.2975 kcal/mol (2626.0038 without restraints) Performing minimization step: 4329. Total energy = 2631.0855 kcal/mol (2625.7910 without restraints) Performing minimization step: 4330. Total energy = 2630.8733 kcal/mol (2625.5785 without restraints) Performing minimization step: 4331. Total energy = 2630.6612 kcal/mol (2625.3660 without restraints) Performing minimization step: 4332. Total energy = 2630.4493 kcal/mol (2625.1537 without restraints) Performing minimization step: 4333. Total energy = 2630.2374 kcal/mol (2624.9414 without restraints) Performing minimization step: 4334. Total energy = 2630.0257 kcal/mol (2624.7293 without restraints) Performing minimization step: 4335. Total energy = 2629.8141 kcal/mol (2624.5173 without restraints) Performing minimization step: 4336. Total energy = 2629.6028 kcal/mol (2624.3058 without restraints) Performing minimization step: 4337. Total energy = 2629.3917 kcal/mol (2624.0942 without restraints) Performing minimization step: 4338. Total energy = 2629.1805 kcal/mol (2623.8825 without restraints) Performing minimization step: 4339. Total energy = 2628.9696 kcal/mol (2623.6714 without restraints) Performing minimization step: 4340. Total energy = 2628.7586 kcal/mol (2623.4599 without restraints) Performing minimization step: 4341. Total energy = 2628.5478 kcal/mol (2623.2487 without restraints) Performing minimization step: 4342. Total energy = 2628.3370 kcal/mol (2623.0375 without restraints) Performing minimization step: 4343. Total energy = 2628.1263 kcal/mol (2622.8265 without restraints) Performing minimization step: 4344. Total energy = 2627.9157 kcal/mol (2622.6154 without restraints) Performing minimization step: 4345. Total energy = 2627.7052 kcal/mol (2622.4046 without restraints) Performing minimization step: 4346. Total energy = 2627.4950 kcal/mol (2622.1940 without restraints) Performing minimization step: 4347. Total energy = 2627.2845 kcal/mol (2621.9830 without restraints) Performing minimization step: 4348. Total energy = 2627.0740 kcal/mol (2621.7722 without restraints) Performing minimization step: 4349. Total energy = 2626.8639 kcal/mol (2621.5617 without restraints) Performing minimization step: 4350. Total energy = 2626.6542 kcal/mol (2621.3518 without restraints) Performing minimization step: 4351. Total energy = 2626.4445 kcal/mol (2621.1415 without restraints) Performing minimization step: 4352. Total energy = 2626.2346 kcal/mol (2620.9312 without restraints) Performing minimization step: 4353. Total energy = 2626.0251 kcal/mol (2620.7213 without restraints) Performing minimization step: 4354. Total energy = 2625.8154 kcal/mol (2620.5113 without restraints) Performing minimization step: 4355. Total energy = 2625.6059 kcal/mol (2620.3013 without restraints) Performing minimization step: 4356. Total energy = 2625.3962 kcal/mol (2620.0912 without restraints) Performing minimization step: 4357. Total energy = 2625.1868 kcal/mol (2619.8815 without restraints) Performing minimization step: 4358. Total energy = 2624.9775 kcal/mol (2619.6718 without restraints) Performing minimization step: 4359. Total energy = 2624.7684 kcal/mol (2619.4624 without restraints) Performing minimization step: 4360. Total energy = 2624.5595 kcal/mol (2619.2530 without restraints) Performing minimization step: 4361. Total energy = 2624.3509 kcal/mol (2619.0440 without restraints) Performing minimization step: 4362. Total energy = 2624.1420 kcal/mol (2618.8347 without restraints) Performing minimization step: 4363. Total energy = 2623.9334 kcal/mol (2618.6257 without restraints) Performing minimization step: 4364. Total energy = 2623.7251 kcal/mol (2618.4170 without restraints) Performing minimization step: 4365. Total energy = 2623.5165 kcal/mol (2618.2081 without restraints) Performing minimization step: 4366. Total energy = 2623.3080 kcal/mol (2617.9991 without restraints) Performing minimization step: 4367. Total energy = 2623.0997 kcal/mol (2617.7906 without restraints) Performing minimization step: 4368. Total energy = 2622.8914 kcal/mol (2617.5818 without restraints) Performing minimization step: 4369. Total energy = 2622.6837 kcal/mol (2617.3737 without restraints) Performing minimization step: 4370. Total energy = 2622.4753 kcal/mol (2617.1649 without restraints) Performing minimization step: 4371. Total energy = 2622.2675 kcal/mol (2616.9567 without restraints) Performing minimization step: 4372. Total energy = 2622.0593 kcal/mol (2616.7482 without restraints) Performing minimization step: 4373. Total energy = 2621.8516 kcal/mol (2616.5401 without restraints) Performing minimization step: 4374. Total energy = 2621.6438 kcal/mol (2616.3318 without restraints) Performing minimization step: 4375. Total energy = 2621.4365 kcal/mol (2616.1241 without restraints) Performing minimization step: 4376. Total energy = 2621.2288 kcal/mol (2615.9161 without restraints) Performing minimization step: 4377. Total energy = 2621.0212 kcal/mol (2615.7082 without restraints) Performing minimization step: 4378. Total energy = 2620.8147 kcal/mol (2615.5012 without restraints) Performing minimization step: 4379. Total energy = 2620.6073 kcal/mol (2615.2934 without restraints) Performing minimization step: 4380. Total energy = 2620.4000 kcal/mol (2615.0856 without restraints) Performing minimization step: 4381. Total energy = 2620.1927 kcal/mol (2614.8780 without restraints) Performing minimization step: 4382. Total energy = 2619.9855 kcal/mol (2614.6704 without restraints) Performing minimization step: 4383. Total energy = 2619.7786 kcal/mol (2614.4633 without restraints) Performing minimization step: 4384. Total energy = 2619.5718 kcal/mol (2614.2560 without restraints) Performing minimization step: 4385. Total energy = 2619.3651 kcal/mol (2614.0489 without restraints) Performing minimization step: 4386. Total energy = 2619.1583 kcal/mol (2613.8417 without restraints) Performing minimization step: 4387. Total energy = 2618.9516 kcal/mol (2613.6345 without restraints) Performing minimization step: 4388. Total energy = 2618.7449 kcal/mol (2613.4275 without restraints) Performing minimization step: 4389. Total energy = 2618.5384 kcal/mol (2613.2207 without restraints) Performing minimization step: 4390. Total energy = 2618.3320 kcal/mol (2613.0138 without restraints) Performing minimization step: 4391. Total energy = 2618.1255 kcal/mol (2612.8069 without restraints) Performing minimization step: 4392. Total energy = 2617.9192 kcal/mol (2612.6003 without restraints) Performing minimization step: 4393. Total energy = 2617.7129 kcal/mol (2612.3935 without restraints) Performing minimization step: 4394. Total energy = 2617.5071 kcal/mol (2612.1873 without restraints) Performing minimization step: 4395. Total energy = 2617.3012 kcal/mol (2611.9810 without restraints) Performing minimization step: 4396. Total energy = 2617.0953 kcal/mol (2611.7747 without restraints) Performing minimization step: 4397. Total energy = 2616.8895 kcal/mol (2611.5686 without restraints) Performing minimization step: 4398. Total energy = 2616.6838 kcal/mol (2611.3625 without restraints) Performing minimization step: 4399. Total energy = 2616.4780 kcal/mol (2611.1564 without restraints) Performing minimization step: 4400. Total energy = 2616.2726 kcal/mol (2610.9505 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 2616.0669 kcal/mol (2610.7444 without restraints) Performing minimization step: 4402. Total energy = 2615.8615 kcal/mol (2610.5389 without restraints) Performing minimization step: 4403. Total energy = 2615.6568 kcal/mol (2610.3336 without restraints) Performing minimization step: 4404. Total energy = 2615.4513 kcal/mol (2610.1276 without restraints) Performing minimization step: 4405. Total energy = 2615.2456 kcal/mol (2609.9215 without restraints) Performing minimization step: 4406. Total energy = 2615.0401 kcal/mol (2609.7157 without restraints) Performing minimization step: 4407. Total energy = 2614.8347 kcal/mol (2609.5098 without restraints) Performing minimization step: 4408. Total energy = 2614.6293 kcal/mol (2609.3041 without restraints) Performing minimization step: 4409. Total energy = 2614.4240 kcal/mol (2609.0984 without restraints) Performing minimization step: 4410. Total energy = 2614.2191 kcal/mol (2608.8932 without restraints) Performing minimization step: 4411. Total energy = 2614.0144 kcal/mol (2608.6880 without restraints) Performing minimization step: 4412. Total energy = 2613.8095 kcal/mol (2608.4827 without restraints) Performing minimization step: 4413. Total energy = 2613.6046 kcal/mol (2608.2774 without restraints) Performing minimization step: 4414. Total energy = 2613.3998 kcal/mol (2608.0723 without restraints) Performing minimization step: 4415. Total energy = 2613.1950 kcal/mol (2607.8671 without restraints) Performing minimization step: 4416. Total energy = 2612.9902 kcal/mol (2607.6619 without restraints) Performing minimization step: 4417. Total energy = 2612.7855 kcal/mol (2607.4568 without restraints) Performing minimization step: 4418. Total energy = 2612.5808 kcal/mol (2607.2517 without restraints) Performing minimization step: 4419. Total energy = 2612.3764 kcal/mol (2607.0468 without restraints) Performing minimization step: 4420. Total energy = 2612.1722 kcal/mol (2606.8423 without restraints) Performing minimization step: 4421. Total energy = 2611.9677 kcal/mol (2606.6374 without restraints) Performing minimization step: 4422. Total energy = 2611.7634 kcal/mol (2606.4327 without restraints) Performing minimization step: 4423. Total energy = 2611.5593 kcal/mol (2606.2282 without restraints) Performing minimization step: 4424. Total energy = 2611.3549 kcal/mol (2606.0235 without restraints) Performing minimization step: 4425. Total energy = 2611.1509 kcal/mol (2605.8191 without restraints) Performing minimization step: 4426. Total energy = 2610.9465 kcal/mol (2605.6143 without restraints) Performing minimization step: 4427. Total energy = 2610.7423 kcal/mol (2605.4096 without restraints) Performing minimization step: 4428. Total energy = 2610.5382 kcal/mol (2605.2052 without restraints) Performing minimization step: 4429. Total energy = 2610.3342 kcal/mol (2605.0008 without restraints) Performing minimization step: 4430. Total energy = 2610.1303 kcal/mol (2604.7965 without restraints) Performing minimization step: 4431. Total energy = 2609.9266 kcal/mol (2604.5924 without restraints) Performing minimization step: 4432. Total energy = 2609.7228 kcal/mol (2604.3882 without restraints) Performing minimization step: 4433. Total energy = 2609.5190 kcal/mol (2604.1840 without restraints) Performing minimization step: 4434. Total energy = 2609.3151 kcal/mol (2603.9797 without restraints) Performing minimization step: 4435. Total energy = 2609.1117 kcal/mol (2603.7759 without restraints) Performing minimization step: 4436. Total energy = 2608.9083 kcal/mol (2603.5721 without restraints) Performing minimization step: 4437. Total energy = 2608.7047 kcal/mol (2603.3681 without restraints) Performing minimization step: 4438. Total energy = 2608.5009 kcal/mol (2603.1640 without restraints) Performing minimization step: 4439. Total energy = 2608.2979 kcal/mol (2602.9605 without restraints) Performing minimization step: 4440. Total energy = 2608.0947 kcal/mol (2602.7570 without restraints) Performing minimization step: 4441. Total energy = 2607.8918 kcal/mol (2602.5538 without restraints) Performing minimization step: 4442. Total energy = 2607.6885 kcal/mol (2602.3501 without restraints) Performing minimization step: 4443. Total energy = 2607.4852 kcal/mol (2602.1463 without restraints) Performing minimization step: 4444. Total energy = 2607.2826 kcal/mol (2601.9434 without restraints) Performing minimization step: 4445. Total energy = 2607.0794 kcal/mol (2601.7398 without restraints) Performing minimization step: 4446. Total energy = 2606.8763 kcal/mol (2601.5362 without restraints) Performing minimization step: 4447. Total energy = 2606.6737 kcal/mol (2601.3333 without restraints) Performing minimization step: 4448. Total energy = 2606.4706 kcal/mol (2601.1298 without restraints) Performing minimization step: 4449. Total energy = 2606.2680 kcal/mol (2600.9269 without restraints) Performing minimization step: 4450. Total energy = 2606.0656 kcal/mol (2600.7240 without restraints) Performing minimization step: 4451. Total energy = 2605.8626 kcal/mol (2600.5206 without restraints) Performing minimization step: 4452. Total energy = 2605.6599 kcal/mol (2600.3176 without restraints) Performing minimization step: 4453. Total energy = 2605.4575 kcal/mol (2600.1148 without restraints) Performing minimization step: 4454. Total energy = 2605.2552 kcal/mol (2599.9122 without restraints) Performing minimization step: 4455. Total energy = 2605.0523 kcal/mol (2599.7088 without restraints) Performing minimization step: 4456. Total energy = 2604.8498 kcal/mol (2599.5061 without restraints) Performing minimization step: 4457. Total energy = 2604.6475 kcal/mol (2599.3032 without restraints) Performing minimization step: 4458. Total energy = 2604.4451 kcal/mol (2599.1004 without restraints) Performing minimization step: 4459. Total energy = 2604.2426 kcal/mol (2598.8975 without restraints) Performing minimization step: 4460. Total energy = 2604.0401 kcal/mol (2598.6948 without restraints) Performing minimization step: 4461. Total energy = 2603.8377 kcal/mol (2598.4919 without restraints) Performing minimization step: 4462. Total energy = 2603.6353 kcal/mol (2598.2890 without restraints) Performing minimization step: 4463. Total energy = 2603.4329 kcal/mol (2598.0862 without restraints) Performing minimization step: 4464. Total energy = 2603.2307 kcal/mol (2597.8837 without restraints) Performing minimization step: 4465. Total energy = 2603.0282 kcal/mol (2597.6807 without restraints) Performing minimization step: 4466. Total energy = 2602.8263 kcal/mol (2597.4785 without restraints) Performing minimization step: 4467. Total energy = 2602.6242 kcal/mol (2597.2761 without restraints) Performing minimization step: 4468. Total energy = 2602.4224 kcal/mol (2597.0739 without restraints) Performing minimization step: 4469. Total energy = 2602.2204 kcal/mol (2596.8715 without restraints) Performing minimization step: 4470. Total energy = 2602.0184 kcal/mol (2596.6691 without restraints) Performing minimization step: 4471. Total energy = 2601.8163 kcal/mol (2596.4666 without restraints) Performing minimization step: 4472. Total energy = 2601.6142 kcal/mol (2596.2641 without restraints) Performing minimization step: 4473. Total energy = 2601.4123 kcal/mol (2596.0619 without restraints) Performing minimization step: 4474. Total energy = 2601.2102 kcal/mol (2595.8594 without restraints) Performing minimization step: 4475. Total energy = 2601.0082 kcal/mol (2595.6570 without restraints) Performing minimization step: 4476. Total energy = 2600.8068 kcal/mol (2595.4552 without restraints) Performing minimization step: 4477. Total energy = 2600.6048 kcal/mol (2595.2528 without restraints) Performing minimization step: 4478. Total energy = 2600.4029 kcal/mol (2595.0505 without restraints) Performing minimization step: 4479. Total energy = 2600.2010 kcal/mol (2594.8482 without restraints) Performing minimization step: 4480. Total energy = 2599.9994 kcal/mol (2594.6462 without restraints) Performing minimization step: 4481. Total energy = 2599.7977 kcal/mol (2594.4441 without restraints) Performing minimization step: 4482. Total energy = 2599.5962 kcal/mol (2594.2423 without restraints) Performing minimization step: 4483. Total energy = 2599.3943 kcal/mol (2594.0401 without restraints) Performing minimization step: 4484. Total energy = 2599.1926 kcal/mol (2593.8379 without restraints) Performing minimization step: 4485. Total energy = 2598.9909 kcal/mol (2593.6357 without restraints) Performing minimization step: 4486. Total energy = 2598.7891 kcal/mol (2593.4336 without restraints) Performing minimization step: 4487. Total energy = 2598.5875 kcal/mol (2593.2318 without restraints) Performing minimization step: 4488. Total energy = 2598.3859 kcal/mol (2593.0297 without restraints) Performing minimization step: 4489. Total energy = 2598.1845 kcal/mol (2592.8280 without restraints) Performing minimization step: 4490. Total energy = 2597.9829 kcal/mol (2592.6259 without restraints) Performing minimization step: 4491. Total energy = 2597.7810 kcal/mol (2592.4236 without restraints) Performing minimization step: 4492. Total energy = 2597.5795 kcal/mol (2592.2216 without restraints) Performing minimization step: 4493. Total energy = 2597.3780 kcal/mol (2592.0198 without restraints) Performing minimization step: 4494. Total energy = 2597.1763 kcal/mol (2591.8177 without restraints) Performing minimization step: 4495. Total energy = 2596.9744 kcal/mol (2591.6154 without restraints) Performing minimization step: 4496. Total energy = 2596.7727 kcal/mol (2591.4134 without restraints) Performing minimization step: 4497. Total energy = 2596.5712 kcal/mol (2591.2115 without restraints) Performing minimization step: 4498. Total energy = 2596.3695 kcal/mol (2591.0094 without restraints) Performing minimization step: 4499. Total energy = 2596.1676 kcal/mol (2590.8071 without restraints) Performing minimization step: 4500. Total energy = 2595.9659 kcal/mol (2590.6050 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 2595.7642 kcal/mol (2590.4029 without restraints) Performing minimization step: 4502. Total energy = 2595.5627 kcal/mol (2590.2010 without restraints) Performing minimization step: 4503. Total energy = 2595.3609 kcal/mol (2589.9989 without restraints) Performing minimization step: 4504. Total energy = 2595.1594 kcal/mol (2589.7971 without restraints) Performing minimization step: 4505. Total energy = 2594.9579 kcal/mol (2589.5952 without restraints) Performing minimization step: 4506. Total energy = 2594.7560 kcal/mol (2589.3928 without restraints) Performing minimization step: 4507. Total energy = 2594.5543 kcal/mol (2589.1908 without restraints) Performing minimization step: 4508. Total energy = 2594.3522 kcal/mol (2588.9881 without restraints) Performing minimization step: 4509. Total energy = 2594.1505 kcal/mol (2588.7861 without restraints) Performing minimization step: 4510. Total energy = 2593.9486 kcal/mol (2588.5838 without restraints) Performing minimization step: 4511. Total energy = 2593.7469 kcal/mol (2588.3817 without restraints) Performing minimization step: 4512. Total energy = 2593.5453 kcal/mol (2588.1798 without restraints) Performing minimization step: 4513. Total energy = 2593.3434 kcal/mol (2587.9775 without restraints) Performing minimization step: 4514. Total energy = 2593.1415 kcal/mol (2587.7753 without restraints) Performing minimization step: 4515. Total energy = 2592.9397 kcal/mol (2587.5730 without restraints) Performing minimization step: 4516. Total energy = 2592.7375 kcal/mol (2587.3704 without restraints) Performing minimization step: 4517. Total energy = 2592.5355 kcal/mol (2587.1683 without restraints) Performing minimization step: 4518. Total energy = 2592.3336 kcal/mol (2586.9656 without restraints) Performing minimization step: 4519. Total energy = 2592.1311 kcal/mol (2586.7628 without restraints) Performing minimization step: 4520. Total energy = 2591.9287 kcal/mol (2586.5603 without restraints) Performing minimization step: 4521. Total energy = 2591.7267 kcal/mol (2586.3576 without restraints) Performing minimization step: 4522. Total energy = 2591.5240 kcal/mol (2586.1544 without restraints) Performing minimization step: 4523. Total energy = 2591.3211 kcal/mol (2585.9512 without restraints) Performing minimization step: 4524. Total energy = 2591.1177 kcal/mol (2585.7475 without restraints) Performing minimization step: 4525. Total energy = 2590.9151 kcal/mol (2585.5445 without restraints) Performing minimization step: 4526. Total energy = 2590.7122 kcal/mol (2585.3413 without restraints) Performing minimization step: 4527. Total energy = 2590.5096 kcal/mol (2585.1383 without restraints) Performing minimization step: 4528. Total energy = 2590.3066 kcal/mol (2584.9349 without restraints) Performing minimization step: 4529. Total energy = 2590.1035 kcal/mol (2584.7313 without restraints) Performing minimization step: 4530. Total energy = 2589.9004 kcal/mol (2584.5279 without restraints) Performing minimization step: 4531. Total energy = 2589.6970 kcal/mol (2584.3243 without restraints) Performing minimization step: 4532. Total energy = 2589.4938 kcal/mol (2584.1206 without restraints) Performing minimization step: 4533. Total energy = 2589.2904 kcal/mol (2583.9167 without restraints) Performing minimization step: 4534. Total energy = 2589.0867 kcal/mol (2583.7127 without restraints) Performing minimization step: 4535. Total energy = 2588.8826 kcal/mol (2583.5081 without restraints) Performing minimization step: 4536. Total energy = 2588.6784 kcal/mol (2583.3036 without restraints) Performing minimization step: 4537. Total energy = 2588.4744 kcal/mol (2583.0993 without restraints) Performing minimization step: 4538. Total energy = 2588.2701 kcal/mol (2582.8945 without restraints) Performing minimization step: 4539. Total energy = 2588.0655 kcal/mol (2582.6895 without restraints) Performing minimization step: 4540. Total energy = 2587.8607 kcal/mol (2582.4843 without restraints) Performing minimization step: 4541. Total energy = 2587.6558 kcal/mol (2582.2791 without restraints) Performing minimization step: 4542. Total energy = 2587.4507 kcal/mol (2582.0735 without restraints) Performing minimization step: 4543. Total energy = 2587.2448 kcal/mol (2581.8673 without restraints) Performing minimization step: 4544. Total energy = 2587.0392 kcal/mol (2581.6612 without restraints) Performing minimization step: 4545. Total energy = 2586.8338 kcal/mol (2581.4555 without restraints) Performing minimization step: 4546. Total energy = 2586.6281 kcal/mol (2581.2495 without restraints) Performing minimization step: 4547. Total energy = 2586.4225 kcal/mol (2581.0433 without restraints) Performing minimization step: 4548. Total energy = 2586.2163 kcal/mol (2580.8369 without restraints) Performing minimization step: 4549. Total energy = 2586.0099 kcal/mol (2580.6298 without restraints) Performing minimization step: 4550. Total energy = 2585.8023 kcal/mol (2580.4219 without restraints) Performing minimization step: 4551. Total energy = 2585.5945 kcal/mol (2580.2137 without restraints) Performing minimization step: 4552. Total energy = 2585.3868 kcal/mol (2580.0057 without restraints) Performing minimization step: 4553. Total energy = 2585.1789 kcal/mol (2579.7975 without restraints) Performing minimization step: 4554. Total energy = 2584.9705 kcal/mol (2579.5885 without restraints) Performing minimization step: 4555. Total energy = 2584.7614 kcal/mol (2579.3790 without restraints) Performing minimization step: 4556. Total energy = 2584.5523 kcal/mol (2579.1697 without restraints) Performing minimization step: 4557. Total energy = 2584.3427 kcal/mol (2578.9595 without restraints) Performing minimization step: 4558. Total energy = 2584.1326 kcal/mol (2578.7490 without restraints) Performing minimization step: 4559. Total energy = 2583.9222 kcal/mol (2578.5382 without restraints) Performing minimization step: 4560. Total energy = 2583.7112 kcal/mol (2578.3267 without restraints) Performing minimization step: 4561. Total energy = 2583.4996 kcal/mol (2578.1148 without restraints) Performing minimization step: 4562. Total energy = 2583.2878 kcal/mol (2577.9025 without restraints) Performing minimization step: 4563. Total energy = 2583.0752 kcal/mol (2577.6895 without restraints) Performing minimization step: 4564. Total energy = 2582.8621 kcal/mol (2577.4760 without restraints) Performing minimization step: 4565. Total energy = 2582.6486 kcal/mol (2577.2621 without restraints) Performing minimization step: 4566. Total energy = 2582.4342 kcal/mol (2577.0473 without restraints) Performing minimization step: 4567. Total energy = 2582.2192 kcal/mol (2576.8318 without restraints) Performing minimization step: 4568. Total energy = 2582.0038 kcal/mol (2576.6160 without restraints) Performing minimization step: 4569. Total energy = 2581.7875 kcal/mol (2576.3993 without restraints) Performing minimization step: 4570. Total energy = 2581.5705 kcal/mol (2576.1819 without restraints) Performing minimization step: 4571. Total energy = 2581.3529 kcal/mol (2575.9640 without restraints) Performing minimization step: 4572. Total energy = 2581.1349 kcal/mol (2575.7454 without restraints) Performing minimization step: 4573. Total energy = 2580.9154 kcal/mol (2575.5255 without restraints) Performing minimization step: 4574. Total energy = 2580.6953 kcal/mol (2575.3049 without restraints) Performing minimization step: 4575. Total energy = 2580.4746 kcal/mol (2575.0837 without restraints) Performing minimization step: 4576. Total energy = 2580.2525 kcal/mol (2574.8613 without restraints) Performing minimization step: 4577. Total energy = 2580.0298 kcal/mol (2574.6380 without restraints) Performing minimization step: 4578. Total energy = 2579.8065 kcal/mol (2574.4143 without restraints) Performing minimization step: 4579. Total energy = 2579.5815 kcal/mol (2574.1889 without restraints) Performing minimization step: 4580. Total energy = 2579.3553 kcal/mol (2573.9622 without restraints) Performing minimization step: 4581. Total energy = 2579.1281 kcal/mol (2573.7346 without restraints) Performing minimization step: 4582. Total energy = 2578.9003 kcal/mol (2573.5063 without restraints) Performing minimization step: 4583. Total energy = 2578.6709 kcal/mol (2573.2764 without restraints) Performing minimization step: 4584. Total energy = 2578.4401 kcal/mol (2573.0451 without restraints) Performing minimization step: 4585. Total energy = 2578.2080 kcal/mol (2572.8125 without restraints) Performing minimization step: 4586. Total energy = 2577.9745 kcal/mol (2572.5786 without restraints) Performing minimization step: 4587. Total energy = 2577.7397 kcal/mol (2572.3430 without restraints) Performing minimization step: 4588. Total energy = 2577.5038 kcal/mol (2572.1069 without restraints) Performing minimization step: 4589. Total energy = 2577.2661 kcal/mol (2571.8688 without restraints) Performing minimization step: 4590. Total energy = 2577.0268 kcal/mol (2571.6290 without restraints) Performing minimization step: 4591. Total energy = 2576.7859 kcal/mol (2571.3875 without restraints) Performing minimization step: 4592. Total energy = 2576.5435 kcal/mol (2571.1446 without restraints) Performing minimization step: 4593. Total energy = 2576.2989 kcal/mol (2570.8995 without restraints) Performing minimization step: 4594. Total energy = 2576.0527 kcal/mol (2570.6528 without restraints) Performing minimization step: 4595. Total energy = 2575.8047 kcal/mol (2570.4043 without restraints) Performing minimization step: 4596. Total energy = 2575.5548 kcal/mol (2570.1539 without restraints) Performing minimization step: 4597. Total energy = 2575.3031 kcal/mol (2569.9017 without restraints) Performing minimization step: 4598. Total energy = 2575.0492 kcal/mol (2569.6473 without restraints) Performing minimization step: 4599. Total energy = 2574.7933 kcal/mol (2569.3908 without restraints) Performing minimization step: 4600. Total energy = 2574.5352 kcal/mol (2569.1321 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 2574.2751 kcal/mol (2568.8715 without restraints) Performing minimization step: 4602. Total energy = 2574.0125 kcal/mol (2568.6084 without restraints) Performing minimization step: 4603. Total energy = 2573.7481 kcal/mol (2568.3435 without restraints) Performing minimization step: 4604. Total energy = 2573.4809 kcal/mol (2568.0757 without restraints) Performing minimization step: 4605. Total energy = 2573.2110 kcal/mol (2567.8052 without restraints) Performing minimization step: 4606. Total energy = 2572.9389 kcal/mol (2567.5326 without restraints) Performing minimization step: 4607. Total energy = 2572.6643 kcal/mol (2567.2573 without restraints) Performing minimization step: 4608. Total energy = 2572.3871 kcal/mol (2566.9795 without restraints) Performing minimization step: 4609. Total energy = 2572.1070 kcal/mol (2566.6989 without restraints) Performing minimization step: 4610. Total energy = 2571.8244 kcal/mol (2566.4157 without restraints) Performing minimization step: 4611. Total energy = 2571.5390 kcal/mol (2566.1296 without restraints) Performing minimization step: 4612. Total energy = 2571.2507 kcal/mol (2565.8408 without restraints) Performing minimization step: 4613. Total energy = 2570.9595 kcal/mol (2565.5488 without restraints) Performing minimization step: 4614. Total energy = 2570.6650 kcal/mol (2565.2540 without restraints) Performing minimization step: 4615. Total energy = 2570.3680 kcal/mol (2564.9564 without restraints) Performing minimization step: 4616. Total energy = 2570.0678 kcal/mol (2564.6556 without restraints) Performing minimization step: 4617. Total energy = 2569.7642 kcal/mol (2564.3512 without restraints) Performing minimization step: 4618. Total energy = 2569.4575 kcal/mol (2564.0441 without restraints) Performing minimization step: 4619. Total energy = 2569.1488 kcal/mol (2563.7347 without restraints) Performing minimization step: 4620. Total energy = 2568.8361 kcal/mol (2563.4214 without restraints) Performing minimization step: 4621. Total energy = 2568.5201 kcal/mol (2563.1048 without restraints) Performing minimization step: 4622. Total energy = 2568.2009 kcal/mol (2562.7850 without restraints) Performing minimization step: 4623. Total energy = 2567.8785 kcal/mol (2562.4619 without restraints) Performing minimization step: 4624. Total energy = 2567.5527 kcal/mol (2562.1355 without restraints) Performing minimization step: 4625. Total energy = 2567.2236 kcal/mol (2561.8058 without restraints) Performing minimization step: 4626. Total energy = 2566.8911 kcal/mol (2561.4727 without restraints) Performing minimization step: 4627. Total energy = 2566.5561 kcal/mol (2561.1371 without restraints) Performing minimization step: 4628. Total energy = 2566.2170 kcal/mol (2560.7973 without restraints) Performing minimization step: 4629. Total energy = 2565.8744 kcal/mol (2560.4542 without restraints) Performing minimization step: 4630. Total energy = 2565.5285 kcal/mol (2560.1077 without restraints) Performing minimization step: 4631. Total energy = 2565.1795 kcal/mol (2559.7580 without restraints) Performing minimization step: 4632. Total energy = 2564.8266 kcal/mol (2559.4045 without restraints) Performing minimization step: 4633. Total energy = 2564.4705 kcal/mol (2559.0479 without restraints) Performing minimization step: 4634. Total energy = 2564.1114 kcal/mol (2558.6882 without restraints) Performing minimization step: 4635. Total energy = 2563.7486 kcal/mol (2558.3248 without restraints) Performing minimization step: 4636. Total energy = 2563.3826 kcal/mol (2557.9581 without restraints) Performing minimization step: 4637. Total energy = 2563.0131 kcal/mol (2557.5881 without restraints) Performing minimization step: 4638. Total energy = 2562.6404 kcal/mol (2557.2148 without restraints) Performing minimization step: 4639. Total energy = 2562.2643 kcal/mol (2556.8380 without restraints) Performing minimization step: 4640. Total energy = 2561.8849 kcal/mol (2556.4580 without restraints) Performing minimization step: 4641. Total energy = 2561.5024 kcal/mol (2556.0751 without restraints) Performing minimization step: 4642. Total energy = 2561.1165 kcal/mol (2555.6885 without restraints) Performing minimization step: 4643. Total energy = 2560.7278 kcal/mol (2555.2994 without restraints) Performing minimization step: 4644. Total energy = 2560.3358 kcal/mol (2554.9068 without restraints) Performing minimization step: 4645. Total energy = 2559.9411 kcal/mol (2554.5115 without restraints) Performing minimization step: 4646. Total energy = 2559.5431 kcal/mol (2554.1131 without restraints) Performing minimization step: 4647. Total energy = 2559.1421 kcal/mol (2553.7115 without restraints) Performing minimization step: 4648. Total energy = 2558.7383 kcal/mol (2553.3072 without restraints) Performing minimization step: 4649. Total energy = 2558.3320 kcal/mol (2552.9004 without restraints) Performing minimization step: 4650. Total energy = 2557.9226 kcal/mol (2552.4905 without restraints) Performing minimization step: 4651. Total energy = 2557.5105 kcal/mol (2552.0778 without restraints) Performing minimization step: 4652. Total energy = 2557.0956 kcal/mol (2551.6625 without restraints) Performing minimization step: 4653. Total energy = 2556.6788 kcal/mol (2551.2452 without restraints) Performing minimization step: 4654. Total energy = 2556.2590 kcal/mol (2550.8249 without restraints) Performing minimization step: 4655. Total energy = 2555.8365 kcal/mol (2550.4020 without restraints) Performing minimization step: 4656. Total energy = 2555.4118 kcal/mol (2549.9769 without restraints) Performing minimization step: 4657. Total energy = 2554.9845 kcal/mol (2549.5492 without restraints) Performing minimization step: 4658. Total energy = 2554.5555 kcal/mol (2549.1199 without restraints) Performing minimization step: 4659. Total energy = 2554.1244 kcal/mol (2548.6883 without restraints) Performing minimization step: 4660. Total energy = 2553.6911 kcal/mol (2548.2545 without restraints) Performing minimization step: 4661. Total energy = 2553.2558 kcal/mol (2547.8188 without restraints) Performing minimization step: 4662. Total energy = 2552.8185 kcal/mol (2547.3812 without restraints) Performing minimization step: 4663. Total energy = 2552.3794 kcal/mol (2546.9415 without restraints) Performing minimization step: 4664. Total energy = 2551.9386 kcal/mol (2546.5006 without restraints) Performing minimization step: 4665. Total energy = 2551.4962 kcal/mol (2546.0578 without restraints) Performing minimization step: 4666. Total energy = 2551.0523 kcal/mol (2545.6135 without restraints) Performing minimization step: 4667. Total energy = 2550.6068 kcal/mol (2545.1677 without restraints) Performing minimization step: 4668. Total energy = 2550.1600 kcal/mol (2544.7206 without restraints) Performing minimization step: 4669. Total energy = 2549.7120 kcal/mol (2544.2723 without restraints) Performing minimization step: 4670. Total energy = 2549.2627 kcal/mol (2543.8227 without restraints) Performing minimization step: 4671. Total energy = 2548.8124 kcal/mol (2543.3720 without restraints) Performing minimization step: 4672. Total energy = 2548.3609 kcal/mol (2542.9204 without restraints) Performing minimization step: 4673. Total energy = 2547.9086 kcal/mol (2542.4678 without restraints) Performing minimization step: 4674. Total energy = 2547.4555 kcal/mol (2542.0143 without restraints) Performing minimization step: 4675. Total energy = 2547.0019 kcal/mol (2541.5605 without restraints) Performing minimization step: 4676. Total energy = 2546.5473 kcal/mol (2541.1058 without restraints) Performing minimization step: 4677. Total energy = 2546.0924 kcal/mol (2540.6506 without restraints) Performing minimization step: 4678. Total energy = 2545.6368 kcal/mol (2540.1948 without restraints) Performing minimization step: 4679. Total energy = 2545.1807 kcal/mol (2539.7385 without restraints) Performing minimization step: 4680. Total energy = 2544.7245 kcal/mol (2539.2819 without restraints) Performing minimization step: 4681. Total energy = 2544.2678 kcal/mol (2538.8254 without restraints) Performing minimization step: 4682. Total energy = 2543.8108 kcal/mol (2538.3681 without restraints) Performing minimization step: 4683. Total energy = 2543.3542 kcal/mol (2537.9113 without restraints) Performing minimization step: 4684. Total energy = 2542.8974 kcal/mol (2537.4544 without restraints) Performing minimization step: 4685. Total energy = 2542.4410 kcal/mol (2536.9978 without restraints) Performing minimization step: 4686. Total energy = 2541.9846 kcal/mol (2536.5413 without restraints) Performing minimization step: 4687. Total energy = 2541.5282 kcal/mol (2536.0847 without restraints) Performing minimization step: 4688. Total energy = 2541.0723 kcal/mol (2535.6288 without restraints) Performing minimization step: 4689. Total energy = 2540.6169 kcal/mol (2535.1733 without restraints) Performing minimization step: 4690. Total energy = 2540.1620 kcal/mol (2534.7183 without restraints) Performing minimization step: 4691. Total energy = 2539.7079 kcal/mol (2534.2641 without restraints) Performing minimization step: 4692. Total energy = 2539.2542 kcal/mol (2533.8103 without restraints) Performing minimization step: 4693. Total energy = 2538.8014 kcal/mol (2533.3574 without restraints) Performing minimization step: 4694. Total energy = 2538.3492 kcal/mol (2532.9052 without restraints) Performing minimization step: 4695. Total energy = 2537.8980 kcal/mol (2532.4539 without restraints) Performing minimization step: 4696. Total energy = 2537.4475 kcal/mol (2532.0034 without restraints) Performing minimization step: 4697. Total energy = 2536.9984 kcal/mol (2531.5542 without restraints) Performing minimization step: 4698. Total energy = 2536.5500 kcal/mol (2531.1058 without restraints) Performing minimization step: 4699. Total energy = 2536.1026 kcal/mol (2530.6584 without restraints) Performing minimization step: 4700. Total energy = 2535.6566 kcal/mol (2530.2124 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 2535.2118 kcal/mol (2529.7676 without restraints) Performing minimization step: 4702. Total energy = 2534.7683 kcal/mol (2529.3241 without restraints) Performing minimization step: 4703. Total energy = 2534.3261 kcal/mol (2528.8819 without restraints) Performing minimization step: 4704. Total energy = 2533.8855 kcal/mol (2528.4412 without restraints) Performing minimization step: 4705. Total energy = 2533.4468 kcal/mol (2528.0026 without restraints) Performing minimization step: 4706. Total energy = 2533.0089 kcal/mol (2527.5647 without restraints) Performing minimization step: 4707. Total energy = 2532.5726 kcal/mol (2527.1285 without restraints) Performing minimization step: 4708. Total energy = 2532.1382 kcal/mol (2526.6941 without restraints) Performing minimization step: 4709. Total energy = 2531.7052 kcal/mol (2526.2611 without restraints) Performing minimization step: 4710. Total energy = 2531.2739 kcal/mol (2525.8298 without restraints) Performing minimization step: 4711. Total energy = 2530.8444 kcal/mol (2525.4003 without restraints) Performing minimization step: 4712. Total energy = 2530.4166 kcal/mol (2524.9727 without restraints) Performing minimization step: 4713. Total energy = 2529.9912 kcal/mol (2524.5473 without restraints) Performing minimization step: 4714. Total energy = 2529.5671 kcal/mol (2524.1232 without restraints) Performing minimization step: 4715. Total energy = 2529.1453 kcal/mol (2523.7015 without restraints) Performing minimization step: 4716. Total energy = 2528.7250 kcal/mol (2523.2813 without restraints) Performing minimization step: 4717. Total energy = 2528.3068 kcal/mol (2522.8632 without restraints) Performing minimization step: 4718. Total energy = 2527.8907 kcal/mol (2522.4472 without restraints) Performing minimization step: 4719. Total energy = 2527.4765 kcal/mol (2522.0328 without restraints) Performing minimization step: 4720. Total energy = 2527.0641 kcal/mol (2521.6207 without restraints) Performing minimization step: 4721. Total energy = 2526.6540 kcal/mol (2521.2106 without restraints) Performing minimization step: 4722. Total energy = 2526.2460 kcal/mol (2520.8026 without restraints) Performing minimization step: 4723. Total energy = 2525.8400 kcal/mol (2520.3968 without restraints) Performing minimization step: 4724. Total energy = 2525.4364 kcal/mol (2519.9931 without restraints) Performing minimization step: 4725. Total energy = 2525.0347 kcal/mol (2519.5916 without restraints) Performing minimization step: 4726. Total energy = 2524.6352 kcal/mol (2519.1923 without restraints) Performing minimization step: 4727. Total energy = 2524.2380 kcal/mol (2518.7951 without restraints) Performing minimization step: 4728. Total energy = 2523.8431 kcal/mol (2518.4003 without restraints) Performing minimization step: 4729. Total energy = 2523.4505 kcal/mol (2518.0078 without restraints) Performing minimization step: 4730. Total energy = 2523.0601 kcal/mol (2517.6174 without restraints) Performing minimization step: 4731. Total energy = 2522.6720 kcal/mol (2517.2294 without restraints) Performing minimization step: 4732. Total energy = 2522.2859 kcal/mol (2516.8435 without restraints) Performing minimization step: 4733. Total energy = 2521.9024 kcal/mol (2516.4600 without restraints) Performing minimization step: 4734. Total energy = 2521.5211 kcal/mol (2516.0788 without restraints) Performing minimization step: 4735. Total energy = 2521.1422 kcal/mol (2515.7000 without restraints) Performing minimization step: 4736. Total energy = 2520.7655 kcal/mol (2515.3234 without restraints) Performing minimization step: 4737. Total energy = 2520.3911 kcal/mol (2514.9490 without restraints) Performing minimization step: 4738. Total energy = 2520.0189 kcal/mol (2514.5770 without restraints) Performing minimization step: 4739. Total energy = 2519.6493 kcal/mol (2514.2075 without restraints) Performing minimization step: 4740. Total energy = 2519.2821 kcal/mol (2513.8404 without restraints) Performing minimization step: 4741. Total energy = 2518.9173 kcal/mol (2513.4756 without restraints) Performing minimization step: 4742. Total energy = 2518.5548 kcal/mol (2513.1132 without restraints) Performing minimization step: 4743. Total energy = 2518.1946 kcal/mol (2512.7531 without restraints) Performing minimization step: 4744. Total energy = 2517.8374 kcal/mol (2512.3960 without restraints) Performing minimization step: 4745. Total energy = 2517.4820 kcal/mol (2512.0407 without restraints) Performing minimization step: 4746. Total energy = 2517.1289 kcal/mol (2511.6877 without restraints) Performing minimization step: 4747. Total energy = 2516.7782 kcal/mol (2511.3371 without restraints) Performing minimization step: 4748. Total energy = 2516.4299 kcal/mol (2510.9888 without restraints) Performing minimization step: 4749. Total energy = 2516.0839 kcal/mol (2510.6428 without restraints) Performing minimization step: 4750. Total energy = 2515.7402 kcal/mol (2510.2992 without restraints) Performing minimization step: 4751. Total energy = 2515.3988 kcal/mol (2509.9579 without restraints) Performing minimization step: 4752. Total energy = 2515.0598 kcal/mol (2509.6189 without restraints) Performing minimization step: 4753. Total energy = 2514.7233 kcal/mol (2509.2825 without restraints) Performing minimization step: 4754. Total energy = 2514.3885 kcal/mol (2508.9478 without restraints) Performing minimization step: 4755. Total energy = 2514.0564 kcal/mol (2508.6157 without restraints) Performing minimization step: 4756. Total energy = 2513.7267 kcal/mol (2508.2862 without restraints) Performing minimization step: 4757. Total energy = 2513.3994 kcal/mol (2507.9590 without restraints) Performing minimization step: 4758. Total energy = 2513.0741 kcal/mol (2507.6337 without restraints) Performing minimization step: 4759. Total energy = 2512.7510 kcal/mol (2507.3106 without restraints) Performing minimization step: 4760. Total energy = 2512.4301 kcal/mol (2506.9897 without restraints) Performing minimization step: 4761. Total energy = 2512.1113 kcal/mol (2506.6710 without restraints) Performing minimization step: 4762. Total energy = 2511.7950 kcal/mol (2506.3547 without restraints) Performing minimization step: 4763. Total energy = 2511.4807 kcal/mol (2506.0404 without restraints) Performing minimization step: 4764. Total energy = 2511.1687 kcal/mol (2505.7285 without restraints) Performing minimization step: 4765. Total energy = 2510.8587 kcal/mol (2505.4186 without restraints) Performing minimization step: 4766. Total energy = 2510.5509 kcal/mol (2505.1107 without restraints) Performing minimization step: 4767. Total energy = 2510.2450 kcal/mol (2504.8048 without restraints) Performing minimization step: 4768. Total energy = 2509.9412 kcal/mol (2504.5011 without restraints) Performing minimization step: 4769. Total energy = 2509.6396 kcal/mol (2504.1995 without restraints) Performing minimization step: 4770. Total energy = 2509.3405 kcal/mol (2503.9004 without restraints) Performing minimization step: 4771. Total energy = 2509.0431 kcal/mol (2503.6031 without restraints) Performing minimization step: 4772. Total energy = 2508.7474 kcal/mol (2503.3071 without restraints) Performing minimization step: 4773. Total energy = 2508.4535 kcal/mol (2503.0134 without restraints) Performing minimization step: 4774. Total energy = 2508.1619 kcal/mol (2502.7217 without restraints) Performing minimization step: 4775. Total energy = 2507.8727 kcal/mol (2502.4325 without restraints) Performing minimization step: 4776. Total energy = 2507.5850 kcal/mol (2502.1449 without restraints) Performing minimization step: 4777. Total energy = 2507.2991 kcal/mol (2501.8589 without restraints) Performing minimization step: 4778. Total energy = 2507.0155 kcal/mol (2501.5755 without restraints) Performing minimization step: 4779. Total energy = 2506.7338 kcal/mol (2501.2936 without restraints) Performing minimization step: 4780. Total energy = 2506.4536 kcal/mol (2501.0133 without restraints) Performing minimization step: 4781. Total energy = 2506.1750 kcal/mol (2500.7347 without restraints) Performing minimization step: 4782. Total energy = 2505.8987 kcal/mol (2500.4585 without restraints) Performing minimization step: 4783. Total energy = 2505.6240 kcal/mol (2500.1836 without restraints) Performing minimization step: 4784. Total energy = 2505.3508 kcal/mol (2499.9104 without restraints) Performing minimization step: 4785. Total energy = 2505.0796 kcal/mol (2499.6391 without restraints) Performing minimization step: 4786. Total energy = 2504.8099 kcal/mol (2499.3693 without restraints) Performing minimization step: 4787. Total energy = 2504.5418 kcal/mol (2499.1012 without restraints) Performing minimization step: 4788. Total energy = 2504.2756 kcal/mol (2498.8350 without restraints) Performing minimization step: 4789. Total energy = 2504.0104 kcal/mol (2498.5696 without restraints) Performing minimization step: 4790. Total energy = 2503.7474 kcal/mol (2498.3066 without restraints) Performing minimization step: 4791. Total energy = 2503.4856 kcal/mol (2498.0446 without restraints) Performing minimization step: 4792. Total energy = 2503.2259 kcal/mol (2497.7849 without restraints) Performing minimization step: 4793. Total energy = 2502.9674 kcal/mol (2497.5264 without restraints) Performing minimization step: 4794. Total energy = 2502.7104 kcal/mol (2497.2692 without restraints) Performing minimization step: 4795. Total energy = 2502.4547 kcal/mol (2497.0134 without restraints) Performing minimization step: 4796. Total energy = 2502.2005 kcal/mol (2496.7591 without restraints) Performing minimization step: 4797. Total energy = 2501.9474 kcal/mol (2496.5058 without restraints) Performing minimization step: 4798. Total energy = 2501.6960 kcal/mol (2496.2544 without restraints) Performing minimization step: 4799. Total energy = 2501.4459 kcal/mol (2496.0042 without restraints) Performing minimization step: 4800. Total energy = 2501.1973 kcal/mol (2495.7556 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 2500.9504 kcal/mol (2495.5085 without restraints) Performing minimization step: 4802. Total energy = 2500.7045 kcal/mol (2495.2624 without restraints) Performing minimization step: 4803. Total energy = 2500.4596 kcal/mol (2495.0174 without restraints) Performing minimization step: 4804. Total energy = 2500.2165 kcal/mol (2494.7741 without restraints) Performing minimization step: 4805. Total energy = 2499.9744 kcal/mol (2494.5319 without restraints) Performing minimization step: 4806. Total energy = 2499.7333 kcal/mol (2494.2907 without restraints) Performing minimization step: 4807. Total energy = 2499.4932 kcal/mol (2494.0502 without restraints) Performing minimization step: 4808. Total energy = 2499.2543 kcal/mol (2493.8114 without restraints) Performing minimization step: 4809. Total energy = 2499.0166 kcal/mol (2493.5735 without restraints) Performing minimization step: 4810. Total energy = 2498.7801 kcal/mol (2493.3368 without restraints) Performing minimization step: 4811. Total energy = 2498.5451 kcal/mol (2493.1017 without restraints) Performing minimization step: 4812. Total energy = 2498.3110 kcal/mol (2492.8675 without restraints) Performing minimization step: 4813. Total energy = 2498.0784 kcal/mol (2492.6346 without restraints) Performing minimization step: 4814. Total energy = 2497.8462 kcal/mol (2492.4023 without restraints) Performing minimization step: 4815. Total energy = 2497.6151 kcal/mol (2492.1710 without restraints) Performing minimization step: 4816. Total energy = 2497.3855 kcal/mol (2491.9413 without restraints) Performing minimization step: 4817. Total energy = 2497.1566 kcal/mol (2491.7122 without restraints) Performing minimization step: 4818. Total energy = 2496.9289 kcal/mol (2491.4842 without restraints) Performing minimization step: 4819. Total energy = 2496.7016 kcal/mol (2491.2567 without restraints) Performing minimization step: 4820. Total energy = 2496.4756 kcal/mol (2491.0305 without restraints) Performing minimization step: 4821. Total energy = 2496.2503 kcal/mol (2490.8050 without restraints) Performing minimization step: 4822. Total energy = 2496.0255 kcal/mol (2490.5801 without restraints) Performing minimization step: 4823. Total energy = 2495.8024 kcal/mol (2490.3567 without restraints) Performing minimization step: 4824. Total energy = 2495.5796 kcal/mol (2490.1337 without restraints) Performing minimization step: 4825. Total energy = 2495.3578 kcal/mol (2489.9120 without restraints) Performing minimization step: 4826. Total energy = 2495.1371 kcal/mol (2489.6909 without restraints) Performing minimization step: 4827. Total energy = 2494.9170 kcal/mol (2489.4705 without restraints) Performing minimization step: 4828. Total energy = 2494.6978 kcal/mol (2489.2512 without restraints) Performing minimization step: 4829. Total energy = 2494.4792 kcal/mol (2489.0322 without restraints) Performing minimization step: 4830. Total energy = 2494.2611 kcal/mol (2488.8140 without restraints) Performing minimization step: 4831. Total energy = 2494.0441 kcal/mol (2488.5967 without restraints) Performing minimization step: 4832. Total energy = 2493.8276 kcal/mol (2488.3800 without restraints) Performing minimization step: 4833. Total energy = 2493.6118 kcal/mol (2488.1639 without restraints) Performing minimization step: 4834. Total energy = 2493.3965 kcal/mol (2487.9484 without restraints) Performing minimization step: 4835. Total energy = 2493.1821 kcal/mol (2487.7337 without restraints) Performing minimization step: 4836. Total energy = 2492.9683 kcal/mol (2487.5198 without restraints) Performing minimization step: 4837. Total energy = 2492.7556 kcal/mol (2487.3068 without restraints) Performing minimization step: 4838. Total energy = 2492.5432 kcal/mol (2487.0941 without restraints) Performing minimization step: 4839. Total energy = 2492.3317 kcal/mol (2486.8823 without restraints) Performing minimization step: 4840. Total energy = 2492.1206 kcal/mol (2486.6710 without restraints) Performing minimization step: 4841. Total energy = 2491.9104 kcal/mol (2486.4606 without restraints) Performing minimization step: 4842. Total energy = 2491.7005 kcal/mol (2486.2505 without restraints) Performing minimization step: 4843. Total energy = 2491.4909 kcal/mol (2486.0405 without restraints) Performing minimization step: 4844. Total energy = 2491.2826 kcal/mol (2485.8320 without restraints) Performing minimization step: 4845. Total energy = 2491.0747 kcal/mol (2485.6238 without restraints) Performing minimization step: 4846. Total energy = 2490.8673 kcal/mol (2485.4162 without restraints) Performing minimization step: 4847. Total energy = 2490.6606 kcal/mol (2485.2093 without restraints) Performing minimization step: 4848. Total energy = 2490.4545 kcal/mol (2485.0030 without restraints) Performing minimization step: 4849. Total energy = 2490.2491 kcal/mol (2484.7972 without restraints) Performing minimization step: 4850. Total energy = 2490.0440 kcal/mol (2484.5918 without restraints) Performing minimization step: 4851. Total energy = 2489.8390 kcal/mol (2484.3866 without restraints) Performing minimization step: 4852. Total energy = 2489.6350 kcal/mol (2484.1823 without restraints) Performing minimization step: 4853. Total energy = 2489.4311 kcal/mol (2483.9781 without restraints) Performing minimization step: 4854. Total energy = 2489.2275 kcal/mol (2483.7742 without restraints) Performing minimization step: 4855. Total energy = 2489.0250 kcal/mol (2483.5716 without restraints) Performing minimization step: 4856. Total energy = 2488.8224 kcal/mol (2483.3685 without restraints) Performing minimization step: 4857. Total energy = 2488.6204 kcal/mol (2483.1662 without restraints) Performing minimization step: 4858. Total energy = 2488.4188 kcal/mol (2482.9643 without restraints) Performing minimization step: 4859. Total energy = 2488.2186 kcal/mol (2482.7639 without restraints) Performing minimization step: 4860. Total energy = 2488.0183 kcal/mol (2482.5635 without restraints) Performing minimization step: 4861. Total energy = 2487.8181 kcal/mol (2482.3628 without restraints) Performing minimization step: 4862. Total energy = 2487.6180 kcal/mol (2482.1625 without restraints) Performing minimization step: 4863. Total energy = 2487.4189 kcal/mol (2481.9630 without restraints) Performing minimization step: 4864. Total energy = 2487.2197 kcal/mol (2481.7635 without restraints) Performing minimization step: 4865. Total energy = 2487.0216 kcal/mol (2481.5651 without restraints) Performing minimization step: 4866. Total energy = 2486.8242 kcal/mol (2481.3675 without restraints) Performing minimization step: 4867. Total energy = 2486.6268 kcal/mol (2481.1697 without restraints) Performing minimization step: 4868. Total energy = 2486.4294 kcal/mol (2480.9720 without restraints) Performing minimization step: 4869. Total energy = 2486.2327 kcal/mol (2480.7752 without restraints) Performing minimization step: 4870. Total energy = 2486.0362 kcal/mol (2480.5783 without restraints) Performing minimization step: 4871. Total energy = 2485.8401 kcal/mol (2480.3818 without restraints) Performing minimization step: 4872. Total energy = 2485.6448 kcal/mol (2480.1861 without restraints) Performing minimization step: 4873. Total energy = 2485.4494 kcal/mol (2479.9905 without restraints) Performing minimization step: 4874. Total energy = 2485.2543 kcal/mol (2479.7951 without restraints) Performing minimization step: 4875. Total energy = 2485.0599 kcal/mol (2479.6005 without restraints) Performing minimization step: 4876. Total energy = 2484.8658 kcal/mol (2479.4059 without restraints) Performing minimization step: 4877. Total energy = 2484.6717 kcal/mol (2479.2115 without restraints) Performing minimization step: 4878. Total energy = 2484.4779 kcal/mol (2479.0175 without restraints) Performing minimization step: 4879. Total energy = 2484.2845 kcal/mol (2478.8237 without restraints) Performing minimization step: 4880. Total energy = 2484.0915 kcal/mol (2478.6305 without restraints) Performing minimization step: 4881. Total energy = 2483.8992 kcal/mol (2478.4378 without restraints) Performing minimization step: 4882. Total energy = 2483.7068 kcal/mol (2478.2451 without restraints) Performing minimization step: 4883. Total energy = 2483.5146 kcal/mol (2478.0526 without restraints) Performing minimization step: 4884. Total energy = 2483.3237 kcal/mol (2477.8614 without restraints) Performing minimization step: 4885. Total energy = 2483.1326 kcal/mol (2477.6700 without restraints) Performing minimization step: 4886. Total energy = 2482.9417 kcal/mol (2477.4788 without restraints) Performing minimization step: 4887. Total energy = 2482.7509 kcal/mol (2477.2876 without restraints) Performing minimization step: 4888. Total energy = 2482.5603 kcal/mol (2477.0967 without restraints) Performing minimization step: 4889. Total energy = 2482.3699 kcal/mol (2476.9059 without restraints) Performing minimization step: 4890. Total energy = 2482.1798 kcal/mol (2476.7156 without restraints) Performing minimization step: 4891. Total energy = 2481.9901 kcal/mol (2476.5255 without restraints) Performing minimization step: 4892. Total energy = 2481.8003 kcal/mol (2476.3354 without restraints) Performing minimization step: 4893. Total energy = 2481.6111 kcal/mol (2476.1459 without restraints) Performing minimization step: 4894. Total energy = 2481.4224 kcal/mol (2475.9569 without restraints) Performing minimization step: 4895. Total energy = 2481.2338 kcal/mol (2475.7679 without restraints) Performing minimization step: 4896. Total energy = 2481.0455 kcal/mol (2475.5793 without restraints) Performing minimization step: 4897. Total energy = 2480.8577 kcal/mol (2475.3912 without restraints) Performing minimization step: 4898. Total energy = 2480.6700 kcal/mol (2475.2032 without restraints) Performing minimization step: 4899. Total energy = 2480.4826 kcal/mol (2475.0154 without restraints) Performing minimization step: 4900. Total energy = 2480.2957 kcal/mol (2474.8282 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 2480.1090 kcal/mol (2474.6412 without restraints) Performing minimization step: 4902. Total energy = 2479.9225 kcal/mol (2474.4542 without restraints) Performing minimization step: 4903. Total energy = 2479.7359 kcal/mol (2474.2674 without restraints) Performing minimization step: 4904. Total energy = 2479.5497 kcal/mol (2474.0808 without restraints) Performing minimization step: 4905. Total energy = 2479.3636 kcal/mol (2473.8944 without restraints) Performing minimization step: 4906. Total energy = 2479.1781 kcal/mol (2473.7087 without restraints) Performing minimization step: 4907. Total energy = 2478.9930 kcal/mol (2473.5231 without restraints) Performing minimization step: 4908. Total energy = 2478.8077 kcal/mol (2473.3375 without restraints) Performing minimization step: 4909. Total energy = 2478.6226 kcal/mol (2473.1520 without restraints) Performing minimization step: 4910. Total energy = 2478.4380 kcal/mol (2472.9671 without restraints) Performing minimization step: 4911. Total energy = 2478.2533 kcal/mol (2472.7821 without restraints) Performing minimization step: 4912. Total energy = 2478.0690 kcal/mol (2472.5974 without restraints) Performing minimization step: 4913. Total energy = 2477.8850 kcal/mol (2472.4130 without restraints) Performing minimization step: 4914. Total energy = 2477.7013 kcal/mol (2472.2290 without restraints) Performing minimization step: 4915. Total energy = 2477.5179 kcal/mol (2472.0453 without restraints) Performing minimization step: 4916. Total energy = 2477.3345 kcal/mol (2471.8616 without restraints) Performing minimization step: 4917. Total energy = 2477.1513 kcal/mol (2471.6780 without restraints) Performing minimization step: 4918. Total energy = 2476.9687 kcal/mol (2471.4951 without restraints) Performing minimization step: 4919. Total energy = 2476.7859 kcal/mol (2471.3119 without restraints) Performing minimization step: 4920. Total energy = 2476.6035 kcal/mol (2471.1293 without restraints) Performing minimization step: 4921. Total energy = 2476.4212 kcal/mol (2470.9466 without restraints) Performing minimization step: 4922. Total energy = 2476.2391 kcal/mol (2470.7641 without restraints) Performing minimization step: 4923. Total energy = 2476.0575 kcal/mol (2470.5821 without restraints) Performing minimization step: 4924. Total energy = 2475.8764 kcal/mol (2470.4007 without restraints) Performing minimization step: 4925. Total energy = 2475.6949 kcal/mol (2470.2189 without restraints) Performing minimization step: 4926. Total energy = 2475.5135 kcal/mol (2470.0370 without restraints) Performing minimization step: 4927. Total energy = 2475.3324 kcal/mol (2469.8556 without restraints) Performing minimization step: 4928. Total energy = 2475.1516 kcal/mol (2469.6747 without restraints) Performing minimization step: 4929. Total energy = 2474.9712 kcal/mol (2469.4939 without restraints) Performing minimization step: 4930. Total energy = 2474.7910 kcal/mol (2469.3133 without restraints) Performing minimization step: 4931. Total energy = 2474.6109 kcal/mol (2469.1328 without restraints) Performing minimization step: 4932. Total energy = 2474.4313 kcal/mol (2468.9529 without restraints) Performing minimization step: 4933. Total energy = 2474.2514 kcal/mol (2468.7726 without restraints) Performing minimization step: 4934. Total energy = 2474.0717 kcal/mol (2468.5924 without restraints) Performing minimization step: 4935. Total energy = 2473.8922 kcal/mol (2468.4129 without restraints) Performing minimization step: 4936. Total energy = 2473.7133 kcal/mol (2468.2334 without restraints) Performing minimization step: 4937. Total energy = 2473.5346 kcal/mol (2468.0544 without restraints) Performing minimization step: 4938. Total energy = 2473.3562 kcal/mol (2467.8756 without restraints) Performing minimization step: 4939. Total energy = 2473.1776 kcal/mol (2467.6966 without restraints) Performing minimization step: 4940. Total energy = 2472.9991 kcal/mol (2467.5178 without restraints) Performing minimization step: 4941. Total energy = 2472.8209 kcal/mol (2467.3392 without restraints) Performing minimization step: 4942. Total energy = 2472.6428 kcal/mol (2467.1607 without restraints) Performing minimization step: 4943. Total energy = 2472.4651 kcal/mol (2466.9827 without restraints) Performing minimization step: 4944. Total energy = 2472.2878 kcal/mol (2466.8051 without restraints) Performing minimization step: 4945. Total energy = 2472.1100 kcal/mol (2466.6268 without restraints) Performing minimization step: 4946. Total energy = 2471.9328 kcal/mol (2466.4492 without restraints) Performing minimization step: 4947. Total energy = 2471.7556 kcal/mol (2466.2719 without restraints) Performing minimization step: 4948. Total energy = 2471.5789 kcal/mol (2466.0948 without restraints) Performing minimization step: 4949. Total energy = 2471.4022 kcal/mol (2465.9176 without restraints) Performing minimization step: 4950. Total energy = 2471.2256 kcal/mol (2465.7407 without restraints) Performing minimization step: 4951. Total energy = 2471.0494 kcal/mol (2465.5641 without restraints) Performing minimization step: 4952. Total energy = 2470.8732 kcal/mol (2465.3875 without restraints) Performing minimization step: 4953. Total energy = 2470.6970 kcal/mol (2465.2109 without restraints) Performing minimization step: 4954. Total energy = 2470.5212 kcal/mol (2465.0349 without restraints) Performing minimization step: 4955. Total energy = 2470.3454 kcal/mol (2464.8587 without restraints) Performing minimization step: 4956. Total energy = 2470.1698 kcal/mol (2464.6828 without restraints) Performing minimization step: 4957. Total energy = 2469.9943 kcal/mol (2464.5069 without restraints) Performing minimization step: 4958. Total energy = 2469.8197 kcal/mol (2464.3320 without restraints) Performing minimization step: 4959. Total energy = 2469.6453 kcal/mol (2464.1572 without restraints) Performing minimization step: 4960. Total energy = 2469.4707 kcal/mol (2463.9822 without restraints) Performing minimization step: 4961. Total energy = 2469.2960 kcal/mol (2463.8070 without restraints) Performing minimization step: 4962. Total energy = 2469.1217 kcal/mol (2463.6326 without restraints) Performing minimization step: 4963. Total energy = 2468.9476 kcal/mol (2463.4580 without restraints) Performing minimization step: 4964. Total energy = 2468.7737 kcal/mol (2463.2838 without restraints) Performing minimization step: 4965. Total energy = 2468.5997 kcal/mol (2463.1094 without restraints) Performing minimization step: 4966. Total energy = 2468.4260 kcal/mol (2462.9354 without restraints) Performing minimization step: 4967. Total energy = 2468.2528 kcal/mol (2462.7620 without restraints) Performing minimization step: 4968. Total energy = 2468.0797 kcal/mol (2462.5885 without restraints) Performing minimization step: 4969. Total energy = 2467.9065 kcal/mol (2462.4148 without restraints) Performing minimization step: 4970. Total energy = 2467.7336 kcal/mol (2462.2415 without restraints) Performing minimization step: 4971. Total energy = 2467.5609 kcal/mol (2462.0685 without restraints) Performing minimization step: 4972. Total energy = 2467.3882 kcal/mol (2461.8954 without restraints) Performing minimization step: 4973. Total energy = 2467.2156 kcal/mol (2461.7224 without restraints) Performing minimization step: 4974. Total energy = 2467.0434 kcal/mol (2461.5498 without restraints) Performing minimization step: 4975. Total energy = 2466.8711 kcal/mol (2461.3772 without restraints) Performing minimization step: 4976. Total energy = 2466.6989 kcal/mol (2461.2046 without restraints) Performing minimization step: 4977. Total energy = 2466.5270 kcal/mol (2461.0323 without restraints) Performing minimization step: 4978. Total energy = 2466.3552 kcal/mol (2460.8603 without restraints) Performing minimization step: 4979. Total energy = 2466.1839 kcal/mol (2460.6886 without restraints) Performing minimization step: 4980. Total energy = 2466.0125 kcal/mol (2460.5168 without restraints) Performing minimization step: 4981. Total energy = 2465.8419 kcal/mol (2460.3457 without restraints) Performing minimization step: 4982. Total energy = 2465.6708 kcal/mol (2460.1743 without restraints) Performing minimization step: 4983. Total energy = 2465.4999 kcal/mol (2460.0030 without restraints) Performing minimization step: 4984. Total energy = 2465.3289 kcal/mol (2459.8317 without restraints) Performing minimization step: 4985. Total energy = 2465.1585 kcal/mol (2459.6609 without restraints) Performing minimization step: 4986. Total energy = 2464.9887 kcal/mol (2459.4907 without restraints) Performing minimization step: 4987. Total energy = 2464.8186 kcal/mol (2459.3203 without restraints) Performing minimization step: 4988. Total energy = 2464.6488 kcal/mol (2459.1501 without restraints) Performing minimization step: 4989. Total energy = 2464.4789 kcal/mol (2458.9798 without restraints) Performing minimization step: 4990. Total energy = 2464.3097 kcal/mol (2458.8102 without restraints) Performing minimization step: 4991. Total energy = 2464.1405 kcal/mol (2458.6409 without restraints) Performing minimization step: 4992. Total energy = 2463.9715 kcal/mol (2458.4713 without restraints) Performing minimization step: 4993. Total energy = 2463.8022 kcal/mol (2458.3016 without restraints) Performing minimization step: 4994. Total energy = 2463.6327 kcal/mol (2458.1317 without restraints) Performing minimization step: 4995. Total energy = 2463.4639 kcal/mol (2457.9625 without restraints) Performing minimization step: 4996. Total energy = 2463.2951 kcal/mol (2457.7934 without restraints) Performing minimization step: 4997. Total energy = 2463.1265 kcal/mol (2457.6246 without restraints) Performing minimization step: 4998. Total energy = 2462.9577 kcal/mol (2457.4552 without restraints) Performing minimization step: 4999. Total energy = 2462.7894 kcal/mol (2457.2865 without restraints) Performing minimization step: 5000. Total energy = 2462.6209 kcal/mol (2457.1178 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/67e3a568/tmp/3a3a_refx/3a3a_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to 3a3a_refx.pdb DONE!