============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997.pdb ============================================================================= Atom's 963 H6 residue renamed to RC3 Atom's 962 H5 residue renamed to RC3 Atom's 961 H41 residue renamed to RC3 Atom's 960 H42 residue renamed to RC3 Atom's 959 HO'2 residue renamed to RC3 Atom's 958 H2' residue renamed to RC3 Atom's 957 H1' residue renamed to RC3 Atom's 956 H3' residue renamed to RC3 Atom's 955 H4' residue renamed to RC3 Atom's 954 H5'2 residue renamed to RC3 Atom's 953 H5'1 residue renamed to RC3 Atom's 952 C6 residue renamed to RC3 Atom's 951 C5 residue renamed to RC3 Atom's 950 N4 residue renamed to RC3 Atom's 949 C4 residue renamed to RC3 Atom's 948 N3 residue renamed to RC3 Atom's 947 O2 residue renamed to RC3 Atom's 946 C2 residue renamed to RC3 Atom's 945 N1 residue renamed to RC3 Atom's 944 O2' residue renamed to RC3 Atom's 943 C2' residue renamed to RC3 Atom's 942 C1' residue renamed to RC3 Atom's 941 O3' residue renamed to RC3 Atom's 940 C3' residue renamed to RC3 Atom's 939 O4' residue renamed to RC3 Atom's 938 C4' residue renamed to RC3 Atom's 937 C5' residue renamed to RC3 Atom's 936 O5' residue renamed to RC3 Atom's 935 OP1 residue renamed to RC3 Atom's 934 OP2 residue renamed to RC3 Atom's 933 P residue renamed to RC3 Missing atom added: ATOM 32 H3T RC3 A 29 4.984 -10.266 9.559 1.00 0.00 H Missing atom added: ATOM 2 OP3 G A 1 -0.667 0.744 -0.906 1.00 0.00 X Number of atoms: 965 Number of residues: 29 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 1046 Number of angles built: 1864 Number of dihedrals built: 2838 Number of impropers built: 215 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 462220 Number of van der Waals pairs: 112701 Number of H-bonds built: 18 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 4 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 1689.3346 kcal/mol (1687.6591 without restraints) Performing minimization step: 2. Total energy = 1681.4896 kcal/mol (1679.8345 without restraints) Performing minimization step: 3. Total energy = 1673.8130 kcal/mol (1672.1774 without restraints) Performing minimization step: 4. Total energy = 1666.2975 kcal/mol (1664.6804 without restraints) Performing minimization step: 5. Total energy = 1658.9351 kcal/mol (1657.3357 without restraints) Performing minimization step: 6. Total energy = 1651.7194 kcal/mol (1650.1370 without restraints) Performing minimization step: 7. Total energy = 1644.6432 kcal/mol (1643.0769 without restraints) Performing minimization step: 8. Total energy = 1637.7004 kcal/mol (1636.1495 without restraints) Performing minimization step: 9. Total energy = 1630.8848 kcal/mol (1629.3486 without restraints) Performing minimization step: 10. Total energy = 1624.1910 kcal/mol (1622.6689 without restraints) Performing minimization step: 11. Total energy = 1617.6134 kcal/mol (1616.1048 without restraints) Performing minimization step: 12. Total energy = 1611.1470 kcal/mol (1609.6512 without restraints) Performing minimization step: 13. Total energy = 1604.7868 kcal/mol (1603.3033 without restraints) Performing minimization step: 14. Total energy = 1598.5279 kcal/mol (1597.0562 without restraints) Performing minimization step: 15. Total energy = 1592.3664 kcal/mol (1590.9059 without restraints) Performing minimization step: 16. Total energy = 1586.2979 kcal/mol (1584.8482 without restraints) Performing minimization step: 17. Total energy = 1580.3184 kcal/mol (1578.8790 without restraints) Performing minimization step: 18. Total energy = 1574.4243 kcal/mol (1572.9948 without restraints) Performing minimization step: 19. Total energy = 1568.6119 kcal/mol (1567.1919 without restraints) Performing minimization step: 20. Total energy = 1562.8779 kcal/mol (1561.4670 without restraints) Performing minimization step: 21. Total energy = 1557.2191 kcal/mol (1555.8169 without restraints) Performing minimization step: 22. Total energy = 1551.6326 kcal/mol (1550.2388 without restraints) Performing minimization step: 23. Total energy = 1546.1154 kcal/mol (1544.7297 without restraints) Performing minimization step: 24. Total energy = 1540.6649 kcal/mol (1539.2870 without restraints) Performing minimization step: 25. Total energy = 1535.2782 kcal/mol (1533.9077 without restraints) Performing minimization step: 26. Total energy = 1529.9537 kcal/mol (1528.5905 without restraints) Performing minimization step: 27. Total energy = 1524.6888 kcal/mol (1523.3325 without restraints) Performing minimization step: 28. Total energy = 1519.4809 kcal/mol (1518.1312 without restraints) Performing minimization step: 29. Total energy = 1514.3281 kcal/mol (1512.9849 without restraints) Performing minimization step: 30. Total energy = 1509.2288 kcal/mol (1507.8918 without restraints) Performing minimization step: 31. Total energy = 1504.1809 kcal/mol (1502.8500 without restraints) Performing minimization step: 32. Total energy = 1499.1828 kcal/mol (1497.8577 without restraints) Performing minimization step: 33. Total energy = 1494.2325 kcal/mol (1492.9129 without restraints) Performing minimization step: 34. Total energy = 1489.3290 kcal/mol (1488.0149 without restraints) Performing minimization step: 35. Total energy = 1484.4706 kcal/mol (1483.1618 without restraints) Performing minimization step: 36. Total energy = 1479.6560 kcal/mol (1478.3523 without restraints) Performing minimization step: 37. Total energy = 1474.8835 kcal/mol (1473.5849 without restraints) Performing minimization step: 38. Total energy = 1470.1524 kcal/mol (1468.8586 without restraints) Performing minimization step: 39. Total energy = 1465.4612 kcal/mol (1464.1721 without restraints) Performing minimization step: 40. Total energy = 1460.8089 kcal/mol (1459.5243 without restraints) Performing minimization step: 41. Total energy = 1456.1940 kcal/mol (1454.9140 without restraints) Performing minimization step: 42. Total energy = 1451.6163 kcal/mol (1450.3405 without restraints) Performing minimization step: 43. Total energy = 1447.0742 kcal/mol (1445.8027 without restraints) Performing minimization step: 44. Total energy = 1442.5671 kcal/mol (1441.2997 without restraints) Performing minimization step: 45. Total energy = 1438.0940 kcal/mol (1436.8306 without restraints) Performing minimization step: 46. Total energy = 1433.6541 kcal/mol (1432.3946 without restraints) Performing minimization step: 47. Total energy = 1429.2466 kcal/mol (1427.9910 without restraints) Performing minimization step: 48. Total energy = 1424.8709 kcal/mol (1423.6190 without restraints) Performing minimization step: 49. Total energy = 1420.5261 kcal/mol (1419.2779 without restraints) Performing minimization step: 50. Total energy = 1416.2116 kcal/mol (1414.9670 without restraints) Performing minimization step: 51. Total energy = 1411.9269 kcal/mol (1410.6858 without restraints) Performing minimization step: 52. Total energy = 1407.6714 kcal/mol (1406.4338 without restraints) Performing minimization step: 53. Total energy = 1403.4441 kcal/mol (1402.2099 without restraints) Performing minimization step: 54. Total energy = 1399.2448 kcal/mol (1398.0139 without restraints) Performing minimization step: 55. Total energy = 1395.0728 kcal/mol (1393.8452 without restraints) Performing minimization step: 56. Total energy = 1390.9280 kcal/mol (1389.7036 without restraints) Performing minimization step: 57. Total energy = 1386.8095 kcal/mol (1385.5882 without restraints) Performing minimization step: 58. Total energy = 1382.7169 kcal/mol (1381.4987 without restraints) Performing minimization step: 59. Total energy = 1378.6498 kcal/mol (1377.4347 without restraints) Performing minimization step: 60. Total energy = 1374.6077 kcal/mol (1373.3955 without restraints) Performing minimization step: 61. Total energy = 1370.5899 kcal/mol (1369.3807 without restraints) Performing minimization step: 62. Total energy = 1366.5970 kcal/mol (1365.3907 without restraints) Performing minimization step: 63. Total energy = 1362.6280 kcal/mol (1361.4244 without restraints) Performing minimization step: 64. Total energy = 1358.6826 kcal/mol (1357.4820 without restraints) Performing minimization step: 65. Total energy = 1354.7607 kcal/mol (1353.5630 without restraints) Performing minimization step: 66. Total energy = 1350.8618 kcal/mol (1349.6667 without restraints) Performing minimization step: 67. Total energy = 1346.9853 kcal/mol (1345.7930 without restraints) Performing minimization step: 68. Total energy = 1343.1309 kcal/mol (1341.9413 without restraints) Performing minimization step: 69. Total energy = 1339.2989 kcal/mol (1338.1120 without restraints) Performing minimization step: 70. Total energy = 1335.4888 kcal/mol (1334.3044 without restraints) Performing minimization step: 71. Total energy = 1331.7004 kcal/mol (1330.5186 without restraints) Performing minimization step: 72. Total energy = 1327.9331 kcal/mol (1326.7539 without restraints) Performing minimization step: 73. Total energy = 1324.1865 kcal/mol (1323.0098 without restraints) Performing minimization step: 74. Total energy = 1320.4610 kcal/mol (1319.2868 without restraints) Performing minimization step: 75. Total energy = 1316.7563 kcal/mol (1315.5847 without restraints) Performing minimization step: 76. Total energy = 1313.0718 kcal/mol (1311.9026 without restraints) Performing minimization step: 77. Total energy = 1309.4075 kcal/mol (1308.2407 without restraints) Performing minimization step: 78. Total energy = 1305.7632 kcal/mol (1304.5988 without restraints) Performing minimization step: 79. Total energy = 1302.1386 kcal/mol (1300.9767 without restraints) Performing minimization step: 80. Total energy = 1298.5336 kcal/mol (1297.3741 without restraints) Performing minimization step: 81. Total energy = 1294.9480 kcal/mol (1293.7908 without restraints) Performing minimization step: 82. Total energy = 1291.3817 kcal/mol (1290.2268 without restraints) Performing minimization step: 83. Total energy = 1287.8343 kcal/mol (1286.6817 without restraints) Performing minimization step: 84. Total energy = 1284.3060 kcal/mol (1283.1556 without restraints) Performing minimization step: 85. Total energy = 1280.7962 kcal/mol (1279.6482 without restraints) Performing minimization step: 86. Total energy = 1277.3051 kcal/mol (1276.1594 without restraints) Performing minimization step: 87. Total energy = 1273.8324 kcal/mol (1272.6889 without restraints) Performing minimization step: 88. Total energy = 1270.3778 kcal/mol (1269.2365 without restraints) Performing minimization step: 89. Total energy = 1266.9417 kcal/mol (1265.8026 without restraints) Performing minimization step: 90. Total energy = 1263.5236 kcal/mol (1262.3867 without restraints) Performing minimization step: 91. Total energy = 1260.1236 kcal/mol (1258.9889 without restraints) Performing minimization step: 92. Total energy = 1256.7410 kcal/mol (1255.6084 without restraints) Performing minimization step: 93. Total energy = 1253.3762 kcal/mol (1252.2458 without restraints) Performing minimization step: 94. Total energy = 1250.0285 kcal/mol (1248.9002 without restraints) Performing minimization step: 95. Total energy = 1246.6983 kcal/mol (1245.5721 without restraints) Performing minimization step: 96. Total energy = 1243.3854 kcal/mol (1242.2613 without restraints) Performing minimization step: 97. Total energy = 1240.0899 kcal/mol (1238.9679 without restraints) Performing minimization step: 98. Total energy = 1236.8111 kcal/mol (1235.6912 without restraints) Performing minimization step: 99. Total energy = 1233.5493 kcal/mol (1232.4315 without restraints) Performing minimization step: 100. Total energy = 1230.3044 kcal/mol (1229.1886 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 101. Total energy = 1227.0761 kcal/mol (1225.9624 without restraints) Performing minimization step: 102. Total energy = 1223.8644 kcal/mol (1222.7525 without restraints) Performing minimization step: 103. Total energy = 1220.6692 kcal/mol (1219.5595 without restraints) Performing minimization step: 104. Total energy = 1217.4906 kcal/mol (1216.3828 without restraints) Performing minimization step: 105. Total energy = 1214.3281 kcal/mol (1213.2225 without restraints) Performing minimization step: 106. Total energy = 1211.1820 kcal/mol (1210.0784 without restraints) Performing minimization step: 107. Total energy = 1208.0525 kcal/mol (1206.9510 without restraints) Performing minimization step: 108. Total energy = 1204.9386 kcal/mol (1203.8389 without restraints) Performing minimization step: 109. Total energy = 1201.8405 kcal/mol (1200.7427 without restraints) Performing minimization step: 110. Total energy = 1198.7587 kcal/mol (1197.6628 without restraints) Performing minimization step: 111. Total energy = 1195.6924 kcal/mol (1194.5985 without restraints) Performing minimization step: 112. Total energy = 1192.6417 kcal/mol (1191.5497 without restraints) Performing minimization step: 113. Total energy = 1189.6067 kcal/mol (1188.5167 without restraints) Performing minimization step: 114. Total energy = 1186.5876 kcal/mol (1185.4995 without restraints) Performing minimization step: 115. Total energy = 1183.5838 kcal/mol (1182.4976 without restraints) Performing minimization step: 116. Total energy = 1180.5954 kcal/mol (1179.5111 without restraints) Performing minimization step: 117. Total energy = 1177.6225 kcal/mol (1176.5401 without restraints) Performing minimization step: 118. Total energy = 1174.6645 kcal/mol (1173.5839 without restraints) Performing minimization step: 119. Total energy = 1171.7218 kcal/mol (1170.6431 without restraints) Performing minimization step: 120. Total energy = 1168.7943 kcal/mol (1167.7174 without restraints) Performing minimization step: 121. Total energy = 1165.8817 kcal/mol (1164.8068 without restraints) Performing minimization step: 122. Total energy = 1162.9842 kcal/mol (1161.9112 without restraints) Performing minimization step: 123. Total energy = 1160.1015 kcal/mol (1159.0302 without restraints) Performing minimization step: 124. Total energy = 1157.2336 kcal/mol (1156.1641 without restraints) Performing minimization step: 125. Total energy = 1154.3805 kcal/mol (1153.3128 without restraints) Performing minimization step: 126. Total energy = 1151.5421 kcal/mol (1150.4762 without restraints) Performing minimization step: 127. Total energy = 1148.7180 kcal/mol (1147.6541 without restraints) Performing minimization step: 128. Total energy = 1145.9086 kcal/mol (1144.8464 without restraints) Performing minimization step: 129. Total energy = 1143.1138 kcal/mol (1142.0534 without restraints) Performing minimization step: 130. Total energy = 1140.3335 kcal/mol (1139.2750 without restraints) Performing minimization step: 131. Total energy = 1137.5676 kcal/mol (1136.5108 without restraints) Performing minimization step: 132. Total energy = 1134.8158 kcal/mol (1133.7608 without restraints) Performing minimization step: 133. Total energy = 1132.0783 kcal/mol (1131.0250 without restraints) Performing minimization step: 134. Total energy = 1129.3549 kcal/mol (1128.3033 without restraints) Performing minimization step: 135. Total energy = 1126.6458 kcal/mol (1125.5960 without restraints) Performing minimization step: 136. Total energy = 1123.9503 kcal/mol (1122.9023 without restraints) Performing minimization step: 137. Total energy = 1121.2691 kcal/mol (1120.2228 without restraints) Performing minimization step: 138. Total energy = 1118.6017 kcal/mol (1117.5571 without restraints) Performing minimization step: 139. Total energy = 1115.9482 kcal/mol (1114.9053 without restraints) Performing minimization step: 140. Total energy = 1113.3086 kcal/mol (1112.2675 without restraints) Performing minimization step: 141. Total energy = 1110.6826 kcal/mol (1109.6432 without restraints) Performing minimization step: 142. Total energy = 1108.0703 kcal/mol (1107.0326 without restraints) Performing minimization step: 143. Total energy = 1105.4716 kcal/mol (1104.4356 without restraints) Performing minimization step: 144. Total energy = 1102.8864 kcal/mol (1101.8520 without restraints) Performing minimization step: 145. Total energy = 1100.3146 kcal/mol (1099.2820 without restraints) Performing minimization step: 146. Total energy = 1097.7563 kcal/mol (1096.7253 without restraints) Performing minimization step: 147. Total energy = 1095.2114 kcal/mol (1094.1821 without restraints) Performing minimization step: 148. Total energy = 1092.6798 kcal/mol (1091.6521 without restraints) Performing minimization step: 149. Total energy = 1090.1616 kcal/mol (1089.1357 without restraints) Performing minimization step: 150. Total energy = 1087.6564 kcal/mol (1086.6321 without restraints) Performing minimization step: 151. Total energy = 1085.1642 kcal/mol (1084.1415 without restraints) Performing minimization step: 152. Total energy = 1082.6852 kcal/mol (1081.6641 without restraints) Performing minimization step: 153. Total energy = 1080.2192 kcal/mol (1079.1998 without restraints) Performing minimization step: 154. Total energy = 1077.7662 kcal/mol (1076.7484 without restraints) Performing minimization step: 155. Total energy = 1075.3261 kcal/mol (1074.3099 without restraints) Performing minimization step: 156. Total energy = 1072.8991 kcal/mol (1071.8847 without restraints) Performing minimization step: 157. Total energy = 1070.4847 kcal/mol (1069.4718 without restraints) Performing minimization step: 158. Total energy = 1068.0827 kcal/mol (1067.0714 without restraints) Performing minimization step: 159. Total energy = 1065.6938 kcal/mol (1064.6841 without restraints) Performing minimization step: 160. Total energy = 1063.3173 kcal/mol (1062.3092 without restraints) Performing minimization step: 161. Total energy = 1060.9528 kcal/mol (1059.9462 without restraints) Performing minimization step: 162. Total energy = 1058.6013 kcal/mol (1057.5963 without restraints) Performing minimization step: 163. Total energy = 1056.2623 kcal/mol (1055.2589 without restraints) Performing minimization step: 164. Total energy = 1053.9357 kcal/mol (1052.9338 without restraints) Performing minimization step: 165. Total energy = 1051.6211 kcal/mol (1050.6208 without restraints) Performing minimization step: 166. Total energy = 1049.3191 kcal/mol (1048.3203 without restraints) Performing minimization step: 167. Total energy = 1047.0292 kcal/mol (1046.0320 without restraints) Performing minimization step: 168. Total energy = 1044.7517 kcal/mol (1043.7560 without restraints) Performing minimization step: 169. Total energy = 1042.4859 kcal/mol (1041.4917 without restraints) Performing minimization step: 170. Total energy = 1040.2323 kcal/mol (1039.2397 without restraints) Performing minimization step: 171. Total energy = 1037.9907 kcal/mol (1036.9996 without restraints) Performing minimization step: 172. Total energy = 1035.7609 kcal/mol (1034.7713 without restraints) Performing minimization step: 173. Total energy = 1033.5431 kcal/mol (1032.5550 without restraints) Performing minimization step: 174. Total energy = 1031.3371 kcal/mol (1030.3505 without restraints) Performing minimization step: 175. Total energy = 1029.1428 kcal/mol (1028.1578 without restraints) Performing minimization step: 176. Total energy = 1026.9603 kcal/mol (1025.9767 without restraints) Performing minimization step: 177. Total energy = 1024.7894 kcal/mol (1023.8073 without restraints) Performing minimization step: 178. Total energy = 1022.6298 kcal/mol (1021.6492 without restraints) Performing minimization step: 179. Total energy = 1020.4820 kcal/mol (1019.5029 without restraints) Performing minimization step: 180. Total energy = 1018.3457 kcal/mol (1017.3680 without restraints) Performing minimization step: 181. Total energy = 1016.2208 kcal/mol (1015.2446 without restraints) Performing minimization step: 182. Total energy = 1014.1072 kcal/mol (1013.1324 without restraints) Performing minimization step: 183. Total energy = 1012.0049 kcal/mol (1011.0316 without restraints) Performing minimization step: 184. Total energy = 1009.9139 kcal/mol (1008.9420 without restraints) Performing minimization step: 185. Total energy = 1007.8338 kcal/mol (1006.8633 without restraints) Performing minimization step: 186. Total energy = 1005.7650 kcal/mol (1004.7960 without restraints) Performing minimization step: 187. Total energy = 1003.7074 kcal/mol (1002.7398 without restraints) Performing minimization step: 188. Total energy = 1001.6608 kcal/mol (1000.6947 without restraints) Performing minimization step: 189. Total energy = 999.6251 kcal/mol (998.6604 without restraints) Performing minimization step: 190. Total energy = 997.6001 kcal/mol (996.6367 without restraints) Performing minimization step: 191. Total energy = 995.5861 kcal/mol (994.6241 without restraints) Performing minimization step: 192. Total energy = 993.5826 kcal/mol (992.6220 without restraints) Performing minimization step: 193. Total energy = 991.5901 kcal/mol (990.6309 without restraints) Performing minimization step: 194. Total energy = 989.6082 kcal/mol (988.6504 without restraints) Performing minimization step: 195. Total energy = 987.6370 kcal/mol (986.6806 without restraints) Performing minimization step: 196. Total energy = 985.6763 kcal/mol (984.7212 without restraints) Performing minimization step: 197. Total energy = 983.7261 kcal/mol (982.7724 without restraints) Performing minimization step: 198. Total energy = 981.7865 kcal/mol (980.8341 without restraints) Performing minimization step: 199. Total energy = 979.8571 kcal/mol (978.9061 without restraints) Performing minimization step: 200. Total energy = 977.9380 kcal/mol (976.9883 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 201. Total energy = 976.0292 kcal/mol (975.0809 without restraints) Performing minimization step: 202. Total energy = 974.1304 kcal/mol (973.1834 without restraints) Performing minimization step: 203. Total energy = 972.2418 kcal/mol (971.2961 without restraints) Performing minimization step: 204. Total energy = 970.3633 kcal/mol (969.4189 without restraints) Performing minimization step: 205. Total energy = 968.4949 kcal/mol (967.5518 without restraints) Performing minimization step: 206. Total energy = 966.6363 kcal/mol (965.6945 without restraints) Performing minimization step: 207. Total energy = 964.7878 kcal/mol (963.8473 without restraints) Performing minimization step: 208. Total energy = 962.9490 kcal/mol (962.0098 without restraints) Performing minimization step: 209. Total energy = 961.1201 kcal/mol (960.1822 without restraints) Performing minimization step: 210. Total energy = 959.3009 kcal/mol (958.3643 without restraints) Performing minimization step: 211. Total energy = 957.4916 kcal/mol (956.5562 without restraints) Performing minimization step: 212. Total energy = 955.6916 kcal/mol (954.7575 without restraints) Performing minimization step: 213. Total energy = 953.9010 kcal/mol (952.9682 without restraints) Performing minimization step: 214. Total energy = 952.1202 kcal/mol (951.1886 without restraints) Performing minimization step: 215. Total energy = 950.3487 kcal/mol (949.4183 without restraints) Performing minimization step: 216. Total energy = 948.5868 kcal/mol (947.6577 without restraints) Performing minimization step: 217. Total energy = 946.8340 kcal/mol (945.9061 without restraints) Performing minimization step: 218. Total energy = 945.0903 kcal/mol (944.1636 without restraints) Performing minimization step: 219. Total energy = 943.3560 kcal/mol (942.4306 without restraints) Performing minimization step: 220. Total energy = 941.6308 kcal/mol (940.7066 without restraints) Performing minimization step: 221. Total energy = 939.9150 kcal/mol (938.9920 without restraints) Performing minimization step: 222. Total energy = 938.2079 kcal/mol (937.2861 without restraints) Performing minimization step: 223. Total energy = 936.5095 kcal/mol (935.5888 without restraints) Performing minimization step: 224. Total energy = 934.8203 kcal/mol (933.9009 without restraints) Performing minimization step: 225. Total energy = 933.1401 kcal/mol (932.2218 without restraints) Performing minimization step: 226. Total energy = 931.4688 kcal/mol (930.5517 without restraints) Performing minimization step: 227. Total energy = 929.8060 kcal/mol (928.8901 without restraints) Performing minimization step: 228. Total energy = 928.1520 kcal/mol (927.2372 without restraints) Performing minimization step: 229. Total energy = 926.5065 kcal/mol (925.5930 without restraints) Performing minimization step: 230. Total energy = 924.8697 kcal/mol (923.9572 without restraints) Performing minimization step: 231. Total energy = 923.2413 kcal/mol (922.3300 without restraints) Performing minimization step: 232. Total energy = 921.6213 kcal/mol (920.7112 without restraints) Performing minimization step: 233. Total energy = 920.0098 kcal/mol (919.1008 without restraints) Performing minimization step: 234. Total energy = 918.4063 kcal/mol (917.4984 without restraints) Performing minimization step: 235. Total energy = 916.8114 kcal/mol (915.9047 without restraints) Performing minimization step: 236. Total energy = 915.2245 kcal/mol (914.3189 without restraints) Performing minimization step: 237. Total energy = 913.6459 kcal/mol (912.7414 without restraints) Performing minimization step: 238. Total energy = 912.0756 kcal/mol (911.1722 without restraints) Performing minimization step: 239. Total energy = 910.5132 kcal/mol (909.6109 without restraints) Performing minimization step: 240. Total energy = 908.9590 kcal/mol (908.0578 without restraints) Performing minimization step: 241. Total energy = 907.4125 kcal/mol (906.5124 without restraints) Performing minimization step: 242. Total energy = 905.8739 kcal/mol (904.9749 without restraints) Performing minimization step: 243. Total energy = 904.3433 kcal/mol (903.4453 without restraints) Performing minimization step: 244. Total energy = 902.8203 kcal/mol (901.9234 without restraints) Performing minimization step: 245. Total energy = 901.3050 kcal/mol (900.4092 without restraints) Performing minimization step: 246. Total energy = 899.7973 kcal/mol (898.9026 without restraints) Performing minimization step: 247. Total energy = 898.2973 kcal/mol (897.4036 without restraints) Performing minimization step: 248. Total energy = 896.8049 kcal/mol (895.9123 without restraints) Performing minimization step: 249. Total energy = 895.3199 kcal/mol (894.4283 without restraints) Performing minimization step: 250. Total energy = 893.8424 kcal/mol (892.9518 without restraints) Performing minimization step: 251. Total energy = 892.3720 kcal/mol (891.4824 without restraints) Performing minimization step: 252. Total energy = 890.9091 kcal/mol (890.0206 without restraints) Performing minimization step: 253. Total energy = 889.4537 kcal/mol (888.5661 without restraints) Performing minimization step: 254. Total energy = 888.0053 kcal/mol (887.1188 without restraints) Performing minimization step: 255. Total energy = 886.5642 kcal/mol (885.6786 without restraints) Performing minimization step: 256. Total energy = 885.1301 kcal/mol (884.2455 without restraints) Performing minimization step: 257. Total energy = 883.7030 kcal/mol (882.8195 without restraints) Performing minimization step: 258. Total energy = 882.2830 kcal/mol (881.4005 without restraints) Performing minimization step: 259. Total energy = 880.8699 kcal/mol (879.9883 without restraints) Performing minimization step: 260. Total energy = 879.4638 kcal/mol (878.5832 without restraints) Performing minimization step: 261. Total energy = 878.0642 kcal/mol (877.1846 without restraints) Performing minimization step: 262. Total energy = 876.6716 kcal/mol (875.7930 without restraints) Performing minimization step: 263. Total energy = 875.2858 kcal/mol (874.4081 without restraints) Performing minimization step: 264. Total energy = 873.9069 kcal/mol (873.0302 without restraints) Performing minimization step: 265. Total energy = 872.5345 kcal/mol (871.6587 without restraints) Performing minimization step: 266. Total energy = 871.1686 kcal/mol (870.2937 without restraints) Performing minimization step: 267. Total energy = 869.8093 kcal/mol (868.9353 without restraints) Performing minimization step: 268. Total energy = 868.4565 kcal/mol (867.5835 without restraints) Performing minimization step: 269. Total energy = 867.1100 kcal/mol (866.2380 without restraints) Performing minimization step: 270. Total energy = 865.7699 kcal/mol (864.8986 without restraints) Performing minimization step: 271. Total energy = 864.4361 kcal/mol (863.5659 without restraints) Performing minimization step: 272. Total energy = 863.1087 kcal/mol (862.2394 without restraints) Performing minimization step: 273. Total energy = 861.7875 kcal/mol (860.9191 without restraints) Performing minimization step: 274. Total energy = 860.4726 kcal/mol (859.6051 without restraints) Performing minimization step: 275. Total energy = 859.1638 kcal/mol (858.2973 without restraints) Performing minimization step: 276. Total energy = 857.8608 kcal/mol (856.9952 without restraints) Performing minimization step: 277. Total energy = 856.5642 kcal/mol (855.6994 without restraints) Performing minimization step: 278. Total energy = 855.2736 kcal/mol (854.4097 without restraints) Performing minimization step: 279. Total energy = 853.9893 kcal/mol (853.1262 without restraints) Performing minimization step: 280. Total energy = 852.7105 kcal/mol (851.8482 without restraints) Performing minimization step: 281. Total energy = 851.4374 kcal/mol (850.5761 without restraints) Performing minimization step: 282. Total energy = 850.1703 kcal/mol (849.3099 without restraints) Performing minimization step: 283. Total energy = 848.9090 kcal/mol (848.0494 without restraints) Performing minimization step: 284. Total energy = 847.6534 kcal/mol (846.7947 without restraints) Performing minimization step: 285. Total energy = 846.4033 kcal/mol (845.5454 without restraints) Performing minimization step: 286. Total energy = 845.1591 kcal/mol (844.3020 without restraints) Performing minimization step: 287. Total energy = 843.9203 kcal/mol (843.0641 without restraints) Performing minimization step: 288. Total energy = 842.6873 kcal/mol (841.8320 without restraints) Performing minimization step: 289. Total energy = 841.4598 kcal/mol (840.6053 without restraints) Performing minimization step: 290. Total energy = 840.2375 kcal/mol (839.3838 without restraints) Performing minimization step: 291. Total energy = 839.0208 kcal/mol (838.1680 without restraints) Performing minimization step: 292. Total energy = 837.8096 kcal/mol (836.9575 without restraints) Performing minimization step: 293. Total energy = 836.6035 kcal/mol (835.7523 without restraints) Performing minimization step: 294. Total energy = 835.4029 kcal/mol (834.5525 without restraints) Performing minimization step: 295. Total energy = 834.2076 kcal/mol (833.3580 without restraints) Performing minimization step: 296. Total energy = 833.0175 kcal/mol (832.1686 without restraints) Performing minimization step: 297. Total energy = 831.8325 kcal/mol (830.9845 without restraints) Performing minimization step: 298. Total energy = 830.6528 kcal/mol (829.8056 without restraints) Performing minimization step: 299. Total energy = 829.4780 kcal/mol (828.6316 without restraints) Performing minimization step: 300. Total energy = 828.3085 kcal/mol (827.4628 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 301. Total energy = 827.1439 kcal/mol (826.2991 without restraints) Performing minimization step: 302. Total energy = 825.9843 kcal/mol (825.1403 without restraints) Performing minimization step: 303. Total energy = 824.8297 kcal/mol (823.9864 without restraints) Performing minimization step: 304. Total energy = 823.6797 kcal/mol (822.8372 without restraints) Performing minimization step: 305. Total energy = 822.5350 kcal/mol (821.6932 without restraints) Performing minimization step: 306. Total energy = 821.3949 kcal/mol (820.5539 without restraints) Performing minimization step: 307. Total energy = 820.2598 kcal/mol (819.4195 without restraints) Performing minimization step: 308. Total energy = 819.1294 kcal/mol (818.2899 without restraints) Performing minimization step: 309. Total energy = 818.0038 kcal/mol (817.1650 without restraints) Performing minimization step: 310. Total energy = 816.8828 kcal/mol (816.0448 without restraints) Performing minimization step: 311. Total energy = 815.7663 kcal/mol (814.9289 without restraints) Performing minimization step: 312. Total energy = 814.6545 kcal/mol (813.8180 without restraints) Performing minimization step: 313. Total energy = 813.5474 kcal/mol (812.7117 without restraints) Performing minimization step: 314. Total energy = 812.4450 kcal/mol (811.6100 without restraints) Performing minimization step: 315. Total energy = 811.3471 kcal/mol (810.5130 without restraints) Performing minimization step: 316. Total energy = 810.2538 kcal/mol (809.4202 without restraints) Performing minimization step: 317. Total energy = 809.1648 kcal/mol (808.3320 without restraints) Performing minimization step: 318. Total energy = 808.0803 kcal/mol (807.2482 without restraints) Performing minimization step: 319. Total energy = 807.0002 kcal/mol (806.1688 without restraints) Performing minimization step: 320. Total energy = 805.9247 kcal/mol (805.0941 without restraints) Performing minimization step: 321. Total energy = 804.8533 kcal/mol (804.0234 without restraints) Performing minimization step: 322. Total energy = 803.7862 kcal/mol (802.9570 without restraints) Performing minimization step: 323. Total energy = 802.7235 kcal/mol (801.8950 without restraints) Performing minimization step: 324. Total energy = 801.6649 kcal/mol (800.8372 without restraints) Performing minimization step: 325. Total energy = 800.6106 kcal/mol (799.7836 without restraints) Performing minimization step: 326. Total energy = 799.5606 kcal/mol (798.7342 without restraints) Performing minimization step: 327. Total energy = 798.5149 kcal/mol (797.6892 without restraints) Performing minimization step: 328. Total energy = 797.4728 kcal/mol (796.6478 without restraints) Performing minimization step: 329. Total energy = 796.4353 kcal/mol (795.6110 without restraints) Performing minimization step: 330. Total energy = 795.4017 kcal/mol (794.5781 without restraints) Performing minimization step: 331. Total energy = 794.3720 kcal/mol (793.5491 without restraints) Performing minimization step: 332. Total energy = 793.3465 kcal/mol (792.5243 without restraints) Performing minimization step: 333. Total energy = 792.3250 kcal/mol (791.5035 without restraints) Performing minimization step: 334. Total energy = 791.3075 kcal/mol (790.4866 without restraints) Performing minimization step: 335. Total energy = 790.2939 kcal/mol (789.4737 without restraints) Performing minimization step: 336. Total energy = 789.2843 kcal/mol (788.4648 without restraints) Performing minimization step: 337. Total energy = 788.2786 kcal/mol (787.4597 without restraints) Performing minimization step: 338. Total energy = 787.2763 kcal/mol (786.4581 without restraints) Performing minimization step: 339. Total energy = 786.2783 kcal/mol (785.4608 without restraints) Performing minimization step: 340. Total energy = 785.2841 kcal/mol (784.4673 without restraints) Performing minimization step: 341. Total energy = 784.2937 kcal/mol (783.4776 without restraints) Performing minimization step: 342. Total energy = 783.3073 kcal/mol (782.4918 without restraints) Performing minimization step: 343. Total energy = 782.3245 kcal/mol (781.5097 without restraints) Performing minimization step: 344. Total energy = 781.3454 kcal/mol (780.5312 without restraints) Performing minimization step: 345. Total energy = 780.3700 kcal/mol (779.5565 without restraints) Performing minimization step: 346. Total energy = 779.3983 kcal/mol (778.5855 without restraints) Performing minimization step: 347. Total energy = 778.4304 kcal/mol (777.6181 without restraints) Performing minimization step: 348. Total energy = 777.4661 kcal/mol (776.6547 without restraints) Performing minimization step: 349. Total energy = 776.5055 kcal/mol (775.6946 without restraints) Performing minimization step: 350. Total energy = 775.5480 kcal/mol (774.7377 without restraints) Performing minimization step: 351. Total energy = 774.5945 kcal/mol (773.7848 without restraints) Performing minimization step: 352. Total energy = 773.6442 kcal/mol (772.8352 without restraints) Performing minimization step: 353. Total energy = 772.6979 kcal/mol (771.8896 without restraints) Performing minimization step: 354. Total energy = 771.7550 kcal/mol (770.9473 without restraints) Performing minimization step: 355. Total energy = 770.8157 kcal/mol (770.0087 without restraints) Performing minimization step: 356. Total energy = 769.8799 kcal/mol (769.0734 without restraints) Performing minimization step: 357. Total energy = 768.9473 kcal/mol (768.1415 without restraints) Performing minimization step: 358. Total energy = 768.0183 kcal/mol (767.2131 without restraints) Performing minimization step: 359. Total energy = 767.0926 kcal/mol (766.2880 without restraints) Performing minimization step: 360. Total energy = 766.1704 kcal/mol (765.3664 without restraints) Performing minimization step: 361. Total energy = 765.2515 kcal/mol (764.4481 without restraints) Performing minimization step: 362. Total energy = 764.3357 kcal/mol (763.5331 without restraints) Performing minimization step: 363. Total energy = 763.4236 kcal/mol (762.6216 without restraints) Performing minimization step: 364. Total energy = 762.5146 kcal/mol (761.7132 without restraints) Performing minimization step: 365. Total energy = 761.6091 kcal/mol (760.8083 without restraints) Performing minimization step: 366. Total energy = 760.7070 kcal/mol (759.9069 without restraints) Performing minimization step: 367. Total energy = 759.8081 kcal/mol (759.0085 without restraints) Performing minimization step: 368. Total energy = 758.9124 kcal/mol (758.1134 without restraints) Performing minimization step: 369. Total energy = 758.0196 kcal/mol (757.2212 without restraints) Performing minimization step: 370. Total energy = 757.1303 kcal/mol (756.3325 without restraints) Performing minimization step: 371. Total energy = 756.2443 kcal/mol (755.4471 without restraints) Performing minimization step: 372. Total energy = 755.3614 kcal/mol (754.5649 without restraints) Performing minimization step: 373. Total energy = 754.4818 kcal/mol (753.6858 without restraints) Performing minimization step: 374. Total energy = 753.6054 kcal/mol (752.8102 without restraints) Performing minimization step: 375. Total energy = 752.7321 kcal/mol (751.9374 without restraints) Performing minimization step: 376. Total energy = 751.8619 kcal/mol (751.0678 without restraints) Performing minimization step: 377. Total energy = 750.9947 kcal/mol (750.2012 without restraints) Performing minimization step: 378. Total energy = 750.1307 kcal/mol (749.3378 without restraints) Performing minimization step: 379. Total energy = 749.2698 kcal/mol (748.4775 without restraints) Performing minimization step: 380. Total energy = 748.4117 kcal/mol (747.6200 without restraints) Performing minimization step: 381. Total energy = 747.5569 kcal/mol (746.7658 without restraints) Performing minimization step: 382. Total energy = 746.7046 kcal/mol (745.9141 without restraints) Performing minimization step: 383. Total energy = 745.8564 kcal/mol (745.0665 without restraints) Performing minimization step: 384. Total energy = 745.0107 kcal/mol (744.2213 without restraints) Performing minimization step: 385. Total energy = 744.1680 kcal/mol (743.3794 without restraints) Performing minimization step: 386. Total energy = 743.3284 kcal/mol (742.5403 without restraints) Performing minimization step: 387. Total energy = 742.4915 kcal/mol (741.7040 without restraints) Performing minimization step: 388. Total energy = 741.6576 kcal/mol (740.8707 without restraints) Performing minimization step: 389. Total energy = 740.8266 kcal/mol (740.0403 without restraints) Performing minimization step: 390. Total energy = 739.9986 kcal/mol (739.2128 without restraints) Performing minimization step: 391. Total energy = 739.1735 kcal/mol (738.3883 without restraints) Performing minimization step: 392. Total energy = 738.3514 kcal/mol (737.5668 without restraints) Performing minimization step: 393. Total energy = 737.5316 kcal/mol (736.7476 without restraints) Performing minimization step: 394. Total energy = 736.7152 kcal/mol (735.9317 without restraints) Performing minimization step: 395. Total energy = 735.9016 kcal/mol (735.1187 without restraints) Performing minimization step: 396. Total energy = 735.0905 kcal/mol (734.3082 without restraints) Performing minimization step: 397. Total energy = 734.2825 kcal/mol (733.5009 without restraints) Performing minimization step: 398. Total energy = 733.4775 kcal/mol (732.6965 without restraints) Performing minimization step: 399. Total energy = 732.6753 kcal/mol (731.8947 without restraints) Performing minimization step: 400. Total energy = 731.8757 kcal/mol (731.0958 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 401. Total energy = 731.0789 kcal/mol (730.2996 without restraints) Performing minimization step: 402. Total energy = 730.2850 kcal/mol (729.5062 without restraints) Performing minimization step: 403. Total energy = 729.4935 kcal/mol (728.7153 without restraints) Performing minimization step: 404. Total energy = 728.7050 kcal/mol (727.9274 without restraints) Performing minimization step: 405. Total energy = 727.9192 kcal/mol (727.1422 without restraints) Performing minimization step: 406. Total energy = 727.1362 kcal/mol (726.3597 without restraints) Performing minimization step: 407. Total energy = 726.3556 kcal/mol (725.5796 without restraints) Performing minimization step: 408. Total energy = 725.5779 kcal/mol (724.8026 without restraints) Performing minimization step: 409. Total energy = 724.8029 kcal/mol (724.0282 without restraints) Performing minimization step: 410. Total energy = 724.0307 kcal/mol (723.2565 without restraints) Performing minimization step: 411. Total energy = 723.2612 kcal/mol (722.4876 without restraints) Performing minimization step: 412. Total energy = 722.4941 kcal/mol (721.7210 without restraints) Performing minimization step: 413. Total energy = 721.7297 kcal/mol (720.9573 without restraints) Performing minimization step: 414. Total energy = 720.9680 kcal/mol (720.1961 without restraints) Performing minimization step: 415. Total energy = 720.2089 kcal/mol (719.4375 without restraints) Performing minimization step: 416. Total energy = 719.4526 kcal/mol (718.6818 without restraints) Performing minimization step: 417. Total energy = 718.6988 kcal/mol (717.9285 without restraints) Performing minimization step: 418. Total energy = 717.9475 kcal/mol (717.1778 without restraints) Performing minimization step: 419. Total energy = 717.1987 kcal/mol (716.4296 without restraints) Performing minimization step: 420. Total energy = 716.4525 kcal/mol (715.6841 without restraints) Performing minimization step: 421. Total energy = 715.7091 kcal/mol (714.9411 without restraints) Performing minimization step: 422. Total energy = 714.9684 kcal/mol (714.2011 without restraints) Performing minimization step: 423. Total energy = 714.2299 kcal/mol (713.4631 without restraints) Performing minimization step: 424. Total energy = 713.4940 kcal/mol (712.7277 without restraints) Performing minimization step: 425. Total energy = 712.7604 kcal/mol (711.9945 without restraints) Performing minimization step: 426. Total energy = 712.0290 kcal/mol (711.2639 without restraints) Performing minimization step: 427. Total energy = 711.3005 kcal/mol (710.5359 without restraints) Performing minimization step: 428. Total energy = 710.5745 kcal/mol (709.8104 without restraints) Performing minimization step: 429. Total energy = 709.8510 kcal/mol (709.0876 without restraints) Performing minimization step: 430. Total energy = 709.1302 kcal/mol (708.3673 without restraints) Performing minimization step: 431. Total energy = 708.4113 kcal/mol (707.6489 without restraints) Performing minimization step: 432. Total energy = 707.6951 kcal/mol (706.9333 without restraints) Performing minimization step: 433. Total energy = 706.9814 kcal/mol (706.2201 without restraints) Performing minimization step: 434. Total energy = 706.2701 kcal/mol (705.5093 without restraints) Performing minimization step: 435. Total energy = 705.5611 kcal/mol (704.8010 without restraints) Performing minimization step: 436. Total energy = 704.8548 kcal/mol (704.0952 without restraints) Performing minimization step: 437. Total energy = 704.1507 kcal/mol (703.3916 without restraints) Performing minimization step: 438. Total energy = 703.4487 kcal/mol (702.6901 without restraints) Performing minimization step: 439. Total energy = 702.7491 kcal/mol (701.9911 without restraints) Performing minimization step: 440. Total energy = 702.0521 kcal/mol (701.2947 without restraints) Performing minimization step: 441. Total energy = 701.3576 kcal/mol (700.6008 without restraints) Performing minimization step: 442. Total energy = 700.6654 kcal/mol (699.9091 without restraints) Performing minimization step: 443. Total energy = 699.9754 kcal/mol (699.2197 without restraints) Performing minimization step: 444. Total energy = 699.2878 kcal/mol (698.5326 without restraints) Performing minimization step: 445. Total energy = 698.6025 kcal/mol (697.8478 without restraints) Performing minimization step: 446. Total energy = 697.9195 kcal/mol (697.1654 without restraints) Performing minimization step: 447. Total energy = 697.2388 kcal/mol (696.4853 without restraints) Performing minimization step: 448. Total energy = 696.5600 kcal/mol (695.8070 without restraints) Performing minimization step: 449. Total energy = 695.8842 kcal/mol (695.1317 without restraints) Performing minimization step: 450. Total energy = 695.2104 kcal/mol (694.4584 without restraints) Performing minimization step: 451. Total energy = 694.5388 kcal/mol (693.7874 without restraints) Performing minimization step: 452. Total energy = 693.8695 kcal/mol (693.1187 without restraints) Performing minimization step: 453. Total energy = 693.2025 kcal/mol (692.4522 without restraints) Performing minimization step: 454. Total energy = 692.5377 kcal/mol (691.7879 without restraints) Performing minimization step: 455. Total energy = 691.8750 kcal/mol (691.1257 without restraints) Performing minimization step: 456. Total energy = 691.2148 kcal/mol (690.4663 without restraints) Performing minimization step: 457. Total energy = 690.5571 kcal/mol (689.8089 without restraints) Performing minimization step: 458. Total energy = 689.9012 kcal/mol (689.1536 without restraints) Performing minimization step: 459. Total energy = 689.2475 kcal/mol (688.5004 without restraints) Performing minimization step: 460. Total energy = 688.5960 kcal/mol (687.8494 without restraints) Performing minimization step: 461. Total energy = 687.9463 kcal/mol (687.2003 without restraints) Performing minimization step: 462. Total energy = 687.2991 kcal/mol (686.5537 without restraints) Performing minimization step: 463. Total energy = 686.6540 kcal/mol (685.9091 without restraints) Performing minimization step: 464. Total energy = 686.0109 kcal/mol (685.2666 without restraints) Performing minimization step: 465. Total energy = 685.3701 kcal/mol (684.6262 without restraints) Performing minimization step: 466. Total energy = 684.7316 kcal/mol (683.9883 without restraints) Performing minimization step: 467. Total energy = 684.0952 kcal/mol (683.3525 without restraints) Performing minimization step: 468. Total energy = 683.4609 kcal/mol (682.7187 without restraints) Performing minimization step: 469. Total energy = 682.8286 kcal/mol (682.0869 without restraints) Performing minimization step: 470. Total energy = 682.1986 kcal/mol (681.4575 without restraints) Performing minimization step: 471. Total energy = 681.5707 kcal/mol (680.8301 without restraints) Performing minimization step: 472. Total energy = 680.9448 kcal/mol (680.2048 without restraints) Performing minimization step: 473. Total energy = 680.3211 kcal/mol (679.5815 without restraints) Performing minimization step: 474. Total energy = 679.6994 kcal/mol (678.9603 without restraints) Performing minimization step: 475. Total energy = 679.0796 kcal/mol (678.3411 without restraints) Performing minimization step: 476. Total energy = 678.4622 kcal/mol (677.7243 without restraints) Performing minimization step: 477. Total energy = 677.8467 kcal/mol (677.1093 without restraints) Performing minimization step: 478. Total energy = 677.2336 kcal/mol (676.4967 without restraints) Performing minimization step: 479. Total energy = 676.6221 kcal/mol (675.8856 without restraints) Performing minimization step: 480. Total energy = 676.0126 kcal/mol (675.2768 without restraints) Performing minimization step: 481. Total energy = 675.4053 kcal/mol (674.6700 without restraints) Performing minimization step: 482. Total energy = 674.7997 kcal/mol (674.0649 without restraints) Performing minimization step: 483. Total energy = 674.1964 kcal/mol (673.4622 without restraints) Performing minimization step: 484. Total energy = 673.5951 kcal/mol (672.8614 without restraints) Performing minimization step: 485. Total energy = 672.9956 kcal/mol (672.2624 without restraints) Performing minimization step: 486. Total energy = 672.3984 kcal/mol (671.6658 without restraints) Performing minimization step: 487. Total energy = 671.8030 kcal/mol (671.0709 without restraints) Performing minimization step: 488. Total energy = 671.2097 kcal/mol (670.4781 without restraints) Performing minimization step: 489. Total energy = 670.6182 kcal/mol (669.8872 without restraints) Performing minimization step: 490. Total energy = 670.0288 kcal/mol (669.2983 without restraints) Performing minimization step: 491. Total energy = 669.4413 kcal/mol (668.7113 without restraints) Performing minimization step: 492. Total energy = 668.8557 kcal/mol (668.1262 without restraints) Performing minimization step: 493. Total energy = 668.2721 kcal/mol (667.5432 without restraints) Performing minimization step: 494. Total energy = 667.6904 kcal/mol (666.9620 without restraints) Performing minimization step: 495. Total energy = 667.1108 kcal/mol (666.3829 without restraints) Performing minimization step: 496. Total energy = 666.5327 kcal/mol (665.8054 without restraints) Performing minimization step: 497. Total energy = 665.9568 kcal/mol (665.2299 without restraints) Performing minimization step: 498. Total energy = 665.3827 kcal/mol (664.6564 without restraints) Performing minimization step: 499. Total energy = 664.8102 kcal/mol (664.0844 without restraints) Performing minimization step: 500. Total energy = 664.2399 kcal/mol (663.5146 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 501. Total energy = 663.6713 kcal/mol (662.9465 without restraints) Performing minimization step: 502. Total energy = 663.1047 kcal/mol (662.3805 without restraints) Performing minimization step: 503. Total energy = 662.5398 kcal/mol (661.8161 without restraints) Performing minimization step: 504. Total energy = 661.9770 kcal/mol (661.2539 without restraints) Performing minimization step: 505. Total energy = 661.4163 kcal/mol (660.6936 without restraints) Performing minimization step: 506. Total energy = 660.8571 kcal/mol (660.1350 without restraints) Performing minimization step: 507. Total energy = 660.3000 kcal/mol (659.5784 without restraints) Performing minimization step: 508. Total energy = 659.7446 kcal/mol (659.0235 without restraints) Performing minimization step: 509. Total energy = 659.1909 kcal/mol (658.4703 without restraints) Performing minimization step: 510. Total energy = 658.6391 kcal/mol (657.9191 without restraints) Performing minimization step: 511. Total energy = 658.0887 kcal/mol (657.3691 without restraints) Performing minimization step: 512. Total energy = 657.5405 kcal/mol (656.8215 without restraints) Performing minimization step: 513. Total energy = 656.9941 kcal/mol (656.2756 without restraints) Performing minimization step: 514. Total energy = 656.4495 kcal/mol (655.7315 without restraints) Performing minimization step: 515. Total energy = 655.9064 kcal/mol (655.1890 without restraints) Performing minimization step: 516. Total energy = 655.3654 kcal/mol (654.6484 without restraints) Performing minimization step: 517. Total energy = 654.8261 kcal/mol (654.1097 without restraints) Performing minimization step: 518. Total energy = 654.2883 kcal/mol (653.5724 without restraints) Performing minimization step: 519. Total energy = 653.7523 kcal/mol (653.0369 without restraints) Performing minimization step: 520. Total energy = 653.2182 kcal/mol (652.5034 without restraints) Performing minimization step: 521. Total energy = 652.6860 kcal/mol (651.9716 without restraints) Performing minimization step: 522. Total energy = 652.1554 kcal/mol (651.4416 without restraints) Performing minimization step: 523. Total energy = 651.6266 kcal/mol (650.9133 without restraints) Performing minimization step: 524. Total energy = 651.0991 kcal/mol (650.3863 without restraints) Performing minimization step: 525. Total energy = 650.5738 kcal/mol (649.8615 without restraints) Performing minimization step: 526. Total energy = 650.0501 kcal/mol (649.3384 without restraints) Performing minimization step: 527. Total energy = 649.5282 kcal/mol (648.8169 without restraints) Performing minimization step: 528. Total energy = 649.0079 kcal/mol (648.2972 without restraints) Performing minimization step: 529. Total energy = 648.4894 kcal/mol (647.7791 without restraints) Performing minimization step: 530. Total energy = 647.9727 kcal/mol (647.2630 without restraints) Performing minimization step: 531. Total energy = 647.4575 kcal/mol (646.7483 without restraints) Performing minimization step: 532. Total energy = 646.9441 kcal/mol (646.2354 without restraints) Performing minimization step: 533. Total energy = 646.4322 kcal/mol (645.7240 without restraints) Performing minimization step: 534. Total energy = 645.9220 kcal/mol (645.2143 without restraints) Performing minimization step: 535. Total energy = 645.4135 kcal/mol (644.7064 without restraints) Performing minimization step: 536. Total energy = 644.9066 kcal/mol (644.2000 without restraints) Performing minimization step: 537. Total energy = 644.4012 kcal/mol (643.6950 without restraints) Performing minimization step: 538. Total energy = 643.8975 kcal/mol (643.1919 without restraints) Performing minimization step: 539. Total energy = 643.3956 kcal/mol (642.6904 without restraints) Performing minimization step: 540. Total energy = 642.8952 kcal/mol (642.1906 without restraints) Performing minimization step: 541. Total energy = 642.3965 kcal/mol (641.6924 without restraints) Performing minimization step: 542. Total energy = 641.8994 kcal/mol (641.1958 without restraints) Performing minimization step: 543. Total energy = 641.4039 kcal/mol (640.7008 without restraints) Performing minimization step: 544. Total energy = 640.9099 kcal/mol (640.2073 without restraints) Performing minimization step: 545. Total energy = 640.4178 kcal/mol (639.7157 without restraints) Performing minimization step: 546. Total energy = 639.9270 kcal/mol (639.2255 without restraints) Performing minimization step: 547. Total energy = 639.4379 kcal/mol (638.7368 without restraints) Performing minimization step: 548. Total energy = 638.9503 kcal/mol (638.2498 without restraints) Performing minimization step: 549. Total energy = 638.4643 kcal/mol (637.7643 without restraints) Performing minimization step: 550. Total energy = 637.9799 kcal/mol (637.2804 without restraints) Performing minimization step: 551. Total energy = 637.4970 kcal/mol (636.7980 without restraints) Performing minimization step: 552. Total energy = 637.0157 kcal/mol (636.3172 without restraints) Performing minimization step: 553. Total energy = 636.5360 kcal/mol (635.8379 without restraints) Performing minimization step: 554. Total energy = 636.0577 kcal/mol (635.3602 without restraints) Performing minimization step: 555. Total energy = 635.5810 kcal/mol (634.8840 without restraints) Performing minimization step: 556. Total energy = 635.1056 kcal/mol (634.4091 without restraints) Performing minimization step: 557. Total energy = 634.6320 kcal/mol (633.9360 without restraints) Performing minimization step: 558. Total energy = 634.1599 kcal/mol (633.4644 without restraints) Performing minimization step: 559. Total energy = 633.6893 kcal/mol (632.9943 without restraints) Performing minimization step: 560. Total energy = 633.2202 kcal/mol (632.5257 without restraints) Performing minimization step: 561. Total energy = 632.7526 kcal/mol (632.0586 without restraints) Performing minimization step: 562. Total energy = 632.2865 kcal/mol (631.5930 without restraints) Performing minimization step: 563. Total energy = 631.8217 kcal/mol (631.1287 without restraints) Performing minimization step: 564. Total energy = 631.3588 kcal/mol (630.6663 without restraints) Performing minimization step: 565. Total energy = 630.8971 kcal/mol (630.2051 without restraints) Performing minimization step: 566. Total energy = 630.4369 kcal/mol (629.7454 without restraints) Performing minimization step: 567. Total energy = 629.9782 kcal/mol (629.2872 without restraints) Performing minimization step: 568. Total energy = 629.5210 kcal/mol (628.8305 without restraints) Performing minimization step: 569. Total energy = 629.0653 kcal/mol (628.3753 without restraints) Performing minimization step: 570. Total energy = 628.6108 kcal/mol (627.9211 without restraints) Performing minimization step: 571. Total energy = 628.1578 kcal/mol (627.4688 without restraints) Performing minimization step: 572. Total energy = 627.7064 kcal/mol (627.0179 without restraints) Performing minimization step: 573. Total energy = 627.2564 kcal/mol (626.5684 without restraints) Performing minimization step: 574. Total energy = 626.8078 kcal/mol (626.1203 without restraints) Performing minimization step: 575. Total energy = 626.3607 kcal/mol (625.6737 without restraints) Performing minimization step: 576. Total energy = 625.9152 kcal/mol (625.2287 without restraints) Performing minimization step: 577. Total energy = 625.4708 kcal/mol (624.7848 without restraints) Performing minimization step: 578. Total energy = 625.0279 kcal/mol (624.3424 without restraints) Performing minimization step: 579. Total energy = 624.5864 kcal/mol (623.9014 without restraints) Performing minimization step: 580. Total energy = 624.1462 kcal/mol (623.4617 without restraints) Performing minimization step: 581. Total energy = 623.7076 kcal/mol (623.0237 without restraints) Performing minimization step: 582. Total energy = 623.2709 kcal/mol (622.5875 without restraints) Performing minimization step: 583. Total energy = 622.8352 kcal/mol (622.1521 without restraints) Performing minimization step: 584. Total energy = 622.4007 kcal/mol (621.7182 without restraints) Performing minimization step: 585. Total energy = 621.9676 kcal/mol (621.2856 without restraints) Performing minimization step: 586. Total energy = 621.5358 kcal/mol (620.8543 without restraints) Performing minimization step: 587. Total energy = 621.1054 kcal/mol (620.4244 without restraints) Performing minimization step: 588. Total energy = 620.6764 kcal/mol (619.9958 without restraints) Performing minimization step: 589. Total energy = 620.2487 kcal/mol (619.5687 without restraints) Performing minimization step: 590. Total energy = 619.8224 kcal/mol (619.1429 without restraints) Performing minimization step: 591. Total energy = 619.3975 kcal/mol (618.7184 without restraints) Performing minimization step: 592. Total energy = 618.9738 kcal/mol (618.2953 without restraints) Performing minimization step: 593. Total energy = 618.5516 kcal/mol (617.8735 without restraints) Performing minimization step: 594. Total energy = 618.1306 kcal/mol (617.4530 without restraints) Performing minimization step: 595. Total energy = 617.7110 kcal/mol (617.0339 without restraints) Performing minimization step: 596. Total energy = 617.2927 kcal/mol (616.6161 without restraints) Performing minimization step: 597. Total energy = 616.8757 kcal/mol (616.1996 without restraints) Performing minimization step: 598. Total energy = 616.4600 kcal/mol (615.7844 without restraints) Performing minimization step: 599. Total energy = 616.0456 kcal/mol (615.3705 without restraints) Performing minimization step: 600. Total energy = 615.6326 kcal/mol (614.9579 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 601. Total energy = 615.2208 kcal/mol (614.5467 without restraints) Performing minimization step: 602. Total energy = 614.8103 kcal/mol (614.1367 without restraints) Performing minimization step: 603. Total energy = 614.4012 kcal/mol (613.7280 without restraints) Performing minimization step: 604. Total energy = 613.9933 kcal/mol (613.3206 without restraints) Performing minimization step: 605. Total energy = 613.5867 kcal/mol (612.9145 without restraints) Performing minimization step: 606. Total energy = 613.1813 kcal/mol (612.5096 without restraints) Performing minimization step: 607. Total energy = 612.7772 kcal/mol (612.1060 without restraints) Performing minimization step: 608. Total energy = 612.3744 kcal/mol (611.7037 without restraints) Performing minimization step: 609. Total energy = 611.9729 kcal/mol (611.3026 without restraints) Performing minimization step: 610. Total energy = 611.5726 kcal/mol (610.9028 without restraints) Performing minimization step: 611. Total energy = 611.1734 kcal/mol (610.5040 without restraints) Performing minimization step: 612. Total energy = 610.7752 kcal/mol (610.1063 without restraints) Performing minimization step: 613. Total energy = 610.3782 kcal/mol (609.7098 without restraints) Performing minimization step: 614. Total energy = 609.9828 kcal/mol (609.3150 without restraints) Performing minimization step: 615. Total energy = 609.5888 kcal/mol (608.9214 without restraints) Performing minimization step: 616. Total energy = 609.1959 kcal/mol (608.5291 without restraints) Performing minimization step: 617. Total energy = 608.8043 kcal/mol (608.1379 without restraints) Performing minimization step: 618. Total energy = 608.4139 kcal/mol (607.7480 without restraints) Performing minimization step: 619. Total energy = 608.0247 kcal/mol (607.3593 without restraints) Performing minimization step: 620. Total energy = 607.6368 kcal/mol (606.9718 without restraints) Performing minimization step: 621. Total energy = 607.2506 kcal/mol (606.5862 without restraints) Performing minimization step: 622. Total energy = 606.8650 kcal/mol (606.2010 without restraints) Performing minimization step: 623. Total energy = 606.4806 kcal/mol (605.8172 without restraints) Performing minimization step: 624. Total energy = 606.0975 kcal/mol (605.4345 without restraints) Performing minimization step: 625. Total energy = 605.7155 kcal/mol (605.0530 without restraints) Performing minimization step: 626. Total energy = 605.3349 kcal/mol (604.6729 without restraints) Performing minimization step: 627. Total energy = 604.9553 kcal/mol (604.2937 without restraints) Performing minimization step: 628. Total energy = 604.5769 kcal/mol (603.9158 without restraints) Performing minimization step: 629. Total energy = 604.1996 kcal/mol (603.5390 without restraints) Performing minimization step: 630. Total energy = 603.8235 kcal/mol (603.1634 without restraints) Performing minimization step: 631. Total energy = 603.4486 kcal/mol (602.7890 without restraints) Performing minimization step: 632. Total energy = 603.0748 kcal/mol (602.4156 without restraints) Performing minimization step: 633. Total energy = 602.7020 kcal/mol (602.0433 without restraints) Performing minimization step: 634. Total energy = 602.3304 kcal/mol (601.6722 without restraints) Performing minimization step: 635. Total energy = 601.9601 kcal/mol (601.3023 without restraints) Performing minimization step: 636. Total energy = 601.5909 kcal/mol (600.9337 without restraints) Performing minimization step: 637. Total energy = 601.2229 kcal/mol (600.5661 without restraints) Performing minimization step: 638. Total energy = 600.8560 kcal/mol (600.1997 without restraints) Performing minimization step: 639. Total energy = 600.4901 kcal/mol (599.8343 without restraints) Performing minimization step: 640. Total energy = 600.1254 kcal/mol (599.4701 without restraints) Performing minimization step: 641. Total energy = 599.7621 kcal/mol (599.1072 without restraints) Performing minimization step: 642. Total energy = 599.3997 kcal/mol (598.7453 without restraints) Performing minimization step: 643. Total energy = 599.0384 kcal/mol (598.3845 without restraints) Performing minimization step: 644. Total energy = 598.6783 kcal/mol (598.0248 without restraints) Performing minimization step: 645. Total energy = 598.3194 kcal/mol (597.6665 without restraints) Performing minimization step: 646. Total energy = 597.9618 kcal/mol (597.3094 without restraints) Performing minimization step: 647. Total energy = 597.6050 kcal/mol (596.9530 without restraints) Performing minimization step: 648. Total energy = 597.2493 kcal/mol (596.5977 without restraints) Performing minimization step: 649. Total energy = 596.8945 kcal/mol (596.2435 without restraints) Performing minimization step: 650. Total energy = 596.5410 kcal/mol (595.8904 without restraints) Performing minimization step: 651. Total energy = 596.1886 kcal/mol (595.5385 without restraints) Performing minimization step: 652. Total energy = 595.8372 kcal/mol (595.1876 without restraints) Performing minimization step: 653. Total energy = 595.4869 kcal/mol (594.8377 without restraints) Performing minimization step: 654. Total energy = 595.1376 kcal/mol (594.4889 without restraints) Performing minimization step: 655. Total energy = 594.7894 kcal/mol (594.1412 without restraints) Performing minimization step: 656. Total energy = 594.4421 kcal/mol (593.7943 without restraints) Performing minimization step: 657. Total energy = 594.0961 kcal/mol (593.4489 without restraints) Performing minimization step: 658. Total energy = 593.7512 kcal/mol (593.1044 without restraints) Performing minimization step: 659. Total energy = 593.4073 kcal/mol (592.7609 without restraints) Performing minimization step: 660. Total energy = 593.0643 kcal/mol (592.4185 without restraints) Performing minimization step: 661. Total energy = 592.7225 kcal/mol (592.0771 without restraints) Performing minimization step: 662. Total energy = 592.3817 kcal/mol (591.7367 without restraints) Performing minimization step: 663. Total energy = 592.0419 kcal/mol (591.3974 without restraints) Performing minimization step: 664. Total energy = 591.7031 kcal/mol (591.0591 without restraints) Performing minimization step: 665. Total energy = 591.3654 kcal/mol (590.7219 without restraints) Performing minimization step: 666. Total energy = 591.0287 kcal/mol (590.3856 without restraints) Performing minimization step: 667. Total energy = 590.6928 kcal/mol (590.0502 without restraints) Performing minimization step: 668. Total energy = 590.3582 kcal/mol (589.7160 without restraints) Performing minimization step: 669. Total energy = 590.0247 kcal/mol (589.3830 without restraints) Performing minimization step: 670. Total energy = 589.6921 kcal/mol (589.0509 without restraints) Performing minimization step: 671. Total energy = 589.3605 kcal/mol (588.7197 without restraints) Performing minimization step: 672. Total energy = 589.0299 kcal/mol (588.3896 without restraints) Performing minimization step: 673. Total energy = 588.7002 kcal/mol (588.0604 without restraints) Performing minimization step: 674. Total energy = 588.3712 kcal/mol (587.7318 without restraints) Performing minimization step: 675. Total energy = 588.0436 kcal/mol (587.4047 without restraints) Performing minimization step: 676. Total energy = 587.7170 kcal/mol (587.0787 without restraints) Performing minimization step: 677. Total energy = 587.3911 kcal/mol (586.7531 without restraints) Performing minimization step: 678. Total energy = 587.0664 kcal/mol (586.4289 without restraints) Performing minimization step: 679. Total energy = 586.7429 kcal/mol (586.1059 without restraints) Performing minimization step: 680. Total energy = 586.4201 kcal/mol (585.7834 without restraints) Performing minimization step: 681. Total energy = 586.0983 kcal/mol (585.4622 without restraints) Performing minimization step: 682. Total energy = 585.7775 kcal/mol (585.1419 without restraints) Performing minimization step: 683. Total energy = 585.4578 kcal/mol (584.8226 without restraints) Performing minimization step: 684. Total energy = 585.1389 kcal/mol (584.5042 without restraints) Performing minimization step: 685. Total energy = 584.8210 kcal/mol (584.1867 without restraints) Performing minimization step: 686. Total energy = 584.5040 kcal/mol (583.8702 without restraints) Performing minimization step: 687. Total energy = 584.1881 kcal/mol (583.5547 without restraints) Performing minimization step: 688. Total energy = 583.8731 kcal/mol (583.2401 without restraints) Performing minimization step: 689. Total energy = 583.5590 kcal/mol (582.9265 without restraints) Performing minimization step: 690. Total energy = 583.2459 kcal/mol (582.6139 without restraints) Performing minimization step: 691. Total energy = 582.9337 kcal/mol (582.3022 without restraints) Performing minimization step: 692. Total energy = 582.6226 kcal/mol (581.9916 without restraints) Performing minimization step: 693. Total energy = 582.3121 kcal/mol (581.6815 without restraints) Performing minimization step: 694. Total energy = 582.0027 kcal/mol (581.3726 without restraints) Performing minimization step: 695. Total energy = 581.6947 kcal/mol (581.0650 without restraints) Performing minimization step: 696. Total energy = 581.3873 kcal/mol (580.7581 without restraints) Performing minimization step: 697. Total energy = 581.0808 kcal/mol (580.4521 without restraints) Performing minimization step: 698. Total energy = 580.7753 kcal/mol (580.1469 without restraints) Performing minimization step: 699. Total energy = 580.4707 kcal/mol (579.8428 without restraints) Performing minimization step: 700. Total energy = 580.1668 kcal/mol (579.5394 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 701. Total energy = 579.8638 kcal/mol (579.2369 without restraints) Performing minimization step: 702. Total energy = 579.5618 kcal/mol (578.9353 without restraints) Performing minimization step: 703. Total energy = 579.2607 kcal/mol (578.6348 without restraints) Performing minimization step: 704. Total energy = 578.9608 kcal/mol (578.3351 without restraints) Performing minimization step: 705. Total energy = 578.6615 kcal/mol (578.0365 without restraints) Performing minimization step: 706. Total energy = 578.3632 kcal/mol (577.7384 without restraints) Performing minimization step: 707. Total energy = 578.0656 kcal/mol (577.4414 without restraints) Performing minimization step: 708. Total energy = 577.7689 kcal/mol (577.1451 without restraints) Performing minimization step: 709. Total energy = 577.4733 kcal/mol (576.8499 without restraints) Performing minimization step: 710. Total energy = 577.1784 kcal/mol (576.5554 without restraints) Performing minimization step: 711. Total energy = 576.8842 kcal/mol (576.2618 without restraints) Performing minimization step: 712. Total energy = 576.5910 kcal/mol (575.9690 without restraints) Performing minimization step: 713. Total energy = 576.2987 kcal/mol (575.6771 without restraints) Performing minimization step: 714. Total energy = 576.0076 kcal/mol (575.3866 without restraints) Performing minimization step: 715. Total energy = 575.7171 kcal/mol (575.0964 without restraints) Performing minimization step: 716. Total energy = 575.4276 kcal/mol (574.8073 without restraints) Performing minimization step: 717. Total energy = 575.1387 kcal/mol (574.5189 without restraints) Performing minimization step: 718. Total energy = 574.8507 kcal/mol (574.2313 without restraints) Performing minimization step: 719. Total energy = 574.5635 kcal/mol (573.9446 without restraints) Performing minimization step: 720. Total energy = 574.2772 kcal/mol (573.6587 without restraints) Performing minimization step: 721. Total energy = 573.9919 kcal/mol (573.3739 without restraints) Performing minimization step: 722. Total energy = 573.7072 kcal/mol (573.0897 without restraints) Performing minimization step: 723. Total energy = 573.4234 kcal/mol (572.8063 without restraints) Performing minimization step: 724. Total energy = 573.1403 kcal/mol (572.5236 without restraints) Performing minimization step: 725. Total energy = 572.8582 kcal/mol (572.2419 without restraints) Performing minimization step: 726. Total energy = 572.5769 kcal/mol (571.9611 without restraints) Performing minimization step: 727. Total energy = 572.2964 kcal/mol (571.6811 without restraints) Performing minimization step: 728. Total energy = 572.0168 kcal/mol (571.4019 without restraints) Performing minimization step: 729. Total energy = 571.7380 kcal/mol (571.1235 without restraints) Performing minimization step: 730. Total energy = 571.4600 kcal/mol (570.8460 without restraints) Performing minimization step: 731. Total energy = 571.1833 kcal/mol (570.5697 without restraints) Performing minimization step: 732. Total energy = 570.9067 kcal/mol (570.2936 without restraints) Performing minimization step: 733. Total energy = 570.6312 kcal/mol (570.0185 without restraints) Performing minimization step: 734. Total energy = 570.3564 kcal/mol (569.7442 without restraints) Performing minimization step: 735. Total energy = 570.0826 kcal/mol (569.4709 without restraints) Performing minimization step: 736. Total energy = 569.8096 kcal/mol (569.1982 without restraints) Performing minimization step: 737. Total energy = 569.5370 kcal/mol (568.9261 without restraints) Performing minimization step: 738. Total energy = 569.2658 kcal/mol (568.6553 without restraints) Performing minimization step: 739. Total energy = 568.9951 kcal/mol (568.3850 without restraints) Performing minimization step: 740. Total energy = 568.7251 kcal/mol (568.1155 without restraints) Performing minimization step: 741. Total energy = 568.4561 kcal/mol (567.8470 without restraints) Performing minimization step: 742. Total energy = 568.1878 kcal/mol (567.5791 without restraints) Performing minimization step: 743. Total energy = 567.9202 kcal/mol (567.3119 without restraints) Performing minimization step: 744. Total energy = 567.6534 kcal/mol (567.0455 without restraints) Performing minimization step: 745. Total energy = 567.3871 kcal/mol (566.7796 without restraints) Performing minimization step: 746. Total energy = 567.1218 kcal/mol (566.5148 without restraints) Performing minimization step: 747. Total energy = 566.8574 kcal/mol (566.2508 without restraints) Performing minimization step: 748. Total energy = 566.5934 kcal/mol (565.9873 without restraints) Performing minimization step: 749. Total energy = 566.3305 kcal/mol (565.7247 without restraints) Performing minimization step: 750. Total energy = 566.0685 kcal/mol (565.4632 without restraints) Performing minimization step: 751. Total energy = 565.8071 kcal/mol (565.2023 without restraints) Performing minimization step: 752. Total energy = 565.5469 kcal/mol (564.9425 without restraints) Performing minimization step: 753. Total energy = 565.2870 kcal/mol (564.6830 without restraints) Performing minimization step: 754. Total energy = 565.0280 kcal/mol (564.4246 without restraints) Performing minimization step: 755. Total energy = 564.7700 kcal/mol (564.1668 without restraints) Performing minimization step: 756. Total energy = 564.5123 kcal/mol (563.9096 without restraints) Performing minimization step: 757. Total energy = 564.2554 kcal/mol (563.6531 without restraints) Performing minimization step: 758. Total energy = 563.9994 kcal/mol (563.3975 without restraints) Performing minimization step: 759. Total energy = 563.7440 kcal/mol (563.1426 without restraints) Performing minimization step: 760. Total energy = 563.4893 kcal/mol (562.8883 without restraints) Performing minimization step: 761. Total energy = 563.2353 kcal/mol (562.6348 without restraints) Performing minimization step: 762. Total energy = 562.9821 kcal/mol (562.3820 without restraints) Performing minimization step: 763. Total energy = 562.7297 kcal/mol (562.1300 without restraints) Performing minimization step: 764. Total energy = 562.4778 kcal/mol (561.8784 without restraints) Performing minimization step: 765. Total energy = 562.2265 kcal/mol (561.6277 without restraints) Performing minimization step: 766. Total energy = 561.9762 kcal/mol (561.3778 without restraints) Performing minimization step: 767. Total energy = 561.7266 kcal/mol (561.1287 without restraints) Performing minimization step: 768. Total energy = 561.4778 kcal/mol (560.8802 without restraints) Performing minimization step: 769. Total energy = 561.2297 kcal/mol (560.6325 without restraints) Performing minimization step: 770. Total energy = 560.9826 kcal/mol (560.3859 without restraints) Performing minimization step: 771. Total energy = 560.7359 kcal/mol (560.1396 without restraints) Performing minimization step: 772. Total energy = 560.4901 kcal/mol (559.8943 without restraints) Performing minimization step: 773. Total energy = 560.2449 kcal/mol (559.6494 without restraints) Performing minimization step: 774. Total energy = 560.0003 kcal/mol (559.4052 without restraints) Performing minimization step: 775. Total energy = 559.7564 kcal/mol (559.1618 without restraints) Performing minimization step: 776. Total energy = 559.5130 kcal/mol (558.9188 without restraints) Performing minimization step: 777. Total energy = 559.2705 kcal/mol (558.6769 without restraints) Performing minimization step: 778. Total energy = 559.0289 kcal/mol (558.4355 without restraints) Performing minimization step: 779. Total energy = 558.7878 kcal/mol (558.1948 without restraints) Performing minimization step: 780. Total energy = 558.5474 kcal/mol (557.9549 without restraints) Performing minimization step: 781. Total energy = 558.3076 kcal/mol (557.7155 without restraints) Performing minimization step: 782. Total energy = 558.0686 kcal/mol (557.4769 without restraints) Performing minimization step: 783. Total energy = 557.8303 kcal/mol (557.2390 without restraints) Performing minimization step: 784. Total energy = 557.5929 kcal/mol (557.0022 without restraints) Performing minimization step: 785. Total energy = 557.3560 kcal/mol (556.7656 without restraints) Performing minimization step: 786. Total energy = 557.1198 kcal/mol (556.5298 without restraints) Performing minimization step: 787. Total energy = 556.8841 kcal/mol (556.2945 without restraints) Performing minimization step: 788. Total energy = 556.6491 kcal/mol (556.0600 without restraints) Performing minimization step: 789. Total energy = 556.4150 kcal/mol (555.8263 without restraints) Performing minimization step: 790. Total energy = 556.1814 kcal/mol (555.5930 without restraints) Performing minimization step: 791. Total energy = 555.9482 kcal/mol (555.3603 without restraints) Performing minimization step: 792. Total energy = 555.7160 kcal/mol (555.1286 without restraints) Performing minimization step: 793. Total energy = 555.4843 kcal/mol (554.8972 without restraints) Performing minimization step: 794. Total energy = 555.2533 kcal/mol (554.6666 without restraints) Performing minimization step: 795. Total energy = 555.0229 kcal/mol (554.4367 without restraints) Performing minimization step: 796. Total energy = 554.7933 kcal/mol (554.2074 without restraints) Performing minimization step: 797. Total energy = 554.5643 kcal/mol (553.9788 without restraints) Performing minimization step: 798. Total energy = 554.3357 kcal/mol (553.7507 without restraints) Performing minimization step: 799. Total energy = 554.1080 kcal/mol (553.5234 without restraints) Performing minimization step: 800. Total energy = 553.8810 kcal/mol (553.2968 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 801. Total energy = 553.6545 kcal/mol (553.0708 without restraints) Performing minimization step: 802. Total energy = 553.4286 kcal/mol (552.8452 without restraints) Performing minimization step: 803. Total energy = 553.2034 kcal/mol (552.6205 without restraints) Performing minimization step: 804. Total energy = 552.9789 kcal/mol (552.3964 without restraints) Performing minimization step: 805. Total energy = 552.7552 kcal/mol (552.1731 without restraints) Performing minimization step: 806. Total energy = 552.5320 kcal/mol (551.9502 without restraints) Performing minimization step: 807. Total energy = 552.3094 kcal/mol (551.7281 without restraints) Performing minimization step: 808. Total energy = 552.0876 kcal/mol (551.5068 without restraints) Performing minimization step: 809. Total energy = 551.8663 kcal/mol (551.2858 without restraints) Performing minimization step: 810. Total energy = 551.6455 kcal/mol (551.0654 without restraints) Performing minimization step: 811. Total energy = 551.4252 kcal/mol (550.8455 without restraints) Performing minimization step: 812. Total energy = 551.2058 kcal/mol (550.6265 without restraints) Performing minimization step: 813. Total energy = 550.9869 kcal/mol (550.4080 without restraints) Performing minimization step: 814. Total energy = 550.7686 kcal/mol (550.1902 without restraints) Performing minimization step: 815. Total energy = 550.5510 kcal/mol (549.9729 without restraints) Performing minimization step: 816. Total energy = 550.3340 kcal/mol (549.7563 without restraints) Performing minimization step: 817. Total energy = 550.1180 kcal/mol (549.5407 without restraints) Performing minimization step: 818. Total energy = 549.9025 kcal/mol (549.3256 without restraints) Performing minimization step: 819. Total energy = 549.6873 kcal/mol (549.1108 without restraints) Performing minimization step: 820. Total energy = 549.4729 kcal/mol (548.8969 without restraints) Performing minimization step: 821. Total energy = 549.2590 kcal/mol (548.6833 without restraints) Performing minimization step: 822. Total energy = 549.0455 kcal/mol (548.4703 without restraints) Performing minimization step: 823. Total energy = 548.8328 kcal/mol (548.2579 without restraints) Performing minimization step: 824. Total energy = 548.6206 kcal/mol (548.0462 without restraints) Performing minimization step: 825. Total energy = 548.4090 kcal/mol (547.8350 without restraints) Performing minimization step: 826. Total energy = 548.1980 kcal/mol (547.6244 without restraints) Performing minimization step: 827. Total energy = 547.9876 kcal/mol (547.4144 without restraints) Performing minimization step: 828. Total energy = 547.7778 kcal/mol (547.2050 without restraints) Performing minimization step: 829. Total energy = 547.5689 kcal/mol (546.9964 without restraints) Performing minimization step: 830. Total energy = 547.3601 kcal/mol (546.7880 without restraints) Performing minimization step: 831. Total energy = 547.1520 kcal/mol (546.5803 without restraints) Performing minimization step: 832. Total energy = 546.9445 kcal/mol (546.3733 without restraints) Performing minimization step: 833. Total energy = 546.7380 kcal/mol (546.1671 without restraints) Performing minimization step: 834. Total energy = 546.5319 kcal/mol (545.9614 without restraints) Performing minimization step: 835. Total energy = 546.3262 kcal/mol (545.7561 without restraints) Performing minimization step: 836. Total energy = 546.1210 kcal/mol (545.5513 without restraints) Performing minimization step: 837. Total energy = 545.9164 kcal/mol (545.3471 without restraints) Performing minimization step: 838. Total energy = 545.7124 kcal/mol (545.1435 without restraints) Performing minimization step: 839. Total energy = 545.5092 kcal/mol (544.9407 without restraints) Performing minimization step: 840. Total energy = 545.3063 kcal/mol (544.7382 without restraints) Performing minimization step: 841. Total energy = 545.1042 kcal/mol (544.5365 without restraints) Performing minimization step: 842. Total energy = 544.9025 kcal/mol (544.3352 without restraints) Performing minimization step: 843. Total energy = 544.7013 kcal/mol (544.1344 without restraints) Performing minimization step: 844. Total energy = 544.5007 kcal/mol (543.9341 without restraints) Performing minimization step: 845. Total energy = 544.3005 kcal/mol (543.7344 without restraints) Performing minimization step: 846. Total energy = 544.1013 kcal/mol (543.5356 without restraints) Performing minimization step: 847. Total energy = 543.9024 kcal/mol (543.3370 without restraints) Performing minimization step: 848. Total energy = 543.7038 kcal/mol (543.1387 without restraints) Performing minimization step: 849. Total energy = 543.5060 kcal/mol (542.9415 without restraints) Performing minimization step: 850. Total energy = 543.3087 kcal/mol (542.7445 without restraints) Performing minimization step: 851. Total energy = 543.1122 kcal/mol (542.5484 without restraints) Performing minimization step: 852. Total energy = 542.9159 kcal/mol (542.3525 without restraints) Performing minimization step: 853. Total energy = 542.7203 kcal/mol (542.1573 without restraints) Performing minimization step: 854. Total energy = 542.5252 kcal/mol (541.9625 without restraints) Performing minimization step: 855. Total energy = 542.3308 kcal/mol (541.7686 without restraints) Performing minimization step: 856. Total energy = 542.1369 kcal/mol (541.5751 without restraints) Performing minimization step: 857. Total energy = 541.9434 kcal/mol (541.3820 without restraints) Performing minimization step: 858. Total energy = 541.7505 kcal/mol (541.1894 without restraints) Performing minimization step: 859. Total energy = 541.5578 kcal/mol (540.9971 without restraints) Performing minimization step: 860. Total energy = 541.3663 kcal/mol (540.8059 without restraints) Performing minimization step: 861. Total energy = 541.1747 kcal/mol (540.6147 without restraints) Performing minimization step: 862. Total energy = 540.9838 kcal/mol (540.4243 without restraints) Performing minimization step: 863. Total energy = 540.7935 kcal/mol (540.2343 without restraints) Performing minimization step: 864. Total energy = 540.6037 kcal/mol (540.0449 without restraints) Performing minimization step: 865. Total energy = 540.4144 kcal/mol (539.8560 without restraints) Performing minimization step: 866. Total energy = 540.2256 kcal/mol (539.6676 without restraints) Performing minimization step: 867. Total energy = 540.0374 kcal/mol (539.4798 without restraints) Performing minimization step: 868. Total energy = 539.8497 kcal/mol (539.2924 without restraints) Performing minimization step: 869. Total energy = 539.6623 kcal/mol (539.1054 without restraints) Performing minimization step: 870. Total energy = 539.4755 kcal/mol (538.9190 without restraints) Performing minimization step: 871. Total energy = 539.2894 kcal/mol (538.7333 without restraints) Performing minimization step: 872. Total energy = 539.1037 kcal/mol (538.5480 without restraints) Performing minimization step: 873. Total energy = 538.9185 kcal/mol (538.3632 without restraints) Performing minimization step: 874. Total energy = 538.7339 kcal/mol (538.1789 without restraints) Performing minimization step: 875. Total energy = 538.5496 kcal/mol (537.9949 without restraints) Performing minimization step: 876. Total energy = 538.3659 kcal/mol (537.8117 without restraints) Performing minimization step: 877. Total energy = 538.1828 kcal/mol (537.6290 without restraints) Performing minimization step: 878. Total energy = 537.9999 kcal/mol (537.4465 without restraints) Performing minimization step: 879. Total energy = 537.8173 kcal/mol (537.2642 without restraints) Performing minimization step: 880. Total energy = 537.6357 kcal/mol (537.0830 without restraints) Performing minimization step: 881. Total energy = 537.4545 kcal/mol (536.9022 without restraints) Performing minimization step: 882. Total energy = 537.2739 kcal/mol (536.7219 without restraints) Performing minimization step: 883. Total energy = 537.0937 kcal/mol (536.5421 without restraints) Performing minimization step: 884. Total energy = 536.9139 kcal/mol (536.3627 without restraints) Performing minimization step: 885. Total energy = 536.7351 kcal/mol (536.1843 without restraints) Performing minimization step: 886. Total energy = 536.5566 kcal/mol (536.0062 without restraints) Performing minimization step: 887. Total energy = 536.3788 kcal/mol (535.8287 without restraints) Performing minimization step: 888. Total energy = 536.2011 kcal/mol (535.6513 without restraints) Performing minimization step: 889. Total energy = 536.0236 kcal/mol (535.4743 without restraints) Performing minimization step: 890. Total energy = 535.8471 kcal/mol (535.2983 without restraints) Performing minimization step: 891. Total energy = 535.6710 kcal/mol (535.1224 without restraints) Performing minimization step: 892. Total energy = 535.4954 kcal/mol (534.9472 without restraints) Performing minimization step: 893. Total energy = 535.3202 kcal/mol (534.7725 without restraints) Performing minimization step: 894. Total energy = 535.1454 kcal/mol (534.5980 without restraints) Performing minimization step: 895. Total energy = 534.9711 kcal/mol (534.4240 without restraints) Performing minimization step: 896. Total energy = 534.7972 kcal/mol (534.2504 without restraints) Performing minimization step: 897. Total energy = 534.6237 kcal/mol (534.0774 without restraints) Performing minimization step: 898. Total energy = 534.4510 kcal/mol (533.9050 without restraints) Performing minimization step: 899. Total energy = 534.2785 kcal/mol (533.7328 without restraints) Performing minimization step: 900. Total energy = 534.1063 kcal/mol (533.5610 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 901. Total energy = 533.9347 kcal/mol (533.3898 without restraints) Performing minimization step: 902. Total energy = 533.7636 kcal/mol (533.2191 without restraints) Performing minimization step: 903. Total energy = 533.5930 kcal/mol (533.0487 without restraints) Performing minimization step: 904. Total energy = 533.4227 kcal/mol (532.8789 without restraints) Performing minimization step: 905. Total energy = 533.2530 kcal/mol (532.7095 without restraints) Performing minimization step: 906. Total energy = 533.0837 kcal/mol (532.5406 without restraints) Performing minimization step: 907. Total energy = 532.9148 kcal/mol (532.3721 without restraints) Performing minimization step: 908. Total energy = 532.7464 kcal/mol (532.2040 without restraints) Performing minimization step: 909. Total energy = 532.5785 kcal/mol (532.0365 without restraints) Performing minimization step: 910. Total energy = 532.4110 kcal/mol (531.8694 without restraints) Performing minimization step: 911. Total energy = 532.2438 kcal/mol (531.7025 without restraints) Performing minimization step: 912. Total energy = 532.0770 kcal/mol (531.5361 without restraints) Performing minimization step: 913. Total energy = 531.9110 kcal/mol (531.3705 without restraints) Performing minimization step: 914. Total energy = 531.7453 kcal/mol (531.2052 without restraints) Performing minimization step: 915. Total energy = 531.5801 kcal/mol (531.0403 without restraints) Performing minimization step: 916. Total energy = 531.4151 kcal/mol (530.8756 without restraints) Performing minimization step: 917. Total energy = 531.2503 kcal/mol (530.7112 without restraints) Performing minimization step: 918. Total energy = 531.0866 kcal/mol (530.5479 without restraints) Performing minimization step: 919. Total energy = 530.9229 kcal/mol (530.3846 without restraints) Performing minimization step: 920. Total energy = 530.7599 kcal/mol (530.2219 without restraints) Performing minimization step: 921. Total energy = 530.5973 kcal/mol (530.0597 without restraints) Performing minimization step: 922. Total energy = 530.4352 kcal/mol (529.8979 without restraints) Performing minimization step: 923. Total energy = 530.2732 kcal/mol (529.7363 without restraints) Performing minimization step: 924. Total energy = 530.1121 kcal/mol (529.5756 without restraints) Performing minimization step: 925. Total energy = 529.9512 kcal/mol (529.4150 without restraints) Performing minimization step: 926. Total energy = 529.7907 kcal/mol (529.2549 without restraints) Performing minimization step: 927. Total energy = 529.6305 kcal/mol (529.0950 without restraints) Performing minimization step: 928. Total energy = 529.4709 kcal/mol (528.9358 without restraints) Performing minimization step: 929. Total energy = 529.3118 kcal/mol (528.7770 without restraints) Performing minimization step: 930. Total energy = 529.1530 kcal/mol (528.6186 without restraints) Performing minimization step: 931. Total energy = 528.9947 kcal/mol (528.4607 without restraints) Performing minimization step: 932. Total energy = 528.8368 kcal/mol (528.3031 without restraints) Performing minimization step: 933. Total energy = 528.6794 kcal/mol (528.1460 without restraints) Performing minimization step: 934. Total energy = 528.5222 kcal/mol (527.9891 without restraints) Performing minimization step: 935. Total energy = 528.3654 kcal/mol (527.8328 without restraints) Performing minimization step: 936. Total energy = 528.2091 kcal/mol (527.6769 without restraints) Performing minimization step: 937. Total energy = 528.0531 kcal/mol (527.5211 without restraints) Performing minimization step: 938. Total energy = 527.8977 kcal/mol (527.3661 without restraints) Performing minimization step: 939. Total energy = 527.7431 kcal/mol (527.2119 without restraints) Performing minimization step: 940. Total energy = 527.5885 kcal/mol (527.0576 without restraints) Performing minimization step: 941. Total energy = 527.4343 kcal/mol (526.9037 without restraints) Performing minimization step: 942. Total energy = 527.2805 kcal/mol (526.7503 without restraints) Performing minimization step: 943. Total energy = 527.1271 kcal/mol (526.5973 without restraints) Performing minimization step: 944. Total energy = 526.9741 kcal/mol (526.4446 without restraints) Performing minimization step: 945. Total energy = 526.8213 kcal/mol (526.2922 without restraints) Performing minimization step: 946. Total energy = 526.6691 kcal/mol (526.1403 without restraints) Performing minimization step: 947. Total energy = 526.5177 kcal/mol (525.9893 without restraints) Performing minimization step: 948. Total energy = 526.3663 kcal/mol (525.8382 without restraints) Performing minimization step: 949. Total energy = 526.2153 kcal/mol (525.6875 without restraints) Performing minimization step: 950. Total energy = 526.0647 kcal/mol (525.5372 without restraints) Performing minimization step: 951. Total energy = 525.9145 kcal/mol (525.3876 without restraints) Performing minimization step: 952. Total energy = 525.7648 kcal/mol (525.2381 without restraints) Performing minimization step: 953. Total energy = 525.6151 kcal/mol (525.0888 without restraints) Performing minimization step: 954. Total energy = 525.4661 kcal/mol (524.9401 without restraints) Performing minimization step: 955. Total energy = 525.3175 kcal/mol (524.7918 without restraints) Performing minimization step: 956. Total energy = 525.1692 kcal/mol (524.6439 without restraints) Performing minimization step: 957. Total energy = 525.0211 kcal/mol (524.4962 without restraints) Performing minimization step: 958. Total energy = 524.8736 kcal/mol (524.3490 without restraints) Performing minimization step: 959. Total energy = 524.7265 kcal/mol (524.2022 without restraints) Performing minimization step: 960. Total energy = 524.5795 kcal/mol (524.0554 without restraints) Performing minimization step: 961. Total energy = 524.4329 kcal/mol (523.9093 without restraints) Performing minimization step: 962. Total energy = 524.2867 kcal/mol (523.7635 without restraints) Performing minimization step: 963. Total energy = 524.1411 kcal/mol (523.6182 without restraints) Performing minimization step: 964. Total energy = 523.9958 kcal/mol (523.4732 without restraints) Performing minimization step: 965. Total energy = 523.8509 kcal/mol (523.3287 without restraints) Performing minimization step: 966. Total energy = 523.7064 kcal/mol (523.1845 without restraints) Performing minimization step: 967. Total energy = 523.5622 kcal/mol (523.0407 without restraints) Performing minimization step: 968. Total energy = 523.4186 kcal/mol (522.8974 without restraints) Performing minimization step: 969. Total energy = 523.2752 kcal/mol (522.7544 without restraints) Performing minimization step: 970. Total energy = 523.1320 kcal/mol (522.6115 without restraints) Performing minimization step: 971. Total energy = 522.9893 kcal/mol (522.4691 without restraints) Performing minimization step: 972. Total energy = 522.8470 kcal/mol (522.3272 without restraints) Performing minimization step: 973. Total energy = 522.7050 kcal/mol (522.1855 without restraints) Performing minimization step: 974. Total energy = 522.5637 kcal/mol (522.0447 without restraints) Performing minimization step: 975. Total energy = 522.4227 kcal/mol (521.9038 without restraints) Performing minimization step: 976. Total energy = 522.2818 kcal/mol (521.7633 without restraints) Performing minimization step: 977. Total energy = 522.1411 kcal/mol (521.6230 without restraints) Performing minimization step: 978. Total energy = 522.0012 kcal/mol (521.4834 without restraints) Performing minimization step: 979. Total energy = 521.8616 kcal/mol (521.3441 without restraints) Performing minimization step: 980. Total energy = 521.7221 kcal/mol (521.2050 without restraints) Performing minimization step: 981. Total energy = 521.5833 kcal/mol (521.0664 without restraints) Performing minimization step: 982. Total energy = 521.4445 kcal/mol (520.9281 without restraints) Performing minimization step: 983. Total energy = 521.3061 kcal/mol (520.7900 without restraints) Performing minimization step: 984. Total energy = 521.1679 kcal/mol (520.6521 without restraints) Performing minimization step: 985. Total energy = 521.0302 kcal/mol (520.5147 without restraints) Performing minimization step: 986. Total energy = 520.8927 kcal/mol (520.3774 without restraints) Performing minimization step: 987. Total energy = 520.7558 kcal/mol (520.2410 without restraints) Performing minimization step: 988. Total energy = 520.6193 kcal/mol (520.1048 without restraints) Performing minimization step: 989. Total energy = 520.4829 kcal/mol (519.9687 without restraints) Performing minimization step: 990. Total energy = 520.3469 kcal/mol (519.8331 without restraints) Performing minimization step: 991. Total energy = 520.2113 kcal/mol (519.6978 without restraints) Performing minimization step: 992. Total energy = 520.0760 kcal/mol (519.5627 without restraints) Performing minimization step: 993. Total energy = 519.9409 kcal/mol (519.4281 without restraints) Performing minimization step: 994. Total energy = 519.8060 kcal/mol (519.2935 without restraints) Performing minimization step: 995. Total energy = 519.6714 kcal/mol (519.1593 without restraints) Performing minimization step: 996. Total energy = 519.5375 kcal/mol (519.0257 without restraints) Performing minimization step: 997. Total energy = 519.4038 kcal/mol (518.8923 without restraints) Performing minimization step: 998. Total energy = 519.2706 kcal/mol (518.7595 without restraints) Performing minimization step: 999. Total energy = 519.1379 kcal/mol (518.6270 without restraints) Performing minimization step: 1000. Total energy = 519.0053 kcal/mol (518.4949 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 518.8731 kcal/mol (518.3629 without restraints) Performing minimization step: 1002. Total energy = 518.7411 kcal/mol (518.2312 without restraints) Performing minimization step: 1003. Total energy = 518.6094 kcal/mol (518.0999 without restraints) Performing minimization step: 1004. Total energy = 518.4780 kcal/mol (517.9688 without restraints) Performing minimization step: 1005. Total energy = 518.3470 kcal/mol (517.8381 without restraints) Performing minimization step: 1006. Total energy = 518.2162 kcal/mol (517.7077 without restraints) Performing minimization step: 1007. Total energy = 518.0858 kcal/mol (517.5776 without restraints) Performing minimization step: 1008. Total energy = 517.9559 kcal/mol (517.4480 without restraints) Performing minimization step: 1009. Total energy = 517.8262 kcal/mol (517.3187 without restraints) Performing minimization step: 1010. Total energy = 517.6969 kcal/mol (517.1896 without restraints) Performing minimization step: 1011. Total energy = 517.5677 kcal/mol (517.0608 without restraints) Performing minimization step: 1012. Total energy = 517.4386 kcal/mol (516.9320 without restraints) Performing minimization step: 1013. Total energy = 517.3101 kcal/mol (516.8038 without restraints) Performing minimization step: 1014. Total energy = 517.1814 kcal/mol (516.6755 without restraints) Performing minimization step: 1015. Total energy = 517.0537 kcal/mol (516.5481 without restraints) Performing minimization step: 1016. Total energy = 516.9261 kcal/mol (516.4208 without restraints) Performing minimization step: 1017. Total energy = 516.7986 kcal/mol (516.2936 without restraints) Performing minimization step: 1018. Total energy = 516.6716 kcal/mol (516.1669 without restraints) Performing minimization step: 1019. Total energy = 516.5449 kcal/mol (516.0406 without restraints) Performing minimization step: 1020. Total energy = 516.4185 kcal/mol (515.9145 without restraints) Performing minimization step: 1021. Total energy = 516.2924 kcal/mol (515.7887 without restraints) Performing minimization step: 1022. Total energy = 516.1667 kcal/mol (515.6633 without restraints) Performing minimization step: 1023. Total energy = 516.0411 kcal/mol (515.5380 without restraints) Performing minimization step: 1024. Total energy = 515.9159 kcal/mol (515.4131 without restraints) Performing minimization step: 1025. Total energy = 515.7910 kcal/mol (515.2886 without restraints) Performing minimization step: 1026. Total energy = 515.6664 kcal/mol (515.1643 without restraints) Performing minimization step: 1027. Total energy = 515.5421 kcal/mol (515.0403 without restraints) Performing minimization step: 1028. Total energy = 515.4183 kcal/mol (514.9169 without restraints) Performing minimization step: 1029. Total energy = 515.2946 kcal/mol (514.7935 without restraints) Performing minimization step: 1030. Total energy = 515.1714 kcal/mol (514.6706 without restraints) Performing minimization step: 1031. Total energy = 515.0482 kcal/mol (514.5475 without restraints) Performing minimization step: 1032. Total energy = 514.9252 kcal/mol (514.4250 without restraints) Performing minimization step: 1033. Total energy = 514.8027 kcal/mol (514.3028 without restraints) Performing minimization step: 1034. Total energy = 514.6802 kcal/mol (514.1806 without restraints) Performing minimization step: 1035. Total energy = 514.5581 kcal/mol (514.0589 without restraints) Performing minimization step: 1036. Total energy = 514.4364 kcal/mol (513.9375 without restraints) Performing minimization step: 1037. Total energy = 514.3149 kcal/mol (513.8162 without restraints) Performing minimization step: 1038. Total energy = 514.1937 kcal/mol (513.6954 without restraints) Performing minimization step: 1039. Total energy = 514.0728 kcal/mol (513.5748 without restraints) Performing minimization step: 1040. Total energy = 513.9523 kcal/mol (513.4546 without restraints) Performing minimization step: 1041. Total energy = 513.8319 kcal/mol (513.3345 without restraints) Performing minimization step: 1042. Total energy = 513.7120 kcal/mol (513.2150 without restraints) Performing minimization step: 1043. Total energy = 513.5923 kcal/mol (513.0956 without restraints) Performing minimization step: 1044. Total energy = 513.4727 kcal/mol (512.9762 without restraints) Performing minimization step: 1045. Total energy = 513.3531 kcal/mol (512.8569 without restraints) Performing minimization step: 1046. Total energy = 513.2341 kcal/mol (512.7383 without restraints) Performing minimization step: 1047. Total energy = 513.1154 kcal/mol (512.6199 without restraints) Performing minimization step: 1048. Total energy = 512.9971 kcal/mol (512.5018 without restraints) Performing minimization step: 1049. Total energy = 512.8792 kcal/mol (512.3842 without restraints) Performing minimization step: 1050. Total energy = 512.7613 kcal/mol (512.2666 without restraints) Performing minimization step: 1051. Total energy = 512.6437 kcal/mol (512.1494 without restraints) Performing minimization step: 1052. Total energy = 512.5264 kcal/mol (512.0324 without restraints) Performing minimization step: 1053. Total energy = 512.4093 kcal/mol (511.9156 without restraints) Performing minimization step: 1054. Total energy = 512.2921 kcal/mol (511.7987 without restraints) Performing minimization step: 1055. Total energy = 512.1754 kcal/mol (511.6823 without restraints) Performing minimization step: 1056. Total energy = 512.0591 kcal/mol (511.5663 without restraints) Performing minimization step: 1057. Total energy = 511.9431 kcal/mol (511.4506 without restraints) Performing minimization step: 1058. Total energy = 511.8274 kcal/mol (511.3352 without restraints) Performing minimization step: 1059. Total energy = 511.7119 kcal/mol (511.2200 without restraints) Performing minimization step: 1060. Total energy = 511.5966 kcal/mol (511.1051 without restraints) Performing minimization step: 1061. Total energy = 511.4816 kcal/mol (510.9904 without restraints) Performing minimization step: 1062. Total energy = 511.3669 kcal/mol (510.8759 without restraints) Performing minimization step: 1063. Total energy = 511.2526 kcal/mol (510.7620 without restraints) Performing minimization step: 1064. Total energy = 511.1383 kcal/mol (510.6478 without restraints) Performing minimization step: 1065. Total energy = 511.0240 kcal/mol (510.5339 without restraints) Performing minimization step: 1066. Total energy = 510.9102 kcal/mol (510.4205 without restraints) Performing minimization step: 1067. Total energy = 510.7968 kcal/mol (510.3073 without restraints) Performing minimization step: 1068. Total energy = 510.6835 kcal/mol (510.1944 without restraints) Performing minimization step: 1069. Total energy = 510.5705 kcal/mol (510.0817 without restraints) Performing minimization step: 1070. Total energy = 510.4576 kcal/mol (509.9690 without restraints) Performing minimization step: 1071. Total energy = 510.3451 kcal/mol (509.8569 without restraints) Performing minimization step: 1072. Total energy = 510.2327 kcal/mol (509.7447 without restraints) Performing minimization step: 1073. Total energy = 510.1206 kcal/mol (509.6329 without restraints) Performing minimization step: 1074. Total energy = 510.0088 kcal/mol (509.5215 without restraints) Performing minimization step: 1075. Total energy = 509.8972 kcal/mol (509.4102 without restraints) Performing minimization step: 1076. Total energy = 509.7857 kcal/mol (509.2990 without restraints) Performing minimization step: 1077. Total energy = 509.6747 kcal/mol (509.1883 without restraints) Performing minimization step: 1078. Total energy = 509.5638 kcal/mol (509.0777 without restraints) Performing minimization step: 1079. Total energy = 509.4534 kcal/mol (508.9676 without restraints) Performing minimization step: 1080. Total energy = 509.3430 kcal/mol (508.8575 without restraints) Performing minimization step: 1081. Total energy = 509.2329 kcal/mol (508.7477 without restraints) Performing minimization step: 1082. Total energy = 509.1230 kcal/mol (508.6380 without restraints) Performing minimization step: 1083. Total energy = 509.0133 kcal/mol (508.5287 without restraints) Performing minimization step: 1084. Total energy = 508.9039 kcal/mol (508.4195 without restraints) Performing minimization step: 1085. Total energy = 508.7947 kcal/mol (508.3106 without restraints) Performing minimization step: 1086. Total energy = 508.6857 kcal/mol (508.2020 without restraints) Performing minimization step: 1087. Total energy = 508.5769 kcal/mol (508.0934 without restraints) Performing minimization step: 1088. Total energy = 508.4681 kcal/mol (507.9850 without restraints) Performing minimization step: 1089. Total energy = 508.3598 kcal/mol (507.8770 without restraints) Performing minimization step: 1090. Total energy = 508.2517 kcal/mol (507.7692 without restraints) Performing minimization step: 1091. Total energy = 508.1435 kcal/mol (507.6612 without restraints) Performing minimization step: 1092. Total energy = 508.0359 kcal/mol (507.5539 without restraints) Performing minimization step: 1093. Total energy = 507.9285 kcal/mol (507.4468 without restraints) Performing minimization step: 1094. Total energy = 507.8212 kcal/mol (507.3398 without restraints) Performing minimization step: 1095. Total energy = 507.7144 kcal/mol (507.2334 without restraints) Performing minimization step: 1096. Total energy = 507.6077 kcal/mol (507.1269 without restraints) Performing minimization step: 1097. Total energy = 507.5012 kcal/mol (507.0207 without restraints) Performing minimization step: 1098. Total energy = 507.3947 kcal/mol (506.9145 without restraints) Performing minimization step: 1099. Total energy = 507.2886 kcal/mol (506.8087 without restraints) Performing minimization step: 1100. Total energy = 507.1827 kcal/mol (506.7031 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 507.0768 kcal/mol (506.5974 without restraints) Performing minimization step: 1102. Total energy = 506.9716 kcal/mol (506.4925 without restraints) Performing minimization step: 1103. Total energy = 506.8660 kcal/mol (506.3873 without restraints) Performing minimization step: 1104. Total energy = 506.7610 kcal/mol (506.2825 without restraints) Performing minimization step: 1105. Total energy = 506.6562 kcal/mol (506.1780 without restraints) Performing minimization step: 1106. Total energy = 506.5514 kcal/mol (506.0735 without restraints) Performing minimization step: 1107. Total energy = 506.4470 kcal/mol (505.9694 without restraints) Performing minimization step: 1108. Total energy = 506.3427 kcal/mol (505.8654 without restraints) Performing minimization step: 1109. Total energy = 506.2387 kcal/mol (505.7617 without restraints) Performing minimization step: 1110. Total energy = 506.1349 kcal/mol (505.6582 without restraints) Performing minimization step: 1111. Total energy = 506.0314 kcal/mol (505.5549 without restraints) Performing minimization step: 1112. Total energy = 505.9280 kcal/mol (505.4518 without restraints) Performing minimization step: 1113. Total energy = 505.8249 kcal/mol (505.3490 without restraints) Performing minimization step: 1114. Total energy = 505.7216 kcal/mol (505.2460 without restraints) Performing minimization step: 1115. Total energy = 505.6189 kcal/mol (505.1435 without restraints) Performing minimization step: 1116. Total energy = 505.5163 kcal/mol (505.0412 without restraints) Performing minimization step: 1117. Total energy = 505.4139 kcal/mol (504.9392 without restraints) Performing minimization step: 1118. Total energy = 505.3115 kcal/mol (504.8370 without restraints) Performing minimization step: 1119. Total energy = 505.2095 kcal/mol (504.7353 without restraints) Performing minimization step: 1120. Total energy = 505.1076 kcal/mol (504.6337 without restraints) Performing minimization step: 1121. Total energy = 505.0059 kcal/mol (504.5323 without restraints) Performing minimization step: 1122. Total energy = 504.9044 kcal/mol (504.4309 without restraints) Performing minimization step: 1123. Total energy = 504.8029 kcal/mol (504.3298 without restraints) Performing minimization step: 1124. Total energy = 504.7019 kcal/mol (504.2291 without restraints) Performing minimization step: 1125. Total energy = 504.6008 kcal/mol (504.1283 without restraints) Performing minimization step: 1126. Total energy = 504.5006 kcal/mol (504.0284 without restraints) Performing minimization step: 1127. Total energy = 504.4001 kcal/mol (503.9282 without restraints) Performing minimization step: 1128. Total energy = 504.2997 kcal/mol (503.8280 without restraints) Performing minimization step: 1129. Total energy = 504.1996 kcal/mol (503.7283 without restraints) Performing minimization step: 1130. Total energy = 504.0997 kcal/mol (503.6286 without restraints) Performing minimization step: 1131. Total energy = 504.0000 kcal/mol (503.5292 without restraints) Performing minimization step: 1132. Total energy = 503.9005 kcal/mol (503.4300 without restraints) Performing minimization step: 1133. Total energy = 503.8011 kcal/mol (503.3307 without restraints) Performing minimization step: 1134. Total energy = 503.7016 kcal/mol (503.2317 without restraints) Performing minimization step: 1135. Total energy = 503.6029 kcal/mol (503.1333 without restraints) Performing minimization step: 1136. Total energy = 503.5040 kcal/mol (503.0346 without restraints) Performing minimization step: 1137. Total energy = 503.4054 kcal/mol (502.9363 without restraints) Performing minimization step: 1138. Total energy = 503.3070 kcal/mol (502.8382 without restraints) Performing minimization step: 1139. Total energy = 503.2088 kcal/mol (502.7402 without restraints) Performing minimization step: 1140. Total energy = 503.1110 kcal/mol (502.6428 without restraints) Performing minimization step: 1141. Total energy = 503.0132 kcal/mol (502.5452 without restraints) Performing minimization step: 1142. Total energy = 502.9156 kcal/mol (502.4478 without restraints) Performing minimization step: 1143. Total energy = 502.8180 kcal/mol (502.3505 without restraints) Performing minimization step: 1144. Total energy = 502.7206 kcal/mol (502.2535 without restraints) Performing minimization step: 1145. Total energy = 502.6232 kcal/mol (502.1563 without restraints) Performing minimization step: 1146. Total energy = 502.5262 kcal/mol (502.0596 without restraints) Performing minimization step: 1147. Total energy = 502.4298 kcal/mol (501.9634 without restraints) Performing minimization step: 1148. Total energy = 502.3331 kcal/mol (501.8670 without restraints) Performing minimization step: 1149. Total energy = 502.2367 kcal/mol (501.7708 without restraints) Performing minimization step: 1150. Total energy = 502.1404 kcal/mol (501.6748 without restraints) Performing minimization step: 1151. Total energy = 502.0442 kcal/mol (501.5789 without restraints) Performing minimization step: 1152. Total energy = 501.9482 kcal/mol (501.4832 without restraints) Performing minimization step: 1153. Total energy = 501.8526 kcal/mol (501.3879 without restraints) Performing minimization step: 1154. Total energy = 501.7570 kcal/mol (501.2926 without restraints) Performing minimization step: 1155. Total energy = 501.6615 kcal/mol (501.1973 without restraints) Performing minimization step: 1156. Total energy = 501.5662 kcal/mol (501.1023 without restraints) Performing minimization step: 1157. Total energy = 501.4711 kcal/mol (501.0074 without restraints) Performing minimization step: 1158. Total energy = 501.3762 kcal/mol (500.9128 without restraints) Performing minimization step: 1159. Total energy = 501.2817 kcal/mol (500.8186 without restraints) Performing minimization step: 1160. Total energy = 501.1871 kcal/mol (500.7243 without restraints) Performing minimization step: 1161. Total energy = 501.0926 kcal/mol (500.6300 without restraints) Performing minimization step: 1162. Total energy = 500.9981 kcal/mol (500.5358 without restraints) Performing minimization step: 1163. Total energy = 500.9039 kcal/mol (500.4419 without restraints) Performing minimization step: 1164. Total energy = 500.8098 kcal/mol (500.3481 without restraints) Performing minimization step: 1165. Total energy = 500.7160 kcal/mol (500.2545 without restraints) Performing minimization step: 1166. Total energy = 500.6225 kcal/mol (500.1613 without restraints) Performing minimization step: 1167. Total energy = 500.5290 kcal/mol (500.0681 without restraints) Performing minimization step: 1168. Total energy = 500.4355 kcal/mol (499.9748 without restraints) Performing minimization step: 1169. Total energy = 500.3423 kcal/mol (499.8819 without restraints) Performing minimization step: 1170. Total energy = 500.2494 kcal/mol (499.7893 without restraints) Performing minimization step: 1171. Total energy = 500.1565 kcal/mol (499.6967 without restraints) Performing minimization step: 1172. Total energy = 500.0638 kcal/mol (499.6042 without restraints) Performing minimization step: 1173. Total energy = 499.9721 kcal/mol (499.5128 without restraints) Performing minimization step: 1174. Total energy = 499.8799 kcal/mol (499.4208 without restraints) Performing minimization step: 1175. Total energy = 499.7878 kcal/mol (499.3290 without restraints) Performing minimization step: 1176. Total energy = 499.6956 kcal/mol (499.2371 without restraints) Performing minimization step: 1177. Total energy = 499.6036 kcal/mol (499.1454 without restraints) Performing minimization step: 1178. Total energy = 499.5120 kcal/mol (499.0542 without restraints) Performing minimization step: 1179. Total energy = 499.4203 kcal/mol (498.9625 without restraints) Performing minimization step: 1180. Total energy = 499.3289 kcal/mol (498.8715 without restraints) Performing minimization step: 1181. Total energy = 499.2378 kcal/mol (498.7806 without restraints) Performing minimization step: 1182. Total energy = 499.1467 kcal/mol (498.6900 without restraints) Performing minimization step: 1183. Total energy = 499.0561 kcal/mol (498.5994 without restraints) Performing minimization step: 1184. Total energy = 498.9650 kcal/mol (498.5086 without restraints) Performing minimization step: 1185. Total energy = 498.8742 kcal/mol (498.4181 without restraints) Performing minimization step: 1186. Total energy = 498.7836 kcal/mol (498.3277 without restraints) Performing minimization step: 1187. Total energy = 498.6926 kcal/mol (498.2370 without restraints) Performing minimization step: 1188. Total energy = 498.6022 kcal/mol (498.1468 without restraints) Performing minimization step: 1189. Total energy = 498.5120 kcal/mol (498.0569 without restraints) Performing minimization step: 1190. Total energy = 498.4219 kcal/mol (497.9671 without restraints) Performing minimization step: 1191. Total energy = 498.3320 kcal/mol (497.8774 without restraints) Performing minimization step: 1192. Total energy = 498.2422 kcal/mol (497.7880 without restraints) Performing minimization step: 1193. Total energy = 498.1529 kcal/mol (497.6988 without restraints) Performing minimization step: 1194. Total energy = 498.0634 kcal/mol (497.6096 without restraints) Performing minimization step: 1195. Total energy = 497.9738 kcal/mol (497.5202 without restraints) Performing minimization step: 1196. Total energy = 497.8848 kcal/mol (497.4315 without restraints) Performing minimization step: 1197. Total energy = 497.7957 kcal/mol (497.3426 without restraints) Performing minimization step: 1198. Total energy = 497.7067 kcal/mol (497.2539 without restraints) Performing minimization step: 1199. Total energy = 497.6179 kcal/mol (497.1654 without restraints) Performing minimization step: 1200. Total energy = 497.5292 kcal/mol (497.0770 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 497.4404 kcal/mol (496.9884 without restraints) Performing minimization step: 1202. Total energy = 497.3518 kcal/mol (496.9000 without restraints) Performing minimization step: 1203. Total energy = 497.2637 kcal/mol (496.8122 without restraints) Performing minimization step: 1204. Total energy = 497.1758 kcal/mol (496.7245 without restraints) Performing minimization step: 1205. Total energy = 497.0877 kcal/mol (496.6368 without restraints) Performing minimization step: 1206. Total energy = 496.9998 kcal/mol (496.5491 without restraints) Performing minimization step: 1207. Total energy = 496.9121 kcal/mol (496.4616 without restraints) Performing minimization step: 1208. Total energy = 496.8246 kcal/mol (496.3745 without restraints) Performing minimization step: 1209. Total energy = 496.7372 kcal/mol (496.2872 without restraints) Performing minimization step: 1210. Total energy = 496.6498 kcal/mol (496.2001 without restraints) Performing minimization step: 1211. Total energy = 496.5625 kcal/mol (496.1131 without restraints) Performing minimization step: 1212. Total energy = 496.4754 kcal/mol (496.0263 without restraints) Performing minimization step: 1213. Total energy = 496.3885 kcal/mol (495.9397 without restraints) Performing minimization step: 1214. Total energy = 496.3018 kcal/mol (495.8532 without restraints) Performing minimization step: 1215. Total energy = 496.2150 kcal/mol (495.7665 without restraints) Performing minimization step: 1216. Total energy = 496.1289 kcal/mol (495.6807 without restraints) Performing minimization step: 1217. Total energy = 496.0422 kcal/mol (495.5943 without restraints) Performing minimization step: 1218. Total energy = 495.9560 kcal/mol (495.5084 without restraints) Performing minimization step: 1219. Total energy = 495.8698 kcal/mol (495.4225 without restraints) Performing minimization step: 1220. Total energy = 495.7838 kcal/mol (495.3367 without restraints) Performing minimization step: 1221. Total energy = 495.6982 kcal/mol (495.2513 without restraints) Performing minimization step: 1222. Total energy = 495.6123 kcal/mol (495.1657 without restraints) Performing minimization step: 1223. Total energy = 495.5265 kcal/mol (495.0802 without restraints) Performing minimization step: 1224. Total energy = 495.4411 kcal/mol (494.9950 without restraints) Performing minimization step: 1225. Total energy = 495.3556 kcal/mol (494.9097 without restraints) Performing minimization step: 1226. Total energy = 495.2702 kcal/mol (494.8246 without restraints) Performing minimization step: 1227. Total energy = 495.1850 kcal/mol (494.7397 without restraints) Performing minimization step: 1228. Total energy = 495.0999 kcal/mol (494.6548 without restraints) Performing minimization step: 1229. Total energy = 495.0149 kcal/mol (494.5701 without restraints) Performing minimization step: 1230. Total energy = 494.9297 kcal/mol (494.4851 without restraints) Performing minimization step: 1231. Total energy = 494.8449 kcal/mol (494.4006 without restraints) Performing minimization step: 1232. Total energy = 494.7605 kcal/mol (494.3164 without restraints) Performing minimization step: 1233. Total energy = 494.6760 kcal/mol (494.2321 without restraints) Performing minimization step: 1234. Total energy = 494.5917 kcal/mol (494.1481 without restraints) Performing minimization step: 1235. Total energy = 494.5075 kcal/mol (494.0641 without restraints) Performing minimization step: 1236. Total energy = 494.4233 kcal/mol (493.9802 without restraints) Performing minimization step: 1237. Total energy = 494.3392 kcal/mol (493.8964 without restraints) Performing minimization step: 1238. Total energy = 494.2553 kcal/mol (493.8127 without restraints) Performing minimization step: 1239. Total energy = 494.1715 kcal/mol (493.7291 without restraints) Performing minimization step: 1240. Total energy = 494.0877 kcal/mol (493.6456 without restraints) Performing minimization step: 1241. Total energy = 494.0043 kcal/mol (493.5624 without restraints) Performing minimization step: 1242. Total energy = 493.9208 kcal/mol (493.4792 without restraints) Performing minimization step: 1243. Total energy = 493.8376 kcal/mol (493.3963 without restraints) Performing minimization step: 1244. Total energy = 493.7545 kcal/mol (493.3133 without restraints) Performing minimization step: 1245. Total energy = 493.6713 kcal/mol (493.2304 without restraints) Performing minimization step: 1246. Total energy = 493.5883 kcal/mol (493.1476 without restraints) Performing minimization step: 1247. Total energy = 493.5053 kcal/mol (493.0649 without restraints) Performing minimization step: 1248. Total energy = 493.4224 kcal/mol (492.9823 without restraints) Performing minimization step: 1249. Total energy = 493.3397 kcal/mol (492.8998 without restraints) Performing minimization step: 1250. Total energy = 493.2569 kcal/mol (492.8172 without restraints) Performing minimization step: 1251. Total energy = 493.1741 kcal/mol (492.7345 without restraints) Performing minimization step: 1252. Total energy = 493.0916 kcal/mol (492.6524 without restraints) Performing minimization step: 1253. Total energy = 493.0093 kcal/mol (492.5703 without restraints) Performing minimization step: 1254. Total energy = 492.9271 kcal/mol (492.4884 without restraints) Performing minimization step: 1255. Total energy = 492.8450 kcal/mol (492.4066 without restraints) Performing minimization step: 1256. Total energy = 492.7631 kcal/mol (492.3249 without restraints) Performing minimization step: 1257. Total energy = 492.6815 kcal/mol (492.2435 without restraints) Performing minimization step: 1258. Total energy = 492.5998 kcal/mol (492.1620 without restraints) Performing minimization step: 1259. Total energy = 492.5182 kcal/mol (492.0809 without restraints) Performing minimization step: 1260. Total energy = 492.4368 kcal/mol (491.9996 without restraints) Performing minimization step: 1261. Total energy = 492.3556 kcal/mol (491.9186 without restraints) Performing minimization step: 1262. Total energy = 492.2741 kcal/mol (491.8373 without restraints) Performing minimization step: 1263. Total energy = 492.1929 kcal/mol (491.7564 without restraints) Performing minimization step: 1264. Total energy = 492.1118 kcal/mol (491.6755 without restraints) Performing minimization step: 1265. Total energy = 492.0310 kcal/mol (491.5949 without restraints) Performing minimization step: 1266. Total energy = 491.9501 kcal/mol (491.5143 without restraints) Performing minimization step: 1267. Total energy = 491.8693 kcal/mol (491.4337 without restraints) Performing minimization step: 1268. Total energy = 491.7885 kcal/mol (491.3530 without restraints) Performing minimization step: 1269. Total energy = 491.7077 kcal/mol (491.2725 without restraints) Performing minimization step: 1270. Total energy = 491.6271 kcal/mol (491.1922 without restraints) Performing minimization step: 1271. Total energy = 491.5467 kcal/mol (491.1121 without restraints) Performing minimization step: 1272. Total energy = 491.4662 kcal/mol (491.0318 without restraints) Performing minimization step: 1273. Total energy = 491.3860 kcal/mol (490.9519 without restraints) Performing minimization step: 1274. Total energy = 491.3059 kcal/mol (490.8720 without restraints) Performing minimization step: 1275. Total energy = 491.2259 kcal/mol (490.7923 without restraints) Performing minimization step: 1276. Total energy = 491.1461 kcal/mol (490.7127 without restraints) Performing minimization step: 1277. Total energy = 491.0665 kcal/mol (490.6333 without restraints) Performing minimization step: 1278. Total energy = 490.9868 kcal/mol (490.5539 without restraints) Performing minimization step: 1279. Total energy = 490.9072 kcal/mol (490.4745 without restraints) Performing minimization step: 1280. Total energy = 490.8277 kcal/mol (490.3952 without restraints) Performing minimization step: 1281. Total energy = 490.7482 kcal/mol (490.3160 without restraints) Performing minimization step: 1282. Total energy = 490.6689 kcal/mol (490.2369 without restraints) Performing minimization step: 1283. Total energy = 490.5897 kcal/mol (490.1580 without restraints) Performing minimization step: 1284. Total energy = 490.5104 kcal/mol (490.0789 without restraints) Performing minimization step: 1285. Total energy = 490.4313 kcal/mol (490.0000 without restraints) Performing minimization step: 1286. Total energy = 490.3523 kcal/mol (489.9213 without restraints) Performing minimization step: 1287. Total energy = 490.2735 kcal/mol (489.8427 without restraints) Performing minimization step: 1288. Total energy = 490.1948 kcal/mol (489.7642 without restraints) Performing minimization step: 1289. Total energy = 490.1161 kcal/mol (489.6858 without restraints) Performing minimization step: 1290. Total energy = 490.0378 kcal/mol (489.6077 without restraints) Performing minimization step: 1291. Total energy = 489.9593 kcal/mol (489.5295 without restraints) Performing minimization step: 1292. Total energy = 489.8812 kcal/mol (489.4515 without restraints) Performing minimization step: 1293. Total energy = 489.8029 kcal/mol (489.3735 without restraints) Performing minimization step: 1294. Total energy = 489.7247 kcal/mol (489.2955 without restraints) Performing minimization step: 1295. Total energy = 489.6470 kcal/mol (489.2181 without restraints) Performing minimization step: 1296. Total energy = 489.5690 kcal/mol (489.1403 without restraints) Performing minimization step: 1297. Total energy = 489.4911 kcal/mol (489.0627 without restraints) Performing minimization step: 1298. Total energy = 489.4133 kcal/mol (488.9851 without restraints) Performing minimization step: 1299. Total energy = 489.3355 kcal/mol (488.9075 without restraints) Performing minimization step: 1300. Total energy = 489.2579 kcal/mol (488.8301 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 489.1803 kcal/mol (488.7528 without restraints) Performing minimization step: 1302. Total energy = 489.1029 kcal/mol (488.6756 without restraints) Performing minimization step: 1303. Total energy = 489.0254 kcal/mol (488.5983 without restraints) Performing minimization step: 1304. Total energy = 488.9479 kcal/mol (488.5210 without restraints) Performing minimization step: 1305. Total energy = 488.8707 kcal/mol (488.4441 without restraints) Performing minimization step: 1306. Total energy = 488.7934 kcal/mol (488.3671 without restraints) Performing minimization step: 1307. Total energy = 488.7160 kcal/mol (488.2898 without restraints) Performing minimization step: 1308. Total energy = 488.6390 kcal/mol (488.2131 without restraints) Performing minimization step: 1309. Total energy = 488.5621 kcal/mol (488.1365 without restraints) Performing minimization step: 1310. Total energy = 488.4854 kcal/mol (488.0600 without restraints) Performing minimization step: 1311. Total energy = 488.4088 kcal/mol (487.9836 without restraints) Performing minimization step: 1312. Total energy = 488.3322 kcal/mol (487.9072 without restraints) Performing minimization step: 1313. Total energy = 488.2557 kcal/mol (487.8310 without restraints) Performing minimization step: 1314. Total energy = 488.1794 kcal/mol (487.7549 without restraints) Performing minimization step: 1315. Total energy = 488.1031 kcal/mol (487.6788 without restraints) Performing minimization step: 1316. Total energy = 488.0269 kcal/mol (487.6028 without restraints) Performing minimization step: 1317. Total energy = 487.9507 kcal/mol (487.5269 without restraints) Performing minimization step: 1318. Total energy = 487.8744 kcal/mol (487.4508 without restraints) Performing minimization step: 1319. Total energy = 487.7985 kcal/mol (487.3751 without restraints) Performing minimization step: 1320. Total energy = 487.7226 kcal/mol (487.2994 without restraints) Performing minimization step: 1321. Total energy = 487.6470 kcal/mol (487.2240 without restraints) Performing minimization step: 1322. Total energy = 487.5712 kcal/mol (487.1485 without restraints) Performing minimization step: 1323. Total energy = 487.4956 kcal/mol (487.0731 without restraints) Performing minimization step: 1324. Total energy = 487.4200 kcal/mol (486.9978 without restraints) Performing minimization step: 1325. Total energy = 487.3447 kcal/mol (486.9227 without restraints) Performing minimization step: 1326. Total energy = 487.2695 kcal/mol (486.8477 without restraints) Performing minimization step: 1327. Total energy = 487.1943 kcal/mol (486.7728 without restraints) Performing minimization step: 1328. Total energy = 487.1191 kcal/mol (486.6978 without restraints) Performing minimization step: 1329. Total energy = 487.0440 kcal/mol (486.6229 without restraints) Performing minimization step: 1330. Total energy = 486.9689 kcal/mol (486.5480 without restraints) Performing minimization step: 1331. Total energy = 486.8939 kcal/mol (486.4733 without restraints) Performing minimization step: 1332. Total energy = 486.8189 kcal/mol (486.3984 without restraints) Performing minimization step: 1333. Total energy = 486.7445 kcal/mol (486.3243 without restraints) Performing minimization step: 1334. Total energy = 486.6700 kcal/mol (486.2500 without restraints) Performing minimization step: 1335. Total energy = 486.5954 kcal/mol (486.1756 without restraints) Performing minimization step: 1336. Total energy = 486.5208 kcal/mol (486.1012 without restraints) Performing minimization step: 1337. Total energy = 486.4462 kcal/mol (486.0269 without restraints) Performing minimization step: 1338. Total energy = 486.3718 kcal/mol (485.9527 without restraints) Performing minimization step: 1339. Total energy = 486.2974 kcal/mol (485.8786 without restraints) Performing minimization step: 1340. Total energy = 486.2232 kcal/mol (485.8045 without restraints) Performing minimization step: 1341. Total energy = 486.1488 kcal/mol (485.7303 without restraints) Performing minimization step: 1342. Total energy = 486.0748 kcal/mol (485.6566 without restraints) Performing minimization step: 1343. Total energy = 486.0008 kcal/mol (485.5828 without restraints) Performing minimization step: 1344. Total energy = 485.9268 kcal/mol (485.5091 without restraints) Performing minimization step: 1345. Total energy = 485.8528 kcal/mol (485.4352 without restraints) Performing minimization step: 1346. Total energy = 485.7791 kcal/mol (485.3620 without restraints) Performing minimization step: 1347. Total energy = 485.7056 kcal/mol (485.2885 without restraints) Performing minimization step: 1348. Total energy = 485.6319 kcal/mol (485.2151 without restraints) Performing minimization step: 1349. Total energy = 485.5586 kcal/mol (485.1419 without restraints) Performing minimization step: 1350. Total energy = 485.4851 kcal/mol (485.0686 without restraints) Performing minimization step: 1351. Total energy = 485.4116 kcal/mol (484.9954 without restraints) Performing minimization step: 1352. Total energy = 485.3383 kcal/mol (484.9223 without restraints) Performing minimization step: 1353. Total energy = 485.2651 kcal/mol (484.8493 without restraints) Performing minimization step: 1354. Total energy = 485.1919 kcal/mol (484.7763 without restraints) Performing minimization step: 1355. Total energy = 485.1185 kcal/mol (484.7032 without restraints) Performing minimization step: 1356. Total energy = 485.0455 kcal/mol (484.6304 without restraints) Performing minimization step: 1357. Total energy = 484.9726 kcal/mol (484.5577 without restraints) Performing minimization step: 1358. Total energy = 484.8996 kcal/mol (484.4850 without restraints) Performing minimization step: 1359. Total energy = 484.8268 kcal/mol (484.4124 without restraints) Performing minimization step: 1360. Total energy = 484.7539 kcal/mol (484.3396 without restraints) Performing minimization step: 1361. Total energy = 484.6811 kcal/mol (484.2671 without restraints) Performing minimization step: 1362. Total energy = 484.6086 kcal/mol (484.1948 without restraints) Performing minimization step: 1363. Total energy = 484.5360 kcal/mol (484.1224 without restraints) Performing minimization step: 1364. Total energy = 484.4635 kcal/mol (484.0502 without restraints) Performing minimization step: 1365. Total energy = 484.3914 kcal/mol (483.9782 without restraints) Performing minimization step: 1366. Total energy = 484.3193 kcal/mol (483.9064 without restraints) Performing minimization step: 1367. Total energy = 484.2470 kcal/mol (483.8343 without restraints) Performing minimization step: 1368. Total energy = 484.1747 kcal/mol (483.7622 without restraints) Performing minimization step: 1369. Total energy = 484.1026 kcal/mol (483.6903 without restraints) Performing minimization step: 1370. Total energy = 484.0305 kcal/mol (483.6185 without restraints) Performing minimization step: 1371. Total energy = 483.9586 kcal/mol (483.5468 without restraints) Performing minimization step: 1372. Total energy = 483.8867 kcal/mol (483.4751 without restraints) Performing minimization step: 1373. Total energy = 483.8148 kcal/mol (483.4033 without restraints) Performing minimization step: 1374. Total energy = 483.7429 kcal/mol (483.3317 without restraints) Performing minimization step: 1375. Total energy = 483.6712 kcal/mol (483.2603 without restraints) Performing minimization step: 1376. Total energy = 483.5996 kcal/mol (483.1889 without restraints) Performing minimization step: 1377. Total energy = 483.5281 kcal/mol (483.1176 without restraints) Performing minimization step: 1378. Total energy = 483.4566 kcal/mol (483.0464 without restraints) Performing minimization step: 1379. Total energy = 483.3853 kcal/mol (482.9752 without restraints) Performing minimization step: 1380. Total energy = 483.3139 kcal/mol (482.9041 without restraints) Performing minimization step: 1381. Total energy = 483.2429 kcal/mol (482.8332 without restraints) Performing minimization step: 1382. Total energy = 483.1717 kcal/mol (482.7622 without restraints) Performing minimization step: 1383. Total energy = 483.1005 kcal/mol (482.6913 without restraints) Performing minimization step: 1384. Total energy = 483.0295 kcal/mol (482.6205 without restraints) Performing minimization step: 1385. Total energy = 482.9585 kcal/mol (482.5497 without restraints) Performing minimization step: 1386. Total energy = 482.8874 kcal/mol (482.4788 without restraints) Performing minimization step: 1387. Total energy = 482.8165 kcal/mol (482.4082 without restraints) Performing minimization step: 1388. Total energy = 482.7458 kcal/mol (482.3376 without restraints) Performing minimization step: 1389. Total energy = 482.6751 kcal/mol (482.2671 without restraints) Performing minimization step: 1390. Total energy = 482.6044 kcal/mol (482.1967 without restraints) Performing minimization step: 1391. Total energy = 482.5339 kcal/mol (482.1264 without restraints) Performing minimization step: 1392. Total energy = 482.4637 kcal/mol (482.0564 without restraints) Performing minimization step: 1393. Total energy = 482.3933 kcal/mol (481.9862 without restraints) Performing minimization step: 1394. Total energy = 482.3229 kcal/mol (481.9160 without restraints) Performing minimization step: 1395. Total energy = 482.2527 kcal/mol (481.8460 without restraints) Performing minimization step: 1396. Total energy = 482.1824 kcal/mol (481.7760 without restraints) Performing minimization step: 1397. Total energy = 482.1123 kcal/mol (481.7061 without restraints) Performing minimization step: 1398. Total energy = 482.0422 kcal/mol (481.6362 without restraints) Performing minimization step: 1399. Total energy = 481.9722 kcal/mol (481.5664 without restraints) Performing minimization step: 1400. Total energy = 481.9025 kcal/mol (481.4970 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 481.8326 kcal/mol (481.4272 without restraints) Performing minimization step: 1402. Total energy = 481.7628 kcal/mol (481.3575 without restraints) Performing minimization step: 1403. Total energy = 481.6933 kcal/mol (481.2883 without restraints) Performing minimization step: 1404. Total energy = 481.6235 kcal/mol (481.2188 without restraints) Performing minimization step: 1405. Total energy = 481.5543 kcal/mol (481.1498 without restraints) Performing minimization step: 1406. Total energy = 481.4847 kcal/mol (481.0804 without restraints) Performing minimization step: 1407. Total energy = 481.4152 kcal/mol (481.0111 without restraints) Performing minimization step: 1408. Total energy = 481.3457 kcal/mol (480.9418 without restraints) Performing minimization step: 1409. Total energy = 481.2763 kcal/mol (480.8726 without restraints) Performing minimization step: 1410. Total energy = 481.2070 kcal/mol (480.8035 without restraints) Performing minimization step: 1411. Total energy = 481.1377 kcal/mol (480.7344 without restraints) Performing minimization step: 1412. Total energy = 481.0683 kcal/mol (480.6652 without restraints) Performing minimization step: 1413. Total energy = 480.9992 kcal/mol (480.5963 without restraints) Performing minimization step: 1414. Total energy = 480.9301 kcal/mol (480.5274 without restraints) Performing minimization step: 1415. Total energy = 480.8611 kcal/mol (480.4586 without restraints) Performing minimization step: 1416. Total energy = 480.7919 kcal/mol (480.3897 without restraints) Performing minimization step: 1417. Total energy = 480.7231 kcal/mol (480.3210 without restraints) Performing minimization step: 1418. Total energy = 480.6544 kcal/mol (480.2526 without restraints) Performing minimization step: 1419. Total energy = 480.5870 kcal/mol (480.1853 without restraints) Performing minimization step: 1420. Total energy = 480.5182 kcal/mol (480.1168 without restraints) Performing minimization step: 1421. Total energy = 480.4497 kcal/mol (480.0486 without restraints) Performing minimization step: 1422. Total energy = 480.3812 kcal/mol (479.9802 without restraints) Performing minimization step: 1423. Total energy = 480.3123 kcal/mol (479.9114 without restraints) Performing minimization step: 1424. Total energy = 480.2437 kcal/mol (479.8431 without restraints) Performing minimization step: 1425. Total energy = 480.1753 kcal/mol (479.7749 without restraints) Performing minimization step: 1426. Total energy = 480.1070 kcal/mol (479.7069 without restraints) Performing minimization step: 1427. Total energy = 480.0387 kcal/mol (479.6388 without restraints) Performing minimization step: 1428. Total energy = 479.9705 kcal/mol (479.5708 without restraints) Performing minimization step: 1429. Total energy = 479.9026 kcal/mol (479.5030 without restraints) Performing minimization step: 1430. Total energy = 479.8345 kcal/mol (479.4352 without restraints) Performing minimization step: 1431. Total energy = 479.7664 kcal/mol (479.3673 without restraints) Performing minimization step: 1432. Total energy = 479.6986 kcal/mol (479.2997 without restraints) Performing minimization step: 1433. Total energy = 479.6307 kcal/mol (479.2320 without restraints) Performing minimization step: 1434. Total energy = 479.5630 kcal/mol (479.1645 without restraints) Performing minimization step: 1435. Total energy = 479.4951 kcal/mol (479.0968 without restraints) Performing minimization step: 1436. Total energy = 479.4274 kcal/mol (479.0292 without restraints) Performing minimization step: 1437. Total energy = 479.3597 kcal/mol (478.9618 without restraints) Performing minimization step: 1438. Total energy = 479.2919 kcal/mol (478.8942 without restraints) Performing minimization step: 1439. Total energy = 479.2245 kcal/mol (478.8271 without restraints) Performing minimization step: 1440. Total energy = 479.1570 kcal/mol (478.7598 without restraints) Performing minimization step: 1441. Total energy = 479.0894 kcal/mol (478.6923 without restraints) Performing minimization step: 1442. Total energy = 479.0220 kcal/mol (478.6251 without restraints) Performing minimization step: 1443. Total energy = 478.9546 kcal/mol (478.5580 without restraints) Performing minimization step: 1444. Total energy = 478.8874 kcal/mol (478.4909 without restraints) Performing minimization step: 1445. Total energy = 478.8201 kcal/mol (478.4239 without restraints) Performing minimization step: 1446. Total energy = 478.7530 kcal/mol (478.3569 without restraints) Performing minimization step: 1447. Total energy = 478.6859 kcal/mol (478.2900 without restraints) Performing minimization step: 1448. Total energy = 478.6189 kcal/mol (478.2232 without restraints) Performing minimization step: 1449. Total energy = 478.5519 kcal/mol (478.1564 without restraints) Performing minimization step: 1450. Total energy = 478.4849 kcal/mol (478.0897 without restraints) Performing minimization step: 1451. Total energy = 478.4181 kcal/mol (478.0230 without restraints) Performing minimization step: 1452. Total energy = 478.3512 kcal/mol (477.9564 without restraints) Performing minimization step: 1453. Total energy = 478.2844 kcal/mol (477.8898 without restraints) Performing minimization step: 1454. Total energy = 478.2174 kcal/mol (477.8230 without restraints) Performing minimization step: 1455. Total energy = 478.1508 kcal/mol (477.7566 without restraints) Performing minimization step: 1456. Total energy = 478.0842 kcal/mol (477.6902 without restraints) Performing minimization step: 1457. Total energy = 478.0181 kcal/mol (477.6242 without restraints) Performing minimization step: 1458. Total energy = 477.9516 kcal/mol (477.5579 without restraints) Performing minimization step: 1459. Total energy = 477.8852 kcal/mol (477.4917 without restraints) Performing minimization step: 1460. Total energy = 477.8187 kcal/mol (477.4254 without restraints) Performing minimization step: 1461. Total energy = 477.7523 kcal/mol (477.3593 without restraints) Performing minimization step: 1462. Total energy = 477.6861 kcal/mol (477.2933 without restraints) Performing minimization step: 1463. Total energy = 477.6197 kcal/mol (477.2271 without restraints) Performing minimization step: 1464. Total energy = 477.5536 kcal/mol (477.1611 without restraints) Performing minimization step: 1465. Total energy = 477.4874 kcal/mol (477.0952 without restraints) Performing minimization step: 1466. Total energy = 477.4216 kcal/mol (477.0296 without restraints) Performing minimization step: 1467. Total energy = 477.3557 kcal/mol (476.9638 without restraints) Performing minimization step: 1468. Total energy = 477.2899 kcal/mol (476.8983 without restraints) Performing minimization step: 1469. Total energy = 477.2242 kcal/mol (476.8328 without restraints) Performing minimization step: 1470. Total energy = 477.1584 kcal/mol (476.7672 without restraints) Performing minimization step: 1471. Total energy = 477.0927 kcal/mol (476.7016 without restraints) Performing minimization step: 1472. Total energy = 477.0270 kcal/mol (476.6361 without restraints) Performing minimization step: 1473. Total energy = 476.9615 kcal/mol (476.5711 without restraints) Performing minimization step: 1474. Total energy = 476.8961 kcal/mol (476.5057 without restraints) Performing minimization step: 1475. Total energy = 476.8307 kcal/mol (476.4405 without restraints) Performing minimization step: 1476. Total energy = 476.7653 kcal/mol (476.3753 without restraints) Performing minimization step: 1477. Total energy = 476.6998 kcal/mol (476.3100 without restraints) Performing minimization step: 1478. Total energy = 476.6344 kcal/mol (476.2448 without restraints) Performing minimization step: 1479. Total energy = 476.5691 kcal/mol (476.1796 without restraints) Performing minimization step: 1480. Total energy = 476.5036 kcal/mol (476.1143 without restraints) Performing minimization step: 1481. Total energy = 476.4383 kcal/mol (476.0493 without restraints) Performing minimization step: 1482. Total energy = 476.3732 kcal/mol (475.9843 without restraints) Performing minimization step: 1483. Total energy = 476.3082 kcal/mol (475.9196 without restraints) Performing minimization step: 1484. Total energy = 476.2429 kcal/mol (475.8545 without restraints) Performing minimization step: 1485. Total energy = 476.1779 kcal/mol (475.7897 without restraints) Performing minimization step: 1486. Total energy = 476.1130 kcal/mol (475.7249 without restraints) Performing minimization step: 1487. Total energy = 476.0481 kcal/mol (475.6602 without restraints) Performing minimization step: 1488. Total energy = 475.9832 kcal/mol (475.5955 without restraints) Performing minimization step: 1489. Total energy = 475.9184 kcal/mol (475.5309 without restraints) Performing minimization step: 1490. Total energy = 475.8539 kcal/mol (475.4666 without restraints) Performing minimization step: 1491. Total energy = 475.7893 kcal/mol (475.4023 without restraints) Performing minimization step: 1492. Total energy = 475.7249 kcal/mol (475.3380 without restraints) Performing minimization step: 1493. Total energy = 475.6605 kcal/mol (475.2738 without restraints) Performing minimization step: 1494. Total energy = 475.5961 kcal/mol (475.2096 without restraints) Performing minimization step: 1495. Total energy = 475.5316 kcal/mol (475.1453 without restraints) Performing minimization step: 1496. Total energy = 475.4672 kcal/mol (475.0811 without restraints) Performing minimization step: 1497. Total energy = 475.4028 kcal/mol (475.0169 without restraints) Performing minimization step: 1498. Total energy = 475.3387 kcal/mol (474.9530 without restraints) Performing minimization step: 1499. Total energy = 475.2744 kcal/mol (474.8889 without restraints) Performing minimization step: 1500. Total energy = 475.2102 kcal/mol (474.8248 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 475.1459 kcal/mol (474.7606 without restraints) Performing minimization step: 1502. Total energy = 475.0818 kcal/mol (474.6968 without restraints) Performing minimization step: 1503. Total energy = 475.0182 kcal/mol (474.6334 without restraints) Performing minimization step: 1504. Total energy = 474.9541 kcal/mol (474.5695 without restraints) Performing minimization step: 1505. Total energy = 474.8900 kcal/mol (474.5056 without restraints) Performing minimization step: 1506. Total energy = 474.8260 kcal/mol (474.4418 without restraints) Performing minimization step: 1507. Total energy = 474.7622 kcal/mol (474.3782 without restraints) Performing minimization step: 1508. Total energy = 474.6983 kcal/mol (474.3145 without restraints) Performing minimization step: 1509. Total energy = 474.6345 kcal/mol (474.2509 without restraints) Performing minimization step: 1510. Total energy = 474.5708 kcal/mol (474.1874 without restraints) Performing minimization step: 1511. Total energy = 474.5071 kcal/mol (474.1239 without restraints) Performing minimization step: 1512. Total energy = 474.4435 kcal/mol (474.0605 without restraints) Performing minimization step: 1513. Total energy = 474.3799 kcal/mol (473.9971 without restraints) Performing minimization step: 1514. Total energy = 474.3164 kcal/mol (473.9337 without restraints) Performing minimization step: 1515. Total energy = 474.2525 kcal/mol (473.8700 without restraints) Performing minimization step: 1516. Total energy = 474.1895 kcal/mol (473.8073 without restraints) Performing minimization step: 1517. Total energy = 474.1263 kcal/mol (473.7443 without restraints) Performing minimization step: 1518. Total energy = 474.0632 kcal/mol (473.6813 without restraints) Performing minimization step: 1519. Total energy = 474.0000 kcal/mol (473.6182 without restraints) Performing minimization step: 1520. Total energy = 473.9367 kcal/mol (473.5552 without restraints) Performing minimization step: 1521. Total energy = 473.8730 kcal/mol (473.4917 without restraints) Performing minimization step: 1522. Total energy = 473.8099 kcal/mol (473.4287 without restraints) Performing minimization step: 1523. Total energy = 473.7467 kcal/mol (473.3656 without restraints) Performing minimization step: 1524. Total energy = 473.6838 kcal/mol (473.3030 without restraints) Performing minimization step: 1525. Total energy = 473.6207 kcal/mol (473.2400 without restraints) Performing minimization step: 1526. Total energy = 473.5576 kcal/mol (473.1772 without restraints) Performing minimization step: 1527. Total energy = 473.4945 kcal/mol (473.1143 without restraints) Performing minimization step: 1528. Total energy = 473.4316 kcal/mol (473.0516 without restraints) Performing minimization step: 1529. Total energy = 473.3688 kcal/mol (472.9890 without restraints) Performing minimization step: 1530. Total energy = 473.3060 kcal/mol (472.9264 without restraints) Performing minimization step: 1531. Total energy = 473.2435 kcal/mol (472.8641 without restraints) Performing minimization step: 1532. Total energy = 473.1807 kcal/mol (472.8014 without restraints) Performing minimization step: 1533. Total energy = 473.1180 kcal/mol (472.7390 without restraints) Performing minimization step: 1534. Total energy = 473.0555 kcal/mol (472.6766 without restraints) Performing minimization step: 1535. Total energy = 472.9929 kcal/mol (472.6142 without restraints) Performing minimization step: 1536. Total energy = 472.9306 kcal/mol (472.5522 without restraints) Performing minimization step: 1537. Total energy = 472.8683 kcal/mol (472.4900 without restraints) Performing minimization step: 1538. Total energy = 472.8057 kcal/mol (472.4276 without restraints) Performing minimization step: 1539. Total energy = 472.7433 kcal/mol (472.3654 without restraints) Performing minimization step: 1540. Total energy = 472.6810 kcal/mol (472.3033 without restraints) Performing minimization step: 1541. Total energy = 472.6189 kcal/mol (472.2414 without restraints) Performing minimization step: 1542. Total energy = 472.5568 kcal/mol (472.1794 without restraints) Performing minimization step: 1543. Total energy = 472.4946 kcal/mol (472.1174 without restraints) Performing minimization step: 1544. Total energy = 472.4327 kcal/mol (472.0557 without restraints) Performing minimization step: 1545. Total energy = 472.3706 kcal/mol (471.9938 without restraints) Performing minimization step: 1546. Total energy = 472.3086 kcal/mol (471.9319 without restraints) Performing minimization step: 1547. Total energy = 472.2466 kcal/mol (471.8701 without restraints) Performing minimization step: 1548. Total energy = 472.1844 kcal/mol (471.8082 without restraints) Performing minimization step: 1549. Total energy = 472.1225 kcal/mol (471.7465 without restraints) Performing minimization step: 1550. Total energy = 472.0607 kcal/mol (471.6848 without restraints) Performing minimization step: 1551. Total energy = 471.9989 kcal/mol (471.6232 without restraints) Performing minimization step: 1552. Total energy = 471.9369 kcal/mol (471.5614 without restraints) Performing minimization step: 1553. Total energy = 471.8752 kcal/mol (471.4999 without restraints) Performing minimization step: 1554. Total energy = 471.8136 kcal/mol (471.4384 without restraints) Performing minimization step: 1555. Total energy = 471.7515 kcal/mol (471.3765 without restraints) Performing minimization step: 1556. Total energy = 471.6899 kcal/mol (471.3151 without restraints) Performing minimization step: 1557. Total energy = 471.6286 kcal/mol (471.2540 without restraints) Performing minimization step: 1558. Total energy = 471.5672 kcal/mol (471.1929 without restraints) Performing minimization step: 1559. Total energy = 471.5059 kcal/mol (471.1317 without restraints) Performing minimization step: 1560. Total energy = 471.4446 kcal/mol (471.0705 without restraints) Performing minimization step: 1561. Total energy = 471.3832 kcal/mol (471.0093 without restraints) Performing minimization step: 1562. Total energy = 471.3219 kcal/mol (470.9482 without restraints) Performing minimization step: 1563. Total energy = 471.2606 kcal/mol (470.8871 without restraints) Performing minimization step: 1564. Total energy = 471.1994 kcal/mol (470.8261 without restraints) Performing minimization step: 1565. Total energy = 471.1384 kcal/mol (470.7653 without restraints) Performing minimization step: 1566. Total energy = 471.0773 kcal/mol (470.7044 without restraints) Performing minimization step: 1567. Total energy = 471.0162 kcal/mol (470.6435 without restraints) Performing minimization step: 1568. Total energy = 470.9552 kcal/mol (470.5826 without restraints) Performing minimization step: 1569. Total energy = 470.8940 kcal/mol (470.5216 without restraints) Performing minimization step: 1570. Total energy = 470.8330 kcal/mol (470.4608 without restraints) Performing minimization step: 1571. Total energy = 470.7719 kcal/mol (470.3997 without restraints) Performing minimization step: 1572. Total energy = 470.7109 kcal/mol (470.3390 without restraints) Performing minimization step: 1573. Total energy = 470.6500 kcal/mol (470.2783 without restraints) Performing minimization step: 1574. Total energy = 470.5894 kcal/mol (470.2180 without restraints) Performing minimization step: 1575. Total energy = 470.5288 kcal/mol (470.1574 without restraints) Performing minimization step: 1576. Total energy = 470.4684 kcal/mol (470.0973 without restraints) Performing minimization step: 1577. Total energy = 470.4077 kcal/mol (470.0367 without restraints) Performing minimization step: 1578. Total energy = 470.3471 kcal/mol (469.9763 without restraints) Performing minimization step: 1579. Total energy = 470.2865 kcal/mol (469.9159 without restraints) Performing minimization step: 1580. Total energy = 470.2260 kcal/mol (469.8556 without restraints) Performing minimization step: 1581. Total energy = 470.1656 kcal/mol (469.7953 without restraints) Performing minimization step: 1582. Total energy = 470.1049 kcal/mol (469.7348 without restraints) Performing minimization step: 1583. Total energy = 470.0445 kcal/mol (469.6746 without restraints) Performing minimization step: 1584. Total energy = 469.9839 kcal/mol (469.6142 without restraints) Performing minimization step: 1585. Total energy = 469.9234 kcal/mol (469.5539 without restraints) Performing minimization step: 1586. Total energy = 469.8632 kcal/mol (469.4938 without restraints) Performing minimization step: 1587. Total energy = 469.8029 kcal/mol (469.4338 without restraints) Performing minimization step: 1588. Total energy = 469.7429 kcal/mol (469.3739 without restraints) Performing minimization step: 1589. Total energy = 469.6828 kcal/mol (469.3140 without restraints) Performing minimization step: 1590. Total energy = 469.6227 kcal/mol (469.2541 without restraints) Performing minimization step: 1591. Total energy = 469.5628 kcal/mol (469.1943 without restraints) Performing minimization step: 1592. Total energy = 469.5029 kcal/mol (469.1347 without restraints) Performing minimization step: 1593. Total energy = 469.4427 kcal/mol (469.0746 without restraints) Performing minimization step: 1594. Total energy = 469.3827 kcal/mol (469.0146 without restraints) Performing minimization step: 1595. Total energy = 469.3226 kcal/mol (468.9549 without restraints) Performing minimization step: 1596. Total energy = 469.2627 kcal/mol (468.8952 without restraints) Performing minimization step: 1597. Total energy = 469.2031 kcal/mol (468.8357 without restraints) Performing minimization step: 1598. Total energy = 469.1431 kcal/mol (468.7759 without restraints) Performing minimization step: 1599. Total energy = 469.0834 kcal/mol (468.7164 without restraints) Performing minimization step: 1600. Total energy = 469.0239 kcal/mol (468.6571 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 468.9643 kcal/mol (468.5976 without restraints) Performing minimization step: 1602. Total energy = 468.9047 kcal/mol (468.5382 without restraints) Performing minimization step: 1603. Total energy = 468.8451 kcal/mol (468.4788 without restraints) Performing minimization step: 1604. Total energy = 468.7856 kcal/mol (468.4194 without restraints) Performing minimization step: 1605. Total energy = 468.7259 kcal/mol (468.3599 without restraints) Performing minimization step: 1606. Total energy = 468.6664 kcal/mol (468.3006 without restraints) Performing minimization step: 1607. Total energy = 468.6070 kcal/mol (468.2414 without restraints) Performing minimization step: 1608. Total energy = 468.5475 kcal/mol (468.1822 without restraints) Performing minimization step: 1609. Total energy = 468.4883 kcal/mol (468.1230 without restraints) Performing minimization step: 1610. Total energy = 468.4290 kcal/mol (468.0639 without restraints) Performing minimization step: 1611. Total energy = 468.3701 kcal/mol (468.0052 without restraints) Performing minimization step: 1612. Total energy = 468.3107 kcal/mol (467.9460 without restraints) Performing minimization step: 1613. Total energy = 468.2518 kcal/mol (467.8872 without restraints) Performing minimization step: 1614. Total energy = 468.1927 kcal/mol (467.8283 without restraints) Performing minimization step: 1615. Total energy = 468.1336 kcal/mol (467.7694 without restraints) Performing minimization step: 1616. Total energy = 468.0744 kcal/mol (467.7103 without restraints) Performing minimization step: 1617. Total energy = 468.0154 kcal/mol (467.6515 without restraints) Performing minimization step: 1618. Total energy = 467.9564 kcal/mol (467.5927 without restraints) Performing minimization step: 1619. Total energy = 467.8975 kcal/mol (467.5340 without restraints) Performing minimization step: 1620. Total energy = 467.8386 kcal/mol (467.4752 without restraints) Performing minimization step: 1621. Total energy = 467.7797 kcal/mol (467.4165 without restraints) Performing minimization step: 1622. Total energy = 467.7210 kcal/mol (467.3579 without restraints) Performing minimization step: 1623. Total energy = 467.6622 kcal/mol (467.2993 without restraints) Performing minimization step: 1624. Total energy = 467.6035 kcal/mol (467.2408 without restraints) Performing minimization step: 1625. Total energy = 467.5446 kcal/mol (467.1821 without restraints) Performing minimization step: 1626. Total energy = 467.4859 kcal/mol (467.1236 without restraints) Performing minimization step: 1627. Total energy = 467.4273 kcal/mol (467.0652 without restraints) Performing minimization step: 1628. Total energy = 467.3688 kcal/mol (467.0068 without restraints) Performing minimization step: 1629. Total energy = 467.3102 kcal/mol (466.9484 without restraints) Performing minimization step: 1630. Total energy = 467.2518 kcal/mol (466.8901 without restraints) Performing minimization step: 1631. Total energy = 467.1933 kcal/mol (466.8318 without restraints) Performing minimization step: 1632. Total energy = 467.1348 kcal/mol (466.7734 without restraints) Performing minimization step: 1633. Total energy = 467.0763 kcal/mol (466.7152 without restraints) Performing minimization step: 1634. Total energy = 467.0178 kcal/mol (466.6568 without restraints) Performing minimization step: 1635. Total energy = 466.9596 kcal/mol (466.5987 without restraints) Performing minimization step: 1636. Total energy = 466.9014 kcal/mol (466.5409 without restraints) Performing minimization step: 1637. Total energy = 466.8431 kcal/mol (466.4827 without restraints) Performing minimization step: 1638. Total energy = 466.7847 kcal/mol (466.4244 without restraints) Performing minimization step: 1639. Total energy = 466.7266 kcal/mol (466.3665 without restraints) Performing minimization step: 1640. Total energy = 466.6686 kcal/mol (466.3088 without restraints) Performing minimization step: 1641. Total energy = 466.6109 kcal/mol (466.2511 without restraints) Performing minimization step: 1642. Total energy = 466.5529 kcal/mol (466.1932 without restraints) Performing minimization step: 1643. Total energy = 466.4949 kcal/mol (466.1354 without restraints) Performing minimization step: 1644. Total energy = 466.4370 kcal/mol (466.0777 without restraints) Performing minimization step: 1645. Total energy = 466.3790 kcal/mol (466.0199 without restraints) Performing minimization step: 1646. Total energy = 466.3210 kcal/mol (465.9620 without restraints) Performing minimization step: 1647. Total energy = 466.2631 kcal/mol (465.9043 without restraints) Performing minimization step: 1648. Total energy = 466.2053 kcal/mol (465.8467 without restraints) Performing minimization step: 1649. Total energy = 466.1477 kcal/mol (465.7891 without restraints) Performing minimization step: 1650. Total energy = 466.0898 kcal/mol (465.7316 without restraints) Performing minimization step: 1651. Total energy = 466.0321 kcal/mol (465.6740 without restraints) Performing minimization step: 1652. Total energy = 465.9745 kcal/mol (465.6165 without restraints) Performing minimization step: 1653. Total energy = 465.9168 kcal/mol (465.5591 without restraints) Performing minimization step: 1654. Total energy = 465.8595 kcal/mol (465.5019 without restraints) Performing minimization step: 1655. Total energy = 465.8019 kcal/mol (465.4445 without restraints) Performing minimization step: 1656. Total energy = 465.7444 kcal/mol (465.3871 without restraints) Performing minimization step: 1657. Total energy = 465.6870 kcal/mol (465.3299 without restraints) Performing minimization step: 1658. Total energy = 465.6295 kcal/mol (465.2726 without restraints) Performing minimization step: 1659. Total energy = 465.5721 kcal/mol (465.2154 without restraints) Performing minimization step: 1660. Total energy = 465.5150 kcal/mol (465.1584 without restraints) Performing minimization step: 1661. Total energy = 465.4577 kcal/mol (465.1013 without restraints) Performing minimization step: 1662. Total energy = 465.4004 kcal/mol (465.0441 without restraints) Performing minimization step: 1663. Total energy = 465.3431 kcal/mol (464.9870 without restraints) Performing minimization step: 1664. Total energy = 465.2863 kcal/mol (464.9303 without restraints) Performing minimization step: 1665. Total energy = 465.2291 kcal/mol (464.8733 without restraints) Performing minimization step: 1666. Total energy = 465.1719 kcal/mol (464.8163 without restraints) Performing minimization step: 1667. Total energy = 465.1148 kcal/mol (464.7594 without restraints) Performing minimization step: 1668. Total energy = 465.0582 kcal/mol (464.7029 without restraints) Performing minimization step: 1669. Total energy = 465.0011 kcal/mol (464.6460 without restraints) Performing minimization step: 1670. Total energy = 464.9441 kcal/mol (464.5892 without restraints) Performing minimization step: 1671. Total energy = 464.8872 kcal/mol (464.5324 without restraints) Performing minimization step: 1672. Total energy = 464.8303 kcal/mol (464.4756 without restraints) Performing minimization step: 1673. Total energy = 464.7734 kcal/mol (464.4189 without restraints) Performing minimization step: 1674. Total energy = 464.7165 kcal/mol (464.3622 without restraints) Performing minimization step: 1675. Total energy = 464.6597 kcal/mol (464.3055 without restraints) Performing minimization step: 1676. Total energy = 464.6029 kcal/mol (464.2489 without restraints) Performing minimization step: 1677. Total energy = 464.5461 kcal/mol (464.1923 without restraints) Performing minimization step: 1678. Total energy = 464.4893 kcal/mol (464.1355 without restraints) Performing minimization step: 1679. Total energy = 464.4327 kcal/mol (464.0795 without restraints) Performing minimization step: 1680. Total energy = 464.3764 kcal/mol (464.0230 without restraints) Performing minimization step: 1681. Total energy = 464.3200 kcal/mol (463.9668 without restraints) Performing minimization step: 1682. Total energy = 464.2633 kcal/mol (463.9103 without restraints) Performing minimization step: 1683. Total energy = 464.2064 kcal/mol (463.8536 without restraints) Performing minimization step: 1684. Total energy = 464.1499 kcal/mol (463.7972 without restraints) Performing minimization step: 1685. Total energy = 464.0934 kcal/mol (463.7409 without restraints) Performing minimization step: 1686. Total energy = 464.0370 kcal/mol (463.6846 without restraints) Performing minimization step: 1687. Total energy = 463.9804 kcal/mol (463.6282 without restraints) Performing minimization step: 1688. Total energy = 463.9239 kcal/mol (463.5718 without restraints) Performing minimization step: 1689. Total energy = 463.8675 kcal/mol (463.5156 without restraints) Performing minimization step: 1690. Total energy = 463.8112 kcal/mol (463.4595 without restraints) Performing minimization step: 1691. Total energy = 463.7549 kcal/mol (463.4034 without restraints) Performing minimization step: 1692. Total energy = 463.6987 kcal/mol (463.3473 without restraints) Performing minimization step: 1693. Total energy = 463.6425 kcal/mol (463.2912 without restraints) Performing minimization step: 1694. Total energy = 463.5863 kcal/mol (463.2352 without restraints) Performing minimization step: 1695. Total energy = 463.5308 kcal/mol (463.1801 without restraints) Performing minimization step: 1696. Total energy = 463.4749 kcal/mol (463.1241 without restraints) Performing minimization step: 1697. Total energy = 463.4188 kcal/mol (463.0682 without restraints) Performing minimization step: 1698. Total energy = 463.3628 kcal/mol (463.0124 without restraints) Performing minimization step: 1699. Total energy = 463.3068 kcal/mol (462.9565 without restraints) Performing minimization step: 1700. Total energy = 463.2509 kcal/mol (462.9007 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 463.1954 kcal/mol (462.8454 without restraints) Performing minimization step: 1702. Total energy = 463.1394 kcal/mol (462.7897 without restraints) Performing minimization step: 1703. Total energy = 463.0836 kcal/mol (462.7340 without restraints) Performing minimization step: 1704. Total energy = 463.0279 kcal/mol (462.6785 without restraints) Performing minimization step: 1705. Total energy = 462.9722 kcal/mol (462.6229 without restraints) Performing minimization step: 1706. Total energy = 462.9164 kcal/mol (462.5673 without restraints) Performing minimization step: 1707. Total energy = 462.8605 kcal/mol (462.5115 without restraints) Performing minimization step: 1708. Total energy = 462.8050 kcal/mol (462.4562 without restraints) Performing minimization step: 1709. Total energy = 462.7494 kcal/mol (462.4007 without restraints) Performing minimization step: 1710. Total energy = 462.6937 kcal/mol (462.3452 without restraints) Performing minimization step: 1711. Total energy = 462.6382 kcal/mol (462.2899 without restraints) Performing minimization step: 1712. Total energy = 462.5828 kcal/mol (462.2346 without restraints) Performing minimization step: 1713. Total energy = 462.5273 kcal/mol (462.1792 without restraints) Performing minimization step: 1714. Total energy = 462.4719 kcal/mol (462.1241 without restraints) Performing minimization step: 1715. Total energy = 462.4165 kcal/mol (462.0688 without restraints) Performing minimization step: 1716. Total energy = 462.3612 kcal/mol (462.0137 without restraints) Performing minimization step: 1717. Total energy = 462.3059 kcal/mol (461.9585 without restraints) Performing minimization step: 1718. Total energy = 462.2506 kcal/mol (461.9033 without restraints) Performing minimization step: 1719. Total energy = 462.1952 kcal/mol (461.8481 without restraints) Performing minimization step: 1720. Total energy = 462.1401 kcal/mol (461.7932 without restraints) Performing minimization step: 1721. Total energy = 462.0849 kcal/mol (461.7381 without restraints) Performing minimization step: 1722. Total energy = 462.0298 kcal/mol (461.6832 without restraints) Performing minimization step: 1723. Total energy = 461.9746 kcal/mol (461.6281 without restraints) Performing minimization step: 1724. Total energy = 461.9195 kcal/mol (461.5731 without restraints) Performing minimization step: 1725. Total energy = 461.8644 kcal/mol (461.5182 without restraints) Performing minimization step: 1726. Total energy = 461.8093 kcal/mol (461.4632 without restraints) Performing minimization step: 1727. Total energy = 461.7542 kcal/mol (461.4083 without restraints) Performing minimization step: 1728. Total energy = 461.6994 kcal/mol (461.3537 without restraints) Performing minimization step: 1729. Total energy = 461.6444 kcal/mol (461.2988 without restraints) Performing minimization step: 1730. Total energy = 461.5894 kcal/mol (461.2440 without restraints) Performing minimization step: 1731. Total energy = 461.5345 kcal/mol (461.1892 without restraints) Performing minimization step: 1732. Total energy = 461.4791 kcal/mol (461.1340 without restraints) Performing minimization step: 1733. Total energy = 461.4243 kcal/mol (461.0793 without restraints) Performing minimization step: 1734. Total energy = 461.3695 kcal/mol (461.0247 without restraints) Performing minimization step: 1735. Total energy = 461.3147 kcal/mol (460.9700 without restraints) Performing minimization step: 1736. Total energy = 461.2599 kcal/mol (460.9154 without restraints) Performing minimization step: 1737. Total energy = 461.2053 kcal/mol (460.8610 without restraints) Performing minimization step: 1738. Total energy = 461.1513 kcal/mol (460.8071 without restraints) Performing minimization step: 1739. Total energy = 461.0967 kcal/mol (460.7526 without restraints) Performing minimization step: 1740. Total energy = 461.0420 kcal/mol (460.6981 without restraints) Performing minimization step: 1741. Total energy = 460.9872 kcal/mol (460.6434 without restraints) Performing minimization step: 1742. Total energy = 460.9327 kcal/mol (460.5892 without restraints) Performing minimization step: 1743. Total energy = 460.8788 kcal/mol (460.5354 without restraints) Performing minimization step: 1744. Total energy = 460.8243 kcal/mol (460.4810 without restraints) Performing minimization step: 1745. Total energy = 460.7698 kcal/mol (460.4267 without restraints) Performing minimization step: 1746. Total energy = 460.7154 kcal/mol (460.3724 without restraints) Performing minimization step: 1747. Total energy = 460.6609 kcal/mol (460.3181 without restraints) Performing minimization step: 1748. Total energy = 460.6066 kcal/mol (460.2639 without restraints) Performing minimization step: 1749. Total energy = 460.5523 kcal/mol (460.2097 without restraints) Performing minimization step: 1750. Total energy = 460.4979 kcal/mol (460.1555 without restraints) Performing minimization step: 1751. Total energy = 460.4436 kcal/mol (460.1013 without restraints) Performing minimization step: 1752. Total energy = 460.3893 kcal/mol (460.0472 without restraints) Performing minimization step: 1753. Total energy = 460.3351 kcal/mol (459.9931 without restraints) Performing minimization step: 1754. Total energy = 460.2809 kcal/mol (459.9391 without restraints) Performing minimization step: 1755. Total energy = 460.2263 kcal/mol (459.8846 without restraints) Performing minimization step: 1756. Total energy = 460.1719 kcal/mol (459.8304 without restraints) Performing minimization step: 1757. Total energy = 460.1178 kcal/mol (459.7764 without restraints) Performing minimization step: 1758. Total energy = 460.0638 kcal/mol (459.7225 without restraints) Performing minimization step: 1759. Total energy = 460.0096 kcal/mol (459.6686 without restraints) Performing minimization step: 1760. Total energy = 459.9556 kcal/mol (459.6147 without restraints) Performing minimization step: 1761. Total energy = 459.9016 kcal/mol (459.5609 without restraints) Performing minimization step: 1762. Total energy = 459.8475 kcal/mol (459.5069 without restraints) Performing minimization step: 1763. Total energy = 459.7936 kcal/mol (459.4533 without restraints) Performing minimization step: 1764. Total energy = 459.7400 kcal/mol (459.3997 without restraints) Performing minimization step: 1765. Total energy = 459.6862 kcal/mol (459.3460 without restraints) Performing minimization step: 1766. Total energy = 459.6323 kcal/mol (459.2923 without restraints) Performing minimization step: 1767. Total energy = 459.5785 kcal/mol (459.2386 without restraints) Performing minimization step: 1768. Total energy = 459.5245 kcal/mol (459.1848 without restraints) Performing minimization step: 1769. Total energy = 459.4708 kcal/mol (459.1312 without restraints) Performing minimization step: 1770. Total energy = 459.4171 kcal/mol (459.0777 without restraints) Performing minimization step: 1771. Total energy = 459.3635 kcal/mol (459.0242 without restraints) Performing minimization step: 1772. Total energy = 459.3098 kcal/mol (458.9707 without restraints) Performing minimization step: 1773. Total energy = 459.2562 kcal/mol (458.9172 without restraints) Performing minimization step: 1774. Total energy = 459.2026 kcal/mol (458.8637 without restraints) Performing minimization step: 1775. Total energy = 459.1490 kcal/mol (458.8103 without restraints) Performing minimization step: 1776. Total energy = 459.0955 kcal/mol (458.7569 without restraints) Performing minimization step: 1777. Total energy = 459.0420 kcal/mol (458.7036 without restraints) Performing minimization step: 1778. Total energy = 458.9885 kcal/mol (458.6502 without restraints) Performing minimization step: 1779. Total energy = 458.9351 kcal/mol (458.5969 without restraints) Performing minimization step: 1780. Total energy = 458.8816 kcal/mol (458.5437 without restraints) Performing minimization step: 1781. Total energy = 458.8283 kcal/mol (458.4904 without restraints) Performing minimization step: 1782. Total energy = 458.7747 kcal/mol (458.4370 without restraints) Performing minimization step: 1783. Total energy = 458.7220 kcal/mol (458.3844 without restraints) Performing minimization step: 1784. Total energy = 458.6689 kcal/mol (458.3315 without restraints) Performing minimization step: 1785. Total energy = 458.6156 kcal/mol (458.2784 without restraints) Performing minimization step: 1786. Total energy = 458.5624 kcal/mol (458.2253 without restraints) Performing minimization step: 1787. Total energy = 458.5093 kcal/mol (458.1724 without restraints) Performing minimization step: 1788. Total energy = 458.4564 kcal/mol (458.1195 without restraints) Performing minimization step: 1789. Total energy = 458.4033 kcal/mol (458.0667 without restraints) Performing minimization step: 1790. Total energy = 458.3503 kcal/mol (458.0138 without restraints) Performing minimization step: 1791. Total energy = 458.2974 kcal/mol (457.9612 without restraints) Performing minimization step: 1792. Total energy = 458.2445 kcal/mol (457.9083 without restraints) Performing minimization step: 1793. Total energy = 458.1915 kcal/mol (457.8554 without restraints) Performing minimization step: 1794. Total energy = 458.1387 kcal/mol (457.8027 without restraints) Performing minimization step: 1795. Total energy = 458.0857 kcal/mol (457.7499 without restraints) Performing minimization step: 1796. Total energy = 458.0327 kcal/mol (457.6970 without restraints) Performing minimization step: 1797. Total energy = 457.9798 kcal/mol (457.6443 without restraints) Performing minimization step: 1798. Total energy = 457.9271 kcal/mol (457.5917 without restraints) Performing minimization step: 1799. Total energy = 457.8742 kcal/mol (457.5389 without restraints) Performing minimization step: 1800. Total energy = 457.8216 kcal/mol (457.4865 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 457.7691 kcal/mol (457.4342 without restraints) Performing minimization step: 1802. Total energy = 457.7165 kcal/mol (457.3817 without restraints) Performing minimization step: 1803. Total energy = 457.6638 kcal/mol (457.3291 without restraints) Performing minimization step: 1804. Total energy = 457.6112 kcal/mol (457.2768 without restraints) Performing minimization step: 1805. Total energy = 457.5586 kcal/mol (457.2242 without restraints) Performing minimization step: 1806. Total energy = 457.5062 kcal/mol (457.1720 without restraints) Performing minimization step: 1807. Total energy = 457.4536 kcal/mol (457.1195 without restraints) Performing minimization step: 1808. Total energy = 457.4010 kcal/mol (457.0670 without restraints) Performing minimization step: 1809. Total energy = 457.3484 kcal/mol (457.0146 without restraints) Performing minimization step: 1810. Total energy = 457.2959 kcal/mol (456.9622 without restraints) Performing minimization step: 1811. Total energy = 457.2434 kcal/mol (456.9098 without restraints) Performing minimization step: 1812. Total energy = 457.1909 kcal/mol (456.8575 without restraints) Performing minimization step: 1813. Total energy = 457.1385 kcal/mol (456.8052 without restraints) Performing minimization step: 1814. Total energy = 457.0861 kcal/mol (456.7529 without restraints) Performing minimization step: 1815. Total energy = 457.0337 kcal/mol (456.7007 without restraints) Performing minimization step: 1816. Total energy = 456.9816 kcal/mol (456.6487 without restraints) Performing minimization step: 1817. Total energy = 456.9293 kcal/mol (456.5965 without restraints) Performing minimization step: 1818. Total energy = 456.8769 kcal/mol (456.5443 without restraints) Performing minimization step: 1819. Total energy = 456.8246 kcal/mol (456.4921 without restraints) Performing minimization step: 1820. Total energy = 456.7723 kcal/mol (456.4400 without restraints) Performing minimization step: 1821. Total energy = 456.7203 kcal/mol (456.3881 without restraints) Performing minimization step: 1822. Total energy = 456.6683 kcal/mol (456.3362 without restraints) Performing minimization step: 1823. Total energy = 456.6161 kcal/mol (456.2844 without restraints) Performing minimization step: 1824. Total energy = 456.5642 kcal/mol (456.2324 without restraints) Performing minimization step: 1825. Total energy = 456.5121 kcal/mol (456.1804 without restraints) Performing minimization step: 1826. Total energy = 456.4598 kcal/mol (456.1283 without restraints) Performing minimization step: 1827. Total energy = 456.4077 kcal/mol (456.0764 without restraints) Performing minimization step: 1828. Total energy = 456.3557 kcal/mol (456.0245 without restraints) Performing minimization step: 1829. Total energy = 456.3037 kcal/mol (455.9726 without restraints) Performing minimization step: 1830. Total energy = 456.2517 kcal/mol (455.9208 without restraints) Performing minimization step: 1831. Total energy = 456.1998 kcal/mol (455.8690 without restraints) Performing minimization step: 1832. Total energy = 456.1479 kcal/mol (455.8172 without restraints) Performing minimization step: 1833. Total energy = 456.0960 kcal/mol (455.7654 without restraints) Performing minimization step: 1834. Total energy = 456.0443 kcal/mol (455.7140 without restraints) Performing minimization step: 1835. Total energy = 455.9926 kcal/mol (455.6623 without restraints) Performing minimization step: 1836. Total energy = 455.9408 kcal/mol (455.6106 without restraints) Performing minimization step: 1837. Total energy = 455.8890 kcal/mol (455.5590 without restraints) Performing minimization step: 1838. Total energy = 455.8372 kcal/mol (455.5073 without restraints) Performing minimization step: 1839. Total energy = 455.7855 kcal/mol (455.4557 without restraints) Performing minimization step: 1840. Total energy = 455.7338 kcal/mol (455.4042 without restraints) Performing minimization step: 1841. Total energy = 455.6819 kcal/mol (455.3524 without restraints) Performing minimization step: 1842. Total energy = 455.6303 kcal/mol (455.3010 without restraints) Performing minimization step: 1843. Total energy = 455.5787 kcal/mol (455.2495 without restraints) Performing minimization step: 1844. Total energy = 455.5271 kcal/mol (455.1980 without restraints) Performing minimization step: 1845. Total energy = 455.4756 kcal/mol (455.1468 without restraints) Performing minimization step: 1846. Total energy = 455.4242 kcal/mol (455.0954 without restraints) Performing minimization step: 1847. Total energy = 455.3727 kcal/mol (455.0440 without restraints) Performing minimization step: 1848. Total energy = 455.3212 kcal/mol (454.9927 without restraints) Performing minimization step: 1849. Total energy = 455.2695 kcal/mol (454.9411 without restraints) Performing minimization step: 1850. Total energy = 455.2180 kcal/mol (454.8898 without restraints) Performing minimization step: 1851. Total energy = 455.1666 kcal/mol (454.8385 without restraints) Performing minimization step: 1852. Total energy = 455.1155 kcal/mol (454.7875 without restraints) Performing minimization step: 1853. Total energy = 455.0646 kcal/mol (454.7367 without restraints) Performing minimization step: 1854. Total energy = 455.0132 kcal/mol (454.6855 without restraints) Performing minimization step: 1855. Total energy = 454.9619 kcal/mol (454.6343 without restraints) Performing minimization step: 1856. Total energy = 454.9107 kcal/mol (454.5832 without restraints) Performing minimization step: 1857. Total energy = 454.8594 kcal/mol (454.5321 without restraints) Performing minimization step: 1858. Total energy = 454.8082 kcal/mol (454.4810 without restraints) Performing minimization step: 1859. Total energy = 454.7570 kcal/mol (454.4299 without restraints) Performing minimization step: 1860. Total energy = 454.7059 kcal/mol (454.3789 without restraints) Performing minimization step: 1861. Total energy = 454.6547 kcal/mol (454.3279 without restraints) Performing minimization step: 1862. Total energy = 454.6037 kcal/mol (454.2770 without restraints) Performing minimization step: 1863. Total energy = 454.5523 kcal/mol (454.2256 without restraints) Performing minimization step: 1864. Total energy = 454.5011 kcal/mol (454.1747 without restraints) Performing minimization step: 1865. Total energy = 454.4503 kcal/mol (454.1243 without restraints) Performing minimization step: 1866. Total energy = 454.3998 kcal/mol (454.0736 without restraints) Performing minimization step: 1867. Total energy = 454.3490 kcal/mol (454.0230 without restraints) Performing minimization step: 1868. Total energy = 454.2982 kcal/mol (453.9723 without restraints) Performing minimization step: 1869. Total energy = 454.2471 kcal/mol (453.9213 without restraints) Performing minimization step: 1870. Total energy = 454.1962 kcal/mol (453.8706 without restraints) Performing minimization step: 1871. Total energy = 454.1453 kcal/mol (453.8198 without restraints) Performing minimization step: 1872. Total energy = 454.0945 kcal/mol (453.7691 without restraints) Performing minimization step: 1873. Total energy = 454.0439 kcal/mol (453.7186 without restraints) Performing minimization step: 1874. Total energy = 453.9930 kcal/mol (453.6679 without restraints) Performing minimization step: 1875. Total energy = 453.9430 kcal/mol (453.6179 without restraints) Performing minimization step: 1876. Total energy = 453.8924 kcal/mol (453.5676 without restraints) Performing minimization step: 1877. Total energy = 453.8417 kcal/mol (453.5170 without restraints) Performing minimization step: 1878. Total energy = 453.7910 kcal/mol (453.4664 without restraints) Performing minimization step: 1879. Total energy = 453.7403 kcal/mol (453.4158 without restraints) Performing minimization step: 1880. Total energy = 453.6897 kcal/mol (453.3653 without restraints) Performing minimization step: 1881. Total energy = 453.6391 kcal/mol (453.3149 without restraints) Performing minimization step: 1882. Total energy = 453.5885 kcal/mol (453.2644 without restraints) Performing minimization step: 1883. Total energy = 453.5380 kcal/mol (453.2140 without restraints) Performing minimization step: 1884. Total energy = 453.4874 kcal/mol (453.1636 without restraints) Performing minimization step: 1885. Total energy = 453.4370 kcal/mol (453.1132 without restraints) Performing minimization step: 1886. Total energy = 453.3865 kcal/mol (453.0629 without restraints) Performing minimization step: 1887. Total energy = 453.3361 kcal/mol (453.0126 without restraints) Performing minimization step: 1888. Total energy = 453.2856 kcal/mol (452.9623 without restraints) Performing minimization step: 1889. Total energy = 453.2352 kcal/mol (452.9120 without restraints) Performing minimization step: 1890. Total energy = 453.1847 kcal/mol (452.8615 without restraints) Performing minimization step: 1891. Total energy = 453.1339 kcal/mol (452.8110 without restraints) Performing minimization step: 1892. Total energy = 453.0834 kcal/mol (452.7606 without restraints) Performing minimization step: 1893. Total energy = 453.0331 kcal/mol (452.7104 without restraints) Performing minimization step: 1894. Total energy = 452.9828 kcal/mol (452.6602 without restraints) Performing minimization step: 1895. Total energy = 452.9326 kcal/mol (452.6101 without restraints) Performing minimization step: 1896. Total energy = 452.8823 kcal/mol (452.5600 without restraints) Performing minimization step: 1897. Total energy = 452.8321 kcal/mol (452.5099 without restraints) Performing minimization step: 1898. Total energy = 452.7820 kcal/mol (452.4599 without restraints) Performing minimization step: 1899. Total energy = 452.7316 kcal/mol (452.4097 without restraints) Performing minimization step: 1900. Total energy = 452.6813 kcal/mol (452.3595 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 452.6312 kcal/mol (452.3095 without restraints) Performing minimization step: 1902. Total energy = 452.5811 kcal/mol (452.2595 without restraints) Performing minimization step: 1903. Total energy = 452.5311 kcal/mol (452.2096 without restraints) Performing minimization step: 1904. Total energy = 452.4811 kcal/mol (452.1597 without restraints) Performing minimization step: 1905. Total energy = 452.4313 kcal/mol (452.1101 without restraints) Performing minimization step: 1906. Total energy = 452.3814 kcal/mol (452.0603 without restraints) Performing minimization step: 1907. Total energy = 452.3314 kcal/mol (452.0104 without restraints) Performing minimization step: 1908. Total energy = 452.2815 kcal/mol (451.9607 without restraints) Performing minimization step: 1909. Total energy = 452.2316 kcal/mol (451.9109 without restraints) Performing minimization step: 1910. Total energy = 452.1817 kcal/mol (451.8611 without restraints) Performing minimization step: 1911. Total energy = 452.1318 kcal/mol (451.8113 without restraints) Performing minimization step: 1912. Total energy = 452.0820 kcal/mol (451.7616 without restraints) Performing minimization step: 1913. Total energy = 452.0322 kcal/mol (451.7119 without restraints) Performing minimization step: 1914. Total energy = 451.9822 kcal/mol (451.6621 without restraints) Performing minimization step: 1915. Total energy = 451.9327 kcal/mol (451.6128 without restraints) Performing minimization step: 1916. Total energy = 451.8829 kcal/mol (451.5630 without restraints) Performing minimization step: 1917. Total energy = 451.8332 kcal/mol (451.5134 without restraints) Performing minimization step: 1918. Total energy = 451.7835 kcal/mol (451.4638 without restraints) Performing minimization step: 1919. Total energy = 451.7338 kcal/mol (451.4143 without restraints) Performing minimization step: 1920. Total energy = 451.6842 kcal/mol (451.3648 without restraints) Performing minimization step: 1921. Total energy = 451.6346 kcal/mol (451.3153 without restraints) Performing minimization step: 1922. Total energy = 451.5850 kcal/mol (451.2658 without restraints) Performing minimization step: 1923. Total energy = 451.5355 kcal/mol (451.2164 without restraints) Performing minimization step: 1924. Total energy = 451.4859 kcal/mol (451.1670 without restraints) Performing minimization step: 1925. Total energy = 451.4364 kcal/mol (451.1176 without restraints) Performing minimization step: 1926. Total energy = 451.3870 kcal/mol (451.0683 without restraints) Performing minimization step: 1927. Total energy = 451.3375 kcal/mol (451.0189 without restraints) Performing minimization step: 1928. Total energy = 451.2882 kcal/mol (450.9698 without restraints) Performing minimization step: 1929. Total energy = 451.2386 kcal/mol (450.9203 without restraints) Performing minimization step: 1930. Total energy = 451.1892 kcal/mol (450.8710 without restraints) Performing minimization step: 1931. Total energy = 451.1400 kcal/mol (450.8220 without restraints) Performing minimization step: 1932. Total energy = 451.0910 kcal/mol (450.7731 without restraints) Performing minimization step: 1933. Total energy = 451.0417 kcal/mol (450.7239 without restraints) Performing minimization step: 1934. Total energy = 450.9924 kcal/mol (450.6747 without restraints) Performing minimization step: 1935. Total energy = 450.9431 kcal/mol (450.6255 without restraints) Performing minimization step: 1936. Total energy = 450.8941 kcal/mol (450.5766 without restraints) Performing minimization step: 1937. Total energy = 450.8449 kcal/mol (450.5275 without restraints) Performing minimization step: 1938. Total energy = 450.7957 kcal/mol (450.4785 without restraints) Performing minimization step: 1939. Total energy = 450.7466 kcal/mol (450.4295 without restraints) Performing minimization step: 1940. Total energy = 450.6974 kcal/mol (450.3804 without restraints) Performing minimization step: 1941. Total energy = 450.6483 kcal/mol (450.3314 without restraints) Performing minimization step: 1942. Total energy = 450.5995 kcal/mol (450.2827 without restraints) Performing minimization step: 1943. Total energy = 450.5504 kcal/mol (450.2338 without restraints) Performing minimization step: 1944. Total energy = 450.5013 kcal/mol (450.1848 without restraints) Performing minimization step: 1945. Total energy = 450.4523 kcal/mol (450.1359 without restraints) Performing minimization step: 1946. Total energy = 450.4029 kcal/mol (450.0866 without restraints) Performing minimization step: 1947. Total energy = 450.3539 kcal/mol (450.0378 without restraints) Performing minimization step: 1948. Total energy = 450.3050 kcal/mol (449.9889 without restraints) Performing minimization step: 1949. Total energy = 450.2563 kcal/mol (449.9403 without restraints) Performing minimization step: 1950. Total energy = 450.2074 kcal/mol (449.8915 without restraints) Performing minimization step: 1951. Total energy = 450.1584 kcal/mol (449.8427 without restraints) Performing minimization step: 1952. Total energy = 450.1095 kcal/mol (449.7939 without restraints) Performing minimization step: 1953. Total energy = 450.0605 kcal/mol (449.7449 without restraints) Performing minimization step: 1954. Total energy = 450.0116 kcal/mol (449.6962 without restraints) Performing minimization step: 1955. Total energy = 449.9628 kcal/mol (449.6476 without restraints) Performing minimization step: 1956. Total energy = 449.9144 kcal/mol (449.5994 without restraints) Performing minimization step: 1957. Total energy = 449.8656 kcal/mol (449.5505 without restraints) Performing minimization step: 1958. Total energy = 449.8168 kcal/mol (449.5019 without restraints) Performing minimization step: 1959. Total energy = 449.7681 kcal/mol (449.4533 without restraints) Performing minimization step: 1960. Total energy = 449.7195 kcal/mol (449.4048 without restraints) Performing minimization step: 1961. Total energy = 449.6712 kcal/mol (449.3566 without restraints) Performing minimization step: 1962. Total energy = 449.6226 kcal/mol (449.3082 without restraints) Performing minimization step: 1963. Total energy = 449.5742 kcal/mol (449.2599 without restraints) Performing minimization step: 1964. Total energy = 449.5256 kcal/mol (449.2114 without restraints) Performing minimization step: 1965. Total energy = 449.4772 kcal/mol (449.1631 without restraints) Performing minimization step: 1966. Total energy = 449.4289 kcal/mol (449.1149 without restraints) Performing minimization step: 1967. Total energy = 449.3804 kcal/mol (449.0665 without restraints) Performing minimization step: 1968. Total energy = 449.3317 kcal/mol (449.0179 without restraints) Performing minimization step: 1969. Total energy = 449.2831 kcal/mol (448.9693 without restraints) Performing minimization step: 1970. Total energy = 449.2346 kcal/mol (448.9210 without restraints) Performing minimization step: 1971. Total energy = 449.1860 kcal/mol (448.8725 without restraints) Performing minimization step: 1972. Total energy = 449.1376 kcal/mol (448.8243 without restraints) Performing minimization step: 1973. Total energy = 449.0892 kcal/mol (448.7760 without restraints) Performing minimization step: 1974. Total energy = 449.0409 kcal/mol (448.7278 without restraints) Performing minimization step: 1975. Total energy = 448.9925 kcal/mol (448.6795 without restraints) Performing minimization step: 1976. Total energy = 448.9442 kcal/mol (448.6314 without restraints) Performing minimization step: 1977. Total energy = 448.8960 kcal/mol (448.5832 without restraints) Performing minimization step: 1978. Total energy = 448.8477 kcal/mol (448.5351 without restraints) Performing minimization step: 1979. Total energy = 448.7995 kcal/mol (448.4869 without restraints) Performing minimization step: 1980. Total energy = 448.7513 kcal/mol (448.4388 without restraints) Performing minimization step: 1981. Total energy = 448.7031 kcal/mol (448.3908 without restraints) Performing minimization step: 1982. Total energy = 448.6547 kcal/mol (448.3425 without restraints) Performing minimization step: 1983. Total energy = 448.6065 kcal/mol (448.2944 without restraints) Performing minimization step: 1984. Total energy = 448.5584 kcal/mol (448.2464 without restraints) Performing minimization step: 1985. Total energy = 448.5103 kcal/mol (448.1984 without restraints) Performing minimization step: 1986. Total energy = 448.4624 kcal/mol (448.1507 without restraints) Performing minimization step: 1987. Total energy = 448.4144 kcal/mol (448.1029 without restraints) Performing minimization step: 1988. Total energy = 448.3665 kcal/mol (448.0550 without restraints) Performing minimization step: 1989. Total energy = 448.3185 kcal/mol (448.0071 without restraints) Performing minimization step: 1990. Total energy = 448.2712 kcal/mol (447.9599 without restraints) Performing minimization step: 1991. Total energy = 448.2232 kcal/mol (447.9120 without restraints) Performing minimization step: 1992. Total energy = 448.1753 kcal/mol (447.8642 without restraints) Performing minimization step: 1993. Total energy = 448.1274 kcal/mol (447.8164 without restraints) Performing minimization step: 1994. Total energy = 448.0795 kcal/mol (447.7686 without restraints) Performing minimization step: 1995. Total energy = 448.0316 kcal/mol (447.7209 without restraints) Performing minimization step: 1996. Total energy = 447.9838 kcal/mol (447.6732 without restraints) Performing minimization step: 1997. Total energy = 447.9358 kcal/mol (447.6253 without restraints) Performing minimization step: 1998. Total energy = 447.8881 kcal/mol (447.5777 without restraints) Performing minimization step: 1999. Total energy = 447.8404 kcal/mol (447.5301 without restraints) Performing minimization step: 2000. Total energy = 447.7928 kcal/mol (447.4826 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 447.7451 kcal/mol (447.4349 without restraints) Performing minimization step: 2002. Total energy = 447.6972 kcal/mol (447.3871 without restraints) Performing minimization step: 2003. Total energy = 447.6494 kcal/mol (447.3395 without restraints) Performing minimization step: 2004. Total energy = 447.6017 kcal/mol (447.2918 without restraints) Performing minimization step: 2005. Total energy = 447.5538 kcal/mol (447.2441 without restraints) Performing minimization step: 2006. Total energy = 447.5059 kcal/mol (447.1963 without restraints) Performing minimization step: 2007. Total energy = 447.4583 kcal/mol (447.1488 without restraints) Performing minimization step: 2008. Total energy = 447.4108 kcal/mol (447.1015 without restraints) Performing minimization step: 2009. Total energy = 447.3633 kcal/mol (447.0541 without restraints) Performing minimization step: 2010. Total energy = 447.3158 kcal/mol (447.0066 without restraints) Performing minimization step: 2011. Total energy = 447.2684 kcal/mol (446.9594 without restraints) Performing minimization step: 2012. Total energy = 447.2209 kcal/mol (446.9120 without restraints) Performing minimization step: 2013. Total energy = 447.1732 kcal/mol (446.8644 without restraints) Performing minimization step: 2014. Total energy = 447.1258 kcal/mol (446.8171 without restraints) Performing minimization step: 2015. Total energy = 447.0783 kcal/mol (446.7697 without restraints) Performing minimization step: 2016. Total energy = 447.0309 kcal/mol (446.7224 without restraints) Performing minimization step: 2017. Total energy = 446.9835 kcal/mol (446.6752 without restraints) Performing minimization step: 2018. Total energy = 446.9362 kcal/mol (446.6279 without restraints) Performing minimization step: 2019. Total energy = 446.8889 kcal/mol (446.5807 without restraints) Performing minimization step: 2020. Total energy = 446.8415 kcal/mol (446.5335 without restraints) Performing minimization step: 2021. Total energy = 446.7942 kcal/mol (446.4863 without restraints) Performing minimization step: 2022. Total energy = 446.7470 kcal/mol (446.4391 without restraints) Performing minimization step: 2023. Total energy = 446.6997 kcal/mol (446.3920 without restraints) Performing minimization step: 2024. Total energy = 446.6527 kcal/mol (446.3451 without restraints) Performing minimization step: 2025. Total energy = 446.6055 kcal/mol (446.2980 without restraints) Performing minimization step: 2026. Total energy = 446.5583 kcal/mol (446.2509 without restraints) Performing minimization step: 2027. Total energy = 446.5109 kcal/mol (446.2036 without restraints) Performing minimization step: 2028. Total energy = 446.4639 kcal/mol (446.1568 without restraints) Performing minimization step: 2029. Total energy = 446.4168 kcal/mol (446.1097 without restraints) Performing minimization step: 2030. Total energy = 446.3701 kcal/mol (446.0632 without restraints) Performing minimization step: 2031. Total energy = 446.3231 kcal/mol (446.0162 without restraints) Performing minimization step: 2032. Total energy = 446.2760 kcal/mol (445.9692 without restraints) Performing minimization step: 2033. Total energy = 446.2290 kcal/mol (445.9223 without restraints) Performing minimization step: 2034. Total energy = 446.1821 kcal/mol (445.8755 without restraints) Performing minimization step: 2035. Total energy = 446.1351 kcal/mol (445.8286 without restraints) Performing minimization step: 2036. Total energy = 446.0882 kcal/mol (445.7818 without restraints) Performing minimization step: 2037. Total energy = 446.0412 kcal/mol (445.7349 without restraints) Performing minimization step: 2038. Total energy = 445.9943 kcal/mol (445.6881 without restraints) Performing minimization step: 2039. Total energy = 445.9474 kcal/mol (445.6413 without restraints) Performing minimization step: 2040. Total energy = 445.9005 kcal/mol (445.5945 without restraints) Performing minimization step: 2041. Total energy = 445.8536 kcal/mol (445.5477 without restraints) Performing minimization step: 2042. Total energy = 445.8068 kcal/mol (445.5010 without restraints) Performing minimization step: 2043. Total energy = 445.7598 kcal/mol (445.4541 without restraints) Performing minimization step: 2044. Total energy = 445.7130 kcal/mol (445.4074 without restraints) Performing minimization step: 2045. Total energy = 445.6663 kcal/mol (445.3608 without restraints) Performing minimization step: 2046. Total energy = 445.6192 kcal/mol (445.3138 without restraints) Performing minimization step: 2047. Total energy = 445.5725 kcal/mol (445.2672 without restraints) Performing minimization step: 2048. Total energy = 445.5259 kcal/mol (445.2208 without restraints) Performing minimization step: 2049. Total energy = 445.4792 kcal/mol (445.1742 without restraints) Performing minimization step: 2050. Total energy = 445.4326 kcal/mol (445.1276 without restraints) Performing minimization step: 2051. Total energy = 445.3859 kcal/mol (445.0811 without restraints) Performing minimization step: 2052. Total energy = 445.3392 kcal/mol (445.0342 without restraints) Performing minimization step: 2053. Total energy = 445.2923 kcal/mol (444.9877 without restraints) Performing minimization step: 2054. Total energy = 445.2462 kcal/mol (444.9418 without restraints) Performing minimization step: 2055. Total energy = 445.1998 kcal/mol (444.8953 without restraints) Performing minimization step: 2056. Total energy = 445.1532 kcal/mol (444.8489 without restraints) Performing minimization step: 2057. Total energy = 445.1067 kcal/mol (444.8024 without restraints) Performing minimization step: 2058. Total energy = 445.0604 kcal/mol (444.7564 without restraints) Performing minimization step: 2059. Total energy = 445.0141 kcal/mol (444.7100 without restraints) Performing minimization step: 2060. Total energy = 444.9676 kcal/mol (444.6637 without restraints) Performing minimization step: 2061. Total energy = 444.9212 kcal/mol (444.6173 without restraints) Performing minimization step: 2062. Total energy = 444.8748 kcal/mol (444.5710 without restraints) Performing minimization step: 2063. Total energy = 444.8284 kcal/mol (444.5247 without restraints) Performing minimization step: 2064. Total energy = 444.7820 kcal/mol (444.4784 without restraints) Performing minimization step: 2065. Total energy = 444.7356 kcal/mol (444.4322 without restraints) Performing minimization step: 2066. Total energy = 444.6893 kcal/mol (444.3859 without restraints) Performing minimization step: 2067. Total energy = 444.6432 kcal/mol (444.3399 without restraints) Performing minimization step: 2068. Total energy = 444.5967 kcal/mol (444.2935 without restraints) Performing minimization step: 2069. Total energy = 444.5505 kcal/mol (444.2474 without restraints) Performing minimization step: 2070. Total energy = 444.5043 kcal/mol (444.2015 without restraints) Performing minimization step: 2071. Total energy = 444.4582 kcal/mol (444.1553 without restraints) Performing minimization step: 2072. Total energy = 444.4120 kcal/mol (444.1092 without restraints) Performing minimization step: 2073. Total energy = 444.3655 kcal/mol (444.0628 without restraints) Performing minimization step: 2074. Total energy = 444.3193 kcal/mol (444.0167 without restraints) Performing minimization step: 2075. Total energy = 444.2732 kcal/mol (443.9707 without restraints) Performing minimization step: 2076. Total energy = 444.2270 kcal/mol (443.9246 without restraints) Performing minimization step: 2077. Total energy = 444.1809 kcal/mol (443.8786 without restraints) Performing minimization step: 2078. Total energy = 444.1349 kcal/mol (443.8327 without restraints) Performing minimization step: 2079. Total energy = 444.0888 kcal/mol (443.7867 without restraints) Performing minimization step: 2080. Total energy = 444.0426 kcal/mol (443.7407 without restraints) Performing minimization step: 2081. Total energy = 443.9968 kcal/mol (443.6950 without restraints) Performing minimization step: 2082. Total energy = 443.9509 kcal/mol (443.6491 without restraints) Performing minimization step: 2083. Total energy = 443.9049 kcal/mol (443.6032 without restraints) Performing minimization step: 2084. Total energy = 443.8589 kcal/mol (443.5573 without restraints) Performing minimization step: 2085. Total energy = 443.8130 kcal/mol (443.5115 without restraints) Performing minimization step: 2086. Total energy = 443.7671 kcal/mol (443.4656 without restraints) Performing minimization step: 2087. Total energy = 443.7212 kcal/mol (443.4198 without restraints) Performing minimization step: 2088. Total energy = 443.6753 kcal/mol (443.3741 without restraints) Performing minimization step: 2089. Total energy = 443.6294 kcal/mol (443.3283 without restraints) Performing minimization step: 2090. Total energy = 443.5836 kcal/mol (443.2826 without restraints) Performing minimization step: 2091. Total energy = 443.5378 kcal/mol (443.2368 without restraints) Performing minimization step: 2092. Total energy = 443.4921 kcal/mol (443.1913 without restraints) Performing minimization step: 2093. Total energy = 443.4463 kcal/mol (443.1456 without restraints) Performing minimization step: 2094. Total energy = 443.4005 kcal/mol (443.0999 without restraints) Performing minimization step: 2095. Total energy = 443.3548 kcal/mol (443.0542 without restraints) Performing minimization step: 2096. Total energy = 443.3092 kcal/mol (443.0088 without restraints) Performing minimization step: 2097. Total energy = 443.2635 kcal/mol (442.9632 without restraints) Performing minimization step: 2098. Total energy = 443.2179 kcal/mol (442.9176 without restraints) Performing minimization step: 2099. Total energy = 443.1722 kcal/mol (442.8721 without restraints) Performing minimization step: 2100. Total energy = 443.1266 kcal/mol (442.8265 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 443.0813 kcal/mol (442.7814 without restraints) Performing minimization step: 2102. Total energy = 443.0358 kcal/mol (442.7359 without restraints) Performing minimization step: 2103. Total energy = 442.9902 kcal/mol (442.6904 without restraints) Performing minimization step: 2104. Total energy = 442.9446 kcal/mol (442.6449 without restraints) Performing minimization step: 2105. Total energy = 442.8991 kcal/mol (442.5994 without restraints) Performing minimization step: 2106. Total energy = 442.8535 kcal/mol (442.5540 without restraints) Performing minimization step: 2107. Total energy = 442.8081 kcal/mol (442.5086 without restraints) Performing minimization step: 2108. Total energy = 442.7626 kcal/mol (442.4632 without restraints) Performing minimization step: 2109. Total energy = 442.7173 kcal/mol (442.4181 without restraints) Performing minimization step: 2110. Total energy = 442.6719 kcal/mol (442.3727 without restraints) Performing minimization step: 2111. Total energy = 442.6265 kcal/mol (442.3275 without restraints) Performing minimization step: 2112. Total energy = 442.5811 kcal/mol (442.2822 without restraints) Performing minimization step: 2113. Total energy = 442.5358 kcal/mol (442.2369 without restraints) Performing minimization step: 2114. Total energy = 442.4906 kcal/mol (442.1920 without restraints) Performing minimization step: 2115. Total energy = 442.4457 kcal/mol (442.1470 without restraints) Performing minimization step: 2116. Total energy = 442.4004 kcal/mol (442.1018 without restraints) Performing minimization step: 2117. Total energy = 442.3548 kcal/mol (442.0563 without restraints) Performing minimization step: 2118. Total energy = 442.3097 kcal/mol (442.0113 without restraints) Performing minimization step: 2119. Total energy = 442.2645 kcal/mol (441.9662 without restraints) Performing minimization step: 2120. Total energy = 442.2193 kcal/mol (441.9210 without restraints) Performing minimization step: 2121. Total energy = 442.1740 kcal/mol (441.8757 without restraints) Performing minimization step: 2122. Total energy = 442.1287 kcal/mol (441.8306 without restraints) Performing minimization step: 2123. Total energy = 442.0835 kcal/mol (441.7856 without restraints) Performing minimization step: 2124. Total energy = 442.0384 kcal/mol (441.7405 without restraints) Performing minimization step: 2125. Total energy = 441.9932 kcal/mol (441.6955 without restraints) Performing minimization step: 2126. Total energy = 441.9481 kcal/mol (441.6504 without restraints) Performing minimization step: 2127. Total energy = 441.9032 kcal/mol (441.6057 without restraints) Performing minimization step: 2128. Total energy = 441.8584 kcal/mol (441.5609 without restraints) Performing minimization step: 2129. Total energy = 441.8133 kcal/mol (441.5159 without restraints) Performing minimization step: 2130. Total energy = 441.7683 kcal/mol (441.4710 without restraints) Performing minimization step: 2131. Total energy = 441.7233 kcal/mol (441.4261 without restraints) Performing minimization step: 2132. Total energy = 441.6785 kcal/mol (441.3814 without restraints) Performing minimization step: 2133. Total energy = 441.6338 kcal/mol (441.3367 without restraints) Performing minimization step: 2134. Total energy = 441.5888 kcal/mol (441.2919 without restraints) Performing minimization step: 2135. Total energy = 441.5439 kcal/mol (441.2470 without restraints) Performing minimization step: 2136. Total energy = 441.4991 kcal/mol (441.2023 without restraints) Performing minimization step: 2137. Total energy = 441.4542 kcal/mol (441.1575 without restraints) Performing minimization step: 2138. Total energy = 441.4094 kcal/mol (441.1128 without restraints) Performing minimization step: 2139. Total energy = 441.3645 kcal/mol (441.0680 without restraints) Performing minimization step: 2140. Total energy = 441.3197 kcal/mol (441.0233 without restraints) Performing minimization step: 2141. Total energy = 441.2749 kcal/mol (440.9786 without restraints) Performing minimization step: 2142. Total energy = 441.2301 kcal/mol (440.9339 without restraints) Performing minimization step: 2143. Total energy = 441.1853 kcal/mol (440.8892 without restraints) Performing minimization step: 2144. Total energy = 441.1406 kcal/mol (440.8445 without restraints) Performing minimization step: 2145. Total energy = 441.0959 kcal/mol (440.8001 without restraints) Performing minimization step: 2146. Total energy = 441.0514 kcal/mol (440.7555 without restraints) Performing minimization step: 2147. Total energy = 441.0065 kcal/mol (440.7106 without restraints) Performing minimization step: 2148. Total energy = 440.9620 kcal/mol (440.6663 without restraints) Performing minimization step: 2149. Total energy = 440.9177 kcal/mol (440.6221 without restraints) Performing minimization step: 2150. Total energy = 440.8728 kcal/mol (440.5773 without restraints) Performing minimization step: 2151. Total energy = 440.8284 kcal/mol (440.5330 without restraints) Performing minimization step: 2152. Total energy = 440.7834 kcal/mol (440.4881 without restraints) Performing minimization step: 2153. Total energy = 440.7389 kcal/mol (440.4436 without restraints) Performing minimization step: 2154. Total energy = 440.6943 kcal/mol (440.3991 without restraints) Performing minimization step: 2155. Total energy = 440.6498 kcal/mol (440.3547 without restraints) Performing minimization step: 2156. Total energy = 440.6053 kcal/mol (440.3103 without restraints) Performing minimization step: 2157. Total energy = 440.5608 kcal/mol (440.2658 without restraints) Performing minimization step: 2158. Total energy = 440.5163 kcal/mol (440.2215 without restraints) Performing minimization step: 2159. Total energy = 440.4718 kcal/mol (440.1771 without restraints) Performing minimization step: 2160. Total energy = 440.4273 kcal/mol (440.1327 without restraints) Performing minimization step: 2161. Total energy = 440.3830 kcal/mol (440.0885 without restraints) Performing minimization step: 2162. Total energy = 440.3387 kcal/mol (440.0442 without restraints) Performing minimization step: 2163. Total energy = 440.2947 kcal/mol (440.0005 without restraints) Performing minimization step: 2164. Total energy = 440.2506 kcal/mol (439.9563 without restraints) Performing minimization step: 2165. Total energy = 440.2065 kcal/mol (439.9122 without restraints) Performing minimization step: 2166. Total energy = 440.1624 kcal/mol (439.8682 without restraints) Performing minimization step: 2167. Total energy = 440.1178 kcal/mol (439.8237 without restraints) Performing minimization step: 2168. Total energy = 440.0735 kcal/mol (439.7795 without restraints) Performing minimization step: 2169. Total energy = 440.0292 kcal/mol (439.7353 without restraints) Performing minimization step: 2170. Total energy = 439.9850 kcal/mol (439.6912 without restraints) Performing minimization step: 2171. Total energy = 439.9408 kcal/mol (439.6470 without restraints) Performing minimization step: 2172. Total energy = 439.8965 kcal/mol (439.6029 without restraints) Performing minimization step: 2173. Total energy = 439.8521 kcal/mol (439.5586 without restraints) Performing minimization step: 2174. Total energy = 439.8080 kcal/mol (439.5145 without restraints) Performing minimization step: 2175. Total energy = 439.7639 kcal/mol (439.4705 without restraints) Performing minimization step: 2176. Total energy = 439.7197 kcal/mol (439.4264 without restraints) Performing minimization step: 2177. Total energy = 439.6756 kcal/mol (439.3823 without restraints) Performing minimization step: 2178. Total energy = 439.6315 kcal/mol (439.3383 without restraints) Performing minimization step: 2179. Total energy = 439.5874 kcal/mol (439.2943 without restraints) Performing minimization step: 2180. Total energy = 439.5433 kcal/mol (439.2504 without restraints) Performing minimization step: 2181. Total energy = 439.4993 kcal/mol (439.2064 without restraints) Performing minimization step: 2182. Total energy = 439.4553 kcal/mol (439.1625 without restraints) Performing minimization step: 2183. Total energy = 439.4113 kcal/mol (439.1185 without restraints) Performing minimization step: 2184. Total energy = 439.3673 kcal/mol (439.0746 without restraints) Performing minimization step: 2185. Total energy = 439.3237 kcal/mol (439.0312 without restraints) Performing minimization step: 2186. Total energy = 439.2798 kcal/mol (438.9873 without restraints) Performing minimization step: 2187. Total energy = 439.2360 kcal/mol (438.9437 without restraints) Performing minimization step: 2188. Total energy = 439.1922 kcal/mol (438.8999 without restraints) Performing minimization step: 2189. Total energy = 439.1482 kcal/mol (438.8560 without restraints) Performing minimization step: 2190. Total energy = 439.1044 kcal/mol (438.8122 without restraints) Performing minimization step: 2191. Total energy = 439.0605 kcal/mol (438.7685 without restraints) Performing minimization step: 2192. Total energy = 439.0167 kcal/mol (438.7247 without restraints) Performing minimization step: 2193. Total energy = 438.9730 kcal/mol (438.6812 without restraints) Performing minimization step: 2194. Total energy = 438.9293 kcal/mol (438.6375 without restraints) Performing minimization step: 2195. Total energy = 438.8856 kcal/mol (438.5939 without restraints) Performing minimization step: 2196. Total energy = 438.8418 kcal/mol (438.5502 without restraints) Performing minimization step: 2197. Total energy = 438.7981 kcal/mol (438.5065 without restraints) Performing minimization step: 2198. Total energy = 438.7544 kcal/mol (438.4629 without restraints) Performing minimization step: 2199. Total energy = 438.7105 kcal/mol (438.4191 without restraints) Performing minimization step: 2200. Total energy = 438.6668 kcal/mol (438.3755 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 438.6232 kcal/mol (438.3319 without restraints) Performing minimization step: 2202. Total energy = 438.5795 kcal/mol (438.2884 without restraints) Performing minimization step: 2203. Total energy = 438.5359 kcal/mol (438.2448 without restraints) Performing minimization step: 2204. Total energy = 438.4926 kcal/mol (438.2018 without restraints) Performing minimization step: 2205. Total energy = 438.4493 kcal/mol (438.1585 without restraints) Performing minimization step: 2206. Total energy = 438.4058 kcal/mol (438.1150 without restraints) Performing minimization step: 2207. Total energy = 438.3623 kcal/mol (438.0715 without restraints) Performing minimization step: 2208. Total energy = 438.3187 kcal/mol (438.0281 without restraints) Performing minimization step: 2209. Total energy = 438.2752 kcal/mol (437.9846 without restraints) Performing minimization step: 2210. Total energy = 438.2320 kcal/mol (437.9415 without restraints) Performing minimization step: 2211. Total energy = 438.1887 kcal/mol (437.8983 without restraints) Performing minimization step: 2212. Total energy = 438.1455 kcal/mol (437.8551 without restraints) Performing minimization step: 2213. Total energy = 438.1021 kcal/mol (437.8118 without restraints) Performing minimization step: 2214. Total energy = 438.0586 kcal/mol (437.7685 without restraints) Performing minimization step: 2215. Total energy = 438.0152 kcal/mol (437.7251 without restraints) Performing minimization step: 2216. Total energy = 437.9719 kcal/mol (437.6819 without restraints) Performing minimization step: 2217. Total energy = 437.9285 kcal/mol (437.6386 without restraints) Performing minimization step: 2218. Total energy = 437.8852 kcal/mol (437.5953 without restraints) Performing minimization step: 2219. Total energy = 437.8419 kcal/mol (437.5521 without restraints) Performing minimization step: 2220. Total energy = 437.7986 kcal/mol (437.5088 without restraints) Performing minimization step: 2221. Total energy = 437.7550 kcal/mol (437.4654 without restraints) Performing minimization step: 2222. Total energy = 437.7118 kcal/mol (437.4222 without restraints) Performing minimization step: 2223. Total energy = 437.6685 kcal/mol (437.3791 without restraints) Performing minimization step: 2224. Total energy = 437.6253 kcal/mol (437.3360 without restraints) Performing minimization step: 2225. Total energy = 437.5822 kcal/mol (437.2929 without restraints) Performing minimization step: 2226. Total energy = 437.5390 kcal/mol (437.2498 without restraints) Performing minimization step: 2227. Total energy = 437.4958 kcal/mol (437.2067 without restraints) Performing minimization step: 2228. Total energy = 437.4527 kcal/mol (437.1636 without restraints) Performing minimization step: 2229. Total energy = 437.4095 kcal/mol (437.1205 without restraints) Performing minimization step: 2230. Total energy = 437.3665 kcal/mol (437.0775 without restraints) Performing minimization step: 2231. Total energy = 437.3234 kcal/mol (437.0346 without restraints) Performing minimization step: 2232. Total energy = 437.2803 kcal/mol (436.9916 without restraints) Performing minimization step: 2233. Total energy = 437.2373 kcal/mol (436.9486 without restraints) Performing minimization step: 2234. Total energy = 437.1943 kcal/mol (436.9057 without restraints) Performing minimization step: 2235. Total energy = 437.1512 kcal/mol (436.8627 without restraints) Performing minimization step: 2236. Total energy = 437.1082 kcal/mol (436.8197 without restraints) Performing minimization step: 2237. Total energy = 437.0653 kcal/mol (436.7769 without restraints) Performing minimization step: 2238. Total energy = 437.0222 kcal/mol (436.7340 without restraints) Performing minimization step: 2239. Total energy = 436.9793 kcal/mol (436.6911 without restraints) Performing minimization step: 2240. Total energy = 436.9362 kcal/mol (436.6481 without restraints) Performing minimization step: 2241. Total energy = 436.8933 kcal/mol (436.6052 without restraints) Performing minimization step: 2242. Total energy = 436.8504 kcal/mol (436.5624 without restraints) Performing minimization step: 2243. Total energy = 436.8077 kcal/mol (436.5198 without restraints) Performing minimization step: 2244. Total energy = 436.7645 kcal/mol (436.4766 without restraints) Performing minimization step: 2245. Total energy = 436.7216 kcal/mol (436.4338 without restraints) Performing minimization step: 2246. Total energy = 436.6789 kcal/mol (436.3912 without restraints) Performing minimization step: 2247. Total energy = 436.6361 kcal/mol (436.3485 without restraints) Performing minimization step: 2248. Total energy = 436.5934 kcal/mol (436.3059 without restraints) Performing minimization step: 2249. Total energy = 436.5509 kcal/mol (436.2634 without restraints) Performing minimization step: 2250. Total energy = 436.5081 kcal/mol (436.2207 without restraints) Performing minimization step: 2251. Total energy = 436.4654 kcal/mol (436.1781 without restraints) Performing minimization step: 2252. Total energy = 436.4231 kcal/mol (436.1359 without restraints) Performing minimization step: 2253. Total energy = 436.3805 kcal/mol (436.0933 without restraints) Performing minimization step: 2254. Total energy = 436.3378 kcal/mol (436.0507 without restraints) Performing minimization step: 2255. Total energy = 436.2951 kcal/mol (436.0081 without restraints) Performing minimization step: 2256. Total energy = 436.2523 kcal/mol (435.9653 without restraints) Performing minimization step: 2257. Total energy = 436.2096 kcal/mol (435.9228 without restraints) Performing minimization step: 2258. Total energy = 436.1671 kcal/mol (435.8804 without restraints) Performing minimization step: 2259. Total energy = 436.1244 kcal/mol (435.8377 without restraints) Performing minimization step: 2260. Total energy = 436.0819 kcal/mol (435.7952 without restraints) Performing minimization step: 2261. Total energy = 436.0393 kcal/mol (435.7528 without restraints) Performing minimization step: 2262. Total energy = 435.9968 kcal/mol (435.7103 without restraints) Performing minimization step: 2263. Total energy = 435.9543 kcal/mol (435.6679 without restraints) Performing minimization step: 2264. Total energy = 435.9117 kcal/mol (435.6254 without restraints) Performing minimization step: 2265. Total energy = 435.8697 kcal/mol (435.5834 without restraints) Performing minimization step: 2266. Total energy = 435.8277 kcal/mol (435.5415 without restraints) Performing minimization step: 2267. Total energy = 435.7852 kcal/mol (435.4991 without restraints) Performing minimization step: 2268. Total energy = 435.7430 kcal/mol (435.4570 without restraints) Performing minimization step: 2269. Total energy = 435.7006 kcal/mol (435.4147 without restraints) Performing minimization step: 2270. Total energy = 435.6580 kcal/mol (435.3720 without restraints) Performing minimization step: 2271. Total energy = 435.6155 kcal/mol (435.3297 without restraints) Performing minimization step: 2272. Total energy = 435.5731 kcal/mol (435.2874 without restraints) Performing minimization step: 2273. Total energy = 435.5312 kcal/mol (435.2456 without restraints) Performing minimization step: 2274. Total energy = 435.4889 kcal/mol (435.2033 without restraints) Performing minimization step: 2275. Total energy = 435.4467 kcal/mol (435.1611 without restraints) Performing minimization step: 2276. Total energy = 435.4045 kcal/mol (435.1191 without restraints) Performing minimization step: 2277. Total energy = 435.3621 kcal/mol (435.0767 without restraints) Performing minimization step: 2278. Total energy = 435.3198 kcal/mol (435.0345 without restraints) Performing minimization step: 2279. Total energy = 435.2777 kcal/mol (434.9925 without restraints) Performing minimization step: 2280. Total energy = 435.2353 kcal/mol (434.9502 without restraints) Performing minimization step: 2281. Total energy = 435.1931 kcal/mol (434.9080 without restraints) Performing minimization step: 2282. Total energy = 435.1510 kcal/mol (434.8660 without restraints) Performing minimization step: 2283. Total energy = 435.1088 kcal/mol (434.8239 without restraints) Performing minimization step: 2284. Total energy = 435.0666 kcal/mol (434.7819 without restraints) Performing minimization step: 2285. Total energy = 435.0250 kcal/mol (434.7405 without restraints) Performing minimization step: 2286. Total energy = 434.9833 kcal/mol (434.6986 without restraints) Performing minimization step: 2287. Total energy = 434.9412 kcal/mol (434.6566 without restraints) Performing minimization step: 2288. Total energy = 434.8992 kcal/mol (434.6146 without restraints) Performing minimization step: 2289. Total energy = 434.8571 kcal/mol (434.5726 without restraints) Performing minimization step: 2290. Total energy = 434.8151 kcal/mol (434.5307 without restraints) Performing minimization step: 2291. Total energy = 434.7731 kcal/mol (434.4888 without restraints) Performing minimization step: 2292. Total energy = 434.7311 kcal/mol (434.4468 without restraints) Performing minimization step: 2293. Total energy = 434.6894 kcal/mol (434.4052 without restraints) Performing minimization step: 2294. Total energy = 434.6475 kcal/mol (434.3633 without restraints) Performing minimization step: 2295. Total energy = 434.6058 kcal/mol (434.3219 without restraints) Performing minimization step: 2296. Total energy = 434.5647 kcal/mol (434.2807 without restraints) Performing minimization step: 2297. Total energy = 434.5229 kcal/mol (434.2390 without restraints) Performing minimization step: 2298. Total energy = 434.4811 kcal/mol (434.1972 without restraints) Performing minimization step: 2299. Total energy = 434.4393 kcal/mol (434.1555 without restraints) Performing minimization step: 2300. Total energy = 434.3974 kcal/mol (434.1137 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 434.3556 kcal/mol (434.0719 without restraints) Performing minimization step: 2302. Total energy = 434.3138 kcal/mol (434.0302 without restraints) Performing minimization step: 2303. Total energy = 434.2719 kcal/mol (433.9882 without restraints) Performing minimization step: 2304. Total energy = 434.2302 kcal/mol (433.9467 without restraints) Performing minimization step: 2305. Total energy = 434.1884 kcal/mol (433.9050 without restraints) Performing minimization step: 2306. Total energy = 434.1467 kcal/mol (433.8634 without restraints) Performing minimization step: 2307. Total energy = 434.1049 kcal/mol (433.8217 without restraints) Performing minimization step: 2308. Total energy = 434.0632 kcal/mol (433.7801 without restraints) Performing minimization step: 2309. Total energy = 434.0216 kcal/mol (433.7385 without restraints) Performing minimization step: 2310. Total energy = 433.9801 kcal/mol (433.6971 without restraints) Performing minimization step: 2311. Total energy = 433.9384 kcal/mol (433.6555 without restraints) Performing minimization step: 2312. Total energy = 433.8968 kcal/mol (433.6139 without restraints) Performing minimization step: 2313. Total energy = 433.8552 kcal/mol (433.5724 without restraints) Performing minimization step: 2314. Total energy = 433.8136 kcal/mol (433.5308 without restraints) Performing minimization step: 2315. Total energy = 433.7720 kcal/mol (433.4893 without restraints) Performing minimization step: 2316. Total energy = 433.7305 kcal/mol (433.4479 without restraints) Performing minimization step: 2317. Total energy = 433.6893 kcal/mol (433.4068 without restraints) Performing minimization step: 2318. Total energy = 433.6478 kcal/mol (433.3653 without restraints) Performing minimization step: 2319. Total energy = 433.6063 kcal/mol (433.3239 without restraints) Performing minimization step: 2320. Total energy = 433.5648 kcal/mol (433.2824 without restraints) Performing minimization step: 2321. Total energy = 433.5233 kcal/mol (433.2410 without restraints) Performing minimization step: 2322. Total energy = 433.4820 kcal/mol (433.1998 without restraints) Performing minimization step: 2323. Total energy = 433.4402 kcal/mol (433.1581 without restraints) Performing minimization step: 2324. Total energy = 433.3989 kcal/mol (433.1170 without restraints) Performing minimization step: 2325. Total energy = 433.3577 kcal/mol (433.0757 without restraints) Performing minimization step: 2326. Total energy = 433.3163 kcal/mol (433.0344 without restraints) Performing minimization step: 2327. Total energy = 433.2749 kcal/mol (432.9931 without restraints) Performing minimization step: 2328. Total energy = 433.2336 kcal/mol (432.9518 without restraints) Performing minimization step: 2329. Total energy = 433.1922 kcal/mol (432.9105 without restraints) Performing minimization step: 2330. Total energy = 433.1510 kcal/mol (432.8694 without restraints) Performing minimization step: 2331. Total energy = 433.1097 kcal/mol (432.8281 without restraints) Performing minimization step: 2332. Total energy = 433.0687 kcal/mol (432.7871 without restraints) Performing minimization step: 2333. Total energy = 433.0273 kcal/mol (432.7459 without restraints) Performing minimization step: 2334. Total energy = 432.9862 kcal/mol (432.7049 without restraints) Performing minimization step: 2335. Total energy = 432.9448 kcal/mol (432.6635 without restraints) Performing minimization step: 2336. Total energy = 432.9036 kcal/mol (432.6224 without restraints) Performing minimization step: 2337. Total energy = 432.8629 kcal/mol (432.5817 without restraints) Performing minimization step: 2338. Total energy = 432.8215 kcal/mol (432.5404 without restraints) Performing minimization step: 2339. Total energy = 432.7802 kcal/mol (432.4991 without restraints) Performing minimization step: 2340. Total energy = 432.7390 kcal/mol (432.4580 without restraints) Performing minimization step: 2341. Total energy = 432.6981 kcal/mol (432.4172 without restraints) Performing minimization step: 2342. Total energy = 432.6571 kcal/mol (432.3762 without restraints) Performing minimization step: 2343. Total energy = 432.6160 kcal/mol (432.3352 without restraints) Performing minimization step: 2344. Total energy = 432.5749 kcal/mol (432.2942 without restraints) Performing minimization step: 2345. Total energy = 432.5338 kcal/mol (432.2532 without restraints) Performing minimization step: 2346. Total energy = 432.4930 kcal/mol (432.2124 without restraints) Performing minimization step: 2347. Total energy = 432.4521 kcal/mol (432.1716 without restraints) Performing minimization step: 2348. Total energy = 432.4109 kcal/mol (432.1304 without restraints) Performing minimization step: 2349. Total energy = 432.3701 kcal/mol (432.0898 without restraints) Performing minimization step: 2350. Total energy = 432.3292 kcal/mol (432.0489 without restraints) Performing minimization step: 2351. Total energy = 432.2880 kcal/mol (432.0078 without restraints) Performing minimization step: 2352. Total energy = 432.2471 kcal/mol (431.9669 without restraints) Performing minimization step: 2353. Total energy = 432.2062 kcal/mol (431.9261 without restraints) Performing minimization step: 2354. Total energy = 432.1653 kcal/mol (431.8852 without restraints) Performing minimization step: 2355. Total energy = 432.1244 kcal/mol (431.8444 without restraints) Performing minimization step: 2356. Total energy = 432.0836 kcal/mol (431.8036 without restraints) Performing minimization step: 2357. Total energy = 432.0428 kcal/mol (431.7629 without restraints) Performing minimization step: 2358. Total energy = 432.0019 kcal/mol (431.7221 without restraints) Performing minimization step: 2359. Total energy = 431.9611 kcal/mol (431.6814 without restraints) Performing minimization step: 2360. Total energy = 431.9203 kcal/mol (431.6407 without restraints) Performing minimization step: 2361. Total energy = 431.8796 kcal/mol (431.6000 without restraints) Performing minimization step: 2362. Total energy = 431.8390 kcal/mol (431.5597 without restraints) Performing minimization step: 2363. Total energy = 431.7986 kcal/mol (431.5191 without restraints) Performing minimization step: 2364. Total energy = 431.7578 kcal/mol (431.4784 without restraints) Performing minimization step: 2365. Total energy = 431.7171 kcal/mol (431.4378 without restraints) Performing minimization step: 2366. Total energy = 431.6764 kcal/mol (431.3972 without restraints) Performing minimization step: 2367. Total energy = 431.6358 kcal/mol (431.3566 without restraints) Performing minimization step: 2368. Total energy = 431.5951 kcal/mol (431.3160 without restraints) Performing minimization step: 2369. Total energy = 431.5545 kcal/mol (431.2754 without restraints) Performing minimization step: 2370. Total energy = 431.5139 kcal/mol (431.2349 without restraints) Performing minimization step: 2371. Total energy = 431.4733 kcal/mol (431.1943 without restraints) Performing minimization step: 2372. Total energy = 431.4327 kcal/mol (431.1538 without restraints) Performing minimization step: 2373. Total energy = 431.3923 kcal/mol (431.1135 without restraints) Performing minimization step: 2374. Total energy = 431.3518 kcal/mol (431.0731 without restraints) Performing minimization step: 2375. Total energy = 431.3113 kcal/mol (431.0326 without restraints) Performing minimization step: 2376. Total energy = 431.2707 kcal/mol (430.9921 without restraints) Performing minimization step: 2377. Total energy = 431.2302 kcal/mol (430.9517 without restraints) Performing minimization step: 2378. Total energy = 431.1897 kcal/mol (430.9110 without restraints) Performing minimization step: 2379. Total energy = 431.1489 kcal/mol (430.8705 without restraints) Performing minimization step: 2380. Total energy = 431.1085 kcal/mol (430.8301 without restraints) Performing minimization step: 2381. Total energy = 431.0681 kcal/mol (430.7898 without restraints) Performing minimization step: 2382. Total energy = 431.0280 kcal/mol (430.7498 without restraints) Performing minimization step: 2383. Total energy = 430.9877 kcal/mol (430.7094 without restraints) Performing minimization step: 2384. Total energy = 430.9472 kcal/mol (430.6691 without restraints) Performing minimization step: 2385. Total energy = 430.9069 kcal/mol (430.6288 without restraints) Performing minimization step: 2386. Total energy = 430.8667 kcal/mol (430.5887 without restraints) Performing minimization step: 2387. Total energy = 430.8264 kcal/mol (430.5485 without restraints) Performing minimization step: 2388. Total energy = 430.7858 kcal/mol (430.5079 without restraints) Performing minimization step: 2389. Total energy = 430.7455 kcal/mol (430.4677 without restraints) Performing minimization step: 2390. Total energy = 430.7053 kcal/mol (430.4275 without restraints) Performing minimization step: 2391. Total energy = 430.6648 kcal/mol (430.3871 without restraints) Performing minimization step: 2392. Total energy = 430.6245 kcal/mol (430.3469 without restraints) Performing minimization step: 2393. Total energy = 430.5843 kcal/mol (430.3067 without restraints) Performing minimization step: 2394. Total energy = 430.5441 kcal/mol (430.2665 without restraints) Performing minimization step: 2395. Total energy = 430.5039 kcal/mol (430.2264 without restraints) Performing minimization step: 2396. Total energy = 430.4641 kcal/mol (430.1867 without restraints) Performing minimization step: 2397. Total energy = 430.4239 kcal/mol (430.1466 without restraints) Performing minimization step: 2398. Total energy = 430.3838 kcal/mol (430.1066 without restraints) Performing minimization step: 2399. Total energy = 430.3435 kcal/mol (430.0661 without restraints) Performing minimization step: 2400. Total energy = 430.3037 kcal/mol (430.0267 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 430.2638 kcal/mol (429.9868 without restraints) Performing minimization step: 2402. Total energy = 430.2236 kcal/mol (429.9466 without restraints) Performing minimization step: 2403. Total energy = 430.1836 kcal/mol (429.9066 without restraints) Performing minimization step: 2404. Total energy = 430.1443 kcal/mol (429.8674 without restraints) Performing minimization step: 2405. Total energy = 430.1043 kcal/mol (429.8275 without restraints) Performing minimization step: 2406. Total energy = 430.0643 kcal/mol (429.7875 without restraints) Performing minimization step: 2407. Total energy = 430.0243 kcal/mol (429.7476 without restraints) Performing minimization step: 2408. Total energy = 429.9843 kcal/mol (429.7077 without restraints) Performing minimization step: 2409. Total energy = 429.9444 kcal/mol (429.6678 without restraints) Performing minimization step: 2410. Total energy = 429.9045 kcal/mol (429.6279 without restraints) Performing minimization step: 2411. Total energy = 429.8645 kcal/mol (429.5880 without restraints) Performing minimization step: 2412. Total energy = 429.8245 kcal/mol (429.5481 without restraints) Performing minimization step: 2413. Total energy = 429.7849 kcal/mol (429.5085 without restraints) Performing minimization step: 2414. Total energy = 429.7449 kcal/mol (429.4686 without restraints) Performing minimization step: 2415. Total energy = 429.7051 kcal/mol (429.4289 without restraints) Performing minimization step: 2416. Total energy = 429.6653 kcal/mol (429.3891 without restraints) Performing minimization step: 2417. Total energy = 429.6254 kcal/mol (429.3493 without restraints) Performing minimization step: 2418. Total energy = 429.5856 kcal/mol (429.3095 without restraints) Performing minimization step: 2419. Total energy = 429.5460 kcal/mol (429.2700 without restraints) Performing minimization step: 2420. Total energy = 429.5062 kcal/mol (429.2303 without restraints) Performing minimization step: 2421. Total energy = 429.4665 kcal/mol (429.1906 without restraints) Performing minimization step: 2422. Total energy = 429.4269 kcal/mol (429.1512 without restraints) Performing minimization step: 2423. Total energy = 429.3877 kcal/mol (429.1120 without restraints) Performing minimization step: 2424. Total energy = 429.3481 kcal/mol (429.0724 without restraints) Performing minimization step: 2425. Total energy = 429.3084 kcal/mol (429.0328 without restraints) Performing minimization step: 2426. Total energy = 429.2690 kcal/mol (428.9934 without restraints) Performing minimization step: 2427. Total energy = 429.2293 kcal/mol (428.9538 without restraints) Performing minimization step: 2428. Total energy = 429.1904 kcal/mol (428.9149 without restraints) Performing minimization step: 2429. Total energy = 429.1508 kcal/mol (428.8754 without restraints) Performing minimization step: 2430. Total energy = 429.1116 kcal/mol (428.8364 without restraints) Performing minimization step: 2431. Total energy = 429.0722 kcal/mol (428.7969 without restraints) Performing minimization step: 2432. Total energy = 429.0324 kcal/mol (428.7572 without restraints) Performing minimization step: 2433. Total energy = 428.9927 kcal/mol (428.7175 without restraints) Performing minimization step: 2434. Total energy = 428.9531 kcal/mol (428.6780 without restraints) Performing minimization step: 2435. Total energy = 428.9137 kcal/mol (428.6386 without restraints) Performing minimization step: 2436. Total energy = 428.8742 kcal/mol (428.5992 without restraints) Performing minimization step: 2437. Total energy = 428.8347 kcal/mol (428.5599 without restraints) Performing minimization step: 2438. Total energy = 428.7953 kcal/mol (428.5203 without restraints) Performing minimization step: 2439. Total energy = 428.7557 kcal/mol (428.4809 without restraints) Performing minimization step: 2440. Total energy = 428.7163 kcal/mol (428.4415 without restraints) Performing minimization step: 2441. Total energy = 428.6768 kcal/mol (428.4021 without restraints) Performing minimization step: 2442. Total energy = 428.6374 kcal/mol (428.3627 without restraints) Performing minimization step: 2443. Total energy = 428.5980 kcal/mol (428.3234 without restraints) Performing minimization step: 2444. Total energy = 428.5586 kcal/mol (428.2840 without restraints) Performing minimization step: 2445. Total energy = 428.5192 kcal/mol (428.2448 without restraints) Performing minimization step: 2446. Total energy = 428.4799 kcal/mol (428.2055 without restraints) Performing minimization step: 2447. Total energy = 428.4406 kcal/mol (428.1663 without restraints) Performing minimization step: 2448. Total energy = 428.4014 kcal/mol (428.1270 without restraints) Performing minimization step: 2449. Total energy = 428.3621 kcal/mol (428.0878 without restraints) Performing minimization step: 2450. Total energy = 428.3228 kcal/mol (428.0486 without restraints) Performing minimization step: 2451. Total energy = 428.2835 kcal/mol (428.0094 without restraints) Performing minimization step: 2452. Total energy = 428.2443 kcal/mol (427.9702 without restraints) Performing minimization step: 2453. Total energy = 428.2054 kcal/mol (427.9314 without restraints) Performing minimization step: 2454. Total energy = 428.1662 kcal/mol (427.8923 without restraints) Performing minimization step: 2455. Total energy = 428.1270 kcal/mol (427.8531 without restraints) Performing minimization step: 2456. Total energy = 428.0877 kcal/mol (427.8138 without restraints) Performing minimization step: 2457. Total energy = 428.0483 kcal/mol (427.7745 without restraints) Performing minimization step: 2458. Total energy = 428.0091 kcal/mol (427.7354 without restraints) Performing minimization step: 2459. Total energy = 427.9698 kcal/mol (427.6961 without restraints) Performing minimization step: 2460. Total energy = 427.9303 kcal/mol (427.6566 without restraints) Performing minimization step: 2461. Total energy = 427.8914 kcal/mol (427.6179 without restraints) Performing minimization step: 2462. Total energy = 427.8525 kcal/mol (427.5790 without restraints) Performing minimization step: 2463. Total energy = 427.8134 kcal/mol (427.5400 without restraints) Performing minimization step: 2464. Total energy = 427.7744 kcal/mol (427.5010 without restraints) Performing minimization step: 2465. Total energy = 427.7355 kcal/mol (427.4622 without restraints) Performing minimization step: 2466. Total energy = 427.6967 kcal/mol (427.4234 without restraints) Performing minimization step: 2467. Total energy = 427.6577 kcal/mol (427.3845 without restraints) Performing minimization step: 2468. Total energy = 427.6187 kcal/mol (427.3455 without restraints) Performing minimization step: 2469. Total energy = 427.5798 kcal/mol (427.3066 without restraints) Performing minimization step: 2470. Total energy = 427.5408 kcal/mol (427.2677 without restraints) Performing minimization step: 2471. Total energy = 427.5020 kcal/mol (427.2290 without restraints) Performing minimization step: 2472. Total energy = 427.4631 kcal/mol (427.1902 without restraints) Performing minimization step: 2473. Total energy = 427.4242 kcal/mol (427.1513 without restraints) Performing minimization step: 2474. Total energy = 427.3853 kcal/mol (427.1125 without restraints) Performing minimization step: 2475. Total energy = 427.3464 kcal/mol (427.0736 without restraints) Performing minimization step: 2476. Total energy = 427.3076 kcal/mol (427.0348 without restraints) Performing minimization step: 2477. Total energy = 427.2688 kcal/mol (426.9961 without restraints) Performing minimization step: 2478. Total energy = 427.2300 kcal/mol (426.9574 without restraints) Performing minimization step: 2479. Total energy = 427.1915 kcal/mol (426.9189 without restraints) Performing minimization step: 2480. Total energy = 427.1525 kcal/mol (426.8800 without restraints) Performing minimization step: 2481. Total energy = 427.1137 kcal/mol (426.8413 without restraints) Performing minimization step: 2482. Total energy = 427.0750 kcal/mol (426.8026 without restraints) Performing minimization step: 2483. Total energy = 427.0363 kcal/mol (426.7639 without restraints) Performing minimization step: 2484. Total energy = 426.9975 kcal/mol (426.7252 without restraints) Performing minimization step: 2485. Total energy = 426.9588 kcal/mol (426.6865 without restraints) Performing minimization step: 2486. Total energy = 426.9201 kcal/mol (426.6479 without restraints) Performing minimization step: 2487. Total energy = 426.8816 kcal/mol (426.6095 without restraints) Performing minimization step: 2488. Total energy = 426.8430 kcal/mol (426.5709 without restraints) Performing minimization step: 2489. Total energy = 426.8043 kcal/mol (426.5323 without restraints) Performing minimization step: 2490. Total energy = 426.7657 kcal/mol (426.4937 without restraints) Performing minimization step: 2491. Total energy = 426.7271 kcal/mol (426.4552 without restraints) Performing minimization step: 2492. Total energy = 426.6884 kcal/mol (426.4166 without restraints) Performing minimization step: 2493. Total energy = 426.6498 kcal/mol (426.3779 without restraints) Performing minimization step: 2494. Total energy = 426.6111 kcal/mol (426.3393 without restraints) Performing minimization step: 2495. Total energy = 426.5726 kcal/mol (426.3010 without restraints) Performing minimization step: 2496. Total energy = 426.5344 kcal/mol (426.2627 without restraints) Performing minimization step: 2497. Total energy = 426.4959 kcal/mol (426.2243 without restraints) Performing minimization step: 2498. Total energy = 426.4570 kcal/mol (426.1854 without restraints) Performing minimization step: 2499. Total energy = 426.4185 kcal/mol (426.1470 without restraints) Performing minimization step: 2500. Total energy = 426.3799 kcal/mol (426.1084 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 426.3414 kcal/mol (426.0700 without restraints) Performing minimization step: 2502. Total energy = 426.3032 kcal/mol (426.0319 without restraints) Performing minimization step: 2503. Total energy = 426.2650 kcal/mol (425.9937 without restraints) Performing minimization step: 2504. Total energy = 426.2266 kcal/mol (425.9553 without restraints) Performing minimization step: 2505. Total energy = 426.1882 kcal/mol (425.9170 without restraints) Performing minimization step: 2506. Total energy = 426.1498 kcal/mol (425.8787 without restraints) Performing minimization step: 2507. Total energy = 426.1115 kcal/mol (425.8404 without restraints) Performing minimization step: 2508. Total energy = 426.0732 kcal/mol (425.8021 without restraints) Performing minimization step: 2509. Total energy = 426.0349 kcal/mol (425.7639 without restraints) Performing minimization step: 2510. Total energy = 425.9965 kcal/mol (425.7256 without restraints) Performing minimization step: 2511. Total energy = 425.9582 kcal/mol (425.6873 without restraints) Performing minimization step: 2512. Total energy = 425.9199 kcal/mol (425.6491 without restraints) Performing minimization step: 2513. Total energy = 425.8819 kcal/mol (425.6111 without restraints) Performing minimization step: 2514. Total energy = 425.8436 kcal/mol (425.5729 without restraints) Performing minimization step: 2515. Total energy = 425.8054 kcal/mol (425.5348 without restraints) Performing minimization step: 2516. Total energy = 425.7672 kcal/mol (425.4966 without restraints) Performing minimization step: 2517. Total energy = 425.7292 kcal/mol (425.4586 without restraints) Performing minimization step: 2518. Total energy = 425.6910 kcal/mol (425.4205 without restraints) Performing minimization step: 2519. Total energy = 425.6528 kcal/mol (425.3824 without restraints) Performing minimization step: 2520. Total energy = 425.6147 kcal/mol (425.3443 without restraints) Performing minimization step: 2521. Total energy = 425.5766 kcal/mol (425.3063 without restraints) Performing minimization step: 2522. Total energy = 425.5381 kcal/mol (425.2679 without restraints) Performing minimization step: 2523. Total energy = 425.5001 kcal/mol (425.2298 without restraints) Performing minimization step: 2524. Total energy = 425.4620 kcal/mol (425.1918 without restraints) Performing minimization step: 2525. Total energy = 425.4237 kcal/mol (425.1536 without restraints) Performing minimization step: 2526. Total energy = 425.3860 kcal/mol (425.1160 without restraints) Performing minimization step: 2527. Total energy = 425.3480 kcal/mol (425.0780 without restraints) Performing minimization step: 2528. Total energy = 425.3100 kcal/mol (425.0400 without restraints) Performing minimization step: 2529. Total energy = 425.2720 kcal/mol (425.0021 without restraints) Performing minimization step: 2530. Total energy = 425.2337 kcal/mol (424.9636 without restraints) Performing minimization step: 2531. Total energy = 425.1955 kcal/mol (424.9257 without restraints) Performing minimization step: 2532. Total energy = 425.1578 kcal/mol (424.8880 without restraints) Performing minimization step: 2533. Total energy = 425.1199 kcal/mol (424.8501 without restraints) Performing minimization step: 2534. Total energy = 425.0819 kcal/mol (424.8122 without restraints) Performing minimization step: 2535. Total energy = 425.0441 kcal/mol (424.7745 without restraints) Performing minimization step: 2536. Total energy = 425.0062 kcal/mol (424.7366 without restraints) Performing minimization step: 2537. Total energy = 424.9683 kcal/mol (424.6988 without restraints) Performing minimization step: 2538. Total energy = 424.9305 kcal/mol (424.6610 without restraints) Performing minimization step: 2539. Total energy = 424.8930 kcal/mol (424.6236 without restraints) Performing minimization step: 2540. Total energy = 424.8552 kcal/mol (424.5858 without restraints) Performing minimization step: 2541. Total energy = 424.8176 kcal/mol (424.5483 without restraints) Performing minimization step: 2542. Total energy = 424.7798 kcal/mol (424.5105 without restraints) Performing minimization step: 2543. Total energy = 424.7422 kcal/mol (424.4729 without restraints) Performing minimization step: 2544. Total energy = 424.7043 kcal/mol (424.4350 without restraints) Performing minimization step: 2545. Total energy = 424.6665 kcal/mol (424.3973 without restraints) Performing minimization step: 2546. Total energy = 424.6289 kcal/mol (424.3598 without restraints) Performing minimization step: 2547. Total energy = 424.5911 kcal/mol (424.3221 without restraints) Performing minimization step: 2548. Total energy = 424.5532 kcal/mol (424.2842 without restraints) Performing minimization step: 2549. Total energy = 424.5155 kcal/mol (424.2466 without restraints) Performing minimization step: 2550. Total energy = 424.4779 kcal/mol (424.2090 without restraints) Performing minimization step: 2551. Total energy = 424.4404 kcal/mol (424.1716 without restraints) Performing minimization step: 2552. Total energy = 424.4030 kcal/mol (424.1342 without restraints) Performing minimization step: 2553. Total energy = 424.3653 kcal/mol (424.0966 without restraints) Performing minimization step: 2554. Total energy = 424.3283 kcal/mol (424.0596 without restraints) Performing minimization step: 2555. Total energy = 424.2907 kcal/mol (424.0221 without restraints) Performing minimization step: 2556. Total energy = 424.2531 kcal/mol (423.9845 without restraints) Performing minimization step: 2557. Total energy = 424.2155 kcal/mol (423.9470 without restraints) Performing minimization step: 2558. Total energy = 424.1780 kcal/mol (423.9095 without restraints) Performing minimization step: 2559. Total energy = 424.1406 kcal/mol (423.8722 without restraints) Performing minimization step: 2560. Total energy = 424.1031 kcal/mol (423.8347 without restraints) Performing minimization step: 2561. Total energy = 424.0655 kcal/mol (423.7972 without restraints) Performing minimization step: 2562. Total energy = 424.0280 kcal/mol (423.7598 without restraints) Performing minimization step: 2563. Total energy = 423.9905 kcal/mol (423.7223 without restraints) Performing minimization step: 2564. Total energy = 423.9530 kcal/mol (423.6849 without restraints) Performing minimization step: 2565. Total energy = 423.9156 kcal/mol (423.6474 without restraints) Performing minimization step: 2566. Total energy = 423.8784 kcal/mol (423.6106 without restraints) Performing minimization step: 2567. Total energy = 423.8412 kcal/mol (423.5732 without restraints) Performing minimization step: 2568. Total energy = 423.8040 kcal/mol (423.5360 without restraints) Performing minimization step: 2569. Total energy = 423.7666 kcal/mol (423.4987 without restraints) Performing minimization step: 2570. Total energy = 423.7293 kcal/mol (423.4614 without restraints) Performing minimization step: 2571. Total energy = 423.6918 kcal/mol (423.4238 without restraints) Performing minimization step: 2572. Total energy = 423.6544 kcal/mol (423.3866 without restraints) Performing minimization step: 2573. Total energy = 423.6170 kcal/mol (423.3493 without restraints) Performing minimization step: 2574. Total energy = 423.5798 kcal/mol (423.3120 without restraints) Performing minimization step: 2575. Total energy = 423.5424 kcal/mol (423.2748 without restraints) Performing minimization step: 2576. Total energy = 423.5051 kcal/mol (423.2375 without restraints) Performing minimization step: 2577. Total energy = 423.4677 kcal/mol (423.2001 without restraints) Performing minimization step: 2578. Total energy = 423.4307 kcal/mol (423.1632 without restraints) Performing minimization step: 2579. Total energy = 423.3935 kcal/mol (423.1260 without restraints) Performing minimization step: 2580. Total energy = 423.3562 kcal/mol (423.0888 without restraints) Performing minimization step: 2581. Total energy = 423.3190 kcal/mol (423.0517 without restraints) Performing minimization step: 2582. Total energy = 423.2818 kcal/mol (423.0145 without restraints) Performing minimization step: 2583. Total energy = 423.2447 kcal/mol (422.9774 without restraints) Performing minimization step: 2584. Total energy = 423.2077 kcal/mol (422.9405 without restraints) Performing minimization step: 2585. Total energy = 423.1706 kcal/mol (422.9034 without restraints) Performing minimization step: 2586. Total energy = 423.1332 kcal/mol (422.8661 without restraints) Performing minimization step: 2587. Total energy = 423.0965 kcal/mol (422.8294 without restraints) Performing minimization step: 2588. Total energy = 423.0593 kcal/mol (422.7923 without restraints) Performing minimization step: 2589. Total energy = 423.0222 kcal/mol (422.7552 without restraints) Performing minimization step: 2590. Total energy = 422.9851 kcal/mol (422.7182 without restraints) Performing minimization step: 2591. Total energy = 422.9480 kcal/mol (422.6812 without restraints) Performing minimization step: 2592. Total energy = 422.9114 kcal/mol (422.6447 without restraints) Performing minimization step: 2593. Total energy = 422.8745 kcal/mol (422.6078 without restraints) Performing minimization step: 2594. Total energy = 422.8376 kcal/mol (422.5708 without restraints) Performing minimization step: 2595. Total energy = 422.8008 kcal/mol (422.5341 without restraints) Performing minimization step: 2596. Total energy = 422.7640 kcal/mol (422.4973 without restraints) Performing minimization step: 2597. Total energy = 422.7274 kcal/mol (422.4608 without restraints) Performing minimization step: 2598. Total energy = 422.6904 kcal/mol (422.4238 without restraints) Performing minimization step: 2599. Total energy = 422.6535 kcal/mol (422.3869 without restraints) Performing minimization step: 2600. Total energy = 422.6165 kcal/mol (422.3500 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 422.5795 kcal/mol (422.3131 without restraints) Performing minimization step: 2602. Total energy = 422.5426 kcal/mol (422.2763 without restraints) Performing minimization step: 2603. Total energy = 422.5060 kcal/mol (422.2397 without restraints) Performing minimization step: 2604. Total energy = 422.4691 kcal/mol (422.2028 without restraints) Performing minimization step: 2605. Total energy = 422.4323 kcal/mol (422.1662 without restraints) Performing minimization step: 2606. Total energy = 422.3956 kcal/mol (422.1294 without restraints) Performing minimization step: 2607. Total energy = 422.3587 kcal/mol (422.0926 without restraints) Performing minimization step: 2608. Total energy = 422.3219 kcal/mol (422.0558 without restraints) Performing minimization step: 2609. Total energy = 422.2852 kcal/mol (422.0191 without restraints) Performing minimization step: 2610. Total energy = 422.2484 kcal/mol (421.9824 without restraints) Performing minimization step: 2611. Total energy = 422.2118 kcal/mol (421.9459 without restraints) Performing minimization step: 2612. Total energy = 422.1751 kcal/mol (421.9091 without restraints) Performing minimization step: 2613. Total energy = 422.1383 kcal/mol (421.8724 without restraints) Performing minimization step: 2614. Total energy = 422.1016 kcal/mol (421.8358 without restraints) Performing minimization step: 2615. Total energy = 422.0649 kcal/mol (421.7991 without restraints) Performing minimization step: 2616. Total energy = 422.0279 kcal/mol (421.7622 without restraints) Performing minimization step: 2617. Total energy = 421.9912 kcal/mol (421.7256 without restraints) Performing minimization step: 2618. Total energy = 421.9546 kcal/mol (421.6889 without restraints) Performing minimization step: 2619. Total energy = 421.9179 kcal/mol (421.6523 without restraints) Performing minimization step: 2620. Total energy = 421.8812 kcal/mol (421.6157 without restraints) Performing minimization step: 2621. Total energy = 421.8446 kcal/mol (421.5791 without restraints) Performing minimization step: 2622. Total energy = 421.8079 kcal/mol (421.5425 without restraints) Performing minimization step: 2623. Total energy = 421.7713 kcal/mol (421.5059 without restraints) Performing minimization step: 2624. Total energy = 421.7347 kcal/mol (421.4694 without restraints) Performing minimization step: 2625. Total energy = 421.6981 kcal/mol (421.4328 without restraints) Performing minimization step: 2626. Total energy = 421.6616 kcal/mol (421.3963 without restraints) Performing minimization step: 2627. Total energy = 421.6250 kcal/mol (421.3598 without restraints) Performing minimization step: 2628. Total energy = 421.5884 kcal/mol (421.3233 without restraints) Performing minimization step: 2629. Total energy = 421.5522 kcal/mol (421.2870 without restraints) Performing minimization step: 2630. Total energy = 421.5156 kcal/mol (421.2505 without restraints) Performing minimization step: 2631. Total energy = 421.4792 kcal/mol (421.2142 without restraints) Performing minimization step: 2632. Total energy = 421.4430 kcal/mol (421.1780 without restraints) Performing minimization step: 2633. Total energy = 421.4067 kcal/mol (421.1417 without restraints) Performing minimization step: 2634. Total energy = 421.3703 kcal/mol (421.1053 without restraints) Performing minimization step: 2635. Total energy = 421.3338 kcal/mol (421.0689 without restraints) Performing minimization step: 2636. Total energy = 421.2974 kcal/mol (421.0326 without restraints) Performing minimization step: 2637. Total energy = 421.2613 kcal/mol (420.9965 without restraints) Performing minimization step: 2638. Total energy = 421.2249 kcal/mol (420.9601 without restraints) Performing minimization step: 2639. Total energy = 421.1887 kcal/mol (420.9240 without restraints) Performing minimization step: 2640. Total energy = 421.1523 kcal/mol (420.8877 without restraints) Performing minimization step: 2641. Total energy = 421.1159 kcal/mol (420.8513 without restraints) Performing minimization step: 2642. Total energy = 421.0798 kcal/mol (420.8152 without restraints) Performing minimization step: 2643. Total energy = 421.0432 kcal/mol (420.7787 without restraints) Performing minimization step: 2644. Total energy = 421.0069 kcal/mol (420.7425 without restraints) Performing minimization step: 2645. Total energy = 420.9707 kcal/mol (420.7062 without restraints) Performing minimization step: 2646. Total energy = 420.9344 kcal/mol (420.6700 without restraints) Performing minimization step: 2647. Total energy = 420.8981 kcal/mol (420.6338 without restraints) Performing minimization step: 2648. Total energy = 420.8619 kcal/mol (420.5976 without restraints) Performing minimization step: 2649. Total energy = 420.8262 kcal/mol (420.5620 without restraints) Performing minimization step: 2650. Total energy = 420.7900 kcal/mol (420.5258 without restraints) Performing minimization step: 2651. Total energy = 420.7537 kcal/mol (420.4894 without restraints) Performing minimization step: 2652. Total energy = 420.7176 kcal/mol (420.4535 without restraints) Performing minimization step: 2653. Total energy = 420.6814 kcal/mol (420.4173 without restraints) Performing minimization step: 2654. Total energy = 420.6453 kcal/mol (420.3812 without restraints) Performing minimization step: 2655. Total energy = 420.6093 kcal/mol (420.3453 without restraints) Performing minimization step: 2656. Total energy = 420.5732 kcal/mol (420.3092 without restraints) Performing minimization step: 2657. Total energy = 420.5370 kcal/mol (420.2731 without restraints) Performing minimization step: 2658. Total energy = 420.5008 kcal/mol (420.2368 without restraints) Performing minimization step: 2659. Total energy = 420.4646 kcal/mol (420.2007 without restraints) Performing minimization step: 2660. Total energy = 420.4287 kcal/mol (420.1649 without restraints) Performing minimization step: 2661. Total energy = 420.3926 kcal/mol (420.1289 without restraints) Performing minimization step: 2662. Total energy = 420.3566 kcal/mol (420.0929 without restraints) Performing minimization step: 2663. Total energy = 420.3208 kcal/mol (420.0571 without restraints) Performing minimization step: 2664. Total energy = 420.2847 kcal/mol (420.0211 without restraints) Performing minimization step: 2665. Total energy = 420.2487 kcal/mol (419.9851 without restraints) Performing minimization step: 2666. Total energy = 420.2127 kcal/mol (419.9492 without restraints) Performing minimization step: 2667. Total energy = 420.1767 kcal/mol (419.9132 without restraints) Performing minimization step: 2668. Total energy = 420.1407 kcal/mol (419.8773 without restraints) Performing minimization step: 2669. Total energy = 420.1048 kcal/mol (419.8414 without restraints) Performing minimization step: 2670. Total energy = 420.0688 kcal/mol (419.8055 without restraints) Performing minimization step: 2671. Total energy = 420.0329 kcal/mol (419.7696 without restraints) Performing minimization step: 2672. Total energy = 419.9973 kcal/mol (419.7341 without restraints) Performing minimization step: 2673. Total energy = 419.9614 kcal/mol (419.6982 without restraints) Performing minimization step: 2674. Total energy = 419.9257 kcal/mol (419.6625 without restraints) Performing minimization step: 2675. Total energy = 419.8898 kcal/mol (419.6267 without restraints) Performing minimization step: 2676. Total energy = 419.8539 kcal/mol (419.5908 without restraints) Performing minimization step: 2677. Total energy = 419.8180 kcal/mol (419.5550 without restraints) Performing minimization step: 2678. Total energy = 419.7822 kcal/mol (419.5192 without restraints) Performing minimization step: 2679. Total energy = 419.7464 kcal/mol (419.4834 without restraints) Performing minimization step: 2680. Total energy = 419.7106 kcal/mol (419.4477 without restraints) Performing minimization step: 2681. Total energy = 419.6750 kcal/mol (419.4121 without restraints) Performing minimization step: 2682. Total energy = 419.6392 kcal/mol (419.3763 without restraints) Performing minimization step: 2683. Total energy = 419.6034 kcal/mol (419.3406 without restraints) Performing minimization step: 2684. Total energy = 419.5677 kcal/mol (419.3049 without restraints) Performing minimization step: 2685. Total energy = 419.5321 kcal/mol (419.2694 without restraints) Performing minimization step: 2686. Total energy = 419.4962 kcal/mol (419.2336 without restraints) Performing minimization step: 2687. Total energy = 419.4605 kcal/mol (419.1979 without restraints) Performing minimization step: 2688. Total energy = 419.4248 kcal/mol (419.1623 without restraints) Performing minimization step: 2689. Total energy = 419.3893 kcal/mol (419.1268 without restraints) Performing minimization step: 2690. Total energy = 419.3536 kcal/mol (419.0911 without restraints) Performing minimization step: 2691. Total energy = 419.3180 kcal/mol (419.0555 without restraints) Performing minimization step: 2692. Total energy = 419.2825 kcal/mol (419.0201 without restraints) Performing minimization step: 2693. Total energy = 419.2469 kcal/mol (418.9845 without restraints) Performing minimization step: 2694. Total energy = 419.2113 kcal/mol (418.9489 without restraints) Performing minimization step: 2695. Total energy = 419.1757 kcal/mol (418.9134 without restraints) Performing minimization step: 2696. Total energy = 419.1401 kcal/mol (418.8778 without restraints) Performing minimization step: 2697. Total energy = 419.1045 kcal/mol (418.8423 without restraints) Performing minimization step: 2698. Total energy = 419.0689 kcal/mol (418.8068 without restraints) Performing minimization step: 2699. Total energy = 419.0333 kcal/mol (418.7710 without restraints) Performing minimization step: 2700. Total energy = 418.9976 kcal/mol (418.7355 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 418.9620 kcal/mol (418.7000 without restraints) Performing minimization step: 2702. Total energy = 418.9265 kcal/mol (418.6645 without restraints) Performing minimization step: 2703. Total energy = 418.8910 kcal/mol (418.6291 without restraints) Performing minimization step: 2704. Total energy = 418.8553 kcal/mol (418.5934 without restraints) Performing minimization step: 2705. Total energy = 418.8197 kcal/mol (418.5578 without restraints) Performing minimization step: 2706. Total energy = 418.7840 kcal/mol (418.5222 without restraints) Performing minimization step: 2707. Total energy = 418.7485 kcal/mol (418.4867 without restraints) Performing minimization step: 2708. Total energy = 418.7134 kcal/mol (418.4516 without restraints) Performing minimization step: 2709. Total energy = 418.6782 kcal/mol (418.4165 without restraints) Performing minimization step: 2710. Total energy = 418.6424 kcal/mol (418.3805 without restraints) Performing minimization step: 2711. Total energy = 418.6068 kcal/mol (418.3451 without restraints) Performing minimization step: 2712. Total energy = 418.5715 kcal/mol (418.3099 without restraints) Performing minimization step: 2713. Total energy = 418.5361 kcal/mol (418.2745 without restraints) Performing minimization step: 2714. Total energy = 418.5010 kcal/mol (418.2395 without restraints) Performing minimization step: 2715. Total energy = 418.4658 kcal/mol (418.2045 without restraints) Performing minimization step: 2716. Total energy = 418.4310 kcal/mol (418.1696 without restraints) Performing minimization step: 2717. Total energy = 418.3957 kcal/mol (418.1343 without restraints) Performing minimization step: 2718. Total energy = 418.3604 kcal/mol (418.0991 without restraints) Performing minimization step: 2719. Total energy = 418.3251 kcal/mol (418.0638 without restraints) Performing minimization step: 2720. Total energy = 418.2898 kcal/mol (418.0285 without restraints) Performing minimization step: 2721. Total energy = 418.2547 kcal/mol (417.9937 without restraints) Performing minimization step: 2722. Total energy = 418.2197 kcal/mol (417.9585 without restraints) Performing minimization step: 2723. Total energy = 418.1844 kcal/mol (417.9233 without restraints) Performing minimization step: 2724. Total energy = 418.1492 kcal/mol (417.8881 without restraints) Performing minimization step: 2725. Total energy = 418.1140 kcal/mol (417.8529 without restraints) Performing minimization step: 2726. Total energy = 418.0788 kcal/mol (417.8178 without restraints) Performing minimization step: 2727. Total energy = 418.0440 kcal/mol (417.7830 without restraints) Performing minimization step: 2728. Total energy = 418.0088 kcal/mol (417.7479 without restraints) Performing minimization step: 2729. Total energy = 417.9738 kcal/mol (417.7130 without restraints) Performing minimization step: 2730. Total energy = 417.9387 kcal/mol (417.6778 without restraints) Performing minimization step: 2731. Total energy = 417.9037 kcal/mol (417.6430 without restraints) Performing minimization step: 2732. Total energy = 417.8687 kcal/mol (417.6079 without restraints) Performing minimization step: 2733. Total energy = 417.8334 kcal/mol (417.5726 without restraints) Performing minimization step: 2734. Total energy = 417.7984 kcal/mol (417.5377 without restraints) Performing minimization step: 2735. Total energy = 417.7633 kcal/mol (417.5026 without restraints) Performing minimization step: 2736. Total energy = 417.7282 kcal/mol (417.4676 without restraints) Performing minimization step: 2737. Total energy = 417.6930 kcal/mol (417.4323 without restraints) Performing minimization step: 2738. Total energy = 417.6579 kcal/mol (417.3973 without restraints) Performing minimization step: 2739. Total energy = 417.6227 kcal/mol (417.3621 without restraints) Performing minimization step: 2740. Total energy = 417.5875 kcal/mol (417.3271 without restraints) Performing minimization step: 2741. Total energy = 417.5526 kcal/mol (417.2923 without restraints) Performing minimization step: 2742. Total energy = 417.5177 kcal/mol (417.2573 without restraints) Performing minimization step: 2743. Total energy = 417.4826 kcal/mol (417.2222 without restraints) Performing minimization step: 2744. Total energy = 417.4476 kcal/mol (417.1873 without restraints) Performing minimization step: 2745. Total energy = 417.4126 kcal/mol (417.1524 without restraints) Performing minimization step: 2746. Total energy = 417.3779 kcal/mol (417.1177 without restraints) Performing minimization step: 2747. Total energy = 417.3430 kcal/mol (417.0828 without restraints) Performing minimization step: 2748. Total energy = 417.3081 kcal/mol (417.0481 without restraints) Performing minimization step: 2749. Total energy = 417.2734 kcal/mol (417.0133 without restraints) Performing minimization step: 2750. Total energy = 417.2385 kcal/mol (416.9784 without restraints) Performing minimization step: 2751. Total energy = 417.2036 kcal/mol (416.9436 without restraints) Performing minimization step: 2752. Total energy = 417.1687 kcal/mol (416.9087 without restraints) Performing minimization step: 2753. Total energy = 417.1340 kcal/mol (416.8741 without restraints) Performing minimization step: 2754. Total energy = 417.0994 kcal/mol (416.8394 without restraints) Performing minimization step: 2755. Total energy = 417.0645 kcal/mol (416.8046 without restraints) Performing minimization step: 2756. Total energy = 417.0297 kcal/mol (416.7699 without restraints) Performing minimization step: 2757. Total energy = 416.9949 kcal/mol (416.7351 without restraints) Performing minimization step: 2758. Total energy = 416.9605 kcal/mol (416.7007 without restraints) Performing minimization step: 2759. Total energy = 416.9257 kcal/mol (416.6660 without restraints) Performing minimization step: 2760. Total energy = 416.8911 kcal/mol (416.6314 without restraints) Performing minimization step: 2761. Total energy = 416.8564 kcal/mol (416.5967 without restraints) Performing minimization step: 2762. Total energy = 416.8216 kcal/mol (416.5620 without restraints) Performing minimization step: 2763. Total energy = 416.7868 kcal/mol (416.5273 without restraints) Performing minimization step: 2764. Total energy = 416.7521 kcal/mol (416.4926 without restraints) Performing minimization step: 2765. Total energy = 416.7175 kcal/mol (416.4580 without restraints) Performing minimization step: 2766. Total energy = 416.6828 kcal/mol (416.4233 without restraints) Performing minimization step: 2767. Total energy = 416.6481 kcal/mol (416.3887 without restraints) Performing minimization step: 2768. Total energy = 416.6134 kcal/mol (416.3540 without restraints) Performing minimization step: 2769. Total energy = 416.5789 kcal/mol (416.3196 without restraints) Performing minimization step: 2770. Total energy = 416.5443 kcal/mol (416.2850 without restraints) Performing minimization step: 2771. Total energy = 416.5098 kcal/mol (416.2506 without restraints) Performing minimization step: 2772. Total energy = 416.4753 kcal/mol (416.2161 without restraints) Performing minimization step: 2773. Total energy = 416.4407 kcal/mol (416.1815 without restraints) Performing minimization step: 2774. Total energy = 416.4061 kcal/mol (416.1469 without restraints) Performing minimization step: 2775. Total energy = 416.3715 kcal/mol (416.1124 without restraints) Performing minimization step: 2776. Total energy = 416.3370 kcal/mol (416.0779 without restraints) Performing minimization step: 2777. Total energy = 416.3024 kcal/mol (416.0434 without restraints) Performing minimization step: 2778. Total energy = 416.2679 kcal/mol (416.0090 without restraints) Performing minimization step: 2779. Total energy = 416.2334 kcal/mol (415.9745 without restraints) Performing minimization step: 2780. Total energy = 416.1989 kcal/mol (415.9400 without restraints) Performing minimization step: 2781. Total energy = 416.1649 kcal/mol (415.9060 without restraints) Performing minimization step: 2782. Total energy = 416.1308 kcal/mol (415.8720 without restraints) Performing minimization step: 2783. Total energy = 416.0961 kcal/mol (415.8373 without restraints) Performing minimization step: 2784. Total energy = 416.0615 kcal/mol (415.8029 without restraints) Performing minimization step: 2785. Total energy = 416.0269 kcal/mol (415.7682 without restraints) Performing minimization step: 2786. Total energy = 415.9925 kcal/mol (415.7338 without restraints) Performing minimization step: 2787. Total energy = 415.9583 kcal/mol (415.6997 without restraints) Performing minimization step: 2788. Total energy = 415.9241 kcal/mol (415.6655 without restraints) Performing minimization step: 2789. Total energy = 415.8896 kcal/mol (415.6311 without restraints) Performing minimization step: 2790. Total energy = 415.8552 kcal/mol (415.5967 without restraints) Performing minimization step: 2791. Total energy = 415.8210 kcal/mol (415.5626 without restraints) Performing minimization step: 2792. Total energy = 415.7867 kcal/mol (415.5282 without restraints) Performing minimization step: 2793. Total energy = 415.7523 kcal/mol (415.4939 without restraints) Performing minimization step: 2794. Total energy = 415.7180 kcal/mol (415.4596 without restraints) Performing minimization step: 2795. Total energy = 415.6839 kcal/mol (415.4255 without restraints) Performing minimization step: 2796. Total energy = 415.6495 kcal/mol (415.3912 without restraints) Performing minimization step: 2797. Total energy = 415.6152 kcal/mol (415.3569 without restraints) Performing minimization step: 2798. Total energy = 415.5809 kcal/mol (415.3227 without restraints) Performing minimization step: 2799. Total energy = 415.5466 kcal/mol (415.2884 without restraints) Performing minimization step: 2800. Total energy = 415.5123 kcal/mol (415.2542 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 415.4781 kcal/mol (415.2199 without restraints) Performing minimization step: 2802. Total energy = 415.4438 kcal/mol (415.1857 without restraints) Performing minimization step: 2803. Total energy = 415.4093 kcal/mol (415.1511 without restraints) Performing minimization step: 2804. Total energy = 415.3749 kcal/mol (415.1169 without restraints) Performing minimization step: 2805. Total energy = 415.3405 kcal/mol (415.0825 without restraints) Performing minimization step: 2806. Total energy = 415.3064 kcal/mol (415.0485 without restraints) Performing minimization step: 2807. Total energy = 415.2725 kcal/mol (415.0146 without restraints) Performing minimization step: 2808. Total energy = 415.2383 kcal/mol (414.9804 without restraints) Performing minimization step: 2809. Total energy = 415.2041 kcal/mol (414.9463 without restraints) Performing minimization step: 2810. Total energy = 415.1697 kcal/mol (414.9120 without restraints) Performing minimization step: 2811. Total energy = 415.1356 kcal/mol (414.8779 without restraints) Performing minimization step: 2812. Total energy = 415.1015 kcal/mol (414.8438 without restraints) Performing minimization step: 2813. Total energy = 415.0674 kcal/mol (414.8097 without restraints) Performing minimization step: 2814. Total energy = 415.0333 kcal/mol (414.7756 without restraints) Performing minimization step: 2815. Total energy = 414.9992 kcal/mol (414.7416 without restraints) Performing minimization step: 2816. Total energy = 414.9651 kcal/mol (414.7075 without restraints) Performing minimization step: 2817. Total energy = 414.9308 kcal/mol (414.6733 without restraints) Performing minimization step: 2818. Total energy = 414.8967 kcal/mol (414.6392 without restraints) Performing minimization step: 2819. Total energy = 414.8627 kcal/mol (414.6052 without restraints) Performing minimization step: 2820. Total energy = 414.8287 kcal/mol (414.5713 without restraints) Performing minimization step: 2821. Total energy = 414.7947 kcal/mol (414.5373 without restraints) Performing minimization step: 2822. Total energy = 414.7607 kcal/mol (414.5033 without restraints) Performing minimization step: 2823. Total energy = 414.7267 kcal/mol (414.4694 without restraints) Performing minimization step: 2824. Total energy = 414.6927 kcal/mol (414.4354 without restraints) Performing minimization step: 2825. Total energy = 414.6583 kcal/mol (414.4011 without restraints) Performing minimization step: 2826. Total energy = 414.6242 kcal/mol (414.3670 without restraints) Performing minimization step: 2827. Total energy = 414.5902 kcal/mol (414.3331 without restraints) Performing minimization step: 2828. Total energy = 414.5563 kcal/mol (414.2992 without restraints) Performing minimization step: 2829. Total energy = 414.5225 kcal/mol (414.2653 without restraints) Performing minimization step: 2830. Total energy = 414.4885 kcal/mol (414.2315 without restraints) Performing minimization step: 2831. Total energy = 414.4546 kcal/mol (414.1976 without restraints) Performing minimization step: 2832. Total energy = 414.4207 kcal/mol (414.1637 without restraints) Performing minimization step: 2833. Total energy = 414.3869 kcal/mol (414.1299 without restraints) Performing minimization step: 2834. Total energy = 414.3531 kcal/mol (414.0963 without restraints) Performing minimization step: 2835. Total energy = 414.3194 kcal/mol (414.0625 without restraints) Performing minimization step: 2836. Total energy = 414.2856 kcal/mol (414.0287 without restraints) Performing minimization step: 2837. Total energy = 414.2517 kcal/mol (413.9949 without restraints) Performing minimization step: 2838. Total energy = 414.2179 kcal/mol (413.9611 without restraints) Performing minimization step: 2839. Total energy = 414.1839 kcal/mol (413.9272 without restraints) Performing minimization step: 2840. Total energy = 414.1504 kcal/mol (413.8937 without restraints) Performing minimization step: 2841. Total energy = 414.1166 kcal/mol (413.8600 without restraints) Performing minimization step: 2842. Total energy = 414.0829 kcal/mol (413.8263 without restraints) Performing minimization step: 2843. Total energy = 414.0491 kcal/mol (413.7926 without restraints) Performing minimization step: 2844. Total energy = 414.0152 kcal/mol (413.7587 without restraints) Performing minimization step: 2845. Total energy = 413.9815 kcal/mol (413.7250 without restraints) Performing minimization step: 2846. Total energy = 413.9478 kcal/mol (413.6914 without restraints) Performing minimization step: 2847. Total energy = 413.9141 kcal/mol (413.6577 without restraints) Performing minimization step: 2848. Total energy = 413.8804 kcal/mol (413.6240 without restraints) Performing minimization step: 2849. Total energy = 413.8468 kcal/mol (413.5904 without restraints) Performing minimization step: 2850. Total energy = 413.8130 kcal/mol (413.5566 without restraints) Performing minimization step: 2851. Total energy = 413.7794 kcal/mol (413.5230 without restraints) Performing minimization step: 2852. Total energy = 413.7457 kcal/mol (413.4895 without restraints) Performing minimization step: 2853. Total energy = 413.7118 kcal/mol (413.4556 without restraints) Performing minimization step: 2854. Total energy = 413.6784 kcal/mol (413.4222 without restraints) Performing minimization step: 2855. Total energy = 413.6448 kcal/mol (413.3886 without restraints) Performing minimization step: 2856. Total energy = 413.6112 kcal/mol (413.3551 without restraints) Performing minimization step: 2857. Total energy = 413.5777 kcal/mol (413.3216 without restraints) Performing minimization step: 2858. Total energy = 413.5440 kcal/mol (413.2878 without restraints) Performing minimization step: 2859. Total energy = 413.5102 kcal/mol (413.2541 without restraints) Performing minimization step: 2860. Total energy = 413.4766 kcal/mol (413.2206 without restraints) Performing minimization step: 2861. Total energy = 413.4431 kcal/mol (413.1871 without restraints) Performing minimization step: 2862. Total energy = 413.4095 kcal/mol (413.1536 without restraints) Performing minimization step: 2863. Total energy = 413.3760 kcal/mol (413.1202 without restraints) Performing minimization step: 2864. Total energy = 413.3424 kcal/mol (413.0866 without restraints) Performing minimization step: 2865. Total energy = 413.3089 kcal/mol (413.0531 without restraints) Performing minimization step: 2866. Total energy = 413.2759 kcal/mol (413.0202 without restraints) Performing minimization step: 2867. Total energy = 413.2423 kcal/mol (412.9866 without restraints) Performing minimization step: 2868. Total energy = 413.2089 kcal/mol (412.9532 without restraints) Performing minimization step: 2869. Total energy = 413.1755 kcal/mol (412.9198 without restraints) Performing minimization step: 2870. Total energy = 413.1420 kcal/mol (412.8864 without restraints) Performing minimization step: 2871. Total energy = 413.1086 kcal/mol (412.8530 without restraints) Performing minimization step: 2872. Total energy = 413.0752 kcal/mol (412.8197 without restraints) Performing minimization step: 2873. Total energy = 413.0419 kcal/mol (412.7864 without restraints) Performing minimization step: 2874. Total energy = 413.0085 kcal/mol (412.7530 without restraints) Performing minimization step: 2875. Total energy = 412.9752 kcal/mol (412.7198 without restraints) Performing minimization step: 2876. Total energy = 412.9419 kcal/mol (412.6865 without restraints) Performing minimization step: 2877. Total energy = 412.9088 kcal/mol (412.6536 without restraints) Performing minimization step: 2878. Total energy = 412.8757 kcal/mol (412.6203 without restraints) Performing minimization step: 2879. Total energy = 412.8424 kcal/mol (412.5871 without restraints) Performing minimization step: 2880. Total energy = 412.8091 kcal/mol (412.5539 without restraints) Performing minimization step: 2881. Total energy = 412.7759 kcal/mol (412.5206 without restraints) Performing minimization step: 2882. Total energy = 412.7426 kcal/mol (412.4874 without restraints) Performing minimization step: 2883. Total energy = 412.7094 kcal/mol (412.4542 without restraints) Performing minimization step: 2884. Total energy = 412.6761 kcal/mol (412.4210 without restraints) Performing minimization step: 2885. Total energy = 412.6431 kcal/mol (412.3881 without restraints) Performing minimization step: 2886. Total energy = 412.6099 kcal/mol (412.3549 without restraints) Performing minimization step: 2887. Total energy = 412.5770 kcal/mol (412.3220 without restraints) Performing minimization step: 2888. Total energy = 412.5437 kcal/mol (412.2887 without restraints) Performing minimization step: 2889. Total energy = 412.5105 kcal/mol (412.2556 without restraints) Performing minimization step: 2890. Total energy = 412.4774 kcal/mol (412.2225 without restraints) Performing minimization step: 2891. Total energy = 412.4442 kcal/mol (412.1894 without restraints) Performing minimization step: 2892. Total energy = 412.4113 kcal/mol (412.1564 without restraints) Performing minimization step: 2893. Total energy = 412.3782 kcal/mol (412.1234 without restraints) Performing minimization step: 2894. Total energy = 412.3452 kcal/mol (412.0904 without restraints) Performing minimization step: 2895. Total energy = 412.3123 kcal/mol (412.0575 without restraints) Performing minimization step: 2896. Total energy = 412.2792 kcal/mol (412.0245 without restraints) Performing minimization step: 2897. Total energy = 412.2461 kcal/mol (411.9915 without restraints) Performing minimization step: 2898. Total energy = 412.2131 kcal/mol (411.9584 without restraints) Performing minimization step: 2899. Total energy = 412.1800 kcal/mol (411.9254 without restraints) Performing minimization step: 2900. Total energy = 412.1470 kcal/mol (411.8924 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 412.1138 kcal/mol (411.8592 without restraints) Performing minimization step: 2902. Total energy = 412.0804 kcal/mol (411.8258 without restraints) Performing minimization step: 2903. Total energy = 412.0474 kcal/mol (411.7929 without restraints) Performing minimization step: 2904. Total energy = 412.0143 kcal/mol (411.7599 without restraints) Performing minimization step: 2905. Total energy = 411.9814 kcal/mol (411.7270 without restraints) Performing minimization step: 2906. Total energy = 411.9485 kcal/mol (411.6941 without restraints) Performing minimization step: 2907. Total energy = 411.9158 kcal/mol (411.6616 without restraints) Performing minimization step: 2908. Total energy = 411.8830 kcal/mol (411.6287 without restraints) Performing minimization step: 2909. Total energy = 411.8501 kcal/mol (411.5959 without restraints) Performing minimization step: 2910. Total energy = 411.8172 kcal/mol (411.5630 without restraints) Performing minimization step: 2911. Total energy = 411.7844 kcal/mol (411.5302 without restraints) Performing minimization step: 2912. Total energy = 411.7515 kcal/mol (411.4974 without restraints) Performing minimization step: 2913. Total energy = 411.7187 kcal/mol (411.4645 without restraints) Performing minimization step: 2914. Total energy = 411.6858 kcal/mol (411.4317 without restraints) Performing minimization step: 2915. Total energy = 411.6529 kcal/mol (411.3989 without restraints) Performing minimization step: 2916. Total energy = 411.6199 kcal/mol (411.3659 without restraints) Performing minimization step: 2917. Total energy = 411.5873 kcal/mol (411.3333 without restraints) Performing minimization step: 2918. Total energy = 411.5545 kcal/mol (411.3005 without restraints) Performing minimization step: 2919. Total energy = 411.5210 kcal/mol (411.2671 without restraints) Performing minimization step: 2920. Total energy = 411.4882 kcal/mol (411.2343 without restraints) Performing minimization step: 2921. Total energy = 411.4557 kcal/mol (411.2018 without restraints) Performing minimization step: 2922. Total energy = 411.4229 kcal/mol (411.1691 without restraints) Performing minimization step: 2923. Total energy = 411.3902 kcal/mol (411.1364 without restraints) Performing minimization step: 2924. Total energy = 411.3575 kcal/mol (411.1037 without restraints) Performing minimization step: 2925. Total energy = 411.3249 kcal/mol (411.0712 without restraints) Performing minimization step: 2926. Total energy = 411.2922 kcal/mol (411.0385 without restraints) Performing minimization step: 2927. Total energy = 411.2597 kcal/mol (411.0060 without restraints) Performing minimization step: 2928. Total energy = 411.2270 kcal/mol (410.9734 without restraints) Performing minimization step: 2929. Total energy = 411.1944 kcal/mol (410.9408 without restraints) Performing minimization step: 2930. Total energy = 411.1619 kcal/mol (410.9082 without restraints) Performing minimization step: 2931. Total energy = 411.1291 kcal/mol (410.8756 without restraints) Performing minimization step: 2932. Total energy = 411.0969 kcal/mol (410.8434 without restraints) Performing minimization step: 2933. Total energy = 411.0642 kcal/mol (410.8107 without restraints) Performing minimization step: 2934. Total energy = 411.0315 kcal/mol (410.7781 without restraints) Performing minimization step: 2935. Total energy = 410.9991 kcal/mol (410.7458 without restraints) Performing minimization step: 2936. Total energy = 410.9663 kcal/mol (410.7130 without restraints) Performing minimization step: 2937. Total energy = 410.9338 kcal/mol (410.6805 without restraints) Performing minimization step: 2938. Total energy = 410.9013 kcal/mol (410.6480 without restraints) Performing minimization step: 2939. Total energy = 410.8687 kcal/mol (410.6155 without restraints) Performing minimization step: 2940. Total energy = 410.8362 kcal/mol (410.5830 without restraints) Performing minimization step: 2941. Total energy = 410.8037 kcal/mol (410.5506 without restraints) Performing minimization step: 2942. Total energy = 410.7713 kcal/mol (410.5181 without restraints) Performing minimization step: 2943. Total energy = 410.7390 kcal/mol (410.4859 without restraints) Performing minimization step: 2944. Total energy = 410.7066 kcal/mol (410.4535 without restraints) Performing minimization step: 2945. Total energy = 410.6741 kcal/mol (410.4211 without restraints) Performing minimization step: 2946. Total energy = 410.6419 kcal/mol (410.3889 without restraints) Performing minimization step: 2947. Total energy = 410.6095 kcal/mol (410.3565 without restraints) Performing minimization step: 2948. Total energy = 410.5771 kcal/mol (410.3241 without restraints) Performing minimization step: 2949. Total energy = 410.5446 kcal/mol (410.2918 without restraints) Performing minimization step: 2950. Total energy = 410.5126 kcal/mol (410.2597 without restraints) Performing minimization step: 2951. Total energy = 410.4805 kcal/mol (410.2276 without restraints) Performing minimization step: 2952. Total energy = 410.4481 kcal/mol (410.1953 without restraints) Performing minimization step: 2953. Total energy = 410.4158 kcal/mol (410.1631 without restraints) Performing minimization step: 2954. Total energy = 410.3835 kcal/mol (410.1308 without restraints) Performing minimization step: 2955. Total energy = 410.3508 kcal/mol (410.0981 without restraints) Performing minimization step: 2956. Total energy = 410.3187 kcal/mol (410.0662 without restraints) Performing minimization step: 2957. Total energy = 410.2866 kcal/mol (410.0339 without restraints) Performing minimization step: 2958. Total energy = 410.2541 kcal/mol (410.0015 without restraints) Performing minimization step: 2959. Total energy = 410.2219 kcal/mol (409.9693 without restraints) Performing minimization step: 2960. Total energy = 410.1899 kcal/mol (409.9373 without restraints) Performing minimization step: 2961. Total energy = 410.1577 kcal/mol (409.9052 without restraints) Performing minimization step: 2962. Total energy = 410.1254 kcal/mol (409.8730 without restraints) Performing minimization step: 2963. Total energy = 410.0933 kcal/mol (409.8408 without restraints) Performing minimization step: 2964. Total energy = 410.0613 kcal/mol (409.8089 without restraints) Performing minimization step: 2965. Total energy = 410.0291 kcal/mol (409.7767 without restraints) Performing minimization step: 2966. Total energy = 409.9971 kcal/mol (409.7447 without restraints) Performing minimization step: 2967. Total energy = 409.9648 kcal/mol (409.7124 without restraints) Performing minimization step: 2968. Total energy = 409.9326 kcal/mol (409.6804 without restraints) Performing minimization step: 2969. Total energy = 409.9005 kcal/mol (409.6483 without restraints) Performing minimization step: 2970. Total energy = 409.8686 kcal/mol (409.6164 without restraints) Performing minimization step: 2971. Total energy = 409.8366 kcal/mol (409.5844 without restraints) Performing minimization step: 2972. Total energy = 409.8047 kcal/mol (409.5526 without restraints) Performing minimization step: 2973. Total energy = 409.7727 kcal/mol (409.5206 without restraints) Performing minimization step: 2974. Total energy = 409.7407 kcal/mol (409.4886 without restraints) Performing minimization step: 2975. Total energy = 409.7086 kcal/mol (409.4566 without restraints) Performing minimization step: 2976. Total energy = 409.6770 kcal/mol (409.4250 without restraints) Performing minimization step: 2977. Total energy = 409.6446 kcal/mol (409.3926 without restraints) Performing minimization step: 2978. Total energy = 409.6126 kcal/mol (409.3606 without restraints) Performing minimization step: 2979. Total energy = 409.5806 kcal/mol (409.3287 without restraints) Performing minimization step: 2980. Total energy = 409.5486 kcal/mol (409.2968 without restraints) Performing minimization step: 2981. Total energy = 409.5169 kcal/mol (409.2651 without restraints) Performing minimization step: 2982. Total energy = 409.4850 kcal/mol (409.2332 without restraints) Performing minimization step: 2983. Total energy = 409.4530 kcal/mol (409.2013 without restraints) Performing minimization step: 2984. Total energy = 409.4213 kcal/mol (409.1696 without restraints) Performing minimization step: 2985. Total energy = 409.3895 kcal/mol (409.1378 without restraints) Performing minimization step: 2986. Total energy = 409.3576 kcal/mol (409.1059 without restraints) Performing minimization step: 2987. Total energy = 409.3257 kcal/mol (409.0741 without restraints) Performing minimization step: 2988. Total energy = 409.2939 kcal/mol (409.0423 without restraints) Performing minimization step: 2989. Total energy = 409.2623 kcal/mol (409.0107 without restraints) Performing minimization step: 2990. Total energy = 409.2305 kcal/mol (408.9789 without restraints) Performing minimization step: 2991. Total energy = 409.1987 kcal/mol (408.9472 without restraints) Performing minimization step: 2992. Total energy = 409.1669 kcal/mol (408.9154 without restraints) Performing minimization step: 2993. Total energy = 409.1351 kcal/mol (408.8837 without restraints) Performing minimization step: 2994. Total energy = 409.1036 kcal/mol (408.8522 without restraints) Performing minimization step: 2995. Total energy = 409.0718 kcal/mol (408.8204 without restraints) Performing minimization step: 2996. Total energy = 409.0403 kcal/mol (408.7890 without restraints) Performing minimization step: 2997. Total energy = 409.0086 kcal/mol (408.7573 without restraints) Performing minimization step: 2998. Total energy = 408.9769 kcal/mol (408.7256 without restraints) Performing minimization step: 2999. Total energy = 408.9453 kcal/mol (408.6941 without restraints) Performing minimization step: 3000. Total energy = 408.9137 kcal/mol (408.6624 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 408.8818 kcal/mol (408.6306 without restraints) Performing minimization step: 3002. Total energy = 408.8501 kcal/mol (408.5990 without restraints) Performing minimization step: 3003. Total energy = 408.8185 kcal/mol (408.5674 without restraints) Performing minimization step: 3004. Total energy = 408.7869 kcal/mol (408.5358 without restraints) Performing minimization step: 3005. Total energy = 408.7551 kcal/mol (408.5041 without restraints) Performing minimization step: 3006. Total energy = 408.7237 kcal/mol (408.4727 without restraints) Performing minimization step: 3007. Total energy = 408.6922 kcal/mol (408.4412 without restraints) Performing minimization step: 3008. Total energy = 408.6607 kcal/mol (408.4097 without restraints) Performing minimization step: 3009. Total energy = 408.6291 kcal/mol (408.3782 without restraints) Performing minimization step: 3010. Total energy = 408.5976 kcal/mol (408.3468 without restraints) Performing minimization step: 3011. Total energy = 408.5661 kcal/mol (408.3153 without restraints) Performing minimization step: 3012. Total energy = 408.5346 kcal/mol (408.2838 without restraints) Performing minimization step: 3013. Total energy = 408.5031 kcal/mol (408.2524 without restraints) Performing minimization step: 3014. Total energy = 408.4717 kcal/mol (408.2209 without restraints) Performing minimization step: 3015. Total energy = 408.4405 kcal/mol (408.1898 without restraints) Performing minimization step: 3016. Total energy = 408.4088 kcal/mol (408.1581 without restraints) Performing minimization step: 3017. Total energy = 408.3775 kcal/mol (408.1267 without restraints) Performing minimization step: 3018. Total energy = 408.3459 kcal/mol (408.0953 without restraints) Performing minimization step: 3019. Total energy = 408.3145 kcal/mol (408.0640 without restraints) Performing minimization step: 3020. Total energy = 408.2832 kcal/mol (408.0326 without restraints) Performing minimization step: 3021. Total energy = 408.2518 kcal/mol (408.0013 without restraints) Performing minimization step: 3022. Total energy = 408.2205 kcal/mol (407.9700 without restraints) Performing minimization step: 3023. Total energy = 408.1891 kcal/mol (407.9387 without restraints) Performing minimization step: 3024. Total energy = 408.1580 kcal/mol (407.9076 without restraints) Performing minimization step: 3025. Total energy = 408.1267 kcal/mol (407.8763 without restraints) Performing minimization step: 3026. Total energy = 408.0954 kcal/mol (407.8451 without restraints) Performing minimization step: 3027. Total energy = 408.0642 kcal/mol (407.8139 without restraints) Performing minimization step: 3028. Total energy = 408.0329 kcal/mol (407.7826 without restraints) Performing minimization step: 3029. Total energy = 408.0017 kcal/mol (407.7514 without restraints) Performing minimization step: 3030. Total energy = 407.9704 kcal/mol (407.7202 without restraints) Performing minimization step: 3031. Total energy = 407.9394 kcal/mol (407.6892 without restraints) Performing minimization step: 3032. Total energy = 407.9083 kcal/mol (407.6581 without restraints) Performing minimization step: 3033. Total energy = 407.8769 kcal/mol (407.6268 without restraints) Performing minimization step: 3034. Total energy = 407.8458 kcal/mol (407.5957 without restraints) Performing minimization step: 3035. Total energy = 407.8146 kcal/mol (407.5645 without restraints) Performing minimization step: 3036. Total energy = 407.7836 kcal/mol (407.5335 without restraints) Performing minimization step: 3037. Total energy = 407.7524 kcal/mol (407.5024 without restraints) Performing minimization step: 3038. Total energy = 407.7213 kcal/mol (407.4713 without restraints) Performing minimization step: 3039. Total energy = 407.6900 kcal/mol (407.4400 without restraints) Performing minimization step: 3040. Total energy = 407.6589 kcal/mol (407.4090 without restraints) Performing minimization step: 3041. Total energy = 407.6278 kcal/mol (407.3779 without restraints) Performing minimization step: 3042. Total energy = 407.5967 kcal/mol (407.3469 without restraints) Performing minimization step: 3043. Total energy = 407.5657 kcal/mol (407.3159 without restraints) Performing minimization step: 3044. Total energy = 407.5347 kcal/mol (407.2849 without restraints) Performing minimization step: 3045. Total energy = 407.5039 kcal/mol (407.2541 without restraints) Performing minimization step: 3046. Total energy = 407.4727 kcal/mol (407.2230 without restraints) Performing minimization step: 3047. Total energy = 407.4417 kcal/mol (407.1920 without restraints) Performing minimization step: 3048. Total energy = 407.4108 kcal/mol (407.1611 without restraints) Performing minimization step: 3049. Total energy = 407.3798 kcal/mol (407.1302 without restraints) Performing minimization step: 3050. Total energy = 407.3489 kcal/mol (407.0994 without restraints) Performing minimization step: 3051. Total energy = 407.3178 kcal/mol (407.0683 without restraints) Performing minimization step: 3052. Total energy = 407.2869 kcal/mol (407.0374 without restraints) Performing minimization step: 3053. Total energy = 407.2563 kcal/mol (407.0068 without restraints) Performing minimization step: 3054. Total energy = 407.2254 kcal/mol (406.9758 without restraints) Performing minimization step: 3055. Total energy = 407.1942 kcal/mol (406.9448 without restraints) Performing minimization step: 3056. Total energy = 407.1636 kcal/mol (406.9142 without restraints) Performing minimization step: 3057. Total energy = 407.1328 kcal/mol (406.8835 without restraints) Performing minimization step: 3058. Total energy = 407.1020 kcal/mol (406.8527 without restraints) Performing minimization step: 3059. Total energy = 407.0713 kcal/mol (406.8220 without restraints) Performing minimization step: 3060. Total energy = 407.0404 kcal/mol (406.7909 without restraints) Performing minimization step: 3061. Total energy = 407.0097 kcal/mol (406.7605 without restraints) Performing minimization step: 3062. Total energy = 406.9790 kcal/mol (406.7298 without restraints) Performing minimization step: 3063. Total energy = 406.9481 kcal/mol (406.6990 without restraints) Performing minimization step: 3064. Total energy = 406.9174 kcal/mol (406.6683 without restraints) Performing minimization step: 3065. Total energy = 406.8867 kcal/mol (406.6377 without restraints) Performing minimization step: 3066. Total energy = 406.8561 kcal/mol (406.6070 without restraints) Performing minimization step: 3067. Total energy = 406.8255 kcal/mol (406.5764 without restraints) Performing minimization step: 3068. Total energy = 406.7948 kcal/mol (406.5459 without restraints) Performing minimization step: 3069. Total energy = 406.7642 kcal/mol (406.5153 without restraints) Performing minimization step: 3070. Total energy = 406.7341 kcal/mol (406.4852 without restraints) Performing minimization step: 3071. Total energy = 406.7036 kcal/mol (406.4547 without restraints) Performing minimization step: 3072. Total energy = 406.6730 kcal/mol (406.4241 without restraints) Performing minimization step: 3073. Total energy = 406.6425 kcal/mol (406.3936 without restraints) Performing minimization step: 3074. Total energy = 406.6119 kcal/mol (406.3632 without restraints) Performing minimization step: 3075. Total energy = 406.5819 kcal/mol (406.3331 without restraints) Performing minimization step: 3076. Total energy = 406.5520 kcal/mol (406.3033 without restraints) Performing minimization step: 3077. Total energy = 406.5216 kcal/mol (406.2729 without restraints) Performing minimization step: 3078. Total energy = 406.4911 kcal/mol (406.2424 without restraints) Performing minimization step: 3079. Total energy = 406.4607 kcal/mol (406.2120 without restraints) Performing minimization step: 3080. Total energy = 406.4302 kcal/mol (406.1816 without restraints) Performing minimization step: 3081. Total energy = 406.4001 kcal/mol (406.1515 without restraints) Performing minimization step: 3082. Total energy = 406.3697 kcal/mol (406.1211 without restraints) Performing minimization step: 3083. Total energy = 406.3393 kcal/mol (406.0908 without restraints) Performing minimization step: 3084. Total energy = 406.3089 kcal/mol (406.0605 without restraints) Performing minimization step: 3085. Total energy = 406.2786 kcal/mol (406.0301 without restraints) Performing minimization step: 3086. Total energy = 406.2483 kcal/mol (405.9999 without restraints) Performing minimization step: 3087. Total energy = 406.2179 kcal/mol (405.9696 without restraints) Performing minimization step: 3088. Total energy = 406.1877 kcal/mol (405.9393 without restraints) Performing minimization step: 3089. Total energy = 406.1578 kcal/mol (405.9095 without restraints) Performing minimization step: 3090. Total energy = 406.1275 kcal/mol (405.8792 without restraints) Performing minimization step: 3091. Total energy = 406.0973 kcal/mol (405.8490 without restraints) Performing minimization step: 3092. Total energy = 406.0669 kcal/mol (405.8187 without restraints) Performing minimization step: 3093. Total energy = 406.0370 kcal/mol (405.7889 without restraints) Performing minimization step: 3094. Total energy = 406.0068 kcal/mol (405.7587 without restraints) Performing minimization step: 3095. Total energy = 405.9768 kcal/mol (405.7287 without restraints) Performing minimization step: 3096. Total energy = 405.9467 kcal/mol (405.6986 without restraints) Performing minimization step: 3097. Total energy = 405.9166 kcal/mol (405.6685 without restraints) Performing minimization step: 3098. Total energy = 405.8864 kcal/mol (405.6384 without restraints) Performing minimization step: 3099. Total energy = 405.8563 kcal/mol (405.6084 without restraints) Performing minimization step: 3100. Total energy = 405.8263 kcal/mol (405.5782 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 405.7961 kcal/mol (405.5482 without restraints) Performing minimization step: 3102. Total energy = 405.7660 kcal/mol (405.5181 without restraints) Performing minimization step: 3103. Total energy = 405.7360 kcal/mol (405.4882 without restraints) Performing minimization step: 3104. Total energy = 405.7062 kcal/mol (405.4584 without restraints) Performing minimization step: 3105. Total energy = 405.6762 kcal/mol (405.4284 without restraints) Performing minimization step: 3106. Total energy = 405.6466 kcal/mol (405.3989 without restraints) Performing minimization step: 3107. Total energy = 405.6167 kcal/mol (405.3689 without restraints) Performing minimization step: 3108. Total energy = 405.5869 kcal/mol (405.3392 without restraints) Performing minimization step: 3109. Total energy = 405.5569 kcal/mol (405.3093 without restraints) Performing minimization step: 3110. Total energy = 405.5270 kcal/mol (405.2794 without restraints) Performing minimization step: 3111. Total energy = 405.4972 kcal/mol (405.2496 without restraints) Performing minimization step: 3112. Total energy = 405.4673 kcal/mol (405.2197 without restraints) Performing minimization step: 3113. Total energy = 405.4373 kcal/mol (405.1898 without restraints) Performing minimization step: 3114. Total energy = 405.4077 kcal/mol (405.1602 without restraints) Performing minimization step: 3115. Total energy = 405.3778 kcal/mol (405.1304 without restraints) Performing minimization step: 3116. Total energy = 405.3480 kcal/mol (405.1006 without restraints) Performing minimization step: 3117. Total energy = 405.3182 kcal/mol (405.0708 without restraints) Performing minimization step: 3118. Total energy = 405.2885 kcal/mol (405.0411 without restraints) Performing minimization step: 3119. Total energy = 405.2583 kcal/mol (405.0110 without restraints) Performing minimization step: 3120. Total energy = 405.2286 kcal/mol (404.9813 without restraints) Performing minimization step: 3121. Total energy = 405.1989 kcal/mol (404.9516 without restraints) Performing minimization step: 3122. Total energy = 405.1692 kcal/mol (404.9220 without restraints) Performing minimization step: 3123. Total energy = 405.1395 kcal/mol (404.8923 without restraints) Performing minimization step: 3124. Total energy = 405.1099 kcal/mol (404.8627 without restraints) Performing minimization step: 3125. Total energy = 405.0802 kcal/mol (404.8331 without restraints) Performing minimization step: 3126. Total energy = 405.0506 kcal/mol (404.8035 without restraints) Performing minimization step: 3127. Total energy = 405.0209 kcal/mol (404.7739 without restraints) Performing minimization step: 3128. Total energy = 404.9913 kcal/mol (404.7443 without restraints) Performing minimization step: 3129. Total energy = 404.9618 kcal/mol (404.7148 without restraints) Performing minimization step: 3130. Total energy = 404.9322 kcal/mol (404.6853 without restraints) Performing minimization step: 3131. Total energy = 404.9027 kcal/mol (404.6557 without restraints) Performing minimization step: 3132. Total energy = 404.8732 kcal/mol (404.6262 without restraints) Performing minimization step: 3133. Total energy = 404.8436 kcal/mol (404.5968 without restraints) Performing minimization step: 3134. Total energy = 404.8142 kcal/mol (404.5673 without restraints) Performing minimization step: 3135. Total energy = 404.7847 kcal/mol (404.5379 without restraints) Performing minimization step: 3136. Total energy = 404.7552 kcal/mol (404.5084 without restraints) Performing minimization step: 3137. Total energy = 404.7258 kcal/mol (404.4790 without restraints) Performing minimization step: 3138. Total energy = 404.6964 kcal/mol (404.4496 without restraints) Performing minimization step: 3139. Total energy = 404.6670 kcal/mol (404.4203 without restraints) Performing minimization step: 3140. Total energy = 404.6372 kcal/mol (404.3906 without restraints) Performing minimization step: 3141. Total energy = 404.6081 kcal/mol (404.3615 without restraints) Performing minimization step: 3142. Total energy = 404.5788 kcal/mol (404.3322 without restraints) Performing minimization step: 3143. Total energy = 404.5493 kcal/mol (404.3027 without restraints) Performing minimization step: 3144. Total energy = 404.5202 kcal/mol (404.2737 without restraints) Performing minimization step: 3145. Total energy = 404.4911 kcal/mol (404.2446 without restraints) Performing minimization step: 3146. Total energy = 404.4620 kcal/mol (404.2155 without restraints) Performing minimization step: 3147. Total energy = 404.4327 kcal/mol (404.1863 without restraints) Performing minimization step: 3148. Total energy = 404.4035 kcal/mol (404.1571 without restraints) Performing minimization step: 3149. Total energy = 404.3742 kcal/mol (404.1279 without restraints) Performing minimization step: 3150. Total energy = 404.3450 kcal/mol (404.0985 without restraints) Performing minimization step: 3151. Total energy = 404.3157 kcal/mol (404.0694 without restraints) Performing minimization step: 3152. Total energy = 404.2865 kcal/mol (404.0402 without restraints) Performing minimization step: 3153. Total energy = 404.2569 kcal/mol (404.0107 without restraints) Performing minimization step: 3154. Total energy = 404.2278 kcal/mol (403.9816 without restraints) Performing minimization step: 3155. Total energy = 404.1987 kcal/mol (403.9525 without restraints) Performing minimization step: 3156. Total energy = 404.1696 kcal/mol (403.9234 without restraints) Performing minimization step: 3157. Total energy = 404.1407 kcal/mol (403.8946 without restraints) Performing minimization step: 3158. Total energy = 404.1114 kcal/mol (403.8654 without restraints) Performing minimization step: 3159. Total energy = 404.0826 kcal/mol (403.8365 without restraints) Performing minimization step: 3160. Total energy = 404.0535 kcal/mol (403.8075 without restraints) Performing minimization step: 3161. Total energy = 404.0245 kcal/mol (403.7785 without restraints) Performing minimization step: 3162. Total energy = 403.9955 kcal/mol (403.7496 without restraints) Performing minimization step: 3163. Total energy = 403.9665 kcal/mol (403.7206 without restraints) Performing minimization step: 3164. Total energy = 403.9376 kcal/mol (403.6917 without restraints) Performing minimization step: 3165. Total energy = 403.9087 kcal/mol (403.6628 without restraints) Performing minimization step: 3166. Total energy = 403.8798 kcal/mol (403.6340 without restraints) Performing minimization step: 3167. Total energy = 403.8509 kcal/mol (403.6051 without restraints) Performing minimization step: 3168. Total energy = 403.8221 kcal/mol (403.5763 without restraints) Performing minimization step: 3169. Total energy = 403.7932 kcal/mol (403.5475 without restraints) Performing minimization step: 3170. Total energy = 403.7645 kcal/mol (403.5189 without restraints) Performing minimization step: 3171. Total energy = 403.7355 kcal/mol (403.4898 without restraints) Performing minimization step: 3172. Total energy = 403.7067 kcal/mol (403.4611 without restraints) Performing minimization step: 3173. Total energy = 403.6777 kcal/mol (403.4320 without restraints) Performing minimization step: 3174. Total energy = 403.6489 kcal/mol (403.4033 without restraints) Performing minimization step: 3175. Total energy = 403.6201 kcal/mol (403.3746 without restraints) Performing minimization step: 3176. Total energy = 403.5916 kcal/mol (403.3461 without restraints) Performing minimization step: 3177. Total energy = 403.5629 kcal/mol (403.3174 without restraints) Performing minimization step: 3178. Total energy = 403.5342 kcal/mol (403.2888 without restraints) Performing minimization step: 3179. Total energy = 403.5055 kcal/mol (403.2601 without restraints) Performing minimization step: 3180. Total energy = 403.4769 kcal/mol (403.2315 without restraints) Performing minimization step: 3181. Total energy = 403.4482 kcal/mol (403.2029 without restraints) Performing minimization step: 3182. Total energy = 403.4197 kcal/mol (403.1744 without restraints) Performing minimization step: 3183. Total energy = 403.3912 kcal/mol (403.1461 without restraints) Performing minimization step: 3184. Total energy = 403.3629 kcal/mol (403.1178 without restraints) Performing minimization step: 3185. Total energy = 403.3347 kcal/mol (403.0895 without restraints) Performing minimization step: 3186. Total energy = 403.3062 kcal/mol (403.0610 without restraints) Performing minimization step: 3187. Total energy = 403.2774 kcal/mol (403.0323 without restraints) Performing minimization step: 3188. Total energy = 403.2489 kcal/mol (403.0038 without restraints) Performing minimization step: 3189. Total energy = 403.2202 kcal/mol (402.9752 without restraints) Performing minimization step: 3190. Total energy = 403.1918 kcal/mol (402.9467 without restraints) Performing minimization step: 3191. Total energy = 403.1632 kcal/mol (402.9181 without restraints) Performing minimization step: 3192. Total energy = 403.1347 kcal/mol (402.8897 without restraints) Performing minimization step: 3193. Total energy = 403.1063 kcal/mol (402.8613 without restraints) Performing minimization step: 3194. Total energy = 403.0777 kcal/mol (402.8328 without restraints) Performing minimization step: 3195. Total energy = 403.0493 kcal/mol (402.8044 without restraints) Performing minimization step: 3196. Total energy = 403.0208 kcal/mol (402.7759 without restraints) Performing minimization step: 3197. Total energy = 402.9925 kcal/mol (402.7477 without restraints) Performing minimization step: 3198. Total energy = 402.9642 kcal/mol (402.7194 without restraints) Performing minimization step: 3199. Total energy = 402.9359 kcal/mol (402.6911 without restraints) Performing minimization step: 3200. Total energy = 402.9077 kcal/mol (402.6629 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 402.8794 kcal/mol (402.6347 without restraints) Performing minimization step: 3202. Total energy = 402.8512 kcal/mol (402.6066 without restraints) Performing minimization step: 3203. Total energy = 402.8232 kcal/mol (402.5786 without restraints) Performing minimization step: 3204. Total energy = 402.7950 kcal/mol (402.5504 without restraints) Performing minimization step: 3205. Total energy = 402.7669 kcal/mol (402.5225 without restraints) Performing minimization step: 3206. Total energy = 402.7389 kcal/mol (402.4943 without restraints) Performing minimization step: 3207. Total energy = 402.7109 kcal/mol (402.4666 without restraints) Performing minimization step: 3208. Total energy = 402.6828 kcal/mol (402.4384 without restraints) Performing minimization step: 3209. Total energy = 402.6545 kcal/mol (402.4101 without restraints) Performing minimization step: 3210. Total energy = 402.6262 kcal/mol (402.3818 without restraints) Performing minimization step: 3211. Total energy = 402.5981 kcal/mol (402.3538 without restraints) Performing minimization step: 3212. Total energy = 402.5701 kcal/mol (402.3258 without restraints) Performing minimization step: 3213. Total energy = 402.5421 kcal/mol (402.2978 without restraints) Performing minimization step: 3214. Total energy = 402.5141 kcal/mol (402.2698 without restraints) Performing minimization step: 3215. Total energy = 402.4861 kcal/mol (402.2418 without restraints) Performing minimization step: 3216. Total energy = 402.4582 kcal/mol (402.2141 without restraints) Performing minimization step: 3217. Total energy = 402.4304 kcal/mol (402.1862 without restraints) Performing minimization step: 3218. Total energy = 402.4026 kcal/mol (402.1585 without restraints) Performing minimization step: 3219. Total energy = 402.3747 kcal/mol (402.1306 without restraints) Performing minimization step: 3220. Total energy = 402.3468 kcal/mol (402.1028 without restraints) Performing minimization step: 3221. Total energy = 402.3190 kcal/mol (402.0749 without restraints) Performing minimization step: 3222. Total energy = 402.2911 kcal/mol (402.0471 without restraints) Performing minimization step: 3223. Total energy = 402.2633 kcal/mol (402.0193 without restraints) Performing minimization step: 3224. Total energy = 402.2354 kcal/mol (401.9915 without restraints) Performing minimization step: 3225. Total energy = 402.2076 kcal/mol (401.9637 without restraints) Performing minimization step: 3226. Total energy = 402.1794 kcal/mol (401.9356 without restraints) Performing minimization step: 3227. Total energy = 402.1518 kcal/mol (401.9082 without restraints) Performing minimization step: 3228. Total energy = 402.1241 kcal/mol (401.8803 without restraints) Performing minimization step: 3229. Total energy = 402.0964 kcal/mol (401.8526 without restraints) Performing minimization step: 3230. Total energy = 402.0687 kcal/mol (401.8249 without restraints) Performing minimization step: 3231. Total energy = 402.0410 kcal/mol (401.7972 without restraints) Performing minimization step: 3232. Total energy = 402.0133 kcal/mol (401.7696 without restraints) Performing minimization step: 3233. Total energy = 401.9855 kcal/mol (401.7418 without restraints) Performing minimization step: 3234. Total energy = 401.9577 kcal/mol (401.7140 without restraints) Performing minimization step: 3235. Total energy = 401.9301 kcal/mol (401.6865 without restraints) Performing minimization step: 3236. Total energy = 401.9025 kcal/mol (401.6589 without restraints) Performing minimization step: 3237. Total energy = 401.8748 kcal/mol (401.6313 without restraints) Performing minimization step: 3238. Total energy = 401.8473 kcal/mol (401.6038 without restraints) Performing minimization step: 3239. Total energy = 401.8202 kcal/mol (401.5768 without restraints) Performing minimization step: 3240. Total energy = 401.7927 kcal/mol (401.5493 without restraints) Performing minimization step: 3241. Total energy = 401.7653 kcal/mol (401.5219 without restraints) Performing minimization step: 3242. Total energy = 401.7378 kcal/mol (401.4944 without restraints) Performing minimization step: 3243. Total energy = 401.7103 kcal/mol (401.4670 without restraints) Performing minimization step: 3244. Total energy = 401.6835 kcal/mol (401.4402 without restraints) Performing minimization step: 3245. Total energy = 401.6563 kcal/mol (401.4130 without restraints) Performing minimization step: 3246. Total energy = 401.6290 kcal/mol (401.3857 without restraints) Performing minimization step: 3247. Total energy = 401.6016 kcal/mol (401.3584 without restraints) Performing minimization step: 3248. Total energy = 401.5744 kcal/mol (401.3313 without restraints) Performing minimization step: 3249. Total energy = 401.5470 kcal/mol (401.3037 without restraints) Performing minimization step: 3250. Total energy = 401.5195 kcal/mol (401.2764 without restraints) Performing minimization step: 3251. Total energy = 401.4922 kcal/mol (401.2492 without restraints) Performing minimization step: 3252. Total energy = 401.4654 kcal/mol (401.2224 without restraints) Performing minimization step: 3253. Total energy = 401.4384 kcal/mol (401.1954 without restraints) Performing minimization step: 3254. Total energy = 401.4112 kcal/mol (401.1682 without restraints) Performing minimization step: 3255. Total energy = 401.3841 kcal/mol (401.1412 without restraints) Performing minimization step: 3256. Total energy = 401.3570 kcal/mol (401.1140 without restraints) Performing minimization step: 3257. Total energy = 401.3296 kcal/mol (401.0867 without restraints) Performing minimization step: 3258. Total energy = 401.3024 kcal/mol (401.0596 without restraints) Performing minimization step: 3259. Total energy = 401.2753 kcal/mol (401.0325 without restraints) Performing minimization step: 3260. Total energy = 401.2486 kcal/mol (401.0059 without restraints) Performing minimization step: 3261. Total energy = 402.0961 kcal/mol (400.9844 without restraints) Performing minimization step: 3262. Total energy = 401.1998 kcal/mol (400.9572 without restraints) Performing minimization step: 3263. Total energy = 401.1726 kcal/mol (400.9300 without restraints) Performing minimization step: 3264. Total energy = 401.1453 kcal/mol (400.9028 without restraints) Performing minimization step: 3265. Total energy = 401.1182 kcal/mol (400.8757 without restraints) Performing minimization step: 3266. Total energy = 401.0911 kcal/mol (400.8487 without restraints) Performing minimization step: 3267. Total energy = 401.0641 kcal/mol (400.8217 without restraints) Performing minimization step: 3268. Total energy = 401.0370 kcal/mol (400.7947 without restraints) Performing minimization step: 3269. Total energy = 401.0102 kcal/mol (400.7679 without restraints) Performing minimization step: 3270. Total energy = 400.9833 kcal/mol (400.7410 without restraints) Performing minimization step: 3271. Total energy = 400.9561 kcal/mol (400.7138 without restraints) Performing minimization step: 3272. Total energy = 400.9292 kcal/mol (400.6871 without restraints) Performing minimization step: 3273. Total energy = 400.9026 kcal/mol (400.6604 without restraints) Performing minimization step: 3274. Total energy = 400.8759 kcal/mol (400.6338 without restraints) Performing minimization step: 3275. Total energy = 400.8490 kcal/mol (400.6069 without restraints) Performing minimization step: 3276. Total energy = 400.8222 kcal/mol (400.5801 without restraints) Performing minimization step: 3277. Total energy = 400.7950 kcal/mol (400.5530 without restraints) Performing minimization step: 3278. Total energy = 400.7688 kcal/mol (400.5268 without restraints) Performing minimization step: 3279. Total energy = 400.7420 kcal/mol (400.5000 without restraints) Performing minimization step: 3280. Total energy = 400.7154 kcal/mol (400.4735 without restraints) Performing minimization step: 3281. Total energy = 400.6887 kcal/mol (400.4468 without restraints) Performing minimization step: 3282. Total energy = 400.6619 kcal/mol (400.4200 without restraints) Performing minimization step: 3283. Total energy = 400.6352 kcal/mol (400.3934 without restraints) Performing minimization step: 3284. Total energy = 400.6087 kcal/mol (400.3670 without restraints) Performing minimization step: 3285. Total energy = 400.5822 kcal/mol (400.3404 without restraints) Performing minimization step: 3286. Total energy = 400.5555 kcal/mol (400.3138 without restraints) Performing minimization step: 3287. Total energy = 400.5289 kcal/mol (400.2872 without restraints) Performing minimization step: 3288. Total energy = 400.5022 kcal/mol (400.2604 without restraints) Performing minimization step: 3289. Total energy = 400.4757 kcal/mol (400.2340 without restraints) Performing minimization step: 3290. Total energy = 400.4492 kcal/mol (400.2075 without restraints) Performing minimization step: 3291. Total energy = 400.4226 kcal/mol (400.1810 without restraints) Performing minimization step: 3292. Total energy = 400.3961 kcal/mol (400.1546 without restraints) Performing minimization step: 3293. Total energy = 400.3696 kcal/mol (400.1281 without restraints) Performing minimization step: 3294. Total energy = 400.3432 kcal/mol (400.1016 without restraints) Performing minimization step: 3295. Total energy = 400.3167 kcal/mol (400.0752 without restraints) Performing minimization step: 3296. Total energy = 400.2902 kcal/mol (400.0488 without restraints) Performing minimization step: 3297. Total energy = 400.2642 kcal/mol (400.0228 without restraints) Performing minimization step: 3298. Total energy = 400.2377 kcal/mol (399.9964 without restraints) Performing minimization step: 3299. Total energy = 400.2114 kcal/mol (399.9701 without restraints) Performing minimization step: 3300. Total energy = 400.1851 kcal/mol (399.9437 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 400.1584 kcal/mol (399.9171 without restraints) Performing minimization step: 3302. Total energy = 400.1321 kcal/mol (399.8909 without restraints) Performing minimization step: 3303. Total energy = 400.1058 kcal/mol (399.8646 without restraints) Performing minimization step: 3304. Total energy = 400.0795 kcal/mol (399.8383 without restraints) Performing minimization step: 3305. Total energy = 400.0530 kcal/mol (399.8117 without restraints) Performing minimization step: 3306. Total energy = 400.0266 kcal/mol (399.7855 without restraints) Performing minimization step: 3307. Total energy = 400.0004 kcal/mol (399.7593 without restraints) Performing minimization step: 3308. Total energy = 399.9742 kcal/mol (399.7331 without restraints) Performing minimization step: 3309. Total energy = 399.9480 kcal/mol (399.7070 without restraints) Performing minimization step: 3310. Total energy = 399.9219 kcal/mol (399.6809 without restraints) Performing minimization step: 3311. Total energy = 399.8958 kcal/mol (399.6548 without restraints) Performing minimization step: 3312. Total energy = 399.8697 kcal/mol (399.6287 without restraints) Performing minimization step: 3313. Total energy = 399.8436 kcal/mol (399.6027 without restraints) Performing minimization step: 3314. Total energy = 399.8175 kcal/mol (399.5766 without restraints) Performing minimization step: 3315. Total energy = 399.7914 kcal/mol (399.5506 without restraints) Performing minimization step: 3316. Total energy = 399.7654 kcal/mol (399.5246 without restraints) Performing minimization step: 3317. Total energy = 399.7394 kcal/mol (399.4987 without restraints) Performing minimization step: 3318. Total energy = 399.7135 kcal/mol (399.4727 without restraints) Performing minimization step: 3319. Total energy = 399.6875 kcal/mol (399.4468 without restraints) Performing minimization step: 3320. Total energy = 399.6615 kcal/mol (399.4208 without restraints) Performing minimization step: 3321. Total energy = 399.6358 kcal/mol (399.3951 without restraints) Performing minimization step: 3322. Total energy = 399.6099 kcal/mol (399.3694 without restraints) Performing minimization step: 3323. Total energy = 399.5841 kcal/mol (399.3435 without restraints) Performing minimization step: 3324. Total energy = 399.5583 kcal/mol (399.3179 without restraints) Performing minimization step: 3325. Total energy = 399.5327 kcal/mol (399.2922 without restraints) Performing minimization step: 3326. Total energy = 399.5069 kcal/mol (399.2664 without restraints) Performing minimization step: 3327. Total energy = 399.4811 kcal/mol (399.2406 without restraints) Performing minimization step: 3328. Total energy = 399.4554 kcal/mol (399.2150 without restraints) Performing minimization step: 3329. Total energy = 399.4297 kcal/mol (399.1893 without restraints) Performing minimization step: 3330. Total energy = 399.4039 kcal/mol (399.1635 without restraints) Performing minimization step: 3331. Total energy = 399.3781 kcal/mol (399.1378 without restraints) Performing minimization step: 3332. Total energy = 399.3524 kcal/mol (399.1121 without restraints) Performing minimization step: 3333. Total energy = 399.3266 kcal/mol (399.0862 without restraints) Performing minimization step: 3334. Total energy = 399.3008 kcal/mol (399.0605 without restraints) Performing minimization step: 3335. Total energy = 399.2751 kcal/mol (399.0349 without restraints) Performing minimization step: 3336. Total energy = 399.2495 kcal/mol (399.0093 without restraints) Performing minimization step: 3337. Total energy = 399.2239 kcal/mol (398.9837 without restraints) Performing minimization step: 3338. Total energy = 399.1982 kcal/mol (398.9580 without restraints) Performing minimization step: 3339. Total energy = 399.1725 kcal/mol (398.9324 without restraints) Performing minimization step: 3340. Total energy = 399.1469 kcal/mol (398.9069 without restraints) Performing minimization step: 3341. Total energy = 399.1214 kcal/mol (398.8813 without restraints) Performing minimization step: 3342. Total energy = 399.0958 kcal/mol (398.8558 without restraints) Performing minimization step: 3343. Total energy = 399.0703 kcal/mol (398.8304 without restraints) Performing minimization step: 3344. Total energy = 399.0449 kcal/mol (398.8049 without restraints) Performing minimization step: 3345. Total energy = 399.0192 kcal/mol (398.7793 without restraints) Performing minimization step: 3346. Total energy = 398.9937 kcal/mol (398.7539 without restraints) Performing minimization step: 3347. Total energy = 398.9683 kcal/mol (398.7285 without restraints) Performing minimization step: 3348. Total energy = 398.9426 kcal/mol (398.7027 without restraints) Performing minimization step: 3349. Total energy = 398.9170 kcal/mol (398.6771 without restraints) Performing minimization step: 3350. Total energy = 398.8915 kcal/mol (398.6518 without restraints) Performing minimization step: 3351. Total energy = 398.8662 kcal/mol (398.6265 without restraints) Performing minimization step: 3352. Total energy = 398.8406 kcal/mol (398.6009 without restraints) Performing minimization step: 3353. Total energy = 398.8152 kcal/mol (398.5756 without restraints) Performing minimization step: 3354. Total energy = 398.7899 kcal/mol (398.5503 without restraints) Performing minimization step: 3355. Total energy = 398.7646 kcal/mol (398.5250 without restraints) Performing minimization step: 3356. Total energy = 398.7393 kcal/mol (398.4999 without restraints) Performing minimization step: 3357. Total energy = 398.7142 kcal/mol (398.4747 without restraints) Performing minimization step: 3358. Total energy = 398.6890 kcal/mol (398.4495 without restraints) Performing minimization step: 3359. Total energy = 398.6638 kcal/mol (398.4243 without restraints) Performing minimization step: 3360. Total energy = 398.6388 kcal/mol (398.3994 without restraints) Performing minimization step: 3361. Total energy = 398.6137 kcal/mol (398.3743 without restraints) Performing minimization step: 3362. Total energy = 398.5884 kcal/mol (398.3490 without restraints) Performing minimization step: 3363. Total energy = 398.5632 kcal/mol (398.3239 without restraints) Performing minimization step: 3364. Total energy = 398.5381 kcal/mol (398.2988 without restraints) Performing minimization step: 3365. Total energy = 398.5132 kcal/mol (398.2739 without restraints) Performing minimization step: 3366. Total energy = 398.4878 kcal/mol (398.2486 without restraints) Performing minimization step: 3367. Total energy = 398.4628 kcal/mol (398.2236 without restraints) Performing minimization step: 3368. Total energy = 398.4379 kcal/mol (398.1987 without restraints) Performing minimization step: 3369. Total energy = 398.4129 kcal/mol (398.1738 without restraints) Performing minimization step: 3370. Total energy = 398.3881 kcal/mol (398.1490 without restraints) Performing minimization step: 3371. Total energy = 398.3631 kcal/mol (398.1240 without restraints) Performing minimization step: 3372. Total energy = 398.3380 kcal/mol (398.0989 without restraints) Performing minimization step: 3373. Total energy = 398.3128 kcal/mol (398.0738 without restraints) Performing minimization step: 3374. Total energy = 398.2880 kcal/mol (398.0489 without restraints) Performing minimization step: 3375. Total energy = 398.2632 kcal/mol (398.0242 without restraints) Performing minimization step: 3376. Total energy = 398.2383 kcal/mol (397.9994 without restraints) Performing minimization step: 3377. Total energy = 398.2135 kcal/mol (397.9746 without restraints) Performing minimization step: 3378. Total energy = 398.1883 kcal/mol (397.9495 without restraints) Performing minimization step: 3379. Total energy = 398.1633 kcal/mol (397.9245 without restraints) Performing minimization step: 3380. Total energy = 398.1386 kcal/mol (397.8998 without restraints) Performing minimization step: 3381. Total energy = 398.1138 kcal/mol (397.8750 without restraints) Performing minimization step: 3382. Total energy = 398.0890 kcal/mol (397.8503 without restraints) Performing minimization step: 3383. Total energy = 398.0641 kcal/mol (397.8253 without restraints) Performing minimization step: 3384. Total energy = 398.0394 kcal/mol (397.8008 without restraints) Performing minimization step: 3385. Total energy = 398.0150 kcal/mol (397.7763 without restraints) Performing minimization step: 3386. Total energy = 397.9902 kcal/mol (397.7516 without restraints) Performing minimization step: 3387. Total energy = 397.9656 kcal/mol (397.7270 without restraints) Performing minimization step: 3388. Total energy = 397.9409 kcal/mol (397.7024 without restraints) Performing minimization step: 3389. Total energy = 397.9162 kcal/mol (397.6777 without restraints) Performing minimization step: 3390. Total energy = 397.8916 kcal/mol (397.6531 without restraints) Performing minimization step: 3391. Total energy = 397.8672 kcal/mol (397.6287 without restraints) Performing minimization step: 3392. Total energy = 397.8426 kcal/mol (397.6042 without restraints) Performing minimization step: 3393. Total energy = 397.8182 kcal/mol (397.5801 without restraints) Performing minimization step: 3394. Total energy = 397.7939 kcal/mol (397.5556 without restraints) Performing minimization step: 3395. Total energy = 397.7694 kcal/mol (397.5311 without restraints) Performing minimization step: 3396. Total energy = 397.7447 kcal/mol (397.5064 without restraints) Performing minimization step: 3397. Total energy = 397.7202 kcal/mol (397.4819 without restraints) Performing minimization step: 3398. Total energy = 397.6957 kcal/mol (397.4575 without restraints) Performing minimization step: 3399. Total energy = 397.6708 kcal/mol (397.4326 without restraints) Performing minimization step: 3400. Total energy = 397.6466 kcal/mol (397.4084 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 397.6220 kcal/mol (397.3839 without restraints) Performing minimization step: 3402. Total energy = 397.5976 kcal/mol (397.3595 without restraints) Performing minimization step: 3403. Total energy = 397.5730 kcal/mol (397.3349 without restraints) Performing minimization step: 3404. Total energy = 397.5486 kcal/mol (397.3106 without restraints) Performing minimization step: 3405. Total energy = 397.5243 kcal/mol (397.2863 without restraints) Performing minimization step: 3406. Total energy = 397.5000 kcal/mol (397.2620 without restraints) Performing minimization step: 3407. Total energy = 397.4757 kcal/mol (397.2378 without restraints) Performing minimization step: 3408. Total energy = 397.4514 kcal/mol (397.2135 without restraints) Performing minimization step: 3409. Total energy = 397.4274 kcal/mol (397.1895 without restraints) Performing minimization step: 3410. Total energy = 397.4033 kcal/mol (397.1655 without restraints) Performing minimization step: 3411. Total energy = 397.3791 kcal/mol (397.1413 without restraints) Performing minimization step: 3412. Total energy = 397.3549 kcal/mol (397.1171 without restraints) Performing minimization step: 3413. Total energy = 397.3307 kcal/mol (397.0929 without restraints) Performing minimization step: 3414. Total energy = 397.3065 kcal/mol (397.0688 without restraints) Performing minimization step: 3415. Total energy = 397.2823 kcal/mol (397.0447 without restraints) Performing minimization step: 3416. Total energy = 397.2584 kcal/mol (397.0208 without restraints) Performing minimization step: 3417. Total energy = 397.2343 kcal/mol (396.9967 without restraints) Performing minimization step: 3418. Total energy = 397.2102 kcal/mol (396.9726 without restraints) Performing minimization step: 3419. Total energy = 397.1861 kcal/mol (396.9485 without restraints) Performing minimization step: 3420. Total energy = 397.1620 kcal/mol (396.9245 without restraints) Performing minimization step: 3421. Total energy = 397.1378 kcal/mol (396.9003 without restraints) Performing minimization step: 3422. Total energy = 397.1142 kcal/mol (396.8767 without restraints) Performing minimization step: 3423. Total energy = 397.0902 kcal/mol (396.8528 without restraints) Performing minimization step: 3424. Total energy = 397.0662 kcal/mol (396.8288 without restraints) Performing minimization step: 3425. Total energy = 397.0420 kcal/mol (396.8047 without restraints) Performing minimization step: 3426. Total energy = 397.0181 kcal/mol (396.7807 without restraints) Performing minimization step: 3427. Total energy = 396.9941 kcal/mol (396.7568 without restraints) Performing minimization step: 3428. Total energy = 396.9702 kcal/mol (396.7329 without restraints) Performing minimization step: 3429. Total energy = 396.9461 kcal/mol (396.7088 without restraints) Performing minimization step: 3430. Total energy = 396.9222 kcal/mol (396.6850 without restraints) Performing minimization step: 3431. Total energy = 396.8983 kcal/mol (396.6611 without restraints) Performing minimization step: 3432. Total energy = 396.8746 kcal/mol (396.6374 without restraints) Performing minimization step: 3433. Total energy = 396.8507 kcal/mol (396.6136 without restraints) Performing minimization step: 3434. Total energy = 396.8273 kcal/mol (396.5902 without restraints) Performing minimization step: 3435. Total energy = 396.8035 kcal/mol (396.5664 without restraints) Performing minimization step: 3436. Total energy = 396.7797 kcal/mol (396.5427 without restraints) Performing minimization step: 3437. Total energy = 396.7561 kcal/mol (396.5192 without restraints) Performing minimization step: 3438. Total energy = 396.7324 kcal/mol (396.4954 without restraints) Performing minimization step: 3439. Total energy = 396.7087 kcal/mol (396.4717 without restraints) Performing minimization step: 3440. Total energy = 396.6850 kcal/mol (396.4481 without restraints) Performing minimization step: 3441. Total energy = 396.6613 kcal/mol (396.4244 without restraints) Performing minimization step: 3442. Total energy = 396.6374 kcal/mol (396.4006 without restraints) Performing minimization step: 3443. Total energy = 396.6138 kcal/mol (396.3770 without restraints) Performing minimization step: 3444. Total energy = 396.5905 kcal/mol (396.3538 without restraints) Performing minimization step: 3445. Total energy = 396.5669 kcal/mol (396.3302 without restraints) Performing minimization step: 3446. Total energy = 396.5437 kcal/mol (396.3070 without restraints) Performing minimization step: 3447. Total energy = 396.5201 kcal/mol (396.2834 without restraints) Performing minimization step: 3448. Total energy = 396.4968 kcal/mol (396.2601 without restraints) Performing minimization step: 3449. Total energy = 396.4733 kcal/mol (396.2368 without restraints) Performing minimization step: 3450. Total energy = 396.4499 kcal/mol (396.2133 without restraints) Performing minimization step: 3451. Total energy = 396.4264 kcal/mol (396.1898 without restraints) Performing minimization step: 3452. Total energy = 396.4027 kcal/mol (396.1662 without restraints) Performing minimization step: 3453. Total energy = 396.3790 kcal/mol (396.1425 without restraints) Performing minimization step: 3454. Total energy = 396.3555 kcal/mol (396.1190 without restraints) Performing minimization step: 3455. Total energy = 396.3318 kcal/mol (396.0954 without restraints) Performing minimization step: 3456. Total energy = 396.3085 kcal/mol (396.0722 without restraints) Performing minimization step: 3457. Total energy = 396.2851 kcal/mol (396.0488 without restraints) Performing minimization step: 3458. Total energy = 396.2617 kcal/mol (396.0254 without restraints) Performing minimization step: 3459. Total energy = 396.2384 kcal/mol (396.0021 without restraints) Performing minimization step: 3460. Total energy = 396.2147 kcal/mol (395.9785 without restraints) Performing minimization step: 3461. Total energy = 396.1914 kcal/mol (395.9552 without restraints) Performing minimization step: 3462. Total energy = 396.1681 kcal/mol (395.9319 without restraints) Performing minimization step: 3463. Total energy = 396.1447 kcal/mol (395.9086 without restraints) Performing minimization step: 3464. Total energy = 396.1216 kcal/mol (395.8855 without restraints) Performing minimization step: 3465. Total energy = 396.0984 kcal/mol (395.8623 without restraints) Performing minimization step: 3466. Total energy = 396.0749 kcal/mol (395.8388 without restraints) Performing minimization step: 3467. Total energy = 396.0516 kcal/mol (395.8156 without restraints) Performing minimization step: 3468. Total energy = 396.0284 kcal/mol (395.7924 without restraints) Performing minimization step: 3469. Total energy = 396.0052 kcal/mol (395.7692 without restraints) Performing minimization step: 3470. Total energy = 395.9820 kcal/mol (395.7461 without restraints) Performing minimization step: 3471. Total energy = 395.9588 kcal/mol (395.7229 without restraints) Performing minimization step: 3472. Total energy = 395.9357 kcal/mol (395.6998 without restraints) Performing minimization step: 3473. Total energy = 395.9127 kcal/mol (395.6770 without restraints) Performing minimization step: 3474. Total energy = 395.8896 kcal/mol (395.6537 without restraints) Performing minimization step: 3475. Total energy = 395.8664 kcal/mol (395.6306 without restraints) Performing minimization step: 3476. Total energy = 395.8433 kcal/mol (395.6076 without restraints) Performing minimization step: 3477. Total energy = 395.8203 kcal/mol (395.5846 without restraints) Performing minimization step: 3478. Total energy = 395.7972 kcal/mol (395.5616 without restraints) Performing minimization step: 3479. Total energy = 395.7742 kcal/mol (395.5386 without restraints) Performing minimization step: 3480. Total energy = 395.7512 kcal/mol (395.5156 without restraints) Performing minimization step: 3481. Total energy = 395.7285 kcal/mol (395.4929 without restraints) Performing minimization step: 3482. Total energy = 395.7055 kcal/mol (395.4700 without restraints) Performing minimization step: 3483. Total energy = 395.6825 kcal/mol (395.4470 without restraints) Performing minimization step: 3484. Total energy = 395.6598 kcal/mol (395.4243 without restraints) Performing minimization step: 3485. Total energy = 395.6370 kcal/mol (395.4016 without restraints) Performing minimization step: 3486. Total energy = 395.6140 kcal/mol (395.3785 without restraints) Performing minimization step: 3487. Total energy = 395.5911 kcal/mol (395.3557 without restraints) Performing minimization step: 3488. Total energy = 395.5682 kcal/mol (395.3328 without restraints) Performing minimization step: 3489. Total energy = 395.5453 kcal/mol (395.3100 without restraints) Performing minimization step: 3490. Total energy = 395.5225 kcal/mol (395.2872 without restraints) Performing minimization step: 3491. Total energy = 395.4996 kcal/mol (395.2644 without restraints) Performing minimization step: 3492. Total energy = 395.4771 kcal/mol (395.2418 without restraints) Performing minimization step: 3493. Total energy = 395.4543 kcal/mol (395.2191 without restraints) Performing minimization step: 3494. Total energy = 395.4316 kcal/mol (395.1964 without restraints) Performing minimization step: 3495. Total energy = 395.4088 kcal/mol (395.1737 without restraints) Performing minimization step: 3496. Total energy = 395.3861 kcal/mol (395.1510 without restraints) Performing minimization step: 3497. Total energy = 395.3634 kcal/mol (395.1283 without restraints) Performing minimization step: 3498. Total energy = 395.3408 kcal/mol (395.1058 without restraints) Performing minimization step: 3499. Total energy = 395.3183 kcal/mol (395.0833 without restraints) Performing minimization step: 3500. Total energy = 395.2959 kcal/mol (395.0609 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 395.2732 kcal/mol (395.0383 without restraints) Performing minimization step: 3502. Total energy = 395.2504 kcal/mol (395.0155 without restraints) Performing minimization step: 3503. Total energy = 395.2278 kcal/mol (394.9929 without restraints) Performing minimization step: 3504. Total energy = 395.2052 kcal/mol (394.9703 without restraints) Performing minimization step: 3505. Total energy = 395.1825 kcal/mol (394.9476 without restraints) Performing minimization step: 3506. Total energy = 395.1599 kcal/mol (394.9251 without restraints) Performing minimization step: 3507. Total energy = 395.1373 kcal/mol (394.9026 without restraints) Performing minimization step: 3508. Total energy = 395.1148 kcal/mol (394.8801 without restraints) Performing minimization step: 3509. Total energy = 395.0925 kcal/mol (394.8578 without restraints) Performing minimization step: 3510. Total energy = 395.0697 kcal/mol (394.8351 without restraints) Performing minimization step: 3511. Total energy = 395.0473 kcal/mol (394.8127 without restraints) Performing minimization step: 3512. Total energy = 395.0253 kcal/mol (394.7906 without restraints) Performing minimization step: 3513. Total energy = 395.0028 kcal/mol (394.7682 without restraints) Performing minimization step: 3514. Total energy = 394.9804 kcal/mol (394.7458 without restraints) Performing minimization step: 3515. Total energy = 394.9581 kcal/mol (394.7236 without restraints) Performing minimization step: 3516. Total energy = 394.9357 kcal/mol (394.7012 without restraints) Performing minimization step: 3517. Total energy = 394.9133 kcal/mol (394.6789 without restraints) Performing minimization step: 3518. Total energy = 394.8910 kcal/mol (394.6565 without restraints) Performing minimization step: 3519. Total energy = 394.8686 kcal/mol (394.6342 without restraints) Performing minimization step: 3520. Total energy = 394.8461 kcal/mol (394.6117 without restraints) Performing minimization step: 3521. Total energy = 394.8239 kcal/mol (394.5896 without restraints) Performing minimization step: 3522. Total energy = 394.8017 kcal/mol (394.5675 without restraints) Performing minimization step: 3523. Total energy = 394.7795 kcal/mol (394.5453 without restraints) Performing minimization step: 3524. Total energy = 394.7573 kcal/mol (394.5231 without restraints) Performing minimization step: 3525. Total energy = 394.7351 kcal/mol (394.5009 without restraints) Performing minimization step: 3526. Total energy = 394.7131 kcal/mol (394.4791 without restraints) Performing minimization step: 3527. Total energy = 394.6910 kcal/mol (394.4569 without restraints) Performing minimization step: 3528. Total energy = 394.6691 kcal/mol (394.4350 without restraints) Performing minimization step: 3529. Total energy = 394.6469 kcal/mol (394.4128 without restraints) Performing minimization step: 3530. Total energy = 394.6248 kcal/mol (394.3907 without restraints) Performing minimization step: 3531. Total energy = 394.6026 kcal/mol (394.3686 without restraints) Performing minimization step: 3532. Total energy = 394.5805 kcal/mol (394.3465 without restraints) Performing minimization step: 3533. Total energy = 394.5583 kcal/mol (394.3244 without restraints) Performing minimization step: 3534. Total energy = 394.5362 kcal/mol (394.3023 without restraints) Performing minimization step: 3535. Total energy = 394.5144 kcal/mol (394.2805 without restraints) Performing minimization step: 3536. Total energy = 394.4921 kcal/mol (394.2582 without restraints) Performing minimization step: 3537. Total energy = 394.4702 kcal/mol (394.2364 without restraints) Performing minimization step: 3538. Total energy = 394.4482 kcal/mol (394.2144 without restraints) Performing minimization step: 3539. Total energy = 394.4260 kcal/mol (394.1922 without restraints) Performing minimization step: 3540. Total energy = 394.4039 kcal/mol (394.1702 without restraints) Performing minimization step: 3541. Total energy = 394.3819 kcal/mol (394.1482 without restraints) Performing minimization step: 3542. Total energy = 394.3600 kcal/mol (394.1264 without restraints) Performing minimization step: 3543. Total energy = 394.3383 kcal/mol (394.1047 without restraints) Performing minimization step: 3544. Total energy = 394.3164 kcal/mol (394.0828 without restraints) Performing minimization step: 3545. Total energy = 394.2944 kcal/mol (394.0608 without restraints) Performing minimization step: 3546. Total energy = 394.2727 kcal/mol (394.0391 without restraints) Performing minimization step: 3547. Total energy = 394.2508 kcal/mol (394.0173 without restraints) Performing minimization step: 3548. Total energy = 394.2289 kcal/mol (393.9954 without restraints) Performing minimization step: 3549. Total energy = 394.2072 kcal/mol (393.9738 without restraints) Performing minimization step: 3550. Total energy = 394.1854 kcal/mol (393.9520 without restraints) Performing minimization step: 3551. Total energy = 394.1633 kcal/mol (393.9299 without restraints) Performing minimization step: 3552. Total energy = 394.1415 kcal/mol (393.9081 without restraints) Performing minimization step: 3553. Total energy = 394.1197 kcal/mol (393.8864 without restraints) Performing minimization step: 3554. Total energy = 394.0981 kcal/mol (393.8648 without restraints) Performing minimization step: 3555. Total energy = 394.0763 kcal/mol (393.8431 without restraints) Performing minimization step: 3556. Total energy = 394.0546 kcal/mol (393.8214 without restraints) Performing minimization step: 3557. Total energy = 394.0328 kcal/mol (393.7996 without restraints) Performing minimization step: 3558. Total energy = 394.0112 kcal/mol (393.7780 without restraints) Performing minimization step: 3559. Total energy = 393.9894 kcal/mol (393.7563 without restraints) Performing minimization step: 3560. Total energy = 393.9677 kcal/mol (393.7346 without restraints) Performing minimization step: 3561. Total energy = 393.9460 kcal/mol (393.7130 without restraints) Performing minimization step: 3562. Total energy = 393.9243 kcal/mol (393.6912 without restraints) Performing minimization step: 3563. Total energy = 393.9026 kcal/mol (393.6696 without restraints) Performing minimization step: 3564. Total energy = 393.8813 kcal/mol (393.6483 without restraints) Performing minimization step: 3565. Total energy = 393.8593 kcal/mol (393.6263 without restraints) Performing minimization step: 3566. Total energy = 393.8378 kcal/mol (393.6049 without restraints) Performing minimization step: 3567. Total energy = 393.8164 kcal/mol (393.5836 without restraints) Performing minimization step: 3568. Total energy = 393.7949 kcal/mol (393.5621 without restraints) Performing minimization step: 3569. Total energy = 393.7734 kcal/mol (393.5406 without restraints) Performing minimization step: 3570. Total energy = 393.7520 kcal/mol (393.5193 without restraints) Performing minimization step: 3571. Total energy = 393.7306 kcal/mol (393.4978 without restraints) Performing minimization step: 3572. Total energy = 393.7091 kcal/mol (393.4763 without restraints) Performing minimization step: 3573. Total energy = 393.6876 kcal/mol (393.4549 without restraints) Performing minimization step: 3574. Total energy = 393.6661 kcal/mol (393.4335 without restraints) Performing minimization step: 3575. Total energy = 393.6448 kcal/mol (393.4122 without restraints) Performing minimization step: 3576. Total energy = 393.6234 kcal/mol (393.3908 without restraints) Performing minimization step: 3577. Total energy = 393.6020 kcal/mol (393.3694 without restraints) Performing minimization step: 3578. Total energy = 393.5805 kcal/mol (393.3480 without restraints) Performing minimization step: 3579. Total energy = 393.5591 kcal/mol (393.3266 without restraints) Performing minimization step: 3580. Total energy = 393.5375 kcal/mol (393.3051 without restraints) Performing minimization step: 3581. Total energy = 393.5166 kcal/mol (393.2842 without restraints) Performing minimization step: 3582. Total energy = 393.4950 kcal/mol (393.2626 without restraints) Performing minimization step: 3583. Total energy = 393.4737 kcal/mol (393.2413 without restraints) Performing minimization step: 3584. Total energy = 393.4523 kcal/mol (393.2200 without restraints) Performing minimization step: 3585. Total energy = 393.4310 kcal/mol (393.1987 without restraints) Performing minimization step: 3586. Total energy = 393.4097 kcal/mol (393.1774 without restraints) Performing minimization step: 3587. Total energy = 393.3884 kcal/mol (393.1562 without restraints) Performing minimization step: 3588. Total energy = 393.3672 kcal/mol (393.1349 without restraints) Performing minimization step: 3589. Total energy = 393.3457 kcal/mol (393.1135 without restraints) Performing minimization step: 3590. Total energy = 393.3245 kcal/mol (393.0923 without restraints) Performing minimization step: 3591. Total energy = 393.3032 kcal/mol (393.0711 without restraints) Performing minimization step: 3592. Total energy = 393.2820 kcal/mol (393.0499 without restraints) Performing minimization step: 3593. Total energy = 393.2608 kcal/mol (393.0288 without restraints) Performing minimization step: 3594. Total energy = 393.2397 kcal/mol (393.0076 without restraints) Performing minimization step: 3595. Total energy = 393.2185 kcal/mol (392.9865 without restraints) Performing minimization step: 3596. Total energy = 393.1977 kcal/mol (392.9658 without restraints) Performing minimization step: 3597. Total energy = 393.1766 kcal/mol (392.9447 without restraints) Performing minimization step: 3598. Total energy = 393.1555 kcal/mol (392.9236 without restraints) Performing minimization step: 3599. Total energy = 393.1344 kcal/mol (392.9025 without restraints) Performing minimization step: 3600. Total energy = 393.1133 kcal/mol (392.8815 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 393.0920 kcal/mol (392.8599 without restraints) Performing minimization step: 3602. Total energy = 393.0709 kcal/mol (392.8391 without restraints) Performing minimization step: 3603. Total energy = 393.0498 kcal/mol (392.8180 without restraints) Performing minimization step: 3604. Total energy = 393.0286 kcal/mol (392.7969 without restraints) Performing minimization step: 3605. Total energy = 393.0076 kcal/mol (392.7759 without restraints) Performing minimization step: 3606. Total energy = 392.9866 kcal/mol (392.7549 without restraints) Performing minimization step: 3607. Total energy = 392.9656 kcal/mol (392.7340 without restraints) Performing minimization step: 3608. Total energy = 392.9445 kcal/mol (392.7128 without restraints) Performing minimization step: 3609. Total energy = 392.9235 kcal/mol (392.6919 without restraints) Performing minimization step: 3610. Total energy = 392.9025 kcal/mol (392.6709 without restraints) Performing minimization step: 3611. Total energy = 392.8818 kcal/mol (392.6502 without restraints) Performing minimization step: 3612. Total energy = 392.8609 kcal/mol (392.6294 without restraints) Performing minimization step: 3613. Total energy = 392.8400 kcal/mol (392.6085 without restraints) Performing minimization step: 3614. Total energy = 392.8191 kcal/mol (392.5877 without restraints) Performing minimization step: 3615. Total energy = 392.7983 kcal/mol (392.5669 without restraints) Performing minimization step: 3616. Total energy = 392.7774 kcal/mol (392.5460 without restraints) Performing minimization step: 3617. Total energy = 392.7566 kcal/mol (392.5252 without restraints) Performing minimization step: 3618. Total energy = 392.7358 kcal/mol (392.5044 without restraints) Performing minimization step: 3619. Total energy = 392.7149 kcal/mol (392.4836 without restraints) Performing minimization step: 3620. Total energy = 392.6936 kcal/mol (392.4624 without restraints) Performing minimization step: 3621. Total energy = 392.6728 kcal/mol (392.4416 without restraints) Performing minimization step: 3622. Total energy = 392.6521 kcal/mol (392.4209 without restraints) Performing minimization step: 3623. Total energy = 392.6313 kcal/mol (392.4002 without restraints) Performing minimization step: 3624. Total energy = 392.6106 kcal/mol (392.3795 without restraints) Performing minimization step: 3625. Total energy = 392.5899 kcal/mol (392.3588 without restraints) Performing minimization step: 3626. Total energy = 392.5692 kcal/mol (392.3382 without restraints) Performing minimization step: 3627. Total energy = 392.5485 kcal/mol (392.3175 without restraints) Performing minimization step: 3628. Total energy = 392.5278 kcal/mol (392.2968 without restraints) Performing minimization step: 3629. Total energy = 392.5071 kcal/mol (392.2762 without restraints) Performing minimization step: 3630. Total energy = 392.4865 kcal/mol (392.2556 without restraints) Performing minimization step: 3631. Total energy = 392.4659 kcal/mol (392.2350 without restraints) Performing minimization step: 3632. Total energy = 392.4451 kcal/mol (392.2142 without restraints) Performing minimization step: 3633. Total energy = 392.4245 kcal/mol (392.1936 without restraints) Performing minimization step: 3634. Total energy = 392.4039 kcal/mol (392.1731 without restraints) Performing minimization step: 3635. Total energy = 392.3837 kcal/mol (392.1530 without restraints) Performing minimization step: 3636. Total energy = 392.3632 kcal/mol (392.1324 without restraints) Performing minimization step: 3637. Total energy = 392.3427 kcal/mol (392.1119 without restraints) Performing minimization step: 3638. Total energy = 392.3221 kcal/mol (392.0914 without restraints) Performing minimization step: 3639. Total energy = 392.3016 kcal/mol (392.0709 without restraints) Performing minimization step: 3640. Total energy = 392.2811 kcal/mol (392.0504 without restraints) Performing minimization step: 3641. Total energy = 392.2606 kcal/mol (392.0300 without restraints) Performing minimization step: 3642. Total energy = 392.2401 kcal/mol (392.0096 without restraints) Performing minimization step: 3643. Total energy = 392.2197 kcal/mol (391.9891 without restraints) Performing minimization step: 3644. Total energy = 392.1992 kcal/mol (391.9687 without restraints) Performing minimization step: 3645. Total energy = 392.1785 kcal/mol (391.9480 without restraints) Performing minimization step: 3646. Total energy = 392.1581 kcal/mol (391.9277 without restraints) Performing minimization step: 3647. Total energy = 392.1378 kcal/mol (391.9073 without restraints) Performing minimization step: 3648. Total energy = 392.1174 kcal/mol (391.8870 without restraints) Performing minimization step: 3649. Total energy = 392.0970 kcal/mol (391.8666 without restraints) Performing minimization step: 3650. Total energy = 392.0764 kcal/mol (391.8460 without restraints) Performing minimization step: 3651. Total energy = 392.0562 kcal/mol (391.8259 without restraints) Performing minimization step: 3652. Total energy = 392.0359 kcal/mol (391.8056 without restraints) Performing minimization step: 3653. Total energy = 392.0155 kcal/mol (391.7853 without restraints) Performing minimization step: 3654. Total energy = 391.9952 kcal/mol (391.7650 without restraints) Performing minimization step: 3655. Total energy = 391.9749 kcal/mol (391.7447 without restraints) Performing minimization step: 3656. Total energy = 391.9546 kcal/mol (391.7245 without restraints) Performing minimization step: 3657. Total energy = 391.9344 kcal/mol (391.7043 without restraints) Performing minimization step: 3658. Total energy = 391.9141 kcal/mol (391.6840 without restraints) Performing minimization step: 3659. Total energy = 391.8939 kcal/mol (391.6638 without restraints) Performing minimization step: 3660. Total energy = 391.8737 kcal/mol (391.6436 without restraints) Performing minimization step: 3661. Total energy = 391.8534 kcal/mol (391.6234 without restraints) Performing minimization step: 3662. Total energy = 391.8336 kcal/mol (391.6036 without restraints) Performing minimization step: 3663. Total energy = 391.8136 kcal/mol (391.5837 without restraints) Performing minimization step: 3664. Total energy = 391.7934 kcal/mol (391.5635 without restraints) Performing minimization step: 3665. Total energy = 391.7733 kcal/mol (391.5434 without restraints) Performing minimization step: 3666. Total energy = 391.7531 kcal/mol (391.5232 without restraints) Performing minimization step: 3667. Total energy = 391.7330 kcal/mol (391.5031 without restraints) Performing minimization step: 3668. Total energy = 391.7130 kcal/mol (391.4832 without restraints) Performing minimization step: 3669. Total energy = 391.6930 kcal/mol (391.4632 without restraints) Performing minimization step: 3670. Total energy = 391.6729 kcal/mol (391.4432 without restraints) Performing minimization step: 3671. Total energy = 391.6528 kcal/mol (391.4231 without restraints) Performing minimization step: 3672. Total energy = 391.6327 kcal/mol (391.4030 without restraints) Performing minimization step: 3673. Total energy = 391.6128 kcal/mol (391.3832 without restraints) Performing minimization step: 3674. Total energy = 391.5928 kcal/mol (391.3632 without restraints) Performing minimization step: 3675. Total energy = 391.5728 kcal/mol (391.3432 without restraints) Performing minimization step: 3676. Total energy = 391.5528 kcal/mol (391.3232 without restraints) Performing minimization step: 3677. Total energy = 391.5330 kcal/mol (391.3034 without restraints) Performing minimization step: 3678. Total energy = 391.5130 kcal/mol (391.2835 without restraints) Performing minimization step: 3679. Total energy = 391.4930 kcal/mol (391.2635 without restraints) Performing minimization step: 3680. Total energy = 391.4730 kcal/mol (391.2436 without restraints) Performing minimization step: 3681. Total energy = 391.4529 kcal/mol (391.2235 without restraints) Performing minimization step: 3682. Total energy = 391.4331 kcal/mol (391.2037 without restraints) Performing minimization step: 3683. Total energy = 391.4132 kcal/mol (391.1838 without restraints) Performing minimization step: 3684. Total energy = 391.3937 kcal/mol (391.1643 without restraints) Performing minimization step: 3685. Total energy = 391.3738 kcal/mol (391.1445 without restraints) Performing minimization step: 3686. Total energy = 391.3542 kcal/mol (391.1250 without restraints) Performing minimization step: 3687. Total energy = 391.3340 kcal/mol (391.1049 without restraints) Performing minimization step: 3688. Total energy = 391.3143 kcal/mol (391.0851 without restraints) Performing minimization step: 3689. Total energy = 391.2944 kcal/mol (391.0653 without restraints) Performing minimization step: 3690. Total energy = 391.2746 kcal/mol (391.0455 without restraints) Performing minimization step: 3691. Total energy = 391.2548 kcal/mol (391.0257 without restraints) Performing minimization step: 3692. Total energy = 391.2350 kcal/mol (391.0059 without restraints) Performing minimization step: 3693. Total energy = 391.2152 kcal/mol (390.9862 without restraints) Performing minimization step: 3694. Total energy = 391.1955 kcal/mol (390.9666 without restraints) Performing minimization step: 3695. Total energy = 391.1759 kcal/mol (390.9469 without restraints) Performing minimization step: 3696. Total energy = 391.1561 kcal/mol (390.9272 without restraints) Performing minimization step: 3697. Total energy = 391.1364 kcal/mol (390.9074 without restraints) Performing minimization step: 3698. Total energy = 391.1167 kcal/mol (390.8878 without restraints) Performing minimization step: 3699. Total energy = 391.0968 kcal/mol (390.8680 without restraints) Performing minimization step: 3700. Total energy = 391.0773 kcal/mol (390.8485 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 391.0576 kcal/mol (390.8288 without restraints) Performing minimization step: 3702. Total energy = 391.0380 kcal/mol (390.8093 without restraints) Performing minimization step: 3703. Total energy = 391.0184 kcal/mol (390.7896 without restraints) Performing minimization step: 3704. Total energy = 390.9987 kcal/mol (390.7699 without restraints) Performing minimization step: 3705. Total energy = 390.9789 kcal/mol (390.7501 without restraints) Performing minimization step: 3706. Total energy = 390.9592 kcal/mol (390.7305 without restraints) Performing minimization step: 3707. Total energy = 390.9400 kcal/mol (390.7114 without restraints) Performing minimization step: 3708. Total energy = 390.9202 kcal/mol (390.6916 without restraints) Performing minimization step: 3709. Total energy = 390.9006 kcal/mol (390.6720 without restraints) Performing minimization step: 3710. Total energy = 390.8812 kcal/mol (390.6527 without restraints) Performing minimization step: 3711. Total energy = 390.8617 kcal/mol (390.6331 without restraints) Performing minimization step: 3712. Total energy = 390.8423 kcal/mol (390.6138 without restraints) Performing minimization step: 3713. Total energy = 390.8228 kcal/mol (390.5943 without restraints) Performing minimization step: 3714. Total energy = 390.8033 kcal/mol (390.5748 without restraints) Performing minimization step: 3715. Total energy = 390.7838 kcal/mol (390.5554 without restraints) Performing minimization step: 3716. Total energy = 390.7645 kcal/mol (390.5362 without restraints) Performing minimization step: 3717. Total energy = 390.7456 kcal/mol (390.5172 without restraints) Performing minimization step: 3718. Total energy = 390.7263 kcal/mol (390.4980 without restraints) Performing minimization step: 3719. Total energy = 390.7069 kcal/mol (390.4786 without restraints) Performing minimization step: 3720. Total energy = 390.6875 kcal/mol (390.4592 without restraints) Performing minimization step: 3721. Total energy = 390.6680 kcal/mol (390.4398 without restraints) Performing minimization step: 3722. Total energy = 390.6486 kcal/mol (390.4204 without restraints) Performing minimization step: 3723. Total energy = 390.6294 kcal/mol (390.4012 without restraints) Performing minimization step: 3724. Total energy = 390.6100 kcal/mol (390.3819 without restraints) Performing minimization step: 3725. Total energy = 390.5907 kcal/mol (390.3626 without restraints) Performing minimization step: 3726. Total energy = 390.5713 kcal/mol (390.3432 without restraints) Performing minimization step: 3727. Total energy = 390.5518 kcal/mol (390.3237 without restraints) Performing minimization step: 3728. Total energy = 390.5324 kcal/mol (390.3044 without restraints) Performing minimization step: 3729. Total energy = 390.5134 kcal/mol (390.2854 without restraints) Performing minimization step: 3730. Total energy = 390.4941 kcal/mol (390.2661 without restraints) Performing minimization step: 3731. Total energy = 390.4748 kcal/mol (390.2468 without restraints) Performing minimization step: 3732. Total energy = 390.4557 kcal/mol (390.2278 without restraints) Performing minimization step: 3733. Total energy = 390.4368 kcal/mol (390.2089 without restraints) Performing minimization step: 3734. Total energy = 390.4177 kcal/mol (390.1899 without restraints) Performing minimization step: 3735. Total energy = 390.3989 kcal/mol (390.1710 without restraints) Performing minimization step: 3736. Total energy = 390.3795 kcal/mol (390.1516 without restraints) Performing minimization step: 3737. Total energy = 390.3602 kcal/mol (390.1324 without restraints) Performing minimization step: 3738. Total energy = 390.3409 kcal/mol (390.1132 without restraints) Performing minimization step: 3739. Total energy = 390.3216 kcal/mol (390.0938 without restraints) Performing minimization step: 3740. Total energy = 390.3024 kcal/mol (390.0747 without restraints) Performing minimization step: 3741. Total energy = 390.2832 kcal/mol (390.0555 without restraints) Performing minimization step: 3742. Total energy = 390.2641 kcal/mol (390.0364 without restraints) Performing minimization step: 3743. Total energy = 390.2449 kcal/mol (390.0173 without restraints) Performing minimization step: 3744. Total energy = 390.2258 kcal/mol (389.9982 without restraints) Performing minimization step: 3745. Total energy = 390.2067 kcal/mol (389.9791 without restraints) Performing minimization step: 3746. Total energy = 390.1873 kcal/mol (389.9598 without restraints) Performing minimization step: 3747. Total energy = 390.1682 kcal/mol (389.9407 without restraints) Performing minimization step: 3748. Total energy = 390.1491 kcal/mol (389.9217 without restraints) Performing minimization step: 3749. Total energy = 390.1299 kcal/mol (389.9024 without restraints) Performing minimization step: 3750. Total energy = 390.1108 kcal/mol (389.8834 without restraints) Performing minimization step: 3751. Total energy = 390.0918 kcal/mol (389.8644 without restraints) Performing minimization step: 3752. Total energy = 390.0728 kcal/mol (389.8454 without restraints) Performing minimization step: 3753. Total energy = 390.0537 kcal/mol (389.8263 without restraints) Performing minimization step: 3754. Total energy = 390.0347 kcal/mol (389.8074 without restraints) Performing minimization step: 3755. Total energy = 390.0157 kcal/mol (389.7884 without restraints) Performing minimization step: 3756. Total energy = 389.9967 kcal/mol (389.7694 without restraints) Performing minimization step: 3757. Total energy = 389.9777 kcal/mol (389.7505 without restraints) Performing minimization step: 3758. Total energy = 389.9587 kcal/mol (389.7315 without restraints) Performing minimization step: 3759. Total energy = 389.9398 kcal/mol (389.7127 without restraints) Performing minimization step: 3760. Total energy = 389.9208 kcal/mol (389.6937 without restraints) Performing minimization step: 3761. Total energy = 389.9019 kcal/mol (389.6747 without restraints) Performing minimization step: 3762. Total energy = 389.8829 kcal/mol (389.6559 without restraints) Performing minimization step: 3763. Total energy = 389.8643 kcal/mol (389.6372 without restraints) Performing minimization step: 3764. Total energy = 389.8454 kcal/mol (389.6184 without restraints) Performing minimization step: 3765. Total energy = 389.8265 kcal/mol (389.5995 without restraints) Performing minimization step: 3766. Total energy = 389.8078 kcal/mol (389.5810 without restraints) Performing minimization step: 3767. Total energy = 389.7891 kcal/mol (389.5622 without restraints) Performing minimization step: 3768. Total energy = 389.7702 kcal/mol (389.5431 without restraints) Performing minimization step: 3769. Total energy = 389.7512 kcal/mol (389.5243 without restraints) Performing minimization step: 3770. Total energy = 389.7324 kcal/mol (389.5055 without restraints) Performing minimization step: 3771. Total energy = 389.7135 kcal/mol (389.4865 without restraints) Performing minimization step: 3772. Total energy = 389.6946 kcal/mol (389.4678 without restraints) Performing minimization step: 3773. Total energy = 389.6758 kcal/mol (389.4490 without restraints) Performing minimization step: 3774. Total energy = 389.6569 kcal/mol (389.4300 without restraints) Performing minimization step: 3775. Total energy = 389.6380 kcal/mol (389.4113 without restraints) Performing minimization step: 3776. Total energy = 389.6192 kcal/mol (389.3925 without restraints) Performing minimization step: 3777. Total energy = 389.6005 kcal/mol (389.3738 without restraints) Performing minimization step: 3778. Total energy = 389.5824 kcal/mol (389.3557 without restraints) Performing minimization step: 3779. Total energy = 389.5637 kcal/mol (389.3371 without restraints) Performing minimization step: 3780. Total energy = 389.5450 kcal/mol (389.3184 without restraints) Performing minimization step: 3781. Total energy = 389.5261 kcal/mol (389.2995 without restraints) Performing minimization step: 3782. Total energy = 389.5074 kcal/mol (389.2809 without restraints) Performing minimization step: 3783. Total energy = 389.4888 kcal/mol (389.2623 without restraints) Performing minimization step: 3784. Total energy = 389.4705 kcal/mol (389.2439 without restraints) Performing minimization step: 3785. Total energy = 389.4518 kcal/mol (389.2253 without restraints) Performing minimization step: 3786. Total energy = 389.4331 kcal/mol (389.2067 without restraints) Performing minimization step: 3787. Total energy = 389.4145 kcal/mol (389.1881 without restraints) Performing minimization step: 3788. Total energy = 389.3957 kcal/mol (389.1693 without restraints) Performing minimization step: 3789. Total energy = 389.3768 kcal/mol (389.1505 without restraints) Performing minimization step: 3790. Total energy = 389.3581 kcal/mol (389.1318 without restraints) Performing minimization step: 3791. Total energy = 389.3395 kcal/mol (389.1132 without restraints) Performing minimization step: 3792. Total energy = 389.3209 kcal/mol (389.0947 without restraints) Performing minimization step: 3793. Total energy = 389.3024 kcal/mol (389.0761 without restraints) Performing minimization step: 3794. Total energy = 389.2838 kcal/mol (389.0576 without restraints) Performing minimization step: 3795. Total energy = 389.2653 kcal/mol (389.0391 without restraints) Performing minimization step: 3796. Total energy = 389.2468 kcal/mol (389.0206 without restraints) Performing minimization step: 3797. Total energy = 389.2283 kcal/mol (389.0022 without restraints) Performing minimization step: 3798. Total energy = 389.2100 kcal/mol (388.9839 without restraints) Performing minimization step: 3799. Total energy = 389.1913 kcal/mol (388.9653 without restraints) Performing minimization step: 3800. Total energy = 389.1729 kcal/mol (388.9468 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 389.1548 kcal/mol (388.9288 without restraints) Performing minimization step: 3802. Total energy = 389.1360 kcal/mol (388.9100 without restraints) Performing minimization step: 3803. Total energy = 389.1177 kcal/mol (388.8918 without restraints) Performing minimization step: 3804. Total energy = 389.0991 kcal/mol (388.8731 without restraints) Performing minimization step: 3805. Total energy = 389.0806 kcal/mol (388.8547 without restraints) Performing minimization step: 3806. Total energy = 389.0626 kcal/mol (388.8368 without restraints) Performing minimization step: 3807. Total energy = 389.0443 kcal/mol (388.8185 without restraints) Performing minimization step: 3808. Total energy = 389.0259 kcal/mol (388.8001 without restraints) Performing minimization step: 3809. Total energy = 389.0073 kcal/mol (388.7815 without restraints) Performing minimization step: 3810. Total energy = 388.9890 kcal/mol (388.7632 without restraints) Performing minimization step: 3811. Total energy = 388.9706 kcal/mol (388.7449 without restraints) Performing minimization step: 3812. Total energy = 388.9523 kcal/mol (388.7266 without restraints) Performing minimization step: 3813. Total energy = 388.9339 kcal/mol (388.7082 without restraints) Performing minimization step: 3814. Total energy = 388.9157 kcal/mol (388.6901 without restraints) Performing minimization step: 3815. Total energy = 388.8974 kcal/mol (388.6718 without restraints) Performing minimization step: 3816. Total energy = 388.8792 kcal/mol (388.6536 without restraints) Performing minimization step: 3817. Total energy = 388.8606 kcal/mol (388.6351 without restraints) Performing minimization step: 3818. Total energy = 388.8424 kcal/mol (388.6168 without restraints) Performing minimization step: 3819. Total energy = 388.8241 kcal/mol (388.5986 without restraints) Performing minimization step: 3820. Total energy = 388.8056 kcal/mol (388.5800 without restraints) Performing minimization step: 3821. Total energy = 388.7872 kcal/mol (388.5618 without restraints) Performing minimization step: 3822. Total energy = 388.7690 kcal/mol (388.5436 without restraints) Performing minimization step: 3823. Total energy = 388.7507 kcal/mol (388.5253 without restraints) Performing minimization step: 3824. Total energy = 388.7325 kcal/mol (388.5072 without restraints) Performing minimization step: 3825. Total energy = 388.7141 kcal/mol (388.4887 without restraints) Performing minimization step: 3826. Total energy = 388.6959 kcal/mol (388.4706 without restraints) Performing minimization step: 3827. Total energy = 388.6777 kcal/mol (388.4524 without restraints) Performing minimization step: 3828. Total energy = 388.6596 kcal/mol (388.4343 without restraints) Performing minimization step: 3829. Total energy = 388.6414 kcal/mol (388.4162 without restraints) Performing minimization step: 3830. Total energy = 388.6233 kcal/mol (388.3981 without restraints) Performing minimization step: 3831. Total energy = 388.6054 kcal/mol (388.3802 without restraints) Performing minimization step: 3832. Total energy = 388.5877 kcal/mol (388.3625 without restraints) Performing minimization step: 3833. Total energy = 388.5695 kcal/mol (388.3444 without restraints) Performing minimization step: 3834. Total energy = 388.5515 kcal/mol (388.3265 without restraints) Performing minimization step: 3835. Total energy = 388.5337 kcal/mol (388.3089 without restraints) Performing minimization step: 3836. Total energy = 388.5159 kcal/mol (388.2908 without restraints) Performing minimization step: 3837. Total energy = 388.4978 kcal/mol (388.2728 without restraints) Performing minimization step: 3838. Total energy = 388.4797 kcal/mol (388.2547 without restraints) Performing minimization step: 3839. Total energy = 388.4617 kcal/mol (388.2368 without restraints) Performing minimization step: 3840. Total energy = 388.4438 kcal/mol (388.2188 without restraints) Performing minimization step: 3841. Total energy = 388.4257 kcal/mol (388.2008 without restraints) Performing minimization step: 3842. Total energy = 388.4075 kcal/mol (388.1826 without restraints) Performing minimization step: 3843. Total energy = 388.3895 kcal/mol (388.1646 without restraints) Performing minimization step: 3844. Total energy = 388.3713 kcal/mol (388.1464 without restraints) Performing minimization step: 3845. Total energy = 388.3533 kcal/mol (388.1285 without restraints) Performing minimization step: 3846. Total energy = 388.3353 kcal/mol (388.1105 without restraints) Performing minimization step: 3847. Total energy = 388.3173 kcal/mol (388.0924 without restraints) Performing minimization step: 3848. Total energy = 388.2992 kcal/mol (388.0745 without restraints) Performing minimization step: 3849. Total energy = 388.2813 kcal/mol (388.0566 without restraints) Performing minimization step: 3850. Total energy = 388.2634 kcal/mol (388.0387 without restraints) Performing minimization step: 3851. Total energy = 388.2455 kcal/mol (388.0208 without restraints) Performing minimization step: 3852. Total energy = 388.2276 kcal/mol (388.0029 without restraints) Performing minimization step: 3853. Total energy = 388.2097 kcal/mol (387.9851 without restraints) Performing minimization step: 3854. Total energy = 388.1918 kcal/mol (387.9673 without restraints) Performing minimization step: 3855. Total energy = 388.1739 kcal/mol (387.9492 without restraints) Performing minimization step: 3856. Total energy = 388.1559 kcal/mol (387.9314 without restraints) Performing minimization step: 3857. Total energy = 388.1381 kcal/mol (387.9135 without restraints) Performing minimization step: 3858. Total energy = 388.1202 kcal/mol (387.8957 without restraints) Performing minimization step: 3859. Total energy = 388.1024 kcal/mol (387.8779 without restraints) Performing minimization step: 3860. Total energy = 388.0848 kcal/mol (387.8603 without restraints) Performing minimization step: 3861. Total energy = 388.0671 kcal/mol (387.8427 without restraints) Performing minimization step: 3862. Total energy = 388.0494 kcal/mol (387.8250 without restraints) Performing minimization step: 3863. Total energy = 388.0316 kcal/mol (387.8072 without restraints) Performing minimization step: 3864. Total energy = 388.0136 kcal/mol (387.7893 without restraints) Performing minimization step: 3865. Total energy = 387.9959 kcal/mol (387.7716 without restraints) Performing minimization step: 3866. Total energy = 387.9781 kcal/mol (387.7539 without restraints) Performing minimization step: 3867. Total energy = 387.9604 kcal/mol (387.7362 without restraints) Performing minimization step: 3868. Total energy = 387.9427 kcal/mol (387.7185 without restraints) Performing minimization step: 3869. Total energy = 387.9250 kcal/mol (387.7008 without restraints) Performing minimization step: 3870. Total energy = 387.9074 kcal/mol (387.6833 without restraints) Performing minimization step: 3871. Total energy = 387.8897 kcal/mol (387.6656 without restraints) Performing minimization step: 3872. Total energy = 387.8720 kcal/mol (387.6479 without restraints) Performing minimization step: 3873. Total energy = 387.8544 kcal/mol (387.6304 without restraints) Performing minimization step: 3874. Total energy = 387.8371 kcal/mol (387.6130 without restraints) Performing minimization step: 3875. Total energy = 387.8194 kcal/mol (387.5953 without restraints) Performing minimization step: 3876. Total energy = 387.8019 kcal/mol (387.5779 without restraints) Performing minimization step: 3877. Total energy = 387.7843 kcal/mol (387.5603 without restraints) Performing minimization step: 3878. Total energy = 387.7665 kcal/mol (387.5424 without restraints) Performing minimization step: 3879. Total energy = 387.7489 kcal/mol (387.5250 without restraints) Performing minimization step: 3880. Total energy = 387.7316 kcal/mol (387.5077 without restraints) Performing minimization step: 3881. Total energy = 387.7140 kcal/mol (387.4901 without restraints) Performing minimization step: 3882. Total energy = 387.6964 kcal/mol (387.4725 without restraints) Performing minimization step: 3883. Total energy = 387.6789 kcal/mol (387.4550 without restraints) Performing minimization step: 3884. Total energy = 387.6615 kcal/mol (387.4377 without restraints) Performing minimization step: 3885. Total energy = 387.6438 kcal/mol (387.4200 without restraints) Performing minimization step: 3886. Total energy = 387.6262 kcal/mol (387.4025 without restraints) Performing minimization step: 3887. Total energy = 387.6087 kcal/mol (387.3849 without restraints) Performing minimization step: 3888. Total energy = 387.5912 kcal/mol (387.3674 without restraints) Performing minimization step: 3889. Total energy = 387.5737 kcal/mol (387.3499 without restraints) Performing minimization step: 3890. Total energy = 387.5562 kcal/mol (387.3325 without restraints) Performing minimization step: 3891. Total energy = 387.5386 kcal/mol (387.3150 without restraints) Performing minimization step: 3892. Total energy = 387.5215 kcal/mol (387.2979 without restraints) Performing minimization step: 3893. Total energy = 387.5036 kcal/mol (387.2798 without restraints) Performing minimization step: 3894. Total energy = 387.4857 kcal/mol (387.2621 without restraints) Performing minimization step: 3895. Total energy = 387.4683 kcal/mol (387.2447 without restraints) Performing minimization step: 3896. Total energy = 387.4508 kcal/mol (387.2273 without restraints) Performing minimization step: 3897. Total energy = 387.4336 kcal/mol (387.2100 without restraints) Performing minimization step: 3898. Total energy = 387.4161 kcal/mol (387.1926 without restraints) Performing minimization step: 3899. Total energy = 387.3987 kcal/mol (387.1752 without restraints) Performing minimization step: 3900. Total energy = 387.3813 kcal/mol (387.1578 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 387.3640 kcal/mol (387.1405 without restraints) Performing minimization step: 3902. Total energy = 387.3467 kcal/mol (387.1233 without restraints) Performing minimization step: 3903. Total energy = 387.3299 kcal/mol (387.1066 without restraints) Performing minimization step: 3904. Total energy = 387.3129 kcal/mol (387.0897 without restraints) Performing minimization step: 3905. Total energy = 387.2957 kcal/mol (387.0724 without restraints) Performing minimization step: 3906. Total energy = 387.2783 kcal/mol (387.0550 without restraints) Performing minimization step: 3907. Total energy = 387.2610 kcal/mol (387.0377 without restraints) Performing minimization step: 3908. Total energy = 387.2436 kcal/mol (387.0204 without restraints) Performing minimization step: 3909. Total energy = 387.2263 kcal/mol (387.0031 without restraints) Performing minimization step: 3910. Total energy = 387.2090 kcal/mol (386.9858 without restraints) Performing minimization step: 3911. Total energy = 387.1915 kcal/mol (386.9684 without restraints) Performing minimization step: 3912. Total energy = 387.1743 kcal/mol (386.9511 without restraints) Performing minimization step: 3913. Total energy = 387.1571 kcal/mol (386.9340 without restraints) Performing minimization step: 3914. Total energy = 387.1399 kcal/mol (386.9168 without restraints) Performing minimization step: 3915. Total energy = 387.1226 kcal/mol (386.8995 without restraints) Performing minimization step: 3916. Total energy = 387.1060 kcal/mol (386.8829 without restraints) Performing minimization step: 3917. Total energy = 387.0887 kcal/mol (386.8657 without restraints) Performing minimization step: 3918. Total energy = 387.0715 kcal/mol (386.8484 without restraints) Performing minimization step: 3919. Total energy = 387.0544 kcal/mol (386.8314 without restraints) Performing minimization step: 3920. Total energy = 387.0372 kcal/mol (386.8142 without restraints) Performing minimization step: 3921. Total energy = 387.0200 kcal/mol (386.7971 without restraints) Performing minimization step: 3922. Total energy = 387.0029 kcal/mol (386.7799 without restraints) Performing minimization step: 3923. Total energy = 386.9857 kcal/mol (386.7628 without restraints) Performing minimization step: 3924. Total energy = 386.9685 kcal/mol (386.7456 without restraints) Performing minimization step: 3925. Total energy = 386.9509 kcal/mol (386.7281 without restraints) Performing minimization step: 3926. Total energy = 386.9338 kcal/mol (386.7110 without restraints) Performing minimization step: 3927. Total energy = 386.9167 kcal/mol (386.6939 without restraints) Performing minimization step: 3928. Total energy = 386.8995 kcal/mol (386.6767 without restraints) Performing minimization step: 3929. Total energy = 386.8825 kcal/mol (386.6598 without restraints) Performing minimization step: 3930. Total energy = 386.8657 kcal/mol (386.6429 without restraints) Performing minimization step: 3931. Total energy = 386.8486 kcal/mol (386.6259 without restraints) Performing minimization step: 3932. Total energy = 386.8315 kcal/mol (386.6088 without restraints) Performing minimization step: 3933. Total energy = 386.8144 kcal/mol (386.5917 without restraints) Performing minimization step: 3934. Total energy = 386.7973 kcal/mol (386.5747 without restraints) Performing minimization step: 3935. Total energy = 386.7802 kcal/mol (386.5577 without restraints) Performing minimization step: 3936. Total energy = 386.7628 kcal/mol (386.5403 without restraints) Performing minimization step: 3937. Total energy = 386.7458 kcal/mol (386.5232 without restraints) Performing minimization step: 3938. Total energy = 386.7288 kcal/mol (386.5062 without restraints) Performing minimization step: 3939. Total energy = 386.7117 kcal/mol (386.4892 without restraints) Performing minimization step: 3940. Total energy = 386.6950 kcal/mol (386.4725 without restraints) Performing minimization step: 3941. Total energy = 386.6780 kcal/mol (386.4555 without restraints) Performing minimization step: 3942. Total energy = 386.6610 kcal/mol (386.4385 without restraints) Performing minimization step: 3943. Total energy = 386.6440 kcal/mol (386.4216 without restraints) Performing minimization step: 3944. Total energy = 386.6270 kcal/mol (386.4046 without restraints) Performing minimization step: 3945. Total energy = 386.6099 kcal/mol (386.3875 without restraints) Performing minimization step: 3946. Total energy = 386.5932 kcal/mol (386.3708 without restraints) Performing minimization step: 3947. Total energy = 386.5762 kcal/mol (386.3539 without restraints) Performing minimization step: 3948. Total energy = 386.5593 kcal/mol (386.3370 without restraints) Performing minimization step: 3949. Total energy = 386.5423 kcal/mol (386.3201 without restraints) Performing minimization step: 3950. Total energy = 386.5257 kcal/mol (386.3034 without restraints) Performing minimization step: 3951. Total energy = 386.5087 kcal/mol (386.2865 without restraints) Performing minimization step: 3952. Total energy = 386.4917 kcal/mol (386.2695 without restraints) Performing minimization step: 3953. Total energy = 386.4749 kcal/mol (386.2527 without restraints) Performing minimization step: 3954. Total energy = 386.4580 kcal/mol (386.2358 without restraints) Performing minimization step: 3955. Total energy = 386.4411 kcal/mol (386.2190 without restraints) Performing minimization step: 3956. Total energy = 386.4243 kcal/mol (386.2021 without restraints) Performing minimization step: 3957. Total energy = 386.4074 kcal/mol (386.1853 without restraints) Performing minimization step: 3958. Total energy = 386.3906 kcal/mol (386.1685 without restraints) Performing minimization step: 3959. Total energy = 386.3737 kcal/mol (386.1517 without restraints) Performing minimization step: 3960. Total energy = 386.3569 kcal/mol (386.1349 without restraints) Performing minimization step: 3961. Total energy = 386.3398 kcal/mol (386.1178 without restraints) Performing minimization step: 3962. Total energy = 386.3232 kcal/mol (386.1012 without restraints) Performing minimization step: 3963. Total energy = 386.3064 kcal/mol (386.0844 without restraints) Performing minimization step: 3964. Total energy = 386.2901 kcal/mol (386.0681 without restraints) Performing minimization step: 3965. Total energy = 386.2733 kcal/mol (386.0514 without restraints) Performing minimization step: 3966. Total energy = 386.2565 kcal/mol (386.0346 without restraints) Performing minimization step: 3967. Total energy = 386.2398 kcal/mol (386.0179 without restraints) Performing minimization step: 3968. Total energy = 386.2233 kcal/mol (386.0015 without restraints) Performing minimization step: 3969. Total energy = 386.2068 kcal/mol (385.9849 without restraints) Performing minimization step: 3970. Total energy = 386.1898 kcal/mol (385.9680 without restraints) Performing minimization step: 3971. Total energy = 386.1732 kcal/mol (385.9515 without restraints) Performing minimization step: 3972. Total energy = 386.1566 kcal/mol (385.9348 without restraints) Performing minimization step: 3973. Total energy = 386.1399 kcal/mol (385.9181 without restraints) Performing minimization step: 3974. Total energy = 386.1232 kcal/mol (385.9015 without restraints) Performing minimization step: 3975. Total energy = 386.1065 kcal/mol (385.8848 without restraints) Performing minimization step: 3976. Total energy = 386.0901 kcal/mol (385.8684 without restraints) Performing minimization step: 3977. Total energy = 386.0737 kcal/mol (385.8520 without restraints) Performing minimization step: 3978. Total energy = 386.0572 kcal/mol (385.8356 without restraints) Performing minimization step: 3979. Total energy = 386.0406 kcal/mol (385.8189 without restraints) Performing minimization step: 3980. Total energy = 386.0239 kcal/mol (385.8023 without restraints) Performing minimization step: 3981. Total energy = 386.0071 kcal/mol (385.7855 without restraints) Performing minimization step: 3982. Total energy = 385.9904 kcal/mol (385.7689 without restraints) Performing minimization step: 3983. Total energy = 385.9739 kcal/mol (385.7523 without restraints) Performing minimization step: 3984. Total energy = 385.9573 kcal/mol (385.7358 without restraints) Performing minimization step: 3985. Total energy = 385.9407 kcal/mol (385.7192 without restraints) Performing minimization step: 3986. Total energy = 385.9239 kcal/mol (385.7024 without restraints) Performing minimization step: 3987. Total energy = 385.9074 kcal/mol (385.6859 without restraints) Performing minimization step: 3988. Total energy = 385.8912 kcal/mol (385.6698 without restraints) Performing minimization step: 3989. Total energy = 385.8746 kcal/mol (385.6532 without restraints) Performing minimization step: 3990. Total energy = 385.8585 kcal/mol (385.6371 without restraints) Performing minimization step: 3991. Total energy = 385.8419 kcal/mol (385.6206 without restraints) Performing minimization step: 3992. Total energy = 385.8254 kcal/mol (385.6041 without restraints) Performing minimization step: 3993. Total energy = 385.8089 kcal/mol (385.5876 without restraints) Performing minimization step: 3994. Total energy = 385.7924 kcal/mol (385.5711 without restraints) Performing minimization step: 3995. Total energy = 385.7759 kcal/mol (385.5546 without restraints) Performing minimization step: 3996. Total energy = 385.7594 kcal/mol (385.5381 without restraints) Performing minimization step: 3997. Total energy = 385.7429 kcal/mol (385.5216 without restraints) Performing minimization step: 3998. Total energy = 385.7264 kcal/mol (385.5053 without restraints) Performing minimization step: 3999. Total energy = 385.7100 kcal/mol (385.4888 without restraints) Performing minimization step: 4000. Total energy = 385.6936 kcal/mol (385.4724 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 385.6771 kcal/mol (385.4560 without restraints) Performing minimization step: 4002. Total energy = 385.6605 kcal/mol (385.4394 without restraints) Performing minimization step: 4003. Total energy = 385.6440 kcal/mol (385.4230 without restraints) Performing minimization step: 4004. Total energy = 385.6276 kcal/mol (385.4065 without restraints) Performing minimization step: 4005. Total energy = 385.6112 kcal/mol (385.3902 without restraints) Performing minimization step: 4006. Total energy = 385.5948 kcal/mol (385.3738 without restraints) Performing minimization step: 4007. Total energy = 385.5784 kcal/mol (385.3574 without restraints) Performing minimization step: 4008. Total energy = 385.5620 kcal/mol (385.3411 without restraints) Performing minimization step: 4009. Total energy = 385.5457 kcal/mol (385.3247 without restraints) Performing minimization step: 4010. Total energy = 385.5293 kcal/mol (385.3083 without restraints) Performing minimization step: 4011. Total energy = 385.5127 kcal/mol (385.2918 without restraints) Performing minimization step: 4012. Total energy = 385.4964 kcal/mol (385.2755 without restraints) Performing minimization step: 4013. Total energy = 385.4800 kcal/mol (385.2591 without restraints) Performing minimization step: 4014. Total energy = 385.4637 kcal/mol (385.2428 without restraints) Performing minimization step: 4015. Total energy = 385.4477 kcal/mol (385.2268 without restraints) Performing minimization step: 4016. Total energy = 385.4315 kcal/mol (385.2107 without restraints) Performing minimization step: 4017. Total energy = 385.4152 kcal/mol (385.1944 without restraints) Performing minimization step: 4018. Total energy = 385.3984 kcal/mol (385.1776 without restraints) Performing minimization step: 4019. Total energy = 385.3820 kcal/mol (385.1612 without restraints) Performing minimization step: 4020. Total energy = 385.3657 kcal/mol (385.1449 without restraints) Performing minimization step: 4021. Total energy = 385.3494 kcal/mol (385.1286 without restraints) Performing minimization step: 4022. Total energy = 385.3328 kcal/mol (385.1121 without restraints) Performing minimization step: 4023. Total energy = 385.3168 kcal/mol (385.0961 without restraints) Performing minimization step: 4024. Total energy = 385.3005 kcal/mol (385.0799 without restraints) Performing minimization step: 4025. Total energy = 385.2843 kcal/mol (385.0637 without restraints) Performing minimization step: 4026. Total energy = 385.2681 kcal/mol (385.0475 without restraints) Performing minimization step: 4027. Total energy = 385.2519 kcal/mol (385.0313 without restraints) Performing minimization step: 4028. Total energy = 385.2357 kcal/mol (385.0151 without restraints) Performing minimization step: 4029. Total energy = 385.2195 kcal/mol (384.9989 without restraints) Performing minimization step: 4030. Total energy = 385.2036 kcal/mol (384.9831 without restraints) Performing minimization step: 4031. Total energy = 385.1874 kcal/mol (384.9669 without restraints) Performing minimization step: 4032. Total energy = 385.1712 kcal/mol (384.9507 without restraints) Performing minimization step: 4033. Total energy = 385.1548 kcal/mol (384.9343 without restraints) Performing minimization step: 4034. Total energy = 385.1386 kcal/mol (384.9182 without restraints) Performing minimization step: 4035. Total energy = 385.1225 kcal/mol (384.9020 without restraints) Performing minimization step: 4036. Total energy = 385.1064 kcal/mol (384.8861 without restraints) Performing minimization step: 4037. Total energy = 385.0902 kcal/mol (384.8698 without restraints) Performing minimization step: 4038. Total energy = 385.0742 kcal/mol (384.8538 without restraints) Performing minimization step: 4039. Total energy = 385.0582 kcal/mol (384.8379 without restraints) Performing minimization step: 4040. Total energy = 385.0422 kcal/mol (384.8218 without restraints) Performing minimization step: 4041. Total energy = 385.0258 kcal/mol (384.8055 without restraints) Performing minimization step: 4042. Total energy = 385.0098 kcal/mol (384.7895 without restraints) Performing minimization step: 4043. Total energy = 384.9937 kcal/mol (384.7734 without restraints) Performing minimization step: 4044. Total energy = 384.9778 kcal/mol (384.7578 without restraints) Performing minimization step: 4045. Total energy = 384.9620 kcal/mol (384.7417 without restraints) Performing minimization step: 4046. Total energy = 384.9459 kcal/mol (384.7257 without restraints) Performing minimization step: 4047. Total energy = 384.9298 kcal/mol (384.7096 without restraints) Performing minimization step: 4048. Total energy = 384.9138 kcal/mol (384.6936 without restraints) Performing minimization step: 4049. Total energy = 384.8979 kcal/mol (384.6778 without restraints) Performing minimization step: 4050. Total energy = 384.8823 kcal/mol (384.6623 without restraints) Performing minimization step: 4051. Total energy = 384.8664 kcal/mol (384.6463 without restraints) Performing minimization step: 4052. Total energy = 384.8504 kcal/mol (384.6304 without restraints) Performing minimization step: 4053. Total energy = 384.8344 kcal/mol (384.6142 without restraints) Performing minimization step: 4054. Total energy = 384.8183 kcal/mol (384.5982 without restraints) Performing minimization step: 4055. Total energy = 384.8023 kcal/mol (384.5822 without restraints) Performing minimization step: 4056. Total energy = 384.7863 kcal/mol (384.5663 without restraints) Performing minimization step: 4057. Total energy = 384.7703 kcal/mol (384.5503 without restraints) Performing minimization step: 4058. Total energy = 384.7543 kcal/mol (384.5344 without restraints) Performing minimization step: 4059. Total energy = 384.7384 kcal/mol (384.5184 without restraints) Performing minimization step: 4060. Total energy = 384.7224 kcal/mol (384.5025 without restraints) Performing minimization step: 4061. Total energy = 384.7065 kcal/mol (384.4865 without restraints) Performing minimization step: 4062. Total energy = 384.6905 kcal/mol (384.4706 without restraints) Performing minimization step: 4063. Total energy = 384.6746 kcal/mol (384.4547 without restraints) Performing minimization step: 4064. Total energy = 384.6584 kcal/mol (384.4385 without restraints) Performing minimization step: 4065. Total energy = 384.6425 kcal/mol (384.4227 without restraints) Performing minimization step: 4066. Total energy = 384.6266 kcal/mol (384.4068 without restraints) Performing minimization step: 4067. Total energy = 384.6105 kcal/mol (384.3907 without restraints) Performing minimization step: 4068. Total energy = 384.5944 kcal/mol (384.3746 without restraints) Performing minimization step: 4069. Total energy = 384.5786 kcal/mol (384.3589 without restraints) Performing minimization step: 4070. Total energy = 384.5629 kcal/mol (384.3431 without restraints) Performing minimization step: 4071. Total energy = 384.5473 kcal/mol (384.3275 without restraints) Performing minimization step: 4072. Total energy = 384.5317 kcal/mol (384.3120 without restraints) Performing minimization step: 4073. Total energy = 384.5159 kcal/mol (384.2962 without restraints) Performing minimization step: 4074. Total energy = 384.4998 kcal/mol (384.2801 without restraints) Performing minimization step: 4075. Total energy = 384.4840 kcal/mol (384.2643 without restraints) Performing minimization step: 4076. Total energy = 384.4681 kcal/mol (384.2485 without restraints) Performing minimization step: 4077. Total energy = 384.4519 kcal/mol (384.2323 without restraints) Performing minimization step: 4078. Total energy = 384.4361 kcal/mol (384.2165 without restraints) Performing minimization step: 4079. Total energy = 384.4203 kcal/mol (384.2008 without restraints) Performing minimization step: 4080. Total energy = 384.4042 kcal/mol (384.1846 without restraints) Performing minimization step: 4081. Total energy = 384.3885 kcal/mol (384.1690 without restraints) Performing minimization step: 4082. Total energy = 384.3727 kcal/mol (384.1533 without restraints) Performing minimization step: 4083. Total energy = 384.3572 kcal/mol (384.1377 without restraints) Performing minimization step: 4084. Total energy = 384.3412 kcal/mol (384.1216 without restraints) Performing minimization step: 4085. Total energy = 384.3253 kcal/mol (384.1059 without restraints) Performing minimization step: 4086. Total energy = 384.3093 kcal/mol (384.0898 without restraints) Performing minimization step: 4087. Total energy = 384.2940 kcal/mol (384.0746 without restraints) Performing minimization step: 4088. Total energy = 384.2783 kcal/mol (384.0589 without restraints) Performing minimization step: 4089. Total energy = 384.2628 kcal/mol (384.0433 without restraints) Performing minimization step: 4090. Total energy = 384.2469 kcal/mol (384.0275 without restraints) Performing minimization step: 4091. Total energy = 384.2311 kcal/mol (384.0118 without restraints) Performing minimization step: 4092. Total energy = 384.2153 kcal/mol (383.9959 without restraints) Performing minimization step: 4093. Total energy = 384.2005 kcal/mol (383.9813 without restraints) Performing minimization step: 4094. Total energy = 384.1847 kcal/mol (383.9654 without restraints) Performing minimization step: 4095. Total energy = 384.1697 kcal/mol (383.9505 without restraints) Performing minimization step: 4096. Total energy = 384.1539 kcal/mol (383.9346 without restraints) Performing minimization step: 4097. Total energy = 384.1393 kcal/mol (383.9202 without restraints) Performing minimization step: 4098. Total energy = 384.1236 kcal/mol (383.9044 without restraints) Performing minimization step: 4099. Total energy = 384.1091 kcal/mol (383.8901 without restraints) Performing minimization step: 4100. Total energy = 384.0934 kcal/mol (383.8743 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 384.0789 kcal/mol (383.8600 without restraints) Performing minimization step: 4102. Total energy = 384.0633 kcal/mol (383.8442 without restraints) Performing minimization step: 4103. Total energy = 384.0492 kcal/mol (383.8303 without restraints) Performing minimization step: 4104. Total energy = 384.0337 kcal/mol (383.8147 without restraints) Performing minimization step: 4105. Total energy = 384.0198 kcal/mol (383.8011 without restraints) Performing minimization step: 4106. Total energy = 384.0047 kcal/mol (383.7857 without restraints) Performing minimization step: 4107. Total energy = 383.9908 kcal/mol (383.7722 without restraints) Performing minimization step: 4108. Total energy = 383.9756 kcal/mol (383.7568 without restraints) Performing minimization step: 4109. Total energy = 383.9620 kcal/mol (383.7434 without restraints) Performing minimization step: 4110. Total energy = 383.9467 kcal/mol (383.7278 without restraints) Performing minimization step: 4111. Total energy = 383.9331 kcal/mol (383.7145 without restraints) Performing minimization step: 4112. Total energy = 383.9177 kcal/mol (383.6990 without restraints) Performing minimization step: 4113. Total energy = 383.9040 kcal/mol (383.6854 without restraints) Performing minimization step: 4114. Total energy = 383.8887 kcal/mol (383.6699 without restraints) Performing minimization step: 4115. Total energy = 383.8751 kcal/mol (383.6565 without restraints) Performing minimization step: 4116. Total energy = 383.8596 kcal/mol (383.6409 without restraints) Performing minimization step: 4117. Total energy = 383.8461 kcal/mol (383.6276 without restraints) Performing minimization step: 4118. Total energy = 383.8309 kcal/mol (383.6122 without restraints) Performing minimization step: 4119. Total energy = 383.8174 kcal/mol (383.5990 without restraints) Performing minimization step: 4120. Total energy = 383.8024 kcal/mol (383.5838 without restraints) Performing minimization step: 4121. Total energy = 383.7888 kcal/mol (383.5704 without restraints) Performing minimization step: 4122. Total energy = 383.7736 kcal/mol (383.5550 without restraints) Performing minimization step: 4123. Total energy = 383.7603 kcal/mol (383.5419 without restraints) Performing minimization step: 4124. Total energy = 383.7451 kcal/mol (383.5265 without restraints) Performing minimization step: 4125. Total energy = 383.7318 kcal/mol (383.5134 without restraints) Performing minimization step: 4126. Total energy = 383.7166 kcal/mol (383.4980 without restraints) Performing minimization step: 4127. Total energy = 383.7028 kcal/mol (383.4845 without restraints) Performing minimization step: 4128. Total energy = 383.6877 kcal/mol (383.4691 without restraints) Performing minimization step: 4129. Total energy = 383.6746 kcal/mol (383.4564 without restraints) Performing minimization step: 4130. Total energy = 383.6596 kcal/mol (383.4411 without restraints) Performing minimization step: 4131. Total energy = 383.6463 kcal/mol (383.4281 without restraints) Performing minimization step: 4132. Total energy = 383.6316 kcal/mol (383.4130 without restraints) Performing minimization step: 4133. Total energy = 383.6183 kcal/mol (383.4001 without restraints) Performing minimization step: 4134. Total energy = 383.6030 kcal/mol (383.3845 without restraints) Performing minimization step: 4135. Total energy = 383.5898 kcal/mol (383.3716 without restraints) Performing minimization step: 4136. Total energy = 383.5748 kcal/mol (383.3563 without restraints) Performing minimization step: 4137. Total energy = 383.5617 kcal/mol (383.3435 without restraints) Performing minimization step: 4138. Total energy = 383.5468 kcal/mol (383.3284 without restraints) Performing minimization step: 4139. Total energy = 383.5337 kcal/mol (383.3156 without restraints) Performing minimization step: 4140. Total energy = 383.5187 kcal/mol (383.3003 without restraints) Performing minimization step: 4141. Total energy = 383.5056 kcal/mol (383.2876 without restraints) Performing minimization step: 4142. Total energy = 383.4906 kcal/mol (383.2723 without restraints) Performing minimization step: 4143. Total energy = 383.4777 kcal/mol (383.2597 without restraints) Performing minimization step: 4144. Total energy = 383.4628 kcal/mol (383.2445 without restraints) Performing minimization step: 4145. Total energy = 383.4498 kcal/mol (383.2318 without restraints) Performing minimization step: 4146. Total energy = 383.4347 kcal/mol (383.2164 without restraints) Performing minimization step: 4147. Total energy = 383.4217 kcal/mol (383.2037 without restraints) Performing minimization step: 4148. Total energy = 383.4067 kcal/mol (383.1885 without restraints) Performing minimization step: 4149. Total energy = 383.3938 kcal/mol (383.1759 without restraints) Performing minimization step: 4150. Total energy = 383.3789 kcal/mol (383.1607 without restraints) Performing minimization step: 4151. Total energy = 383.3660 kcal/mol (383.1481 without restraints) Performing minimization step: 4152. Total energy = 383.3511 kcal/mol (383.1330 without restraints) Performing minimization step: 4153. Total energy = 383.3394 kcal/mol (383.1216 without restraints) Performing minimization step: 4154. Total energy = 383.3245 kcal/mol (383.1063 without restraints) Performing minimization step: 4155. Total energy = 383.3118 kcal/mol (383.0940 without restraints) Performing minimization step: 4156. Total energy = 383.2969 kcal/mol (383.0788 without restraints) Performing minimization step: 4157. Total energy = 383.2840 kcal/mol (383.0662 without restraints) Performing minimization step: 4158. Total energy = 383.2691 kcal/mol (383.0510 without restraints) Performing minimization step: 4159. Total energy = 383.2563 kcal/mol (383.0386 without restraints) Performing minimization step: 4160. Total energy = 383.2412 kcal/mol (383.0232 without restraints) Performing minimization step: 4161. Total energy = 383.2287 kcal/mol (383.0110 without restraints) Performing minimization step: 4162. Total energy = 383.2139 kcal/mol (382.9959 without restraints) Performing minimization step: 4163. Total energy = 383.2012 kcal/mol (382.9835 without restraints) Performing minimization step: 4164. Total energy = 383.1864 kcal/mol (382.9684 without restraints) Performing minimization step: 4165. Total energy = 383.1738 kcal/mol (382.9563 without restraints) Performing minimization step: 4166. Total energy = 383.1591 kcal/mol (382.9412 without restraints) Performing minimization step: 4167. Total energy = 383.1463 kcal/mol (382.9287 without restraints) Performing minimization step: 4168. Total energy = 383.1315 kcal/mol (382.9138 without restraints) Performing minimization step: 4169. Total energy = 383.1191 kcal/mol (382.9015 without restraints) Performing minimization step: 4170. Total energy = 383.1042 kcal/mol (382.8863 without restraints) Performing minimization step: 4171. Total energy = 383.0919 kcal/mol (382.8743 without restraints) Performing minimization step: 4172. Total energy = 383.0771 kcal/mol (382.8593 without restraints) Performing minimization step: 4173. Total energy = 383.0646 kcal/mol (382.8471 without restraints) Performing minimization step: 4174. Total energy = 383.0502 kcal/mol (382.8324 without restraints) Performing minimization step: 4175. Total energy = 383.0377 kcal/mol (382.8202 without restraints) Performing minimization step: 4176. Total energy = 383.0229 kcal/mol (382.8050 without restraints) Performing minimization step: 4177. Total energy = 383.0103 kcal/mol (382.7929 without restraints) Performing minimization step: 4178. Total energy = 382.9959 kcal/mol (382.7781 without restraints) Performing minimization step: 4179. Total energy = 382.9834 kcal/mol (382.7660 without restraints) Performing minimization step: 4180. Total energy = 382.9688 kcal/mol (382.7510 without restraints) Performing minimization step: 4181. Total energy = 382.9564 kcal/mol (382.7390 without restraints) Performing minimization step: 4182. Total energy = 382.9417 kcal/mol (382.7240 without restraints) Performing minimization step: 4183. Total energy = 382.9293 kcal/mol (382.7120 without restraints) Performing minimization step: 4184. Total energy = 382.9150 kcal/mol (382.6974 without restraints) Performing minimization step: 4185. Total energy = 382.9025 kcal/mol (382.6852 without restraints) Performing minimization step: 4186. Total energy = 382.8879 kcal/mol (382.6702 without restraints) Performing minimization step: 4187. Total energy = 382.8758 kcal/mol (382.6585 without restraints) Performing minimization step: 4188. Total energy = 382.8610 kcal/mol (382.6433 without restraints) Performing minimization step: 4189. Total energy = 382.8487 kcal/mol (382.6314 without restraints) Performing minimization step: 4190. Total energy = 382.8341 kcal/mol (382.6165 without restraints) Performing minimization step: 4191. Total energy = 382.8222 kcal/mol (382.6050 without restraints) Performing minimization step: 4192. Total energy = 382.8077 kcal/mol (382.5901 without restraints) Performing minimization step: 4193. Total energy = 382.7955 kcal/mol (382.5783 without restraints) Performing minimization step: 4194. Total energy = 382.7809 kcal/mol (382.5634 without restraints) Performing minimization step: 4195. Total energy = 382.7688 kcal/mol (382.5518 without restraints) Performing minimization step: 4196. Total energy = 382.7544 kcal/mol (382.5369 without restraints) Performing minimization step: 4197. Total energy = 382.7419 kcal/mol (382.5247 without restraints) Performing minimization step: 4198. Total energy = 382.7275 kcal/mol (382.5100 without restraints) Performing minimization step: 4199. Total energy = 382.7154 kcal/mol (382.4983 without restraints) Performing minimization step: 4200. Total energy = 382.7010 kcal/mol (382.4836 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 382.6890 kcal/mol (382.4719 without restraints) Performing minimization step: 4202. Total energy = 382.6745 kcal/mol (382.4571 without restraints) Performing minimization step: 4203. Total energy = 382.6625 kcal/mol (382.4455 without restraints) Performing minimization step: 4204. Total energy = 382.6480 kcal/mol (382.4306 without restraints) Performing minimization step: 4205. Total energy = 382.6360 kcal/mol (382.4190 without restraints) Performing minimization step: 4206. Total energy = 382.6215 kcal/mol (382.4041 without restraints) Performing minimization step: 4207. Total energy = 382.6095 kcal/mol (382.3925 without restraints) Performing minimization step: 4208. Total energy = 382.5950 kcal/mol (382.3775 without restraints) Performing minimization step: 4209. Total energy = 382.5830 kcal/mol (382.3662 without restraints) Performing minimization step: 4210. Total energy = 382.5687 kcal/mol (382.3514 without restraints) Performing minimization step: 4211. Total energy = 382.5568 kcal/mol (382.3398 without restraints) Performing minimization step: 4212. Total energy = 382.5424 kcal/mol (382.3251 without restraints) Performing minimization step: 4213. Total energy = 382.5305 kcal/mol (382.3136 without restraints) Performing minimization step: 4214. Total energy = 382.5161 kcal/mol (382.2989 without restraints) Performing minimization step: 4215. Total energy = 382.5038 kcal/mol (382.2869 without restraints) Performing minimization step: 4216. Total energy = 382.4894 kcal/mol (382.2721 without restraints) Performing minimization step: 4217. Total energy = 382.4775 kcal/mol (382.2607 without restraints) Performing minimization step: 4218. Total energy = 382.4632 kcal/mol (382.2459 without restraints) Performing minimization step: 4219. Total energy = 382.4515 kcal/mol (382.2347 without restraints) Performing minimization step: 4220. Total energy = 382.4372 kcal/mol (382.2200 without restraints) Performing minimization step: 4221. Total energy = 382.4254 kcal/mol (382.2086 without restraints) Performing minimization step: 4222. Total energy = 382.4110 kcal/mol (382.1939 without restraints) Performing minimization step: 4223. Total energy = 382.3993 kcal/mol (382.1825 without restraints) Performing minimization step: 4224. Total energy = 382.3849 kcal/mol (382.1678 without restraints) Performing minimization step: 4225. Total energy = 382.3732 kcal/mol (382.1565 without restraints) Performing minimization step: 4226. Total energy = 382.3589 kcal/mol (382.1418 without restraints) Performing minimization step: 4227. Total energy = 382.3472 kcal/mol (382.1305 without restraints) Performing minimization step: 4228. Total energy = 382.3329 kcal/mol (382.1158 without restraints) Performing minimization step: 4229. Total energy = 382.3213 kcal/mol (382.1046 without restraints) Performing minimization step: 4230. Total energy = 382.3070 kcal/mol (382.0899 without restraints) Performing minimization step: 4231. Total energy = 382.2953 kcal/mol (382.0787 without restraints) Performing minimization step: 4232. Total energy = 382.2811 kcal/mol (382.0640 without restraints) Performing minimization step: 4233. Total energy = 382.2695 kcal/mol (382.0529 without restraints) Performing minimization step: 4234. Total energy = 382.2553 kcal/mol (382.0383 without restraints) Performing minimization step: 4235. Total energy = 382.2437 kcal/mol (382.0271 without restraints) Performing minimization step: 4236. Total energy = 382.2295 kcal/mol (382.0125 without restraints) Performing minimization step: 4237. Total energy = 382.2180 kcal/mol (382.0014 without restraints) Performing minimization step: 4238. Total energy = 382.2038 kcal/mol (381.9868 without restraints) Performing minimization step: 4239. Total energy = 382.1923 kcal/mol (381.9757 without restraints) Performing minimization step: 4240. Total energy = 382.1781 kcal/mol (381.9611 without restraints) Performing minimization step: 4241. Total energy = 382.1666 kcal/mol (381.9501 without restraints) Performing minimization step: 4242. Total energy = 382.1524 kcal/mol (381.9355 without restraints) Performing minimization step: 4243. Total energy = 382.1412 kcal/mol (381.9247 without restraints) Performing minimization step: 4244. Total energy = 382.1272 kcal/mol (381.9103 without restraints) Performing minimization step: 4245. Total energy = 382.1155 kcal/mol (381.8991 without restraints) Performing minimization step: 4246. Total energy = 382.1014 kcal/mol (381.8845 without restraints) Performing minimization step: 4247. Total energy = 382.0900 kcal/mol (381.8735 without restraints) Performing minimization step: 4248. Total energy = 382.0758 kcal/mol (381.8590 without restraints) Performing minimization step: 4249. Total energy = 382.0644 kcal/mol (381.8480 without restraints) Performing minimization step: 4250. Total energy = 382.0503 kcal/mol (381.8334 without restraints) Performing minimization step: 4251. Total energy = 382.0391 kcal/mol (381.8227 without restraints) Performing minimization step: 4252. Total energy = 382.0250 kcal/mol (381.8082 without restraints) Performing minimization step: 4253. Total energy = 382.0136 kcal/mol (381.7973 without restraints) Performing minimization step: 4254. Total energy = 381.9996 kcal/mol (381.7828 without restraints) Performing minimization step: 4255. Total energy = 381.9883 kcal/mol (381.7719 without restraints) Performing minimization step: 4256. Total energy = 381.9745 kcal/mol (381.7576 without restraints) Performing minimization step: 4257. Total energy = 381.9630 kcal/mol (381.7467 without restraints) Performing minimization step: 4258. Total energy = 381.9494 kcal/mol (381.7327 without restraints) Performing minimization step: 4259. Total energy = 381.9382 kcal/mol (381.7219 without restraints) Performing minimization step: 4260. Total energy = 381.9241 kcal/mol (381.7074 without restraints) Performing minimization step: 4261. Total energy = 381.9129 kcal/mol (381.6966 without restraints) Performing minimization step: 4262. Total energy = 381.8990 kcal/mol (381.6824 without restraints) Performing minimization step: 4263. Total energy = 381.8879 kcal/mol (381.6716 without restraints) Performing minimization step: 4264. Total energy = 381.8741 kcal/mol (381.6574 without restraints) Performing minimization step: 4265. Total energy = 381.8631 kcal/mol (381.6472 without restraints) Performing minimization step: 4266. Total energy = 381.8494 kcal/mol (381.6327 without restraints) Performing minimization step: 4267. Total energy = 381.8384 kcal/mol (381.6222 without restraints) Performing minimization step: 4268. Total energy = 381.8244 kcal/mol (381.6078 without restraints) Performing minimization step: 4269. Total energy = 381.8133 kcal/mol (381.5972 without restraints) Performing minimization step: 4270. Total energy = 381.7994 kcal/mol (381.5828 without restraints) Performing minimization step: 4271. Total energy = 381.7883 kcal/mol (381.5721 without restraints) Performing minimization step: 4272. Total energy = 381.7742 kcal/mol (381.5575 without restraints) Performing minimization step: 4273. Total energy = 381.7630 kcal/mol (381.5469 without restraints) Performing minimization step: 4274. Total energy = 381.7491 kcal/mol (381.5325 without restraints) Performing minimization step: 4275. Total energy = 381.7382 kcal/mol (381.5221 without restraints) Performing minimization step: 4276. Total energy = 381.7242 kcal/mol (381.5077 without restraints) Performing minimization step: 4277. Total energy = 381.7133 kcal/mol (381.4972 without restraints) Performing minimization step: 4278. Total energy = 381.6994 kcal/mol (381.4829 without restraints) Performing minimization step: 4279. Total energy = 381.6885 kcal/mol (381.4725 without restraints) Performing minimization step: 4280. Total energy = 381.6735 kcal/mol (381.4569 without restraints) Performing minimization step: 4281. Total energy = 381.6628 kcal/mol (381.4468 without restraints) Performing minimization step: 4282. Total energy = 381.6484 kcal/mol (381.4319 without restraints) Performing minimization step: 4283. Total energy = 381.6382 kcal/mol (381.4222 without restraints) Performing minimization step: 4284. Total energy = 381.6238 kcal/mol (381.4073 without restraints) Performing minimization step: 4285. Total energy = 381.6130 kcal/mol (381.3971 without restraints) Performing minimization step: 4286. Total energy = 381.5989 kcal/mol (381.3824 without restraints) Performing minimization step: 4287. Total energy = 381.5880 kcal/mol (381.3722 without restraints) Performing minimization step: 4288. Total energy = 381.5740 kcal/mol (381.3575 without restraints) Performing minimization step: 4289. Total energy = 381.5635 kcal/mol (381.3475 without restraints) Performing minimization step: 4290. Total energy = 381.5497 kcal/mol (381.3333 without restraints) Performing minimization step: 4291. Total energy = 381.5388 kcal/mol (381.3229 without restraints) Performing minimization step: 4292. Total energy = 381.5250 kcal/mol (381.3087 without restraints) Performing minimization step: 4293. Total energy = 381.5144 kcal/mol (381.2985 without restraints) Performing minimization step: 4294. Total energy = 381.5004 kcal/mol (381.2841 without restraints) Performing minimization step: 4295. Total energy = 381.4897 kcal/mol (381.2738 without restraints) Performing minimization step: 4296. Total energy = 381.4759 kcal/mol (381.2596 without restraints) Performing minimization step: 4297. Total energy = 381.4652 kcal/mol (381.2493 without restraints) Performing minimization step: 4298. Total energy = 381.4515 kcal/mol (381.2352 without restraints) Performing minimization step: 4299. Total energy = 381.4407 kcal/mol (381.2249 without restraints) Performing minimization step: 4300. Total energy = 381.4272 kcal/mol (381.2110 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 381.4167 kcal/mol (381.2009 without restraints) Performing minimization step: 4302. Total energy = 381.4030 kcal/mol (381.1867 without restraints) Performing minimization step: 4303. Total energy = 381.3923 kcal/mol (381.1765 without restraints) Performing minimization step: 4304. Total energy = 381.3782 kcal/mol (381.1620 without restraints) Performing minimization step: 4305. Total energy = 381.3675 kcal/mol (381.1518 without restraints) Performing minimization step: 4306. Total energy = 381.3542 kcal/mol (381.1380 without restraints) Performing minimization step: 4307. Total energy = 381.3438 kcal/mol (381.1281 without restraints) Performing minimization step: 4308. Total energy = 381.3303 kcal/mol (381.1142 without restraints) Performing minimization step: 4309. Total energy = 381.3198 kcal/mol (381.1041 without restraints) Performing minimization step: 4310. Total energy = 381.3061 kcal/mol (381.0899 without restraints) Performing minimization step: 4311. Total energy = 381.2956 kcal/mol (381.0800 without restraints) Performing minimization step: 4312. Total energy = 381.2821 kcal/mol (381.0659 without restraints) Performing minimization step: 4313. Total energy = 381.2715 kcal/mol (381.0559 without restraints) Performing minimization step: 4314. Total energy = 381.2579 kcal/mol (381.0418 without restraints) Performing minimization step: 4315. Total energy = 381.2475 kcal/mol (381.0319 without restraints) Performing minimization step: 4316. Total energy = 381.2336 kcal/mol (381.0174 without restraints) Performing minimization step: 4317. Total energy = 381.2232 kcal/mol (381.0076 without restraints) Performing minimization step: 4318. Total energy = 381.2094 kcal/mol (380.9933 without restraints) Performing minimization step: 4319. Total energy = 381.1989 kcal/mol (380.9833 without restraints) Performing minimization step: 4320. Total energy = 381.1853 kcal/mol (380.9693 without restraints) Performing minimization step: 4321. Total energy = 381.1748 kcal/mol (380.9592 without restraints) Performing minimization step: 4322. Total energy = 381.1613 kcal/mol (380.9452 without restraints) Performing minimization step: 4323. Total energy = 381.1508 kcal/mol (380.9352 without restraints) Performing minimization step: 4324. Total energy = 381.1372 kcal/mol (380.9212 without restraints) Performing minimization step: 4325. Total energy = 381.1270 kcal/mol (380.9115 without restraints) Performing minimization step: 4326. Total energy = 381.1135 kcal/mol (380.8974 without restraints) Performing minimization step: 4327. Total energy = 381.1029 kcal/mol (380.8873 without restraints) Performing minimization step: 4328. Total energy = 381.0893 kcal/mol (380.8733 without restraints) Performing minimization step: 4329. Total energy = 381.0789 kcal/mol (380.8634 without restraints) Performing minimization step: 4330. Total energy = 381.0654 kcal/mol (380.8494 without restraints) Performing minimization step: 4331. Total energy = 381.0550 kcal/mol (380.8395 without restraints) Performing minimization step: 4332. Total energy = 381.0417 kcal/mol (380.8257 without restraints) Performing minimization step: 4333. Total energy = 381.0314 kcal/mol (380.8159 without restraints) Performing minimization step: 4334. Total energy = 381.0179 kcal/mol (380.8020 without restraints) Performing minimization step: 4335. Total energy = 381.0076 kcal/mol (380.7922 without restraints) Performing minimization step: 4336. Total energy = 380.9942 kcal/mol (380.7782 without restraints) Performing minimization step: 4337. Total energy = 380.9837 kcal/mol (380.7682 without restraints) Performing minimization step: 4338. Total energy = 380.9702 kcal/mol (380.7543 without restraints) Performing minimization step: 4339. Total energy = 380.9600 kcal/mol (380.7445 without restraints) Performing minimization step: 4340. Total energy = 380.9465 kcal/mol (380.7306 without restraints) Performing minimization step: 4341. Total energy = 380.9363 kcal/mol (380.7209 without restraints) Performing minimization step: 4342. Total energy = 380.9229 kcal/mol (380.7070 without restraints) Performing minimization step: 4343. Total energy = 380.9127 kcal/mol (380.6973 without restraints) Performing minimization step: 4344. Total energy = 380.8993 kcal/mol (380.6834 without restraints) Performing minimization step: 4345. Total energy = 380.8891 kcal/mol (380.6737 without restraints) Performing minimization step: 4346. Total energy = 380.8757 kcal/mol (380.6599 without restraints) Performing minimization step: 4347. Total energy = 380.8655 kcal/mol (380.6502 without restraints) Performing minimization step: 4348. Total energy = 380.8522 kcal/mol (380.6363 without restraints) Performing minimization step: 4349. Total energy = 380.8421 kcal/mol (380.6269 without restraints) Performing minimization step: 4350. Total energy = 380.8286 kcal/mol (380.6128 without restraints) Performing minimization step: 4351. Total energy = 380.8186 kcal/mol (380.6032 without restraints) Performing minimization step: 4352. Total energy = 380.8050 kcal/mol (380.5891 without restraints) Performing minimization step: 4353. Total energy = 380.7953 kcal/mol (380.5800 without restraints) Performing minimization step: 4354. Total energy = 380.7820 kcal/mol (380.5662 without restraints) Performing minimization step: 4355. Total energy = 380.7719 kcal/mol (380.5566 without restraints) Performing minimization step: 4356. Total energy = 380.7585 kcal/mol (380.5428 without restraints) Performing minimization step: 4357. Total energy = 380.7485 kcal/mol (380.5332 without restraints) Performing minimization step: 4358. Total energy = 380.7352 kcal/mol (380.5194 without restraints) Performing minimization step: 4359. Total energy = 380.7251 kcal/mol (380.5097 without restraints) Performing minimization step: 4360. Total energy = 380.7119 kcal/mol (380.4961 without restraints) Performing minimization step: 4361. Total energy = 380.7017 kcal/mol (380.4864 without restraints) Performing minimization step: 4362. Total energy = 380.6884 kcal/mol (380.4727 without restraints) Performing minimization step: 4363. Total energy = 380.6784 kcal/mol (380.4632 without restraints) Performing minimization step: 4364. Total energy = 380.6655 kcal/mol (380.4499 without restraints) Performing minimization step: 4365. Total energy = 380.6553 kcal/mol (380.4402 without restraints) Performing minimization step: 4366. Total energy = 380.6426 kcal/mol (380.4269 without restraints) Performing minimization step: 4367. Total energy = 380.6324 kcal/mol (380.4172 without restraints) Performing minimization step: 4368. Total energy = 380.6193 kcal/mol (380.4038 without restraints) Performing minimization step: 4369. Total energy = 380.6093 kcal/mol (380.3941 without restraints) Performing minimization step: 4370. Total energy = 380.5961 kcal/mol (380.3804 without restraints) Performing minimization step: 4371. Total energy = 380.5862 kcal/mol (380.3710 without restraints) Performing minimization step: 4372. Total energy = 380.5728 kcal/mol (380.3572 without restraints) Performing minimization step: 4373. Total energy = 380.5629 kcal/mol (380.3478 without restraints) Performing minimization step: 4374. Total energy = 380.5497 kcal/mol (380.3341 without restraints) Performing minimization step: 4375. Total energy = 380.5399 kcal/mol (380.3248 without restraints) Performing minimization step: 4376. Total energy = 380.5267 kcal/mol (380.3111 without restraints) Performing minimization step: 4377. Total energy = 380.5169 kcal/mol (380.3018 without restraints) Performing minimization step: 4378. Total energy = 380.5037 kcal/mol (380.2881 without restraints) Performing minimization step: 4379. Total energy = 380.4939 kcal/mol (380.2788 without restraints) Performing minimization step: 4380. Total energy = 380.4808 kcal/mol (380.2652 without restraints) Performing minimization step: 4381. Total energy = 380.4710 kcal/mol (380.2559 without restraints) Performing minimization step: 4382. Total energy = 380.4576 kcal/mol (380.2420 without restraints) Performing minimization step: 4383. Total energy = 380.4476 kcal/mol (380.2326 without restraints) Performing minimization step: 4384. Total energy = 380.4345 kcal/mol (380.2189 without restraints) Performing minimization step: 4385. Total energy = 380.4247 kcal/mol (380.2097 without restraints) Performing minimization step: 4386. Total energy = 380.4116 kcal/mol (380.1961 without restraints) Performing minimization step: 4387. Total energy = 380.4019 kcal/mol (380.1869 without restraints) Performing minimization step: 4388. Total energy = 380.3888 kcal/mol (380.1733 without restraints) Performing minimization step: 4389. Total energy = 380.3789 kcal/mol (380.1639 without restraints) Performing minimization step: 4390. Total energy = 380.3659 kcal/mol (380.1503 without restraints) Performing minimization step: 4391. Total energy = 380.3559 kcal/mol (380.1410 without restraints) Performing minimization step: 4392. Total energy = 380.3429 kcal/mol (380.1274 without restraints) Performing minimization step: 4393. Total energy = 380.3334 kcal/mol (380.1184 without restraints) Performing minimization step: 4394. Total energy = 380.3204 kcal/mol (380.1049 without restraints) Performing minimization step: 4395. Total energy = 380.3107 kcal/mol (380.0957 without restraints) Performing minimization step: 4396. Total energy = 380.2977 kcal/mol (380.0822 without restraints) Performing minimization step: 4397. Total energy = 380.2880 kcal/mol (380.0731 without restraints) Performing minimization step: 4398. Total energy = 380.2750 kcal/mol (380.0596 without restraints) Performing minimization step: 4399. Total energy = 380.2656 kcal/mol (380.0507 without restraints) Performing minimization step: 4400. Total energy = 380.2525 kcal/mol (380.0370 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 380.2430 kcal/mol (380.0281 without restraints) Performing minimization step: 4402. Total energy = 380.2300 kcal/mol (380.0146 without restraints) Performing minimization step: 4403. Total energy = 380.2205 kcal/mol (380.0056 without restraints) Performing minimization step: 4404. Total energy = 380.2075 kcal/mol (379.9921 without restraints) Performing minimization step: 4405. Total energy = 380.1977 kcal/mol (379.9828 without restraints) Performing minimization step: 4406. Total energy = 380.1847 kcal/mol (379.9694 without restraints) Performing minimization step: 4407. Total energy = 380.1752 kcal/mol (379.9603 without restraints) Performing minimization step: 4408. Total energy = 380.1623 kcal/mol (379.9469 without restraints) Performing minimization step: 4409. Total energy = 380.1530 kcal/mol (379.9381 without restraints) Performing minimization step: 4410. Total energy = 380.1400 kcal/mol (379.9247 without restraints) Performing minimization step: 4411. Total energy = 380.1305 kcal/mol (379.9157 without restraints) Performing minimization step: 4412. Total energy = 380.1176 kcal/mol (379.9023 without restraints) Performing minimization step: 4413. Total energy = 380.1080 kcal/mol (379.8931 without restraints) Performing minimization step: 4414. Total energy = 380.0951 kcal/mol (379.8797 without restraints) Performing minimization step: 4415. Total energy = 380.0858 kcal/mol (379.8710 without restraints) Performing minimization step: 4416. Total energy = 380.0729 kcal/mol (379.8575 without restraints) Performing minimization step: 4417. Total energy = 380.0634 kcal/mol (379.8486 without restraints) Performing minimization step: 4418. Total energy = 380.0505 kcal/mol (379.8352 without restraints) Performing minimization step: 4419. Total energy = 380.0409 kcal/mol (379.8261 without restraints) Performing minimization step: 4420. Total energy = 380.0280 kcal/mol (379.8128 without restraints) Performing minimization step: 4421. Total energy = 380.0184 kcal/mol (379.8037 without restraints) Performing minimization step: 4422. Total energy = 380.0055 kcal/mol (379.7902 without restraints) Performing minimization step: 4423. Total energy = 379.9962 kcal/mol (379.7814 without restraints) Performing minimization step: 4424. Total energy = 379.9833 kcal/mol (379.7681 without restraints) Performing minimization step: 4425. Total energy = 379.9740 kcal/mol (379.7592 without restraints) Performing minimization step: 4426. Total energy = 379.9611 kcal/mol (379.7459 without restraints) Performing minimization step: 4427. Total energy = 379.9518 kcal/mol (379.7370 without restraints) Performing minimization step: 4428. Total energy = 379.9390 kcal/mol (379.7237 without restraints) Performing minimization step: 4429. Total energy = 379.9296 kcal/mol (379.7149 without restraints) Performing minimization step: 4430. Total energy = 379.9169 kcal/mol (379.7016 without restraints) Performing minimization step: 4431. Total energy = 379.9077 kcal/mol (379.6930 without restraints) Performing minimization step: 4432. Total energy = 379.8950 kcal/mol (379.6798 without restraints) Performing minimization step: 4433. Total energy = 379.8857 kcal/mol (379.6710 without restraints) Performing minimization step: 4434. Total energy = 379.8729 kcal/mol (379.6577 without restraints) Performing minimization step: 4435. Total energy = 379.8637 kcal/mol (379.6490 without restraints) Performing minimization step: 4436. Total energy = 379.8509 kcal/mol (379.6357 without restraints) Performing minimization step: 4437. Total energy = 379.8416 kcal/mol (379.6269 without restraints) Performing minimization step: 4438. Total energy = 379.8289 kcal/mol (379.6137 without restraints) Performing minimization step: 4439. Total energy = 379.8197 kcal/mol (379.6050 without restraints) Performing minimization step: 4440. Total energy = 379.8070 kcal/mol (379.5918 without restraints) Performing minimization step: 4441. Total energy = 379.7978 kcal/mol (379.5831 without restraints) Performing minimization step: 4442. Total energy = 379.7849 kcal/mol (379.5697 without restraints) Performing minimization step: 4443. Total energy = 379.7758 kcal/mol (379.5612 without restraints) Performing minimization step: 4444. Total energy = 379.7632 kcal/mol (379.5480 without restraints) Performing minimization step: 4445. Total energy = 379.7540 kcal/mol (379.5393 without restraints) Performing minimization step: 4446. Total energy = 379.7413 kcal/mol (379.5262 without restraints) Performing minimization step: 4447. Total energy = 379.7321 kcal/mol (379.5175 without restraints) Performing minimization step: 4448. Total energy = 379.7193 kcal/mol (379.5042 without restraints) Performing minimization step: 4449. Total energy = 379.7101 kcal/mol (379.4955 without restraints) Performing minimization step: 4450. Total energy = 379.6975 kcal/mol (379.4824 without restraints) Performing minimization step: 4451. Total energy = 379.6884 kcal/mol (379.4738 without restraints) Performing minimization step: 4452. Total energy = 379.6758 kcal/mol (379.4606 without restraints) Performing minimization step: 4453. Total energy = 379.6667 kcal/mol (379.4521 without restraints) Performing minimization step: 4454. Total energy = 379.6539 kcal/mol (379.4388 without restraints) Performing minimization step: 4455. Total energy = 379.6448 kcal/mol (379.4302 without restraints) Performing minimization step: 4456. Total energy = 379.6322 kcal/mol (379.4171 without restraints) Performing minimization step: 4457. Total energy = 379.6232 kcal/mol (379.4088 without restraints) Performing minimization step: 4458. Total energy = 379.6106 kcal/mol (379.3955 without restraints) Performing minimization step: 4459. Total energy = 379.6018 kcal/mol (379.3873 without restraints) Performing minimization step: 4460. Total energy = 379.5893 kcal/mol (379.3742 without restraints) Performing minimization step: 4461. Total energy = 379.5802 kcal/mol (379.3657 without restraints) Performing minimization step: 4462. Total energy = 379.5677 kcal/mol (379.3526 without restraints) Performing minimization step: 4463. Total energy = 379.5587 kcal/mol (379.3441 without restraints) Performing minimization step: 4464. Total energy = 379.5461 kcal/mol (379.3311 without restraints) Performing minimization step: 4465. Total energy = 379.5371 kcal/mol (379.3226 without restraints) Performing minimization step: 4466. Total energy = 379.5246 kcal/mol (379.3095 without restraints) Performing minimization step: 4467. Total energy = 379.5156 kcal/mol (379.3011 without restraints) Performing minimization step: 4468. Total energy = 379.5031 kcal/mol (379.2881 without restraints) Performing minimization step: 4469. Total energy = 379.4941 kcal/mol (379.2796 without restraints) Performing minimization step: 4470. Total energy = 379.4816 kcal/mol (379.2666 without restraints) Performing minimization step: 4471. Total energy = 379.4727 kcal/mol (379.2582 without restraints) Performing minimization step: 4472. Total energy = 379.4602 kcal/mol (379.2452 without restraints) Performing minimization step: 4473. Total energy = 379.4512 kcal/mol (379.2368 without restraints) Performing minimization step: 4474. Total energy = 379.4387 kcal/mol (379.2236 without restraints) Performing minimization step: 4475. Total energy = 379.4295 kcal/mol (379.2150 without restraints) Performing minimization step: 4476. Total energy = 379.4168 kcal/mol (379.2017 without restraints) Performing minimization step: 4477. Total energy = 379.4081 kcal/mol (379.1936 without restraints) Performing minimization step: 4478. Total energy = 379.3956 kcal/mol (379.1806 without restraints) Performing minimization step: 4479. Total energy = 379.3867 kcal/mol (379.1723 without restraints) Performing minimization step: 4480. Total energy = 379.3741 kcal/mol (379.1591 without restraints) Performing minimization step: 4481. Total energy = 379.3652 kcal/mol (379.1507 without restraints) Performing minimization step: 4482. Total energy = 379.3528 kcal/mol (379.1378 without restraints) Performing minimization step: 4483. Total energy = 379.3439 kcal/mol (379.1295 without restraints) Performing minimization step: 4484. Total energy = 379.3315 kcal/mol (379.1166 without restraints) Performing minimization step: 4485. Total energy = 379.3228 kcal/mol (379.1084 without restraints) Performing minimization step: 4486. Total energy = 379.3105 kcal/mol (379.0956 without restraints) Performing minimization step: 4487. Total energy = 379.3017 kcal/mol (379.0873 without restraints) Performing minimization step: 4488. Total energy = 379.2896 kcal/mol (379.0747 without restraints) Performing minimization step: 4489. Total energy = 379.2808 kcal/mol (379.0664 without restraints) Performing minimization step: 4490. Total energy = 379.2684 kcal/mol (379.0535 without restraints) Performing minimization step: 4491. Total energy = 379.2598 kcal/mol (379.0454 without restraints) Performing minimization step: 4492. Total energy = 379.2475 kcal/mol (379.0326 without restraints) Performing minimization step: 4493. Total energy = 379.2387 kcal/mol (379.0243 without restraints) Performing minimization step: 4494. Total energy = 379.2263 kcal/mol (379.0113 without restraints) Performing minimization step: 4495. Total energy = 379.2174 kcal/mol (379.0030 without restraints) Performing minimization step: 4496. Total energy = 379.2049 kcal/mol (378.9900 without restraints) Performing minimization step: 4497. Total energy = 379.1961 kcal/mol (378.9817 without restraints) Performing minimization step: 4498. Total energy = 379.1838 kcal/mol (378.9689 without restraints) Performing minimization step: 4499. Total energy = 379.1751 kcal/mol (378.9607 without restraints) Performing minimization step: 4500. Total energy = 379.1626 kcal/mol (378.9477 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 379.1539 kcal/mol (378.9395 without restraints) Performing minimization step: 4502. Total energy = 379.1416 kcal/mol (378.9267 without restraints) Performing minimization step: 4503. Total energy = 379.1332 kcal/mol (378.9190 without restraints) Performing minimization step: 4504. Total energy = 379.1211 kcal/mol (378.9064 without restraints) Performing minimization step: 4505. Total energy = 379.1128 kcal/mol (378.8984 without restraints) Performing minimization step: 4506. Total energy = 379.1006 kcal/mol (378.8856 without restraints) Performing minimization step: 4507. Total energy = 379.0920 kcal/mol (378.8776 without restraints) Performing minimization step: 4508. Total energy = 379.0798 kcal/mol (378.8649 without restraints) Performing minimization step: 4509. Total energy = 379.0711 kcal/mol (378.8568 without restraints) Performing minimization step: 4510. Total energy = 379.0589 kcal/mol (378.8441 without restraints) Performing minimization step: 4511. Total energy = 379.0503 kcal/mol (378.8360 without restraints) Performing minimization step: 4512. Total energy = 379.0379 kcal/mol (378.8230 without restraints) Performing minimization step: 4513. Total energy = 379.0292 kcal/mol (378.8149 without restraints) Performing minimization step: 4514. Total energy = 379.0171 kcal/mol (378.8022 without restraints) Performing minimization step: 4515. Total energy = 379.0084 kcal/mol (378.7941 without restraints) Performing minimization step: 4516. Total energy = 378.9966 kcal/mol (378.7817 without restraints) Performing minimization step: 4517. Total energy = 378.9880 kcal/mol (378.7737 without restraints) Performing minimization step: 4518. Total energy = 378.9759 kcal/mol (378.7610 without restraints) Performing minimization step: 4519. Total energy = 378.9673 kcal/mol (378.7530 without restraints) Performing minimization step: 4520. Total energy = 378.9551 kcal/mol (378.7403 without restraints) Performing minimization step: 4521. Total energy = 378.9466 kcal/mol (378.7323 without restraints) Performing minimization step: 4522. Total energy = 378.9344 kcal/mol (378.7196 without restraints) Performing minimization step: 4523. Total energy = 378.9259 kcal/mol (378.7116 without restraints) Performing minimization step: 4524. Total energy = 378.9137 kcal/mol (378.6988 without restraints) Performing minimization step: 4525. Total energy = 378.9051 kcal/mol (378.6909 without restraints) Performing minimization step: 4526. Total energy = 378.8930 kcal/mol (378.6782 without restraints) Performing minimization step: 4527. Total energy = 378.8843 kcal/mol (378.6700 without restraints) Performing minimization step: 4528. Total energy = 378.8722 kcal/mol (378.6574 without restraints) Performing minimization step: 4529. Total energy = 378.8637 kcal/mol (378.6495 without restraints) Performing minimization step: 4530. Total energy = 378.8517 kcal/mol (378.6369 without restraints) Performing minimization step: 4531. Total energy = 378.8434 kcal/mol (378.6291 without restraints) Performing minimization step: 4532. Total energy = 378.8313 kcal/mol (378.6165 without restraints) Performing minimization step: 4533. Total energy = 378.8228 kcal/mol (378.6086 without restraints) Performing minimization step: 4534. Total energy = 378.8108 kcal/mol (378.5960 without restraints) Performing minimization step: 4535. Total energy = 378.8024 kcal/mol (378.5881 without restraints) Performing minimization step: 4536. Total energy = 378.7903 kcal/mol (378.5756 without restraints) Performing minimization step: 4537. Total energy = 378.7819 kcal/mol (378.5677 without restraints) Performing minimization step: 4538. Total energy = 378.7699 kcal/mol (378.5551 without restraints) Performing minimization step: 4539. Total energy = 378.7615 kcal/mol (378.5473 without restraints) Performing minimization step: 4540. Total energy = 378.7495 kcal/mol (378.5347 without restraints) Performing minimization step: 4541. Total energy = 378.7411 kcal/mol (378.5269 without restraints) Performing minimization step: 4542. Total energy = 378.7292 kcal/mol (378.5144 without restraints) Performing minimization step: 4543. Total energy = 378.7208 kcal/mol (378.5066 without restraints) Performing minimization step: 4544. Total energy = 378.7090 kcal/mol (378.4943 without restraints) Performing minimization step: 4545. Total energy = 378.7007 kcal/mol (378.4865 without restraints) Performing minimization step: 4546. Total energy = 378.6888 kcal/mol (378.4740 without restraints) Performing minimization step: 4547. Total energy = 378.6804 kcal/mol (378.4662 without restraints) Performing minimization step: 4548. Total energy = 378.6685 kcal/mol (378.4537 without restraints) Performing minimization step: 4549. Total energy = 378.6604 kcal/mol (378.4461 without restraints) Performing minimization step: 4550. Total energy = 378.6484 kcal/mol (378.4337 without restraints) Performing minimization step: 4551. Total energy = 378.6401 kcal/mol (378.4259 without restraints) Performing minimization step: 4552. Total energy = 378.6282 kcal/mol (378.4134 without restraints) Performing minimization step: 4553. Total energy = 378.6199 kcal/mol (378.4057 without restraints) Performing minimization step: 4554. Total energy = 378.6079 kcal/mol (378.3932 without restraints) Performing minimization step: 4555. Total energy = 378.5996 kcal/mol (378.3854 without restraints) Performing minimization step: 4556. Total energy = 378.5877 kcal/mol (378.3730 without restraints) Performing minimization step: 4557. Total energy = 378.5794 kcal/mol (378.3653 without restraints) Performing minimization step: 4558. Total energy = 378.5676 kcal/mol (378.3528 without restraints) Performing minimization step: 4559. Total energy = 378.5589 kcal/mol (378.3447 without restraints) Performing minimization step: 4560. Total energy = 378.5471 kcal/mol (378.3324 without restraints) Performing minimization step: 4561. Total energy = 378.5388 kcal/mol (378.3246 without restraints) Performing minimization step: 4562. Total energy = 378.5269 kcal/mol (378.3120 without restraints) Performing minimization step: 4563. Total energy = 378.5187 kcal/mol (378.3045 without restraints) Performing minimization step: 4564. Total energy = 378.5069 kcal/mol (378.2922 without restraints) Performing minimization step: 4565. Total energy = 378.4986 kcal/mol (378.2844 without restraints) Performing minimization step: 4566. Total energy = 378.4865 kcal/mol (378.2716 without restraints) Performing minimization step: 4567. Total energy = 378.4781 kcal/mol (378.2639 without restraints) Performing minimization step: 4568. Total energy = 378.4663 kcal/mol (378.2516 without restraints) Performing minimization step: 4569. Total energy = 378.4581 kcal/mol (378.2440 without restraints) Performing minimization step: 4570. Total energy = 378.4464 kcal/mol (378.2317 without restraints) Performing minimization step: 4571. Total energy = 378.4382 kcal/mol (378.2240 without restraints) Performing minimization step: 4572. Total energy = 378.4264 kcal/mol (378.2117 without restraints) Performing minimization step: 4573. Total energy = 378.4182 kcal/mol (378.2041 without restraints) Performing minimization step: 4574. Total energy = 378.4064 kcal/mol (378.1917 without restraints) Performing minimization step: 4575. Total energy = 378.3983 kcal/mol (378.1841 without restraints) Performing minimization step: 4576. Total energy = 378.3865 kcal/mol (378.1718 without restraints) Performing minimization step: 4577. Total energy = 378.3785 kcal/mol (378.1643 without restraints) Performing minimization step: 4578. Total energy = 378.3667 kcal/mol (378.1521 without restraints) Performing minimization step: 4579. Total energy = 378.3586 kcal/mol (378.1445 without restraints) Performing minimization step: 4580. Total energy = 378.3468 kcal/mol (378.1320 without restraints) Performing minimization step: 4581. Total energy = 378.3388 kcal/mol (378.1247 without restraints) Performing minimization step: 4582. Total energy = 378.3274 kcal/mol (378.1127 without restraints) Performing minimization step: 4583. Total energy = 378.3192 kcal/mol (378.1051 without restraints) Performing minimization step: 4584. Total energy = 378.3075 kcal/mol (378.0927 without restraints) Performing minimization step: 4585. Total energy = 378.2995 kcal/mol (378.0853 without restraints) Performing minimization step: 4586. Total energy = 378.2876 kcal/mol (378.0729 without restraints) Performing minimization step: 4587. Total energy = 378.2796 kcal/mol (378.0655 without restraints) Performing minimization step: 4588. Total energy = 378.2678 kcal/mol (378.0532 without restraints) Performing minimization step: 4589. Total energy = 378.2598 kcal/mol (378.0457 without restraints) Performing minimization step: 4590. Total energy = 378.2481 kcal/mol (378.0335 without restraints) Performing minimization step: 4591. Total energy = 378.2401 kcal/mol (378.0259 without restraints) Performing minimization step: 4592. Total energy = 378.2285 kcal/mol (378.0140 without restraints) Performing minimization step: 4593. Total energy = 378.2208 kcal/mol (378.0067 without restraints) Performing minimization step: 4594. Total energy = 378.2092 kcal/mol (377.9945 without restraints) Performing minimization step: 4595. Total energy = 378.2011 kcal/mol (377.9870 without restraints) Performing minimization step: 4596. Total energy = 378.1895 kcal/mol (377.9749 without restraints) Performing minimization step: 4597. Total energy = 378.1816 kcal/mol (377.9674 without restraints) Performing minimization step: 4598. Total energy = 378.1701 kcal/mol (377.9556 without restraints) Performing minimization step: 4599. Total energy = 378.1623 kcal/mol (377.9482 without restraints) Performing minimization step: 4600. Total energy = 378.1507 kcal/mol (377.9361 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 378.1427 kcal/mol (377.9286 without restraints) Performing minimization step: 4602. Total energy = 378.1312 kcal/mol (377.9166 without restraints) Performing minimization step: 4603. Total energy = 378.1232 kcal/mol (377.9091 without restraints) Performing minimization step: 4604. Total energy = 378.1117 kcal/mol (377.8970 without restraints) Performing minimization step: 4605. Total energy = 378.1037 kcal/mol (377.8896 without restraints) Performing minimization step: 4606. Total energy = 378.0923 kcal/mol (377.8777 without restraints) Performing minimization step: 4607. Total energy = 378.0844 kcal/mol (377.8703 without restraints) Performing minimization step: 4608. Total energy = 378.0730 kcal/mol (377.8585 without restraints) Performing minimization step: 4609. Total energy = 378.0652 kcal/mol (377.8511 without restraints) Performing minimization step: 4610. Total energy = 378.0537 kcal/mol (377.8390 without restraints) Performing minimization step: 4611. Total energy = 378.0458 kcal/mol (377.8317 without restraints) Performing minimization step: 4612. Total energy = 378.0343 kcal/mol (377.8196 without restraints) Performing minimization step: 4613. Total energy = 378.0263 kcal/mol (377.8122 without restraints) Performing minimization step: 4614. Total energy = 378.0148 kcal/mol (377.8002 without restraints) Performing minimization step: 4615. Total energy = 378.0069 kcal/mol (377.7928 without restraints) Performing minimization step: 4616. Total energy = 377.9953 kcal/mol (377.7806 without restraints) Performing minimization step: 4617. Total energy = 377.9874 kcal/mol (377.7733 without restraints) Performing minimization step: 4618. Total energy = 377.9759 kcal/mol (377.7613 without restraints) Performing minimization step: 4619. Total energy = 377.9680 kcal/mol (377.7540 without restraints) Performing minimization step: 4620. Total energy = 377.9566 kcal/mol (377.7420 without restraints) Performing minimization step: 4621. Total energy = 377.9487 kcal/mol (377.7346 without restraints) Performing minimization step: 4622. Total energy = 377.9373 kcal/mol (377.7226 without restraints) Performing minimization step: 4623. Total energy = 377.9294 kcal/mol (377.7153 without restraints) Performing minimization step: 4624. Total energy = 377.9180 kcal/mol (377.7034 without restraints) Performing minimization step: 4625. Total energy = 377.9102 kcal/mol (377.6961 without restraints) Performing minimization step: 4626. Total energy = 377.8985 kcal/mol (377.6839 without restraints) Performing minimization step: 4627. Total energy = 377.8907 kcal/mol (377.6766 without restraints) Performing minimization step: 4628. Total energy = 377.8791 kcal/mol (377.6645 without restraints) Performing minimization step: 4629. Total energy = 377.8712 kcal/mol (377.6571 without restraints) Performing minimization step: 4630. Total energy = 377.8598 kcal/mol (377.6452 without restraints) Performing minimization step: 4631. Total energy = 377.8520 kcal/mol (377.6379 without restraints) Performing minimization step: 4632. Total energy = 377.8407 kcal/mol (377.6262 without restraints) Performing minimization step: 4633. Total energy = 377.8331 kcal/mol (377.6190 without restraints) Performing minimization step: 4634. Total energy = 377.8217 kcal/mol (377.6071 without restraints) Performing minimization step: 4635. Total energy = 377.8137 kcal/mol (377.5996 without restraints) Performing minimization step: 4636. Total energy = 377.8023 kcal/mol (377.5877 without restraints) Performing minimization step: 4637. Total energy = 377.7943 kcal/mol (377.5802 without restraints) Performing minimization step: 4638. Total energy = 377.7829 kcal/mol (377.5683 without restraints) Performing minimization step: 4639. Total energy = 377.7747 kcal/mol (377.5607 without restraints) Performing minimization step: 4640. Total energy = 377.7634 kcal/mol (377.5488 without restraints) Performing minimization step: 4641. Total energy = 377.7557 kcal/mol (377.5416 without restraints) Performing minimization step: 4642. Total energy = 377.7446 kcal/mol (377.5300 without restraints) Performing minimization step: 4643. Total energy = 377.7369 kcal/mol (377.5228 without restraints) Performing minimization step: 4644. Total energy = 377.7256 kcal/mol (377.5109 without restraints) Performing minimization step: 4645. Total energy = 377.7178 kcal/mol (377.5036 without restraints) Performing minimization step: 4646. Total energy = 377.7064 kcal/mol (377.4917 without restraints) Performing minimization step: 4647. Total energy = 377.6987 kcal/mol (377.4846 without restraints) Performing minimization step: 4648. Total energy = 377.6874 kcal/mol (377.4728 without restraints) Performing minimization step: 4649. Total energy = 377.6797 kcal/mol (377.4656 without restraints) Performing minimization step: 4650. Total energy = 377.6685 kcal/mol (377.4538 without restraints) Performing minimization step: 4651. Total energy = 377.6608 kcal/mol (377.4467 without restraints) Performing minimization step: 4652. Total energy = 377.6495 kcal/mol (377.4349 without restraints) Performing minimization step: 4653. Total energy = 377.6419 kcal/mol (377.4278 without restraints) Performing minimization step: 4654. Total energy = 377.6307 kcal/mol (377.4161 without restraints) Performing minimization step: 4655. Total energy = 377.6230 kcal/mol (377.4090 without restraints) Performing minimization step: 4656. Total energy = 377.6117 kcal/mol (377.3970 without restraints) Performing minimization step: 4657. Total energy = 377.6040 kcal/mol (377.3899 without restraints) Performing minimization step: 4658. Total energy = 377.5928 kcal/mol (377.3781 without restraints) Performing minimization step: 4659. Total energy = 377.5851 kcal/mol (377.3711 without restraints) Performing minimization step: 4660. Total energy = 377.5740 kcal/mol (377.3593 without restraints) Performing minimization step: 4661. Total energy = 377.5668 kcal/mol (377.3527 without restraints) Performing minimization step: 4662. Total energy = 377.5557 kcal/mol (377.3411 without restraints) Performing minimization step: 4663. Total energy = 377.5481 kcal/mol (377.3340 without restraints) Performing minimization step: 4664. Total energy = 377.5369 kcal/mol (377.3223 without restraints) Performing minimization step: 4665. Total energy = 377.5292 kcal/mol (377.3151 without restraints) Performing minimization step: 4666. Total energy = 377.5180 kcal/mol (377.3034 without restraints) Performing minimization step: 4667. Total energy = 377.5104 kcal/mol (377.2963 without restraints) Performing minimization step: 4668. Total energy = 377.4995 kcal/mol (377.2849 without restraints) Performing minimization step: 4669. Total energy = 377.4920 kcal/mol (377.2779 without restraints) Performing minimization step: 4670. Total energy = 377.4808 kcal/mol (377.2662 without restraints) Performing minimization step: 4671. Total energy = 377.4733 kcal/mol (377.2592 without restraints) Performing minimization step: 4672. Total energy = 377.4621 kcal/mol (377.2475 without restraints) Performing minimization step: 4673. Total energy = 377.4549 kcal/mol (377.2408 without restraints) Performing minimization step: 4674. Total energy = 377.4438 kcal/mol (377.2291 without restraints) Performing minimization step: 4675. Total energy = 377.4362 kcal/mol (377.2221 without restraints) Performing minimization step: 4676. Total energy = 377.4251 kcal/mol (377.2105 without restraints) Performing minimization step: 4677. Total energy = 377.4176 kcal/mol (377.2035 without restraints) Performing minimization step: 4678. Total energy = 377.4065 kcal/mol (377.1919 without restraints) Performing minimization step: 4679. Total energy = 377.3990 kcal/mol (377.1849 without restraints) Performing minimization step: 4680. Total energy = 377.3878 kcal/mol (377.1731 without restraints) Performing minimization step: 4681. Total energy = 377.3803 kcal/mol (377.1662 without restraints) Performing minimization step: 4682. Total energy = 377.3692 kcal/mol (377.1546 without restraints) Performing minimization step: 4683. Total energy = 377.3618 kcal/mol (377.1477 without restraints) Performing minimization step: 4684. Total energy = 377.3507 kcal/mol (377.1361 without restraints) Performing minimization step: 4685. Total energy = 377.3432 kcal/mol (377.1291 without restraints) Performing minimization step: 4686. Total energy = 377.3322 kcal/mol (377.1176 without restraints) Performing minimization step: 4687. Total energy = 377.3247 kcal/mol (377.1107 without restraints) Performing minimization step: 4688. Total energy = 377.3137 kcal/mol (377.0991 without restraints) Performing minimization step: 4689. Total energy = 377.3065 kcal/mol (377.0924 without restraints) Performing minimization step: 4690. Total energy = 377.2955 kcal/mol (377.0808 without restraints) Performing minimization step: 4691. Total energy = 377.2880 kcal/mol (377.0739 without restraints) Performing minimization step: 4692. Total energy = 377.2770 kcal/mol (377.0624 without restraints) Performing minimization step: 4693. Total energy = 377.2696 kcal/mol (377.0555 without restraints) Performing minimization step: 4694. Total energy = 377.2586 kcal/mol (377.0440 without restraints) Performing minimization step: 4695. Total energy = 377.2514 kcal/mol (377.0373 without restraints) Performing minimization step: 4696. Total energy = 377.2405 kcal/mol (377.0258 without restraints) Performing minimization step: 4697. Total energy = 377.2330 kcal/mol (377.0189 without restraints) Performing minimization step: 4698. Total energy = 377.2221 kcal/mol (377.0074 without restraints) Performing minimization step: 4699. Total energy = 377.2149 kcal/mol (377.0008 without restraints) Performing minimization step: 4700. Total energy = 377.2041 kcal/mol (376.9895 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 377.1970 kcal/mol (376.9829 without restraints) Performing minimization step: 4702. Total energy = 377.1862 kcal/mol (376.9717 without restraints) Performing minimization step: 4703. Total energy = 377.1790 kcal/mol (376.9648 without restraints) Performing minimization step: 4704. Total energy = 377.1678 kcal/mol (376.9532 without restraints) Performing minimization step: 4705. Total energy = 377.1608 kcal/mol (376.9467 without restraints) Performing minimization step: 4706. Total energy = 377.1501 kcal/mol (376.9355 without restraints) Performing minimization step: 4707. Total energy = 377.1431 kcal/mol (376.9291 without restraints) Performing minimization step: 4708. Total energy = 377.1321 kcal/mol (376.9174 without restraints) Performing minimization step: 4709. Total energy = 377.1247 kcal/mol (376.9106 without restraints) Performing minimization step: 4710. Total energy = 377.1138 kcal/mol (376.8991 without restraints) Performing minimization step: 4711. Total energy = 377.1069 kcal/mol (376.8928 without restraints) Performing minimization step: 4712. Total energy = 377.0961 kcal/mol (376.8814 without restraints) Performing minimization step: 4713. Total energy = 377.0888 kcal/mol (376.8746 without restraints) Performing minimization step: 4714. Total energy = 377.0779 kcal/mol (376.8632 without restraints) Performing minimization step: 4715. Total energy = 377.0706 kcal/mol (376.8565 without restraints) Performing minimization step: 4716. Total energy = 377.0598 kcal/mol (376.8451 without restraints) Performing minimization step: 4717. Total energy = 377.0525 kcal/mol (376.8383 without restraints) Performing minimization step: 4718. Total energy = 377.0416 kcal/mol (376.8269 without restraints) Performing minimization step: 4719. Total energy = 377.0343 kcal/mol (376.8202 without restraints) Performing minimization step: 4720. Total energy = 377.0235 kcal/mol (376.8088 without restraints) Performing minimization step: 4721. Total energy = 377.0162 kcal/mol (376.8021 without restraints) Performing minimization step: 4722. Total energy = 377.0056 kcal/mol (376.7909 without restraints) Performing minimization step: 4723. Total energy = 376.9984 kcal/mol (376.7842 without restraints) Performing minimization step: 4724. Total energy = 376.9873 kcal/mol (376.7727 without restraints) Performing minimization step: 4725. Total energy = 376.9803 kcal/mol (376.7662 without restraints) Performing minimization step: 4726. Total energy = 376.9693 kcal/mol (376.7547 without restraints) Performing minimization step: 4727. Total energy = 376.9621 kcal/mol (376.7480 without restraints) Performing minimization step: 4728. Total energy = 376.9513 kcal/mol (376.7366 without restraints) Performing minimization step: 4729. Total energy = 376.9443 kcal/mol (376.7302 without restraints) Performing minimization step: 4730. Total energy = 376.9336 kcal/mol (376.7189 without restraints) Performing minimization step: 4731. Total energy = 376.9264 kcal/mol (376.7122 without restraints) Performing minimization step: 4732. Total energy = 376.9156 kcal/mol (376.7009 without restraints) Performing minimization step: 4733. Total energy = 376.9084 kcal/mol (376.6943 without restraints) Performing minimization step: 4734. Total energy = 376.8977 kcal/mol (376.6830 without restraints) Performing minimization step: 4735. Total energy = 376.8906 kcal/mol (376.6764 without restraints) Performing minimization step: 4736. Total energy = 376.8796 kcal/mol (376.6649 without restraints) Performing minimization step: 4737. Total energy = 376.8724 kcal/mol (376.6583 without restraints) Performing minimization step: 4738. Total energy = 376.8617 kcal/mol (376.6470 without restraints) Performing minimization step: 4739. Total energy = 376.8546 kcal/mol (376.6404 without restraints) Performing minimization step: 4740. Total energy = 376.8439 kcal/mol (376.6291 without restraints) Performing minimization step: 4741. Total energy = 376.8365 kcal/mol (376.6223 without restraints) Performing minimization step: 4742. Total energy = 376.8258 kcal/mol (376.6111 without restraints) Performing minimization step: 4743. Total energy = 376.8187 kcal/mol (376.6045 without restraints) Performing minimization step: 4744. Total energy = 376.8080 kcal/mol (376.5933 without restraints) Performing minimization step: 4745. Total energy = 376.8011 kcal/mol (376.5871 without restraints) Performing minimization step: 4746. Total energy = 376.7906 kcal/mol (376.5759 without restraints) Performing minimization step: 4747. Total energy = 376.7835 kcal/mol (376.5693 without restraints) Performing minimization step: 4748. Total energy = 376.7730 kcal/mol (376.5583 without restraints) Performing minimization step: 4749. Total energy = 376.7659 kcal/mol (376.5517 without restraints) Performing minimization step: 4750. Total energy = 376.7553 kcal/mol (376.5405 without restraints) Performing minimization step: 4751. Total energy = 376.7482 kcal/mol (376.5340 without restraints) Performing minimization step: 4752. Total energy = 376.7373 kcal/mol (376.5226 without restraints) Performing minimization step: 4753. Total energy = 376.7302 kcal/mol (376.5160 without restraints) Performing minimization step: 4754. Total energy = 376.7196 kcal/mol (376.5048 without restraints) Performing minimization step: 4755. Total energy = 376.7125 kcal/mol (376.4983 without restraints) Performing minimization step: 4756. Total energy = 376.7019 kcal/mol (376.4871 without restraints) Performing minimization step: 4757. Total energy = 376.6948 kcal/mol (376.4806 without restraints) Performing minimization step: 4758. Total energy = 376.6842 kcal/mol (376.4695 without restraints) Performing minimization step: 4759. Total energy = 376.6772 kcal/mol (376.4630 without restraints) Performing minimization step: 4760. Total energy = 376.6666 kcal/mol (376.4518 without restraints) Performing minimization step: 4761. Total energy = 376.6600 kcal/mol (376.4457 without restraints) Performing minimization step: 4762. Total energy = 376.6496 kcal/mol (376.4348 without restraints) Performing minimization step: 4763. Total energy = 376.6426 kcal/mol (376.4283 without restraints) Performing minimization step: 4764. Total energy = 376.6320 kcal/mol (376.4172 without restraints) Performing minimization step: 4765. Total energy = 376.6252 kcal/mol (376.4110 without restraints) Performing minimization step: 4766. Total energy = 376.6147 kcal/mol (376.3999 without restraints) Performing minimization step: 4767. Total energy = 376.6076 kcal/mol (376.3934 without restraints) Performing minimization step: 4768. Total energy = 376.5971 kcal/mol (376.3823 without restraints) Performing minimization step: 4769. Total energy = 376.5901 kcal/mol (376.3758 without restraints) Performing minimization step: 4770. Total energy = 376.5796 kcal/mol (376.3648 without restraints) Performing minimization step: 4771. Total energy = 376.5726 kcal/mol (376.3583 without restraints) Performing minimization step: 4772. Total energy = 376.5620 kcal/mol (376.3472 without restraints) Performing minimization step: 4773. Total energy = 376.5551 kcal/mol (376.3408 without restraints) Performing minimization step: 4774. Total energy = 376.5444 kcal/mol (376.3296 without restraints) Performing minimization step: 4775. Total energy = 376.5374 kcal/mol (376.3231 without restraints) Performing minimization step: 4776. Total energy = 376.5265 kcal/mol (376.3117 without restraints) Performing minimization step: 4777. Total energy = 376.5195 kcal/mol (376.3053 without restraints) Performing minimization step: 4778. Total energy = 376.5088 kcal/mol (376.2940 without restraints) Performing minimization step: 4779. Total energy = 376.5019 kcal/mol (376.2876 without restraints) Performing minimization step: 4780. Total energy = 376.4914 kcal/mol (376.2766 without restraints) Performing minimization step: 4781. Total energy = 376.4847 kcal/mol (376.2704 without restraints) Performing minimization step: 4782. Total energy = 376.4742 kcal/mol (376.2594 without restraints) Performing minimization step: 4783. Total energy = 376.4671 kcal/mol (376.2527 without restraints) Performing minimization step: 4784. Total energy = 376.4571 kcal/mol (376.2422 without restraints) Performing minimization step: 4785. Total energy = 376.4499 kcal/mol (376.2355 without restraints) Performing minimization step: 4786. Total energy = 376.4396 kcal/mol (376.2247 without restraints) Performing minimization step: 4787. Total energy = 376.4326 kcal/mol (376.2183 without restraints) Performing minimization step: 4788. Total energy = 376.4222 kcal/mol (376.2074 without restraints) Performing minimization step: 4789. Total energy = 376.4151 kcal/mol (376.2008 without restraints) Performing minimization step: 4790. Total energy = 376.4046 kcal/mol (376.1899 without restraints) Performing minimization step: 4791. Total energy = 376.3977 kcal/mol (376.1834 without restraints) Performing minimization step: 4792. Total energy = 376.3873 kcal/mol (376.1724 without restraints) Performing minimization step: 4793. Total energy = 376.3804 kcal/mol (376.1661 without restraints) Performing minimization step: 4794. Total energy = 376.3700 kcal/mol (376.1551 without restraints) Performing minimization step: 4795. Total energy = 376.3631 kcal/mol (376.1488 without restraints) Performing minimization step: 4796. Total energy = 376.3527 kcal/mol (376.1379 without restraints) Performing minimization step: 4797. Total energy = 376.3459 kcal/mol (376.1315 without restraints) Performing minimization step: 4798. Total energy = 376.3355 kcal/mol (376.1206 without restraints) Performing minimization step: 4799. Total energy = 376.3287 kcal/mol (376.1143 without restraints) Performing minimization step: 4800. Total energy = 376.3183 kcal/mol (376.1035 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 376.3114 kcal/mol (376.0969 without restraints) Performing minimization step: 4802. Total energy = 376.3007 kcal/mol (376.0859 without restraints) Performing minimization step: 4803. Total energy = 376.2939 kcal/mol (376.0796 without restraints) Performing minimization step: 4804. Total energy = 376.2836 kcal/mol (376.0687 without restraints) Performing minimization step: 4805. Total energy = 376.2767 kcal/mol (376.0624 without restraints) Performing minimization step: 4806. Total energy = 376.2664 kcal/mol (376.0515 without restraints) Performing minimization step: 4807. Total energy = 376.2603 kcal/mol (376.0459 without restraints) Performing minimization step: 4808. Total energy = 376.2498 kcal/mol (376.0348 without restraints) Performing minimization step: 4809. Total energy = 376.2428 kcal/mol (376.0286 without restraints) Performing minimization step: 4810. Total energy = 376.2324 kcal/mol (376.0175 without restraints) Performing minimization step: 4811. Total energy = 376.2256 kcal/mol (376.0112 without restraints) Performing minimization step: 4812. Total energy = 376.2153 kcal/mol (376.0004 without restraints) Performing minimization step: 4813. Total energy = 376.2086 kcal/mol (375.9942 without restraints) Performing minimization step: 4814. Total energy = 376.1983 kcal/mol (375.9834 without restraints) Performing minimization step: 4815. Total energy = 376.1916 kcal/mol (375.9771 without restraints) Performing minimization step: 4816. Total energy = 376.1815 kcal/mol (375.9666 without restraints) Performing minimization step: 4817. Total energy = 376.1747 kcal/mol (375.9603 without restraints) Performing minimization step: 4818. Total energy = 376.1644 kcal/mol (375.9494 without restraints) Performing minimization step: 4819. Total energy = 376.1576 kcal/mol (375.9432 without restraints) Performing minimization step: 4820. Total energy = 376.1474 kcal/mol (375.9324 without restraints) Performing minimization step: 4821. Total energy = 376.1407 kcal/mol (375.9262 without restraints) Performing minimization step: 4822. Total energy = 376.1304 kcal/mol (375.9155 without restraints) Performing minimization step: 4823. Total energy = 376.1237 kcal/mol (375.9093 without restraints) Performing minimization step: 4824. Total energy = 376.1137 kcal/mol (375.8987 without restraints) Performing minimization step: 4825. Total energy = 376.1070 kcal/mol (375.8925 without restraints) Performing minimization step: 4826. Total energy = 376.0967 kcal/mol (375.8818 without restraints) Performing minimization step: 4827. Total energy = 376.0900 kcal/mol (375.8756 without restraints) Performing minimization step: 4828. Total energy = 376.0796 kcal/mol (375.8646 without restraints) Performing minimization step: 4829. Total energy = 376.0729 kcal/mol (375.8585 without restraints) Performing minimization step: 4830. Total energy = 376.0628 kcal/mol (375.8478 without restraints) Performing minimization step: 4831. Total energy = 376.0563 kcal/mol (375.8418 without restraints) Performing minimization step: 4832. Total energy = 376.0461 kcal/mol (375.8311 without restraints) Performing minimization step: 4833. Total energy = 376.0394 kcal/mol (375.8249 without restraints) Performing minimization step: 4834. Total energy = 376.0292 kcal/mol (375.8142 without restraints) Performing minimization step: 4835. Total energy = 376.0226 kcal/mol (375.8081 without restraints) Performing minimization step: 4836. Total energy = 376.0124 kcal/mol (375.7974 without restraints) Performing minimization step: 4837. Total energy = 376.0057 kcal/mol (375.7912 without restraints) Performing minimization step: 4838. Total energy = 375.9956 kcal/mol (375.7805 without restraints) Performing minimization step: 4839. Total energy = 375.9889 kcal/mol (375.7744 without restraints) Performing minimization step: 4840. Total energy = 375.9788 kcal/mol (375.7637 without restraints) Performing minimization step: 4841. Total energy = 375.9721 kcal/mol (375.7576 without restraints) Performing minimization step: 4842. Total energy = 375.9620 kcal/mol (375.7470 without restraints) Performing minimization step: 4843. Total energy = 375.9554 kcal/mol (375.7408 without restraints) Performing minimization step: 4844. Total energy = 375.9454 kcal/mol (375.7304 without restraints) Performing minimization step: 4845. Total energy = 375.9388 kcal/mol (375.7243 without restraints) Performing minimization step: 4846. Total energy = 375.9287 kcal/mol (375.7136 without restraints) Performing minimization step: 4847. Total energy = 375.9223 kcal/mol (375.7077 without restraints) Performing minimization step: 4848. Total energy = 375.9122 kcal/mol (375.6971 without restraints) Performing minimization step: 4849. Total energy = 375.9056 kcal/mol (375.6910 without restraints) Performing minimization step: 4850. Total energy = 375.8955 kcal/mol (375.6804 without restraints) Performing minimization step: 4851. Total energy = 375.8889 kcal/mol (375.6743 without restraints) Performing minimization step: 4852. Total energy = 375.8788 kcal/mol (375.6637 without restraints) Performing minimization step: 4853. Total energy = 375.8722 kcal/mol (375.6576 without restraints) Performing minimization step: 4854. Total energy = 375.8621 kcal/mol (375.6470 without restraints) Performing minimization step: 4855. Total energy = 375.8555 kcal/mol (375.6410 without restraints) Performing minimization step: 4856. Total energy = 375.8455 kcal/mol (375.6303 without restraints) Performing minimization step: 4857. Total energy = 375.8388 kcal/mol (375.6241 without restraints) Performing minimization step: 4858. Total energy = 375.8289 kcal/mol (375.6137 without restraints) Performing minimization step: 4859. Total energy = 375.8221 kcal/mol (375.6075 without restraints) Performing minimization step: 4860. Total energy = 375.8122 kcal/mol (375.5971 without restraints) Performing minimization step: 4861. Total energy = 375.8055 kcal/mol (375.5909 without restraints) Performing minimization step: 4862. Total energy = 375.7955 kcal/mol (375.5803 without restraints) Performing minimization step: 4863. Total energy = 375.7889 kcal/mol (375.5743 without restraints) Performing minimization step: 4864. Total energy = 375.7789 kcal/mol (375.5638 without restraints) Performing minimization step: 4865. Total energy = 375.7724 kcal/mol (375.5578 without restraints) Performing minimization step: 4866. Total energy = 375.7624 kcal/mol (375.5473 without restraints) Performing minimization step: 4867. Total energy = 375.7559 kcal/mol (375.5413 without restraints) Performing minimization step: 4868. Total energy = 375.7457 kcal/mol (375.5305 without restraints) Performing minimization step: 4869. Total energy = 375.7391 kcal/mol (375.5245 without restraints) Performing minimization step: 4870. Total energy = 375.7292 kcal/mol (375.5140 without restraints) Performing minimization step: 4871. Total energy = 375.7227 kcal/mol (375.5080 without restraints) Performing minimization step: 4872. Total energy = 375.7127 kcal/mol (375.4975 without restraints) Performing minimization step: 4873. Total energy = 375.7062 kcal/mol (375.4915 without restraints) Performing minimization step: 4874. Total energy = 375.6962 kcal/mol (375.4811 without restraints) Performing minimization step: 4875. Total energy = 375.6898 kcal/mol (375.4751 without restraints) Performing minimization step: 4876. Total energy = 375.6798 kcal/mol (375.4646 without restraints) Performing minimization step: 4877. Total energy = 375.6733 kcal/mol (375.4587 without restraints) Performing minimization step: 4878. Total energy = 375.6634 kcal/mol (375.4482 without restraints) Performing minimization step: 4879. Total energy = 375.6569 kcal/mol (375.4422 without restraints) Performing minimization step: 4880. Total energy = 375.6470 kcal/mol (375.4318 without restraints) Performing minimization step: 4881. Total energy = 375.6405 kcal/mol (375.4258 without restraints) Performing minimization step: 4882. Total energy = 375.6306 kcal/mol (375.4154 without restraints) Performing minimization step: 4883. Total energy = 375.6242 kcal/mol (375.4095 without restraints) Performing minimization step: 4884. Total energy = 375.6143 kcal/mol (375.3990 without restraints) Performing minimization step: 4885. Total energy = 375.6078 kcal/mol (375.3931 without restraints) Performing minimization step: 4886. Total energy = 375.5981 kcal/mol (375.3829 without restraints) Performing minimization step: 4887. Total energy = 375.5915 kcal/mol (375.3768 without restraints) Performing minimization step: 4888. Total energy = 375.5814 kcal/mol (375.3661 without restraints) Performing minimization step: 4889. Total energy = 375.5748 kcal/mol (375.3601 without restraints) Performing minimization step: 4890. Total energy = 375.5651 kcal/mol (375.3499 without restraints) Performing minimization step: 4891. Total energy = 375.5585 kcal/mol (375.3438 without restraints) Performing minimization step: 4892. Total energy = 375.5486 kcal/mol (375.3334 without restraints) Performing minimization step: 4893. Total energy = 375.5421 kcal/mol (375.3273 without restraints) Performing minimization step: 4894. Total energy = 375.5324 kcal/mol (375.3171 without restraints) Performing minimization step: 4895. Total energy = 375.5261 kcal/mol (375.3113 without restraints) Performing minimization step: 4896. Total energy = 375.5162 kcal/mol (375.3009 without restraints) Performing minimization step: 4897. Total energy = 375.5101 kcal/mol (375.2953 without restraints) Performing minimization step: 4898. Total energy = 375.5004 kcal/mol (375.2852 without restraints) Performing minimization step: 4899. Total energy = 375.4938 kcal/mol (375.2790 without restraints) Performing minimization step: 4900. Total energy = 375.4843 kcal/mol (375.2689 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 375.4774 kcal/mol (375.2626 without restraints) Performing minimization step: 4902. Total energy = 375.4679 kcal/mol (375.2525 without restraints) Performing minimization step: 4903. Total energy = 375.4615 kcal/mol (375.2467 without restraints) Performing minimization step: 4904. Total energy = 375.4516 kcal/mol (375.2363 without restraints) Performing minimization step: 4905. Total energy = 375.4453 kcal/mol (375.2305 without restraints) Performing minimization step: 4906. Total energy = 375.4350 kcal/mol (375.2197 without restraints) Performing minimization step: 4907. Total energy = 375.4287 kcal/mol (375.2139 without restraints) Performing minimization step: 4908. Total energy = 375.4189 kcal/mol (375.2035 without restraints) Performing minimization step: 4909. Total energy = 375.4126 kcal/mol (375.1978 without restraints) Performing minimization step: 4910. Total energy = 375.4028 kcal/mol (375.1874 without restraints) Performing minimization step: 4911. Total energy = 375.3965 kcal/mol (375.1817 without restraints) Performing minimization step: 4912. Total energy = 375.3867 kcal/mol (375.1713 without restraints) Performing minimization step: 4913. Total energy = 375.3807 kcal/mol (375.1658 without restraints) Performing minimization step: 4914. Total energy = 375.3709 kcal/mol (375.1555 without restraints) Performing minimization step: 4915. Total energy = 375.3646 kcal/mol (375.1497 without restraints) Performing minimization step: 4916. Total energy = 375.3549 kcal/mol (375.1394 without restraints) Performing minimization step: 4917. Total energy = 375.3486 kcal/mol (375.1337 without restraints) Performing minimization step: 4918. Total energy = 375.3388 kcal/mol (375.1234 without restraints) Performing minimization step: 4919. Total energy = 375.3326 kcal/mol (375.1176 without restraints) Performing minimization step: 4920. Total energy = 375.3228 kcal/mol (375.1074 without restraints) Performing minimization step: 4921. Total energy = 375.3167 kcal/mol (375.1018 without restraints) Performing minimization step: 4922. Total energy = 375.3070 kcal/mol (375.0915 without restraints) Performing minimization step: 4923. Total energy = 375.3007 kcal/mol (375.0858 without restraints) Performing minimization step: 4924. Total energy = 375.2908 kcal/mol (375.0754 without restraints) Performing minimization step: 4925. Total energy = 375.2845 kcal/mol (375.0696 without restraints) Performing minimization step: 4926. Total energy = 375.2748 kcal/mol (375.0594 without restraints) Performing minimization step: 4927. Total energy = 375.2686 kcal/mol (375.0536 without restraints) Performing minimization step: 4928. Total energy = 375.2589 kcal/mol (375.0434 without restraints) Performing minimization step: 4929. Total energy = 375.2524 kcal/mol (375.0375 without restraints) Performing minimization step: 4930. Total energy = 375.2428 kcal/mol (375.0273 without restraints) Performing minimization step: 4931. Total energy = 375.2365 kcal/mol (375.0214 without restraints) Performing minimization step: 4932. Total energy = 375.2271 kcal/mol (375.0116 without restraints) Performing minimization step: 4933. Total energy = 375.2208 kcal/mol (375.0058 without restraints) Performing minimization step: 4934. Total energy = 375.2112 kcal/mol (374.9957 without restraints) Performing minimization step: 4935. Total energy = 375.2051 kcal/mol (374.9901 without restraints) Performing minimization step: 4936. Total energy = 375.1955 kcal/mol (374.9800 without restraints) Performing minimization step: 4937. Total energy = 375.1893 kcal/mol (374.9743 without restraints) Performing minimization step: 4938. Total energy = 375.1797 kcal/mol (374.9641 without restraints) Performing minimization step: 4939. Total energy = 375.1737 kcal/mol (374.9588 without restraints) Performing minimization step: 4940. Total energy = 375.1642 kcal/mol (374.9487 without restraints) Performing minimization step: 4941. Total energy = 375.1580 kcal/mol (374.9430 without restraints) Performing minimization step: 4942. Total energy = 375.1486 kcal/mol (374.9330 without restraints) Performing minimization step: 4943. Total energy = 375.1424 kcal/mol (374.9274 without restraints) Performing minimization step: 4944. Total energy = 375.1326 kcal/mol (374.9170 without restraints) Performing minimization step: 4945. Total energy = 375.1264 kcal/mol (374.9114 without restraints) Performing minimization step: 4946. Total energy = 375.1168 kcal/mol (374.9013 without restraints) Performing minimization step: 4947. Total energy = 375.1107 kcal/mol (374.8956 without restraints) Performing minimization step: 4948. Total energy = 375.1011 kcal/mol (374.8855 without restraints) Performing minimization step: 4949. Total energy = 375.0949 kcal/mol (374.8798 without restraints) Performing minimization step: 4950. Total energy = 375.0854 kcal/mol (374.8697 without restraints) Performing minimization step: 4951. Total energy = 375.0792 kcal/mol (374.8641 without restraints) Performing minimization step: 4952. Total energy = 375.0696 kcal/mol (374.8540 without restraints) Performing minimization step: 4953. Total energy = 375.0635 kcal/mol (374.8484 without restraints) Performing minimization step: 4954. Total energy = 375.0538 kcal/mol (374.8381 without restraints) Performing minimization step: 4955. Total energy = 375.0476 kcal/mol (374.8325 without restraints) Performing minimization step: 4956. Total energy = 375.0381 kcal/mol (374.8225 without restraints) Performing minimization step: 4957. Total energy = 375.0320 kcal/mol (374.8168 without restraints) Performing minimization step: 4958. Total energy = 375.0224 kcal/mol (374.8068 without restraints) Performing minimization step: 4959. Total energy = 375.0163 kcal/mol (374.8012 without restraints) Performing minimization step: 4960. Total energy = 375.0068 kcal/mol (374.7911 without restraints) Performing minimization step: 4961. Total energy = 375.0007 kcal/mol (374.7855 without restraints) Performing minimization step: 4962. Total energy = 374.9911 kcal/mol (374.7754 without restraints) Performing minimization step: 4963. Total energy = 374.9848 kcal/mol (374.7697 without restraints) Performing minimization step: 4964. Total energy = 374.9749 kcal/mol (374.7592 without restraints) Performing minimization step: 4965. Total energy = 374.9690 kcal/mol (374.7538 without restraints) Performing minimization step: 4966. Total energy = 374.9597 kcal/mol (374.7440 without restraints) Performing minimization step: 4967. Total energy = 374.9536 kcal/mol (374.7384 without restraints) Performing minimization step: 4968. Total energy = 374.9445 kcal/mol (374.7288 without restraints) Performing minimization step: 4969. Total energy = 374.9386 kcal/mol (374.7234 without restraints) Performing minimization step: 4970. Total energy = 374.9291 kcal/mol (374.7134 without restraints) Performing minimization step: 4971. Total energy = 374.9231 kcal/mol (374.7078 without restraints) Performing minimization step: 4972. Total energy = 374.9136 kcal/mol (374.6978 without restraints) Performing minimization step: 4973. Total energy = 374.9075 kcal/mol (374.6923 without restraints) Performing minimization step: 4974. Total energy = 374.8981 kcal/mol (374.6823 without restraints) Performing minimization step: 4975. Total energy = 374.8920 kcal/mol (374.6768 without restraints) Performing minimization step: 4976. Total energy = 374.8826 kcal/mol (374.6668 without restraints) Performing minimization step: 4977. Total energy = 374.8766 kcal/mol (374.6613 without restraints) Performing minimization step: 4978. Total energy = 374.8672 kcal/mol (374.6514 without restraints) Performing minimization step: 4979. Total energy = 374.8611 kcal/mol (374.6458 without restraints) Performing minimization step: 4980. Total energy = 374.8518 kcal/mol (374.6361 without restraints) Performing minimization step: 4981. Total energy = 374.8459 kcal/mol (374.6306 without restraints) Performing minimization step: 4982. Total energy = 374.8365 kcal/mol (374.6207 without restraints) Performing minimization step: 4983. Total energy = 374.8304 kcal/mol (374.6151 without restraints) Performing minimization step: 4984. Total energy = 374.8210 kcal/mol (374.6052 without restraints) Performing minimization step: 4985. Total energy = 374.8150 kcal/mol (374.5997 without restraints) Performing minimization step: 4986. Total energy = 374.8056 kcal/mol (374.5898 without restraints) Performing minimization step: 4987. Total energy = 374.7996 kcal/mol (374.5843 without restraints) Performing minimization step: 4988. Total energy = 374.7902 kcal/mol (374.5744 without restraints) Performing minimization step: 4989. Total energy = 374.7842 kcal/mol (374.5689 without restraints) Performing minimization step: 4990. Total energy = 374.7749 kcal/mol (374.5590 without restraints) Performing minimization step: 4991. Total energy = 374.7689 kcal/mol (374.5535 without restraints) Performing minimization step: 4992. Total energy = 374.7595 kcal/mol (374.5436 without restraints) Performing minimization step: 4993. Total energy = 374.7535 kcal/mol (374.5381 without restraints) Performing minimization step: 4994. Total energy = 374.7442 kcal/mol (374.5282 without restraints) Performing minimization step: 4995. Total energy = 374.7382 kcal/mol (374.5228 without restraints) Performing minimization step: 4996. Total energy = 374.7288 kcal/mol (374.5129 without restraints) Performing minimization step: 4997. Total energy = 374.7228 kcal/mol (374.5074 without restraints) Performing minimization step: 4998. Total energy = 374.7135 kcal/mol (374.4976 without restraints) Performing minimization step: 4999. Total energy = 374.7075 kcal/mol (374.4921 without restraints) Performing minimization step: 5000. Total energy = 374.6982 kcal/mol (374.4823 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6c02d588/tmp/ClusterCentersModel-1.R_000997_refx/ClusterCentersModel-1.R_000997_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to ClusterCentersModel-1.R_000997_refx.pdb DONE!