R1117noH.pdb .. processed
Traceback (most recent call last):
  File "/home/ubuntu/miniconda3/bin/rna_clarna_run.py", line 7, in <module>
    exec(compile(f.read(), __file__, 'exec'))
  File "/home/ubuntu/rna-tools/rna_tools/tools/clarna_play/rna_clarna_run.py", line 1194, in <module>
    seeClarna.eval_PDB(cl)
  File "/home/ubuntu/rna-tools/rna_tools/tools/clarna_play/rna_clarna_run.py", line 1087, in eval_PDB
    res_graph = self.cutils.start_clarna(flnm)
  File "/home/ubuntu/rna-tools/rna_tools/tools/clarna_play/rna_clarna_run.py", line 511, in start_clarna
    (pdb_id, s, close_doublets) = self.extract_close_doublets_from_fobject(fpdbObj)
  File "/home/ubuntu/rna-tools/rna_tools/tools/clarna_play/rna_clarna_run.py", line 450, in extract_close_doublets_from_fobject
    structure = self.load_pdb_fobject(fpdbObj)
  File "/home/ubuntu/rna-tools/rna_tools/tools/clarna_play/rna_clarna_run.py", line 438, in load_pdb_fobject
    res = parser.get_structure("c",fobject)
  File "/home/ubuntu/.local/lib/python3.8/site-packages/Bio/PDB/PDBParser.py", line 100, in get_structure
    self._parse(lines)
  File "/home/ubuntu/.local/lib/python3.8/site-packages/Bio/PDB/PDBParser.py", line 123, in _parse
    self.trailer = self._parse_coordinates(coords_trailer)
  File "/home/ubuntu/.local/lib/python3.8/site-packages/Bio/PDB/PDBParser.py", line 216, in _parse_coordinates
    raise PDBConstructionException(
Bio.PDB.PDBExceptions.PDBConstructionException: Invalid or missing coordinate(s) at line 1.
csv was created!  inf.csv
DONE!