============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 737 'H5' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 741 1H2' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 742 2H2' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 767 'H5' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 771 1H2' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 772 2H2' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 799 'H5' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 803 1H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 804 2H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 829 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 833 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 856 C5M DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 860 HN3 DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 861 1HM5 DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 862 2HM5 DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 863 3HM5 DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 888 'H5' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 892 1H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 893 2H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 921 'H5' DG A 30 ... failed. Atom erased. Error: recognition of atom ATOM 925 1H2' DG A 30 ... failed. Atom erased. Error: recognition of atom ATOM 926 2H2' DG A 30 ... failed. Atom erased. Error: recognition of atom ATOM 948 C5M DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 952 HN3 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 953 1HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 954 2HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 955 3HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 980 'H5' DC A 32 ... failed. Atom erased. Error: recognition of atom ATOM 984 1H2' DC A 32 ... failed. Atom erased. Error: recognition of atom ATOM 985 2H2' DC A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1012 'H5' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1016 1H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1017 2H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1044 'H5' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1048 1H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1049 2H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1077 'H5' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1081 1H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1082 2H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1110 'H5' DG A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1114 1H2' DG A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1115 2H2' DG A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1143 'H5' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1147 1H2' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1148 2H2' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1173 'H5' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1177 1H2' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1178 2H2' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1206 'H5' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1210 1H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1211 2H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1233 C5M DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1237 HN3 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1238 1HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1239 2HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1240 3HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1265 'H5' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1269 1H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1270 2H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1292 C5M DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1296 HN3 DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1297 1HM5 DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1298 2HM5 DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1299 3HM5 DT A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1321 C5M DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1325 HN3 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1326 1HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1327 2HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1328 3HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1353 'H5' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1357 1H2' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1358 2H2' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1386 'H5' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1390 1H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1391 2H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1419 'H5' DG A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1423 1H2' DG A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1424 2H2' DG A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1452 'H5' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1456 1H2' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1457 2H2' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1484 'H5' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1488 1H2' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1489 2H2' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1516 'H5' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1520 1H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1521 2H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1543 C5M DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1547 HN3 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1548 1HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1549 2HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1550 3HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1572 C5M DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1576 HN3 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1577 1HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1578 2HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1579 3HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1604 'H5' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1608 1H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1609 2H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1636 'H5' DA A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1640 1H2' DA A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1641 2H2' DA A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1663 C5M DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1667 HN3 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1668 1HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1669 2HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1670 3HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1698 'H5' DG A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1702 1H2' DG A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1703 2H2' DG A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1728 'H5' DC A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1732 1H2' DC A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1733 2H2' DC A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1755 C5M DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1759 HN3 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1760 1HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1761 2HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1762 3HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1789 'H5' DA A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1793 1H2' DA A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1794 2H2' DA A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1816 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1820 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1821 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1822 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1823 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1851 'H5' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1855 1H2' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1856 2H2' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1878 C5M DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1882 HN3 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1883 1HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1884 2HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1885 3HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1910 'H5' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1914 1H2' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1915 2H2' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1943 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1947 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1948 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1975 'H5' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1979 1H2' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1980 2H2' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2005 'H5' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2009 1H2' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2010 2H2' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2038 'H5' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2042 1H2' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2043 2H2' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2070 'H5' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2074 1H2' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2075 2H2' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2103 'H5' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2107 1H2' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2108 2H2' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2136 'H5' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2140 1H2' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2141 2H2' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2163 C5M DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2167 HN3 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2168 1HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2169 2HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2170 3HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2195 'H5' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2199 1H2' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2200 2H2' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2222 C5M DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2226 HN3 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2227 1HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2228 2HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2229 3HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2256 'H5' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2260 1H2' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2261 2H2' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2289 'H5' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2293 1H2' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2294 2H2' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2321 'H5' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2325 1H2' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2326 2H2' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2353 'H5' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2357 1H2' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2358 2H2' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2380 C5M DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2384 HN3 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2385 1HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2386 2HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2387 3HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2414 'H5' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2418 1H2' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2419 2H2' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2444 'H5' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2448 1H2' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2449 2H2' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2474 'H5' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2478 1H2' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2479 2H2' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2506 'H5' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2510 1H2' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2511 2H2' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2539 'H5' DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2540 'HO3 DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2544 1H2' DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2545 2H2' DG A 82 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.362 0.382 -2.710 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.840 -0.718 -0.422 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 1.365 0.382 3.841 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 -0.589 0.003 3.644 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.304 -3.954 4.762 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.760 -3.054 6.756 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.474 -4.595 7.555 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -7.168 -1.506 4.491 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.609 -1.951 1.632 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.674 -0.970 1.167 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.143 -2.682 1.027 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.566 -2.245 1.725 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -3.818 -7.869 7.565 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.769 -6.759 9.187 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.486 -7.034 7.342 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -9.359 -10.684 7.872 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.394 -9.144 7.289 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -13.113 -9.507 5.343 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -14.433 -13.108 5.076 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -16.997 -11.471 1.989 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.507 -11.900 0.727 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -17.103 -15.459 0.021 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -18.301 -13.982 -3.846 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -16.451 -14.468 -4.427 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -17.502 -17.843 -5.523 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -14.059 -15.709 -7.972 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -14.512 -16.809 -9.268 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -10.180 -14.591 -6.699 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -12.334 -16.465 -3.100 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -12.070 -15.677 -2.391 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -11.610 -17.280 -3.013 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -13.327 -16.847 -2.852 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -14.265 -19.970 -10.723 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -11.096 -18.140 -13.061 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -9.803 -18.895 -11.737 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -9.147 -22.251 -13.509 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -5.120 -20.730 -13.723 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -4.825 -21.585 -11.940 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -3.557 -24.950 -13.315 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 0.097 -23.601 -11.432 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -0.589 -24.449 -9.757 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 1.063 -27.835 -10.701 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 1.152 -26.463 -6.167 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 2.419 -27.668 -5.978 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -2.266 -25.684 -3.677 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -3.705 -27.095 -7.782 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -4.485 -26.343 -7.880 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -4.131 -28.014 -7.381 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -3.263 -27.293 -8.756 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 3.399 -31.003 -5.758 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 0.990 -29.945 -1.831 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 1.987 -31.168 -1.054 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -3.088 -28.558 -1.579 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -2.352 -30.355 -5.726 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -2.773 -29.539 -6.314 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -3.121 -31.112 -5.557 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -1.523 -30.803 -6.276 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 2.239 -34.648 -0.375 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -0.259 -33.878 3.147 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -1.788 -34.483 2.011 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -1.421 -38.216 3.287 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -5.359 -37.261 5.115 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -6.099 -37.688 3.308 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -6.655 -41.628 4.071 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -10.888 -40.542 3.418 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -10.468 -40.712 1.471 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -11.571 -44.561 1.744 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -15.197 -43.548 -0.356 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -14.120 -43.827 -2.017 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -14.972 -47.444 -2.582 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -16.679 -45.865 -6.235 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -14.883 -46.182 -7.054 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -15.614 -49.748 -8.315 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -14.983 -47.924 -12.178 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -13.044 -48.347 -11.935 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -13.118 -51.836 -13.610 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -10.484 -49.975 -16.391 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -8.978 -50.504 -15.186 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -8.395 -53.801 -16.962 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -4.682 -51.900 -18.023 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -3.931 -52.671 -16.338 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 -2.407 -55.914 -17.885 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 1.186 -54.574 -15.645 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 0.388 -55.422 -14.020 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 2.692 -58.588 -15.127 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 5.283 -57.076 -11.790 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 3.924 -57.885 -10.567 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 3.564 -61.731 -9.851 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 5.325 -60.436 -6.413 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 3.505 -61.193 -6.078 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 24 3.524 -64.616 -4.429 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 24 -0.588 -63.754 -2.605 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 24 -1.250 -64.817 -4.163 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 25 -1.925 -68.271 -3.432 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 25 -4.344 -67.393 0.728 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 25 -5.491 -68.148 -0.725 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 26 -5.894 -71.845 -0.737 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 26 -9.658 -70.015 -2.582 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 26 -8.917 -70.626 -4.335 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 -10.712 -75.379 -1.757 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 -7.864 -75.762 -5.454 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 -7.399 -77.143 -4.085 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 28 -10.701 -80.579 -6.017 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 28 -8.818 -81.643 -1.410 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 28 -8.922 -83.371 -1.721 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 28 -5.593 -80.020 1.125 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 28 -8.656 -76.843 -0.106 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 28 -7.963 -76.105 -0.500 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 28 -8.879 -76.621 0.936 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 28 -9.574 -76.835 -0.687 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 29 -14.106 -83.759 -2.881 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 29 -12.573 -80.409 0.028 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 29 -11.940 -80.118 -1.846 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 30 -14.937 -77.413 -3.058 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 30 -17.935 -76.825 -5.683 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 30 -18.486 -76.979 -3.767 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 31 -17.642 -72.193 -3.836 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 31 -19.663 -72.858 -1.434 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 31 -20.978 -71.709 -1.223 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 31 -25.085 -74.551 -1.736 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 31 -21.355 -77.211 -2.311 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 31 -21.762 -77.870 -3.079 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 31 -21.498 -77.671 -1.330 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 31 -20.288 -77.070 -2.488 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 32 -20.789 -66.919 -0.363 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 32 -21.386 -64.059 -1.741 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 32 -20.913 -63.150 -0.025 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 33 -18.063 -64.174 -2.460 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 33 -15.876 -66.285 -4.735 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 33 -17.371 -67.291 -3.869 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 34 -18.937 -61.361 -7.306 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 34 -16.729 -58.919 -8.927 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 34 -18.176 -57.836 -8.073 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 35 -13.744 -60.371 -6.248 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 35 -11.589 -64.017 -4.591 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 35 -10.799 -63.654 -6.391 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 36 -10.159 -60.295 -1.822 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 36 -8.286 -61.623 1.967 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 36 -6.642 -60.943 1.053 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 37 -5.590 -57.899 0.139 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 37 -1.845 -58.241 1.700 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 37 -1.820 -57.586 -0.188 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 38 -0.909 -53.400 1.259 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 38 3.174 -54.339 -0.797 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 38 2.170 -54.158 -2.516 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 39 3.155 -49.834 -2.167 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 39 5.113 -50.505 -5.927 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 39 3.334 -50.102 -6.746 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 40 4.577 -46.412 -6.796 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 40 2.355 -48.097 -10.663 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 40 3.065 -46.693 -11.451 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 40 -1.681 -49.792 -10.548 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 40 -0.639 -48.748 -6.218 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 40 -0.856 -49.724 -5.784 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 40 -1.517 -48.105 -6.117 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 40 0.198 -48.296 -5.683 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 41 2.623 -43.214 -12.491 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 41 -0.601 -44.516 -15.267 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 41 -1.907 -44.302 -13.769 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 42 -1.986 -40.320 -15.101 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 42 -6.228 -42.269 -14.976 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 42 -6.762 -40.853 -15.872 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 42 -7.819 -44.434 -11.461 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 42 -3.704 -42.630 -10.505 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 42 -3.300 -43.522 -10.037 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 42 -4.114 -41.965 -9.749 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 42 -2.929 -42.120 -11.067 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 43 -8.145 -37.856 -16.166 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 43 -11.229 -40.157 -13.471 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 43 -12.286 -38.802 -13.845 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 43 -10.249 -42.130 -9.730 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 43 -6.558 -39.775 -11.065 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 43 -5.828 -40.563 -10.883 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 43 -6.614 -39.123 -10.191 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 43 -6.251 -39.190 -11.931 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 44 -13.206 -35.457 -13.080 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 44 -15.806 -37.264 -10.060 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 44 -14.348 -36.885 -8.745 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 45 -16.092 -33.310 -8.037 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 45 -17.433 -34.828 -4.236 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 45 -15.634 -34.268 -3.568 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 46 -16.625 -30.868 -2.377 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 46 -15.511 -32.620 1.419 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 46 -13.675 -31.924 1.047 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 47 -14.096 -28.582 2.815 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 47 -10.960 -30.147 5.341 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 47 -9.671 -29.330 4.049 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 48 -9.338 -25.920 5.804 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 48 -5.224 -27.113 6.233 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 48 -4.921 -26.256 4.452 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 49 -3.994 -22.782 5.832 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 49 -0.180 -23.835 4.077 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 49 -0.873 -23.046 2.376 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 50 0.465 -19.534 3.374 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 50 0.834 -20.868 -1.154 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 50 2.007 -19.563 -1.289 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 50 -2.425 -22.077 -3.719 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 50 -4.130 -20.633 0.260 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 50 -4.816 -21.465 0.394 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 50 -4.649 -19.799 -0.210 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 50 -3.735 -20.321 1.223 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 51 2.726 -16.154 -1.455 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 51 0.585 -17.364 -5.498 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 51 1.508 -16.055 -6.227 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 51 -3.358 -19.184 -5.848 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 51 -2.939 -17.267 -1.707 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 51 -3.244 -18.130 -1.111 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 51 -3.811 -16.630 -1.885 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 51 -2.193 -16.696 -1.148 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 52 1.256 -12.500 -6.801 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 52 -1.237 -13.381 -10.253 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 52 -2.791 -12.980 -9.061 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 53 -2.613 -9.151 -10.266 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 53 -6.111 -9.895 -12.687 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 53 -7.142 -9.538 -11.012 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 54 -7.522 -5.950 -11.768 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 54 -11.023 -8.058 -9.398 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 54 -12.014 -6.736 -10.004 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 54 -10.924 -9.668 -5.434 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 54 -6.667 -8.271 -6.464 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 54 -6.169 -9.196 -6.163 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 54 -6.626 -7.559 -5.634 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 54 -6.136 -7.846 -7.319 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 55 -13.144 -3.516 -9.781 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 55 -16.427 -5.464 -7.655 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 55 -15.479 -5.001 -5.956 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 56 -17.049 -1.486 -5.260 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 56 -18.349 -3.430 -1.567 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 56 -16.543 -2.961 -0.851 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 57 -18.071 0.618 0.334 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 57 -15.365 -0.929 3.721 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 57 -16.161 0.275 4.727 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 57 -11.178 -2.658 2.918 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 57 -12.615 -0.159 -0.674 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 57 -12.416 -0.914 -1.436 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 57 -11.751 0.506 -0.593 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 57 -13.488 0.426 -0.969 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 58 -15.733 3.467 6.001 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 58 -13.077 2.200 9.243 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 58 -11.655 2.494 7.868 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 -11.451 5.838 9.652 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 -7.048 4.684 8.387 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 -6.620 5.972 9.506 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 -6.183 4.287 4.079 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 -10.703 3.641 4.407 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 -10.755 2.648 3.964 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 -10.864 4.395 3.637 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 -11.465 3.738 5.177 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 60 -6.078 9.395 9.173 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 60 -3.320 9.157 5.682 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 60 -4.863 9.906 4.655 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 61 -6.250 12.695 9.067 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 61 -5.398 15.412 7.130 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 61 -5.027 16.985 7.826 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 61 0.092 17.753 7.127 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 61 -1.563 14.275 4.562 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 61 -0.689 13.613 4.616 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 61 -1.487 14.871 3.641 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 61 -2.462 13.650 4.491 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 62 -7.297 16.267 14.082 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 62 -5.729 16.910 18.159 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 62 -4.800 18.426 17.247 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -6.800 21.644 16.444 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 -5.138 22.989 18.846 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 -4.117 23.531 17.214 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 64 -5.013 27.255 17.825 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 64 -1.342 29.168 17.808 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 64 -1.696 29.242 15.842 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 65 -3.183 32.803 15.866 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 65 0.205 33.552 13.032 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 65 -1.071 32.974 11.606 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 66 -2.114 36.562 10.353 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 66 -0.799 34.724 6.358 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 66 -2.626 33.930 6.196 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 67 -1.852 38.285 4.816 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 67 -3.883 37.104 1.576 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 67 -4.674 38.669 2.537 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 68 -3.018 41.365 0.579 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 68 -3.553 44.180 -2.567 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 68 -1.969 43.237 -3.341 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 69 -1.244 40.391 -4.786 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 69 -1.023 43.670 -7.879 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 69 0.713 42.687 -8.002 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 70 -0.388 41.200 -11.269 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 70 3.929 41.350 -12.175 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 70 3.441 41.062 -13.840 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 70 6.957 39.621 -9.322 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 70 2.710 38.868 -7.738 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 70 2.846 39.232 -6.717 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 70 2.855 37.783 -7.751 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 70 1.689 39.090 -8.059 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 71 2.887 38.600 -16.154 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 71 7.231 37.918 -16.780 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 71 6.973 36.496 -15.399 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 72 6.383 33.667 -18.101 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 72 8.318 32.326 -13.877 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 72 8.363 30.725 -14.606 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 72 6.899 32.257 -9.992 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 72 3.751 34.234 -12.781 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 72 3.509 35.068 -12.114 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 72 3.021 33.432 -12.617 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 72 3.660 34.579 -13.817 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 73 6.135 29.320 -15.406 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 73 7.604 26.152 -17.188 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 73 8.830 27.730 -17.241 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 74 6.485 25.326 -12.360 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 74 8.643 25.860 -8.928 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 74 7.427 27.368 -9.422 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 75 4.483 28.258 -7.536 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 75 2.973 28.034 -4.995 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 75 4.862 27.809 -4.380 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 76 7.533 30.668 -3.201 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 76 11.943 29.232 -3.570 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 76 12.067 30.457 -5.146 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 77 13.156 33.497 -3.612 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 77 13.299 33.813 -8.408 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 77 14.680 34.871 -8.145 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 77 9.738 34.934 -10.580 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 77 8.282 33.374 -6.508 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 77 7.637 32.585 -6.870 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 77 7.716 34.284 -6.346 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 77 8.779 33.070 -5.596 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 78 16.718 37.877 -6.977 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 78 14.779 39.115 -11.167 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 78 13.290 40.002 -10.171 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 79 12.961 42.757 -8.146 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 79 9.767 44.441 -10.315 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 79 9.169 44.197 -8.423 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 80 8.852 47.903 -6.865 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 80 5.620 48.437 -9.365 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 80 5.198 48.470 -7.411 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 81 5.385 53.379 -7.458 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 81 0.948 52.215 -6.467 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 81 1.576 51.743 -4.629 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 82 0.056 55.253 -3.523 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 82 -2.265 52.520 -0.601 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 82 -0.658 52.417 0.583 1.00 0.00 H Number of atoms: 2603 Number of residues: 82 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2810 Number of angles built: 5101 Number of dihedrals built: 7623 Number of impropers built: 557 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3378592 Number of van der Waals pairs: 286419 Number of H-bonds built: 66 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 20 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 219959.2243 kcal/mol (219424.7244 without restraints) Performing minimization step: 2. Total energy = 215699.4077 kcal/mol (215183.9704 without restraints) Performing minimization step: 3. Total energy = 211596.4594 kcal/mol (211099.0003 without restraints) Performing minimization step: 4. Total energy = 207641.5170 kcal/mol (207161.0276 without restraints) Performing minimization step: 5. Total energy = 203826.3390 kcal/mol (203361.8813 without restraints) Performing minimization step: 6. Total energy = 200143.2576 kcal/mol (199693.9587 without restraints) Performing minimization step: 7. Total energy = 196585.1348 kcal/mol (196150.1820 without restraints) Performing minimization step: 8. Total energy = 193145.3218 kcal/mol (192723.9578 without restraints) Performing minimization step: 9. Total energy = 189817.6225 kcal/mol (189409.1415 without restraints) Performing minimization step: 10. Total energy = 186596.2592 kcal/mol (186200.0025 without restraints) Performing minimization step: 11. Total energy = 183475.8402 kcal/mol (183091.1934 without restraints) Performing minimization step: 12. Total energy = 180451.3322 kcal/mol (180077.7211 without restraints) Performing minimization step: 13. Total energy = 177518.0326 kcal/mol (177154.9208 without restraints) Performing minimization step: 14. Total energy = 174671.5452 kcal/mol (174318.4311 without restraints) Performing minimization step: 15. Total energy = 171907.7576 kcal/mol (171564.1717 without restraints) Performing minimization step: 16. Total energy = 169222.8195 kcal/mol (168888.3222 without restraints) Performing minimization step: 17. Total energy = 166613.1252 kcal/mol (166287.3044 without restraints) Performing minimization step: 18. Total energy = 164075.2929 kcal/mol (163757.7624 without restraints) Performing minimization step: 19. Total energy = 161606.1508 kcal/mol (161296.5478 without restraints) Performing minimization step: 20. Total energy = 159202.7204 kcal/mol (158900.7043 without restraints) Performing minimization step: 21. Total energy = 156862.2036 kcal/mol (156567.4543 without restraints) Performing minimization step: 22. Total energy = 154581.9690 kcal/mol (154294.1854 without restraints) Performing minimization step: 23. Total energy = 152359.5404 kcal/mol (152078.4389 without restraints) Performing minimization step: 24. Total energy = 150192.5855 kcal/mol (149917.8990 without restraints) Performing minimization step: 25. Total energy = 148078.9062 kcal/mol (147810.3828 without restraints) Performing minimization step: 26. Total energy = 146016.4287 kcal/mol (145753.8306 without restraints) Performing minimization step: 27. Total energy = 144003.1955 kcal/mol (143746.2983 without restraints) Performing minimization step: 28. Total energy = 142037.3565 kcal/mol (141785.9478 without restraints) Performing minimization step: 29. Total energy = 140117.1627 kcal/mol (139871.0418 without restraints) Performing minimization step: 30. Total energy = 138240.9590 kcal/mol (137999.9359 without restraints) Performing minimization step: 31. Total energy = 136407.1772 kcal/mol (136171.0717 without restraints) Performing minimization step: 32. Total energy = 134614.3314 kcal/mol (134382.9729 without restraints) Performing minimization step: 33. Total energy = 132861.0119 kcal/mol (132634.2382 without restraints) Performing minimization step: 34. Total energy = 131145.8804 kcal/mol (130923.5376 without restraints) Performing minimization step: 35. Total energy = 129467.6652 kcal/mol (129249.6069 without restraints) Performing minimization step: 36. Total energy = 127825.1572 kcal/mol (127611.2444 without restraints) Performing minimization step: 37. Total energy = 126217.2059 kcal/mol (126007.3060 without restraints) Performing minimization step: 38. Total energy = 124642.7156 kcal/mol (124436.7025 without restraints) Performing minimization step: 39. Total energy = 123100.6422 kcal/mol (122898.3955 without restraints) Performing minimization step: 40. Total energy = 121589.9898 kcal/mol (121391.3948 without restraints) Performing minimization step: 41. Total energy = 120109.8082 kcal/mol (119914.7552 without restraints) Performing minimization step: 42. Total energy = 118659.1896 kcal/mol (118467.5739 without restraints) Performing minimization step: 43. Total energy = 117237.2664 kcal/mol (117048.9880 without restraints) Performing minimization step: 44. Total energy = 115843.2092 kcal/mol (115658.1722 without restraints) Performing minimization step: 45. Total energy = 114476.2237 kcal/mol (114294.3365 without restraints) Performing minimization step: 46. Total energy = 113135.5497 kcal/mol (112956.7243 without restraints) Performing minimization step: 47. Total energy = 111820.4581 kcal/mol (111644.6105 without restraints) Performing minimization step: 48. Total energy = 110530.2505 kcal/mol (110357.2998 without restraints) Performing minimization step: 49. Total energy = 109264.2563 kcal/mol (109094.1251 without restraints) Performing minimization step: 50. Total energy = 108021.8319 kcal/mol (107854.4457 without restraints) Performing minimization step: 51. Total energy = 106802.3583 kcal/mol (106637.6455 without restraints) Performing minimization step: 52. Total energy = 105605.2418 kcal/mol (105443.1335 without restraints) Performing minimization step: 53. Total energy = 104429.9101 kcal/mol (104270.3403 without restraints) Performing minimization step: 54. Total energy = 103275.8129 kcal/mol (103118.7176 without restraints) Performing minimization step: 55. Total energy = 102142.4203 kcal/mol (101987.7385 without restraints) Performing minimization step: 56. Total energy = 101029.2221 kcal/mol (100876.8944 without restraints) Performing minimization step: 57. Total energy = 99935.7258 kcal/mol (99785.6953 without restraints) Performing minimization step: 58. Total energy = 98861.4569 kcal/mol (98713.6685 without restraints) Performing minimization step: 59. Total energy = 97805.9574 kcal/mol (97660.3580 without restraints) Performing minimization step: 60. Total energy = 96768.7850 kcal/mol (96625.3233 without restraints) Performing minimization step: 61. Total energy = 95749.5127 kcal/mol (95608.1392 without restraints) Performing minimization step: 62. Total energy = 94747.7280 kcal/mol (94608.3947 without restraints) Performing minimization step: 63. Total energy = 93763.0313 kcal/mol (93625.6920 without restraints) Performing minimization step: 64. Total energy = 92795.0365 kcal/mol (92659.6464 without restraints) Performing minimization step: 65. Total energy = 91843.3704 kcal/mol (91709.8860 without restraints) Performing minimization step: 66. Total energy = 90907.6711 kcal/mol (90776.0504 without restraints) Performing minimization step: 67. Total energy = 89987.5884 kcal/mol (89857.7908 without restraints) Performing minimization step: 68. Total energy = 89082.7830 kcal/mol (88954.7690 without restraints) Performing minimization step: 69. Total energy = 88192.9256 kcal/mol (88066.6570 without restraints) Performing minimization step: 70. Total energy = 87317.6971 kcal/mol (87193.1368 without restraints) Performing minimization step: 71. Total energy = 86456.7882 kcal/mol (86333.9002 without restraints) Performing minimization step: 72. Total energy = 85609.8985 kcal/mol (85488.6479 without restraints) Performing minimization step: 73. Total energy = 84776.7361 kcal/mol (84657.0889 without restraints) Performing minimization step: 74. Total energy = 83957.0178 kcal/mol (83838.9411 without restraints) Performing minimization step: 75. Total energy = 83150.4683 kcal/mol (83033.9301 without restraints) Performing minimization step: 76. Total energy = 82356.8202 kcal/mol (82241.7893 without restraints) Performing minimization step: 77. Total energy = 81575.8132 kcal/mol (81462.2593 without restraints) Performing minimization step: 78. Total energy = 80807.1949 kcal/mol (80695.0887 without restraints) Performing minimization step: 79. Total energy = 80050.7187 kcal/mol (79940.0314 without restraints) Performing minimization step: 80. Total energy = 79306.1452 kcal/mol (79196.8491 without restraints) Performing minimization step: 81. Total energy = 78573.2413 kcal/mol (78465.3091 without restraints) Performing minimization step: 82. Total energy = 77851.7802 kcal/mol (77745.1855 without restraints) Performing minimization step: 83. Total energy = 77141.5407 kcal/mol (77036.2577 without restraints) Performing minimization step: 84. Total energy = 76442.3072 kcal/mol (76338.3109 without restraints) Performing minimization step: 85. Total energy = 75753.8699 kcal/mol (75651.1356 without restraints) Performing minimization step: 86. Total energy = 75076.0239 kcal/mol (74974.5281 without restraints) Performing minimization step: 87. Total energy = 74408.5697 kcal/mol (74308.2890 without restraints) Performing minimization step: 88. Total energy = 73751.3132 kcal/mol (73652.2248 without restraints) Performing minimization step: 89. Total energy = 73104.0636 kcal/mol (73006.1455 without restraints) Performing minimization step: 90. Total energy = 72466.6360 kcal/mol (72369.8665 without restraints) Performing minimization step: 91. Total energy = 71838.8494 kcal/mol (71743.2074 without restraints) Performing minimization step: 92. Total energy = 71220.5274 kcal/mol (71125.9923 without restraints) Performing minimization step: 93. Total energy = 70611.4973 kcal/mol (70518.0490 without restraints) Performing minimization step: 94. Total energy = 70011.5903 kcal/mol (69919.2092 without restraints) Performing minimization step: 95. Total energy = 69420.6423 kcal/mol (69329.3091 without restraints) Performing minimization step: 96. Total energy = 68838.4922 kcal/mol (68748.1882 without restraints) Performing minimization step: 97. Total energy = 68264.9829 kcal/mol (68175.6897 without restraints) Performing minimization step: 98. Total energy = 67699.9608 kcal/mol (67611.6605 without restraints) Performing minimization step: 99. Total energy = 67143.2758 kcal/mol (67055.9509 without restraints) Performing minimization step: 100. Total energy = 66594.7804 kcal/mol (66508.4137 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 101. Total energy = 66054.3315 kcal/mol (65968.9062 without restraints) Performing minimization step: 102. Total energy = 65521.7882 kcal/mol (65437.2881 without restraints) Performing minimization step: 103. Total energy = 64997.0132 kcal/mol (64913.4220 without restraints) Performing minimization step: 104. Total energy = 64479.8716 kcal/mol (64397.1737 without restraints) Performing minimization step: 105. Total energy = 63970.2316 kcal/mol (63888.4116 without restraints) Performing minimization step: 106. Total energy = 63467.9649 kcal/mol (63387.0076 without restraints) Performing minimization step: 107. Total energy = 62972.9443 kcal/mol (62892.8352 without restraints) Performing minimization step: 108. Total energy = 62485.0467 kcal/mol (62405.7711 without restraints) Performing minimization step: 109. Total energy = 62004.1507 kcal/mol (61925.6946 without restraints) Performing minimization step: 110. Total energy = 61530.1377 kcal/mol (61452.4873 without restraints) Performing minimization step: 111. Total energy = 61062.8916 kcal/mol (60986.0332 without restraints) Performing minimization step: 112. Total energy = 60602.2984 kcal/mol (60526.2187 without restraints) Performing minimization step: 113. Total energy = 60148.2459 kcal/mol (60072.9319 without restraints) Performing minimization step: 114. Total energy = 59700.6260 kcal/mol (59626.0649 without restraints) Performing minimization step: 115. Total energy = 59259.3312 kcal/mol (59185.5106 without restraints) Performing minimization step: 116. Total energy = 58824.2559 kcal/mol (58751.1634 without restraints) Performing minimization step: 117. Total energy = 58395.2972 kcal/mol (58322.9207 without restraints) Performing minimization step: 118. Total energy = 57972.3539 kcal/mol (57900.6816 without restraints) Performing minimization step: 119. Total energy = 57555.3269 kcal/mol (57484.3473 without restraints) Performing minimization step: 120. Total energy = 57144.1192 kcal/mol (57073.8210 without restraints) Performing minimization step: 121. Total energy = 56738.6355 kcal/mol (56669.0074 without restraints) Performing minimization step: 122. Total energy = 56338.7821 kcal/mol (56269.8132 without restraints) Performing minimization step: 123. Total energy = 55944.4674 kcal/mol (55876.1470 without restraints) Performing minimization step: 124. Total energy = 55555.6013 kcal/mol (55487.9190 without restraints) Performing minimization step: 125. Total energy = 55172.0954 kcal/mol (55105.0407 without restraints) Performing minimization step: 126. Total energy = 54793.8631 kcal/mol (54727.4259 without restraints) Performing minimization step: 127. Total energy = 54420.8194 kcal/mol (54354.9898 without restraints) Performing minimization step: 128. Total energy = 54052.8807 kcal/mol (53987.6488 without restraints) Performing minimization step: 129. Total energy = 53689.9649 kcal/mol (53625.3213 without restraints) Performing minimization step: 130. Total energy = 53331.9915 kcal/mol (53267.9267 without restraints) Performing minimization step: 131. Total energy = 52978.8816 kcal/mol (52915.3864 without restraints) Performing minimization step: 132. Total energy = 52630.5577 kcal/mol (52567.6229 without restraints) Performing minimization step: 133. Total energy = 52286.9432 kcal/mol (52224.5600 without restraints) Performing minimization step: 134. Total energy = 51947.9634 kcal/mol (51886.1231 without restraints) Performing minimization step: 135. Total energy = 51613.5449 kcal/mol (51552.2388 without restraints) Performing minimization step: 136. Total energy = 51283.6154 kcal/mol (51222.8351 without restraints) Performing minimization step: 137. Total energy = 50958.1040 kcal/mol (50897.8412 without restraints) Performing minimization step: 138. Total energy = 50636.9411 kcal/mol (50577.1876 without restraints) Performing minimization step: 139. Total energy = 50320.0582 kcal/mol (50260.8060 without restraints) Performing minimization step: 140. Total energy = 50007.3878 kcal/mol (49948.6291 without restraints) Performing minimization step: 141. Total energy = 49698.8641 kcal/mol (49640.5911 without restraints) Performing minimization step: 142. Total energy = 49394.4222 kcal/mol (49336.6274 without restraints) Performing minimization step: 143. Total energy = 49093.9983 kcal/mol (49036.6741 without restraints) Performing minimization step: 144. Total energy = 48797.5296 kcal/mol (48740.6688 without restraints) Performing minimization step: 145. Total energy = 48504.9545 kcal/mol (48448.5498 without restraints) Performing minimization step: 146. Total energy = 48216.2126 kcal/mol (48160.2569 without restraints) Performing minimization step: 147. Total energy = 47931.2441 kcal/mol (47875.7305 without restraints) Performing minimization step: 148. Total energy = 47649.9904 kcal/mol (47594.9120 without restraints) Performing minimization step: 149. Total energy = 47372.3944 kcal/mol (47317.7445 without restraints) Performing minimization step: 150. Total energy = 47098.3989 kcal/mol (47044.1709 without restraints) Performing minimization step: 151. Total energy = 46827.9484 kcal/mol (46774.1357 without restraints) Performing minimization step: 152. Total energy = 46560.9887 kcal/mol (46507.5851 without restraints) Performing minimization step: 153. Total energy = 46297.4659 kcal/mol (46244.4649 without restraints) Performing minimization step: 154. Total energy = 46037.3270 kcal/mol (45984.7226 without restraints) Performing minimization step: 155. Total energy = 45780.5203 kcal/mol (45728.3063 without restraints) Performing minimization step: 156. Total energy = 45526.9944 kcal/mol (45475.1649 without restraints) Performing minimization step: 157. Total energy = 45276.6992 kcal/mol (45225.2482 without restraints) Performing minimization step: 158. Total energy = 45029.5852 kcal/mol (44978.5070 without restraints) Performing minimization step: 159. Total energy = 44785.6038 kcal/mol (44734.8927 without restraints) Performing minimization step: 160. Total energy = 44544.7075 kcal/mol (44494.3579 without restraints) Performing minimization step: 161. Total energy = 44306.8487 kcal/mol (44256.8552 without restraints) Performing minimization step: 162. Total energy = 44071.9815 kcal/mol (44022.3385 without restraints) Performing minimization step: 163. Total energy = 43840.0604 kcal/mol (43790.7627 without restraints) Performing minimization step: 164. Total energy = 43611.0404 kcal/mol (43562.0828 without restraints) Performing minimization step: 165. Total energy = 43384.8780 kcal/mol (43336.2552 without restraints) Performing minimization step: 166. Total energy = 43161.5295 kcal/mol (43113.2366 without restraints) Performing minimization step: 167. Total energy = 42940.9525 kcal/mol (42892.9844 without restraints) Performing minimization step: 168. Total energy = 42723.1050 kcal/mol (42675.4568 without restraints) Performing minimization step: 169. Total energy = 42507.9457 kcal/mol (42460.6126 without restraints) Performing minimization step: 170. Total energy = 42295.4347 kcal/mol (42248.4120 without restraints) Performing minimization step: 171. Total energy = 42085.5310 kcal/mol (42038.8140 without restraints) Performing minimization step: 172. Total energy = 41878.1959 kcal/mol (41831.7799 without restraints) Performing minimization step: 173. Total energy = 41673.3906 kcal/mol (41627.2712 without restraints) Performing minimization step: 174. Total energy = 41471.0773 kcal/mol (41425.2500 without restraints) Performing minimization step: 175. Total energy = 41271.2184 kcal/mol (41225.6789 without restraints) Performing minimization step: 176. Total energy = 41073.7771 kcal/mol (41028.5210 without restraints) Performing minimization step: 177. Total energy = 40878.7174 kcal/mol (40833.7406 without restraints) Performing minimization step: 178. Total energy = 40686.0036 kcal/mol (40641.3018 without restraints) Performing minimization step: 179. Total energy = 40495.6005 kcal/mol (40451.1696 without restraints) Performing minimization step: 180. Total energy = 40307.4740 kcal/mol (40263.3100 without restraints) Performing minimization step: 181. Total energy = 40121.5894 kcal/mol (40077.6884 without restraints) Performing minimization step: 182. Total energy = 39937.9138 kcal/mol (39894.2717 without restraints) Performing minimization step: 183. Total energy = 39756.4140 kcal/mol (39713.0271 without restraints) Performing minimization step: 184. Total energy = 39577.0579 kcal/mol (39533.9223 without restraints) Performing minimization step: 185. Total energy = 39399.8135 kcal/mol (39356.9257 without restraints) Performing minimization step: 186. Total energy = 39224.6493 kcal/mol (39182.0054 without restraints) Performing minimization step: 187. Total energy = 39051.5347 kcal/mol (39009.1311 without restraints) Performing minimization step: 188. Total energy = 38880.4392 kcal/mol (38838.2724 without restraints) Performing minimization step: 189. Total energy = 38711.3328 kcal/mol (38669.3994 without restraints) Performing minimization step: 190. Total energy = 38544.1865 kcal/mol (38502.4829 without restraints) Performing minimization step: 191. Total energy = 38378.9707 kcal/mol (38337.4936 without restraints) Performing minimization step: 192. Total energy = 38215.6565 kcal/mol (38174.4025 without restraints) Performing minimization step: 193. Total energy = 38054.2172 kcal/mol (38013.1830 without restraints) Performing minimization step: 194. Total energy = 37894.6244 kcal/mol (37853.8069 without restraints) Performing minimization step: 195. Total energy = 37736.8510 kcal/mol (37696.2470 without restraints) Performing minimization step: 196. Total energy = 37580.8703 kcal/mol (37540.4765 without restraints) Performing minimization step: 197. Total energy = 37426.6559 kcal/mol (37386.4694 without restraints) Performing minimization step: 198. Total energy = 37274.1817 kcal/mol (37234.1994 without restraints) Performing minimization step: 199. Total energy = 37123.4222 kcal/mol (37083.6411 without restraints) Performing minimization step: 200. Total energy = 36974.3523 kcal/mol (36934.7694 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 201. Total energy = 36826.9470 kcal/mol (36787.5595 without restraints) Performing minimization step: 202. Total energy = 36681.1825 kcal/mol (36641.9875 without restraints) Performing minimization step: 203. Total energy = 36537.0343 kcal/mol (36498.0289 without restraints) Performing minimization step: 204. Total energy = 36394.4791 kcal/mol (36355.6607 without restraints) Performing minimization step: 205. Total energy = 36253.4938 kcal/mol (36214.8597 without restraints) Performing minimization step: 206. Total energy = 36114.0551 kcal/mol (36075.6025 without restraints) Performing minimization step: 207. Total energy = 35976.1406 kcal/mol (35937.8669 without restraints) Performing minimization step: 208. Total energy = 35839.7282 kcal/mol (35801.6308 without restraints) Performing minimization step: 209. Total energy = 35704.7959 kcal/mol (35666.8723 without restraints) Performing minimization step: 210. Total energy = 35571.3224 kcal/mol (35533.5700 without restraints) Performing minimization step: 211. Total energy = 35439.2863 kcal/mol (35401.7027 without restraints) Performing minimization step: 212. Total energy = 35308.6668 kcal/mol (35271.2495 without restraints) Performing minimization step: 213. Total energy = 35179.4436 kcal/mol (35142.1903 without restraints) Performing minimization step: 214. Total energy = 35051.5967 kcal/mol (35014.5048 without restraints) Performing minimization step: 215. Total energy = 34925.1050 kcal/mol (34888.1725 without restraints) Performing minimization step: 216. Total energy = 34799.9504 kcal/mol (34763.1749 without restraints) Performing minimization step: 217. Total energy = 34676.1131 kcal/mol (34639.4923 without restraints) Performing minimization step: 218. Total energy = 34553.5737 kcal/mol (34517.1053 without restraints) Performing minimization step: 219. Total energy = 34432.3139 kcal/mol (34395.9958 without restraints) Performing minimization step: 220. Total energy = 34312.3148 kcal/mol (34276.1446 without restraints) Performing minimization step: 221. Total energy = 34193.5590 kcal/mol (34157.5350 without restraints) Performing minimization step: 222. Total energy = 34076.0284 kcal/mol (34040.1484 without restraints) Performing minimization step: 223. Total energy = 33959.7054 kcal/mol (33923.9673 without restraints) Performing minimization step: 224. Total energy = 33844.5727 kcal/mol (33808.9745 without restraints) Performing minimization step: 225. Total energy = 33730.6130 kcal/mol (33695.1527 without restraints) Performing minimization step: 226. Total energy = 33617.8098 kcal/mol (33582.4854 without restraints) Performing minimization step: 227. Total energy = 33506.1465 kcal/mol (33470.9560 without restraints) Performing minimization step: 228. Total energy = 33395.6067 kcal/mol (33360.5483 without restraints) Performing minimization step: 229. Total energy = 33286.1749 kcal/mol (33251.2467 without restraints) Performing minimization step: 230. Total energy = 33177.8350 kcal/mol (33143.0352 without restraints) Performing minimization step: 231. Total energy = 33070.5713 kcal/mol (33035.8980 without restraints) Performing minimization step: 232. Total energy = 32964.3686 kcal/mol (32929.8200 without restraints) Performing minimization step: 233. Total energy = 32859.2121 kcal/mol (32824.7865 without restraints) Performing minimization step: 234. Total energy = 32755.0868 kcal/mol (32720.7825 without restraints) Performing minimization step: 235. Total energy = 32651.9777 kcal/mol (32617.7930 without restraints) Performing minimization step: 236. Total energy = 32549.8712 kcal/mol (32515.8043 without restraints) Performing minimization step: 237. Total energy = 32448.7524 kcal/mol (32414.8018 without restraints) Performing minimization step: 238. Total energy = 32348.6080 kcal/mol (32314.7720 without restraints) Performing minimization step: 239. Total energy = 32249.4239 kcal/mol (32215.7009 without restraints) Performing minimization step: 240. Total energy = 32151.1867 kcal/mol (32117.5751 without restraints) Performing minimization step: 241. Total energy = 32053.8831 kcal/mol (32020.3814 without restraints) Performing minimization step: 242. Total energy = 31957.4998 kcal/mol (31924.1064 without restraints) Performing minimization step: 243. Total energy = 31862.0241 kcal/mol (31828.7376 without restraints) Performing minimization step: 244. Total energy = 31767.4432 kcal/mol (31734.2620 without restraints) Performing minimization step: 245. Total energy = 31673.7446 kcal/mol (31640.6672 without restraints) Performing minimization step: 246. Total energy = 31580.9160 kcal/mol (31547.9411 without restraints) Performing minimization step: 247. Total energy = 31488.9450 kcal/mol (31456.0710 without restraints) Performing minimization step: 248. Total energy = 31397.8201 kcal/mol (31365.0458 without restraints) Performing minimization step: 249. Total energy = 31307.5290 kcal/mol (31274.8529 without restraints) Performing minimization step: 250. Total energy = 31218.0605 kcal/mol (31185.4813 without restraints) Performing minimization step: 251. Total energy = 31129.4028 kcal/mol (31096.9192 without restraints) Performing minimization step: 252. Total energy = 31041.5449 kcal/mol (31009.1556 without restraints) Performing minimization step: 253. Total energy = 30954.4763 kcal/mol (30922.1798 without restraints) Performing minimization step: 254. Total energy = 30868.1852 kcal/mol (30835.9804 without restraints) Performing minimization step: 255. Total energy = 30782.6614 kcal/mol (30750.5470 without restraints) Performing minimization step: 256. Total energy = 30697.8936 kcal/mol (30665.8684 without restraints) Performing minimization step: 257. Total energy = 30613.8721 kcal/mol (30581.9350 without restraints) Performing minimization step: 258. Total energy = 30530.5863 kcal/mol (30498.7359 without restraints) Performing minimization step: 259. Total energy = 30448.0262 kcal/mol (30416.2614 without restraints) Performing minimization step: 260. Total energy = 30366.1822 kcal/mol (30334.5018 without restraints) Performing minimization step: 261. Total energy = 30285.0440 kcal/mol (30253.4469 without restraints) Performing minimization step: 262. Total energy = 30204.6021 kcal/mol (30173.0872 without restraints) Performing minimization step: 263. Total energy = 30124.8471 kcal/mol (30093.4132 without restraints) Performing minimization step: 264. Total energy = 30045.7694 kcal/mol (30014.4155 without restraints) Performing minimization step: 265. Total energy = 29967.3600 kcal/mol (29936.0850 without restraints) Performing minimization step: 266. Total energy = 29889.6098 kcal/mol (29858.4127 without restraints) Performing minimization step: 267. Total energy = 29812.5098 kcal/mol (29781.3894 without restraints) Performing minimization step: 268. Total energy = 29736.0513 kcal/mol (29705.0067 without restraints) Performing minimization step: 269. Total energy = 29660.2251 kcal/mol (29629.2553 without restraints) Performing minimization step: 270. Total energy = 29585.0233 kcal/mol (29554.1272 without restraints) Performing minimization step: 271. Total energy = 29510.4371 kcal/mol (29479.6137 without restraints) Performing minimization step: 272. Total energy = 29436.4586 kcal/mol (29405.7071 without restraints) Performing minimization step: 273. Total energy = 29363.0793 kcal/mol (29332.3987 without restraints) Performing minimization step: 274. Total energy = 29290.2913 kcal/mol (29259.6805 without restraints) Performing minimization step: 275. Total energy = 29218.0871 kcal/mol (29187.5453 without restraints) Performing minimization step: 276. Total energy = 29146.4581 kcal/mol (29115.9844 without restraints) Performing minimization step: 277. Total energy = 29075.3968 kcal/mol (29044.9903 without restraints) Performing minimization step: 278. Total energy = 29004.8959 kcal/mol (28974.5557 without restraints) Performing minimization step: 279. Total energy = 28934.9479 kcal/mol (28904.6731 without restraints) Performing minimization step: 280. Total energy = 28865.5451 kcal/mol (28835.3349 without restraints) Performing minimization step: 281. Total energy = 28796.6806 kcal/mol (28766.5341 without restraints) Performing minimization step: 282. Total energy = 28728.3475 kcal/mol (28698.2639 without restraints) Performing minimization step: 283. Total energy = 28660.5382 kcal/mol (28630.5168 without restraints) Performing minimization step: 284. Total energy = 28593.2464 kcal/mol (28563.2863 without restraints) Performing minimization step: 285. Total energy = 28526.4645 kcal/mol (28496.5648 without restraints) Performing minimization step: 286. Total energy = 28460.1866 kcal/mol (28430.3467 without restraints) Performing minimization step: 287. Total energy = 28394.4059 kcal/mol (28364.6249 without restraints) Performing minimization step: 288. Total energy = 28329.1158 kcal/mol (28299.3930 without restraints) Performing minimization step: 289. Total energy = 28264.3099 kcal/mol (28234.6446 without restraints) Performing minimization step: 290. Total energy = 28199.9820 kcal/mol (28170.3733 without restraints) Performing minimization step: 291. Total energy = 28136.1257 kcal/mol (28106.5730 without restraints) Performing minimization step: 292. Total energy = 28072.7348 kcal/mol (28043.2375 without restraints) Performing minimization step: 293. Total energy = 28009.8032 kcal/mol (27980.3605 without restraints) Performing minimization step: 294. Total energy = 27947.3257 kcal/mol (27917.9368 without restraints) Performing minimization step: 295. Total energy = 27885.2960 kcal/mol (27855.9603 without restraints) Performing minimization step: 296. Total energy = 27823.7080 kcal/mol (27794.4248 without restraints) Performing minimization step: 297. Total energy = 27762.5569 kcal/mol (27733.3256 without restraints) Performing minimization step: 298. Total energy = 27701.8363 kcal/mol (27672.6563 without restraints) Performing minimization step: 299. Total energy = 27641.5407 kcal/mol (27612.4113 without restraints) Performing minimization step: 300. Total energy = 27581.6648 kcal/mol (27552.5853 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 301. Total energy = 27522.2039 kcal/mol (27493.1737 without restraints) Performing minimization step: 302. Total energy = 27463.1517 kcal/mol (27434.1703 without restraints) Performing minimization step: 303. Total energy = 27404.5037 kcal/mol (27375.5704 without restraints) Performing minimization step: 304. Total energy = 27346.2547 kcal/mol (27317.3689 without restraints) Performing minimization step: 305. Total energy = 27288.3996 kcal/mol (27259.5607 without restraints) Performing minimization step: 306. Total energy = 27230.9334 kcal/mol (27202.1409 without restraints) Performing minimization step: 307. Total energy = 27173.8514 kcal/mol (27145.1048 without restraints) Performing minimization step: 308. Total energy = 27117.1486 kcal/mol (27088.4471 without restraints) Performing minimization step: 309. Total energy = 27060.8206 kcal/mol (27032.1638 without restraints) Performing minimization step: 310. Total energy = 27004.8619 kcal/mol (26976.2493 without restraints) Performing minimization step: 311. Total energy = 26949.2687 kcal/mol (26920.6998 without restraints) Performing minimization step: 312. Total energy = 26894.0364 kcal/mol (26865.5106 without restraints) Performing minimization step: 313. Total energy = 26839.1606 kcal/mol (26810.6773 without restraints) Performing minimization step: 314. Total energy = 26784.6364 kcal/mol (26756.1951 without restraints) Performing minimization step: 315. Total energy = 26730.4600 kcal/mol (26702.0604 without restraints) Performing minimization step: 316. Total energy = 26676.6267 kcal/mol (26648.2681 without restraints) Performing minimization step: 317. Total energy = 26623.1324 kcal/mol (26594.8144 without restraints) Performing minimization step: 318. Total energy = 26569.9728 kcal/mol (26541.6949 without restraints) Performing minimization step: 319. Total energy = 26517.1445 kcal/mol (26488.9062 without restraints) Performing minimization step: 320. Total energy = 26464.6429 kcal/mol (26436.4438 without restraints) Performing minimization step: 321. Total energy = 26412.4641 kcal/mol (26384.3037 without restraints) Performing minimization step: 322. Total energy = 26360.6047 kcal/mol (26332.4826 without restraints) Performing minimization step: 323. Total energy = 26309.0603 kcal/mol (26280.9760 without restraints) Performing minimization step: 324. Total energy = 26257.8274 kcal/mol (26229.7804 without restraints) Performing minimization step: 325. Total energy = 26206.9021 kcal/mol (26178.8921 without restraints) Performing minimization step: 326. Total energy = 26156.2809 kcal/mol (26128.3075 without restraints) Performing minimization step: 327. Total energy = 26105.9601 kcal/mol (26078.0227 without restraints) Performing minimization step: 328. Total energy = 26055.9363 kcal/mol (26028.0347 without restraints) Performing minimization step: 329. Total energy = 26006.2053 kcal/mol (25978.3389 without restraints) Performing minimization step: 330. Total energy = 25956.7650 kcal/mol (25928.9336 without restraints) Performing minimization step: 331. Total energy = 25907.6109 kcal/mol (25879.8139 without restraints) Performing minimization step: 332. Total energy = 25858.7399 kcal/mol (25830.9770 without restraints) Performing minimization step: 333. Total energy = 25810.1487 kcal/mol (25782.4194 without restraints) Performing minimization step: 334. Total energy = 25761.8340 kcal/mol (25734.1381 without restraints) Performing minimization step: 335. Total energy = 25713.7928 kcal/mol (25686.1299 without restraints) Performing minimization step: 336. Total energy = 25666.0217 kcal/mol (25638.3914 without restraints) Performing minimization step: 337. Total energy = 25618.5177 kcal/mol (25590.9196 without restraints) Performing minimization step: 338. Total energy = 25571.2774 kcal/mol (25543.7111 without restraints) Performing minimization step: 339. Total energy = 25524.2984 kcal/mol (25496.7638 without restraints) Performing minimization step: 340. Total energy = 25477.5773 kcal/mol (25450.0738 without restraints) Performing minimization step: 341. Total energy = 25431.1113 kcal/mol (25403.6387 without restraints) Performing minimization step: 342. Total energy = 25384.8973 kcal/mol (25357.4553 without restraints) Performing minimization step: 343. Total energy = 25338.9333 kcal/mol (25311.5215 without restraints) Performing minimization step: 344. Total energy = 25293.2157 kcal/mol (25265.8337 without restraints) Performing minimization step: 345. Total energy = 25247.7417 kcal/mol (25220.3893 without restraints) Performing minimization step: 346. Total energy = 25202.5088 kcal/mol (25175.1856 without restraints) Performing minimization step: 347. Total energy = 25157.5143 kcal/mol (25130.2201 without restraints) Performing minimization step: 348. Total energy = 25112.7554 kcal/mol (25085.4897 without restraints) Performing minimization step: 349. Total energy = 25068.2300 kcal/mol (25040.9925 without restraints) Performing minimization step: 350. Total energy = 25023.9348 kcal/mol (24996.7255 without restraints) Performing minimization step: 351. Total energy = 24979.8680 kcal/mol (24952.6865 without restraints) Performing minimization step: 352. Total energy = 24936.0265 kcal/mol (24908.8722 without restraints) Performing minimization step: 353. Total energy = 24892.4079 kcal/mol (24865.2809 without restraints) Performing minimization step: 354. Total energy = 24849.0100 kcal/mol (24821.9100 without restraints) Performing minimization step: 355. Total energy = 24805.8307 kcal/mol (24778.7573 without restraints) Performing minimization step: 356. Total energy = 24762.8673 kcal/mol (24735.8203 without restraints) Performing minimization step: 357. Total energy = 24720.1174 kcal/mol (24693.0963 without restraints) Performing minimization step: 358. Total energy = 24677.5788 kcal/mol (24650.5835 without restraints) Performing minimization step: 359. Total energy = 24635.2492 kcal/mol (24608.2794 without restraints) Performing minimization step: 360. Total energy = 24593.1264 kcal/mol (24566.1821 without restraints) Performing minimization step: 361. Total energy = 24551.2088 kcal/mol (24524.2894 without restraints) Performing minimization step: 362. Total energy = 24509.4932 kcal/mol (24482.5986 without restraints) Performing minimization step: 363. Total energy = 24467.9780 kcal/mol (24441.1080 without restraints) Performing minimization step: 364. Total energy = 24426.6618 kcal/mol (24399.8160 without restraints) Performing minimization step: 365. Total energy = 24385.5414 kcal/mol (24358.7197 without restraints) Performing minimization step: 366. Total energy = 24344.6144 kcal/mol (24317.8163 without restraints) Performing minimization step: 367. Total energy = 24303.8796 kcal/mol (24277.1051 without restraints) Performing minimization step: 368. Total energy = 24263.3353 kcal/mol (24236.5844 without restraints) Performing minimization step: 369. Total energy = 24222.9792 kcal/mol (24196.2515 without restraints) Performing minimization step: 370. Total energy = 24182.8096 kcal/mol (24156.1048 without restraints) Performing minimization step: 371. Total energy = 24142.8248 kcal/mol (24116.1427 without restraints) Performing minimization step: 372. Total energy = 24103.0221 kcal/mol (24076.3625 without restraints) Performing minimization step: 373. Total energy = 24063.4003 kcal/mol (24036.7631 without restraints) Performing minimization step: 374. Total energy = 24023.9572 kcal/mol (23997.3418 without restraints) Performing minimization step: 375. Total energy = 23984.6910 kcal/mol (23958.0976 without restraints) Performing minimization step: 376. Total energy = 23945.6006 kcal/mol (23919.0290 without restraints) Performing minimization step: 377. Total energy = 23906.6841 kcal/mol (23880.1339 without restraints) Performing minimization step: 378. Total energy = 23867.9392 kcal/mol (23841.4103 without restraints) Performing minimization step: 379. Total energy = 23829.3648 kcal/mol (23802.8570 without restraints) Performing minimization step: 380. Total energy = 23790.9588 kcal/mol (23764.4721 without restraints) Performing minimization step: 381. Total energy = 23752.7200 kcal/mol (23726.2538 without restraints) Performing minimization step: 382. Total energy = 23714.6463 kcal/mol (23688.2007 without restraints) Performing minimization step: 383. Total energy = 23676.7370 kcal/mol (23650.3118 without restraints) Performing minimization step: 384. Total energy = 23638.9900 kcal/mol (23612.5849 without restraints) Performing minimization step: 385. Total energy = 23601.4032 kcal/mol (23575.0181 without restraints) Performing minimization step: 386. Total energy = 23563.9753 kcal/mol (23537.6100 without restraints) Performing minimization step: 387. Total energy = 23526.7054 kcal/mol (23500.3597 without restraints) Performing minimization step: 388. Total energy = 23489.5914 kcal/mol (23463.2652 without restraints) Performing minimization step: 389. Total energy = 23452.6320 kcal/mol (23426.3252 without restraints) Performing minimization step: 390. Total energy = 23415.8259 kcal/mol (23389.5381 without restraints) Performing minimization step: 391. Total energy = 23379.1714 kcal/mol (23352.9027 without restraints) Performing minimization step: 392. Total energy = 23342.6677 kcal/mol (23316.4179 without restraints) Performing minimization step: 393. Total energy = 23306.3132 kcal/mol (23280.0820 without restraints) Performing minimization step: 394. Total energy = 23270.1061 kcal/mol (23243.8933 without restraints) Performing minimization step: 395. Total energy = 23234.0458 kcal/mol (23207.8515 without restraints) Performing minimization step: 396. Total energy = 23198.1300 kcal/mol (23171.9539 without restraints) Performing minimization step: 397. Total energy = 23162.3585 kcal/mol (23136.2004 without restraints) Performing minimization step: 398. Total energy = 23126.7287 kcal/mol (23100.5885 without restraints) Performing minimization step: 399. Total energy = 23091.2399 kcal/mol (23065.1175 without restraints) Performing minimization step: 400. Total energy = 23055.8911 kcal/mol (23029.7862 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 401. Total energy = 23020.6807 kcal/mol (22994.5934 without restraints) Performing minimization step: 402. Total energy = 22985.6078 kcal/mol (22959.5378 without restraints) Performing minimization step: 403. Total energy = 22950.6711 kcal/mol (22924.6183 without restraints) Performing minimization step: 404. Total energy = 22915.8701 kcal/mol (22889.8343 without restraints) Performing minimization step: 405. Total energy = 22881.2025 kcal/mol (22855.1837 without restraints) Performing minimization step: 406. Total energy = 22846.6672 kcal/mol (22820.6653 without restraints) Performing minimization step: 407. Total energy = 22812.2644 kcal/mol (22786.2791 without restraints) Performing minimization step: 408. Total energy = 22777.9915 kcal/mol (22752.0227 without restraints) Performing minimization step: 409. Total energy = 22743.8477 kcal/mol (22717.8954 without restraints) Performing minimization step: 410. Total energy = 22709.8324 kcal/mol (22683.8964 without restraints) Performing minimization step: 411. Total energy = 22675.9436 kcal/mol (22650.0237 without restraints) Performing minimization step: 412. Total energy = 22642.1816 kcal/mol (22616.2778 without restraints) Performing minimization step: 413. Total energy = 22608.5443 kcal/mol (22582.6564 without restraints) Performing minimization step: 414. Total energy = 22575.0313 kcal/mol (22549.1593 without restraints) Performing minimization step: 415. Total energy = 22541.6409 kcal/mol (22515.7846 without restraints) Performing minimization step: 416. Total energy = 22508.3726 kcal/mol (22482.5317 without restraints) Performing minimization step: 417. Total energy = 22475.2254 kcal/mol (22449.4001 without restraints) Performing minimization step: 418. Total energy = 22442.1985 kcal/mol (22416.3885 without restraints) Performing minimization step: 419. Total energy = 22409.2904 kcal/mol (22383.4957 without restraints) Performing minimization step: 420. Total energy = 22376.5002 kcal/mol (22350.7205 without restraints) Performing minimization step: 421. Total energy = 22343.8273 kcal/mol (22318.0628 without restraints) Performing minimization step: 422. Total energy = 22311.2707 kcal/mol (22285.5211 without restraints) Performing minimization step: 423. Total energy = 22278.8293 kcal/mol (22253.0947 without restraints) Performing minimization step: 424. Total energy = 22246.5023 kcal/mol (22220.7825 without restraints) Performing minimization step: 425. Total energy = 22214.2891 kcal/mol (22188.5837 without restraints) Performing minimization step: 426. Total energy = 22182.1882 kcal/mol (22156.4974 without restraints) Performing minimization step: 427. Total energy = 22150.1996 kcal/mol (22124.5232 without restraints) Performing minimization step: 428. Total energy = 22118.3214 kcal/mol (22092.6593 without restraints) Performing minimization step: 429. Total energy = 22086.5533 kcal/mol (22060.9055 without restraints) Performing minimization step: 430. Total energy = 22054.8943 kcal/mol (22029.2607 without restraints) Performing minimization step: 431. Total energy = 22023.3437 kcal/mol (21997.7240 without restraints) Performing minimization step: 432. Total energy = 21991.9007 kcal/mol (21966.2950 without restraints) Performing minimization step: 433. Total energy = 21960.5644 kcal/mol (21934.9726 without restraints) Performing minimization step: 434. Total energy = 21929.3341 kcal/mol (21903.7562 without restraints) Performing minimization step: 435. Total energy = 21898.2093 kcal/mol (21872.6450 without restraints) Performing minimization step: 436. Total energy = 21867.1884 kcal/mol (21841.6376 without restraints) Performing minimization step: 437. Total energy = 21836.2714 kcal/mol (21810.7342 without restraints) Performing minimization step: 438. Total energy = 21805.4571 kcal/mol (21779.9334 without restraints) Performing minimization step: 439. Total energy = 21774.7451 kcal/mol (21749.2347 without restraints) Performing minimization step: 440. Total energy = 21744.1345 kcal/mol (21718.6374 without restraints) Performing minimization step: 441. Total energy = 21713.6245 kcal/mol (21688.1406 without restraints) Performing minimization step: 442. Total energy = 21683.2145 kcal/mol (21657.7437 without restraints) Performing minimization step: 443. Total energy = 21652.9036 kcal/mol (21627.4459 without restraints) Performing minimization step: 444. Total energy = 21622.6914 kcal/mol (21597.2466 without restraints) Performing minimization step: 445. Total energy = 21592.5770 kcal/mol (21567.1450 without restraints) Performing minimization step: 446. Total energy = 21562.5598 kcal/mol (21537.1406 without restraints) Performing minimization step: 447. Total energy = 21532.6392 kcal/mol (21507.2328 without restraints) Performing minimization step: 448. Total energy = 21502.8144 kcal/mol (21477.4206 without restraints) Performing minimization step: 449. Total energy = 21473.0844 kcal/mol (21447.7032 without restraints) Performing minimization step: 450. Total energy = 21443.4493 kcal/mol (21418.0806 without restraints) Performing minimization step: 451. Total energy = 21413.9084 kcal/mol (21388.5522 without restraints) Performing minimization step: 452. Total energy = 21384.4605 kcal/mol (21359.1166 without restraints) Performing minimization step: 453. Total energy = 21355.1048 kcal/mol (21329.7733 without restraints) Performing minimization step: 454. Total energy = 21325.8414 kcal/mol (21300.5221 without restraints) Performing minimization step: 455. Total energy = 21296.6692 kcal/mol (21271.3618 without restraints) Performing minimization step: 456. Total energy = 21267.5876 kcal/mol (21242.2925 without restraints) Performing minimization step: 457. Total energy = 21238.5962 kcal/mol (21213.3131 without restraints) Performing minimization step: 458. Total energy = 21209.6946 kcal/mol (21184.4235 without restraints) Performing minimization step: 459. Total energy = 21180.8822 kcal/mol (21155.6230 without restraints) Performing minimization step: 460. Total energy = 21152.1586 kcal/mol (21126.9112 without restraints) Performing minimization step: 461. Total energy = 21123.5221 kcal/mol (21098.2865 without restraints) Performing minimization step: 462. Total energy = 21094.9736 kcal/mol (21069.7496 without restraints) Performing minimization step: 463. Total energy = 21066.5114 kcal/mol (21041.2992 without restraints) Performing minimization step: 464. Total energy = 21038.1352 kcal/mol (21012.9345 without restraints) Performing minimization step: 465. Total energy = 21009.8453 kcal/mol (20984.6562 without restraints) Performing minimization step: 466. Total energy = 20981.6409 kcal/mol (20956.4631 without restraints) Performing minimization step: 467. Total energy = 20953.5211 kcal/mol (20928.3548 without restraints) Performing minimization step: 468. Total energy = 20925.4851 kcal/mol (20900.3301 without restraints) Performing minimization step: 469. Total energy = 20897.5327 kcal/mol (20872.3890 without restraints) Performing minimization step: 470. Total energy = 20869.6633 kcal/mol (20844.5309 without restraints) Performing minimization step: 471. Total energy = 20841.8767 kcal/mol (20816.7554 without restraints) Performing minimization step: 472. Total energy = 20814.1718 kcal/mol (20789.0617 without restraints) Performing minimization step: 473. Total energy = 20786.5487 kcal/mol (20761.4497 without restraints) Performing minimization step: 474. Total energy = 20759.0067 kcal/mol (20733.9187 without restraints) Performing minimization step: 475. Total energy = 20731.5453 kcal/mol (20706.4682 without restraints) Performing minimization step: 476. Total energy = 20704.1640 kcal/mol (20679.0979 without restraints) Performing minimization step: 477. Total energy = 20676.8625 kcal/mol (20651.8072 without restraints) Performing minimization step: 478. Total energy = 20649.6398 kcal/mol (20624.5954 without restraints) Performing minimization step: 479. Total energy = 20622.4960 kcal/mol (20597.4623 without restraints) Performing minimization step: 480. Total energy = 20595.4307 kcal/mol (20570.4077 without restraints) Performing minimization step: 481. Total energy = 20568.4434 kcal/mol (20543.4311 without restraints) Performing minimization step: 482. Total energy = 20541.5333 kcal/mol (20516.5316 without restraints) Performing minimization step: 483. Total energy = 20514.7001 kcal/mol (20489.7089 without restraints) Performing minimization step: 484. Total energy = 20487.9434 kcal/mol (20462.9628 without restraints) Performing minimization step: 485. Total energy = 20461.2629 kcal/mol (20436.2926 without restraints) Performing minimization step: 486. Total energy = 20434.6579 kcal/mol (20409.6982 without restraints) Performing minimization step: 487. Total energy = 20408.1285 kcal/mol (20383.1791 without restraints) Performing minimization step: 488. Total energy = 20381.6741 kcal/mol (20356.7351 without restraints) Performing minimization step: 489. Total energy = 20355.2940 kcal/mol (20330.3653 without restraints) Performing minimization step: 490. Total energy = 20328.9877 kcal/mol (20304.0693 without restraints) Performing minimization step: 491. Total energy = 20302.7552 kcal/mol (20277.8471 without restraints) Performing minimization step: 492. Total energy = 20276.5956 kcal/mol (20251.6975 without restraints) Performing minimization step: 493. Total energy = 20250.5089 kcal/mol (20225.6211 without restraints) Performing minimization step: 494. Total energy = 20224.4946 kcal/mol (20199.6167 without restraints) Performing minimization step: 495. Total energy = 20198.5525 kcal/mol (20173.6846 without restraints) Performing minimization step: 496. Total energy = 20172.6818 kcal/mol (20147.8240 without restraints) Performing minimization step: 497. Total energy = 20146.8827 kcal/mol (20122.0348 without restraints) Performing minimization step: 498. Total energy = 20121.1548 kcal/mol (20096.3168 without restraints) Performing minimization step: 499. Total energy = 20095.4972 kcal/mol (20070.6691 without restraints) Performing minimization step: 500. Total energy = 20069.9100 kcal/mol (20045.0917 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 501. Total energy = 20044.3929 kcal/mol (20019.5846 without restraints) Performing minimization step: 502. Total energy = 20018.9447 kcal/mol (19994.1460 without restraints) Performing minimization step: 503. Total energy = 19993.5645 kcal/mol (19968.7756 without restraints) Performing minimization step: 504. Total energy = 19968.2542 kcal/mol (19943.4748 without restraints) Performing minimization step: 505. Total energy = 19943.0120 kcal/mol (19918.2423 without restraints) Performing minimization step: 506. Total energy = 19917.8384 kcal/mol (19893.0784 without restraints) Performing minimization step: 507. Total energy = 19892.7327 kcal/mol (19867.9823 without restraints) Performing minimization step: 508. Total energy = 19867.6941 kcal/mol (19842.9532 without restraints) Performing minimization step: 509. Total energy = 19842.7228 kcal/mol (19817.9914 without restraints) Performing minimization step: 510. Total energy = 19817.8180 kcal/mol (19793.0960 without restraints) Performing minimization step: 511. Total energy = 19792.9798 kcal/mol (19768.2673 without restraints) Performing minimization step: 512. Total energy = 19768.2075 kcal/mol (19743.5044 without restraints) Performing minimization step: 513. Total energy = 19743.5010 kcal/mol (19718.8072 without restraints) Performing minimization step: 514. Total energy = 19718.8599 kcal/mol (19694.1755 without restraints) Performing minimization step: 515. Total energy = 19694.2839 kcal/mol (19669.6087 without restraints) Performing minimization step: 516. Total energy = 19669.7726 kcal/mol (19645.1069 without restraints) Performing minimization step: 517. Total energy = 19645.3261 kcal/mol (19620.6695 without restraints) Performing minimization step: 518. Total energy = 19620.9437 kcal/mol (19596.2963 without restraints) Performing minimization step: 519. Total energy = 19596.6252 kcal/mol (19571.9870 without restraints) Performing minimization step: 520. Total energy = 19572.3705 kcal/mol (19547.7414 without restraints) Performing minimization step: 521. Total energy = 19548.1792 kcal/mol (19523.5595 without restraints) Performing minimization step: 522. Total energy = 19524.0510 kcal/mol (19499.4401 without restraints) Performing minimization step: 523. Total energy = 19499.9853 kcal/mol (19475.3834 without restraints) Performing minimization step: 524. Total energy = 19475.9820 kcal/mol (19451.3891 without restraints) Performing minimization step: 525. Total energy = 19452.0411 kcal/mol (19427.4572 without restraints) Performing minimization step: 526. Total energy = 19428.1617 kcal/mol (19403.5867 without restraints) Performing minimization step: 527. Total energy = 19404.3441 kcal/mol (19379.7781 without restraints) Performing minimization step: 528. Total energy = 19380.5880 kcal/mol (19356.0309 without restraints) Performing minimization step: 529. Total energy = 19356.8926 kcal/mol (19332.3443 without restraints) Performing minimization step: 530. Total energy = 19333.2581 kcal/mol (19308.7187 without restraints) Performing minimization step: 531. Total energy = 19309.6841 kcal/mol (19285.1536 without restraints) Performing minimization step: 532. Total energy = 19286.1707 kcal/mol (19261.6489 without restraints) Performing minimization step: 533. Total energy = 19262.7170 kcal/mol (19238.2040 without restraints) Performing minimization step: 534. Total energy = 19239.3235 kcal/mol (19214.8192 without restraints) Performing minimization step: 535. Total energy = 19215.9890 kcal/mol (19191.4934 without restraints) Performing minimization step: 536. Total energy = 19192.7137 kcal/mol (19168.2268 without restraints) Performing minimization step: 537. Total energy = 19169.4970 kcal/mol (19145.0187 without restraints) Performing minimization step: 538. Total energy = 19146.3389 kcal/mol (19121.8693 without restraints) Performing minimization step: 539. Total energy = 19123.2396 kcal/mol (19098.7785 without restraints) Performing minimization step: 540. Total energy = 19100.1984 kcal/mol (19075.7459 without restraints) Performing minimization step: 541. Total energy = 19077.2154 kcal/mol (19052.7715 without restraints) Performing minimization step: 542. Total energy = 19054.2905 kcal/mol (19029.8553 without restraints) Performing minimization step: 543. Total energy = 19031.4229 kcal/mol (19006.9960 without restraints) Performing minimization step: 544. Total energy = 19008.6125 kcal/mol (18984.1941 without restraints) Performing minimization step: 545. Total energy = 18985.8589 kcal/mol (18961.4489 without restraints) Performing minimization step: 546. Total energy = 18963.1618 kcal/mol (18938.7603 without restraints) Performing minimization step: 547. Total energy = 18940.5216 kcal/mol (18916.1285 without restraints) Performing minimization step: 548. Total energy = 18917.9374 kcal/mol (18893.5525 without restraints) Performing minimization step: 549. Total energy = 18895.4095 kcal/mol (18871.0331 without restraints) Performing minimization step: 550. Total energy = 18872.9375 kcal/mol (18848.5694 without restraints) Performing minimization step: 551. Total energy = 18850.5216 kcal/mol (18826.1619 without restraints) Performing minimization step: 552. Total energy = 18828.1609 kcal/mol (18803.8094 without restraints) Performing minimization step: 553. Total energy = 18805.8547 kcal/mol (18781.5115 without restraints) Performing minimization step: 554. Total energy = 18783.6036 kcal/mol (18759.2687 without restraints) Performing minimization step: 555. Total energy = 18761.4074 kcal/mol (18737.0805 without restraints) Performing minimization step: 556. Total energy = 18739.2663 kcal/mol (18714.9478 without restraints) Performing minimization step: 557. Total energy = 18717.1788 kcal/mol (18692.8684 without restraints) Performing minimization step: 558. Total energy = 18695.1457 kcal/mol (18670.8434 without restraints) Performing minimization step: 559. Total energy = 18673.1665 kcal/mol (18648.8724 without restraints) Performing minimization step: 560. Total energy = 18651.2408 kcal/mol (18626.9548 without restraints) Performing minimization step: 561. Total energy = 18629.3685 kcal/mol (18605.0906 without restraints) Performing minimization step: 562. Total energy = 18607.5491 kcal/mol (18583.2793 without restraints) Performing minimization step: 563. Total energy = 18585.7831 kcal/mol (18561.5214 without restraints) Performing minimization step: 564. Total energy = 18564.0699 kcal/mol (18539.8163 without restraints) Performing minimization step: 565. Total energy = 18542.4092 kcal/mol (18518.1635 without restraints) Performing minimization step: 566. Total energy = 18520.8014 kcal/mol (18496.5637 without restraints) Performing minimization step: 567. Total energy = 18499.2456 kcal/mol (18475.0159 without restraints) Performing minimization step: 568. Total energy = 18477.7420 kcal/mol (18453.5202 without restraints) Performing minimization step: 569. Total energy = 18456.2901 kcal/mol (18432.0762 without restraints) Performing minimization step: 570. Total energy = 18434.8900 kcal/mol (18410.6841 without restraints) Performing minimization step: 571. Total energy = 18413.5409 kcal/mol (18389.3430 without restraints) Performing minimization step: 572. Total energy = 18392.2429 kcal/mol (18368.0527 without restraints) Performing minimization step: 573. Total energy = 18370.9967 kcal/mol (18346.8142 without restraints) Performing minimization step: 574. Total energy = 18349.8008 kcal/mol (18325.6263 without restraints) Performing minimization step: 575. Total energy = 18328.6554 kcal/mol (18304.4888 without restraints) Performing minimization step: 576. Total energy = 18307.5615 kcal/mol (18283.4027 without restraints) Performing minimization step: 577. Total energy = 18286.5175 kcal/mol (18262.3663 without restraints) Performing minimization step: 578. Total energy = 18265.5239 kcal/mol (18241.3806 without restraints) Performing minimization step: 579. Total energy = 18244.5802 kcal/mol (18220.4446 without restraints) Performing minimization step: 580. Total energy = 18223.6862 kcal/mol (18199.5583 without restraints) Performing minimization step: 581. Total energy = 18202.8416 kcal/mol (18178.7214 without restraints) Performing minimization step: 582. Total energy = 18182.0462 kcal/mol (18157.9338 without restraints) Performing minimization step: 583. Total energy = 18161.3008 kcal/mol (18137.1960 without restraints) Performing minimization step: 584. Total energy = 18140.6044 kcal/mol (18116.5073 without restraints) Performing minimization step: 585. Total energy = 18119.9564 kcal/mol (18095.8671 without restraints) Performing minimization step: 586. Total energy = 18099.3577 kcal/mol (18075.2757 without restraints) Performing minimization step: 587. Total energy = 18078.8075 kcal/mol (18054.7332 without restraints) Performing minimization step: 588. Total energy = 18058.3055 kcal/mol (18034.2389 without restraints) Performing minimization step: 589. Total energy = 18037.8518 kcal/mol (18013.7927 without restraints) Performing minimization step: 590. Total energy = 18017.4460 kcal/mol (17993.3945 without restraints) Performing minimization step: 591. Total energy = 17997.0884 kcal/mol (17973.0444 without restraints) Performing minimization step: 592. Total energy = 17976.7783 kcal/mol (17952.7419 without restraints) Performing minimization step: 593. Total energy = 17956.5155 kcal/mol (17932.4865 without restraints) Performing minimization step: 594. Total energy = 17936.3006 kcal/mol (17912.2793 without restraints) Performing minimization step: 595. Total energy = 17916.1329 kcal/mol (17892.1189 without restraints) Performing minimization step: 596. Total energy = 17896.0119 kcal/mol (17872.0054 without restraints) Performing minimization step: 597. Total energy = 17875.9381 kcal/mol (17851.9391 without restraints) Performing minimization step: 598. Total energy = 17855.9107 kcal/mol (17831.9190 without restraints) Performing minimization step: 599. Total energy = 17835.9302 kcal/mol (17811.9460 without restraints) Performing minimization step: 600. Total energy = 17815.9960 kcal/mol (17792.0194 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 601. Total energy = 17796.1083 kcal/mol (17772.1390 without restraints) Performing minimization step: 602. Total energy = 17776.2666 kcal/mol (17752.3047 without restraints) Performing minimization step: 603. Total energy = 17756.4708 kcal/mol (17732.5163 without restraints) Performing minimization step: 604. Total energy = 17736.7211 kcal/mol (17712.7739 without restraints) Performing minimization step: 605. Total energy = 17717.0167 kcal/mol (17693.0768 without restraints) Performing minimization step: 606. Total energy = 17697.3584 kcal/mol (17673.4259 without restraints) Performing minimization step: 607. Total energy = 17677.7457 kcal/mol (17653.8204 without restraints) Performing minimization step: 608. Total energy = 17658.1776 kcal/mol (17634.2596 without restraints) Performing minimization step: 609. Total energy = 17638.6548 kcal/mol (17614.7440 without restraints) Performing minimization step: 610. Total energy = 17619.1768 kcal/mol (17595.2734 without restraints) Performing minimization step: 611. Total energy = 17599.7432 kcal/mol (17575.8468 without restraints) Performing minimization step: 612. Total energy = 17580.3542 kcal/mol (17556.4651 without restraints) Performing minimization step: 613. Total energy = 17561.0091 kcal/mol (17537.1274 without restraints) Performing minimization step: 614. Total energy = 17541.7093 kcal/mol (17517.8348 without restraints) Performing minimization step: 615. Total energy = 17522.4539 kcal/mol (17498.5866 without restraints) Performing minimization step: 616. Total energy = 17503.2426 kcal/mol (17479.3825 without restraints) Performing minimization step: 617. Total energy = 17484.0745 kcal/mol (17460.2216 without restraints) Performing minimization step: 618. Total energy = 17464.9504 kcal/mol (17441.1045 without restraints) Performing minimization step: 619. Total energy = 17445.8699 kcal/mol (17422.0313 without restraints) Performing minimization step: 620. Total energy = 17426.8330 kcal/mol (17403.0016 without restraints) Performing minimization step: 621. Total energy = 17407.8396 kcal/mol (17384.0152 without restraints) Performing minimization step: 622. Total energy = 17388.8890 kcal/mol (17365.0717 without restraints) Performing minimization step: 623. Total energy = 17369.9816 kcal/mol (17346.1715 without restraints) Performing minimization step: 624. Total energy = 17351.1171 kcal/mol (17327.3140 without restraints) Performing minimization step: 625. Total energy = 17332.2955 kcal/mol (17308.4995 without restraints) Performing minimization step: 626. Total energy = 17313.5168 kcal/mol (17289.7278 without restraints) Performing minimization step: 627. Total energy = 17294.7804 kcal/mol (17270.9985 without restraints) Performing minimization step: 628. Total energy = 17276.0867 kcal/mol (17252.3121 without restraints) Performing minimization step: 629. Total energy = 17257.4352 kcal/mol (17233.6673 without restraints) Performing minimization step: 630. Total energy = 17238.8258 kcal/mol (17215.0650 without restraints) Performing minimization step: 631. Total energy = 17220.2584 kcal/mol (17196.5046 without restraints) Performing minimization step: 632. Total energy = 17201.7329 kcal/mol (17177.9862 without restraints) Performing minimization step: 633. Total energy = 17183.2492 kcal/mol (17159.5093 without restraints) Performing minimization step: 634. Total energy = 17164.8067 kcal/mol (17141.0738 without restraints) Performing minimization step: 635. Total energy = 17146.4049 kcal/mol (17122.6790 without restraints) Performing minimization step: 636. Total energy = 17128.0455 kcal/mol (17104.3265 without restraints) Performing minimization step: 637. Total energy = 17109.7271 kcal/mol (17086.0151 without restraints) Performing minimization step: 638. Total energy = 17091.4497 kcal/mol (17067.7446 without restraints) Performing minimization step: 639. Total energy = 17073.2130 kcal/mol (17049.5148 without restraints) Performing minimization step: 640. Total energy = 17055.0173 kcal/mol (17031.3259 without restraints) Performing minimization step: 641. Total energy = 17036.8618 kcal/mol (17013.1774 without restraints) Performing minimization step: 642. Total energy = 17018.7477 kcal/mol (16995.0702 without restraints) Performing minimization step: 643. Total energy = 17000.6739 kcal/mol (16977.0032 without restraints) Performing minimization step: 644. Total energy = 16982.6404 kcal/mol (16958.9766 without restraints) Performing minimization step: 645. Total energy = 16964.6470 kcal/mol (16940.9900 without restraints) Performing minimization step: 646. Total energy = 16946.6933 kcal/mol (16923.0431 without restraints) Performing minimization step: 647. Total energy = 16928.7803 kcal/mol (16905.1371 without restraints) Performing minimization step: 648. Total energy = 16910.9068 kcal/mol (16887.2703 without restraints) Performing minimization step: 649. Total energy = 16893.0730 kcal/mol (16869.4432 without restraints) Performing minimization step: 650. Total energy = 16875.2789 kcal/mol (16851.6560 without restraints) Performing minimization step: 651. Total energy = 16857.5246 kcal/mol (16833.9084 without restraints) Performing minimization step: 652. Total energy = 16839.8094 kcal/mol (16816.2000 without restraints) Performing minimization step: 653. Total energy = 16822.1332 kcal/mol (16798.5306 without restraints) Performing minimization step: 654. Total energy = 16804.4962 kcal/mol (16780.9004 without restraints) Performing minimization step: 655. Total energy = 16786.8984 kcal/mol (16763.3093 without restraints) Performing minimization step: 656. Total energy = 16769.3400 kcal/mol (16745.7577 without restraints) Performing minimization step: 657. Total energy = 16751.8201 kcal/mol (16728.2444 without restraints) Performing minimization step: 658. Total energy = 16734.3386 kcal/mol (16710.7695 without restraints) Performing minimization step: 659. Total energy = 16716.8954 kcal/mol (16693.3331 without restraints) Performing minimization step: 660. Total energy = 16699.4913 kcal/mol (16675.9357 without restraints) Performing minimization step: 661. Total energy = 16682.1253 kcal/mol (16658.5765 without restraints) Performing minimization step: 662. Total energy = 16664.7974 kcal/mol (16641.2552 without restraints) Performing minimization step: 663. Total energy = 16647.5075 kcal/mol (16623.9719 without restraints) Performing minimization step: 664. Total energy = 16630.2559 kcal/mol (16606.7269 without restraints) Performing minimization step: 665. Total energy = 16613.0419 kcal/mol (16589.5196 without restraints) Performing minimization step: 666. Total energy = 16595.8654 kcal/mol (16572.3498 without restraints) Performing minimization step: 667. Total energy = 16578.7266 kcal/mol (16555.2176 without restraints) Performing minimization step: 668. Total energy = 16561.6256 kcal/mol (16538.1233 without restraints) Performing minimization step: 669. Total energy = 16544.5621 kcal/mol (16521.0664 without restraints) Performing minimization step: 670. Total energy = 16527.5357 kcal/mol (16504.0466 without restraints) Performing minimization step: 671. Total energy = 16510.5467 kcal/mol (16487.0641 without restraints) Performing minimization step: 672. Total energy = 16493.5943 kcal/mol (16470.1183 without restraints) Performing minimization step: 673. Total energy = 16476.6793 kcal/mol (16453.2101 without restraints) Performing minimization step: 674. Total energy = 16459.8012 kcal/mol (16436.3382 without restraints) Performing minimization step: 675. Total energy = 16442.9597 kcal/mol (16419.5034 without restraints) Performing minimization step: 676. Total energy = 16426.1549 kcal/mol (16402.7051 without restraints) Performing minimization step: 677. Total energy = 16409.3868 kcal/mol (16385.9435 without restraints) Performing minimization step: 678. Total energy = 16392.6549 kcal/mol (16369.2182 without restraints) Performing minimization step: 679. Total energy = 16375.9598 kcal/mol (16352.5298 without restraints) Performing minimization step: 680. Total energy = 16359.3008 kcal/mol (16335.8771 without restraints) Performing minimization step: 681. Total energy = 16342.6778 kcal/mol (16319.2607 without restraints) Performing minimization step: 682. Total energy = 16326.0909 kcal/mol (16302.6802 without restraints) Performing minimization step: 683. Total energy = 16309.5402 kcal/mol (16286.1361 without restraints) Performing minimization step: 684. Total energy = 16293.0255 kcal/mol (16269.6278 without restraints) Performing minimization step: 685. Total energy = 16276.5460 kcal/mol (16253.1547 without restraints) Performing minimization step: 686. Total energy = 16260.1023 kcal/mol (16236.7175 without restraints) Performing minimization step: 687. Total energy = 16243.6943 kcal/mol (16220.3161 without restraints) Performing minimization step: 688. Total energy = 16227.3213 kcal/mol (16203.9494 without restraints) Performing minimization step: 689. Total energy = 16210.9833 kcal/mol (16187.6178 without restraints) Performing minimization step: 690. Total energy = 16194.6808 kcal/mol (16171.3217 without restraints) Performing minimization step: 691. Total energy = 16178.4132 kcal/mol (16155.0605 without restraints) Performing minimization step: 692. Total energy = 16162.1810 kcal/mol (16138.8347 without restraints) Performing minimization step: 693. Total energy = 16145.9837 kcal/mol (16122.6441 without restraints) Performing minimization step: 694. Total energy = 16129.8210 kcal/mol (16106.4876 without restraints) Performing minimization step: 695. Total energy = 16113.6932 kcal/mol (16090.3662 without restraints) Performing minimization step: 696. Total energy = 16097.5998 kcal/mol (16074.2792 without restraints) Performing minimization step: 697. Total energy = 16081.5408 kcal/mol (16058.2268 without restraints) Performing minimization step: 698. Total energy = 16065.5164 kcal/mol (16042.2085 without restraints) Performing minimization step: 699. Total energy = 16049.5263 kcal/mol (16026.2248 without restraints) Performing minimization step: 700. Total energy = 16033.5704 kcal/mol (16010.2752 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 701. Total energy = 16017.6485 kcal/mol (15994.3596 without restraints) Performing minimization step: 702. Total energy = 16001.7604 kcal/mol (15978.4778 without restraints) Performing minimization step: 703. Total energy = 15985.9064 kcal/mol (15962.6303 without restraints) Performing minimization step: 704. Total energy = 15970.0860 kcal/mol (15946.8161 without restraints) Performing minimization step: 705. Total energy = 15954.3001 kcal/mol (15931.0364 without restraints) Performing minimization step: 706. Total energy = 15938.5478 kcal/mol (15915.2905 without restraints) Performing minimization step: 707. Total energy = 15922.8290 kcal/mol (15899.5781 without restraints) Performing minimization step: 708. Total energy = 15907.1435 kcal/mol (15883.8987 without restraints) Performing minimization step: 709. Total energy = 15891.4910 kcal/mol (15868.2527 without restraints) Performing minimization step: 710. Total energy = 15875.8717 kcal/mol (15852.6396 without restraints) Performing minimization step: 711. Total energy = 15860.2855 kcal/mol (15837.0597 without restraints) Performing minimization step: 712. Total energy = 15844.7323 kcal/mol (15821.5127 without restraints) Performing minimization step: 713. Total energy = 15829.2123 kcal/mol (15805.9988 without restraints) Performing minimization step: 714. Total energy = 15813.7249 kcal/mol (15790.5177 without restraints) Performing minimization step: 715. Total energy = 15798.2700 kcal/mol (15775.0691 without restraints) Performing minimization step: 716. Total energy = 15782.8481 kcal/mol (15759.6534 without restraints) Performing minimization step: 717. Total energy = 15767.4587 kcal/mol (15744.2702 without restraints) Performing minimization step: 718. Total energy = 15752.1018 kcal/mol (15728.9196 without restraints) Performing minimization step: 719. Total energy = 15736.7769 kcal/mol (15713.6009 without restraints) Performing minimization step: 720. Total energy = 15721.4847 kcal/mol (15698.3149 without restraints) Performing minimization step: 721. Total energy = 15706.2244 kcal/mol (15683.0607 without restraints) Performing minimization step: 722. Total energy = 15690.9963 kcal/mol (15667.8389 without restraints) Performing minimization step: 723. Total energy = 15675.8003 kcal/mol (15652.6490 without restraints) Performing minimization step: 724. Total energy = 15660.6363 kcal/mol (15637.4912 without restraints) Performing minimization step: 725. Total energy = 15645.5043 kcal/mol (15622.3654 without restraints) Performing minimization step: 726. Total energy = 15630.4040 kcal/mol (15607.2713 without restraints) Performing minimization step: 727. Total energy = 15615.3352 kcal/mol (15592.2086 without restraints) Performing minimization step: 728. Total energy = 15600.2981 kcal/mol (15577.1776 without restraints) Performing minimization step: 729. Total energy = 15585.2922 kcal/mol (15562.1777 without restraints) Performing minimization step: 730. Total energy = 15570.3178 kcal/mol (15547.2096 without restraints) Performing minimization step: 731. Total energy = 15555.3747 kcal/mol (15532.2727 without restraints) Performing minimization step: 732. Total energy = 15540.4634 kcal/mol (15517.3675 without restraints) Performing minimization step: 733. Total energy = 15525.5828 kcal/mol (15502.4929 without restraints) Performing minimization step: 734. Total energy = 15510.7332 kcal/mol (15487.6495 without restraints) Performing minimization step: 735. Total energy = 15495.9140 kcal/mol (15472.8364 without restraints) Performing minimization step: 736. Total energy = 15481.1264 kcal/mol (15458.0549 without restraints) Performing minimization step: 737. Total energy = 15466.3693 kcal/mol (15443.3038 without restraints) Performing minimization step: 738. Total energy = 15451.6428 kcal/mol (15428.5834 without restraints) Performing minimization step: 739. Total energy = 15436.9469 kcal/mol (15413.8937 without restraints) Performing minimization step: 740. Total energy = 15422.2822 kcal/mol (15399.2349 without restraints) Performing minimization step: 741. Total energy = 15407.6476 kcal/mol (15384.6065 without restraints) Performing minimization step: 742. Total energy = 15393.0430 kcal/mol (15370.0079 without restraints) Performing minimization step: 743. Total energy = 15378.4690 kcal/mol (15355.4400 without restraints) Performing minimization step: 744. Total energy = 15363.9248 kcal/mol (15340.9018 without restraints) Performing minimization step: 745. Total energy = 15349.4107 kcal/mol (15326.3938 without restraints) Performing minimization step: 746. Total energy = 15334.9268 kcal/mol (15311.9159 without restraints) Performing minimization step: 747. Total energy = 15320.4728 kcal/mol (15297.4677 without restraints) Performing minimization step: 748. Total energy = 15306.0486 kcal/mol (15283.0495 without restraints) Performing minimization step: 749. Total energy = 15291.6545 kcal/mol (15268.6616 without restraints) Performing minimization step: 750. Total energy = 15277.2897 kcal/mol (15254.3029 without restraints) Performing minimization step: 751. Total energy = 15262.9548 kcal/mol (15239.9739 without restraints) Performing minimization step: 752. Total energy = 15248.6492 kcal/mol (15225.6745 without restraints) Performing minimization step: 753. Total energy = 15234.3731 kcal/mol (15211.4042 without restraints) Performing minimization step: 754. Total energy = 15220.1260 kcal/mol (15197.1631 without restraints) Performing minimization step: 755. Total energy = 15205.9085 kcal/mol (15182.9517 without restraints) Performing minimization step: 756. Total energy = 15191.7199 kcal/mol (15168.7690 without restraints) Performing minimization step: 757. Total energy = 15177.5603 kcal/mol (15154.6154 without restraints) Performing minimization step: 758. Total energy = 15163.4299 kcal/mol (15140.4909 without restraints) Performing minimization step: 759. Total energy = 15149.3281 kcal/mol (15126.3949 without restraints) Performing minimization step: 760. Total energy = 15135.2553 kcal/mol (15112.3282 without restraints) Performing minimization step: 761. Total energy = 15121.2115 kcal/mol (15098.2904 without restraints) Performing minimization step: 762. Total energy = 15107.1962 kcal/mol (15084.2809 without restraints) Performing minimization step: 763. Total energy = 15093.2092 kcal/mol (15070.2999 without restraints) Performing minimization step: 764. Total energy = 15079.2510 kcal/mol (15056.3477 without restraints) Performing minimization step: 765. Total energy = 15065.3207 kcal/mol (15042.4232 without restraints) Performing minimization step: 766. Total energy = 15051.4193 kcal/mol (15028.5278 without restraints) Performing minimization step: 767. Total energy = 15037.5460 kcal/mol (15014.6604 without restraints) Performing minimization step: 768. Total energy = 15023.7006 kcal/mol (15000.8209 without restraints) Performing minimization step: 769. Total energy = 15009.8836 kcal/mol (14987.0097 without restraints) Performing minimization step: 770. Total energy = 14996.0947 kcal/mol (14973.2268 without restraints) Performing minimization step: 771. Total energy = 14982.3338 kcal/mol (14959.4718 without restraints) Performing minimization step: 772. Total energy = 14968.6008 kcal/mol (14945.7447 without restraints) Performing minimization step: 773. Total energy = 14954.8955 kcal/mol (14932.0453 without restraints) Performing minimization step: 774. Total energy = 14941.2187 kcal/mol (14918.3743 without restraints) Performing minimization step: 775. Total energy = 14927.5688 kcal/mol (14904.7303 without restraints) Performing minimization step: 776. Total energy = 14913.9464 kcal/mol (14891.1138 without restraints) Performing minimization step: 777. Total energy = 14900.3514 kcal/mol (14877.5246 without restraints) Performing minimization step: 778. Total energy = 14886.7836 kcal/mol (14863.9627 without restraints) Performing minimization step: 779. Total energy = 14873.2436 kcal/mol (14850.4285 without restraints) Performing minimization step: 780. Total energy = 14859.7305 kcal/mol (14836.9213 without restraints) Performing minimization step: 781. Total energy = 14846.2446 kcal/mol (14823.4412 without restraints) Performing minimization step: 782. Total energy = 14832.7858 kcal/mol (14809.9883 without restraints) Performing minimization step: 783. Total energy = 14819.3543 kcal/mol (14796.5626 without restraints) Performing minimization step: 784. Total energy = 14805.9495 kcal/mol (14783.1637 without restraints) Performing minimization step: 785. Total energy = 14792.5713 kcal/mol (14769.7913 without restraints) Performing minimization step: 786. Total energy = 14779.2199 kcal/mol (14756.4455 without restraints) Performing minimization step: 787. Total energy = 14765.8954 kcal/mol (14743.1269 without restraints) Performing minimization step: 788. Total energy = 14752.5973 kcal/mol (14729.8346 without restraints) Performing minimization step: 789. Total energy = 14739.3258 kcal/mol (14716.5688 without restraints) Performing minimization step: 790. Total energy = 14726.0809 kcal/mol (14703.3298 without restraints) Performing minimization step: 791. Total energy = 14712.8626 kcal/mol (14690.1172 without restraints) Performing minimization step: 792. Total energy = 14699.6707 kcal/mol (14676.9312 without restraints) Performing minimization step: 793. Total energy = 14686.5046 kcal/mol (14663.7708 without restraints) Performing minimization step: 794. Total energy = 14673.3647 kcal/mol (14650.6368 without restraints) Performing minimization step: 795. Total energy = 14660.2515 kcal/mol (14637.5294 without restraints) Performing minimization step: 796. Total energy = 14647.1642 kcal/mol (14624.4477 without restraints) Performing minimization step: 797. Total energy = 14634.1022 kcal/mol (14611.3914 without restraints) Performing minimization step: 798. Total energy = 14621.0664 kcal/mol (14598.3615 without restraints) Performing minimization step: 799. Total energy = 14608.0567 kcal/mol (14585.3576 without restraints) Performing minimization step: 800. Total energy = 14595.0724 kcal/mol (14572.3790 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 801. Total energy = 14582.1141 kcal/mol (14559.4265 without restraints) Performing minimization step: 802. Total energy = 14569.1821 kcal/mol (14546.5004 without restraints) Performing minimization step: 803. Total energy = 14556.2750 kcal/mol (14533.5988 without restraints) Performing minimization step: 804. Total energy = 14543.3934 kcal/mol (14520.7231 without restraints) Performing minimization step: 805. Total energy = 14530.5371 kcal/mol (14507.8723 without restraints) Performing minimization step: 806. Total energy = 14517.7059 kcal/mol (14495.0467 without restraints) Performing minimization step: 807. Total energy = 14504.8999 kcal/mol (14482.2466 without restraints) Performing minimization step: 808. Total energy = 14492.1193 kcal/mol (14469.4716 without restraints) Performing minimization step: 809. Total energy = 14479.3635 kcal/mol (14456.7216 without restraints) Performing minimization step: 810. Total energy = 14466.6328 kcal/mol (14443.9965 without restraints) Performing minimization step: 811. Total energy = 14453.9267 kcal/mol (14431.2962 without restraints) Performing minimization step: 812. Total energy = 14441.2458 kcal/mol (14418.6209 without restraints) Performing minimization step: 813. Total energy = 14428.5894 kcal/mol (14405.9703 without restraints) Performing minimization step: 814. Total energy = 14415.9581 kcal/mol (14393.3446 without restraints) Performing minimization step: 815. Total energy = 14403.3512 kcal/mol (14380.7434 without restraints) Performing minimization step: 816. Total energy = 14390.7695 kcal/mol (14368.1673 without restraints) Performing minimization step: 817. Total energy = 14378.2117 kcal/mol (14355.6152 without restraints) Performing minimization step: 818. Total energy = 14365.6787 kcal/mol (14343.0878 without restraints) Performing minimization step: 819. Total energy = 14353.1697 kcal/mol (14330.5846 without restraints) Performing minimization step: 820. Total energy = 14340.6857 kcal/mol (14318.1062 without restraints) Performing minimization step: 821. Total energy = 14328.2258 kcal/mol (14305.6519 without restraints) Performing minimization step: 822. Total energy = 14315.7896 kcal/mol (14293.2214 without restraints) Performing minimization step: 823. Total energy = 14303.3777 kcal/mol (14280.8151 without restraints) Performing minimization step: 824. Total energy = 14290.9896 kcal/mol (14268.4327 without restraints) Performing minimization step: 825. Total energy = 14278.6251 kcal/mol (14256.0738 without restraints) Performing minimization step: 826. Total energy = 14266.2848 kcal/mol (14243.7392 without restraints) Performing minimization step: 827. Total energy = 14253.9685 kcal/mol (14231.4286 without restraints) Performing minimization step: 828. Total energy = 14241.6754 kcal/mol (14219.1409 without restraints) Performing minimization step: 829. Total energy = 14229.4063 kcal/mol (14206.8775 without restraints) Performing minimization step: 830. Total energy = 14217.1608 kcal/mol (14194.6375 without restraints) Performing minimization step: 831. Total energy = 14204.9385 kcal/mol (14182.4209 without restraints) Performing minimization step: 832. Total energy = 14192.7400 kcal/mol (14170.2280 without restraints) Performing minimization step: 833. Total energy = 14180.5651 kcal/mol (14158.0587 without restraints) Performing minimization step: 834. Total energy = 14168.4137 kcal/mol (14145.9129 without restraints) Performing minimization step: 835. Total energy = 14156.2857 kcal/mol (14133.7905 without restraints) Performing minimization step: 836. Total energy = 14144.1807 kcal/mol (14121.6911 without restraints) Performing minimization step: 837. Total energy = 14132.0990 kcal/mol (14109.6150 without restraints) Performing minimization step: 838. Total energy = 14120.0402 kcal/mol (14097.5617 without restraints) Performing minimization step: 839. Total energy = 14108.0042 kcal/mol (14085.5313 without restraints) Performing minimization step: 840. Total energy = 14095.9915 kcal/mol (14073.5242 without restraints) Performing minimization step: 841. Total energy = 14084.0015 kcal/mol (14061.5398 without restraints) Performing minimization step: 842. Total energy = 14072.0345 kcal/mol (14049.5783 without restraints) Performing minimization step: 843. Total energy = 14060.0901 kcal/mol (14037.6395 without restraints) Performing minimization step: 844. Total energy = 14048.1683 kcal/mol (14025.7233 without restraints) Performing minimization step: 845. Total energy = 14036.2691 kcal/mol (14013.8296 without restraints) Performing minimization step: 846. Total energy = 14024.3925 kcal/mol (14001.9585 without restraints) Performing minimization step: 847. Total energy = 14012.5384 kcal/mol (13990.1100 without restraints) Performing minimization step: 848. Total energy = 14000.7068 kcal/mol (13978.2839 without restraints) Performing minimization step: 849. Total energy = 13988.8977 kcal/mol (13966.4803 without restraints) Performing minimization step: 850. Total energy = 13977.1107 kcal/mol (13954.6989 without restraints) Performing minimization step: 851. Total energy = 13965.3460 kcal/mol (13942.9397 without restraints) Performing minimization step: 852. Total energy = 13953.6033 kcal/mol (13931.2026 without restraints) Performing minimization step: 853. Total energy = 13941.8821 kcal/mol (13919.4869 without restraints) Performing minimization step: 854. Total energy = 13930.1837 kcal/mol (13907.7940 without restraints) Performing minimization step: 855. Total energy = 13918.5070 kcal/mol (13896.1228 without restraints) Performing minimization step: 856. Total energy = 13906.8527 kcal/mol (13884.4740 without restraints) Performing minimization step: 857. Total energy = 13895.2199 kcal/mol (13872.8466 without restraints) Performing minimization step: 858. Total energy = 13883.6091 kcal/mol (13861.2414 without restraints) Performing minimization step: 859. Total energy = 13872.0200 kcal/mol (13849.6578 without restraints) Performing minimization step: 860. Total energy = 13860.4525 kcal/mol (13838.0958 without restraints) Performing minimization step: 861. Total energy = 13848.9065 kcal/mol (13826.5551 without restraints) Performing minimization step: 862. Total energy = 13837.3823 kcal/mol (13815.0367 without restraints) Performing minimization step: 863. Total energy = 13825.8793 kcal/mol (13803.5391 without restraints) Performing minimization step: 864. Total energy = 13814.3982 kcal/mol (13792.0634 without restraints) Performing minimization step: 865. Total energy = 13802.9381 kcal/mol (13780.6088 without restraints) Performing minimization step: 866. Total energy = 13791.4993 kcal/mol (13769.1755 without restraints) Performing minimization step: 867. Total energy = 13780.0821 kcal/mol (13757.7638 without restraints) Performing minimization step: 868. Total energy = 13768.6857 kcal/mol (13746.3729 without restraints) Performing minimization step: 869. Total energy = 13757.3105 kcal/mol (13735.0031 without restraints) Performing minimization step: 870. Total energy = 13745.9568 kcal/mol (13723.6549 without restraints) Performing minimization step: 871. Total energy = 13734.6237 kcal/mol (13712.3273 without restraints) Performing minimization step: 872. Total energy = 13723.3114 kcal/mol (13701.0204 without restraints) Performing minimization step: 873. Total energy = 13712.0208 kcal/mol (13689.7352 without restraints) Performing minimization step: 874. Total energy = 13700.7503 kcal/mol (13678.4702 without restraints) Performing minimization step: 875. Total energy = 13689.5000 kcal/mol (13667.2254 without restraints) Performing minimization step: 876. Total energy = 13678.2709 kcal/mol (13656.0017 without restraints) Performing minimization step: 877. Total energy = 13667.0624 kcal/mol (13644.7985 without restraints) Performing minimization step: 878. Total energy = 13655.8745 kcal/mol (13633.6162 without restraints) Performing minimization step: 879. Total energy = 13644.7073 kcal/mol (13622.4546 without restraints) Performing minimization step: 880. Total energy = 13633.5606 kcal/mol (13611.3132 without restraints) Performing minimization step: 881. Total energy = 13622.4346 kcal/mol (13600.1926 without restraints) Performing minimization step: 882. Total energy = 13611.3287 kcal/mol (13589.0921 without restraints) Performing minimization step: 883. Total energy = 13600.2435 kcal/mol (13578.0123 without restraints) Performing minimization step: 884. Total energy = 13589.1781 kcal/mol (13566.9524 without restraints) Performing minimization step: 885. Total energy = 13578.1328 kcal/mol (13555.9125 without restraints) Performing minimization step: 886. Total energy = 13567.1072 kcal/mol (13544.8922 without restraints) Performing minimization step: 887. Total energy = 13556.1022 kcal/mol (13533.8926 without restraints) Performing minimization step: 888. Total energy = 13545.1170 kcal/mol (13522.9129 without restraints) Performing minimization step: 889. Total energy = 13534.1517 kcal/mol (13511.9530 without restraints) Performing minimization step: 890. Total energy = 13523.2063 kcal/mol (13501.0128 without restraints) Performing minimization step: 891. Total energy = 13512.2803 kcal/mol (13490.0924 without restraints) Performing minimization step: 892. Total energy = 13501.3746 kcal/mol (13479.1921 without restraints) Performing minimization step: 893. Total energy = 13490.4888 kcal/mol (13468.3117 without restraints) Performing minimization step: 894. Total energy = 13479.6224 kcal/mol (13457.4506 without restraints) Performing minimization step: 895. Total energy = 13468.7756 kcal/mol (13446.6092 without restraints) Performing minimization step: 896. Total energy = 13457.9483 kcal/mol (13435.7874 without restraints) Performing minimization step: 897. Total energy = 13447.1406 kcal/mol (13424.9849 without restraints) Performing minimization step: 898. Total energy = 13436.3522 kcal/mol (13414.2020 without restraints) Performing minimization step: 899. Total energy = 13425.5830 kcal/mol (13403.4382 without restraints) Performing minimization step: 900. Total energy = 13414.8337 kcal/mol (13392.6940 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 901. Total energy = 13404.1032 kcal/mol (13381.9691 without restraints) Performing minimization step: 902. Total energy = 13393.3922 kcal/mol (13371.2636 without restraints) Performing minimization step: 903. Total energy = 13382.7008 kcal/mol (13360.5774 without restraints) Performing minimization step: 904. Total energy = 13372.0279 kcal/mol (13349.9099 without restraints) Performing minimization step: 905. Total energy = 13361.3737 kcal/mol (13339.2608 without restraints) Performing minimization step: 906. Total energy = 13350.7389 kcal/mol (13328.6316 without restraints) Performing minimization step: 907. Total energy = 13340.1231 kcal/mol (13318.0211 without restraints) Performing minimization step: 908. Total energy = 13329.5259 kcal/mol (13307.4293 without restraints) Performing minimization step: 909. Total energy = 13318.9479 kcal/mol (13296.8565 without restraints) Performing minimization step: 910. Total energy = 13308.3887 kcal/mol (13286.3027 without restraints) Performing minimization step: 911. Total energy = 13297.8479 kcal/mol (13275.7673 without restraints) Performing minimization step: 912. Total energy = 13287.3261 kcal/mol (13265.2509 without restraints) Performing minimization step: 913. Total energy = 13276.8231 kcal/mol (13254.7532 without restraints) Performing minimization step: 914. Total energy = 13266.3378 kcal/mol (13244.2733 without restraints) Performing minimization step: 915. Total energy = 13255.8714 kcal/mol (13233.8121 without restraints) Performing minimization step: 916. Total energy = 13245.4236 kcal/mol (13223.3697 without restraints) Performing minimization step: 917. Total energy = 13234.9943 kcal/mol (13212.9457 without restraints) Performing minimization step: 918. Total energy = 13224.5833 kcal/mol (13202.5401 without restraints) Performing minimization step: 919. Total energy = 13214.1907 kcal/mol (13192.1527 without restraints) Performing minimization step: 920. Total energy = 13203.8159 kcal/mol (13181.7832 without restraints) Performing minimization step: 921. Total energy = 13193.4597 kcal/mol (13171.4324 without restraints) Performing minimization step: 922. Total energy = 13183.1216 kcal/mol (13161.0996 without restraints) Performing minimization step: 923. Total energy = 13172.8020 kcal/mol (13150.7853 without restraints) Performing minimization step: 924. Total energy = 13162.5004 kcal/mol (13140.4890 without restraints) Performing minimization step: 925. Total energy = 13152.2163 kcal/mol (13130.2103 without restraints) Performing minimization step: 926. Total energy = 13141.9503 kcal/mol (13119.9495 without restraints) Performing minimization step: 927. Total energy = 13131.7023 kcal/mol (13109.7068 without restraints) Performing minimization step: 928. Total energy = 13121.4722 kcal/mol (13099.4819 without restraints) Performing minimization step: 929. Total energy = 13111.2598 kcal/mol (13089.2749 without restraints) Performing minimization step: 930. Total energy = 13101.0653 kcal/mol (13079.0857 without restraints) Performing minimization step: 931. Total energy = 13090.8885 kcal/mol (13068.9142 without restraints) Performing minimization step: 932. Total energy = 13080.7297 kcal/mol (13058.7606 without restraints) Performing minimization step: 933. Total energy = 13070.5878 kcal/mol (13048.6241 without restraints) Performing minimization step: 934. Total energy = 13060.4638 kcal/mol (13038.5052 without restraints) Performing minimization step: 935. Total energy = 13050.3573 kcal/mol (13028.4043 without restraints) Performing minimization step: 936. Total energy = 13040.2683 kcal/mol (13018.3204 without restraints) Performing minimization step: 937. Total energy = 13030.1967 kcal/mol (13008.2540 without restraints) Performing minimization step: 938. Total energy = 13020.1424 kcal/mol (12998.2050 without restraints) Performing minimization step: 939. Total energy = 13010.1054 kcal/mol (12988.1733 without restraints) Performing minimization step: 940. Total energy = 13000.0856 kcal/mol (12978.1588 without restraints) Performing minimization step: 941. Total energy = 12990.0828 kcal/mol (12968.1612 without restraints) Performing minimization step: 942. Total energy = 12980.0976 kcal/mol (12958.1814 without restraints) Performing minimization step: 943. Total energy = 12970.1296 kcal/mol (12948.2186 without restraints) Performing minimization step: 944. Total energy = 12960.1782 kcal/mol (12938.2724 without restraints) Performing minimization step: 945. Total energy = 12950.2442 kcal/mol (12928.3437 without restraints) Performing minimization step: 946. Total energy = 12940.3270 kcal/mol (12918.4317 without restraints) Performing minimization step: 947. Total energy = 12930.4267 kcal/mol (12908.5367 without restraints) Performing minimization step: 948. Total energy = 12920.5437 kcal/mol (12898.6588 without restraints) Performing minimization step: 949. Total energy = 12910.6770 kcal/mol (12888.7975 without restraints) Performing minimization step: 950. Total energy = 12900.8272 kcal/mol (12878.9529 without restraints) Performing minimization step: 951. Total energy = 12890.9943 kcal/mol (12869.1252 without restraints) Performing minimization step: 952. Total energy = 12881.1778 kcal/mol (12859.3140 without restraints) Performing minimization step: 953. Total energy = 12871.3781 kcal/mol (12849.5195 without restraints) Performing minimization step: 954. Total energy = 12861.5953 kcal/mol (12839.7421 without restraints) Performing minimization step: 955. Total energy = 12851.8290 kcal/mol (12829.9809 without restraints) Performing minimization step: 956. Total energy = 12842.0789 kcal/mol (12820.2360 without restraints) Performing minimization step: 957. Total energy = 12832.3453 kcal/mol (12810.5077 without restraints) Performing minimization step: 958. Total energy = 12822.6282 kcal/mol (12800.7958 without restraints) Performing minimization step: 959. Total energy = 12812.9279 kcal/mol (12791.1007 without restraints) Performing minimization step: 960. Total energy = 12803.2435 kcal/mol (12781.4215 without restraints) Performing minimization step: 961. Total energy = 12793.5755 kcal/mol (12771.7588 without restraints) Performing minimization step: 962. Total energy = 12783.9244 kcal/mol (12762.1130 without restraints) Performing minimization step: 963. Total energy = 12774.2888 kcal/mol (12752.4825 without restraints) Performing minimization step: 964. Total energy = 12764.6692 kcal/mol (12742.8682 without restraints) Performing minimization step: 965. Total energy = 12755.0663 kcal/mol (12733.2705 without restraints) Performing minimization step: 966. Total energy = 12745.4788 kcal/mol (12723.6882 without restraints) Performing minimization step: 967. Total energy = 12735.9074 kcal/mol (12714.1220 without restraints) Performing minimization step: 968. Total energy = 12726.3517 kcal/mol (12704.5714 without restraints) Performing minimization step: 969. Total energy = 12716.8121 kcal/mol (12695.0371 without restraints) Performing minimization step: 970. Total energy = 12707.2887 kcal/mol (12685.5191 without restraints) Performing minimization step: 971. Total energy = 12697.7812 kcal/mol (12676.0167 without restraints) Performing minimization step: 972. Total energy = 12688.2895 kcal/mol (12666.5301 without restraints) Performing minimization step: 973. Total energy = 12678.8133 kcal/mol (12657.0591 without restraints) Performing minimization step: 974. Total energy = 12669.3529 kcal/mol (12647.6039 without restraints) Performing minimization step: 975. Total energy = 12659.9083 kcal/mol (12638.1646 without restraints) Performing minimization step: 976. Total energy = 12650.4792 kcal/mol (12628.7406 without restraints) Performing minimization step: 977. Total energy = 12641.0659 kcal/mol (12619.3325 without restraints) Performing minimization step: 978. Total energy = 12631.6679 kcal/mol (12609.9397 without restraints) Performing minimization step: 979. Total energy = 12622.2854 kcal/mol (12600.5624 without restraints) Performing minimization step: 980. Total energy = 12612.9183 kcal/mol (12591.2005 without restraints) Performing minimization step: 981. Total energy = 12603.5667 kcal/mol (12581.8541 without restraints) Performing minimization step: 982. Total energy = 12594.2305 kcal/mol (12572.5231 without restraints) Performing minimization step: 983. Total energy = 12584.9100 kcal/mol (12563.2078 without restraints) Performing minimization step: 984. Total energy = 12575.6045 kcal/mol (12553.9075 without restraints) Performing minimization step: 985. Total energy = 12566.3142 kcal/mol (12544.6223 without restraints) Performing minimization step: 986. Total energy = 12557.0386 kcal/mol (12535.3518 without restraints) Performing minimization step: 987. Total energy = 12547.7786 kcal/mol (12526.0972 without restraints) Performing minimization step: 988. Total energy = 12538.5337 kcal/mol (12516.8573 without restraints) Performing minimization step: 989. Total energy = 12529.3040 kcal/mol (12507.6328 without restraints) Performing minimization step: 990. Total energy = 12520.0898 kcal/mol (12498.4238 without restraints) Performing minimization step: 991. Total energy = 12510.8901 kcal/mol (12489.2293 without restraints) Performing minimization step: 992. Total energy = 12501.7057 kcal/mol (12480.0502 without restraints) Performing minimization step: 993. Total energy = 12492.5362 kcal/mol (12470.8857 without restraints) Performing minimization step: 994. Total energy = 12483.3814 kcal/mol (12461.7362 without restraints) Performing minimization step: 995. Total energy = 12474.2414 kcal/mol (12452.6013 without restraints) Performing minimization step: 996. Total energy = 12465.1164 kcal/mol (12443.4813 without restraints) Performing minimization step: 997. Total energy = 12456.0059 kcal/mol (12434.3760 without restraints) Performing minimization step: 998. Total energy = 12446.9102 kcal/mol (12425.2855 without restraints) Performing minimization step: 999. Total energy = 12437.8292 kcal/mol (12416.2098 without restraints) Performing minimization step: 1000. Total energy = 12428.7627 kcal/mol (12407.1483 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 12419.7107 kcal/mol (12398.1015 without restraints) Performing minimization step: 1002. Total energy = 12410.6735 kcal/mol (12389.0695 without restraints) Performing minimization step: 1003. Total energy = 12401.6509 kcal/mol (12380.0520 without restraints) Performing minimization step: 1004. Total energy = 12392.6425 kcal/mol (12371.0487 without restraints) Performing minimization step: 1005. Total energy = 12383.6488 kcal/mol (12362.0602 without restraints) Performing minimization step: 1006. Total energy = 12374.6695 kcal/mol (12353.0861 without restraints) Performing minimization step: 1007. Total energy = 12365.7046 kcal/mol (12344.1263 without restraints) Performing minimization step: 1008. Total energy = 12356.7543 kcal/mol (12335.1811 without restraints) Performing minimization step: 1009. Total energy = 12347.8187 kcal/mol (12326.2507 without restraints) Performing minimization step: 1010. Total energy = 12338.8967 kcal/mol (12317.3338 without restraints) Performing minimization step: 1011. Total energy = 12329.9894 kcal/mol (12308.4318 without restraints) Performing minimization step: 1012. Total energy = 12321.0956 kcal/mol (12299.5430 without restraints) Performing minimization step: 1013. Total energy = 12312.2163 kcal/mol (12290.6688 without restraints) Performing minimization step: 1014. Total energy = 12303.3510 kcal/mol (12281.8086 without restraints) Performing minimization step: 1015. Total energy = 12294.4994 kcal/mol (12272.9621 without restraints) Performing minimization step: 1016. Total energy = 12285.6622 kcal/mol (12264.1301 without restraints) Performing minimization step: 1017. Total energy = 12276.8391 kcal/mol (12255.3122 without restraints) Performing minimization step: 1018. Total energy = 12268.0298 kcal/mol (12246.5080 without restraints) Performing minimization step: 1019. Total energy = 12259.2346 kcal/mol (12237.7180 without restraints) Performing minimization step: 1020. Total energy = 12250.4530 kcal/mol (12228.9415 without restraints) Performing minimization step: 1021. Total energy = 12241.6856 kcal/mol (12220.1792 without restraints) Performing minimization step: 1022. Total energy = 12232.9321 kcal/mol (12211.4308 without restraints) Performing minimization step: 1023. Total energy = 12224.1923 kcal/mol (12202.6961 without restraints) Performing minimization step: 1024. Total energy = 12215.4662 kcal/mol (12193.9752 without restraints) Performing minimization step: 1025. Total energy = 12206.7540 kcal/mol (12185.2681 without restraints) Performing minimization step: 1026. Total energy = 12198.0553 kcal/mol (12176.5745 without restraints) Performing minimization step: 1027. Total energy = 12189.3703 kcal/mol (12167.8947 without restraints) Performing minimization step: 1028. Total energy = 12180.6987 kcal/mol (12159.2282 without restraints) Performing minimization step: 1029. Total energy = 12172.0407 kcal/mol (12150.5753 without restraints) Performing minimization step: 1030. Total energy = 12163.3965 kcal/mol (12141.9362 without restraints) Performing minimization step: 1031. Total energy = 12154.7657 kcal/mol (12133.3105 without restraints) Performing minimization step: 1032. Total energy = 12146.1481 kcal/mol (12124.6980 without restraints) Performing minimization step: 1033. Total energy = 12137.5443 kcal/mol (12116.0993 without restraints) Performing minimization step: 1034. Total energy = 12128.9539 kcal/mol (12107.5140 without restraints) Performing minimization step: 1035. Total energy = 12120.3770 kcal/mol (12098.9423 without restraints) Performing minimization step: 1036. Total energy = 12111.8132 kcal/mol (12090.3834 without restraints) Performing minimization step: 1037. Total energy = 12103.2629 kcal/mol (12081.8385 without restraints) Performing minimization step: 1038. Total energy = 12094.7258 kcal/mol (12073.3063 without restraints) Performing minimization step: 1039. Total energy = 12086.2018 kcal/mol (12064.7875 without restraints) Performing minimization step: 1040. Total energy = 12077.6914 kcal/mol (12056.2822 without restraints) Performing minimization step: 1041. Total energy = 12069.1934 kcal/mol (12047.7892 without restraints) Performing minimization step: 1042. Total energy = 12060.7091 kcal/mol (12039.3101 without restraints) Performing minimization step: 1043. Total energy = 12052.2379 kcal/mol (12030.8441 without restraints) Performing minimization step: 1044. Total energy = 12043.7798 kcal/mol (12022.3910 without restraints) Performing minimization step: 1045. Total energy = 12035.3347 kcal/mol (12013.9510 without restraints) Performing minimization step: 1046. Total energy = 12026.9030 kcal/mol (12005.5243 without restraints) Performing minimization step: 1047. Total energy = 12018.4839 kcal/mol (11997.1104 without restraints) Performing minimization step: 1048. Total energy = 12010.0777 kcal/mol (11988.7093 without restraints) Performing minimization step: 1049. Total energy = 12001.6849 kcal/mol (11980.3216 without restraints) Performing minimization step: 1050. Total energy = 11993.3044 kcal/mol (11971.9460 without restraints) Performing minimization step: 1051. Total energy = 11984.9368 kcal/mol (11963.5836 without restraints) Performing minimization step: 1052. Total energy = 11976.5824 kcal/mol (11955.2344 without restraints) Performing minimization step: 1053. Total energy = 11968.2405 kcal/mol (11946.8976 without restraints) Performing minimization step: 1054. Total energy = 11959.9116 kcal/mol (11938.5737 without restraints) Performing minimization step: 1055. Total energy = 11951.5951 kcal/mol (11930.2625 without restraints) Performing minimization step: 1056. Total energy = 11943.2914 kcal/mol (11921.9638 without restraints) Performing minimization step: 1057. Total energy = 11935.0005 kcal/mol (11913.6779 without restraints) Performing minimization step: 1058. Total energy = 11926.7227 kcal/mol (11905.4052 without restraints) Performing minimization step: 1059. Total energy = 11918.4569 kcal/mol (11897.1444 without restraints) Performing minimization step: 1060. Total energy = 11910.2036 kcal/mol (11888.8962 without restraints) Performing minimization step: 1061. Total energy = 11901.9631 kcal/mol (11880.6608 without restraints) Performing minimization step: 1062. Total energy = 11893.7349 kcal/mol (11872.4379 without restraints) Performing minimization step: 1063. Total energy = 11885.5191 kcal/mol (11864.2270 without restraints) Performing minimization step: 1064. Total energy = 11877.3156 kcal/mol (11856.0285 without restraints) Performing minimization step: 1065. Total energy = 11869.1245 kcal/mol (11847.8426 without restraints) Performing minimization step: 1066. Total energy = 11860.9460 kcal/mol (11839.6692 without restraints) Performing minimization step: 1067. Total energy = 11852.7802 kcal/mol (11831.5084 without restraints) Performing minimization step: 1068. Total energy = 11844.6262 kcal/mol (11823.3595 without restraints) Performing minimization step: 1069. Total energy = 11836.4848 kcal/mol (11815.2232 without restraints) Performing minimization step: 1070. Total energy = 11828.3555 kcal/mol (11807.0990 without restraints) Performing minimization step: 1071. Total energy = 11820.2384 kcal/mol (11798.9869 without restraints) Performing minimization step: 1072. Total energy = 11812.1335 kcal/mol (11790.8871 without restraints) Performing minimization step: 1073. Total energy = 11804.0402 kcal/mol (11782.7990 without restraints) Performing minimization step: 1074. Total energy = 11795.9594 kcal/mol (11774.7231 without restraints) Performing minimization step: 1075. Total energy = 11787.8908 kcal/mol (11766.6596 without restraints) Performing minimization step: 1076. Total energy = 11779.8342 kcal/mol (11758.6081 without restraints) Performing minimization step: 1077. Total energy = 11771.7904 kcal/mol (11750.5693 without restraints) Performing minimization step: 1078. Total energy = 11763.7579 kcal/mol (11742.5420 without restraints) Performing minimization step: 1079. Total energy = 11755.7377 kcal/mol (11734.5270 without restraints) Performing minimization step: 1080. Total energy = 11747.7293 kcal/mol (11726.5235 without restraints) Performing minimization step: 1081. Total energy = 11739.7323 kcal/mol (11718.5316 without restraints) Performing minimization step: 1082. Total energy = 11731.7478 kcal/mol (11710.5522 without restraints) Performing minimization step: 1083. Total energy = 11723.7754 kcal/mol (11702.5847 without restraints) Performing minimization step: 1084. Total energy = 11715.8146 kcal/mol (11694.6291 without restraints) Performing minimization step: 1085. Total energy = 11707.8659 kcal/mol (11686.6855 without restraints) Performing minimization step: 1086. Total energy = 11699.9289 kcal/mol (11678.7536 without restraints) Performing minimization step: 1087. Total energy = 11692.0038 kcal/mol (11670.8335 without restraints) Performing minimization step: 1088. Total energy = 11684.0903 kcal/mol (11662.9250 without restraints) Performing minimization step: 1089. Total energy = 11676.1884 kcal/mol (11655.0282 without restraints) Performing minimization step: 1090. Total energy = 11668.2982 kcal/mol (11647.1431 without restraints) Performing minimization step: 1091. Total energy = 11660.4198 kcal/mol (11639.2696 without restraints) Performing minimization step: 1092. Total energy = 11652.5524 kcal/mol (11631.4074 without restraints) Performing minimization step: 1093. Total energy = 11644.6970 kcal/mol (11623.5571 without restraints) Performing minimization step: 1094. Total energy = 11636.8536 kcal/mol (11615.7187 without restraints) Performing minimization step: 1095. Total energy = 11629.0215 kcal/mol (11607.8918 without restraints) Performing minimization step: 1096. Total energy = 11621.2009 kcal/mol (11600.0762 without restraints) Performing minimization step: 1097. Total energy = 11613.3917 kcal/mol (11592.2720 without restraints) Performing minimization step: 1098. Total energy = 11605.5940 kcal/mol (11584.4793 without restraints) Performing minimization step: 1099. Total energy = 11597.8075 kcal/mol (11576.6979 without restraints) Performing minimization step: 1100. Total energy = 11590.0327 kcal/mol (11568.9281 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 11582.2693 kcal/mol (11561.1697 without restraints) Performing minimization step: 1102. Total energy = 11574.5166 kcal/mol (11553.4219 without restraints) Performing minimization step: 1103. Total energy = 11566.7759 kcal/mol (11545.6864 without restraints) Performing minimization step: 1104. Total energy = 11559.0465 kcal/mol (11537.9619 without restraints) Performing minimization step: 1105. Total energy = 11551.3281 kcal/mol (11530.2488 without restraints) Performing minimization step: 1106. Total energy = 11543.6212 kcal/mol (11522.5470 without restraints) Performing minimization step: 1107. Total energy = 11535.9256 kcal/mol (11514.8564 without restraints) Performing minimization step: 1108. Total energy = 11528.2412 kcal/mol (11507.1770 without restraints) Performing minimization step: 1109. Total energy = 11520.5678 kcal/mol (11499.5087 without restraints) Performing minimization step: 1110. Total energy = 11512.9056 kcal/mol (11491.8514 without restraints) Performing minimization step: 1111. Total energy = 11505.2545 kcal/mol (11484.2055 without restraints) Performing minimization step: 1112. Total energy = 11497.6147 kcal/mol (11476.5708 without restraints) Performing minimization step: 1113. Total energy = 11489.9858 kcal/mol (11468.9470 without restraints) Performing minimization step: 1114. Total energy = 11482.3684 kcal/mol (11461.3346 without restraints) Performing minimization step: 1115. Total energy = 11474.7618 kcal/mol (11453.7329 without restraints) Performing minimization step: 1116. Total energy = 11467.1659 kcal/mol (11446.1421 without restraints) Performing minimization step: 1117. Total energy = 11459.5808 kcal/mol (11438.5621 without restraints) Performing minimization step: 1118. Total energy = 11452.0068 kcal/mol (11430.9931 without restraints) Performing minimization step: 1119. Total energy = 11444.4443 kcal/mol (11423.4358 without restraints) Performing minimization step: 1120. Total energy = 11436.8923 kcal/mol (11415.8887 without restraints) Performing minimization step: 1121. Total energy = 11429.3513 kcal/mol (11408.3526 without restraints) Performing minimization step: 1122. Total energy = 11421.8211 kcal/mol (11400.8276 without restraints) Performing minimization step: 1123. Total energy = 11414.3020 kcal/mol (11393.3133 without restraints) Performing minimization step: 1124. Total energy = 11406.7933 kcal/mol (11385.8098 without restraints) Performing minimization step: 1125. Total energy = 11399.2954 kcal/mol (11378.3170 without restraints) Performing minimization step: 1126. Total energy = 11391.8084 kcal/mol (11370.8351 without restraints) Performing minimization step: 1127. Total energy = 11384.3326 kcal/mol (11363.3643 without restraints) Performing minimization step: 1128. Total energy = 11376.8673 kcal/mol (11355.9040 without restraints) Performing minimization step: 1129. Total energy = 11369.4122 kcal/mol (11348.4539 without restraints) Performing minimization step: 1130. Total energy = 11361.9677 kcal/mol (11341.0145 without restraints) Performing minimization step: 1131. Total energy = 11354.5344 kcal/mol (11333.5862 without restraints) Performing minimization step: 1132. Total energy = 11347.1115 kcal/mol (11326.1684 without restraints) Performing minimization step: 1133. Total energy = 11339.6990 kcal/mol (11318.7609 without restraints) Performing minimization step: 1134. Total energy = 11332.2972 kcal/mol (11311.3641 without restraints) Performing minimization step: 1135. Total energy = 11324.9059 kcal/mol (11303.9778 without restraints) Performing minimization step: 1136. Total energy = 11317.5252 kcal/mol (11296.6023 without restraints) Performing minimization step: 1137. Total energy = 11310.1555 kcal/mol (11289.2376 without restraints) Performing minimization step: 1138. Total energy = 11302.7958 kcal/mol (11281.8829 without restraints) Performing minimization step: 1139. Total energy = 11295.4463 kcal/mol (11274.5385 without restraints) Performing minimization step: 1140. Total energy = 11288.1074 kcal/mol (11267.2046 without restraints) Performing minimization step: 1141. Total energy = 11280.7794 kcal/mol (11259.8816 without restraints) Performing minimization step: 1142. Total energy = 11273.4609 kcal/mol (11252.5681 without restraints) Performing minimization step: 1143. Total energy = 11266.1533 kcal/mol (11245.2656 without restraints) Performing minimization step: 1144. Total energy = 11258.8559 kcal/mol (11237.9731 without restraints) Performing minimization step: 1145. Total energy = 11251.5690 kcal/mol (11230.6915 without restraints) Performing minimization step: 1146. Total energy = 11244.2924 kcal/mol (11223.4198 without restraints) Performing minimization step: 1147. Total energy = 11237.0260 kcal/mol (11216.1584 without restraints) Performing minimization step: 1148. Total energy = 11229.7700 kcal/mol (11208.9074 without restraints) Performing minimization step: 1149. Total energy = 11222.5239 kcal/mol (11201.6663 without restraints) Performing minimization step: 1150. Total energy = 11215.2881 kcal/mol (11194.4356 without restraints) Performing minimization step: 1151. Total energy = 11208.0625 kcal/mol (11187.2150 without restraints) Performing minimization step: 1152. Total energy = 11200.8471 kcal/mol (11180.0046 without restraints) Performing minimization step: 1153. Total energy = 11193.6418 kcal/mol (11172.8044 without restraints) Performing minimization step: 1154. Total energy = 11186.4466 kcal/mol (11165.6143 without restraints) Performing minimization step: 1155. Total energy = 11179.2620 kcal/mol (11158.4346 without restraints) Performing minimization step: 1156. Total energy = 11172.0872 kcal/mol (11151.2649 without restraints) Performing minimization step: 1157. Total energy = 11164.9228 kcal/mol (11144.1056 without restraints) Performing minimization step: 1158. Total energy = 11157.7676 kcal/mol (11136.9554 without restraints) Performing minimization step: 1159. Total energy = 11150.6228 kcal/mol (11129.8155 without restraints) Performing minimization step: 1160. Total energy = 11143.4877 kcal/mol (11122.6855 without restraints) Performing minimization step: 1161. Total energy = 11136.3630 kcal/mol (11115.5658 without restraints) Performing minimization step: 1162. Total energy = 11129.2484 kcal/mol (11108.4564 without restraints) Performing minimization step: 1163. Total energy = 11122.1435 kcal/mol (11101.3564 without restraints) Performing minimization step: 1164. Total energy = 11115.0486 kcal/mol (11094.2665 without restraints) Performing minimization step: 1165. Total energy = 11107.9630 kcal/mol (11087.1859 without restraints) Performing minimization step: 1166. Total energy = 11100.8879 kcal/mol (11080.1157 without restraints) Performing minimization step: 1167. Total energy = 11093.8222 kcal/mol (11073.0552 without restraints) Performing minimization step: 1168. Total energy = 11086.7665 kcal/mol (11066.0045 without restraints) Performing minimization step: 1169. Total energy = 11079.7205 kcal/mol (11058.9635 without restraints) Performing minimization step: 1170. Total energy = 11072.6846 kcal/mol (11051.9326 without restraints) Performing minimization step: 1171. Total energy = 11065.6580 kcal/mol (11044.9110 without restraints) Performing minimization step: 1172. Total energy = 11058.6414 kcal/mol (11037.8995 without restraints) Performing minimization step: 1173. Total energy = 11051.6347 kcal/mol (11030.8979 without restraints) Performing minimization step: 1174. Total energy = 11044.6377 kcal/mol (11023.9059 without restraints) Performing minimization step: 1175. Total energy = 11037.6502 kcal/mol (11016.9234 without restraints) Performing minimization step: 1176. Total energy = 11030.6723 kcal/mol (11009.9505 without restraints) Performing minimization step: 1177. Total energy = 11023.7040 kcal/mol (11002.9873 without restraints) Performing minimization step: 1178. Total energy = 11016.7456 kcal/mol (10996.0339 without restraints) Performing minimization step: 1179. Total energy = 11009.7963 kcal/mol (10989.0896 without restraints) Performing minimization step: 1180. Total energy = 11002.8574 kcal/mol (10982.1556 without restraints) Performing minimization step: 1181. Total energy = 10995.9274 kcal/mol (10975.2307 without restraints) Performing minimization step: 1182. Total energy = 10989.0072 kcal/mol (10968.3156 without restraints) Performing minimization step: 1183. Total energy = 10982.0970 kcal/mol (10961.4104 without restraints) Performing minimization step: 1184. Total energy = 10975.1956 kcal/mol (10954.5141 without restraints) Performing minimization step: 1185. Total energy = 10968.3035 kcal/mol (10947.6269 without restraints) Performing minimization step: 1186. Total energy = 10961.4211 kcal/mol (10940.7496 without restraints) Performing minimization step: 1187. Total energy = 10954.5481 kcal/mol (10933.8815 without restraints) Performing minimization step: 1188. Total energy = 10947.6842 kcal/mol (10927.0227 without restraints) Performing minimization step: 1189. Total energy = 10940.8296 kcal/mol (10920.1731 without restraints) Performing minimization step: 1190. Total energy = 10933.9850 kcal/mol (10913.3336 without restraints) Performing minimization step: 1191. Total energy = 10927.1497 kcal/mol (10906.5032 without restraints) Performing minimization step: 1192. Total energy = 10920.3236 kcal/mol (10899.6822 without restraints) Performing minimization step: 1193. Total energy = 10913.5067 kcal/mol (10892.8703 without restraints) Performing minimization step: 1194. Total energy = 10906.6993 kcal/mol (10886.0679 without restraints) Performing minimization step: 1195. Total energy = 10899.9018 kcal/mol (10879.2755 without restraints) Performing minimization step: 1196. Total energy = 10893.1132 kcal/mol (10872.4919 without restraints) Performing minimization step: 1197. Total energy = 10886.3335 kcal/mol (10865.7172 without restraints) Performing minimization step: 1198. Total energy = 10879.5631 kcal/mol (10858.9518 without restraints) Performing minimization step: 1199. Total energy = 10872.8022 kcal/mol (10852.1960 without restraints) Performing minimization step: 1200. Total energy = 10866.0501 kcal/mol (10845.4489 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 10859.3073 kcal/mol (10838.7111 without restraints) Performing minimization step: 1202. Total energy = 10852.5739 kcal/mol (10831.9827 without restraints) Performing minimization step: 1203. Total energy = 10845.8494 kcal/mol (10825.2632 without restraints) Performing minimization step: 1204. Total energy = 10839.1340 kcal/mol (10818.5529 without restraints) Performing minimization step: 1205. Total energy = 10832.4280 kcal/mol (10811.8518 without restraints) Performing minimization step: 1206. Total energy = 10825.7306 kcal/mol (10805.1593 without restraints) Performing minimization step: 1207. Total energy = 10819.0421 kcal/mol (10798.4760 without restraints) Performing minimization step: 1208. Total energy = 10812.3631 kcal/mol (10791.8021 without restraints) Performing minimization step: 1209. Total energy = 10805.6931 kcal/mol (10785.1371 without restraints) Performing minimization step: 1210. Total energy = 10799.0322 kcal/mol (10778.4811 without restraints) Performing minimization step: 1211. Total energy = 10792.3802 kcal/mol (10771.8341 without restraints) Performing minimization step: 1212. Total energy = 10785.7366 kcal/mol (10765.1956 without restraints) Performing minimization step: 1213. Total energy = 10779.1024 kcal/mol (10758.5664 without restraints) Performing minimization step: 1214. Total energy = 10772.4774 kcal/mol (10751.9465 without restraints) Performing minimization step: 1215. Total energy = 10765.8613 kcal/mol (10745.3353 without restraints) Performing minimization step: 1216. Total energy = 10759.2540 kcal/mol (10738.7331 without restraints) Performing minimization step: 1217. Total energy = 10752.6558 kcal/mol (10732.1400 without restraints) Performing minimization step: 1218. Total energy = 10746.0664 kcal/mol (10725.5555 without restraints) Performing minimization step: 1219. Total energy = 10739.4853 kcal/mol (10718.9794 without restraints) Performing minimization step: 1220. Total energy = 10732.9135 kcal/mol (10712.4126 without restraints) Performing minimization step: 1221. Total energy = 10726.3504 kcal/mol (10705.8545 without restraints) Performing minimization step: 1222. Total energy = 10719.7960 kcal/mol (10699.3052 without restraints) Performing minimization step: 1223. Total energy = 10713.2506 kcal/mol (10692.7648 without restraints) Performing minimization step: 1224. Total energy = 10706.7143 kcal/mol (10686.2335 without restraints) Performing minimization step: 1225. Total energy = 10700.1866 kcal/mol (10679.7109 without restraints) Performing minimization step: 1226. Total energy = 10693.6674 kcal/mol (10673.1967 without restraints) Performing minimization step: 1227. Total energy = 10687.1565 kcal/mol (10666.6907 without restraints) Performing minimization step: 1228. Total energy = 10680.6544 kcal/mol (10660.1937 without restraints) Performing minimization step: 1229. Total energy = 10674.1619 kcal/mol (10653.7063 without restraints) Performing minimization step: 1230. Total energy = 10667.6775 kcal/mol (10647.2269 without restraints) Performing minimization step: 1231. Total energy = 10661.2014 kcal/mol (10640.7557 without restraints) Performing minimization step: 1232. Total energy = 10654.7346 kcal/mol (10634.2940 without restraints) Performing minimization step: 1233. Total energy = 10648.2758 kcal/mol (10627.8402 without restraints) Performing minimization step: 1234. Total energy = 10641.8261 kcal/mol (10621.3955 without restraints) Performing minimization step: 1235. Total energy = 10635.3849 kcal/mol (10614.9593 without restraints) Performing minimization step: 1236. Total energy = 10628.9521 kcal/mol (10608.5316 without restraints) Performing minimization step: 1237. Total energy = 10622.5282 kcal/mol (10602.1127 without restraints) Performing minimization step: 1238. Total energy = 10616.1127 kcal/mol (10595.7022 without restraints) Performing minimization step: 1239. Total energy = 10609.7055 kcal/mol (10589.3000 without restraints) Performing minimization step: 1240. Total energy = 10603.3067 kcal/mol (10582.9062 without restraints) Performing minimization step: 1241. Total energy = 10596.9164 kcal/mol (10576.5209 without restraints) Performing minimization step: 1242. Total energy = 10590.5346 kcal/mol (10570.1442 without restraints) Performing minimization step: 1243. Total energy = 10584.1614 kcal/mol (10563.7760 without restraints) Performing minimization step: 1244. Total energy = 10577.7963 kcal/mol (10557.4159 without restraints) Performing minimization step: 1245. Total energy = 10571.4398 kcal/mol (10551.0644 without restraints) Performing minimization step: 1246. Total energy = 10565.0916 kcal/mol (10544.7212 without restraints) Performing minimization step: 1247. Total energy = 10558.7521 kcal/mol (10538.3869 without restraints) Performing minimization step: 1248. Total energy = 10552.4210 kcal/mol (10532.0606 without restraints) Performing minimization step: 1249. Total energy = 10546.0976 kcal/mol (10525.7423 without restraints) Performing minimization step: 1250. Total energy = 10539.7831 kcal/mol (10519.4328 without restraints) Performing minimization step: 1251. Total energy = 10533.4765 kcal/mol (10513.1311 without restraints) Performing minimization step: 1252. Total energy = 10527.1785 kcal/mol (10506.8382 without restraints) Performing minimization step: 1253. Total energy = 10520.8889 kcal/mol (10500.5536 without restraints) Performing minimization step: 1254. Total energy = 10514.6077 kcal/mol (10494.2774 without restraints) Performing minimization step: 1255. Total energy = 10508.3348 kcal/mol (10488.0097 without restraints) Performing minimization step: 1256. Total energy = 10502.0699 kcal/mol (10481.7498 without restraints) Performing minimization step: 1257. Total energy = 10495.8133 kcal/mol (10475.4982 without restraints) Performing minimization step: 1258. Total energy = 10489.5649 kcal/mol (10469.2548 without restraints) Performing minimization step: 1259. Total energy = 10483.3245 kcal/mol (10463.0194 without restraints) Performing minimization step: 1260. Total energy = 10477.0933 kcal/mol (10456.7932 without restraints) Performing minimization step: 1261. Total energy = 10470.8698 kcal/mol (10450.5748 without restraints) Performing minimization step: 1262. Total energy = 10464.6542 kcal/mol (10444.3641 without restraints) Performing minimization step: 1263. Total energy = 10458.4466 kcal/mol (10438.1616 without restraints) Performing minimization step: 1264. Total energy = 10452.2464 kcal/mol (10431.9663 without restraints) Performing minimization step: 1265. Total energy = 10446.0550 kcal/mol (10425.7799 without restraints) Performing minimization step: 1266. Total energy = 10439.8718 kcal/mol (10419.6018 without restraints) Performing minimization step: 1267. Total energy = 10433.6960 kcal/mol (10413.4310 without restraints) Performing minimization step: 1268. Total energy = 10427.5289 kcal/mol (10407.2689 without restraints) Performing minimization step: 1269. Total energy = 10421.3697 kcal/mol (10401.1148 without restraints) Performing minimization step: 1270. Total energy = 10415.2186 kcal/mol (10394.9687 without restraints) Performing minimization step: 1271. Total energy = 10409.0754 kcal/mol (10388.8305 without restraints) Performing minimization step: 1272. Total energy = 10402.9404 kcal/mol (10382.7006 without restraints) Performing minimization step: 1273. Total energy = 10396.8134 kcal/mol (10376.5785 without restraints) Performing minimization step: 1274. Total energy = 10390.6946 kcal/mol (10370.4647 without restraints) Performing minimization step: 1275. Total energy = 10384.5837 kcal/mol (10364.3588 without restraints) Performing minimization step: 1276. Total energy = 10378.4806 kcal/mol (10358.2608 without restraints) Performing minimization step: 1277. Total energy = 10372.3854 kcal/mol (10352.1705 without restraints) Performing minimization step: 1278. Total energy = 10366.2980 kcal/mol (10346.0883 without restraints) Performing minimization step: 1279. Total energy = 10360.2184 kcal/mol (10340.0137 without restraints) Performing minimization step: 1280. Total energy = 10354.1469 kcal/mol (10333.9473 without restraints) Performing minimization step: 1281. Total energy = 10348.0831 kcal/mol (10327.8884 without restraints) Performing minimization step: 1282. Total energy = 10342.0277 kcal/mol (10321.8380 without restraints) Performing minimization step: 1283. Total energy = 10335.9797 kcal/mol (10315.7951 without restraints) Performing minimization step: 1284. Total energy = 10329.9395 kcal/mol (10309.7599 without restraints) Performing minimization step: 1285. Total energy = 10323.9072 kcal/mol (10303.7326 without restraints) Performing minimization step: 1286. Total energy = 10317.8827 kcal/mol (10297.7130 without restraints) Performing minimization step: 1287. Total energy = 10311.8659 kcal/mol (10291.7013 without restraints) Performing minimization step: 1288. Total energy = 10305.8569 kcal/mol (10285.6974 without restraints) Performing minimization step: 1289. Total energy = 10299.8559 kcal/mol (10279.7014 without restraints) Performing minimization step: 1290. Total energy = 10293.8627 kcal/mol (10273.7132 without restraints) Performing minimization step: 1291. Total energy = 10287.8770 kcal/mol (10267.7325 without restraints) Performing minimization step: 1292. Total energy = 10281.8989 kcal/mol (10261.7595 without restraints) Performing minimization step: 1293. Total energy = 10275.9288 kcal/mol (10255.7944 without restraints) Performing minimization step: 1294. Total energy = 10269.9660 kcal/mol (10249.8367 without restraints) Performing minimization step: 1295. Total energy = 10264.0112 kcal/mol (10243.8868 without restraints) Performing minimization step: 1296. Total energy = 10258.0639 kcal/mol (10237.9445 without restraints) Performing minimization step: 1297. Total energy = 10252.1240 kcal/mol (10232.0097 without restraints) Performing minimization step: 1298. Total energy = 10246.1921 kcal/mol (10226.0827 without restraints) Performing minimization step: 1299. Total energy = 10240.2678 kcal/mol (10220.1634 without restraints) Performing minimization step: 1300. Total energy = 10234.3514 kcal/mol (10214.2520 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 10228.4423 kcal/mol (10208.3480 without restraints) Performing minimization step: 1302. Total energy = 10222.5407 kcal/mol (10202.4514 without restraints) Performing minimization step: 1303. Total energy = 10216.6466 kcal/mol (10196.5624 without restraints) Performing minimization step: 1304. Total energy = 10210.7601 kcal/mol (10190.6809 without restraints) Performing minimization step: 1305. Total energy = 10204.8811 kcal/mol (10184.8069 without restraints) Performing minimization step: 1306. Total energy = 10199.0096 kcal/mol (10178.9404 without restraints) Performing minimization step: 1307. Total energy = 10193.1457 kcal/mol (10173.0815 without restraints) Performing minimization step: 1308. Total energy = 10187.2892 kcal/mol (10167.2301 without restraints) Performing minimization step: 1309. Total energy = 10181.4401 kcal/mol (10161.3860 without restraints) Performing minimization step: 1310. Total energy = 10175.5985 kcal/mol (10155.5494 without restraints) Performing minimization step: 1311. Total energy = 10169.7644 kcal/mol (10149.7203 without restraints) Performing minimization step: 1312. Total energy = 10163.9381 kcal/mol (10143.8991 without restraints) Performing minimization step: 1313. Total energy = 10158.1188 kcal/mol (10138.0848 without restraints) Performing minimization step: 1314. Total energy = 10152.3073 kcal/mol (10132.2782 without restraints) Performing minimization step: 1315. Total energy = 10146.5027 kcal/mol (10126.4788 without restraints) Performing minimization step: 1316. Total energy = 10140.7057 kcal/mol (10120.6868 without restraints) Performing minimization step: 1317. Total energy = 10134.9162 kcal/mol (10114.9023 without restraints) Performing minimization step: 1318. Total energy = 10129.1343 kcal/mol (10109.1254 without restraints) Performing minimization step: 1319. Total energy = 10123.3595 kcal/mol (10103.3557 without restraints) Performing minimization step: 1320. Total energy = 10117.5918 kcal/mol (10097.5930 without restraints) Performing minimization step: 1321. Total energy = 10111.8315 kcal/mol (10091.8377 without restraints) Performing minimization step: 1322. Total energy = 10106.0787 kcal/mol (10086.0902 without restraints) Performing minimization step: 1323. Total energy = 10100.3334 kcal/mol (10080.3496 without restraints) Performing minimization step: 1324. Total energy = 10094.5949 kcal/mol (10074.6162 without restraints) Performing minimization step: 1325. Total energy = 10088.8638 kcal/mol (10068.8901 without restraints) Performing minimization step: 1326. Total energy = 10083.1403 kcal/mol (10063.1717 without restraints) Performing minimization step: 1327. Total energy = 10077.4238 kcal/mol (10057.4601 without restraints) Performing minimization step: 1328. Total energy = 10071.7142 kcal/mol (10051.7556 without restraints) Performing minimization step: 1329. Total energy = 10066.0119 kcal/mol (10046.0583 without restraints) Performing minimization step: 1330. Total energy = 10060.3169 kcal/mol (10040.3683 without restraints) Performing minimization step: 1331. Total energy = 10054.6296 kcal/mol (10034.6861 without restraints) Performing minimization step: 1332. Total energy = 10048.9492 kcal/mol (10029.0108 without restraints) Performing minimization step: 1333. Total energy = 10043.2759 kcal/mol (10023.3424 without restraints) Performing minimization step: 1334. Total energy = 10037.6098 kcal/mol (10017.6813 without restraints) Performing minimization step: 1335. Total energy = 10031.9507 kcal/mol (10012.0272 without restraints) Performing minimization step: 1336. Total energy = 10026.2987 kcal/mol (10006.3803 without restraints) Performing minimization step: 1337. Total energy = 10020.6541 kcal/mol (10000.7407 without restraints) Performing minimization step: 1338. Total energy = 10015.0171 kcal/mol (9995.1088 without restraints) Performing minimization step: 1339. Total energy = 10009.3865 kcal/mol (9989.4832 without restraints) Performing minimization step: 1340. Total energy = 10003.7633 kcal/mol (9983.8650 without restraints) Performing minimization step: 1341. Total energy = 9998.1468 kcal/mol (9978.2536 without restraints) Performing minimization step: 1342. Total energy = 9992.5378 kcal/mol (9972.6496 without restraints) Performing minimization step: 1343. Total energy = 9986.9354 kcal/mol (9967.0523 without restraints) Performing minimization step: 1344. Total energy = 9981.3399 kcal/mol (9961.4617 without restraints) Performing minimization step: 1345. Total energy = 9975.7516 kcal/mol (9955.8785 without restraints) Performing minimization step: 1346. Total energy = 9970.1703 kcal/mol (9950.3022 without restraints) Performing minimization step: 1347. Total energy = 9964.5958 kcal/mol (9944.7326 without restraints) Performing minimization step: 1348. Total energy = 9959.0282 kcal/mol (9939.1702 without restraints) Performing minimization step: 1349. Total energy = 9953.4678 kcal/mol (9933.6148 without restraints) Performing minimization step: 1350. Total energy = 9947.9144 kcal/mol (9928.0665 without restraints) Performing minimization step: 1351. Total energy = 9942.3680 kcal/mol (9922.5251 without restraints) Performing minimization step: 1352. Total energy = 9936.8285 kcal/mol (9916.9906 without restraints) Performing minimization step: 1353. Total energy = 9931.2959 kcal/mol (9911.4631 without restraints) Performing minimization step: 1354. Total energy = 9925.7699 kcal/mol (9905.9420 without restraints) Performing minimization step: 1355. Total energy = 9920.2511 kcal/mol (9900.4282 without restraints) Performing minimization step: 1356. Total energy = 9914.7400 kcal/mol (9894.9223 without restraints) Performing minimization step: 1357. Total energy = 9909.2350 kcal/mol (9889.4222 without restraints) Performing minimization step: 1358. Total energy = 9903.7368 kcal/mol (9883.9291 without restraints) Performing minimization step: 1359. Total energy = 9898.2451 kcal/mol (9878.4424 without restraints) Performing minimization step: 1360. Total energy = 9892.7606 kcal/mol (9872.9630 without restraints) Performing minimization step: 1361. Total energy = 9887.2828 kcal/mol (9867.4902 without restraints) Performing minimization step: 1362. Total energy = 9881.8121 kcal/mol (9862.0245 without restraints) Performing minimization step: 1363. Total energy = 9876.3480 kcal/mol (9856.5654 without restraints) Performing minimization step: 1364. Total energy = 9870.8907 kcal/mol (9851.1133 without restraints) Performing minimization step: 1365. Total energy = 9865.4404 kcal/mol (9845.6679 without restraints) Performing minimization step: 1366. Total energy = 9859.9968 kcal/mol (9840.2295 without restraints) Performing minimization step: 1367. Total energy = 9854.5600 kcal/mol (9834.7976 without restraints) Performing minimization step: 1368. Total energy = 9849.1299 kcal/mol (9829.3725 without restraints) Performing minimization step: 1369. Total energy = 9843.7061 kcal/mol (9823.9536 without restraints) Performing minimization step: 1370. Total energy = 9838.2894 kcal/mol (9818.5422 without restraints) Performing minimization step: 1371. Total energy = 9832.8796 kcal/mol (9813.1373 without restraints) Performing minimization step: 1372. Total energy = 9827.4757 kcal/mol (9807.7381 without restraints) Performing minimization step: 1373. Total energy = 9822.0788 kcal/mol (9802.3466 without restraints) Performing minimization step: 1374. Total energy = 9816.6891 kcal/mol (9796.9619 without restraints) Performing minimization step: 1375. Total energy = 9811.3058 kcal/mol (9791.5837 without restraints) Performing minimization step: 1376. Total energy = 9805.9292 kcal/mol (9786.2122 without restraints) Performing minimization step: 1377. Total energy = 9800.5594 kcal/mol (9780.8473 without restraints) Performing minimization step: 1378. Total energy = 9795.1960 kcal/mol (9775.4891 without restraints) Performing minimization step: 1379. Total energy = 9789.8392 kcal/mol (9770.1373 without restraints) Performing minimization step: 1380. Total energy = 9784.4889 kcal/mol (9764.7920 without restraints) Performing minimization step: 1381. Total energy = 9779.1455 kcal/mol (9759.4536 without restraints) Performing minimization step: 1382. Total energy = 9773.8086 kcal/mol (9754.1218 without restraints) Performing minimization step: 1383. Total energy = 9768.4784 kcal/mol (9748.7966 without restraints) Performing minimization step: 1384. Total energy = 9763.1546 kcal/mol (9743.4779 without restraints) Performing minimization step: 1385. Total energy = 9757.8372 kcal/mol (9738.1653 without restraints) Performing minimization step: 1386. Total energy = 9752.5264 kcal/mol (9732.8597 without restraints) Performing minimization step: 1387. Total energy = 9747.2223 kcal/mol (9727.5607 without restraints) Performing minimization step: 1388. Total energy = 9741.9247 kcal/mol (9722.2681 without restraints) Performing minimization step: 1389. Total energy = 9736.6336 kcal/mol (9716.9821 without restraints) Performing minimization step: 1390. Total energy = 9731.3495 kcal/mol (9711.7029 without restraints) Performing minimization step: 1391. Total energy = 9726.0714 kcal/mol (9706.4299 without restraints) Performing minimization step: 1392. Total energy = 9720.7996 kcal/mol (9701.1632 without restraints) Performing minimization step: 1393. Total energy = 9715.5347 kcal/mol (9695.9035 without restraints) Performing minimization step: 1394. Total energy = 9710.2762 kcal/mol (9690.6498 without restraints) Performing minimization step: 1395. Total energy = 9705.0241 kcal/mol (9685.4028 without restraints) Performing minimization step: 1396. Total energy = 9699.7787 kcal/mol (9680.1625 without restraints) Performing minimization step: 1397. Total energy = 9694.5393 kcal/mol (9674.9281 without restraints) Performing minimization step: 1398. Total energy = 9689.3067 kcal/mol (9669.7007 without restraints) Performing minimization step: 1399. Total energy = 9684.0799 kcal/mol (9664.4788 without restraints) Performing minimization step: 1400. Total energy = 9678.8599 kcal/mol (9659.2639 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 9673.6462 kcal/mol (9654.0551 without restraints) Performing minimization step: 1402. Total energy = 9668.4393 kcal/mol (9648.8533 without restraints) Performing minimization step: 1403. Total energy = 9663.2385 kcal/mol (9643.6575 without restraints) Performing minimization step: 1404. Total energy = 9658.0438 kcal/mol (9638.4679 without restraints) Performing minimization step: 1405. Total energy = 9652.8555 kcal/mol (9633.2846 without restraints) Performing minimization step: 1406. Total energy = 9647.6736 kcal/mol (9628.1077 without restraints) Performing minimization step: 1407. Total energy = 9642.4981 kcal/mol (9622.9373 without restraints) Performing minimization step: 1408. Total energy = 9637.3289 kcal/mol (9617.7732 without restraints) Performing minimization step: 1409. Total energy = 9632.1659 kcal/mol (9612.6152 without restraints) Performing minimization step: 1410. Total energy = 9627.0092 kcal/mol (9607.4636 without restraints) Performing minimization step: 1411. Total energy = 9621.8588 kcal/mol (9602.3182 without restraints) Performing minimization step: 1412. Total energy = 9616.7145 kcal/mol (9597.1789 without restraints) Performing minimization step: 1413. Total energy = 9611.5762 kcal/mol (9592.0457 without restraints) Performing minimization step: 1414. Total energy = 9606.4448 kcal/mol (9586.9193 without restraints) Performing minimization step: 1415. Total energy = 9601.3192 kcal/mol (9581.7988 without restraints) Performing minimization step: 1416. Total energy = 9596.1999 kcal/mol (9576.6846 without restraints) Performing minimization step: 1417. Total energy = 9591.0866 kcal/mol (9571.5763 without restraints) Performing minimization step: 1418. Total energy = 9585.9802 kcal/mol (9566.4750 without restraints) Performing minimization step: 1419. Total energy = 9580.8799 kcal/mol (9561.3797 without restraints) Performing minimization step: 1420. Total energy = 9575.7851 kcal/mol (9556.2898 without restraints) Performing minimization step: 1421. Total energy = 9570.6967 kcal/mol (9551.2067 without restraints) Performing minimization step: 1422. Total energy = 9565.6143 kcal/mol (9546.1292 without restraints) Performing minimization step: 1423. Total energy = 9560.5385 kcal/mol (9541.0587 without restraints) Performing minimization step: 1424. Total energy = 9555.4689 kcal/mol (9535.9939 without restraints) Performing minimization step: 1425. Total energy = 9550.4048 kcal/mol (9530.9348 without restraints) Performing minimization step: 1426. Total energy = 9545.3471 kcal/mol (9525.8822 without restraints) Performing minimization step: 1427. Total energy = 9540.2956 kcal/mol (9520.8358 without restraints) Performing minimization step: 1428. Total energy = 9535.2507 kcal/mol (9515.7959 without restraints) Performing minimization step: 1429. Total energy = 9530.2120 kcal/mol (9510.7623 without restraints) Performing minimization step: 1430. Total energy = 9525.1787 kcal/mol (9505.7339 without restraints) Performing minimization step: 1431. Total energy = 9520.1514 kcal/mol (9500.7118 without restraints) Performing minimization step: 1432. Total energy = 9515.1302 kcal/mol (9495.6956 without restraints) Performing minimization step: 1433. Total energy = 9510.1150 kcal/mol (9490.6854 without restraints) Performing minimization step: 1434. Total energy = 9505.1060 kcal/mol (9485.6815 without restraints) Performing minimization step: 1435. Total energy = 9500.1030 kcal/mol (9480.6836 without restraints) Performing minimization step: 1436. Total energy = 9495.1058 kcal/mol (9475.6915 without restraints) Performing minimization step: 1437. Total energy = 9490.1149 kcal/mol (9470.7056 without restraints) Performing minimization step: 1438. Total energy = 9485.1304 kcal/mol (9465.7262 without restraints) Performing minimization step: 1439. Total energy = 9480.1518 kcal/mol (9460.7526 without restraints) Performing minimization step: 1440. Total energy = 9475.1785 kcal/mol (9455.7842 without restraints) Performing minimization step: 1441. Total energy = 9470.2115 kcal/mol (9450.8224 without restraints) Performing minimization step: 1442. Total energy = 9465.2508 kcal/mol (9445.8667 without restraints) Performing minimization step: 1443. Total energy = 9460.2961 kcal/mol (9440.9172 without restraints) Performing minimization step: 1444. Total energy = 9455.3475 kcal/mol (9435.9735 without restraints) Performing minimization step: 1445. Total energy = 9450.4045 kcal/mol (9431.0357 without restraints) Performing minimization step: 1446. Total energy = 9445.4676 kcal/mol (9426.1039 without restraints) Performing minimization step: 1447. Total energy = 9440.5361 kcal/mol (9421.1774 without restraints) Performing minimization step: 1448. Total energy = 9435.6106 kcal/mol (9416.2569 without restraints) Performing minimization step: 1449. Total energy = 9430.6911 kcal/mol (9411.3425 without restraints) Performing minimization step: 1450. Total energy = 9425.7772 kcal/mol (9406.4337 without restraints) Performing minimization step: 1451. Total energy = 9420.8695 kcal/mol (9401.5309 without restraints) Performing minimization step: 1452. Total energy = 9415.9675 kcal/mol (9396.6340 without restraints) Performing minimization step: 1453. Total energy = 9411.0717 kcal/mol (9391.7433 without restraints) Performing minimization step: 1454. Total energy = 9406.1814 kcal/mol (9386.8580 without restraints) Performing minimization step: 1455. Total energy = 9401.2972 kcal/mol (9381.9790 without restraints) Performing minimization step: 1456. Total energy = 9396.4187 kcal/mol (9377.1055 without restraints) Performing minimization step: 1457. Total energy = 9391.5461 kcal/mol (9372.2380 without restraints) Performing minimization step: 1458. Total energy = 9386.6795 kcal/mol (9367.3764 without restraints) Performing minimization step: 1459. Total energy = 9381.8187 kcal/mol (9362.5207 without restraints) Performing minimization step: 1460. Total energy = 9376.9633 kcal/mol (9357.6703 without restraints) Performing minimization step: 1461. Total energy = 9372.1138 kcal/mol (9352.8259 without restraints) Performing minimization step: 1462. Total energy = 9367.2700 kcal/mol (9347.9872 without restraints) Performing minimization step: 1463. Total energy = 9362.4318 kcal/mol (9343.1541 without restraints) Performing minimization step: 1464. Total energy = 9357.5998 kcal/mol (9338.3271 without restraints) Performing minimization step: 1465. Total energy = 9352.7732 kcal/mol (9333.5056 without restraints) Performing minimization step: 1466. Total energy = 9347.9527 kcal/mol (9328.6902 without restraints) Performing minimization step: 1467. Total energy = 9343.1377 kcal/mol (9323.8802 without restraints) Performing minimization step: 1468. Total energy = 9338.3281 kcal/mol (9319.0757 without restraints) Performing minimization step: 1469. Total energy = 9333.5244 kcal/mol (9314.2768 without restraints) Performing minimization step: 1470. Total energy = 9328.7268 kcal/mol (9309.4845 without restraints) Performing minimization step: 1471. Total energy = 9323.9344 kcal/mol (9304.6972 without restraints) Performing minimization step: 1472. Total energy = 9319.1478 kcal/mol (9299.9156 without restraints) Performing minimization step: 1473. Total energy = 9314.3672 kcal/mol (9295.1401 without restraints) Performing minimization step: 1474. Total energy = 9309.5922 kcal/mol (9290.3701 without restraints) Performing minimization step: 1475. Total energy = 9304.8222 kcal/mol (9285.6052 without restraints) Performing minimization step: 1476. Total energy = 9300.0585 kcal/mol (9280.8466 without restraints) Performing minimization step: 1477. Total energy = 9295.3003 kcal/mol (9276.0935 without restraints) Performing minimization step: 1478. Total energy = 9290.5476 kcal/mol (9271.3457 without restraints) Performing minimization step: 1479. Total energy = 9285.8008 kcal/mol (9266.6041 without restraints) Performing minimization step: 1480. Total energy = 9281.0593 kcal/mol (9261.8676 without restraints) Performing minimization step: 1481. Total energy = 9276.3236 kcal/mol (9257.1370 without restraints) Performing minimization step: 1482. Total energy = 9271.5935 kcal/mol (9252.4120 without restraints) Performing minimization step: 1483. Total energy = 9266.8691 kcal/mol (9247.6925 without restraints) Performing minimization step: 1484. Total energy = 9262.1500 kcal/mol (9242.9787 without restraints) Performing minimization step: 1485. Total energy = 9257.4370 kcal/mol (9238.2708 without restraints) Performing minimization step: 1486. Total energy = 9252.7290 kcal/mol (9233.5677 without restraints) Performing minimization step: 1487. Total energy = 9248.0266 kcal/mol (9228.8704 without restraints) Performing minimization step: 1488. Total energy = 9243.3301 kcal/mol (9224.1790 without restraints) Performing minimization step: 1489. Total energy = 9238.6391 kcal/mol (9219.4930 without restraints) Performing minimization step: 1490. Total energy = 9233.9535 kcal/mol (9214.8125 without restraints) Performing minimization step: 1491. Total energy = 9229.2730 kcal/mol (9210.1371 without restraints) Performing minimization step: 1492. Total energy = 9224.5982 kcal/mol (9205.4674 without restraints) Performing minimization step: 1493. Total energy = 9219.9290 kcal/mol (9200.8032 without restraints) Performing minimization step: 1494. Total energy = 9215.2648 kcal/mol (9196.1441 without restraints) Performing minimization step: 1495. Total energy = 9210.6063 kcal/mol (9191.4907 without restraints) Performing minimization step: 1496. Total energy = 9205.9537 kcal/mol (9186.8431 without restraints) Performing minimization step: 1497. Total energy = 9201.3063 kcal/mol (9182.2008 without restraints) Performing minimization step: 1498. Total energy = 9196.6641 kcal/mol (9177.5637 without restraints) Performing minimization step: 1499. Total energy = 9192.0274 kcal/mol (9172.9321 without restraints) Performing minimization step: 1500. Total energy = 9187.3964 kcal/mol (9168.3062 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 9182.7703 kcal/mol (9163.6851 without restraints) Performing minimization step: 1502. Total energy = 9178.1500 kcal/mol (9159.0699 without restraints) Performing minimization step: 1503. Total energy = 9173.5354 kcal/mol (9154.4605 without restraints) Performing minimization step: 1504. Total energy = 9168.9260 kcal/mol (9149.8560 without restraints) Performing minimization step: 1505. Total energy = 9164.3219 kcal/mol (9145.2571 without restraints) Performing minimization step: 1506. Total energy = 9159.7237 kcal/mol (9140.6639 without restraints) Performing minimization step: 1507. Total energy = 9155.1309 kcal/mol (9136.0763 without restraints) Performing minimization step: 1508. Total energy = 9150.5431 kcal/mol (9131.4935 without restraints) Performing minimization step: 1509. Total energy = 9145.9604 kcal/mol (9126.9159 without restraints) Performing minimization step: 1510. Total energy = 9141.3834 kcal/mol (9122.3439 without restraints) Performing minimization step: 1511. Total energy = 9136.8119 kcal/mol (9117.7775 without restraints) Performing minimization step: 1512. Total energy = 9132.2454 kcal/mol (9113.2161 without restraints) Performing minimization step: 1513. Total energy = 9127.6842 kcal/mol (9108.6600 without restraints) Performing minimization step: 1514. Total energy = 9123.1281 kcal/mol (9104.1090 without restraints) Performing minimization step: 1515. Total energy = 9118.5773 kcal/mol (9099.5632 without restraints) Performing minimization step: 1516. Total energy = 9114.0320 kcal/mol (9095.0230 without restraints) Performing minimization step: 1517. Total energy = 9109.4920 kcal/mol (9090.4881 without restraints) Performing minimization step: 1518. Total energy = 9104.9573 kcal/mol (9085.9585 without restraints) Performing minimization step: 1519. Total energy = 9100.4279 kcal/mol (9081.4341 without restraints) Performing minimization step: 1520. Total energy = 9095.9036 kcal/mol (9076.9148 without restraints) Performing minimization step: 1521. Total energy = 9091.3848 kcal/mol (9072.4012 without restraints) Performing minimization step: 1522. Total energy = 9086.8715 kcal/mol (9067.8932 without restraints) Performing minimization step: 1523. Total energy = 9082.3630 kcal/mol (9063.3896 without restraints) Performing minimization step: 1524. Total energy = 9077.8597 kcal/mol (9058.8914 without restraints) Performing minimization step: 1525. Total energy = 9073.3617 kcal/mol (9054.3984 without restraints) Performing minimization step: 1526. Total energy = 9068.8686 kcal/mol (9049.9104 without restraints) Performing minimization step: 1527. Total energy = 9064.3812 kcal/mol (9045.4281 without restraints) Performing minimization step: 1528. Total energy = 9059.8988 kcal/mol (9040.9508 without restraints) Performing minimization step: 1529. Total energy = 9055.4212 kcal/mol (9036.4782 without restraints) Performing minimization step: 1530. Total energy = 9050.9490 kcal/mol (9032.0112 without restraints) Performing minimization step: 1531. Total energy = 9046.4817 kcal/mol (9027.5489 without restraints) Performing minimization step: 1532. Total energy = 9042.0199 kcal/mol (9023.0922 without restraints) Performing minimization step: 1533. Total energy = 9037.5632 kcal/mol (9018.6406 without restraints) Performing minimization step: 1534. Total energy = 9033.1121 kcal/mol (9014.1946 without restraints) Performing minimization step: 1535. Total energy = 9028.6662 kcal/mol (9009.7538 without restraints) Performing minimization step: 1536. Total energy = 9024.2247 kcal/mol (9005.3173 without restraints) Performing minimization step: 1537. Total energy = 9019.7886 kcal/mol (9000.8863 without restraints) Performing minimization step: 1538. Total energy = 9015.3576 kcal/mol (8996.4605 without restraints) Performing minimization step: 1539. Total energy = 9010.9320 kcal/mol (8992.0400 without restraints) Performing minimization step: 1540. Total energy = 9006.5114 kcal/mol (8987.6245 without restraints) Performing minimization step: 1541. Total energy = 9002.0962 kcal/mol (8983.2143 without restraints) Performing minimization step: 1542. Total energy = 8997.6857 kcal/mol (8978.8088 without restraints) Performing minimization step: 1543. Total energy = 8993.2801 kcal/mol (8974.4084 without restraints) Performing minimization step: 1544. Total energy = 8988.8797 kcal/mol (8970.0131 without restraints) Performing minimization step: 1545. Total energy = 8984.4844 kcal/mol (8965.6229 without restraints) Performing minimization step: 1546. Total energy = 8980.0938 kcal/mol (8961.2374 without restraints) Performing minimization step: 1547. Total energy = 8975.7087 kcal/mol (8956.8573 without restraints) Performing minimization step: 1548. Total energy = 8971.3282 kcal/mol (8952.4817 without restraints) Performing minimization step: 1549. Total energy = 8966.9525 kcal/mol (8948.1114 without restraints) Performing minimization step: 1550. Total energy = 8962.5823 kcal/mol (8943.7462 without restraints) Performing minimization step: 1551. Total energy = 8958.2172 kcal/mol (8939.3862 without restraints) Performing minimization step: 1552. Total energy = 8953.8570 kcal/mol (8935.0311 without restraints) Performing minimization step: 1553. Total energy = 8949.5017 kcal/mol (8930.6809 without restraints) Performing minimization step: 1554. Total energy = 8945.1516 kcal/mol (8926.3359 without restraints) Performing minimization step: 1555. Total energy = 8940.8063 kcal/mol (8921.9957 without restraints) Performing minimization step: 1556. Total energy = 8936.4663 kcal/mol (8917.6607 without restraints) Performing minimization step: 1557. Total energy = 8932.1309 kcal/mol (8913.3305 without restraints) Performing minimization step: 1558. Total energy = 8927.8004 kcal/mol (8909.0050 without restraints) Performing minimization step: 1559. Total energy = 8923.4749 kcal/mol (8904.6846 without restraints) Performing minimization step: 1560. Total energy = 8919.1550 kcal/mol (8900.3699 without restraints) Performing minimization step: 1561. Total energy = 8914.8394 kcal/mol (8896.0593 without restraints) Performing minimization step: 1562. Total energy = 8910.5288 kcal/mol (8891.7538 without restraints) Performing minimization step: 1563. Total energy = 8906.2226 kcal/mol (8887.4527 without restraints) Performing minimization step: 1564. Total energy = 8901.9219 kcal/mol (8883.1572 without restraints) Performing minimization step: 1565. Total energy = 8897.6259 kcal/mol (8878.8661 without restraints) Performing minimization step: 1566. Total energy = 8893.3347 kcal/mol (8874.5801 without restraints) Performing minimization step: 1567. Total energy = 8889.0486 kcal/mol (8870.2990 without restraints) Performing minimization step: 1568. Total energy = 8884.7671 kcal/mol (8866.0227 without restraints) Performing minimization step: 1569. Total energy = 8880.4909 kcal/mol (8861.7515 without restraints) Performing minimization step: 1570. Total energy = 8876.2192 kcal/mol (8857.4850 without restraints) Performing minimization step: 1571. Total energy = 8871.9529 kcal/mol (8853.2237 without restraints) Performing minimization step: 1572. Total energy = 8867.6908 kcal/mol (8848.9668 without restraints) Performing minimization step: 1573. Total energy = 8863.4337 kcal/mol (8844.7148 without restraints) Performing minimization step: 1574. Total energy = 8859.1815 kcal/mol (8840.4676 without restraints) Performing minimization step: 1575. Total energy = 8854.9340 kcal/mol (8836.2252 without restraints) Performing minimization step: 1576. Total energy = 8850.6911 kcal/mol (8831.9875 without restraints) Performing minimization step: 1577. Total energy = 8846.4534 kcal/mol (8827.7549 without restraints) Performing minimization step: 1578. Total energy = 8842.2203 kcal/mol (8823.5269 without restraints) Performing minimization step: 1579. Total energy = 8837.9920 kcal/mol (8819.3037 without restraints) Performing minimization step: 1580. Total energy = 8833.7685 kcal/mol (8815.0853 without restraints) Performing minimization step: 1581. Total energy = 8829.5500 kcal/mol (8810.8719 without restraints) Performing minimization step: 1582. Total energy = 8825.3362 kcal/mol (8806.6632 without restraints) Performing minimization step: 1583. Total energy = 8821.1269 kcal/mol (8802.4589 without restraints) Performing minimization step: 1584. Total energy = 8816.9223 kcal/mol (8798.2595 without restraints) Performing minimization step: 1585. Total energy = 8812.7228 kcal/mol (8794.0650 without restraints) Performing minimization step: 1586. Total energy = 8808.5277 kcal/mol (8789.8750 without restraints) Performing minimization step: 1587. Total energy = 8804.3374 kcal/mol (8785.6898 without restraints) Performing minimization step: 1588. Total energy = 8800.1516 kcal/mol (8781.5091 without restraints) Performing minimization step: 1589. Total energy = 8795.9706 kcal/mol (8777.3333 without restraints) Performing minimization step: 1590. Total energy = 8791.7945 kcal/mol (8773.1623 without restraints) Performing minimization step: 1591. Total energy = 8787.6232 kcal/mol (8768.9962 without restraints) Performing minimization step: 1592. Total energy = 8783.4561 kcal/mol (8764.8341 without restraints) Performing minimization step: 1593. Total energy = 8779.2944 kcal/mol (8760.6775 without restraints) Performing minimization step: 1594. Total energy = 8775.1369 kcal/mol (8756.5251 without restraints) Performing minimization step: 1595. Total energy = 8770.9846 kcal/mol (8752.3778 without restraints) Performing minimization step: 1596. Total energy = 8766.8365 kcal/mol (8748.2350 without restraints) Performing minimization step: 1597. Total energy = 8762.6940 kcal/mol (8744.0975 without restraints) Performing minimization step: 1598. Total energy = 8758.5551 kcal/mol (8739.9637 without restraints) Performing minimization step: 1599. Total energy = 8754.4209 kcal/mol (8735.8346 without restraints) Performing minimization step: 1600. Total energy = 8750.2912 kcal/mol (8731.7100 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 8746.1662 kcal/mol (8727.5900 without restraints) Performing minimization step: 1602. Total energy = 8742.0456 kcal/mol (8723.4745 without restraints) Performing minimization step: 1603. Total energy = 8737.9298 kcal/mol (8719.3639 without restraints) Performing minimization step: 1604. Total energy = 8733.8183 kcal/mol (8715.2576 without restraints) Performing minimization step: 1605. Total energy = 8729.7117 kcal/mol (8711.1560 without restraints) Performing minimization step: 1606. Total energy = 8725.6096 kcal/mol (8707.0590 without restraints) Performing minimization step: 1607. Total energy = 8721.5120 kcal/mol (8702.9666 without restraints) Performing minimization step: 1608. Total energy = 8717.4190 kcal/mol (8698.8785 without restraints) Performing minimization step: 1609. Total energy = 8713.3305 kcal/mol (8694.7952 without restraints) Performing minimization step: 1610. Total energy = 8709.2466 kcal/mol (8690.7165 without restraints) Performing minimization step: 1611. Total energy = 8705.1672 kcal/mol (8686.6422 without restraints) Performing minimization step: 1612. Total energy = 8701.0926 kcal/mol (8682.5726 without restraints) Performing minimization step: 1613. Total energy = 8697.0226 kcal/mol (8678.5077 without restraints) Performing minimization step: 1614. Total energy = 8692.9568 kcal/mol (8674.4471 without restraints) Performing minimization step: 1615. Total energy = 8688.8955 kcal/mol (8670.3909 without restraints) Performing minimization step: 1616. Total energy = 8684.8389 kcal/mol (8666.3396 without restraints) Performing minimization step: 1617. Total energy = 8680.7873 kcal/mol (8662.2928 without restraints) Performing minimization step: 1618. Total energy = 8676.7396 kcal/mol (8658.2503 without restraints) Performing minimization step: 1619. Total energy = 8672.6964 kcal/mol (8654.2123 without restraints) Performing minimization step: 1620. Total energy = 8668.6576 kcal/mol (8650.1785 without restraints) Performing minimization step: 1621. Total energy = 8664.6238 kcal/mol (8646.1498 without restraints) Performing minimization step: 1622. Total energy = 8660.5940 kcal/mol (8642.1252 without restraints) Performing minimization step: 1623. Total energy = 8656.5685 kcal/mol (8638.1047 without restraints) Performing minimization step: 1624. Total energy = 8652.5474 kcal/mol (8634.0887 without restraints) Performing minimization step: 1625. Total energy = 8648.5307 kcal/mol (8630.0772 without restraints) Performing minimization step: 1626. Total energy = 8644.5185 kcal/mol (8626.0701 without restraints) Performing minimization step: 1627. Total energy = 8640.5106 kcal/mol (8622.0675 without restraints) Performing minimization step: 1628. Total energy = 8636.5074 kcal/mol (8618.0692 without restraints) Performing minimization step: 1629. Total energy = 8632.5083 kcal/mol (8614.0752 without restraints) Performing minimization step: 1630. Total energy = 8628.5140 kcal/mol (8610.0860 without restraints) Performing minimization step: 1631. Total energy = 8624.5237 kcal/mol (8606.1008 without restraints) Performing minimization step: 1632. Total energy = 8620.5376 kcal/mol (8602.1198 without restraints) Performing minimization step: 1633. Total energy = 8616.5558 kcal/mol (8598.1431 without restraints) Performing minimization step: 1634. Total energy = 8612.5782 kcal/mol (8594.1707 without restraints) Performing minimization step: 1635. Total energy = 8608.6054 kcal/mol (8590.2029 without restraints) Performing minimization step: 1636. Total energy = 8604.6369 kcal/mol (8586.2395 without restraints) Performing minimization step: 1637. Total energy = 8600.6727 kcal/mol (8582.2805 without restraints) Performing minimization step: 1638. Total energy = 8596.7128 kcal/mol (8578.3257 without restraints) Performing minimization step: 1639. Total energy = 8592.7573 kcal/mol (8574.3753 without restraints) Performing minimization step: 1640. Total energy = 8588.8063 kcal/mol (8570.4294 without restraints) Performing minimization step: 1641. Total energy = 8584.8591 kcal/mol (8566.4873 without restraints) Performing minimization step: 1642. Total energy = 8580.9165 kcal/mol (8562.5498 without restraints) Performing minimization step: 1643. Total energy = 8576.9783 kcal/mol (8558.6168 without restraints) Performing minimization step: 1644. Total energy = 8573.0443 kcal/mol (8554.6878 without restraints) Performing minimization step: 1645. Total energy = 8569.1145 kcal/mol (8550.7631 without restraints) Performing minimization step: 1646. Total energy = 8565.1885 kcal/mol (8546.8422 without restraints) Performing minimization step: 1647. Total energy = 8561.2672 kcal/mol (8542.9260 without restraints) Performing minimization step: 1648. Total energy = 8557.3502 kcal/mol (8539.0142 without restraints) Performing minimization step: 1649. Total energy = 8553.4375 kcal/mol (8535.1066 without restraints) Performing minimization step: 1650. Total energy = 8549.5287 kcal/mol (8531.2029 without restraints) Performing minimization step: 1651. Total energy = 8545.6242 kcal/mol (8527.3035 without restraints) Performing minimization step: 1652. Total energy = 8541.7245 kcal/mol (8523.4089 without restraints) Performing minimization step: 1653. Total energy = 8537.8288 kcal/mol (8519.5184 without restraints) Performing minimization step: 1654. Total energy = 8533.9371 kcal/mol (8515.6318 without restraints) Performing minimization step: 1655. Total energy = 8530.0491 kcal/mol (8511.7486 without restraints) Performing minimization step: 1656. Total energy = 8526.1656 kcal/mol (8507.8704 without restraints) Performing minimization step: 1657. Total energy = 8522.2863 kcal/mol (8503.9962 without restraints) Performing minimization step: 1658. Total energy = 8518.4113 kcal/mol (8500.1263 without restraints) Performing minimization step: 1659. Total energy = 8514.5407 kcal/mol (8496.2609 without restraints) Performing minimization step: 1660. Total energy = 8510.6742 kcal/mol (8492.3996 without restraints) Performing minimization step: 1661. Total energy = 8506.8118 kcal/mol (8488.5422 without restraints) Performing minimization step: 1662. Total energy = 8502.9535 kcal/mol (8484.6890 without restraints) Performing minimization step: 1663. Total energy = 8499.0993 kcal/mol (8480.8399 without restraints) Performing minimization step: 1664. Total energy = 8495.2487 kcal/mol (8476.9945 without restraints) Performing minimization step: 1665. Total energy = 8491.4026 kcal/mol (8473.1534 without restraints) Performing minimization step: 1666. Total energy = 8487.5608 kcal/mol (8469.3168 without restraints) Performing minimization step: 1667. Total energy = 8483.7231 kcal/mol (8465.4842 without restraints) Performing minimization step: 1668. Total energy = 8479.8894 kcal/mol (8461.6556 without restraints) Performing minimization step: 1669. Total energy = 8476.0597 kcal/mol (8457.8309 without restraints) Performing minimization step: 1670. Total energy = 8472.2339 kcal/mol (8454.0103 without restraints) Performing minimization step: 1671. Total energy = 8468.4127 kcal/mol (8450.1942 without restraints) Performing minimization step: 1672. Total energy = 8464.5956 kcal/mol (8446.3824 without restraints) Performing minimization step: 1673. Total energy = 8460.7825 kcal/mol (8442.5742 without restraints) Performing minimization step: 1674. Total energy = 8456.9732 kcal/mol (8438.7701 without restraints) Performing minimization step: 1675. Total energy = 8453.1679 kcal/mol (8434.9697 without restraints) Performing minimization step: 1676. Total energy = 8449.3668 kcal/mol (8431.1738 without restraints) Performing minimization step: 1677. Total energy = 8445.5696 kcal/mol (8427.3818 without restraints) Performing minimization step: 1678. Total energy = 8441.7766 kcal/mol (8423.5940 without restraints) Performing minimization step: 1679. Total energy = 8437.9876 kcal/mol (8419.8100 without restraints) Performing minimization step: 1680. Total energy = 8434.2025 kcal/mol (8416.0301 without restraints) Performing minimization step: 1681. Total energy = 8430.4215 kcal/mol (8412.2541 without restraints) Performing minimization step: 1682. Total energy = 8426.6439 kcal/mol (8408.4816 without restraints) Performing minimization step: 1683. Total energy = 8422.8708 kcal/mol (8404.7138 without restraints) Performing minimization step: 1684. Total energy = 8419.1018 kcal/mol (8400.9497 without restraints) Performing minimization step: 1685. Total energy = 8415.3360 kcal/mol (8397.1890 without restraints) Performing minimization step: 1686. Total energy = 8411.5747 kcal/mol (8393.4329 without restraints) Performing minimization step: 1687. Total energy = 8407.8173 kcal/mol (8389.6804 without restraints) Performing minimization step: 1688. Total energy = 8404.0638 kcal/mol (8385.9322 without restraints) Performing minimization step: 1689. Total energy = 8400.3144 kcal/mol (8382.1879 without restraints) Performing minimization step: 1690. Total energy = 8396.5689 kcal/mol (8378.4476 without restraints) Performing minimization step: 1691. Total energy = 8392.8275 kcal/mol (8374.7113 without restraints) Performing minimization step: 1692. Total energy = 8389.0897 kcal/mol (8370.9785 without restraints) Performing minimization step: 1693. Total energy = 8385.3554 kcal/mol (8367.2494 without restraints) Performing minimization step: 1694. Total energy = 8381.6255 kcal/mol (8363.5244 without restraints) Performing minimization step: 1695. Total energy = 8377.8992 kcal/mol (8359.8034 without restraints) Performing minimization step: 1696. Total energy = 8374.1768 kcal/mol (8356.0861 without restraints) Performing minimization step: 1697. Total energy = 8370.4582 kcal/mol (8352.3727 without restraints) Performing minimization step: 1698. Total energy = 8366.7440 kcal/mol (8348.6634 without restraints) Performing minimization step: 1699. Total energy = 8363.0333 kcal/mol (8344.9579 without restraints) Performing minimization step: 1700. Total energy = 8359.3270 kcal/mol (8341.2567 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 8355.6242 kcal/mol (8337.5590 without restraints) Performing minimization step: 1702. Total energy = 8351.9251 kcal/mol (8333.8651 without restraints) Performing minimization step: 1703. Total energy = 8348.2297 kcal/mol (8330.1747 without restraints) Performing minimization step: 1704. Total energy = 8344.5385 kcal/mol (8326.4885 without restraints) Performing minimization step: 1705. Total energy = 8340.8512 kcal/mol (8322.8064 without restraints) Performing minimization step: 1706. Total energy = 8337.1676 kcal/mol (8319.1279 without restraints) Performing minimization step: 1707. Total energy = 8333.4876 kcal/mol (8315.4530 without restraints) Performing minimization step: 1708. Total energy = 8329.8111 kcal/mol (8311.7815 without restraints) Performing minimization step: 1709. Total energy = 8326.1388 kcal/mol (8308.1145 without restraints) Performing minimization step: 1710. Total energy = 8322.4705 kcal/mol (8304.4513 without restraints) Performing minimization step: 1711. Total energy = 8318.8054 kcal/mol (8300.7913 without restraints) Performing minimization step: 1712. Total energy = 8315.1444 kcal/mol (8297.1354 without restraints) Performing minimization step: 1713. Total energy = 8311.4870 kcal/mol (8293.4831 without restraints) Performing minimization step: 1714. Total energy = 8307.8334 kcal/mol (8289.8346 without restraints) Performing minimization step: 1715. Total energy = 8304.1833 kcal/mol (8286.1896 without restraints) Performing minimization step: 1716. Total energy = 8300.5371 kcal/mol (8282.5485 without restraints) Performing minimization step: 1717. Total energy = 8296.8951 kcal/mol (8278.9116 without restraints) Performing minimization step: 1718. Total energy = 8293.2562 kcal/mol (8275.2779 without restraints) Performing minimization step: 1719. Total energy = 8289.6213 kcal/mol (8271.6480 without restraints) Performing minimization step: 1720. Total energy = 8285.9900 kcal/mol (8268.0218 without restraints) Performing minimization step: 1721. Total energy = 8282.3624 kcal/mol (8264.3993 without restraints) Performing minimization step: 1722. Total energy = 8278.7384 kcal/mol (8260.7804 without restraints) Performing minimization step: 1723. Total energy = 8275.1181 kcal/mol (8257.1652 without restraints) Performing minimization step: 1724. Total energy = 8271.5015 kcal/mol (8253.5537 without restraints) Performing minimization step: 1725. Total energy = 8267.8889 kcal/mol (8249.9463 without restraints) Performing minimization step: 1726. Total energy = 8264.2798 kcal/mol (8246.3421 without restraints) Performing minimization step: 1727. Total energy = 8260.6742 kcal/mol (8242.7417 without restraints) Performing minimization step: 1728. Total energy = 8257.0719 kcal/mol (8239.1445 without restraints) Performing minimization step: 1729. Total energy = 8253.4731 kcal/mol (8235.5507 without restraints) Performing minimization step: 1730. Total energy = 8249.8781 kcal/mol (8231.9610 without restraints) Performing minimization step: 1731. Total energy = 8246.2871 kcal/mol (8228.3751 without restraints) Performing minimization step: 1732. Total energy = 8242.6996 kcal/mol (8224.7928 without restraints) Performing minimization step: 1733. Total energy = 8239.1157 kcal/mol (8221.2138 without restraints) Performing minimization step: 1734. Total energy = 8235.5353 kcal/mol (8217.6385 without restraints) Performing minimization step: 1735. Total energy = 8231.9586 kcal/mol (8214.0669 without restraints) Performing minimization step: 1736. Total energy = 8228.3853 kcal/mol (8210.4987 without restraints) Performing minimization step: 1737. Total energy = 8224.8161 kcal/mol (8206.9347 without restraints) Performing minimization step: 1738. Total energy = 8221.2498 kcal/mol (8203.3734 without restraints) Performing minimization step: 1739. Total energy = 8217.6871 kcal/mol (8199.8158 without restraints) Performing minimization step: 1740. Total energy = 8214.1281 kcal/mol (8196.2619 without restraints) Performing minimization step: 1741. Total energy = 8210.5725 kcal/mol (8192.7114 without restraints) Performing minimization step: 1742. Total energy = 8207.0205 kcal/mol (8189.1645 without restraints) Performing minimization step: 1743. Total energy = 8203.4720 kcal/mol (8185.6211 without restraints) Performing minimization step: 1744. Total energy = 8199.9271 kcal/mol (8182.0812 without restraints) Performing minimization step: 1745. Total energy = 8196.3856 kcal/mol (8178.5449 without restraints) Performing minimization step: 1746. Total energy = 8192.8475 kcal/mol (8175.0118 without restraints) Performing minimization step: 1747. Total energy = 8189.3129 kcal/mol (8171.4823 without restraints) Performing minimization step: 1748. Total energy = 8185.7820 kcal/mol (8167.9565 without restraints) Performing minimization step: 1749. Total energy = 8182.2545 kcal/mol (8164.4342 without restraints) Performing minimization step: 1750. Total energy = 8178.7304 kcal/mol (8160.9152 without restraints) Performing minimization step: 1751. Total energy = 8175.2098 kcal/mol (8157.3996 without restraints) Performing minimization step: 1752. Total energy = 8171.6927 kcal/mol (8153.8876 without restraints) Performing minimization step: 1753. Total energy = 8168.1787 kcal/mol (8150.3787 without restraints) Performing minimization step: 1754. Total energy = 8164.6683 kcal/mol (8146.8734 without restraints) Performing minimization step: 1755. Total energy = 8161.1616 kcal/mol (8143.3718 without restraints) Performing minimization step: 1756. Total energy = 8157.6581 kcal/mol (8139.8734 without restraints) Performing minimization step: 1757. Total energy = 8154.1580 kcal/mol (8136.3784 without restraints) Performing minimization step: 1758. Total energy = 8150.6613 kcal/mol (8132.8868 without restraints) Performing minimization step: 1759. Total energy = 8147.1680 kcal/mol (8129.3985 without restraints) Performing minimization step: 1760. Total energy = 8143.6781 kcal/mol (8125.9138 without restraints) Performing minimization step: 1761. Total energy = 8140.1924 kcal/mol (8122.4331 without restraints) Performing minimization step: 1762. Total energy = 8136.7092 kcal/mol (8118.9550 without restraints) Performing minimization step: 1763. Total energy = 8133.2292 kcal/mol (8115.4801 without restraints) Performing minimization step: 1764. Total energy = 8129.7527 kcal/mol (8112.0087 without restraints) Performing minimization step: 1765. Total energy = 8126.2798 kcal/mol (8108.5409 without restraints) Performing minimization step: 1766. Total energy = 8122.8101 kcal/mol (8105.0762 without restraints) Performing minimization step: 1767. Total energy = 8119.3436 kcal/mol (8101.6149 without restraints) Performing minimization step: 1768. Total energy = 8115.8801 kcal/mol (8098.1564 without restraints) Performing minimization step: 1769. Total energy = 8112.4205 kcal/mol (8094.7019 without restraints) Performing minimization step: 1770. Total energy = 8108.9640 kcal/mol (8091.2505 without restraints) Performing minimization step: 1771. Total energy = 8105.5109 kcal/mol (8087.8026 without restraints) Performing minimization step: 1772. Total energy = 8102.0611 kcal/mol (8084.3578 without restraints) Performing minimization step: 1773. Total energy = 8098.6143 kcal/mol (8080.9160 without restraints) Performing minimization step: 1774. Total energy = 8095.1711 kcal/mol (8077.4779 without restraints) Performing minimization step: 1775. Total energy = 8091.7310 kcal/mol (8074.0429 without restraints) Performing minimization step: 1776. Total energy = 8088.2941 kcal/mol (8070.6111 without restraints) Performing minimization step: 1777. Total energy = 8084.8605 kcal/mol (8067.1826 without restraints) Performing minimization step: 1778. Total energy = 8081.4301 kcal/mol (8063.7572 without restraints) Performing minimization step: 1779. Total energy = 8078.0031 kcal/mol (8060.3353 without restraints) Performing minimization step: 1780. Total energy = 8074.5793 kcal/mol (8056.9166 without restraints) Performing minimization step: 1781. Total energy = 8071.1587 kcal/mol (8053.5010 without restraints) Performing minimization step: 1782. Total energy = 8067.7412 kcal/mol (8050.0886 without restraints) Performing minimization step: 1783. Total energy = 8064.3271 kcal/mol (8046.6796 without restraints) Performing minimization step: 1784. Total energy = 8060.9159 kcal/mol (8043.2734 without restraints) Performing minimization step: 1785. Total energy = 8057.5080 kcal/mol (8039.8707 without restraints) Performing minimization step: 1786. Total energy = 8054.1035 kcal/mol (8036.4715 without restraints) Performing minimization step: 1787. Total energy = 8050.7025 kcal/mol (8033.0753 without restraints) Performing minimization step: 1788. Total energy = 8047.3043 kcal/mol (8029.6821 without restraints) Performing minimization step: 1789. Total energy = 8043.9091 kcal/mol (8026.2921 without restraints) Performing minimization step: 1790. Total energy = 8040.5170 kcal/mol (8022.9049 without restraints) Performing minimization step: 1791. Total energy = 8037.1281 kcal/mol (8019.5211 without restraints) Performing minimization step: 1792. Total energy = 8033.7424 kcal/mol (8016.1405 without restraints) Performing minimization step: 1793. Total energy = 8030.3599 kcal/mol (8012.7630 without restraints) Performing minimization step: 1794. Total energy = 8026.9803 kcal/mol (8009.3885 without restraints) Performing minimization step: 1795. Total energy = 8023.6042 kcal/mol (8006.0175 without restraints) Performing minimization step: 1796. Total energy = 8020.2310 kcal/mol (8002.6494 without restraints) Performing minimization step: 1797. Total energy = 8016.8604 kcal/mol (7999.2839 without restraints) Performing minimization step: 1798. Total energy = 8013.4932 kcal/mol (7995.9217 without restraints) Performing minimization step: 1799. Total energy = 8010.1290 kcal/mol (7992.5626 without restraints) Performing minimization step: 1800. Total energy = 8006.7683 kcal/mol (7989.2069 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 8003.4105 kcal/mol (7985.8542 without restraints) Performing minimization step: 1802. Total energy = 8000.0556 kcal/mol (7982.5044 without restraints) Performing minimization step: 1803. Total energy = 7996.7040 kcal/mol (7979.1578 without restraints) Performing minimization step: 1804. Total energy = 7993.3551 kcal/mol (7975.8140 without restraints) Performing minimization step: 1805. Total energy = 7990.0094 kcal/mol (7972.4732 without restraints) Performing minimization step: 1806. Total energy = 7986.6667 kcal/mol (7969.1356 without restraints) Performing minimization step: 1807. Total energy = 7983.3271 kcal/mol (7965.8012 without restraints) Performing minimization step: 1808. Total energy = 7979.9909 kcal/mol (7962.4702 without restraints) Performing minimization step: 1809. Total energy = 7976.6576 kcal/mol (7959.1418 without restraints) Performing minimization step: 1810. Total energy = 7973.3272 kcal/mol (7955.8163 without restraints) Performing minimization step: 1811. Total energy = 7969.9994 kcal/mol (7952.4936 without restraints) Performing minimization step: 1812. Total energy = 7966.6751 kcal/mol (7949.1746 without restraints) Performing minimization step: 1813. Total energy = 7963.3542 kcal/mol (7945.8585 without restraints) Performing minimization step: 1814. Total energy = 7960.0356 kcal/mol (7942.5450 without restraints) Performing minimization step: 1815. Total energy = 7956.7203 kcal/mol (7939.2347 without restraints) Performing minimization step: 1816. Total energy = 7953.4073 kcal/mol (7935.9267 without restraints) Performing minimization step: 1817. Total energy = 7950.0977 kcal/mol (7932.6224 without restraints) Performing minimization step: 1818. Total energy = 7946.7906 kcal/mol (7929.3202 without restraints) Performing minimization step: 1819. Total energy = 7943.4868 kcal/mol (7926.0214 without restraints) Performing minimization step: 1820. Total energy = 7940.1859 kcal/mol (7922.7256 without restraints) Performing minimization step: 1821. Total energy = 7936.8875 kcal/mol (7919.4322 without restraints) Performing minimization step: 1822. Total energy = 7933.5924 kcal/mol (7916.1422 without restraints) Performing minimization step: 1823. Total energy = 7930.3004 kcal/mol (7912.8552 without restraints) Performing minimization step: 1824. Total energy = 7927.0113 kcal/mol (7909.5712 without restraints) Performing minimization step: 1825. Total energy = 7923.7250 kcal/mol (7906.2898 without restraints) Performing minimization step: 1826. Total energy = 7920.4413 kcal/mol (7903.0111 without restraints) Performing minimization step: 1827. Total energy = 7917.1606 kcal/mol (7899.7357 without restraints) Performing minimization step: 1828. Total energy = 7913.8829 kcal/mol (7896.4629 without restraints) Performing minimization step: 1829. Total energy = 7910.6079 kcal/mol (7893.1930 without restraints) Performing minimization step: 1830. Total energy = 7907.3360 kcal/mol (7889.9260 without restraints) Performing minimization step: 1831. Total energy = 7904.0668 kcal/mol (7886.6619 without restraints) Performing minimization step: 1832. Total energy = 7900.8005 kcal/mol (7883.4006 without restraints) Performing minimization step: 1833. Total energy = 7897.5368 kcal/mol (7880.1420 without restraints) Performing minimization step: 1834. Total energy = 7894.2764 kcal/mol (7876.8867 without restraints) Performing minimization step: 1835. Total energy = 7891.0185 kcal/mol (7873.6337 without restraints) Performing minimization step: 1836. Total energy = 7887.7634 kcal/mol (7870.3836 without restraints) Performing minimization step: 1837. Total energy = 7884.5106 kcal/mol (7867.1358 without restraints) Performing minimization step: 1838. Total energy = 7881.2606 kcal/mol (7863.8909 without restraints) Performing minimization step: 1839. Total energy = 7878.0139 kcal/mol (7860.6493 without restraints) Performing minimization step: 1840. Total energy = 7874.7700 kcal/mol (7857.4103 without restraints) Performing minimization step: 1841. Total energy = 7871.5280 kcal/mol (7854.1734 without restraints) Performing minimization step: 1842. Total energy = 7868.2896 kcal/mol (7850.9399 without restraints) Performing minimization step: 1843. Total energy = 7865.0540 kcal/mol (7847.7095 without restraints) Performing minimization step: 1844. Total energy = 7861.8210 kcal/mol (7844.4815 without restraints) Performing minimization step: 1845. Total energy = 7858.5912 kcal/mol (7841.2568 without restraints) Performing minimization step: 1846. Total energy = 7855.3639 kcal/mol (7838.0345 without restraints) Performing minimization step: 1847. Total energy = 7852.1402 kcal/mol (7834.8157 without restraints) Performing minimization step: 1848. Total energy = 7848.9186 kcal/mol (7831.5991 without restraints) Performing minimization step: 1849. Total energy = 7845.6994 kcal/mol (7828.3849 without restraints) Performing minimization step: 1850. Total energy = 7842.4824 kcal/mol (7825.1729 without restraints) Performing minimization step: 1851. Total energy = 7839.2684 kcal/mol (7821.9638 without restraints) Performing minimization step: 1852. Total energy = 7836.0570 kcal/mol (7818.7575 without restraints) Performing minimization step: 1853. Total energy = 7832.8485 kcal/mol (7815.5541 without restraints) Performing minimization step: 1854. Total energy = 7829.6422 kcal/mol (7812.3527 without restraints) Performing minimization step: 1855. Total energy = 7826.4391 kcal/mol (7809.1547 without restraints) Performing minimization step: 1856. Total energy = 7823.2386 kcal/mol (7805.9591 without restraints) Performing minimization step: 1857. Total energy = 7820.0407 kcal/mol (7802.7664 without restraints) Performing minimization step: 1858. Total energy = 7816.8454 kcal/mol (7799.5760 without restraints) Performing minimization step: 1859. Total energy = 7813.6527 kcal/mol (7796.3882 without restraints) Performing minimization step: 1860. Total energy = 7810.4626 kcal/mol (7793.2030 without restraints) Performing minimization step: 1861. Total energy = 7807.2750 kcal/mol (7790.0205 without restraints) Performing minimization step: 1862. Total energy = 7804.0904 kcal/mol (7786.8409 without restraints) Performing minimization step: 1863. Total energy = 7800.9081 kcal/mol (7783.6636 without restraints) Performing minimization step: 1864. Total energy = 7797.7286 kcal/mol (7780.4892 without restraints) Performing minimization step: 1865. Total energy = 7794.5518 kcal/mol (7777.3173 without restraints) Performing minimization step: 1866. Total energy = 7791.3773 kcal/mol (7774.1478 without restraints) Performing minimization step: 1867. Total energy = 7788.2054 kcal/mol (7770.9809 without restraints) Performing minimization step: 1868. Total energy = 7785.0362 kcal/mol (7767.8169 without restraints) Performing minimization step: 1869. Total energy = 7781.8698 kcal/mol (7764.6553 without restraints) Performing minimization step: 1870. Total energy = 7778.7056 kcal/mol (7761.4960 without restraints) Performing minimization step: 1871. Total energy = 7775.5438 kcal/mol (7758.3393 without restraints) Performing minimization step: 1872. Total energy = 7772.3847 kcal/mol (7755.1851 without restraints) Performing minimization step: 1873. Total energy = 7769.2282 kcal/mol (7752.0336 without restraints) Performing minimization step: 1874. Total energy = 7766.0742 kcal/mol (7748.8846 without restraints) Performing minimization step: 1875. Total energy = 7762.9226 kcal/mol (7745.7380 without restraints) Performing minimization step: 1876. Total energy = 7759.7734 kcal/mol (7742.5938 without restraints) Performing minimization step: 1877. Total energy = 7756.6269 kcal/mol (7739.4522 without restraints) Performing minimization step: 1878. Total energy = 7753.4828 kcal/mol (7736.3131 without restraints) Performing minimization step: 1879. Total energy = 7750.3410 kcal/mol (7733.1764 without restraints) Performing minimization step: 1880. Total energy = 7747.2015 kcal/mol (7730.0418 without restraints) Performing minimization step: 1881. Total energy = 7744.0648 kcal/mol (7726.9100 without restraints) Performing minimization step: 1882. Total energy = 7740.9308 kcal/mol (7723.7810 without restraints) Performing minimization step: 1883. Total energy = 7737.7995 kcal/mol (7720.6547 without restraints) Performing minimization step: 1884. Total energy = 7734.6704 kcal/mol (7717.5308 without restraints) Performing minimization step: 1885. Total energy = 7731.5446 kcal/mol (7714.4099 without restraints) Performing minimization step: 1886. Total energy = 7728.4205 kcal/mol (7711.2906 without restraints) Performing minimization step: 1887. Total energy = 7725.2985 kcal/mol (7708.1736 without restraints) Performing minimization step: 1888. Total energy = 7722.1791 kcal/mol (7705.0591 without restraints) Performing minimization step: 1889. Total energy = 7719.0619 kcal/mol (7701.9468 without restraints) Performing minimization step: 1890. Total energy = 7715.9470 kcal/mol (7698.8370 without restraints) Performing minimization step: 1891. Total energy = 7712.8342 kcal/mol (7695.7291 without restraints) Performing minimization step: 1892. Total energy = 7709.7243 kcal/mol (7692.6241 without restraints) Performing minimization step: 1893. Total energy = 7706.6167 kcal/mol (7689.5215 without restraints) Performing minimization step: 1894. Total energy = 7703.5117 kcal/mol (7686.4214 without restraints) Performing minimization step: 1895. Total energy = 7700.4092 kcal/mol (7683.3240 without restraints) Performing minimization step: 1896. Total energy = 7697.3087 kcal/mol (7680.2282 without restraints) Performing minimization step: 1897. Total energy = 7694.2105 kcal/mol (7677.1351 without restraints) Performing minimization step: 1898. Total energy = 7691.1147 kcal/mol (7674.0442 without restraints) Performing minimization step: 1899. Total energy = 7688.0212 kcal/mol (7670.9557 without restraints) Performing minimization step: 1900. Total energy = 7684.9301 kcal/mol (7667.8695 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 7681.8413 kcal/mol (7664.7857 without restraints) Performing minimization step: 1902. Total energy = 7678.7551 kcal/mol (7661.7044 without restraints) Performing minimization step: 1903. Total energy = 7675.6709 kcal/mol (7658.6252 without restraints) Performing minimization step: 1904. Total energy = 7672.5891 kcal/mol (7655.5483 without restraints) Performing minimization step: 1905. Total energy = 7669.5096 kcal/mol (7652.4738 without restraints) Performing minimization step: 1906. Total energy = 7666.4326 kcal/mol (7649.4017 without restraints) Performing minimization step: 1907. Total energy = 7663.3576 kcal/mol (7646.3316 without restraints) Performing minimization step: 1908. Total energy = 7660.2853 kcal/mol (7643.2642 without restraints) Performing minimization step: 1909. Total energy = 7657.2150 kcal/mol (7640.1990 without restraints) Performing minimization step: 1910. Total energy = 7654.1469 kcal/mol (7637.1357 without restraints) Performing minimization step: 1911. Total energy = 7651.0809 kcal/mol (7634.0745 without restraints) Performing minimization step: 1912. Total energy = 7648.0172 kcal/mol (7631.0158 without restraints) Performing minimization step: 1913. Total energy = 7644.9559 kcal/mol (7627.9595 without restraints) Performing minimization step: 1914. Total energy = 7641.8970 kcal/mol (7624.9055 without restraints) Performing minimization step: 1915. Total energy = 7638.8403 kcal/mol (7621.8537 without restraints) Performing minimization step: 1916. Total energy = 7635.7855 kcal/mol (7618.8039 without restraints) Performing minimization step: 1917. Total energy = 7632.7332 kcal/mol (7615.7565 without restraints) Performing minimization step: 1918. Total energy = 7629.6829 kcal/mol (7612.7111 without restraints) Performing minimization step: 1919. Total energy = 7626.6345 kcal/mol (7609.6675 without restraints) Performing minimization step: 1920. Total energy = 7623.5885 kcal/mol (7606.6265 without restraints) Performing minimization step: 1921. Total energy = 7620.5449 kcal/mol (7603.5878 without restraints) Performing minimization step: 1922. Total energy = 7617.5036 kcal/mol (7600.5514 without restraints) Performing minimization step: 1923. Total energy = 7614.4647 kcal/mol (7597.5176 without restraints) Performing minimization step: 1924. Total energy = 7611.4279 kcal/mol (7594.4855 without restraints) Performing minimization step: 1925. Total energy = 7608.3931 kcal/mol (7591.4559 without restraints) Performing minimization step: 1926. Total energy = 7605.3604 kcal/mol (7588.4279 without restraints) Performing minimization step: 1927. Total energy = 7602.3299 kcal/mol (7585.4022 without restraints) Performing minimization step: 1928. Total energy = 7599.3012 kcal/mol (7582.3784 without restraints) Performing minimization step: 1929. Total energy = 7596.2742 kcal/mol (7579.3564 without restraints) Performing minimization step: 1930. Total energy = 7593.2499 kcal/mol (7576.3369 without restraints) Performing minimization step: 1931. Total energy = 7590.2276 kcal/mol (7573.3195 without restraints) Performing minimization step: 1932. Total energy = 7587.2077 kcal/mol (7570.3045 without restraints) Performing minimization step: 1933. Total energy = 7584.1896 kcal/mol (7567.2913 without restraints) Performing minimization step: 1934. Total energy = 7581.1734 kcal/mol (7564.2800 without restraints) Performing minimization step: 1935. Total energy = 7578.1600 kcal/mol (7561.2715 without restraints) Performing minimization step: 1936. Total energy = 7575.1482 kcal/mol (7558.2646 without restraints) Performing minimization step: 1937. Total energy = 7572.1385 kcal/mol (7555.2597 without restraints) Performing minimization step: 1938. Total energy = 7569.1314 kcal/mol (7552.2575 without restraints) Performing minimization step: 1939. Total energy = 7566.1259 kcal/mol (7549.2568 without restraints) Performing minimization step: 1940. Total energy = 7563.1226 kcal/mol (7546.2584 without restraints) Performing minimization step: 1941. Total energy = 7560.1211 kcal/mol (7543.2618 without restraints) Performing minimization step: 1942. Total energy = 7557.1216 kcal/mol (7540.2672 without restraints) Performing minimization step: 1943. Total energy = 7554.1237 kcal/mol (7537.2741 without restraints) Performing minimization step: 1944. Total energy = 7551.1284 kcal/mol (7534.2838 without restraints) Performing minimization step: 1945. Total energy = 7548.1346 kcal/mol (7531.2947 without restraints) Performing minimization step: 1946. Total energy = 7545.1432 kcal/mol (7528.3083 without restraints) Performing minimization step: 1947. Total energy = 7542.1538 kcal/mol (7525.3237 without restraints) Performing minimization step: 1948. Total energy = 7539.1663 kcal/mol (7522.3411 without restraints) Performing minimization step: 1949. Total energy = 7536.1810 kcal/mol (7519.3607 without restraints) Performing minimization step: 1950. Total energy = 7533.1977 kcal/mol (7516.3822 without restraints) Performing minimization step: 1951. Total energy = 7530.2158 kcal/mol (7513.4052 without restraints) Performing minimization step: 1952. Total energy = 7527.2364 kcal/mol (7510.4306 without restraints) Performing minimization step: 1953. Total energy = 7524.2589 kcal/mol (7507.4580 without restraints) Performing minimization step: 1954. Total energy = 7521.2835 kcal/mol (7504.4875 without restraints) Performing minimization step: 1955. Total energy = 7518.3100 kcal/mol (7501.5188 without restraints) Performing minimization step: 1956. Total energy = 7515.3383 kcal/mol (7498.5519 without restraints) Performing minimization step: 1957. Total energy = 7512.3689 kcal/mol (7495.5874 without restraints) Performing minimization step: 1958. Total energy = 7509.4013 kcal/mol (7492.6247 without restraints) Performing minimization step: 1959. Total energy = 7506.4356 kcal/mol (7489.6637 without restraints) Performing minimization step: 1960. Total energy = 7503.4719 kcal/mol (7486.7049 without restraints) Performing minimization step: 1961. Total energy = 7500.5100 kcal/mol (7483.7478 without restraints) Performing minimization step: 1962. Total energy = 7497.5499 kcal/mol (7480.7926 without restraints) Performing minimization step: 1963. Total energy = 7494.5916 kcal/mol (7477.8391 without restraints) Performing minimization step: 1964. Total energy = 7491.6354 kcal/mol (7474.8877 without restraints) Performing minimization step: 1965. Total energy = 7488.6810 kcal/mol (7471.9381 without restraints) Performing minimization step: 1966. Total energy = 7485.7284 kcal/mol (7468.9904 without restraints) Performing minimization step: 1967. Total energy = 7482.7774 kcal/mol (7466.0442 without restraints) Performing minimization step: 1968. Total energy = 7479.8282 kcal/mol (7463.0999 without restraints) Performing minimization step: 1969. Total energy = 7476.8813 kcal/mol (7460.1578 without restraints) Performing minimization step: 1970. Total energy = 7473.9362 kcal/mol (7457.2175 without restraints) Performing minimization step: 1971. Total energy = 7470.9928 kcal/mol (7454.2790 without restraints) Performing minimization step: 1972. Total energy = 7468.0515 kcal/mol (7451.3424 without restraints) Performing minimization step: 1973. Total energy = 7465.1119 kcal/mol (7448.4077 without restraints) Performing minimization step: 1974. Total energy = 7462.1742 kcal/mol (7445.4748 without restraints) Performing minimization step: 1975. Total energy = 7459.2385 kcal/mol (7442.5437 without restraints) Performing minimization step: 1976. Total energy = 7456.3043 kcal/mol (7439.6144 without restraints) Performing minimization step: 1977. Total energy = 7453.3720 kcal/mol (7436.6869 without restraints) Performing minimization step: 1978. Total energy = 7450.4416 kcal/mol (7433.7612 without restraints) Performing minimization step: 1979. Total energy = 7447.5126 kcal/mol (7430.8371 without restraints) Performing minimization step: 1980. Total energy = 7444.5859 kcal/mol (7427.9153 without restraints) Performing minimization step: 1981. Total energy = 7441.6609 kcal/mol (7424.9950 without restraints) Performing minimization step: 1982. Total energy = 7438.7375 kcal/mol (7422.0765 without restraints) Performing minimization step: 1983. Total energy = 7435.8159 kcal/mol (7419.1596 without restraints) Performing minimization step: 1984. Total energy = 7432.8964 kcal/mol (7416.2448 without restraints) Performing minimization step: 1985. Total energy = 7429.9785 kcal/mol (7413.3319 without restraints) Performing minimization step: 1986. Total energy = 7427.0624 kcal/mol (7410.4205 without restraints) Performing minimization step: 1987. Total energy = 7424.1479 kcal/mol (7407.5108 without restraints) Performing minimization step: 1988. Total energy = 7421.2352 kcal/mol (7404.6028 without restraints) Performing minimization step: 1989. Total energy = 7418.3239 kcal/mol (7401.6962 without restraints) Performing minimization step: 1990. Total energy = 7415.4145 kcal/mol (7398.7917 without restraints) Performing minimization step: 1991. Total energy = 7412.5068 kcal/mol (7395.8887 without restraints) Performing minimization step: 1992. Total energy = 7409.6009 kcal/mol (7392.9876 without restraints) Performing minimization step: 1993. Total energy = 7406.6970 kcal/mol (7390.0886 without restraints) Performing minimization step: 1994. Total energy = 7403.7943 kcal/mol (7387.1905 without restraints) Performing minimization step: 1995. Total energy = 7400.8936 kcal/mol (7384.2946 without restraints) Performing minimization step: 1996. Total energy = 7397.9945 kcal/mol (7381.4003 without restraints) Performing minimization step: 1997. Total energy = 7395.0975 kcal/mol (7378.5081 without restraints) Performing minimization step: 1998. Total energy = 7392.2022 kcal/mol (7375.6175 without restraints) Performing minimization step: 1999. Total energy = 7389.3082 kcal/mol (7372.7283 without restraints) Performing minimization step: 2000. Total energy = 7386.4158 kcal/mol (7369.8406 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 7383.5255 kcal/mol (7366.9552 without restraints) Performing minimization step: 2002. Total energy = 7380.6367 kcal/mol (7364.0710 without restraints) Performing minimization step: 2003. Total energy = 7377.7492 kcal/mol (7361.1883 without restraints) Performing minimization step: 2004. Total energy = 7374.8637 kcal/mol (7358.3075 without restraints) Performing minimization step: 2005. Total energy = 7371.9798 kcal/mol (7355.4284 without restraints) Performing minimization step: 2006. Total energy = 7369.0972 kcal/mol (7352.5505 without restraints) Performing minimization step: 2007. Total energy = 7366.2170 kcal/mol (7349.6750 without restraints) Performing minimization step: 2008. Total energy = 7363.3376 kcal/mol (7346.8003 without restraints) Performing minimization step: 2009. Total energy = 7360.4604 kcal/mol (7343.9281 without restraints) Performing minimization step: 2010. Total energy = 7357.5846 kcal/mol (7341.0569 without restraints) Performing minimization step: 2011. Total energy = 7354.7097 kcal/mol (7338.1866 without restraints) Performing minimization step: 2012. Total energy = 7351.8368 kcal/mol (7335.3186 without restraints) Performing minimization step: 2013. Total energy = 7348.9658 kcal/mol (7332.4522 without restraints) Performing minimization step: 2014. Total energy = 7346.0957 kcal/mol (7329.5867 without restraints) Performing minimization step: 2015. Total energy = 7343.2271 kcal/mol (7326.7229 without restraints) Performing minimization step: 2016. Total energy = 7340.3604 kcal/mol (7323.8609 without restraints) Performing minimization step: 2017. Total energy = 7337.4952 kcal/mol (7321.0005 without restraints) Performing minimization step: 2018. Total energy = 7334.6314 kcal/mol (7318.1414 without restraints) Performing minimization step: 2019. Total energy = 7331.7694 kcal/mol (7315.2841 without restraints) Performing minimization step: 2020. Total energy = 7328.9092 kcal/mol (7312.4286 without restraints) Performing minimization step: 2021. Total energy = 7326.0504 kcal/mol (7309.5746 without restraints) Performing minimization step: 2022. Total energy = 7323.1930 kcal/mol (7306.7218 without restraints) Performing minimization step: 2023. Total energy = 7320.3371 kcal/mol (7303.8706 without restraints) Performing minimization step: 2024. Total energy = 7317.4827 kcal/mol (7301.0209 without restraints) Performing minimization step: 2025. Total energy = 7314.6300 kcal/mol (7298.1729 without restraints) Performing minimization step: 2026. Total energy = 7311.7785 kcal/mol (7295.3261 without restraints) Performing minimization step: 2027. Total energy = 7308.9286 kcal/mol (7292.4809 without restraints) Performing minimization step: 2028. Total energy = 7306.0802 kcal/mol (7289.6372 without restraints) Performing minimization step: 2029. Total energy = 7303.2332 kcal/mol (7286.7949 without restraints) Performing minimization step: 2030. Total energy = 7300.3880 kcal/mol (7283.9543 without restraints) Performing minimization step: 2031. Total energy = 7297.5440 kcal/mol (7281.1150 without restraints) Performing minimization step: 2032. Total energy = 7294.7016 kcal/mol (7278.2773 without restraints) Performing minimization step: 2033. Total energy = 7291.8610 kcal/mol (7275.4415 without restraints) Performing minimization step: 2034. Total energy = 7289.0215 kcal/mol (7272.6066 without restraints) Performing minimization step: 2035. Total energy = 7286.1836 kcal/mol (7269.7733 without restraints) Performing minimization step: 2036. Total energy = 7283.3468 kcal/mol (7266.9411 without restraints) Performing minimization step: 2037. Total energy = 7280.5116 kcal/mol (7264.1106 without restraints) Performing minimization step: 2038. Total energy = 7277.6780 kcal/mol (7261.2818 without restraints) Performing minimization step: 2039. Total energy = 7274.8462 kcal/mol (7258.4546 without restraints) Performing minimization step: 2040. Total energy = 7272.0154 kcal/mol (7255.6285 without restraints) Performing minimization step: 2041. Total energy = 7269.1861 kcal/mol (7252.8038 without restraints) Performing minimization step: 2042. Total energy = 7266.3580 kcal/mol (7249.9804 without restraints) Performing minimization step: 2043. Total energy = 7263.5316 kcal/mol (7247.1586 without restraints) Performing minimization step: 2044. Total energy = 7260.7061 kcal/mol (7244.3378 without restraints) Performing minimization step: 2045. Total energy = 7257.8825 kcal/mol (7241.5188 without restraints) Performing minimization step: 2046. Total energy = 7255.0605 kcal/mol (7238.7015 without restraints) Performing minimization step: 2047. Total energy = 7252.2395 kcal/mol (7235.8850 without restraints) Performing minimization step: 2048. Total energy = 7249.4199 kcal/mol (7233.0702 without restraints) Performing minimization step: 2049. Total energy = 7246.6017 kcal/mol (7230.2566 without restraints) Performing minimization step: 2050. Total energy = 7243.7848 kcal/mol (7227.4443 without restraints) Performing minimization step: 2051. Total energy = 7240.9695 kcal/mol (7224.6336 without restraints) Performing minimization step: 2052. Total energy = 7238.1548 kcal/mol (7221.8234 without restraints) Performing minimization step: 2053. Total energy = 7235.3418 kcal/mol (7219.0151 without restraints) Performing minimization step: 2054. Total energy = 7232.5299 kcal/mol (7216.2075 without restraints) Performing minimization step: 2055. Total energy = 7229.7193 kcal/mol (7213.4020 without restraints) Performing minimization step: 2056. Total energy = 7226.9105 kcal/mol (7210.5977 without restraints) Performing minimization step: 2057. Total energy = 7224.1029 kcal/mol (7207.7947 without restraints) Performing minimization step: 2058. Total energy = 7221.2967 kcal/mol (7204.9932 without restraints) Performing minimization step: 2059. Total energy = 7218.4920 kcal/mol (7202.1931 without restraints) Performing minimization step: 2060. Total energy = 7215.6885 kcal/mol (7199.3942 without restraints) Performing minimization step: 2061. Total energy = 7212.8864 kcal/mol (7196.5967 without restraints) Performing minimization step: 2062. Total energy = 7210.0859 kcal/mol (7193.8009 without restraints) Performing minimization step: 2063. Total energy = 7207.2865 kcal/mol (7191.0061 without restraints) Performing minimization step: 2064. Total energy = 7204.4891 kcal/mol (7188.2133 without restraints) Performing minimization step: 2065. Total energy = 7201.6921 kcal/mol (7185.4208 without restraints) Performing minimization step: 2066. Total energy = 7198.8961 kcal/mol (7182.6294 without restraints) Performing minimization step: 2067. Total energy = 7196.1019 kcal/mol (7179.8398 without restraints) Performing minimization step: 2068. Total energy = 7193.3090 kcal/mol (7177.0514 without restraints) Performing minimization step: 2069. Total energy = 7190.5171 kcal/mol (7174.2641 without restraints) Performing minimization step: 2070. Total energy = 7187.7265 kcal/mol (7171.4780 without restraints) Performing minimization step: 2071. Total energy = 7184.9370 kcal/mol (7168.6931 without restraints) Performing minimization step: 2072. Total energy = 7182.1488 kcal/mol (7165.9095 without restraints) Performing minimization step: 2073. Total energy = 7179.3618 kcal/mol (7163.1272 without restraints) Performing minimization step: 2074. Total energy = 7176.5763 kcal/mol (7160.3463 without restraints) Performing minimization step: 2075. Total energy = 7173.7917 kcal/mol (7157.5662 without restraints) Performing minimization step: 2076. Total energy = 7171.0084 kcal/mol (7154.7875 without restraints) Performing minimization step: 2077. Total energy = 7168.2266 kcal/mol (7152.0104 without restraints) Performing minimization step: 2078. Total energy = 7165.4459 kcal/mol (7149.2340 without restraints) Performing minimization step: 2079. Total energy = 7162.6660 kcal/mol (7146.4589 without restraints) Performing minimization step: 2080. Total energy = 7159.8880 kcal/mol (7143.6853 without restraints) Performing minimization step: 2081. Total energy = 7157.1109 kcal/mol (7140.9128 without restraints) Performing minimization step: 2082. Total energy = 7154.3351 kcal/mol (7138.1415 without restraints) Performing minimization step: 2083. Total energy = 7151.5605 kcal/mol (7135.3716 without restraints) Performing minimization step: 2084. Total energy = 7148.7870 kcal/mol (7132.6025 without restraints) Performing minimization step: 2085. Total energy = 7146.0148 kcal/mol (7129.8349 without restraints) Performing minimization step: 2086. Total energy = 7143.2440 kcal/mol (7127.0686 without restraints) Performing minimization step: 2087. Total energy = 7140.4741 kcal/mol (7124.3032 without restraints) Performing minimization step: 2088. Total energy = 7137.7052 kcal/mol (7121.5389 without restraints) Performing minimization step: 2089. Total energy = 7134.9375 kcal/mol (7118.7758 without restraints) Performing minimization step: 2090. Total energy = 7132.1710 kcal/mol (7116.0138 without restraints) Performing minimization step: 2091. Total energy = 7129.4058 kcal/mol (7113.2530 without restraints) Performing minimization step: 2092. Total energy = 7126.6420 kcal/mol (7110.4937 without restraints) Performing minimization step: 2093. Total energy = 7123.8792 kcal/mol (7107.7356 without restraints) Performing minimization step: 2094. Total energy = 7121.1174 kcal/mol (7104.9781 without restraints) Performing minimization step: 2095. Total energy = 7118.3564 kcal/mol (7102.2216 without restraints) Performing minimization step: 2096. Total energy = 7115.5967 kcal/mol (7099.4666 without restraints) Performing minimization step: 2097. Total energy = 7112.8383 kcal/mol (7096.7128 without restraints) Performing minimization step: 2098. Total energy = 7110.0809 kcal/mol (7093.9598 without restraints) Performing minimization step: 2099. Total energy = 7107.3248 kcal/mol (7091.2082 without restraints) Performing minimization step: 2100. Total energy = 7104.5698 kcal/mol (7088.4577 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 7101.8158 kcal/mol (7085.7082 without restraints) Performing minimization step: 2102. Total energy = 7099.0629 kcal/mol (7082.9598 without restraints) Performing minimization step: 2103. Total energy = 7096.3112 kcal/mol (7080.2126 without restraints) Performing minimization step: 2104. Total energy = 7093.5605 kcal/mol (7077.4663 without restraints) Performing minimization step: 2105. Total energy = 7090.8110 kcal/mol (7074.7214 without restraints) Performing minimization step: 2106. Total energy = 7088.0625 kcal/mol (7071.9773 without restraints) Performing minimization step: 2107. Total energy = 7085.3152 kcal/mol (7069.2348 without restraints) Performing minimization step: 2108. Total energy = 7082.5689 kcal/mol (7066.4927 without restraints) Performing minimization step: 2109. Total energy = 7079.8236 kcal/mol (7063.7519 without restraints) Performing minimization step: 2110. Total energy = 7077.0795 kcal/mol (7061.0121 without restraints) Performing minimization step: 2111. Total energy = 7074.3361 kcal/mol (7058.2733 without restraints) Performing minimization step: 2112. Total energy = 7071.5938 kcal/mol (7055.5355 without restraints) Performing minimization step: 2113. Total energy = 7068.8529 kcal/mol (7052.7991 without restraints) Performing minimization step: 2114. Total energy = 7066.1126 kcal/mol (7050.0633 without restraints) Performing minimization step: 2115. Total energy = 7063.3739 kcal/mol (7047.3290 without restraints) Performing minimization step: 2116. Total energy = 7060.6363 kcal/mol (7044.5959 without restraints) Performing minimization step: 2117. Total energy = 7057.8992 kcal/mol (7041.8632 without restraints) Performing minimization step: 2118. Total energy = 7055.1634 kcal/mol (7039.1320 without restraints) Performing minimization step: 2119. Total energy = 7052.4288 kcal/mol (7036.4016 without restraints) Performing minimization step: 2120. Total energy = 7049.6949 kcal/mol (7033.6723 without restraints) Performing minimization step: 2121. Total energy = 7046.9623 kcal/mol (7030.9441 without restraints) Performing minimization step: 2122. Total energy = 7044.2302 kcal/mol (7028.2163 without restraints) Performing minimization step: 2123. Total energy = 7041.4995 kcal/mol (7025.4902 without restraints) Performing minimization step: 2124. Total energy = 7038.7695 kcal/mol (7022.7647 without restraints) Performing minimization step: 2125. Total energy = 7036.0410 kcal/mol (7020.0405 without restraints) Performing minimization step: 2126. Total energy = 7033.3133 kcal/mol (7017.3173 without restraints) Performing minimization step: 2127. Total energy = 7030.5866 kcal/mol (7014.5950 without restraints) Performing minimization step: 2128. Total energy = 7027.8613 kcal/mol (7011.8742 without restraints) Performing minimization step: 2129. Total energy = 7025.1365 kcal/mol (7009.1538 without restraints) Performing minimization step: 2130. Total energy = 7022.4128 kcal/mol (7006.4344 without restraints) Performing minimization step: 2131. Total energy = 7019.6897 kcal/mol (7003.7158 without restraints) Performing minimization step: 2132. Total energy = 7016.9678 kcal/mol (7000.9983 without restraints) Performing minimization step: 2133. Total energy = 7014.2469 kcal/mol (6998.2819 without restraints) Performing minimization step: 2134. Total energy = 7011.5273 kcal/mol (6995.5667 without restraints) Performing minimization step: 2135. Total energy = 7008.8084 kcal/mol (6992.8521 without restraints) Performing minimization step: 2136. Total energy = 7006.0904 kcal/mol (6990.1385 without restraints) Performing minimization step: 2137. Total energy = 7003.3733 kcal/mol (6987.4259 without restraints) Performing minimization step: 2138. Total energy = 7000.6574 kcal/mol (6984.7144 without restraints) Performing minimization step: 2139. Total energy = 6997.9425 kcal/mol (6982.0039 without restraints) Performing minimization step: 2140. Total energy = 6995.2287 kcal/mol (6979.2945 without restraints) Performing minimization step: 2141. Total energy = 6992.5157 kcal/mol (6976.5858 without restraints) Performing minimization step: 2142. Total energy = 6989.8036 kcal/mol (6973.8781 without restraints) Performing minimization step: 2143. Total energy = 6987.0922 kcal/mol (6971.1711 without restraints) Performing minimization step: 2144. Total energy = 6984.3823 kcal/mol (6968.4656 without restraints) Performing minimization step: 2145. Total energy = 6981.6729 kcal/mol (6965.7607 without restraints) Performing minimization step: 2146. Total energy = 6978.9643 kcal/mol (6963.0563 without restraints) Performing minimization step: 2147. Total energy = 6976.2569 kcal/mol (6960.3533 without restraints) Performing minimization step: 2148. Total energy = 6973.5502 kcal/mol (6957.6509 without restraints) Performing minimization step: 2149. Total energy = 6970.8441 kcal/mol (6954.9492 without restraints) Performing minimization step: 2150. Total energy = 6968.1390 kcal/mol (6952.2484 without restraints) Performing minimization step: 2151. Total energy = 6965.4348 kcal/mol (6949.5487 without restraints) Performing minimization step: 2152. Total energy = 6962.7317 kcal/mol (6946.8499 without restraints) Performing minimization step: 2153. Total energy = 6960.0294 kcal/mol (6944.1519 without restraints) Performing minimization step: 2154. Total energy = 6957.3277 kcal/mol (6941.4546 without restraints) Performing minimization step: 2155. Total energy = 6954.6272 kcal/mol (6938.7584 without restraints) Performing minimization step: 2156. Total energy = 6951.9275 kcal/mol (6936.0631 without restraints) Performing minimization step: 2157. Total energy = 6949.2291 kcal/mol (6933.3690 without restraints) Performing minimization step: 2158. Total energy = 6946.5310 kcal/mol (6930.6753 without restraints) Performing minimization step: 2159. Total energy = 6943.8344 kcal/mol (6927.9832 without restraints) Performing minimization step: 2160. Total energy = 6941.1384 kcal/mol (6925.2914 without restraints) Performing minimization step: 2161. Total energy = 6938.4432 kcal/mol (6922.6005 without restraints) Performing minimization step: 2162. Total energy = 6935.7488 kcal/mol (6919.9104 without restraints) Performing minimization step: 2163. Total energy = 6933.0556 kcal/mol (6917.2215 without restraints) Performing minimization step: 2164. Total energy = 6930.3629 kcal/mol (6914.5332 without restraints) Performing minimization step: 2165. Total energy = 6927.6709 kcal/mol (6911.8455 without restraints) Performing minimization step: 2166. Total energy = 6924.9802 kcal/mol (6909.1591 without restraints) Performing minimization step: 2167. Total energy = 6922.2899 kcal/mol (6906.4731 without restraints) Performing minimization step: 2168. Total energy = 6919.6008 kcal/mol (6903.7884 without restraints) Performing minimization step: 2169. Total energy = 6916.9122 kcal/mol (6901.1040 without restraints) Performing minimization step: 2170. Total energy = 6914.2245 kcal/mol (6898.4207 without restraints) Performing minimization step: 2171. Total energy = 6911.5382 kcal/mol (6895.7387 without restraints) Performing minimization step: 2172. Total energy = 6908.8528 kcal/mol (6893.0576 without restraints) Performing minimization step: 2173. Total energy = 6906.1677 kcal/mol (6890.3767 without restraints) Performing minimization step: 2174. Total energy = 6903.4839 kcal/mol (6887.6973 without restraints) Performing minimization step: 2175. Total energy = 6900.8007 kcal/mol (6885.0183 without restraints) Performing minimization step: 2176. Total energy = 6898.1178 kcal/mol (6882.3395 without restraints) Performing minimization step: 2177. Total energy = 6895.4356 kcal/mol (6879.6618 without restraints) Performing minimization step: 2178. Total energy = 6892.7547 kcal/mol (6876.9852 without restraints) Performing minimization step: 2179. Total energy = 6890.0746 kcal/mol (6874.3094 without restraints) Performing minimization step: 2180. Total energy = 6887.3950 kcal/mol (6871.6339 without restraints) Performing minimization step: 2181. Total energy = 6884.7162 kcal/mol (6868.9595 without restraints) Performing minimization step: 2182. Total energy = 6882.0385 kcal/mol (6866.2862 without restraints) Performing minimization step: 2183. Total energy = 6879.3616 kcal/mol (6863.6135 without restraints) Performing minimization step: 2184. Total energy = 6876.6855 kcal/mol (6860.9417 without restraints) Performing minimization step: 2185. Total energy = 6874.0100 kcal/mol (6858.2705 without restraints) Performing minimization step: 2186. Total energy = 6871.3356 kcal/mol (6855.6003 without restraints) Performing minimization step: 2187. Total energy = 6868.6616 kcal/mol (6852.9304 without restraints) Performing minimization step: 2188. Total energy = 6865.9885 kcal/mol (6850.2617 without restraints) Performing minimization step: 2189. Total energy = 6863.3163 kcal/mol (6847.5938 without restraints) Performing minimization step: 2190. Total energy = 6860.6449 kcal/mol (6844.9266 without restraints) Performing minimization step: 2191. Total energy = 6857.9741 kcal/mol (6842.2601 without restraints) Performing minimization step: 2192. Total energy = 6855.3041 kcal/mol (6839.5943 without restraints) Performing minimization step: 2193. Total energy = 6852.6349 kcal/mol (6836.9294 without restraints) Performing minimization step: 2194. Total energy = 6849.9662 kcal/mol (6834.2647 without restraints) Performing minimization step: 2195. Total energy = 6847.2984 kcal/mol (6831.6014 without restraints) Performing minimization step: 2196. Total energy = 6844.6317 kcal/mol (6828.9389 without restraints) Performing minimization step: 2197. Total energy = 6841.9658 kcal/mol (6826.2771 without restraints) Performing minimization step: 2198. Total energy = 6839.3007 kcal/mol (6823.6163 without restraints) Performing minimization step: 2199. Total energy = 6836.6359 kcal/mol (6820.9557 without restraints) Performing minimization step: 2200. Total energy = 6833.9721 kcal/mol (6818.2962 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 6831.3089 kcal/mol (6815.6372 without restraints) Performing minimization step: 2202. Total energy = 6828.6465 kcal/mol (6812.9790 without restraints) Performing minimization step: 2203. Total energy = 6825.9847 kcal/mol (6810.3215 without restraints) Performing minimization step: 2204. Total energy = 6823.3238 kcal/mol (6807.6648 without restraints) Performing minimization step: 2205. Total energy = 6820.6632 kcal/mol (6805.0083 without restraints) Performing minimization step: 2206. Total energy = 6818.0036 kcal/mol (6802.3529 without restraints) Performing minimization step: 2207. Total energy = 6815.3448 kcal/mol (6799.6984 without restraints) Performing minimization step: 2208. Total energy = 6812.6866 kcal/mol (6797.0443 without restraints) Performing minimization step: 2209. Total energy = 6810.0292 kcal/mol (6794.3911 without restraints) Performing minimization step: 2210. Total energy = 6807.3727 kcal/mol (6791.7388 without restraints) Performing minimization step: 2211. Total energy = 6804.7167 kcal/mol (6789.0871 without restraints) Performing minimization step: 2212. Total energy = 6802.0615 kcal/mol (6786.4360 without restraints) Performing minimization step: 2213. Total energy = 6799.4072 kcal/mol (6783.7859 without restraints) Performing minimization step: 2214. Total energy = 6796.7534 kcal/mol (6781.1363 without restraints) Performing minimization step: 2215. Total energy = 6794.1003 kcal/mol (6778.4874 without restraints) Performing minimization step: 2216. Total energy = 6791.4478 kcal/mol (6775.8390 without restraints) Performing minimization step: 2217. Total energy = 6788.7964 kcal/mol (6773.1918 without restraints) Performing minimization step: 2218. Total energy = 6786.1455 kcal/mol (6770.5451 without restraints) Performing minimization step: 2219. Total energy = 6783.4954 kcal/mol (6767.8991 without restraints) Performing minimization step: 2220. Total energy = 6780.8454 kcal/mol (6765.2533 without restraints) Performing minimization step: 2221. Total energy = 6778.1965 kcal/mol (6762.6086 without restraints) Performing minimization step: 2222. Total energy = 6775.5485 kcal/mol (6759.9648 without restraints) Performing minimization step: 2223. Total energy = 6772.9010 kcal/mol (6757.3214 without restraints) Performing minimization step: 2224. Total energy = 6770.2544 kcal/mol (6754.6790 without restraints) Performing minimization step: 2225. Total energy = 6767.6081 kcal/mol (6752.0368 without restraints) Performing minimization step: 2226. Total energy = 6764.9627 kcal/mol (6749.3956 without restraints) Performing minimization step: 2227. Total energy = 6762.3178 kcal/mol (6746.7549 without restraints) Performing minimization step: 2228. Total energy = 6759.6733 kcal/mol (6744.1144 without restraints) Performing minimization step: 2229. Total energy = 6757.0299 kcal/mol (6741.4752 without restraints) Performing minimization step: 2230. Total energy = 6754.3871 kcal/mol (6738.8366 without restraints) Performing minimization step: 2231. Total energy = 6751.7455 kcal/mol (6736.1991 without restraints) Performing minimization step: 2232. Total energy = 6749.1041 kcal/mol (6733.5618 without restraints) Performing minimization step: 2233. Total energy = 6746.4638 kcal/mol (6730.9256 without restraints) Performing minimization step: 2234. Total energy = 6743.8235 kcal/mol (6728.2895 without restraints) Performing minimization step: 2235. Total energy = 6741.1842 kcal/mol (6725.6543 without restraints) Performing minimization step: 2236. Total energy = 6738.5453 kcal/mol (6723.0195 without restraints) Performing minimization step: 2237. Total energy = 6735.9073 kcal/mol (6720.3857 without restraints) Performing minimization step: 2238. Total energy = 6733.2699 kcal/mol (6717.7524 without restraints) Performing minimization step: 2239. Total energy = 6730.6330 kcal/mol (6715.1195 without restraints) Performing minimization step: 2240. Total energy = 6727.9967 kcal/mol (6712.4874 without restraints) Performing minimization step: 2241. Total energy = 6725.3613 kcal/mol (6709.8561 without restraints) Performing minimization step: 2242. Total energy = 6722.7262 kcal/mol (6707.2250 without restraints) Performing minimization step: 2243. Total energy = 6720.0920 kcal/mol (6704.5950 without restraints) Performing minimization step: 2244. Total energy = 6717.4586 kcal/mol (6701.9657 without restraints) Performing minimization step: 2245. Total energy = 6714.8258 kcal/mol (6699.3370 without restraints) Performing minimization step: 2246. Total energy = 6712.1935 kcal/mol (6696.7088 without restraints) Performing minimization step: 2247. Total energy = 6709.5620 kcal/mol (6694.0814 without restraints) Performing minimization step: 2248. Total energy = 6706.9312 kcal/mol (6691.4547 without restraints) Performing minimization step: 2249. Total energy = 6704.3008 kcal/mol (6688.8283 without restraints) Performing minimization step: 2250. Total energy = 6701.6715 kcal/mol (6686.2032 without restraints) Performing minimization step: 2251. Total energy = 6699.0424 kcal/mol (6683.5781 without restraints) Performing minimization step: 2252. Total energy = 6696.4143 kcal/mol (6680.9541 without restraints) Performing minimization step: 2253. Total energy = 6693.7872 kcal/mol (6678.3311 without restraints) Performing minimization step: 2254. Total energy = 6691.1604 kcal/mol (6675.7084 without restraints) Performing minimization step: 2255. Total energy = 6688.5340 kcal/mol (6673.0860 without restraints) Performing minimization step: 2256. Total energy = 6685.9086 kcal/mol (6670.4648 without restraints) Performing minimization step: 2257. Total energy = 6683.2838 kcal/mol (6667.8442 without restraints) Performing minimization step: 2258. Total energy = 6680.6595 kcal/mol (6665.2238 without restraints) Performing minimization step: 2259. Total energy = 6678.0357 kcal/mol (6662.6040 without restraints) Performing minimization step: 2260. Total energy = 6675.4122 kcal/mol (6659.9846 without restraints) Performing minimization step: 2261. Total energy = 6672.7897 kcal/mol (6657.3661 without restraints) Performing minimization step: 2262. Total energy = 6670.1678 kcal/mol (6654.7482 without restraints) Performing minimization step: 2263. Total energy = 6667.5464 kcal/mol (6652.1309 without restraints) Performing minimization step: 2264. Total energy = 6664.9259 kcal/mol (6649.5145 without restraints) Performing minimization step: 2265. Total energy = 6662.3058 kcal/mol (6646.8985 without restraints) Performing minimization step: 2266. Total energy = 6659.6864 kcal/mol (6644.2830 without restraints) Performing minimization step: 2267. Total energy = 6657.0676 kcal/mol (6641.6685 without restraints) Performing minimization step: 2268. Total energy = 6654.4497 kcal/mol (6639.0545 without restraints) Performing minimization step: 2269. Total energy = 6651.8322 kcal/mol (6636.4410 without restraints) Performing minimization step: 2270. Total energy = 6649.2152 kcal/mol (6633.8280 without restraints) Performing minimization step: 2271. Total energy = 6646.5986 kcal/mol (6631.2154 without restraints) Performing minimization step: 2272. Total energy = 6643.9828 kcal/mol (6628.6037 without restraints) Performing minimization step: 2273. Total energy = 6641.3677 kcal/mol (6625.9926 without restraints) Performing minimization step: 2274. Total energy = 6638.7532 kcal/mol (6623.3820 without restraints) Performing minimization step: 2275. Total energy = 6636.1395 kcal/mol (6620.7725 without restraints) Performing minimization step: 2276. Total energy = 6633.5265 kcal/mol (6618.1635 without restraints) Performing minimization step: 2277. Total energy = 6630.9138 kcal/mol (6615.5548 without restraints) Performing minimization step: 2278. Total energy = 6628.3015 kcal/mol (6612.9464 without restraints) Performing minimization step: 2279. Total energy = 6625.6900 kcal/mol (6610.3391 without restraints) Performing minimization step: 2280. Total energy = 6623.0799 kcal/mol (6607.7329 without restraints) Performing minimization step: 2281. Total energy = 6620.4696 kcal/mol (6605.1266 without restraints) Performing minimization step: 2282. Total energy = 6617.8599 kcal/mol (6602.5209 without restraints) Performing minimization step: 2283. Total energy = 6615.2508 kcal/mol (6599.9158 without restraints) Performing minimization step: 2284. Total energy = 6612.6425 kcal/mol (6597.3115 without restraints) Performing minimization step: 2285. Total energy = 6610.0346 kcal/mol (6594.7076 without restraints) Performing minimization step: 2286. Total energy = 6607.4277 kcal/mol (6592.1047 without restraints) Performing minimization step: 2287. Total energy = 6604.8217 kcal/mol (6589.5027 without restraints) Performing minimization step: 2288. Total energy = 6602.2157 kcal/mol (6586.9006 without restraints) Performing minimization step: 2289. Total energy = 6599.6103 kcal/mol (6584.2991 without restraints) Performing minimization step: 2290. Total energy = 6597.0063 kcal/mol (6581.6993 without restraints) Performing minimization step: 2291. Total energy = 6594.4019 kcal/mol (6579.0988 without restraints) Performing minimization step: 2292. Total energy = 6591.7983 kcal/mol (6576.4990 without restraints) Performing minimization step: 2293. Total energy = 6589.1952 kcal/mol (6573.9001 without restraints) Performing minimization step: 2294. Total energy = 6586.5936 kcal/mol (6571.3026 without restraints) Performing minimization step: 2295. Total energy = 6583.9918 kcal/mol (6568.7044 without restraints) Performing minimization step: 2296. Total energy = 6581.3908 kcal/mol (6566.1075 without restraints) Performing minimization step: 2297. Total energy = 6578.7898 kcal/mol (6563.5105 without restraints) Performing minimization step: 2298. Total energy = 6576.1900 kcal/mol (6560.9145 without restraints) Performing minimization step: 2299. Total energy = 6573.5904 kcal/mol (6558.3190 without restraints) Performing minimization step: 2300. Total energy = 6570.9911 kcal/mol (6555.7235 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 6568.3926 kcal/mol (6553.1289 without restraints) Performing minimization step: 2302. Total energy = 6565.7950 kcal/mol (6550.5355 without restraints) Performing minimization step: 2303. Total energy = 6563.1981 kcal/mol (6547.9425 without restraints) Performing minimization step: 2304. Total energy = 6560.6017 kcal/mol (6545.3501 without restraints) Performing minimization step: 2305. Total energy = 6558.0064 kcal/mol (6542.7587 without restraints) Performing minimization step: 2306. Total energy = 6555.4110 kcal/mol (6540.1672 without restraints) Performing minimization step: 2307. Total energy = 6552.8162 kcal/mol (6537.5764 without restraints) Performing minimization step: 2308. Total energy = 6550.2218 kcal/mol (6534.9858 without restraints) Performing minimization step: 2309. Total energy = 6547.6286 kcal/mol (6532.3966 without restraints) Performing minimization step: 2310. Total energy = 6545.0356 kcal/mol (6529.8075 without restraints) Performing minimization step: 2311. Total energy = 6542.4432 kcal/mol (6527.2192 without restraints) Performing minimization step: 2312. Total energy = 6539.8517 kcal/mol (6524.6315 without restraints) Performing minimization step: 2313. Total energy = 6537.2604 kcal/mol (6522.0441 without restraints) Performing minimization step: 2314. Total energy = 6534.6699 kcal/mol (6519.4575 without restraints) Performing minimization step: 2315. Total energy = 6532.0797 kcal/mol (6516.8713 without restraints) Performing minimization step: 2316. Total energy = 6529.4904 kcal/mol (6514.2857 without restraints) Performing minimization step: 2317. Total energy = 6526.9013 kcal/mol (6511.7007 without restraints) Performing minimization step: 2318. Total energy = 6524.3134 kcal/mol (6509.1168 without restraints) Performing minimization step: 2319. Total energy = 6521.7258 kcal/mol (6506.5330 without restraints) Performing minimization step: 2320. Total energy = 6519.1386 kcal/mol (6503.9496 without restraints) Performing minimization step: 2321. Total energy = 6516.5521 kcal/mol (6501.3672 without restraints) Performing minimization step: 2322. Total energy = 6513.9664 kcal/mol (6498.7853 without restraints) Performing minimization step: 2323. Total energy = 6511.3809 kcal/mol (6496.2037 without restraints) Performing minimization step: 2324. Total energy = 6508.7963 kcal/mol (6493.6230 without restraints) Performing minimization step: 2325. Total energy = 6506.2120 kcal/mol (6491.0426 without restraints) Performing minimization step: 2326. Total energy = 6503.6281 kcal/mol (6488.4626 without restraints) Performing minimization step: 2327. Total energy = 6501.0451 kcal/mol (6485.8834 without restraints) Performing minimization step: 2328. Total energy = 6498.4625 kcal/mol (6483.3048 without restraints) Performing minimization step: 2329. Total energy = 6495.8808 kcal/mol (6480.7270 without restraints) Performing minimization step: 2330. Total energy = 6493.2996 kcal/mol (6478.1496 without restraints) Performing minimization step: 2331. Total energy = 6490.7189 kcal/mol (6475.5727 without restraints) Performing minimization step: 2332. Total energy = 6488.1385 kcal/mol (6472.9962 without restraints) Performing minimization step: 2333. Total energy = 6485.5586 kcal/mol (6470.4202 without restraints) Performing minimization step: 2334. Total energy = 6482.9797 kcal/mol (6467.8453 without restraints) Performing minimization step: 2335. Total energy = 6480.4013 kcal/mol (6465.2706 without restraints) Performing minimization step: 2336. Total energy = 6477.8236 kcal/mol (6462.6969 without restraints) Performing minimization step: 2337. Total energy = 6475.2468 kcal/mol (6460.1240 without restraints) Performing minimization step: 2338. Total energy = 6472.6705 kcal/mol (6457.5514 without restraints) Performing minimization step: 2339. Total energy = 6470.0940 kcal/mol (6454.9789 without restraints) Performing minimization step: 2340. Total energy = 6467.5187 kcal/mol (6452.4073 without restraints) Performing minimization step: 2341. Total energy = 6464.9437 kcal/mol (6449.8363 without restraints) Performing minimization step: 2342. Total energy = 6462.3695 kcal/mol (6447.2659 without restraints) Performing minimization step: 2343. Total energy = 6459.7959 kcal/mol (6444.6961 without restraints) Performing minimization step: 2344. Total energy = 6457.2230 kcal/mol (6442.1273 without restraints) Performing minimization step: 2345. Total energy = 6454.6510 kcal/mol (6439.5589 without restraints) Performing minimization step: 2346. Total energy = 6452.0793 kcal/mol (6436.9911 without restraints) Performing minimization step: 2347. Total energy = 6449.5082 kcal/mol (6434.4238 without restraints) Performing minimization step: 2348. Total energy = 6446.9374 kcal/mol (6431.8569 without restraints) Performing minimization step: 2349. Total energy = 6444.3673 kcal/mol (6429.2906 without restraints) Performing minimization step: 2350. Total energy = 6441.7977 kcal/mol (6426.7248 without restraints) Performing minimization step: 2351. Total energy = 6439.2289 kcal/mol (6424.1599 without restraints) Performing minimization step: 2352. Total energy = 6436.6606 kcal/mol (6421.5954 without restraints) Performing minimization step: 2353. Total energy = 6434.0931 kcal/mol (6419.0319 without restraints) Performing minimization step: 2354. Total energy = 6431.5264 kcal/mol (6416.4688 without restraints) Performing minimization step: 2355. Total energy = 6428.9601 kcal/mol (6413.9064 without restraints) Performing minimization step: 2356. Total energy = 6426.3942 kcal/mol (6411.3443 without restraints) Performing minimization step: 2357. Total energy = 6423.8291 kcal/mol (6408.7830 without restraints) Performing minimization step: 2358. Total energy = 6421.2643 kcal/mol (6406.2221 without restraints) Performing minimization step: 2359. Total energy = 6418.7004 kcal/mol (6403.6621 without restraints) Performing minimization step: 2360. Total energy = 6416.1371 kcal/mol (6401.1025 without restraints) Performing minimization step: 2361. Total energy = 6413.5744 kcal/mol (6398.5435 without restraints) Performing minimization step: 2362. Total energy = 6411.0122 kcal/mol (6395.9852 without restraints) Performing minimization step: 2363. Total energy = 6408.4505 kcal/mol (6393.4273 without restraints) Performing minimization step: 2364. Total energy = 6405.8896 kcal/mol (6390.8703 without restraints) Performing minimization step: 2365. Total energy = 6403.3291 kcal/mol (6388.3134 without restraints) Performing minimization step: 2366. Total energy = 6400.7693 kcal/mol (6385.7575 without restraints) Performing minimization step: 2367. Total energy = 6398.2105 kcal/mol (6383.2025 without restraints) Performing minimization step: 2368. Total energy = 6395.6515 kcal/mol (6380.6473 without restraints) Performing minimization step: 2369. Total energy = 6393.0936 kcal/mol (6378.0932 without restraints) Performing minimization step: 2370. Total energy = 6390.5363 kcal/mol (6375.5396 without restraints) Performing minimization step: 2371. Total energy = 6387.9793 kcal/mol (6372.9865 without restraints) Performing minimization step: 2372. Total energy = 6385.4226 kcal/mol (6370.4336 without restraints) Performing minimization step: 2373. Total energy = 6382.8669 kcal/mol (6367.8816 without restraints) Performing minimization step: 2374. Total energy = 6380.3120 kcal/mol (6365.3306 without restraints) Performing minimization step: 2375. Total energy = 6377.7576 kcal/mol (6362.7799 without restraints) Performing minimization step: 2376. Total energy = 6375.2042 kcal/mol (6360.2303 without restraints) Performing minimization step: 2377. Total energy = 6372.6507 kcal/mol (6357.6806 without restraints) Performing minimization step: 2378. Total energy = 6370.0981 kcal/mol (6355.1317 without restraints) Performing minimization step: 2379. Total energy = 6367.5458 kcal/mol (6352.5831 without restraints) Performing minimization step: 2380. Total energy = 6364.9943 kcal/mol (6350.0354 without restraints) Performing minimization step: 2381. Total energy = 6362.4434 kcal/mol (6347.4883 without restraints) Performing minimization step: 2382. Total energy = 6359.8932 kcal/mol (6344.9419 without restraints) Performing minimization step: 2383. Total energy = 6357.3436 kcal/mol (6342.3961 without restraints) Performing minimization step: 2384. Total energy = 6354.7948 kcal/mol (6339.8510 without restraints) Performing minimization step: 2385. Total energy = 6352.2466 kcal/mol (6337.3067 without restraints) Performing minimization step: 2386. Total energy = 6349.6990 kcal/mol (6334.7627 without restraints) Performing minimization step: 2387. Total energy = 6347.1521 kcal/mol (6332.2195 without restraints) Performing minimization step: 2388. Total energy = 6344.6056 kcal/mol (6329.6768 without restraints) Performing minimization step: 2389. Total energy = 6342.0598 kcal/mol (6327.1348 without restraints) Performing minimization step: 2390. Total energy = 6339.5142 kcal/mol (6324.5930 without restraints) Performing minimization step: 2391. Total energy = 6336.9699 kcal/mol (6322.0523 without restraints) Performing minimization step: 2392. Total energy = 6334.4263 kcal/mol (6319.5125 without restraints) Performing minimization step: 2393. Total energy = 6331.8830 kcal/mol (6316.9729 without restraints) Performing minimization step: 2394. Total energy = 6329.3403 kcal/mol (6314.4340 without restraints) Performing minimization step: 2395. Total energy = 6326.7986 kcal/mol (6311.8960 without restraints) Performing minimization step: 2396. Total energy = 6324.2569 kcal/mol (6309.3581 without restraints) Performing minimization step: 2397. Total energy = 6321.7161 kcal/mol (6306.8210 without restraints) Performing minimization step: 2398. Total energy = 6319.1763 kcal/mol (6304.2849 without restraints) Performing minimization step: 2399. Total energy = 6316.6367 kcal/mol (6301.7491 without restraints) Performing minimization step: 2400. Total energy = 6314.0978 kcal/mol (6299.2139 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 6311.5597 kcal/mol (6296.6797 without restraints) Performing minimization step: 2402. Total energy = 6309.0225 kcal/mol (6294.1461 without restraints) Performing minimization step: 2403. Total energy = 6306.4855 kcal/mol (6291.6130 without restraints) Performing minimization step: 2404. Total energy = 6303.9494 kcal/mol (6289.0804 without restraints) Performing minimization step: 2405. Total energy = 6301.4136 kcal/mol (6286.5483 without restraints) Performing minimization step: 2406. Total energy = 6298.8783 kcal/mol (6284.0168 without restraints) Performing minimization step: 2407. Total energy = 6296.3440 kcal/mol (6281.4861 without restraints) Performing minimization step: 2408. Total energy = 6293.8102 kcal/mol (6278.9560 without restraints) Performing minimization step: 2409. Total energy = 6291.2768 kcal/mol (6276.4263 without restraints) Performing minimization step: 2410. Total energy = 6288.7438 kcal/mol (6273.8971 without restraints) Performing minimization step: 2411. Total energy = 6286.2121 kcal/mol (6271.3690 without restraints) Performing minimization step: 2412. Total energy = 6283.6809 kcal/mol (6268.8416 without restraints) Performing minimization step: 2413. Total energy = 6281.1507 kcal/mol (6266.3150 without restraints) Performing minimization step: 2414. Total energy = 6278.6207 kcal/mol (6263.7887 without restraints) Performing minimization step: 2415. Total energy = 6276.0918 kcal/mol (6261.2636 without restraints) Performing minimization step: 2416. Total energy = 6273.5636 kcal/mol (6258.7391 without restraints) Performing minimization step: 2417. Total energy = 6271.0356 kcal/mol (6256.2147 without restraints) Performing minimization step: 2418. Total energy = 6268.5080 kcal/mol (6253.6909 without restraints) Performing minimization step: 2419. Total energy = 6265.9811 kcal/mol (6251.1676 without restraints) Performing minimization step: 2420. Total energy = 6263.4554 kcal/mol (6248.6457 without restraints) Performing minimization step: 2421. Total energy = 6260.9301 kcal/mol (6246.1241 without restraints) Performing minimization step: 2422. Total energy = 6258.4062 kcal/mol (6243.6038 without restraints) Performing minimization step: 2423. Total energy = 6255.8824 kcal/mol (6241.0837 without restraints) Performing minimization step: 2424. Total energy = 6253.3598 kcal/mol (6238.5648 without restraints) Performing minimization step: 2425. Total energy = 6250.8373 kcal/mol (6236.0460 without restraints) Performing minimization step: 2426. Total energy = 6248.3159 kcal/mol (6233.5284 without restraints) Performing minimization step: 2427. Total energy = 6245.7949 kcal/mol (6231.0109 without restraints) Performing minimization step: 2428. Total energy = 6243.2748 kcal/mol (6228.4944 without restraints) Performing minimization step: 2429. Total energy = 6240.7548 kcal/mol (6225.9781 without restraints) Performing minimization step: 2430. Total energy = 6238.2356 kcal/mol (6223.4626 without restraints) Performing minimization step: 2431. Total energy = 6235.7173 kcal/mol (6220.9480 without restraints) Performing minimization step: 2432. Total energy = 6233.1994 kcal/mol (6218.4338 without restraints) Performing minimization step: 2433. Total energy = 6230.6823 kcal/mol (6215.9203 without restraints) Performing minimization step: 2434. Total energy = 6228.1660 kcal/mol (6213.4077 without restraints) Performing minimization step: 2435. Total energy = 6225.6501 kcal/mol (6210.8954 without restraints) Performing minimization step: 2436. Total energy = 6223.1354 kcal/mol (6208.3845 without restraints) Performing minimization step: 2437. Total energy = 6220.6213 kcal/mol (6205.8740 without restraints) Performing minimization step: 2438. Total energy = 6218.1079 kcal/mol (6203.3643 without restraints) Performing minimization step: 2439. Total energy = 6215.5950 kcal/mol (6200.8550 without restraints) Performing minimization step: 2440. Total energy = 6213.0830 kcal/mol (6198.3466 without restraints) Performing minimization step: 2441. Total energy = 6210.5714 kcal/mol (6195.8387 without restraints) Performing minimization step: 2442. Total energy = 6208.0611 kcal/mol (6193.3320 without restraints) Performing minimization step: 2443. Total energy = 6205.5510 kcal/mol (6190.8256 without restraints) Performing minimization step: 2444. Total energy = 6203.0418 kcal/mol (6188.3200 without restraints) Performing minimization step: 2445. Total energy = 6200.5333 kcal/mol (6185.8152 without restraints) Performing minimization step: 2446. Total energy = 6198.0256 kcal/mol (6183.3114 without restraints) Performing minimization step: 2447. Total energy = 6195.5190 kcal/mol (6180.8082 without restraints) Performing minimization step: 2448. Total energy = 6193.0129 kcal/mol (6178.3057 without restraints) Performing minimization step: 2449. Total energy = 6190.5074 kcal/mol (6175.8039 without restraints) Performing minimization step: 2450. Total energy = 6188.0028 kcal/mol (6173.3030 without restraints) Performing minimization step: 2451. Total energy = 6185.4991 kcal/mol (6170.8028 without restraints) Performing minimization step: 2452. Total energy = 6182.9959 kcal/mol (6168.3032 without restraints) Performing minimization step: 2453. Total energy = 6180.4934 kcal/mol (6165.8044 without restraints) Performing minimization step: 2454. Total energy = 6177.9917 kcal/mol (6163.3063 without restraints) Performing minimization step: 2455. Total energy = 6175.4908 kcal/mol (6160.8090 without restraints) Performing minimization step: 2456. Total energy = 6172.9906 kcal/mol (6158.3124 without restraints) Performing minimization step: 2457. Total energy = 6170.4911 kcal/mol (6155.8166 without restraints) Performing minimization step: 2458. Total energy = 6167.9922 kcal/mol (6153.3214 without restraints) Performing minimization step: 2459. Total energy = 6165.4943 kcal/mol (6150.8272 without restraints) Performing minimization step: 2460. Total energy = 6162.9973 kcal/mol (6148.3336 without restraints) Performing minimization step: 2461. Total energy = 6160.5009 kcal/mol (6145.8409 without restraints) Performing minimization step: 2462. Total energy = 6158.0050 kcal/mol (6143.3486 without restraints) Performing minimization step: 2463. Total energy = 6155.5096 kcal/mol (6140.8568 without restraints) Performing minimization step: 2464. Total energy = 6153.0153 kcal/mol (6138.3662 without restraints) Performing minimization step: 2465. Total energy = 6150.5217 kcal/mol (6135.8761 without restraints) Performing minimization step: 2466. Total energy = 6148.0292 kcal/mol (6133.3872 without restraints) Performing minimization step: 2467. Total energy = 6145.5370 kcal/mol (6130.8986 without restraints) Performing minimization step: 2468. Total energy = 6143.0456 kcal/mol (6128.4109 without restraints) Performing minimization step: 2469. Total energy = 6140.5550 kcal/mol (6125.9239 without restraints) Performing minimization step: 2470. Total energy = 6138.0649 kcal/mol (6123.4374 without restraints) Performing minimization step: 2471. Total energy = 6135.5759 kcal/mol (6120.9519 without restraints) Performing minimization step: 2472. Total energy = 6133.0875 kcal/mol (6118.4672 without restraints) Performing minimization step: 2473. Total energy = 6130.6000 kcal/mol (6115.9833 without restraints) Performing minimization step: 2474. Total energy = 6128.1133 kcal/mol (6113.5002 without restraints) Performing minimization step: 2475. Total energy = 6125.6278 kcal/mol (6111.0183 without restraints) Performing minimization step: 2476. Total energy = 6123.1429 kcal/mol (6108.5369 without restraints) Performing minimization step: 2477. Total energy = 6120.6585 kcal/mol (6106.0562 without restraints) Performing minimization step: 2478. Total energy = 6118.1749 kcal/mol (6103.5762 without restraints) Performing minimization step: 2479. Total energy = 6115.6922 kcal/mol (6101.0972 without restraints) Performing minimization step: 2480. Total energy = 6113.2104 kcal/mol (6098.6188 without restraints) Performing minimization step: 2481. Total energy = 6110.7288 kcal/mol (6096.1408 without restraints) Performing minimization step: 2482. Total energy = 6108.2487 kcal/mol (6093.6643 without restraints) Performing minimization step: 2483. Total energy = 6105.7691 kcal/mol (6091.1883 without restraints) Performing minimization step: 2484. Total energy = 6103.2902 kcal/mol (6088.7129 without restraints) Performing minimization step: 2485. Total energy = 6100.8126 kcal/mol (6086.2390 without restraints) Performing minimization step: 2486. Total energy = 6098.3359 kcal/mol (6083.7659 without restraints) Performing minimization step: 2487. Total energy = 6095.8596 kcal/mol (6081.2931 without restraints) Performing minimization step: 2488. Total energy = 6093.3839 kcal/mol (6078.8210 without restraints) Performing minimization step: 2489. Total energy = 6090.9092 kcal/mol (6076.3499 without restraints) Performing minimization step: 2490. Total energy = 6088.4357 kcal/mol (6073.8799 without restraints) Performing minimization step: 2491. Total energy = 6085.9626 kcal/mol (6071.4105 without restraints) Performing minimization step: 2492. Total energy = 6083.4905 kcal/mol (6068.9419 without restraints) Performing minimization step: 2493. Total energy = 6081.0191 kcal/mol (6066.4741 without restraints) Performing minimization step: 2494. Total energy = 6078.5488 kcal/mol (6064.0072 without restraints) Performing minimization step: 2495. Total energy = 6076.0790 kcal/mol (6061.5411 without restraints) Performing minimization step: 2496. Total energy = 6073.6102 kcal/mol (6059.0758 without restraints) Performing minimization step: 2497. Total energy = 6071.1422 kcal/mol (6056.6114 without restraints) Performing minimization step: 2498. Total energy = 6068.6752 kcal/mol (6054.1479 without restraints) Performing minimization step: 2499. Total energy = 6066.2089 kcal/mol (6051.6854 without restraints) Performing minimization step: 2500. Total energy = 6063.7435 kcal/mol (6049.2235 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 6061.2789 kcal/mol (6046.7625 without restraints) Performing minimization step: 2502. Total energy = 6058.8152 kcal/mol (6044.3022 without restraints) Performing minimization step: 2503. Total energy = 6056.3523 kcal/mol (6041.8430 without restraints) Performing minimization step: 2504. Total energy = 6053.8906 kcal/mol (6039.3848 without restraints) Performing minimization step: 2505. Total energy = 6051.4294 kcal/mol (6036.9271 without restraints) Performing minimization step: 2506. Total energy = 6048.9690 kcal/mol (6034.4703 without restraints) Performing minimization step: 2507. Total energy = 6046.5096 kcal/mol (6032.0144 without restraints) Performing minimization step: 2508. Total energy = 6044.0509 kcal/mol (6029.5593 without restraints) Performing minimization step: 2509. Total energy = 6041.5934 kcal/mol (6027.1053 without restraints) Performing minimization step: 2510. Total energy = 6039.1368 kcal/mol (6024.6523 without restraints) Performing minimization step: 2511. Total energy = 6036.6810 kcal/mol (6022.2000 without restraints) Performing minimization step: 2512. Total energy = 6034.2260 kcal/mol (6019.7486 without restraints) Performing minimization step: 2513. Total energy = 6031.7718 kcal/mol (6017.2979 without restraints) Performing minimization step: 2514. Total energy = 6029.3189 kcal/mol (6014.8485 without restraints) Performing minimization step: 2515. Total energy = 6026.8664 kcal/mol (6012.3997 without restraints) Performing minimization step: 2516. Total energy = 6024.4151 kcal/mol (6009.9518 without restraints) Performing minimization step: 2517. Total energy = 6021.9645 kcal/mol (6007.5048 without restraints) Performing minimization step: 2518. Total energy = 6019.5155 kcal/mol (6005.0595 without restraints) Performing minimization step: 2519. Total energy = 6017.0673 kcal/mol (6002.6148 without restraints) Performing minimization step: 2520. Total energy = 6014.6197 kcal/mol (6000.1707 without restraints) Performing minimization step: 2521. Total energy = 6012.1730 kcal/mol (5997.7276 without restraints) Performing minimization step: 2522. Total energy = 6009.7272 kcal/mol (5995.2852 without restraints) Performing minimization step: 2523. Total energy = 6007.2824 kcal/mol (5992.8440 without restraints) Performing minimization step: 2524. Total energy = 6004.8383 kcal/mol (5990.4034 without restraints) Performing minimization step: 2525. Total energy = 6002.3952 kcal/mol (5987.9638 without restraints) Performing minimization step: 2526. Total energy = 5999.9530 kcal/mol (5985.5252 without restraints) Performing minimization step: 2527. Total energy = 5997.5118 kcal/mol (5983.0874 without restraints) Performing minimization step: 2528. Total energy = 5995.0716 kcal/mol (5980.6507 without restraints) Performing minimization step: 2529. Total energy = 5992.6321 kcal/mol (5978.2148 without restraints) Performing minimization step: 2530. Total energy = 5990.1936 kcal/mol (5975.7799 without restraints) Performing minimization step: 2531. Total energy = 5987.7563 kcal/mol (5973.3461 without restraints) Performing minimization step: 2532. Total energy = 5985.3197 kcal/mol (5970.9130 without restraints) Performing minimization step: 2533. Total energy = 5982.8843 kcal/mol (5968.4811 without restraints) Performing minimization step: 2534. Total energy = 5980.4508 kcal/mol (5966.0512 without restraints) Performing minimization step: 2535. Total energy = 5978.0171 kcal/mol (5963.6210 without restraints) Performing minimization step: 2536. Total energy = 5975.5844 kcal/mol (5961.1917 without restraints) Performing minimization step: 2537. Total energy = 5973.1530 kcal/mol (5958.7640 without restraints) Performing minimization step: 2538. Total energy = 5970.7223 kcal/mol (5956.3367 without restraints) Performing minimization step: 2539. Total energy = 5968.2927 kcal/mol (5953.9106 without restraints) Performing minimization step: 2540. Total energy = 5965.8637 kcal/mol (5951.4851 without restraints) Performing minimization step: 2541. Total energy = 5963.4361 kcal/mol (5949.0610 without restraints) Performing minimization step: 2542. Total energy = 5961.0091 kcal/mol (5946.6376 without restraints) Performing minimization step: 2543. Total energy = 5958.5832 kcal/mol (5944.2152 without restraints) Performing minimization step: 2544. Total energy = 5956.1588 kcal/mol (5941.7944 without restraints) Performing minimization step: 2545. Total energy = 5953.7350 kcal/mol (5939.3740 without restraints) Performing minimization step: 2546. Total energy = 5951.3119 kcal/mol (5936.9544 without restraints) Performing minimization step: 2547. Total energy = 5948.8899 kcal/mol (5934.5359 without restraints) Performing minimization step: 2548. Total energy = 5946.4690 kcal/mol (5932.1185 without restraints) Performing minimization step: 2549. Total energy = 5944.0490 kcal/mol (5929.7021 without restraints) Performing minimization step: 2550. Total energy = 5941.6301 kcal/mol (5927.2866 without restraints) Performing minimization step: 2551. Total energy = 5939.2121 kcal/mol (5924.8722 without restraints) Performing minimization step: 2552. Total energy = 5936.7952 kcal/mol (5922.4587 without restraints) Performing minimization step: 2553. Total energy = 5934.3794 kcal/mol (5920.0464 without restraints) Performing minimization step: 2554. Total energy = 5931.9645 kcal/mol (5917.6350 without restraints) Performing minimization step: 2555. Total energy = 5929.5506 kcal/mol (5915.2247 without restraints) Performing minimization step: 2556. Total energy = 5927.1374 kcal/mol (5912.8148 without restraints) Performing minimization step: 2557. Total energy = 5924.7255 kcal/mol (5910.4065 without restraints) Performing minimization step: 2558. Total energy = 5922.3147 kcal/mol (5907.9993 without restraints) Performing minimization step: 2559. Total energy = 5919.9053 kcal/mol (5905.5933 without restraints) Performing minimization step: 2560. Total energy = 5917.4966 kcal/mol (5903.1882 without restraints) Performing minimization step: 2561. Total energy = 5915.0890 kcal/mol (5900.7840 without restraints) Performing minimization step: 2562. Total energy = 5912.6827 kcal/mol (5898.3812 without restraints) Performing minimization step: 2563. Total energy = 5910.2773 kcal/mol (5895.9793 without restraints) Performing minimization step: 2564. Total energy = 5907.8729 kcal/mol (5893.5784 without restraints) Performing minimization step: 2565. Total energy = 5905.4695 kcal/mol (5891.1786 without restraints) Performing minimization step: 2566. Total energy = 5903.0676 kcal/mol (5888.7802 without restraints) Performing minimization step: 2567. Total energy = 5900.6664 kcal/mol (5886.3824 without restraints) Performing minimization step: 2568. Total energy = 5898.2664 kcal/mol (5883.9858 without restraints) Performing minimization step: 2569. Total energy = 5895.8675 kcal/mol (5881.5905 without restraints) Performing minimization step: 2570. Total energy = 5893.4696 kcal/mol (5879.1961 without restraints) Performing minimization step: 2571. Total energy = 5891.0725 kcal/mol (5876.8024 without restraints) Performing minimization step: 2572. Total energy = 5888.6766 kcal/mol (5874.4100 without restraints) Performing minimization step: 2573. Total energy = 5886.2822 kcal/mol (5872.0191 without restraints) Performing minimization step: 2574. Total energy = 5883.8888 kcal/mol (5869.6290 without restraints) Performing minimization step: 2575. Total energy = 5881.4958 kcal/mol (5867.2396 without restraints) Performing minimization step: 2576. Total energy = 5879.1042 kcal/mol (5864.8516 without restraints) Performing minimization step: 2577. Total energy = 5876.7140 kcal/mol (5862.4648 without restraints) Performing minimization step: 2578. Total energy = 5874.3248 kcal/mol (5860.0791 without restraints) Performing minimization step: 2579. Total energy = 5871.9366 kcal/mol (5857.6943 without restraints) Performing minimization step: 2580. Total energy = 5869.5494 kcal/mol (5855.3107 without restraints) Performing minimization step: 2581. Total energy = 5867.1633 kcal/mol (5852.9280 without restraints) Performing minimization step: 2582. Total energy = 5864.7784 kcal/mol (5850.5466 without restraints) Performing minimization step: 2583. Total energy = 5862.3948 kcal/mol (5848.1665 without restraints) Performing minimization step: 2584. Total energy = 5860.0122 kcal/mol (5845.7873 without restraints) Performing minimization step: 2585. Total energy = 5857.6312 kcal/mol (5843.4099 without restraints) Performing minimization step: 2586. Total energy = 5855.2513 kcal/mol (5841.0334 without restraints) Performing minimization step: 2587. Total energy = 5852.8722 kcal/mol (5838.6579 without restraints) Performing minimization step: 2588. Total energy = 5850.4943 kcal/mol (5836.2834 without restraints) Performing minimization step: 2589. Total energy = 5848.1176 kcal/mol (5833.9102 without restraints) Performing minimization step: 2590. Total energy = 5845.7416 kcal/mol (5831.5377 without restraints) Performing minimization step: 2591. Total energy = 5843.3674 kcal/mol (5829.1669 without restraints) Performing minimization step: 2592. Total energy = 5840.9942 kcal/mol (5826.7971 without restraints) Performing minimization step: 2593. Total energy = 5838.6223 kcal/mol (5824.4287 without restraints) Performing minimization step: 2594. Total energy = 5836.2511 kcal/mol (5822.0610 without restraints) Performing minimization step: 2595. Total energy = 5833.8810 kcal/mol (5819.6943 without restraints) Performing minimization step: 2596. Total energy = 5831.5120 kcal/mol (5817.3288 without restraints) Performing minimization step: 2597. Total energy = 5829.1444 kcal/mol (5814.9647 without restraints) Performing minimization step: 2598. Total energy = 5826.7776 kcal/mol (5812.6012 without restraints) Performing minimization step: 2599. Total energy = 5824.4124 kcal/mol (5810.2396 without restraints) Performing minimization step: 2600. Total energy = 5822.0483 kcal/mol (5807.8790 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 5819.6853 kcal/mol (5805.5195 without restraints) Performing minimization step: 2602. Total energy = 5817.3239 kcal/mol (5803.1615 without restraints) Performing minimization step: 2603. Total energy = 5814.9637 kcal/mol (5800.8046 without restraints) Performing minimization step: 2604. Total energy = 5812.6042 kcal/mol (5798.4487 without restraints) Performing minimization step: 2605. Total energy = 5810.2462 kcal/mol (5796.0943 without restraints) Performing minimization step: 2606. Total energy = 5807.8898 kcal/mol (5793.7415 without restraints) Performing minimization step: 2607. Total energy = 5805.5343 kcal/mol (5791.3892 without restraints) Performing minimization step: 2608. Total energy = 5803.1799 kcal/mol (5789.0383 without restraints) Performing minimization step: 2609. Total energy = 5800.8269 kcal/mol (5786.6887 without restraints) Performing minimization step: 2610. Total energy = 5798.4750 kcal/mol (5784.3403 without restraints) Performing minimization step: 2611. Total energy = 5796.1241 kcal/mol (5781.9929 without restraints) Performing minimization step: 2612. Total energy = 5793.7745 kcal/mol (5779.6468 without restraints) Performing minimization step: 2613. Total energy = 5791.4264 kcal/mol (5777.3023 without restraints) Performing minimization step: 2614. Total energy = 5789.0795 kcal/mol (5774.9588 without restraints) Performing minimization step: 2615. Total energy = 5786.7337 kcal/mol (5772.6163 without restraints) Performing minimization step: 2616. Total energy = 5784.3892 kcal/mol (5770.2753 without restraints) Performing minimization step: 2617. Total energy = 5782.0461 kcal/mol (5767.9355 without restraints) Performing minimization step: 2618. Total energy = 5779.7036 kcal/mol (5765.5966 without restraints) Performing minimization step: 2619. Total energy = 5777.3627 kcal/mol (5763.2592 without restraints) Performing minimization step: 2620. Total energy = 5775.0230 kcal/mol (5760.9229 without restraints) Performing minimization step: 2621. Total energy = 5772.6846 kcal/mol (5758.5879 without restraints) Performing minimization step: 2622. Total energy = 5770.3475 kcal/mol (5756.2542 without restraints) Performing minimization step: 2623. Total energy = 5768.0113 kcal/mol (5753.9216 without restraints) Performing minimization step: 2624. Total energy = 5765.6772 kcal/mol (5751.5910 without restraints) Performing minimization step: 2625. Total energy = 5763.3440 kcal/mol (5749.2613 without restraints) Performing minimization step: 2626. Total energy = 5761.0123 kcal/mol (5746.9328 without restraints) Performing minimization step: 2627. Total energy = 5758.6813 kcal/mol (5744.6052 without restraints) Performing minimization step: 2628. Total energy = 5756.3515 kcal/mol (5742.2791 without restraints) Performing minimization step: 2629. Total energy = 5754.0232 kcal/mol (5739.9542 without restraints) Performing minimization step: 2630. Total energy = 5751.6963 kcal/mol (5737.6307 without restraints) Performing minimization step: 2631. Total energy = 5749.3707 kcal/mol (5735.3086 without restraints) Performing minimization step: 2632. Total energy = 5747.0466 kcal/mol (5732.9881 without restraints) Performing minimization step: 2633. Total energy = 5744.7237 kcal/mol (5730.6684 without restraints) Performing minimization step: 2634. Total energy = 5742.4022 kcal/mol (5728.3503 without restraints) Performing minimization step: 2635. Total energy = 5740.0817 kcal/mol (5726.0333 without restraints) Performing minimization step: 2636. Total energy = 5737.7626 kcal/mol (5723.7177 without restraints) Performing minimization step: 2637. Total energy = 5735.4452 kcal/mol (5721.4037 without restraints) Performing minimization step: 2638. Total energy = 5733.1286 kcal/mol (5719.0906 without restraints) Performing minimization step: 2639. Total energy = 5730.8137 kcal/mol (5716.7791 without restraints) Performing minimization step: 2640. Total energy = 5728.4998 kcal/mol (5714.4686 without restraints) Performing minimization step: 2641. Total energy = 5726.1874 kcal/mol (5712.1597 without restraints) Performing minimization step: 2642. Total energy = 5723.8764 kcal/mol (5709.8521 without restraints) Performing minimization step: 2643. Total energy = 5721.5665 kcal/mol (5707.5457 without restraints) Performing minimization step: 2644. Total energy = 5719.2578 kcal/mol (5705.2404 without restraints) Performing minimization step: 2645. Total energy = 5716.9506 kcal/mol (5702.9367 without restraints) Performing minimization step: 2646. Total energy = 5714.6450 kcal/mol (5700.6347 without restraints) Performing minimization step: 2647. Total energy = 5712.3407 kcal/mol (5698.3336 without restraints) Performing minimization step: 2648. Total energy = 5710.0375 kcal/mol (5696.0339 without restraints) Performing minimization step: 2649. Total energy = 5707.7357 kcal/mol (5693.7355 without restraints) Performing minimization step: 2650. Total energy = 5705.4356 kcal/mol (5691.4389 without restraints) Performing minimization step: 2651. Total energy = 5703.1365 kcal/mol (5689.1432 without restraints) Performing minimization step: 2652. Total energy = 5700.8390 kcal/mol (5686.8492 without restraints) Performing minimization step: 2653. Total energy = 5698.5427 kcal/mol (5684.5563 without restraints) Performing minimization step: 2654. Total energy = 5696.2482 kcal/mol (5682.2654 without restraints) Performing minimization step: 2655. Total energy = 5693.9548 kcal/mol (5679.9753 without restraints) Performing minimization step: 2656. Total energy = 5691.6626 kcal/mol (5677.6865 without restraints) Performing minimization step: 2657. Total energy = 5689.3718 kcal/mol (5675.3991 without restraints) Performing minimization step: 2658. Total energy = 5687.0825 kcal/mol (5673.1133 without restraints) Performing minimization step: 2659. Total energy = 5684.7945 kcal/mol (5670.8287 without restraints) Performing minimization step: 2660. Total energy = 5682.5078 kcal/mol (5668.5455 without restraints) Performing minimization step: 2661. Total energy = 5680.2226 kcal/mol (5666.2637 without restraints) Performing minimization step: 2662. Total energy = 5677.9389 kcal/mol (5663.9835 without restraints) Performing minimization step: 2663. Total energy = 5675.6565 kcal/mol (5661.7043 without restraints) Performing minimization step: 2664. Total energy = 5673.3754 kcal/mol (5659.4268 without restraints) Performing minimization step: 2665. Total energy = 5671.0958 kcal/mol (5657.1507 without restraints) Performing minimization step: 2666. Total energy = 5668.8178 kcal/mol (5654.8761 without restraints) Performing minimization step: 2667. Total energy = 5666.5410 kcal/mol (5652.6027 without restraints) Performing minimization step: 2668. Total energy = 5664.2653 kcal/mol (5650.3303 without restraints) Performing minimization step: 2669. Total energy = 5661.9911 kcal/mol (5648.0596 without restraints) Performing minimization step: 2670. Total energy = 5659.7186 kcal/mol (5645.7906 without restraints) Performing minimization step: 2671. Total energy = 5657.4478 kcal/mol (5643.5232 without restraints) Performing minimization step: 2672. Total energy = 5655.1780 kcal/mol (5641.2570 without restraints) Performing minimization step: 2673. Total energy = 5652.9099 kcal/mol (5638.9922 without restraints) Performing minimization step: 2674. Total energy = 5650.6435 kcal/mol (5636.7293 without restraints) Performing minimization step: 2675. Total energy = 5648.3782 kcal/mol (5634.4673 without restraints) Performing minimization step: 2676. Total energy = 5646.1143 kcal/mol (5632.2069 without restraints) Performing minimization step: 2677. Total energy = 5643.8523 kcal/mol (5629.9483 without restraints) Performing minimization step: 2678. Total energy = 5641.5915 kcal/mol (5627.6910 without restraints) Performing minimization step: 2679. Total energy = 5639.3321 kcal/mol (5625.4350 without restraints) Performing minimization step: 2680. Total energy = 5637.0738 kcal/mol (5623.1802 without restraints) Performing minimization step: 2681. Total energy = 5634.8173 kcal/mol (5620.9270 without restraints) Performing minimization step: 2682. Total energy = 5632.5622 kcal/mol (5618.6754 without restraints) Performing minimization step: 2683. Total energy = 5630.3088 kcal/mol (5616.4254 without restraints) Performing minimization step: 2684. Total energy = 5628.0566 kcal/mol (5614.1767 without restraints) Performing minimization step: 2685. Total energy = 5625.8060 kcal/mol (5611.9295 without restraints) Performing minimization step: 2686. Total energy = 5623.5570 kcal/mol (5609.6839 without restraints) Performing minimization step: 2687. Total energy = 5621.3095 kcal/mol (5607.4398 without restraints) Performing minimization step: 2688. Total energy = 5619.0630 kcal/mol (5605.1968 without restraints) Performing minimization step: 2689. Total energy = 5616.8182 kcal/mol (5602.9553 without restraints) Performing minimization step: 2690. Total energy = 5614.5748 kcal/mol (5600.7155 without restraints) Performing minimization step: 2691. Total energy = 5612.3329 kcal/mol (5598.4770 without restraints) Performing minimization step: 2692. Total energy = 5610.0929 kcal/mol (5596.2404 without restraints) Performing minimization step: 2693. Total energy = 5607.8543 kcal/mol (5594.0053 without restraints) Performing minimization step: 2694. Total energy = 5605.6174 kcal/mol (5591.7718 without restraints) Performing minimization step: 2695. Total energy = 5603.3817 kcal/mol (5589.5396 without restraints) Performing minimization step: 2696. Total energy = 5601.1478 kcal/mol (5587.3090 without restraints) Performing minimization step: 2697. Total energy = 5598.9151 kcal/mol (5585.0797 without restraints) Performing minimization step: 2698. Total energy = 5596.6834 kcal/mol (5582.8515 without restraints) Performing minimization step: 2699. Total energy = 5594.4539 kcal/mol (5580.6255 without restraints) Performing minimization step: 2700. Total energy = 5592.2259 kcal/mol (5578.4010 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 5589.9994 kcal/mol (5576.1778 without restraints) Performing minimization step: 2702. Total energy = 5587.7744 kcal/mol (5573.9562 without restraints) Performing minimization step: 2703. Total energy = 5585.5511 kcal/mol (5571.7363 without restraints) Performing minimization step: 2704. Total energy = 5583.3293 kcal/mol (5569.5180 without restraints) Performing minimization step: 2705. Total energy = 5581.1090 kcal/mol (5567.3011 without restraints) Performing minimization step: 2706. Total energy = 5578.8902 kcal/mol (5565.0857 without restraints) Performing minimization step: 2707. Total energy = 5576.6728 kcal/mol (5562.8718 without restraints) Performing minimization step: 2708. Total energy = 5574.4572 kcal/mol (5560.6597 without restraints) Performing minimization step: 2709. Total energy = 5572.2431 kcal/mol (5558.4489 without restraints) Performing minimization step: 2710. Total energy = 5570.0304 kcal/mol (5556.2396 without restraints) Performing minimization step: 2711. Total energy = 5567.8192 kcal/mol (5554.0319 without restraints) Performing minimization step: 2712. Total energy = 5565.6096 kcal/mol (5551.8257 without restraints) Performing minimization step: 2713. Total energy = 5563.4016 kcal/mol (5549.6211 without restraints) Performing minimization step: 2714. Total energy = 5561.1950 kcal/mol (5547.4179 without restraints) Performing minimization step: 2715. Total energy = 5558.9903 kcal/mol (5545.2167 without restraints) Performing minimization step: 2716. Total energy = 5556.7865 kcal/mol (5543.0163 without restraints) Performing minimization step: 2717. Total energy = 5554.5848 kcal/mol (5540.8181 without restraints) Performing minimization step: 2718. Total energy = 5552.3846 kcal/mol (5538.6213 without restraints) Performing minimization step: 2719. Total energy = 5550.1862 kcal/mol (5536.4264 without restraints) Performing minimization step: 2720. Total energy = 5547.9892 kcal/mol (5534.2326 without restraints) Performing minimization step: 2721. Total energy = 5545.7940 kcal/mol (5532.0410 without restraints) Performing minimization step: 2722. Total energy = 5543.6003 kcal/mol (5529.8507 without restraints) Performing minimization step: 2723. Total energy = 5541.4084 kcal/mol (5527.6622 without restraints) Performing minimization step: 2724. Total energy = 5539.2177 kcal/mol (5525.4750 without restraints) Performing minimization step: 2725. Total energy = 5537.0287 kcal/mol (5523.2894 without restraints) Performing minimization step: 2726. Total energy = 5534.8415 kcal/mol (5521.1056 without restraints) Performing minimization step: 2727. Total energy = 5532.6558 kcal/mol (5518.9233 without restraints) Performing minimization step: 2728. Total energy = 5530.4716 kcal/mol (5516.7426 without restraints) Performing minimization step: 2729. Total energy = 5528.2891 kcal/mol (5514.5635 without restraints) Performing minimization step: 2730. Total energy = 5526.1081 kcal/mol (5512.3859 without restraints) Performing minimization step: 2731. Total energy = 5523.9290 kcal/mol (5510.2103 without restraints) Performing minimization step: 2732. Total energy = 5521.7515 kcal/mol (5508.0361 without restraints) Performing minimization step: 2733. Total energy = 5519.5754 kcal/mol (5505.8635 without restraints) Performing minimization step: 2734. Total energy = 5517.4010 kcal/mol (5503.6926 without restraints) Performing minimization step: 2735. Total energy = 5515.2283 kcal/mol (5501.5234 without restraints) Performing minimization step: 2736. Total energy = 5513.0575 kcal/mol (5499.3559 without restraints) Performing minimization step: 2737. Total energy = 5510.8881 kcal/mol (5497.1899 without restraints) Performing minimization step: 2738. Total energy = 5508.7202 kcal/mol (5495.0255 without restraints) Performing minimization step: 2739. Total energy = 5506.5541 kcal/mol (5492.8630 without restraints) Performing minimization step: 2740. Total energy = 5504.3896 kcal/mol (5490.7017 without restraints) Performing minimization step: 2741. Total energy = 5502.2265 kcal/mol (5488.5420 without restraints) Performing minimization step: 2742. Total energy = 5500.0651 kcal/mol (5486.3840 without restraints) Performing minimization step: 2743. Total energy = 5497.9054 kcal/mol (5484.2279 without restraints) Performing minimization step: 2744. Total energy = 5495.7476 kcal/mol (5482.0735 without restraints) Performing minimization step: 2745. Total energy = 5493.5915 kcal/mol (5479.9207 without restraints) Performing minimization step: 2746. Total energy = 5491.4369 kcal/mol (5477.7696 without restraints) Performing minimization step: 2747. Total energy = 5489.2839 kcal/mol (5475.6200 without restraints) Performing minimization step: 2748. Total energy = 5487.1324 kcal/mol (5473.4720 without restraints) Performing minimization step: 2749. Total energy = 5484.9826 kcal/mol (5471.3255 without restraints) Performing minimization step: 2750. Total energy = 5482.8344 kcal/mol (5469.1808 without restraints) Performing minimization step: 2751. Total energy = 5480.6881 kcal/mol (5467.0379 without restraints) Performing minimization step: 2752. Total energy = 5478.5433 kcal/mol (5464.8965 without restraints) Performing minimization step: 2753. Total energy = 5476.4002 kcal/mol (5462.7569 without restraints) Performing minimization step: 2754. Total energy = 5474.2585 kcal/mol (5460.6187 without restraints) Performing minimization step: 2755. Total energy = 5472.1183 kcal/mol (5458.4818 without restraints) Performing minimization step: 2756. Total energy = 5469.9801 kcal/mol (5456.3471 without restraints) Performing minimization step: 2757. Total energy = 5467.8442 kcal/mol (5454.2147 without restraints) Performing minimization step: 2758. Total energy = 5465.7095 kcal/mol (5452.0834 without restraints) Performing minimization step: 2759. Total energy = 5463.5765 kcal/mol (5449.9537 without restraints) Performing minimization step: 2760. Total energy = 5461.4453 kcal/mol (5447.8262 without restraints) Performing minimization step: 2761. Total energy = 5459.3160 kcal/mol (5445.7001 without restraints) Performing minimization step: 2762. Total energy = 5457.1882 kcal/mol (5443.5759 without restraints) Performing minimization step: 2763. Total energy = 5455.0620 kcal/mol (5441.4530 without restraints) Performing minimization step: 2764. Total energy = 5452.9374 kcal/mol (5439.3318 without restraints) Performing minimization step: 2765. Total energy = 5450.8149 kcal/mol (5437.2128 without restraints) Performing minimization step: 2766. Total energy = 5448.6937 kcal/mol (5435.0949 without restraints) Performing minimization step: 2767. Total energy = 5446.5742 kcal/mol (5432.9789 without restraints) Performing minimization step: 2768. Total energy = 5444.4566 kcal/mol (5430.8648 without restraints) Performing minimization step: 2769. Total energy = 5442.3405 kcal/mol (5428.7521 without restraints) Performing minimization step: 2770. Total energy = 5440.2259 kcal/mol (5426.6409 without restraints) Performing minimization step: 2771. Total energy = 5438.1135 kcal/mol (5424.5320 without restraints) Performing minimization step: 2772. Total energy = 5436.0026 kcal/mol (5422.4244 without restraints) Performing minimization step: 2773. Total energy = 5433.8935 kcal/mol (5420.3188 without restraints) Performing minimization step: 2774. Total energy = 5431.7862 kcal/mol (5418.2149 without restraints) Performing minimization step: 2775. Total energy = 5429.6806 kcal/mol (5416.1128 without restraints) Performing minimization step: 2776. Total energy = 5427.5767 kcal/mol (5414.0124 without restraints) Performing minimization step: 2777. Total energy = 5425.4745 kcal/mol (5411.9135 without restraints) Performing minimization step: 2778. Total energy = 5423.3739 kcal/mol (5409.8164 without restraints) Performing minimization step: 2779. Total energy = 5421.2751 kcal/mol (5407.7210 without restraints) Performing minimization step: 2780. Total energy = 5419.1780 kcal/mol (5405.6273 without restraints) Performing minimization step: 2781. Total energy = 5417.0826 kcal/mol (5403.5353 without restraints) Performing minimization step: 2782. Total energy = 5414.9889 kcal/mol (5401.4451 without restraints) Performing minimization step: 2783. Total energy = 5412.8970 kcal/mol (5399.3566 without restraints) Performing minimization step: 2784. Total energy = 5410.8066 kcal/mol (5397.2697 without restraints) Performing minimization step: 2785. Total energy = 5408.7182 kcal/mol (5395.1847 without restraints) Performing minimization step: 2786. Total energy = 5406.6319 kcal/mol (5393.1018 without restraints) Performing minimization step: 2787. Total energy = 5404.5472 kcal/mol (5391.0206 without restraints) Performing minimization step: 2788. Total energy = 5402.4642 kcal/mol (5388.9410 without restraints) Performing minimization step: 2789. Total energy = 5400.3827 kcal/mol (5386.8629 without restraints) Performing minimization step: 2790. Total energy = 5398.3030 kcal/mol (5384.7867 without restraints) Performing minimization step: 2791. Total energy = 5396.2251 kcal/mol (5382.7122 without restraints) Performing minimization step: 2792. Total energy = 5394.1489 kcal/mol (5380.6395 without restraints) Performing minimization step: 2793. Total energy = 5392.0745 kcal/mol (5378.5685 without restraints) Performing minimization step: 2794. Total energy = 5390.0025 kcal/mol (5376.5000 without restraints) Performing minimization step: 2795. Total energy = 5387.9317 kcal/mol (5374.4325 without restraints) Performing minimization step: 2796. Total energy = 5385.8624 kcal/mol (5372.3666 without restraints) Performing minimization step: 2797. Total energy = 5383.7952 kcal/mol (5370.3029 without restraints) Performing minimization step: 2798. Total energy = 5381.7293 kcal/mol (5368.2405 without restraints) Performing minimization step: 2799. Total energy = 5379.6660 kcal/mol (5366.1807 without restraints) Performing minimization step: 2800. Total energy = 5377.6041 kcal/mol (5364.1221 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 5375.5438 kcal/mol (5362.0653 without restraints) Performing minimization step: 2802. Total energy = 5373.4853 kcal/mol (5360.0102 without restraints) Performing minimization step: 2803. Total energy = 5371.4283 kcal/mol (5357.9567 without restraints) Performing minimization step: 2804. Total energy = 5369.3735 kcal/mol (5355.9053 without restraints) Performing minimization step: 2805. Total energy = 5367.3204 kcal/mol (5353.8556 without restraints) Performing minimization step: 2806. Total energy = 5365.2690 kcal/mol (5351.8076 without restraints) Performing minimization step: 2807. Total energy = 5363.2199 kcal/mol (5349.7622 without restraints) Performing minimization step: 2808. Total energy = 5361.1721 kcal/mol (5347.7176 without restraints) Performing minimization step: 2809. Total energy = 5359.1260 kcal/mol (5345.6750 without restraints) Performing minimization step: 2810. Total energy = 5357.0818 kcal/mol (5343.6342 without restraints) Performing minimization step: 2811. Total energy = 5355.0393 kcal/mol (5341.5952 without restraints) Performing minimization step: 2812. Total energy = 5352.9987 kcal/mol (5339.5581 without restraints) Performing minimization step: 2813. Total energy = 5350.9601 kcal/mol (5337.5228 without restraints) Performing minimization step: 2814. Total energy = 5348.9233 kcal/mol (5335.4895 without restraints) Performing minimization step: 2815. Total energy = 5346.8883 kcal/mol (5333.4580 without restraints) Performing minimization step: 2816. Total energy = 5344.8549 kcal/mol (5331.4280 without restraints) Performing minimization step: 2817. Total energy = 5342.8234 kcal/mol (5329.3999 without restraints) Performing minimization step: 2818. Total energy = 5340.7936 kcal/mol (5327.3735 without restraints) Performing minimization step: 2819. Total energy = 5338.7655 kcal/mol (5325.3490 without restraints) Performing minimization step: 2820. Total energy = 5336.7394 kcal/mol (5323.3262 without restraints) Performing minimization step: 2821. Total energy = 5334.7149 kcal/mol (5321.3052 without restraints) Performing minimization step: 2822. Total energy = 5332.6923 kcal/mol (5319.2861 without restraints) Performing minimization step: 2823. Total energy = 5330.6715 kcal/mol (5317.2687 without restraints) Performing minimization step: 2824. Total energy = 5328.6525 kcal/mol (5315.2531 without restraints) Performing minimization step: 2825. Total energy = 5326.6357 kcal/mol (5313.2398 without restraints) Performing minimization step: 2826. Total energy = 5324.6205 kcal/mol (5311.2280 without restraints) Performing minimization step: 2827. Total energy = 5322.6070 kcal/mol (5309.2181 without restraints) Performing minimization step: 2828. Total energy = 5320.5951 kcal/mol (5307.2095 without restraints) Performing minimization step: 2829. Total energy = 5318.5851 kcal/mol (5305.2030 without restraints) Performing minimization step: 2830. Total energy = 5316.5770 kcal/mol (5303.1983 without restraints) Performing minimization step: 2831. Total energy = 5314.5706 kcal/mol (5301.1953 without restraints) Performing minimization step: 2832. Total energy = 5312.5665 kcal/mol (5299.1947 without restraints) Performing minimization step: 2833. Total energy = 5310.5640 kcal/mol (5297.1956 without restraints) Performing minimization step: 2834. Total energy = 5308.5631 kcal/mol (5295.1982 without restraints) Performing minimization step: 2835. Total energy = 5306.5641 kcal/mol (5293.2026 without restraints) Performing minimization step: 2836. Total energy = 5304.5671 kcal/mol (5291.2090 without restraints) Performing minimization step: 2837. Total energy = 5302.5716 kcal/mol (5289.2169 without restraints) Performing minimization step: 2838. Total energy = 5300.5779 kcal/mol (5287.2268 without restraints) Performing minimization step: 2839. Total energy = 5298.5862 kcal/mol (5285.2385 without restraints) Performing minimization step: 2840. Total energy = 5296.5963 kcal/mol (5283.2520 without restraints) Performing minimization step: 2841. Total energy = 5294.6085 kcal/mol (5281.2678 without restraints) Performing minimization step: 2842. Total energy = 5292.6223 kcal/mol (5279.2850 without restraints) Performing minimization step: 2843. Total energy = 5290.6380 kcal/mol (5277.3041 without restraints) Performing minimization step: 2844. Total energy = 5288.6556 kcal/mol (5275.3252 without restraints) Performing minimization step: 2845. Total energy = 5286.6746 kcal/mol (5273.3477 without restraints) Performing minimization step: 2846. Total energy = 5284.6957 kcal/mol (5271.3722 without restraints) Performing minimization step: 2847. Total energy = 5282.7186 kcal/mol (5269.3985 without restraints) Performing minimization step: 2848. Total energy = 5280.7434 kcal/mol (5267.4267 without restraints) Performing minimization step: 2849. Total energy = 5278.7700 kcal/mol (5265.4568 without restraints) Performing minimization step: 2850. Total energy = 5276.7984 kcal/mol (5263.4886 without restraints) Performing minimization step: 2851. Total energy = 5274.8288 kcal/mol (5261.5226 without restraints) Performing minimization step: 2852. Total energy = 5272.8613 kcal/mol (5259.5584 without restraints) Performing minimization step: 2853. Total energy = 5270.8953 kcal/mol (5257.5959 without restraints) Performing minimization step: 2854. Total energy = 5268.9313 kcal/mol (5255.6354 without restraints) Performing minimization step: 2855. Total energy = 5266.9691 kcal/mol (5253.6767 without restraints) Performing minimization step: 2856. Total energy = 5265.0087 kcal/mol (5251.7197 without restraints) Performing minimization step: 2857. Total energy = 5263.0501 kcal/mol (5249.7646 without restraints) Performing minimization step: 2858. Total energy = 5261.0933 kcal/mol (5247.8112 without restraints) Performing minimization step: 2859. Total energy = 5259.1384 kcal/mol (5245.8597 without restraints) Performing minimization step: 2860. Total energy = 5257.1855 kcal/mol (5243.9103 without restraints) Performing minimization step: 2861. Total energy = 5255.2340 kcal/mol (5241.9623 without restraints) Performing minimization step: 2862. Total energy = 5253.2849 kcal/mol (5240.0166 without restraints) Performing minimization step: 2863. Total energy = 5251.3375 kcal/mol (5238.0727 without restraints) Performing minimization step: 2864. Total energy = 5249.3921 kcal/mol (5236.1308 without restraints) Performing minimization step: 2865. Total energy = 5247.4485 kcal/mol (5234.1906 without restraints) Performing minimization step: 2866. Total energy = 5245.5068 kcal/mol (5232.2523 without restraints) Performing minimization step: 2867. Total energy = 5243.5665 kcal/mol (5230.3156 without restraints) Performing minimization step: 2868. Total energy = 5241.6287 kcal/mol (5228.3812 without restraints) Performing minimization step: 2869. Total energy = 5239.6926 kcal/mol (5226.4485 without restraints) Performing minimization step: 2870. Total energy = 5237.7580 kcal/mol (5224.5174 without restraints) Performing minimization step: 2871. Total energy = 5235.8256 kcal/mol (5222.5884 without restraints) Performing minimization step: 2872. Total energy = 5233.8948 kcal/mol (5220.6610 without restraints) Performing minimization step: 2873. Total energy = 5231.9658 kcal/mol (5218.7355 without restraints) Performing minimization step: 2874. Total energy = 5230.0390 kcal/mol (5216.8122 without restraints) Performing minimization step: 2875. Total energy = 5228.1140 kcal/mol (5214.8907 without restraints) Performing minimization step: 2876. Total energy = 5226.1908 kcal/mol (5212.9710 without restraints) Performing minimization step: 2877. Total energy = 5224.2693 kcal/mol (5211.0529 without restraints) Performing minimization step: 2878. Total energy = 5222.3497 kcal/mol (5209.1367 without restraints) Performing minimization step: 2879. Total energy = 5220.4321 kcal/mol (5207.2226 without restraints) Performing minimization step: 2880. Total energy = 5218.5164 kcal/mol (5205.3104 without restraints) Performing minimization step: 2881. Total energy = 5216.6024 kcal/mol (5203.3998 without restraints) Performing minimization step: 2882. Total energy = 5214.6903 kcal/mol (5201.4913 without restraints) Performing minimization step: 2883. Total energy = 5212.7802 kcal/mol (5199.5847 without restraints) Performing minimization step: 2884. Total energy = 5210.8719 kcal/mol (5197.6797 without restraints) Performing minimization step: 2885. Total energy = 5208.9656 kcal/mol (5195.7769 without restraints) Performing minimization step: 2886. Total energy = 5207.0609 kcal/mol (5193.8757 without restraints) Performing minimization step: 2887. Total energy = 5205.1581 kcal/mol (5191.9763 without restraints) Performing minimization step: 2888. Total energy = 5203.2571 kcal/mol (5190.0788 without restraints) Performing minimization step: 2889. Total energy = 5201.3580 kcal/mol (5188.1832 without restraints) Performing minimization step: 2890. Total energy = 5199.4610 kcal/mol (5186.2897 without restraints) Performing minimization step: 2891. Total energy = 5197.5657 kcal/mol (5184.3977 without restraints) Performing minimization step: 2892. Total energy = 5195.6719 kcal/mol (5182.5073 without restraints) Performing minimization step: 2893. Total energy = 5193.7801 kcal/mol (5180.6192 without restraints) Performing minimization step: 2894. Total energy = 5191.8907 kcal/mol (5178.7333 without restraints) Performing minimization step: 2895. Total energy = 5190.0028 kcal/mol (5176.8486 without restraints) Performing minimization step: 2896. Total energy = 5188.1171 kcal/mol (5174.9665 without restraints) Performing minimization step: 2897. Total energy = 5186.2329 kcal/mol (5173.0858 without restraints) Performing minimization step: 2898. Total energy = 5184.3510 kcal/mol (5171.2073 without restraints) Performing minimization step: 2899. Total energy = 5182.4710 kcal/mol (5169.3308 without restraints) Performing minimization step: 2900. Total energy = 5180.5926 kcal/mol (5167.4559 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 5178.7160 kcal/mol (5165.5828 without restraints) Performing minimization step: 2902. Total energy = 5176.8414 kcal/mol (5163.7116 without restraints) Performing minimization step: 2903. Total energy = 5174.9686 kcal/mol (5161.8423 without restraints) Performing minimization step: 2904. Total energy = 5173.0976 kcal/mol (5159.9748 without restraints) Performing minimization step: 2905. Total energy = 5171.2285 kcal/mol (5158.1091 without restraints) Performing minimization step: 2906. Total energy = 5169.3612 kcal/mol (5156.2454 without restraints) Performing minimization step: 2907. Total energy = 5167.4961 kcal/mol (5154.3838 without restraints) Performing minimization step: 2908. Total energy = 5165.6330 kcal/mol (5152.5241 without restraints) Performing minimization step: 2909. Total energy = 5163.7714 kcal/mol (5150.6660 without restraints) Performing minimization step: 2910. Total energy = 5161.9116 kcal/mol (5148.8097 without restraints) Performing minimization step: 2911. Total energy = 5160.0540 kcal/mol (5146.9555 without restraints) Performing minimization step: 2912. Total energy = 5158.1985 kcal/mol (5145.1035 without restraints) Performing minimization step: 2913. Total energy = 5156.3443 kcal/mol (5143.2527 without restraints) Performing minimization step: 2914. Total energy = 5154.4919 kcal/mol (5141.4037 without restraints) Performing minimization step: 2915. Total energy = 5152.6415 kcal/mol (5139.5569 without restraints) Performing minimization step: 2916. Total energy = 5150.7928 kcal/mol (5137.7117 without restraints) Performing minimization step: 2917. Total energy = 5148.9463 kcal/mol (5135.8687 without restraints) Performing minimization step: 2918. Total energy = 5147.1019 kcal/mol (5134.0279 without restraints) Performing minimization step: 2919. Total energy = 5145.2593 kcal/mol (5132.1886 without restraints) Performing minimization step: 2920. Total energy = 5143.4184 kcal/mol (5130.3512 without restraints) Performing minimization step: 2921. Total energy = 5141.5792 kcal/mol (5128.5155 without restraints) Performing minimization step: 2922. Total energy = 5139.7422 kcal/mol (5126.6822 without restraints) Performing minimization step: 2923. Total energy = 5137.9072 kcal/mol (5124.8505 without restraints) Performing minimization step: 2924. Total energy = 5136.0738 kcal/mol (5123.0205 without restraints) Performing minimization step: 2925. Total energy = 5134.2425 kcal/mol (5121.1927 without restraints) Performing minimization step: 2926. Total energy = 5132.4128 kcal/mol (5119.3665 without restraints) Performing minimization step: 2927. Total energy = 5130.5852 kcal/mol (5117.5426 without restraints) Performing minimization step: 2928. Total energy = 5128.7601 kcal/mol (5115.7207 without restraints) Performing minimization step: 2929. Total energy = 5126.9361 kcal/mol (5113.9002 without restraints) Performing minimization step: 2930. Total energy = 5125.1141 kcal/mol (5112.0818 without restraints) Performing minimization step: 2931. Total energy = 5123.2940 kcal/mol (5110.2651 without restraints) Performing minimization step: 2932. Total energy = 5121.4756 kcal/mol (5108.4502 without restraints) Performing minimization step: 2933. Total energy = 5119.6597 kcal/mol (5106.6377 without restraints) Performing minimization step: 2934. Total energy = 5117.8454 kcal/mol (5104.8269 without restraints) Performing minimization step: 2935. Total energy = 5116.0326 kcal/mol (5103.0176 without restraints) Performing minimization step: 2936. Total energy = 5114.2217 kcal/mol (5101.2103 without restraints) Performing minimization step: 2937. Total energy = 5112.4127 kcal/mol (5099.4047 without restraints) Performing minimization step: 2938. Total energy = 5110.6064 kcal/mol (5097.6020 without restraints) Performing minimization step: 2939. Total energy = 5108.8015 kcal/mol (5095.8005 without restraints) Performing minimization step: 2940. Total energy = 5106.9983 kcal/mol (5094.0008 without restraints) Performing minimization step: 2941. Total energy = 5105.1970 kcal/mol (5092.2030 without restraints) Performing minimization step: 2942. Total energy = 5103.3973 kcal/mol (5090.4065 without restraints) Performing minimization step: 2943. Total energy = 5101.5993 kcal/mol (5088.6122 without restraints) Performing minimization step: 2944. Total energy = 5099.8035 kcal/mol (5086.8199 without restraints) Performing minimization step: 2945. Total energy = 5098.0099 kcal/mol (5085.0298 without restraints) Performing minimization step: 2946. Total energy = 5096.2179 kcal/mol (5083.2414 without restraints) Performing minimization step: 2947. Total energy = 5094.4282 kcal/mol (5081.4551 without restraints) Performing minimization step: 2948. Total energy = 5092.6399 kcal/mol (5079.6703 without restraints) Performing minimization step: 2949. Total energy = 5090.8535 kcal/mol (5077.8873 without restraints) Performing minimization step: 2950. Total energy = 5089.0687 kcal/mol (5076.1060 without restraints) Performing minimization step: 2951. Total energy = 5087.2859 kcal/mol (5074.3267 without restraints) Performing minimization step: 2952. Total energy = 5085.5053 kcal/mol (5072.5495 without restraints) Performing minimization step: 2953. Total energy = 5083.7264 kcal/mol (5070.7742 without restraints) Performing minimization step: 2954. Total energy = 5081.9496 kcal/mol (5069.0009 without restraints) Performing minimization step: 2955. Total energy = 5080.1745 kcal/mol (5067.2293 without restraints) Performing minimization step: 2956. Total energy = 5078.4012 kcal/mol (5065.4596 without restraints) Performing minimization step: 2957. Total energy = 5076.6298 kcal/mol (5063.6916 without restraints) Performing minimization step: 2958. Total energy = 5074.8603 kcal/mol (5061.9256 without restraints) Performing minimization step: 2959. Total energy = 5073.0926 kcal/mol (5060.1614 without restraints) Performing minimization step: 2960. Total energy = 5071.3268 kcal/mol (5058.3991 without restraints) Performing minimization step: 2961. Total energy = 5069.5628 kcal/mol (5056.6386 without restraints) Performing minimization step: 2962. Total energy = 5067.8015 kcal/mol (5054.8808 without restraints) Performing minimization step: 2963. Total energy = 5066.0413 kcal/mol (5053.1241 without restraints) Performing minimization step: 2964. Total energy = 5064.2830 kcal/mol (5051.3692 without restraints) Performing minimization step: 2965. Total energy = 5062.5265 kcal/mol (5049.6163 without restraints) Performing minimization step: 2966. Total energy = 5060.7722 kcal/mol (5047.8656 without restraints) Performing minimization step: 2967. Total energy = 5059.0202 kcal/mol (5046.1170 without restraints) Performing minimization step: 2968. Total energy = 5057.2694 kcal/mol (5044.3697 without restraints) Performing minimization step: 2969. Total energy = 5055.5204 kcal/mol (5042.6242 without restraints) Performing minimization step: 2970. Total energy = 5053.7737 kcal/mol (5040.8812 without restraints) Performing minimization step: 2971. Total energy = 5052.0288 kcal/mol (5039.1397 without restraints) Performing minimization step: 2972. Total energy = 5050.2857 kcal/mol (5037.4002 without restraints) Performing minimization step: 2973. Total energy = 5048.5447 kcal/mol (5035.6624 without restraints) Performing minimization step: 2974. Total energy = 5046.8048 kcal/mol (5033.9261 without restraints) Performing minimization step: 2975. Total energy = 5045.0671 kcal/mol (5032.1918 without restraints) Performing minimization step: 2976. Total energy = 5043.3312 kcal/mol (5030.4594 without restraints) Performing minimization step: 2977. Total energy = 5041.5972 kcal/mol (5028.7291 without restraints) Performing minimization step: 2978. Total energy = 5039.8654 kcal/mol (5027.0007 without restraints) Performing minimization step: 2979. Total energy = 5038.1351 kcal/mol (5025.2739 without restraints) Performing minimization step: 2980. Total energy = 5036.4071 kcal/mol (5023.5494 without restraints) Performing minimization step: 2981. Total energy = 5034.6805 kcal/mol (5021.8263 without restraints) Performing minimization step: 2982. Total energy = 5032.9558 kcal/mol (5020.1051 without restraints) Performing minimization step: 2983. Total energy = 5031.2330 kcal/mol (5018.3858 without restraints) Performing minimization step: 2984. Total energy = 5029.5117 kcal/mol (5016.6680 without restraints) Performing minimization step: 2985. Total energy = 5027.7928 kcal/mol (5014.9526 without restraints) Performing minimization step: 2986. Total energy = 5026.0756 kcal/mol (5013.2389 without restraints) Performing minimization step: 2987. Total energy = 5024.3602 kcal/mol (5011.5272 without restraints) Performing minimization step: 2988. Total energy = 5022.6465 kcal/mol (5009.8167 without restraints) Performing minimization step: 2989. Total energy = 5020.9349 kcal/mol (5008.1087 without restraints) Performing minimization step: 2990. Total energy = 5019.2249 kcal/mol (5006.4022 without restraints) Performing minimization step: 2991. Total energy = 5017.5171 kcal/mol (5004.6979 without restraints) Performing minimization step: 2992. Total energy = 5015.8106 kcal/mol (5002.9950 without restraints) Performing minimization step: 2993. Total energy = 5014.1066 kcal/mol (5001.2944 without restraints) Performing minimization step: 2994. Total energy = 5012.4043 kcal/mol (4999.5957 without restraints) Performing minimization step: 2995. Total energy = 5010.7036 kcal/mol (4997.8986 without restraints) Performing minimization step: 2996. Total energy = 5009.0050 kcal/mol (4996.2034 without restraints) Performing minimization step: 2997. Total energy = 5007.3082 kcal/mol (4994.5103 without restraints) Performing minimization step: 2998. Total energy = 5005.6134 kcal/mol (4992.8189 without restraints) Performing minimization step: 2999. Total energy = 5003.9203 kcal/mol (4991.1293 without restraints) Performing minimization step: 3000. Total energy = 5002.2290 kcal/mol (4989.4414 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 5000.5395 kcal/mol (4987.7554 without restraints) Performing minimization step: 3002. Total energy = 4998.8518 kcal/mol (4986.0713 without restraints) Performing minimization step: 3003. Total energy = 4997.1660 kcal/mol (4984.3890 without restraints) Performing minimization step: 3004. Total energy = 4995.4823 kcal/mol (4982.7085 without restraints) Performing minimization step: 3005. Total energy = 4993.7999 kcal/mol (4981.0300 without restraints) Performing minimization step: 3006. Total energy = 4992.1197 kcal/mol (4979.3532 without restraints) Performing minimization step: 3007. Total energy = 4990.4409 kcal/mol (4977.6780 without restraints) Performing minimization step: 3008. Total energy = 4988.7644 kcal/mol (4976.0050 without restraints) Performing minimization step: 3009. Total energy = 4987.0897 kcal/mol (4974.3338 without restraints) Performing minimization step: 3010. Total energy = 4985.4169 kcal/mol (4972.6645 without restraints) Performing minimization step: 3011. Total energy = 4983.7459 kcal/mol (4970.9970 without restraints) Performing minimization step: 3012. Total energy = 4982.0766 kcal/mol (4969.3312 without restraints) Performing minimization step: 3013. Total energy = 4980.4092 kcal/mol (4967.6674 without restraints) Performing minimization step: 3014. Total energy = 4978.7439 kcal/mol (4966.0056 without restraints) Performing minimization step: 3015. Total energy = 4977.0804 kcal/mol (4964.3456 without restraints) Performing minimization step: 3016. Total energy = 4975.4188 kcal/mol (4962.6875 without restraints) Performing minimization step: 3017. Total energy = 4973.7588 kcal/mol (4961.0310 without restraints) Performing minimization step: 3018. Total energy = 4972.1006 kcal/mol (4959.3764 without restraints) Performing minimization step: 3019. Total energy = 4970.4448 kcal/mol (4957.7242 without restraints) Performing minimization step: 3020. Total energy = 4968.7904 kcal/mol (4956.0732 without restraints) Performing minimization step: 3021. Total energy = 4967.1377 kcal/mol (4954.4241 without restraints) Performing minimization step: 3022. Total energy = 4965.4869 kcal/mol (4952.7767 without restraints) Performing minimization step: 3023. Total energy = 4963.8378 kcal/mol (4951.1312 without restraints) Performing minimization step: 3024. Total energy = 4962.1908 kcal/mol (4949.4877 without restraints) Performing minimization step: 3025. Total energy = 4960.5461 kcal/mol (4947.8465 without restraints) Performing minimization step: 3026. Total energy = 4958.9026 kcal/mol (4946.2065 without restraints) Performing minimization step: 3027. Total energy = 4957.2608 kcal/mol (4944.5683 without restraints) Performing minimization step: 3028. Total energy = 4955.6209 kcal/mol (4942.9319 without restraints) Performing minimization step: 3029. Total energy = 4953.9829 kcal/mol (4941.2975 without restraints) Performing minimization step: 3030. Total energy = 4952.3467 kcal/mol (4939.6647 without restraints) Performing minimization step: 3031. Total energy = 4950.7122 kcal/mol (4938.0338 without restraints) Performing minimization step: 3032. Total energy = 4949.0796 kcal/mol (4936.4047 without restraints) Performing minimization step: 3033. Total energy = 4947.4488 kcal/mol (4934.7774 without restraints) Performing minimization step: 3034. Total energy = 4945.8200 kcal/mol (4933.1521 without restraints) Performing minimization step: 3035. Total energy = 4944.1926 kcal/mol (4931.5282 without restraints) Performing minimization step: 3036. Total energy = 4942.5674 kcal/mol (4929.9065 without restraints) Performing minimization step: 3037. Total energy = 4940.9438 kcal/mol (4928.2866 without restraints) Performing minimization step: 3038. Total energy = 4939.3221 kcal/mol (4926.6684 without restraints) Performing minimization step: 3039. Total energy = 4937.7023 kcal/mol (4925.0521 without restraints) Performing minimization step: 3040. Total energy = 4936.0844 kcal/mol (4923.4377 without restraints) Performing minimization step: 3041. Total energy = 4934.4684 kcal/mol (4921.8252 without restraints) Performing minimization step: 3042. Total energy = 4932.8540 kcal/mol (4920.2145 without restraints) Performing minimization step: 3043. Total energy = 4931.2415 kcal/mol (4918.6054 without restraints) Performing minimization step: 3044. Total energy = 4929.6306 kcal/mol (4916.9980 without restraints) Performing minimization step: 3045. Total energy = 4928.0216 kcal/mol (4915.3925 without restraints) Performing minimization step: 3046. Total energy = 4926.4142 kcal/mol (4913.7887 without restraints) Performing minimization step: 3047. Total energy = 4924.8088 kcal/mol (4912.1868 without restraints) Performing minimization step: 3048. Total energy = 4923.2052 kcal/mol (4910.5867 without restraints) Performing minimization step: 3049. Total energy = 4921.6033 kcal/mol (4908.9884 without restraints) Performing minimization step: 3050. Total energy = 4920.0034 kcal/mol (4907.3921 without restraints) Performing minimization step: 3051. Total energy = 4918.4052 kcal/mol (4905.7974 without restraints) Performing minimization step: 3052. Total energy = 4916.8088 kcal/mol (4904.2045 without restraints) Performing minimization step: 3053. Total energy = 4915.2147 kcal/mol (4902.6139 without restraints) Performing minimization step: 3054. Total energy = 4913.6221 kcal/mol (4901.0249 without restraints) Performing minimization step: 3055. Total energy = 4912.0312 kcal/mol (4899.4375 without restraints) Performing minimization step: 3056. Total energy = 4910.4419 kcal/mol (4897.8518 without restraints) Performing minimization step: 3057. Total energy = 4908.8546 kcal/mol (4896.2679 without restraints) Performing minimization step: 3058. Total energy = 4907.2689 kcal/mol (4894.6858 without restraints) Performing minimization step: 3059. Total energy = 4905.6851 kcal/mol (4893.1056 without restraints) Performing minimization step: 3060. Total energy = 4904.1030 kcal/mol (4891.5270 without restraints) Performing minimization step: 3061. Total energy = 4902.5226 kcal/mol (4889.9502 without restraints) Performing minimization step: 3062. Total energy = 4900.9441 kcal/mol (4888.3752 without restraints) Performing minimization step: 3063. Total energy = 4899.3674 kcal/mol (4886.8020 without restraints) Performing minimization step: 3064. Total energy = 4897.7923 kcal/mol (4885.2305 without restraints) Performing minimization step: 3065. Total energy = 4896.2192 kcal/mol (4883.6609 without restraints) Performing minimization step: 3066. Total energy = 4894.6483 kcal/mol (4882.0935 without restraints) Performing minimization step: 3067. Total energy = 4893.0787 kcal/mol (4880.5275 without restraints) Performing minimization step: 3068. Total energy = 4891.5107 kcal/mol (4878.9631 without restraints) Performing minimization step: 3069. Total energy = 4889.9449 kcal/mol (4877.4008 without restraints) Performing minimization step: 3070. Total energy = 4888.3806 kcal/mol (4875.8400 without restraints) Performing minimization step: 3071. Total energy = 4886.8181 kcal/mol (4874.2810 without restraints) Performing minimization step: 3072. Total energy = 4885.2573 kcal/mol (4872.7238 without restraints) Performing minimization step: 3073. Total energy = 4883.6982 kcal/mol (4871.1681 without restraints) Performing minimization step: 3074. Total energy = 4882.1406 kcal/mol (4869.6142 without restraints) Performing minimization step: 3075. Total energy = 4880.5854 kcal/mol (4868.0625 without restraints) Performing minimization step: 3076. Total energy = 4879.0318 kcal/mol (4866.5124 without restraints) Performing minimization step: 3077. Total energy = 4877.4798 kcal/mol (4864.9640 without restraints) Performing minimization step: 3078. Total energy = 4875.9297 kcal/mol (4863.4174 without restraints) Performing minimization step: 3079. Total energy = 4874.3812 kcal/mol (4861.8725 without restraints) Performing minimization step: 3080. Total energy = 4872.8345 kcal/mol (4860.3293 without restraints) Performing minimization step: 3081. Total energy = 4871.2898 kcal/mol (4858.7882 without restraints) Performing minimization step: 3082. Total energy = 4869.7466 kcal/mol (4857.2486 without restraints) Performing minimization step: 3083. Total energy = 4868.2053 kcal/mol (4855.7107 without restraints) Performing minimization step: 3084. Total energy = 4866.6657 kcal/mol (4854.1747 without restraints) Performing minimization step: 3085. Total energy = 4865.1278 kcal/mol (4852.6404 without restraints) Performing minimization step: 3086. Total energy = 4863.5917 kcal/mol (4851.1079 without restraints) Performing minimization step: 3087. Total energy = 4862.0573 kcal/mol (4849.5770 without restraints) Performing minimization step: 3088. Total energy = 4860.5247 kcal/mol (4848.0479 without restraints) Performing minimization step: 3089. Total energy = 4858.9940 kcal/mol (4846.5208 without restraints) Performing minimization step: 3090. Total energy = 4857.4652 kcal/mol (4844.9955 without restraints) Performing minimization step: 3091. Total energy = 4855.9378 kcal/mol (4843.4717 without restraints) Performing minimization step: 3092. Total energy = 4854.4123 kcal/mol (4841.9497 without restraints) Performing minimization step: 3093. Total energy = 4852.8887 kcal/mol (4840.4296 without restraints) Performing minimization step: 3094. Total energy = 4851.3665 kcal/mol (4838.9110 without restraints) Performing minimization step: 3095. Total energy = 4849.8460 kcal/mol (4837.3941 without restraints) Performing minimization step: 3096. Total energy = 4848.3278 kcal/mol (4835.8794 without restraints) Performing minimization step: 3097. Total energy = 4846.8108 kcal/mol (4834.3662 without restraints) Performing minimization step: 3098. Total energy = 4845.2961 kcal/mol (4832.8548 without restraints) Performing minimization step: 3099. Total energy = 4843.7826 kcal/mol (4831.3448 without restraints) Performing minimization step: 3100. Total energy = 4842.2708 kcal/mol (4829.8367 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 4840.7611 kcal/mol (4828.3305 without restraints) Performing minimization step: 3102. Total energy = 4839.2529 kcal/mol (4826.8258 without restraints) Performing minimization step: 3103. Total energy = 4837.7464 kcal/mol (4825.3229 without restraints) Performing minimization step: 3104. Total energy = 4836.2418 kcal/mol (4823.8219 without restraints) Performing minimization step: 3105. Total energy = 4834.7387 kcal/mol (4822.3223 without restraints) Performing minimization step: 3106. Total energy = 4833.2377 kcal/mol (4820.8249 without restraints) Performing minimization step: 3107. Total energy = 4831.7380 kcal/mol (4819.3287 without restraints) Performing minimization step: 3108. Total energy = 4830.2399 kcal/mol (4817.8342 without restraints) Performing minimization step: 3109. Total energy = 4828.7439 kcal/mol (4816.3418 without restraints) Performing minimization step: 3110. Total energy = 4827.2499 kcal/mol (4814.8513 without restraints) Performing minimization step: 3111. Total energy = 4825.7569 kcal/mol (4813.3619 without restraints) Performing minimization step: 3112. Total energy = 4824.2659 kcal/mol (4811.8744 without restraints) Performing minimization step: 3113. Total energy = 4822.7770 kcal/mol (4810.3891 without restraints) Performing minimization step: 3114. Total energy = 4821.2894 kcal/mol (4808.9050 without restraints) Performing minimization step: 3115. Total energy = 4819.8040 kcal/mol (4807.4231 without restraints) Performing minimization step: 3116. Total energy = 4818.3198 kcal/mol (4805.9425 without restraints) Performing minimization step: 3117. Total energy = 4816.8377 kcal/mol (4804.4640 without restraints) Performing minimization step: 3118. Total energy = 4815.3572 kcal/mol (4802.9871 without restraints) Performing minimization step: 3119. Total energy = 4813.8780 kcal/mol (4801.5113 without restraints) Performing minimization step: 3120. Total energy = 4812.4005 kcal/mol (4800.0375 without restraints) Performing minimization step: 3121. Total energy = 4810.9248 kcal/mol (4798.5653 without restraints) Performing minimization step: 3122. Total energy = 4809.4510 kcal/mol (4797.0951 without restraints) Performing minimization step: 3123. Total energy = 4807.9789 kcal/mol (4795.6266 without restraints) Performing minimization step: 3124. Total energy = 4806.5083 kcal/mol (4794.1595 without restraints) Performing minimization step: 3125. Total energy = 4805.0395 kcal/mol (4792.6943 without restraints) Performing minimization step: 3126. Total energy = 4803.5723 kcal/mol (4791.2306 without restraints) Performing minimization step: 3127. Total energy = 4802.1068 kcal/mol (4789.7687 without restraints) Performing minimization step: 3128. Total energy = 4800.6431 kcal/mol (4788.3086 without restraints) Performing minimization step: 3129. Total energy = 4799.1809 kcal/mol (4786.8500 without restraints) Performing minimization step: 3130. Total energy = 4797.7209 kcal/mol (4785.3935 without restraints) Performing minimization step: 3131. Total energy = 4796.2622 kcal/mol (4783.9383 without restraints) Performing minimization step: 3132. Total energy = 4794.8051 kcal/mol (4782.4848 without restraints) Performing minimization step: 3133. Total energy = 4793.3504 kcal/mol (4781.0338 without restraints) Performing minimization step: 3134. Total energy = 4791.8969 kcal/mol (4779.5838 without restraints) Performing minimization step: 3135. Total energy = 4790.4449 kcal/mol (4778.1353 without restraints) Performing minimization step: 3136. Total energy = 4788.9945 kcal/mol (4776.6885 without restraints) Performing minimization step: 3137. Total energy = 4787.5454 kcal/mol (4775.2430 without restraints) Performing minimization step: 3138. Total energy = 4786.0986 kcal/mol (4773.7997 without restraints) Performing minimization step: 3139. Total energy = 4784.6535 kcal/mol (4772.3583 without restraints) Performing minimization step: 3140. Total energy = 4783.2100 kcal/mol (4770.9183 without restraints) Performing minimization step: 3141. Total energy = 4781.7680 kcal/mol (4769.4798 without restraints) Performing minimization step: 3142. Total energy = 4780.3276 kcal/mol (4768.0430 without restraints) Performing minimization step: 3143. Total energy = 4778.8890 kcal/mol (4766.6080 without restraints) Performing minimization step: 3144. Total energy = 4777.4522 kcal/mol (4765.1747 without restraints) Performing minimization step: 3145. Total energy = 4776.0168 kcal/mol (4763.7429 without restraints) Performing minimization step: 3146. Total energy = 4774.5832 kcal/mol (4762.3129 without restraints) Performing minimization step: 3147. Total energy = 4773.1515 kcal/mol (4760.8848 without restraints) Performing minimization step: 3148. Total energy = 4771.7213 kcal/mol (4759.4581 without restraints) Performing minimization step: 3149. Total energy = 4770.2929 kcal/mol (4758.0333 without restraints) Performing minimization step: 3150. Total energy = 4768.8658 kcal/mol (4756.6098 without restraints) Performing minimization step: 3151. Total energy = 4767.4404 kcal/mol (4755.1879 without restraints) Performing minimization step: 3152. Total energy = 4766.0165 kcal/mol (4753.7676 without restraints) Performing minimization step: 3153. Total energy = 4764.5942 kcal/mol (4752.3488 without restraints) Performing minimization step: 3154. Total energy = 4763.1736 kcal/mol (4750.9319 without restraints) Performing minimization step: 3155. Total energy = 4761.7548 kcal/mol (4749.5166 without restraints) Performing minimization step: 3156. Total energy = 4760.3374 kcal/mol (4748.1028 without restraints) Performing minimization step: 3157. Total energy = 4758.9216 kcal/mol (4746.6906 without restraints) Performing minimization step: 3158. Total energy = 4757.5080 kcal/mol (4745.2806 without restraints) Performing minimization step: 3159. Total energy = 4756.0955 kcal/mol (4743.8716 without restraints) Performing minimization step: 3160. Total energy = 4754.6846 kcal/mol (4742.4642 without restraints) Performing minimization step: 3161. Total energy = 4753.2755 kcal/mol (4741.0588 without restraints) Performing minimization step: 3162. Total energy = 4751.8678 kcal/mol (4739.6547 without restraints) Performing minimization step: 3163. Total energy = 4750.4622 kcal/mol (4738.2526 without restraints) Performing minimization step: 3164. Total energy = 4749.0580 kcal/mol (4736.8520 without restraints) Performing minimization step: 3165. Total energy = 4747.6557 kcal/mol (4735.4533 without restraints) Performing minimization step: 3166. Total energy = 4746.2544 kcal/mol (4734.0555 without restraints) Performing minimization step: 3167. Total energy = 4744.8553 kcal/mol (4732.6601 without restraints) Performing minimization step: 3168. Total energy = 4743.4582 kcal/mol (4731.2664 without restraints) Performing minimization step: 3169. Total energy = 4742.0623 kcal/mol (4729.8742 without restraints) Performing minimization step: 3170. Total energy = 4740.6679 kcal/mol (4728.4833 without restraints) Performing minimization step: 3171. Total energy = 4739.2752 kcal/mol (4727.0942 without restraints) Performing minimization step: 3172. Total energy = 4737.8839 kcal/mol (4725.7065 without restraints) Performing minimization step: 3173. Total energy = 4736.4943 kcal/mol (4724.3204 without restraints) Performing minimization step: 3174. Total energy = 4735.1064 kcal/mol (4722.9363 without restraints) Performing minimization step: 3175. Total energy = 4733.7203 kcal/mol (4721.5536 without restraints) Performing minimization step: 3176. Total energy = 4732.3357 kcal/mol (4720.1725 without restraints) Performing minimization step: 3177. Total energy = 4730.9524 kcal/mol (4718.7928 without restraints) Performing minimization step: 3178. Total energy = 4729.5708 kcal/mol (4717.4148 without restraints) Performing minimization step: 3179. Total energy = 4728.1912 kcal/mol (4716.0389 without restraints) Performing minimization step: 3180. Total energy = 4726.8127 kcal/mol (4714.6639 without restraints) Performing minimization step: 3181. Total energy = 4725.4360 kcal/mol (4713.2908 without restraints) Performing minimization step: 3182. Total energy = 4724.0607 kcal/mol (4711.9191 without restraints) Performing minimization step: 3183. Total energy = 4722.6873 kcal/mol (4710.5492 without restraints) Performing minimization step: 3184. Total energy = 4721.3152 kcal/mol (4709.1807 without restraints) Performing minimization step: 3185. Total energy = 4719.9448 kcal/mol (4707.8139 without restraints) Performing minimization step: 3186. Total energy = 4718.5759 kcal/mol (4706.4485 without restraints) Performing minimization step: 3187. Total energy = 4717.2085 kcal/mol (4705.0848 without restraints) Performing minimization step: 3188. Total energy = 4715.8433 kcal/mol (4703.7232 without restraints) Performing minimization step: 3189. Total energy = 4714.4798 kcal/mol (4702.3632 without restraints) Performing minimization step: 3190. Total energy = 4713.1169 kcal/mol (4701.0039 without restraints) Performing minimization step: 3191. Total energy = 4711.7565 kcal/mol (4699.6472 without restraints) Performing minimization step: 3192. Total energy = 4710.3971 kcal/mol (4698.2912 without restraints) Performing minimization step: 3193. Total energy = 4709.0389 kcal/mol (4696.9366 without restraints) Performing minimization step: 3194. Total energy = 4707.6826 kcal/mol (4695.5839 without restraints) Performing minimization step: 3195. Total energy = 4706.3278 kcal/mol (4694.2326 without restraints) Performing minimization step: 3196. Total energy = 4704.9746 kcal/mol (4692.8831 without restraints) Performing minimization step: 3197. Total energy = 4703.6232 kcal/mol (4691.5353 without restraints) Performing minimization step: 3198. Total energy = 4702.2732 kcal/mol (4690.1888 without restraints) Performing minimization step: 3199. Total energy = 4700.9247 kcal/mol (4688.8439 without restraints) Performing minimization step: 3200. Total energy = 4699.5779 kcal/mol (4687.5006 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 4698.2327 kcal/mol (4686.1592 without restraints) Performing minimization step: 3202. Total energy = 4696.8895 kcal/mol (4684.8194 without restraints) Performing minimization step: 3203. Total energy = 4695.5475 kcal/mol (4683.4810 without restraints) Performing minimization step: 3204. Total energy = 4694.2065 kcal/mol (4682.1436 without restraints) Performing minimization step: 3205. Total energy = 4692.8672 kcal/mol (4680.8079 without restraints) Performing minimization step: 3206. Total energy = 4691.5297 kcal/mol (4679.4740 without restraints) Performing minimization step: 3207. Total energy = 4690.1939 kcal/mol (4678.1418 without restraints) Performing minimization step: 3208. Total energy = 4688.8593 kcal/mol (4676.8107 without restraints) Performing minimization step: 3209. Total energy = 4687.5265 kcal/mol (4675.4815 without restraints) Performing minimization step: 3210. Total energy = 4686.1950 kcal/mol (4674.1536 without restraints) Performing minimization step: 3211. Total energy = 4684.8653 kcal/mol (4672.8276 without restraints) Performing minimization step: 3212. Total energy = 4683.5368 kcal/mol (4671.5025 without restraints) Performing minimization step: 3213. Total energy = 4682.2098 kcal/mol (4670.1791 without restraints) Performing minimization step: 3214. Total energy = 4680.8846 kcal/mol (4668.8575 without restraints) Performing minimization step: 3215. Total energy = 4679.5610 kcal/mol (4667.5375 without restraints) Performing minimization step: 3216. Total energy = 4678.2386 kcal/mol (4666.2187 without restraints) Performing minimization step: 3217. Total energy = 4676.9174 kcal/mol (4664.9010 without restraints) Performing minimization step: 3218. Total energy = 4675.5982 kcal/mol (4663.5855 without restraints) Performing minimization step: 3219. Total energy = 4674.2804 kcal/mol (4662.2712 without restraints) Performing minimization step: 3220. Total energy = 4672.9641 kcal/mol (4660.9585 without restraints) Performing minimization step: 3221. Total energy = 4671.6493 kcal/mol (4659.6473 without restraints) Performing minimization step: 3222. Total energy = 4670.3360 kcal/mol (4658.3376 without restraints) Performing minimization step: 3223. Total energy = 4669.0242 kcal/mol (4657.0294 without restraints) Performing minimization step: 3224. Total energy = 4667.7139 kcal/mol (4655.7227 without restraints) Performing minimization step: 3225. Total energy = 4666.4051 kcal/mol (4654.4175 without restraints) Performing minimization step: 3226. Total energy = 4665.0981 kcal/mol (4653.1141 without restraints) Performing minimization step: 3227. Total energy = 4663.7924 kcal/mol (4651.8119 without restraints) Performing minimization step: 3228. Total energy = 4662.4882 kcal/mol (4650.5114 without restraints) Performing minimization step: 3229. Total energy = 4661.1855 kcal/mol (4649.2123 without restraints) Performing minimization step: 3230. Total energy = 4659.8843 kcal/mol (4647.9146 without restraints) Performing minimization step: 3231. Total energy = 4658.5847 kcal/mol (4646.6186 without restraints) Performing minimization step: 3232. Total energy = 4657.2864 kcal/mol (4645.3239 without restraints) Performing minimization step: 3233. Total energy = 4655.9897 kcal/mol (4644.0308 without restraints) Performing minimization step: 3234. Total energy = 4654.6942 kcal/mol (4642.7388 without restraints) Performing minimization step: 3235. Total energy = 4653.4002 kcal/mol (4641.4483 without restraints) Performing minimization step: 3236. Total energy = 4652.1078 kcal/mol (4640.1596 without restraints) Performing minimization step: 3237. Total energy = 4650.8171 kcal/mol (4638.8725 without restraints) Performing minimization step: 3238. Total energy = 4649.5279 kcal/mol (4637.5870 without restraints) Performing minimization step: 3239. Total energy = 4648.2406 kcal/mol (4636.3031 without restraints) Performing minimization step: 3240. Total energy = 4646.9541 kcal/mol (4635.0202 without restraints) Performing minimization step: 3241. Total energy = 4645.6691 kcal/mol (4633.7388 without restraints) Performing minimization step: 3242. Total energy = 4644.3861 kcal/mol (4632.4595 without restraints) Performing minimization step: 3243. Total energy = 4643.1046 kcal/mol (4631.1815 without restraints) Performing minimization step: 3244. Total energy = 4641.8238 kcal/mol (4629.9044 without restraints) Performing minimization step: 3245. Total energy = 4640.5447 kcal/mol (4628.6288 without restraints) Performing minimization step: 3246. Total energy = 4639.2675 kcal/mol (4627.3552 without restraints) Performing minimization step: 3247. Total energy = 4637.9913 kcal/mol (4626.0825 without restraints) Performing minimization step: 3248. Total energy = 4636.7174 kcal/mol (4624.8122 without restraints) Performing minimization step: 3249. Total energy = 4635.4441 kcal/mol (4623.5425 without restraints) Performing minimization step: 3250. Total energy = 4634.1722 kcal/mol (4622.2743 without restraints) Performing minimization step: 3251. Total energy = 4632.9018 kcal/mol (4621.0075 without restraints) Performing minimization step: 3252. Total energy = 4631.6329 kcal/mol (4619.7421 without restraints) Performing minimization step: 3253. Total energy = 4630.3652 kcal/mol (4618.4780 without restraints) Performing minimization step: 3254. Total energy = 4629.0992 kcal/mol (4617.2156 without restraints) Performing minimization step: 3255. Total energy = 4627.8349 kcal/mol (4615.9547 without restraints) Performing minimization step: 3256. Total energy = 4626.5716 kcal/mol (4614.6951 without restraints) Performing minimization step: 3257. Total energy = 4625.3102 kcal/mol (4613.4374 without restraints) Performing minimization step: 3258. Total energy = 4624.0504 kcal/mol (4612.1811 without restraints) Performing minimization step: 3259. Total energy = 4622.7918 kcal/mol (4610.9262 without restraints) Performing minimization step: 3260. Total energy = 4621.5344 kcal/mol (4609.6724 without restraints) Performing minimization step: 3261. Total energy = 4620.2782 kcal/mol (4608.4197 without restraints) Performing minimization step: 3262. Total energy = 4619.0234 kcal/mol (4607.1685 without restraints) Performing minimization step: 3263. Total energy = 4617.7703 kcal/mol (4605.9189 without restraints) Performing minimization step: 3264. Total energy = 4616.5185 kcal/mol (4604.6708 without restraints) Performing minimization step: 3265. Total energy = 4615.2681 kcal/mol (4603.4239 without restraints) Performing minimization step: 3266. Total energy = 4614.0192 kcal/mol (4602.1787 without restraints) Performing minimization step: 3267. Total energy = 4612.7721 kcal/mol (4600.9352 without restraints) Performing minimization step: 3268. Total energy = 4611.5264 kcal/mol (4599.6931 without restraints) Performing minimization step: 3269. Total energy = 4610.2818 kcal/mol (4598.4520 without restraints) Performing minimization step: 3270. Total energy = 4609.0386 kcal/mol (4597.2125 without restraints) Performing minimization step: 3271. Total energy = 4607.7971 kcal/mol (4595.9744 without restraints) Performing minimization step: 3272. Total energy = 4606.5573 kcal/mol (4594.7384 without restraints) Performing minimization step: 3273. Total energy = 4605.3183 kcal/mol (4593.5029 without restraints) Performing minimization step: 3274. Total energy = 4604.0808 kcal/mol (4592.2690 without restraints) Performing minimization step: 3275. Total energy = 4602.8446 kcal/mol (4591.0363 without restraints) Performing minimization step: 3276. Total energy = 4601.6095 kcal/mol (4589.8047 without restraints) Performing minimization step: 3277. Total energy = 4600.3759 kcal/mol (4588.5748 without restraints) Performing minimization step: 3278. Total energy = 4599.1446 kcal/mol (4587.3471 without restraints) Performing minimization step: 3279. Total energy = 4597.9139 kcal/mol (4586.1200 without restraints) Performing minimization step: 3280. Total energy = 4596.6843 kcal/mol (4584.8940 without restraints) Performing minimization step: 3281. Total energy = 4595.4563 kcal/mol (4583.6696 without restraints) Performing minimization step: 3282. Total energy = 4594.2304 kcal/mol (4582.4472 without restraints) Performing minimization step: 3283. Total energy = 4593.0048 kcal/mol (4581.2252 without restraints) Performing minimization step: 3284. Total energy = 4591.7810 kcal/mol (4580.0049 without restraints) Performing minimization step: 3285. Total energy = 4590.5585 kcal/mol (4578.7861 without restraints) Performing minimization step: 3286. Total energy = 4589.3374 kcal/mol (4577.5686 without restraints) Performing minimization step: 3287. Total energy = 4588.1178 kcal/mol (4576.3526 without restraints) Performing minimization step: 3288. Total energy = 4586.8997 kcal/mol (4575.1380 without restraints) Performing minimization step: 3289. Total energy = 4585.6830 kcal/mol (4573.9249 without restraints) Performing minimization step: 3290. Total energy = 4584.4676 kcal/mol (4572.7132 without restraints) Performing minimization step: 3291. Total energy = 4583.2539 kcal/mol (4571.5030 without restraints) Performing minimization step: 3292. Total energy = 4582.0410 kcal/mol (4570.2938 without restraints) Performing minimization step: 3293. Total energy = 4580.8295 kcal/mol (4569.0858 without restraints) Performing minimization step: 3294. Total energy = 4579.6193 kcal/mol (4567.8792 without restraints) Performing minimization step: 3295. Total energy = 4578.4105 kcal/mol (4566.6740 without restraints) Performing minimization step: 3296. Total energy = 4577.2031 kcal/mol (4565.4701 without restraints) Performing minimization step: 3297. Total energy = 4575.9971 kcal/mol (4564.2678 without restraints) Performing minimization step: 3298. Total energy = 4574.7924 kcal/mol (4563.0665 without restraints) Performing minimization step: 3299. Total energy = 4573.5891 kcal/mol (4561.8669 without restraints) Performing minimization step: 3300. Total energy = 4572.3870 kcal/mol (4560.6684 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 4571.1862 kcal/mol (4559.4712 without restraints) Performing minimization step: 3302. Total energy = 4569.9870 kcal/mol (4558.2755 without restraints) Performing minimization step: 3303. Total energy = 4568.7888 kcal/mol (4557.0810 without restraints) Performing minimization step: 3304. Total energy = 4567.5924 kcal/mol (4555.8881 without restraints) Performing minimization step: 3305. Total energy = 4566.3972 kcal/mol (4554.6965 without restraints) Performing minimization step: 3306. Total energy = 4565.2031 kcal/mol (4553.5059 without restraints) Performing minimization step: 3307. Total energy = 4564.0104 kcal/mol (4552.3168 without restraints) Performing minimization step: 3308. Total energy = 4562.8189 kcal/mol (4551.1290 without restraints) Performing minimization step: 3309. Total energy = 4561.6287 kcal/mol (4549.9423 without restraints) Performing minimization step: 3310. Total energy = 4560.4399 kcal/mol (4548.7572 without restraints) Performing minimization step: 3311. Total energy = 4559.2529 kcal/mol (4547.5738 without restraints) Performing minimization step: 3312. Total energy = 4558.0668 kcal/mol (4546.3911 without restraints) Performing minimization step: 3313. Total energy = 4556.8818 kcal/mol (4545.2098 without restraints) Performing minimization step: 3314. Total energy = 4555.6980 kcal/mol (4544.0294 without restraints) Performing minimization step: 3315. Total energy = 4554.5159 kcal/mol (4542.8511 without restraints) Performing minimization step: 3316. Total energy = 4553.3351 kcal/mol (4541.6739 without restraints) Performing minimization step: 3317. Total energy = 4552.1555 kcal/mol (4540.4978 without restraints) Performing minimization step: 3318. Total energy = 4550.9772 kcal/mol (4539.3232 without restraints) Performing minimization step: 3319. Total energy = 4549.8003 kcal/mol (4538.1497 without restraints) Performing minimization step: 3320. Total energy = 4548.6245 kcal/mol (4536.9775 without restraints) Performing minimization step: 3321. Total energy = 4547.4497 kcal/mol (4535.8064 without restraints) Performing minimization step: 3322. Total energy = 4546.2770 kcal/mol (4534.6372 without restraints) Performing minimization step: 3323. Total energy = 4545.1051 kcal/mol (4533.4689 without restraints) Performing minimization step: 3324. Total energy = 4543.9347 kcal/mol (4532.3021 without restraints) Performing minimization step: 3325. Total energy = 4542.7654 kcal/mol (4531.1363 without restraints) Performing minimization step: 3326. Total energy = 4541.5973 kcal/mol (4529.9719 without restraints) Performing minimization step: 3327. Total energy = 4540.4308 kcal/mol (4528.8089 without restraints) Performing minimization step: 3328. Total energy = 4539.2653 kcal/mol (4527.6470 without restraints) Performing minimization step: 3329. Total energy = 4538.1010 kcal/mol (4526.4863 without restraints) Performing minimization step: 3330. Total energy = 4536.9383 kcal/mol (4525.3271 without restraints) Performing minimization step: 3331. Total energy = 4535.7766 kcal/mol (4524.1690 without restraints) Performing minimization step: 3332. Total energy = 4534.6164 kcal/mol (4523.0124 without restraints) Performing minimization step: 3333. Total energy = 4533.4570 kcal/mol (4521.8566 without restraints) Performing minimization step: 3334. Total energy = 4532.2993 kcal/mol (4520.7025 without restraints) Performing minimization step: 3335. Total energy = 4531.1427 kcal/mol (4519.5495 without restraints) Performing minimization step: 3336. Total energy = 4529.9874 kcal/mol (4518.3977 without restraints) Performing minimization step: 3337. Total energy = 4528.8332 kcal/mol (4517.2471 without restraints) Performing minimization step: 3338. Total energy = 4527.6803 kcal/mol (4516.0978 without restraints) Performing minimization step: 3339. Total energy = 4526.5287 kcal/mol (4514.9498 without restraints) Performing minimization step: 3340. Total energy = 4525.3784 kcal/mol (4513.8030 without restraints) Performing minimization step: 3341. Total energy = 4524.2294 kcal/mol (4512.6577 without restraints) Performing minimization step: 3342. Total energy = 4523.0817 kcal/mol (4511.5135 without restraints) Performing minimization step: 3343. Total energy = 4521.9349 kcal/mol (4510.3702 without restraints) Performing minimization step: 3344. Total energy = 4520.7897 kcal/mol (4509.2287 without restraints) Performing minimization step: 3345. Total energy = 4519.6454 kcal/mol (4508.0879 without restraints) Performing minimization step: 3346. Total energy = 4518.5031 kcal/mol (4506.9491 without restraints) Performing minimization step: 3347. Total energy = 4517.3615 kcal/mol (4505.8112 without restraints) Performing minimization step: 3348. Total energy = 4516.2213 kcal/mol (4504.6746 without restraints) Performing minimization step: 3349. Total energy = 4515.0821 kcal/mol (4503.5388 without restraints) Performing minimization step: 3350. Total energy = 4513.9441 kcal/mol (4502.4045 without restraints) Performing minimization step: 3351. Total energy = 4512.8074 kcal/mol (4501.2714 without restraints) Performing minimization step: 3352. Total energy = 4511.6719 kcal/mol (4500.1394 without restraints) Performing minimization step: 3353. Total energy = 4510.5377 kcal/mol (4499.0088 without restraints) Performing minimization step: 3354. Total energy = 4509.4046 kcal/mol (4497.8793 without restraints) Performing minimization step: 3355. Total energy = 4508.2728 kcal/mol (4496.7511 without restraints) Performing minimization step: 3356. Total energy = 4507.1424 kcal/mol (4495.6245 without restraints) Performing minimization step: 3357. Total energy = 4506.0134 kcal/mol (4494.4990 without restraints) Performing minimization step: 3358. Total energy = 4504.8855 kcal/mol (4493.3746 without restraints) Performing minimization step: 3359. Total energy = 4503.7588 kcal/mol (4492.2514 without restraints) Performing minimization step: 3360. Total energy = 4502.6329 kcal/mol (4491.1290 without restraints) Performing minimization step: 3361. Total energy = 4501.5085 kcal/mol (4490.0082 without restraints) Performing minimization step: 3362. Total energy = 4500.3852 kcal/mol (4488.8885 without restraints) Performing minimization step: 3363. Total energy = 4499.2630 kcal/mol (4487.7699 without restraints) Performing minimization step: 3364. Total energy = 4498.1421 kcal/mol (4486.6524 without restraints) Performing minimization step: 3365. Total energy = 4497.0223 kcal/mol (4485.5364 without restraints) Performing minimization step: 3366. Total energy = 4495.9037 kcal/mol (4484.4213 without restraints) Performing minimization step: 3367. Total energy = 4494.7863 kcal/mol (4483.3074 without restraints) Performing minimization step: 3368. Total energy = 4493.6704 kcal/mol (4482.1953 without restraints) Performing minimization step: 3369. Total energy = 4492.5558 kcal/mol (4481.0840 without restraints) Performing minimization step: 3370. Total energy = 4491.4419 kcal/mol (4479.9738 without restraints) Performing minimization step: 3371. Total energy = 4490.3299 kcal/mol (4478.8655 without restraints) Performing minimization step: 3372. Total energy = 4489.2188 kcal/mol (4477.7578 without restraints) Performing minimization step: 3373. Total energy = 4488.1086 kcal/mol (4476.6511 without restraints) Performing minimization step: 3374. Total energy = 4486.9995 kcal/mol (4475.5456 without restraints) Performing minimization step: 3375. Total energy = 4485.8917 kcal/mol (4474.4414 without restraints) Performing minimization step: 3376. Total energy = 4484.7850 kcal/mol (4473.3382 without restraints) Performing minimization step: 3377. Total energy = 4483.6793 kcal/mol (4472.2362 without restraints) Performing minimization step: 3378. Total energy = 4482.5750 kcal/mol (4471.1353 without restraints) Performing minimization step: 3379. Total energy = 4481.4718 kcal/mol (4470.0358 without restraints) Performing minimization step: 3380. Total energy = 4480.3700 kcal/mol (4468.9375 without restraints) Performing minimization step: 3381. Total energy = 4479.2690 kcal/mol (4467.8401 without restraints) Performing minimization step: 3382. Total energy = 4478.1693 kcal/mol (4466.7439 without restraints) Performing minimization step: 3383. Total energy = 4477.0706 kcal/mol (4465.6488 without restraints) Performing minimization step: 3384. Total energy = 4475.9731 kcal/mol (4464.5549 without restraints) Performing minimization step: 3385. Total energy = 4474.8769 kcal/mol (4463.4622 without restraints) Performing minimization step: 3386. Total energy = 4473.7822 kcal/mol (4462.3711 without restraints) Performing minimization step: 3387. Total energy = 4472.6881 kcal/mol (4461.2805 without restraints) Performing minimization step: 3388. Total energy = 4471.5950 kcal/mol (4460.1910 without restraints) Performing minimization step: 3389. Total energy = 4470.5036 kcal/mol (4459.1032 without restraints) Performing minimization step: 3390. Total energy = 4469.4132 kcal/mol (4458.0164 without restraints) Performing minimization step: 3391. Total energy = 4468.3236 kcal/mol (4456.9302 without restraints) Performing minimization step: 3392. Total energy = 4467.2352 kcal/mol (4455.8454 without restraints) Performing minimization step: 3393. Total energy = 4466.1482 kcal/mol (4454.7619 without restraints) Performing minimization step: 3394. Total energy = 4465.0621 kcal/mol (4453.6795 without restraints) Performing minimization step: 3395. Total energy = 4463.9776 kcal/mol (4452.5985 without restraints) Performing minimization step: 3396. Total energy = 4462.8939 kcal/mol (4451.5184 without restraints) Performing minimization step: 3397. Total energy = 4461.8114 kcal/mol (4450.4394 without restraints) Performing minimization step: 3398. Total energy = 4460.7299 kcal/mol (4449.3614 without restraints) Performing minimization step: 3399. Total energy = 4459.6494 kcal/mol (4448.2846 without restraints) Performing minimization step: 3400. Total energy = 4458.5703 kcal/mol (4447.2091 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 4457.4923 kcal/mol (4446.1345 without restraints) Performing minimization step: 3402. Total energy = 4456.4153 kcal/mol (4445.0611 without restraints) Performing minimization step: 3403. Total energy = 4455.3400 kcal/mol (4443.9894 without restraints) Performing minimization step: 3404. Total energy = 4454.2656 kcal/mol (4442.9185 without restraints) Performing minimization step: 3405. Total energy = 4453.1923 kcal/mol (4441.8488 without restraints) Performing minimization step: 3406. Total energy = 4452.1197 kcal/mol (4440.7797 without restraints) Performing minimization step: 3407. Total energy = 4451.0482 kcal/mol (4439.7118 without restraints) Performing minimization step: 3408. Total energy = 4449.9782 kcal/mol (4438.6453 without restraints) Performing minimization step: 3409. Total energy = 4448.9092 kcal/mol (4437.5800 without restraints) Performing minimization step: 3410. Total energy = 4447.8412 kcal/mol (4436.5154 without restraints) Performing minimization step: 3411. Total energy = 4446.7744 kcal/mol (4435.4522 without restraints) Performing minimization step: 3412. Total energy = 4445.7085 kcal/mol (4434.3898 without restraints) Performing minimization step: 3413. Total energy = 4444.6434 kcal/mol (4433.3282 without restraints) Performing minimization step: 3414. Total energy = 4443.5793 kcal/mol (4432.2676 without restraints) Performing minimization step: 3415. Total energy = 4442.5162 kcal/mol (4431.2082 without restraints) Performing minimization step: 3416. Total energy = 4441.4546 kcal/mol (4430.1501 without restraints) Performing minimization step: 3417. Total energy = 4440.3941 kcal/mol (4429.0933 without restraints) Performing minimization step: 3418. Total energy = 4439.3354 kcal/mol (4428.0381 without restraints) Performing minimization step: 3419. Total energy = 4438.2775 kcal/mol (4426.9836 without restraints) Performing minimization step: 3420. Total energy = 4437.2202 kcal/mol (4425.9301 without restraints) Performing minimization step: 3421. Total energy = 4436.1640 kcal/mol (4424.8773 without restraints) Performing minimization step: 3422. Total energy = 4435.1091 kcal/mol (4423.8262 without restraints) Performing minimization step: 3423. Total energy = 4434.0553 kcal/mol (4422.7755 without restraints) Performing minimization step: 3424. Total energy = 4433.0023 kcal/mol (4421.7262 without restraints) Performing minimization step: 3425. Total energy = 4431.9504 kcal/mol (4420.6779 without restraints) Performing minimization step: 3426. Total energy = 4430.8998 kcal/mol (4419.6308 without restraints) Performing minimization step: 3427. Total energy = 4429.8502 kcal/mol (4418.5848 without restraints) Performing minimization step: 3428. Total energy = 4428.8016 kcal/mol (4417.5396 without restraints) Performing minimization step: 3429. Total energy = 4427.7540 kcal/mol (4416.4955 without restraints) Performing minimization step: 3430. Total energy = 4426.7073 kcal/mol (4415.4525 without restraints) Performing minimization step: 3431. Total energy = 4425.6618 kcal/mol (4414.4105 without restraints) Performing minimization step: 3432. Total energy = 4424.6172 kcal/mol (4413.3694 without restraints) Performing minimization step: 3433. Total energy = 4423.5738 kcal/mol (4412.3296 without restraints) Performing minimization step: 3434. Total energy = 4422.5317 kcal/mol (4411.2910 without restraints) Performing minimization step: 3435. Total energy = 4421.4907 kcal/mol (4410.2536 without restraints) Performing minimization step: 3436. Total energy = 4420.4505 kcal/mol (4409.2169 without restraints) Performing minimization step: 3437. Total energy = 4419.4114 kcal/mol (4408.1813 without restraints) Performing minimization step: 3438. Total energy = 4418.3732 kcal/mol (4407.1467 without restraints) Performing minimization step: 3439. Total energy = 4417.3363 kcal/mol (4406.1133 without restraints) Performing minimization step: 3440. Total energy = 4416.3005 kcal/mol (4405.0810 without restraints) Performing minimization step: 3441. Total energy = 4415.2656 kcal/mol (4404.0497 without restraints) Performing minimization step: 3442. Total energy = 4414.2317 kcal/mol (4403.0194 without restraints) Performing minimization step: 3443. Total energy = 4413.1993 kcal/mol (4401.9905 without restraints) Performing minimization step: 3444. Total energy = 4412.1681 kcal/mol (4400.9628 without restraints) Performing minimization step: 3445. Total energy = 4411.1374 kcal/mol (4399.9356 without restraints) Performing minimization step: 3446. Total energy = 4410.1071 kcal/mol (4398.9089 without restraints) Performing minimization step: 3447. Total energy = 4409.0783 kcal/mol (4397.8836 without restraints) Performing minimization step: 3448. Total energy = 4408.0510 kcal/mol (4396.8598 without restraints) Performing minimization step: 3449. Total energy = 4407.0245 kcal/mol (4395.8368 without restraints) Performing minimization step: 3450. Total energy = 4405.9988 kcal/mol (4394.8146 without restraints) Performing minimization step: 3451. Total energy = 4404.9745 kcal/mol (4393.7941 without restraints) Performing minimization step: 3452. Total energy = 4403.9512 kcal/mol (4392.7741 without restraints) Performing minimization step: 3453. Total energy = 4402.9285 kcal/mol (4391.7550 without restraints) Performing minimization step: 3454. Total energy = 4401.9073 kcal/mol (4390.7373 without restraints) Performing minimization step: 3455. Total energy = 4400.8871 kcal/mol (4389.7206 without restraints) Performing minimization step: 3456. Total energy = 4399.8675 kcal/mol (4388.7045 without restraints) Performing minimization step: 3457. Total energy = 4398.8492 kcal/mol (4387.6898 without restraints) Performing minimization step: 3458. Total energy = 4397.8315 kcal/mol (4386.6756 without restraints) Performing minimization step: 3459. Total energy = 4396.8149 kcal/mol (4385.6625 without restraints) Performing minimization step: 3460. Total energy = 4395.7995 kcal/mol (4384.6506 without restraints) Performing minimization step: 3461. Total energy = 4394.7849 kcal/mol (4383.6395 without restraints) Performing minimization step: 3462. Total energy = 4393.7713 kcal/mol (4382.6294 without restraints) Performing minimization step: 3463. Total energy = 4392.7587 kcal/mol (4381.6203 without restraints) Performing minimization step: 3464. Total energy = 4391.7471 kcal/mol (4380.6123 without restraints) Performing minimization step: 3465. Total energy = 4390.7367 kcal/mol (4379.6054 without restraints) Performing minimization step: 3466. Total energy = 4389.7269 kcal/mol (4378.5992 without restraints) Performing minimization step: 3467. Total energy = 4388.7185 kcal/mol (4377.5944 without restraints) Performing minimization step: 3468. Total energy = 4387.7112 kcal/mol (4376.5905 without restraints) Performing minimization step: 3469. Total energy = 4386.7050 kcal/mol (4375.5878 without restraints) Performing minimization step: 3470. Total energy = 4385.7002 kcal/mol (4374.5865 without restraints) Performing minimization step: 3471. Total energy = 4384.6956 kcal/mol (4373.5854 without restraints) Performing minimization step: 3472. Total energy = 4383.6919 kcal/mol (4372.5852 without restraints) Performing minimization step: 3473. Total energy = 4382.6894 kcal/mol (4371.5862 without restraints) Performing minimization step: 3474. Total energy = 4381.6878 kcal/mol (4370.5882 without restraints) Performing minimization step: 3475. Total energy = 4380.6871 kcal/mol (4369.5910 without restraints) Performing minimization step: 3476. Total energy = 4379.6880 kcal/mol (4368.5954 without restraints) Performing minimization step: 3477. Total energy = 4378.6892 kcal/mol (4367.6001 without restraints) Performing minimization step: 3478. Total energy = 4377.6913 kcal/mol (4366.6057 without restraints) Performing minimization step: 3479. Total energy = 4376.6943 kcal/mol (4365.6122 without restraints) Performing minimization step: 3480. Total energy = 4375.6984 kcal/mol (4364.6199 without restraints) Performing minimization step: 3481. Total energy = 4374.7035 kcal/mol (4363.6284 without restraints) Performing minimization step: 3482. Total energy = 4373.7095 kcal/mol (4362.6380 without restraints) Performing minimization step: 3483. Total energy = 4372.7166 kcal/mol (4361.6486 without restraints) Performing minimization step: 3484. Total energy = 4371.7248 kcal/mol (4360.6602 without restraints) Performing minimization step: 3485. Total energy = 4370.7338 kcal/mol (4359.6727 without restraints) Performing minimization step: 3486. Total energy = 4369.7438 kcal/mol (4358.6863 without restraints) Performing minimization step: 3487. Total energy = 4368.7545 kcal/mol (4357.7004 without restraints) Performing minimization step: 3488. Total energy = 4367.7667 kcal/mol (4356.7162 without restraints) Performing minimization step: 3489. Total energy = 4366.7798 kcal/mol (4355.7328 without restraints) Performing minimization step: 3490. Total energy = 4365.7936 kcal/mol (4354.7501 without restraints) Performing minimization step: 3491. Total energy = 4364.8085 kcal/mol (4353.7685 without restraints) Performing minimization step: 3492. Total energy = 4363.8241 kcal/mol (4352.7876 without restraints) Performing minimization step: 3493. Total energy = 4362.8409 kcal/mol (4351.8079 without restraints) Performing minimization step: 3494. Total energy = 4361.8584 kcal/mol (4350.8289 without restraints) Performing minimization step: 3495. Total energy = 4360.8771 kcal/mol (4349.8512 without restraints) Performing minimization step: 3496. Total energy = 4359.8969 kcal/mol (4348.8744 without restraints) Performing minimization step: 3497. Total energy = 4358.9180 kcal/mol (4347.8990 without restraints) Performing minimization step: 3498. Total energy = 4357.9397 kcal/mol (4346.9242 without restraints) Performing minimization step: 3499. Total energy = 4356.9619 kcal/mol (4345.9498 without restraints) Performing minimization step: 3500. Total energy = 4355.9853 kcal/mol (4344.9768 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 4355.0094 kcal/mol (4344.0043 without restraints) Performing minimization step: 3502. Total energy = 4354.0347 kcal/mol (4343.0332 without restraints) Performing minimization step: 3503. Total energy = 4353.0607 kcal/mol (4342.0627 without restraints) Performing minimization step: 3504. Total energy = 4352.0876 kcal/mol (4341.0930 without restraints) Performing minimization step: 3505. Total energy = 4351.1156 kcal/mol (4340.1245 without restraints) Performing minimization step: 3506. Total energy = 4350.1444 kcal/mol (4339.1568 without restraints) Performing minimization step: 3507. Total energy = 4349.1742 kcal/mol (4338.1901 without restraints) Performing minimization step: 3508. Total energy = 4348.2048 kcal/mol (4337.2243 without restraints) Performing minimization step: 3509. Total energy = 4347.2363 kcal/mol (4336.2592 without restraints) Performing minimization step: 3510. Total energy = 4346.2687 kcal/mol (4335.2951 without restraints) Performing minimization step: 3511. Total energy = 4345.3021 kcal/mol (4334.3319 without restraints) Performing minimization step: 3512. Total energy = 4344.3365 kcal/mol (4333.3699 without restraints) Performing minimization step: 3513. Total energy = 4343.3717 kcal/mol (4332.4086 without restraints) Performing minimization step: 3514. Total energy = 4342.4086 kcal/mol (4331.4489 without restraints) Performing minimization step: 3515. Total energy = 4341.4456 kcal/mol (4330.4895 without restraints) Performing minimization step: 3516. Total energy = 4340.4836 kcal/mol (4329.5309 without restraints) Performing minimization step: 3517. Total energy = 4339.5226 kcal/mol (4328.5734 without restraints) Performing minimization step: 3518. Total energy = 4338.5623 kcal/mol (4327.6166 without restraints) Performing minimization step: 3519. Total energy = 4337.6028 kcal/mol (4326.6607 without restraints) Performing minimization step: 3520. Total energy = 4336.6443 kcal/mol (4325.7055 without restraints) Performing minimization step: 3521. Total energy = 4335.6867 kcal/mol (4324.7514 without restraints) Performing minimization step: 3522. Total energy = 4334.7302 kcal/mol (4323.7984 without restraints) Performing minimization step: 3523. Total energy = 4333.7751 kcal/mol (4322.8467 without restraints) Performing minimization step: 3524. Total energy = 4332.8202 kcal/mol (4321.8953 without restraints) Performing minimization step: 3525. Total energy = 4331.8662 kcal/mol (4320.9448 without restraints) Performing minimization step: 3526. Total energy = 4330.9133 kcal/mol (4319.9954 without restraints) Performing minimization step: 3527. Total energy = 4329.9613 kcal/mol (4319.0469 without restraints) Performing minimization step: 3528. Total energy = 4329.0100 kcal/mol (4318.0990 without restraints) Performing minimization step: 3529. Total energy = 4328.0596 kcal/mol (4317.1521 without restraints) Performing minimization step: 3530. Total energy = 4327.1101 kcal/mol (4316.2062 without restraints) Performing minimization step: 3531. Total energy = 4326.1619 kcal/mol (4315.2613 without restraints) Performing minimization step: 3532. Total energy = 4325.2141 kcal/mol (4314.3170 without restraints) Performing minimization step: 3533. Total energy = 4324.2672 kcal/mol (4313.3736 without restraints) Performing minimization step: 3534. Total energy = 4323.3212 kcal/mol (4312.4310 without restraints) Performing minimization step: 3535. Total energy = 4322.3766 kcal/mol (4311.4901 without restraints) Performing minimization step: 3536. Total energy = 4321.4324 kcal/mol (4310.5492 without restraints) Performing minimization step: 3537. Total energy = 4320.4891 kcal/mol (4309.6093 without restraints) Performing minimization step: 3538. Total energy = 4319.5466 kcal/mol (4308.6705 without restraints) Performing minimization step: 3539. Total energy = 4318.6051 kcal/mol (4307.7323 without restraints) Performing minimization step: 3540. Total energy = 4317.6643 kcal/mol (4306.7949 without restraints) Performing minimization step: 3541. Total energy = 4316.7248 kcal/mol (4305.8589 without restraints) Performing minimization step: 3542. Total energy = 4315.7862 kcal/mol (4304.9237 without restraints) Performing minimization step: 3543. Total energy = 4314.8479 kcal/mol (4303.9890 without restraints) Performing minimization step: 3544. Total energy = 4313.9108 kcal/mol (4303.0553 without restraints) Performing minimization step: 3545. Total energy = 4312.9748 kcal/mol (4302.1228 without restraints) Performing minimization step: 3546. Total energy = 4312.0393 kcal/mol (4301.1907 without restraints) Performing minimization step: 3547. Total energy = 4311.1044 kcal/mol (4300.2593 without restraints) Performing minimization step: 3548. Total energy = 4310.1709 kcal/mol (4299.3292 without restraints) Performing minimization step: 3549. Total energy = 4309.2381 kcal/mol (4298.3997 without restraints) Performing minimization step: 3550. Total energy = 4308.3061 kcal/mol (4297.4712 without restraints) Performing minimization step: 3551. Total energy = 4307.3748 kcal/mol (4296.5435 without restraints) Performing minimization step: 3552. Total energy = 4306.4441 kcal/mol (4295.6161 without restraints) Performing minimization step: 3553. Total energy = 4305.5144 kcal/mol (4294.6900 without restraints) Performing minimization step: 3554. Total energy = 4304.5862 kcal/mol (4293.7654 without restraints) Performing minimization step: 3555. Total energy = 4303.6588 kcal/mol (4292.8413 without restraints) Performing minimization step: 3556. Total energy = 4302.7317 kcal/mol (4291.9177 without restraints) Performing minimization step: 3557. Total energy = 4301.8060 kcal/mol (4290.9954 without restraints) Performing minimization step: 3558. Total energy = 4300.8808 kcal/mol (4290.0738 without restraints) Performing minimization step: 3559. Total energy = 4299.9566 kcal/mol (4289.1529 without restraints) Performing minimization step: 3560. Total energy = 4299.0327 kcal/mol (4288.2325 without restraints) Performing minimization step: 3561. Total energy = 4298.1099 kcal/mol (4287.3132 without restraints) Performing minimization step: 3562. Total energy = 4297.1879 kcal/mol (4286.3946 without restraints) Performing minimization step: 3563. Total energy = 4296.2668 kcal/mol (4285.4769 without restraints) Performing minimization step: 3564. Total energy = 4295.3464 kcal/mol (4284.5600 without restraints) Performing minimization step: 3565. Total energy = 4294.4268 kcal/mol (4283.6437 without restraints) Performing minimization step: 3566. Total energy = 4293.5079 kcal/mol (4282.7283 without restraints) Performing minimization step: 3567. Total energy = 4292.5902 kcal/mol (4281.8141 without restraints) Performing minimization step: 3568. Total energy = 4291.6735 kcal/mol (4280.9008 without restraints) Performing minimization step: 3569. Total energy = 4290.7573 kcal/mol (4279.9881 without restraints) Performing minimization step: 3570. Total energy = 4289.8420 kcal/mol (4279.0762 without restraints) Performing minimization step: 3571. Total energy = 4288.9276 kcal/mol (4278.1652 without restraints) Performing minimization step: 3572. Total energy = 4288.0145 kcal/mol (4277.2557 without restraints) Performing minimization step: 3573. Total energy = 4287.1015 kcal/mol (4276.3460 without restraints) Performing minimization step: 3574. Total energy = 4286.1897 kcal/mol (4275.4376 without restraints) Performing minimization step: 3575. Total energy = 4285.2787 kcal/mol (4274.5301 without restraints) Performing minimization step: 3576. Total energy = 4284.3683 kcal/mol (4273.6231 without restraints) Performing minimization step: 3577. Total energy = 4283.4587 kcal/mol (4272.7170 without restraints) Performing minimization step: 3578. Total energy = 4282.5500 kcal/mol (4271.8117 without restraints) Performing minimization step: 3579. Total energy = 4281.6421 kcal/mol (4270.9072 without restraints) Performing minimization step: 3580. Total energy = 4280.7350 kcal/mol (4270.0036 without restraints) Performing minimization step: 3581. Total energy = 4279.8287 kcal/mol (4269.1007 without restraints) Performing minimization step: 3582. Total energy = 4278.9229 kcal/mol (4268.1983 without restraints) Performing minimization step: 3583. Total energy = 4278.0180 kcal/mol (4267.2969 without restraints) Performing minimization step: 3584. Total energy = 4277.1145 kcal/mol (4266.3968 without restraints) Performing minimization step: 3585. Total energy = 4276.2114 kcal/mol (4265.4971 without restraints) Performing minimization step: 3586. Total energy = 4275.3095 kcal/mol (4264.5987 without restraints) Performing minimization step: 3587. Total energy = 4274.4081 kcal/mol (4263.7007 without restraints) Performing minimization step: 3588. Total energy = 4273.5080 kcal/mol (4262.8040 without restraints) Performing minimization step: 3589. Total energy = 4272.6084 kcal/mol (4261.9078 without restraints) Performing minimization step: 3590. Total energy = 4271.7097 kcal/mol (4261.0125 without restraints) Performing minimization step: 3591. Total energy = 4270.8115 kcal/mol (4260.1177 without restraints) Performing minimization step: 3592. Total energy = 4269.9140 kcal/mol (4259.2237 without restraints) Performing minimization step: 3593. Total energy = 4269.0177 kcal/mol (4258.3308 without restraints) Performing minimization step: 3594. Total energy = 4268.1219 kcal/mol (4257.4384 without restraints) Performing minimization step: 3595. Total energy = 4267.2271 kcal/mol (4256.5470 without restraints) Performing minimization step: 3596. Total energy = 4266.3337 kcal/mol (4255.6570 without restraints) Performing minimization step: 3597. Total energy = 4265.4405 kcal/mol (4254.7674 without restraints) Performing minimization step: 3598. Total energy = 4264.5480 kcal/mol (4253.8781 without restraints) Performing minimization step: 3599. Total energy = 4263.6561 kcal/mol (4252.9896 without restraints) Performing minimization step: 3600. Total energy = 4262.7650 kcal/mol (4252.1020 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 4261.8749 kcal/mol (4251.2153 without restraints) Performing minimization step: 3602. Total energy = 4260.9859 kcal/mol (4250.3296 without restraints) Performing minimization step: 3603. Total energy = 4260.0971 kcal/mol (4249.4443 without restraints) Performing minimization step: 3604. Total energy = 4259.2092 kcal/mol (4248.5599 without restraints) Performing minimization step: 3605. Total energy = 4258.3222 kcal/mol (4247.6762 without restraints) Performing minimization step: 3606. Total energy = 4257.4361 kcal/mol (4246.7937 without restraints) Performing minimization step: 3607. Total energy = 4256.5510 kcal/mol (4245.9118 without restraints) Performing minimization step: 3608. Total energy = 4255.6665 kcal/mol (4245.0307 without restraints) Performing minimization step: 3609. Total energy = 4254.7828 kcal/mol (4244.1504 without restraints) Performing minimization step: 3610. Total energy = 4253.8997 kcal/mol (4243.2708 without restraints) Performing minimization step: 3611. Total energy = 4253.0174 kcal/mol (4242.3918 without restraints) Performing minimization step: 3612. Total energy = 4252.1359 kcal/mol (4241.5137 without restraints) Performing minimization step: 3613. Total energy = 4251.2563 kcal/mol (4240.6376 without restraints) Performing minimization step: 3614. Total energy = 4250.3765 kcal/mol (4239.7611 without restraints) Performing minimization step: 3615. Total energy = 4249.4971 kcal/mol (4238.8851 without restraints) Performing minimization step: 3616. Total energy = 4248.6185 kcal/mol (4238.0099 without restraints) Performing minimization step: 3617. Total energy = 4247.7408 kcal/mol (4237.1357 without restraints) Performing minimization step: 3618. Total energy = 4246.8638 kcal/mol (4236.2620 without restraints) Performing minimization step: 3619. Total energy = 4245.9875 kcal/mol (4235.3890 without restraints) Performing minimization step: 3620. Total energy = 4245.1119 kcal/mol (4234.5169 without restraints) Performing minimization step: 3621. Total energy = 4244.2373 kcal/mol (4233.6457 without restraints) Performing minimization step: 3622. Total energy = 4243.3633 kcal/mol (4232.7750 without restraints) Performing minimization step: 3623. Total energy = 4242.4900 kcal/mol (4231.9051 without restraints) Performing minimization step: 3624. Total energy = 4241.6175 kcal/mol (4231.0360 without restraints) Performing minimization step: 3625. Total energy = 4240.7459 kcal/mol (4230.1679 without restraints) Performing minimization step: 3626. Total energy = 4239.8751 kcal/mol (4229.3005 without restraints) Performing minimization step: 3627. Total energy = 4239.0053 kcal/mol (4228.4340 without restraints) Performing minimization step: 3628. Total energy = 4238.1356 kcal/mol (4227.5677 without restraints) Performing minimization step: 3629. Total energy = 4237.2669 kcal/mol (4226.7024 without restraints) Performing minimization step: 3630. Total energy = 4236.3990 kcal/mol (4225.8379 without restraints) Performing minimization step: 3631. Total energy = 4235.5321 kcal/mol (4224.9743 without restraints) Performing minimization step: 3632. Total energy = 4234.6655 kcal/mol (4224.1110 without restraints) Performing minimization step: 3633. Total energy = 4233.7997 kcal/mol (4223.2487 without restraints) Performing minimization step: 3634. Total energy = 4232.9343 kcal/mol (4222.3867 without restraints) Performing minimization step: 3635. Total energy = 4232.0701 kcal/mol (4221.5259 without restraints) Performing minimization step: 3636. Total energy = 4231.2066 kcal/mol (4220.6657 without restraints) Performing minimization step: 3637. Total energy = 4230.3441 kcal/mol (4219.8067 without restraints) Performing minimization step: 3638. Total energy = 4229.4822 kcal/mol (4218.9481 without restraints) Performing minimization step: 3639. Total energy = 4228.6210 kcal/mol (4218.0904 without restraints) Performing minimization step: 3640. Total energy = 4227.7608 kcal/mol (4217.2335 without restraints) Performing minimization step: 3641. Total energy = 4226.9012 kcal/mol (4216.3772 without restraints) Performing minimization step: 3642. Total energy = 4226.0421 kcal/mol (4215.5214 without restraints) Performing minimization step: 3643. Total energy = 4225.1838 kcal/mol (4214.6665 without restraints) Performing minimization step: 3644. Total energy = 4224.3265 kcal/mol (4213.8127 without restraints) Performing minimization step: 3645. Total energy = 4223.4700 kcal/mol (4212.9595 without restraints) Performing minimization step: 3646. Total energy = 4222.6141 kcal/mol (4212.1070 without restraints) Performing minimization step: 3647. Total energy = 4221.7586 kcal/mol (4211.2548 without restraints) Performing minimization step: 3648. Total energy = 4220.9042 kcal/mol (4210.4038 without restraints) Performing minimization step: 3649. Total energy = 4220.0504 kcal/mol (4209.5535 without restraints) Performing minimization step: 3650. Total energy = 4219.1975 kcal/mol (4208.7038 without restraints) Performing minimization step: 3651. Total energy = 4218.3449 kcal/mol (4207.8545 without restraints) Performing minimization step: 3652. Total energy = 4217.4934 kcal/mol (4207.0064 without restraints) Performing minimization step: 3653. Total energy = 4216.6425 kcal/mol (4206.1590 without restraints) Performing minimization step: 3654. Total energy = 4215.7925 kcal/mol (4205.3123 without restraints) Performing minimization step: 3655. Total energy = 4214.9432 kcal/mol (4204.4663 without restraints) Performing minimization step: 3656. Total energy = 4214.0945 kcal/mol (4203.6210 without restraints) Performing minimization step: 3657. Total energy = 4213.2458 kcal/mol (4202.7756 without restraints) Performing minimization step: 3658. Total energy = 4212.3987 kcal/mol (4201.9319 without restraints) Performing minimization step: 3659. Total energy = 4211.5521 kcal/mol (4201.0886 without restraints) Performing minimization step: 3660. Total energy = 4210.7062 kcal/mol (4200.2462 without restraints) Performing minimization step: 3661. Total energy = 4209.8612 kcal/mol (4199.4044 without restraints) Performing minimization step: 3662. Total energy = 4209.0167 kcal/mol (4198.5633 without restraints) Performing minimization step: 3663. Total energy = 4208.1726 kcal/mol (4197.7225 without restraints) Performing minimization step: 3664. Total energy = 4207.3295 kcal/mol (4196.8828 without restraints) Performing minimization step: 3665. Total energy = 4206.4878 kcal/mol (4196.0444 without restraints) Performing minimization step: 3666. Total energy = 4205.6463 kcal/mol (4195.2063 without restraints) Performing minimization step: 3667. Total energy = 4204.8054 kcal/mol (4194.3687 without restraints) Performing minimization step: 3668. Total energy = 4203.9654 kcal/mol (4193.5321 without restraints) Performing minimization step: 3669. Total energy = 4203.1257 kcal/mol (4192.6957 without restraints) Performing minimization step: 3670. Total energy = 4202.2870 kcal/mol (4191.8605 without restraints) Performing minimization step: 3671. Total energy = 4201.4490 kcal/mol (4191.0257 without restraints) Performing minimization step: 3672. Total energy = 4200.6123 kcal/mol (4190.1924 without restraints) Performing minimization step: 3673. Total energy = 4199.7760 kcal/mol (4189.3594 without restraints) Performing minimization step: 3674. Total energy = 4198.9402 kcal/mol (4188.5270 without restraints) Performing minimization step: 3675. Total energy = 4198.1052 kcal/mol (4187.6952 without restraints) Performing minimization step: 3676. Total energy = 4197.2708 kcal/mol (4186.8641 without restraints) Performing minimization step: 3677. Total energy = 4196.4373 kcal/mol (4186.0340 without restraints) Performing minimization step: 3678. Total energy = 4195.6044 kcal/mol (4185.2046 without restraints) Performing minimization step: 3679. Total energy = 4194.7720 kcal/mol (4184.3754 without restraints) Performing minimization step: 3680. Total energy = 4193.9401 kcal/mol (4183.5468 without restraints) Performing minimization step: 3681. Total energy = 4193.1095 kcal/mol (4182.7197 without restraints) Performing minimization step: 3682. Total energy = 4192.2792 kcal/mol (4181.8926 without restraints) Performing minimization step: 3683. Total energy = 4191.4498 kcal/mol (4181.0665 without restraints) Performing minimization step: 3684. Total energy = 4190.6214 kcal/mol (4180.2414 without restraints) Performing minimization step: 3685. Total energy = 4189.7933 kcal/mol (4179.4167 without restraints) Performing minimization step: 3686. Total energy = 4188.9659 kcal/mol (4178.5926 without restraints) Performing minimization step: 3687. Total energy = 4188.1391 kcal/mol (4177.7692 without restraints) Performing minimization step: 3688. Total energy = 4187.3127 kcal/mol (4176.9461 without restraints) Performing minimization step: 3689. Total energy = 4186.4872 kcal/mol (4176.1239 without restraints) Performing minimization step: 3690. Total energy = 4185.6624 kcal/mol (4175.3024 without restraints) Performing minimization step: 3691. Total energy = 4184.8385 kcal/mol (4174.4821 without restraints) Performing minimization step: 3692. Total energy = 4184.0153 kcal/mol (4173.6620 without restraints) Performing minimization step: 3693. Total energy = 4183.1927 kcal/mol (4172.8428 without restraints) Performing minimization step: 3694. Total energy = 4182.3710 kcal/mol (4172.0244 without restraints) Performing minimization step: 3695. Total energy = 4181.5498 kcal/mol (4171.2066 without restraints) Performing minimization step: 3696. Total energy = 4180.7296 kcal/mol (4170.3895 without restraints) Performing minimization step: 3697. Total energy = 4179.9096 kcal/mol (4169.5729 without restraints) Performing minimization step: 3698. Total energy = 4179.0905 kcal/mol (4168.7570 without restraints) Performing minimization step: 3699. Total energy = 4178.2718 kcal/mol (4167.9416 without restraints) Performing minimization step: 3700. Total energy = 4177.4539 kcal/mol (4167.1271 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 4176.6369 kcal/mol (4166.3135 without restraints) Performing minimization step: 3702. Total energy = 4175.8205 kcal/mol (4165.5004 without restraints) Performing minimization step: 3703. Total energy = 4175.0046 kcal/mol (4164.6877 without restraints) Performing minimization step: 3704. Total energy = 4174.1893 kcal/mol (4163.8757 without restraints) Performing minimization step: 3705. Total energy = 4173.3745 kcal/mol (4163.0643 without restraints) Performing minimization step: 3706. Total energy = 4172.5608 kcal/mol (4162.2538 without restraints) Performing minimization step: 3707. Total energy = 4171.7475 kcal/mol (4161.4438 without restraints) Performing minimization step: 3708. Total energy = 4170.9351 kcal/mol (4160.6347 without restraints) Performing minimization step: 3709. Total energy = 4170.1231 kcal/mol (4159.8260 without restraints) Performing minimization step: 3710. Total energy = 4169.3118 kcal/mol (4159.0180 without restraints) Performing minimization step: 3711. Total energy = 4168.5014 kcal/mol (4158.2110 without restraints) Performing minimization step: 3712. Total energy = 4167.6916 kcal/mol (4157.4046 without restraints) Performing minimization step: 3713. Total energy = 4166.8827 kcal/mol (4156.5989 without restraints) Performing minimization step: 3714. Total energy = 4166.0740 kcal/mol (4155.7935 without restraints) Performing minimization step: 3715. Total energy = 4165.2663 kcal/mol (4154.9890 without restraints) Performing minimization step: 3716. Total energy = 4164.4594 kcal/mol (4154.1854 without restraints) Performing minimization step: 3717. Total energy = 4163.6527 kcal/mol (4153.3820 without restraints) Performing minimization step: 3718. Total energy = 4162.8469 kcal/mol (4152.5795 without restraints) Performing minimization step: 3719. Total energy = 4162.0416 kcal/mol (4151.7775 without restraints) Performing minimization step: 3720. Total energy = 4161.2371 kcal/mol (4150.9763 without restraints) Performing minimization step: 3721. Total energy = 4160.4331 kcal/mol (4150.1756 without restraints) Performing minimization step: 3722. Total energy = 4159.6298 kcal/mol (4149.3755 without restraints) Performing minimization step: 3723. Total energy = 4158.8271 kcal/mol (4148.5762 without restraints) Performing minimization step: 3724. Total energy = 4158.0252 kcal/mol (4147.7775 without restraints) Performing minimization step: 3725. Total energy = 4157.2238 kcal/mol (4146.9794 without restraints) Performing minimization step: 3726. Total energy = 4156.4231 kcal/mol (4146.1819 without restraints) Performing minimization step: 3727. Total energy = 4155.6234 kcal/mol (4145.3856 without restraints) Performing minimization step: 3728. Total energy = 4154.8240 kcal/mol (4144.5895 without restraints) Performing minimization step: 3729. Total energy = 4154.0255 kcal/mol (4143.7942 without restraints) Performing minimization step: 3730. Total energy = 4153.2274 kcal/mol (4142.9994 without restraints) Performing minimization step: 3731. Total energy = 4152.4303 kcal/mol (4142.2057 without restraints) Performing minimization step: 3732. Total energy = 4151.6336 kcal/mol (4141.4121 without restraints) Performing minimization step: 3733. Total energy = 4150.8374 kcal/mol (4140.6192 without restraints) Performing minimization step: 3734. Total energy = 4150.0424 kcal/mol (4139.8275 without restraints) Performing minimization step: 3735. Total energy = 4149.2477 kcal/mol (4139.0362 without restraints) Performing minimization step: 3736. Total energy = 4148.4539 kcal/mol (4138.2457 without restraints) Performing minimization step: 3737. Total energy = 4147.6602 kcal/mol (4137.4552 without restraints) Performing minimization step: 3738. Total energy = 4146.8674 kcal/mol (4136.6657 without restraints) Performing minimization step: 3739. Total energy = 4146.0756 kcal/mol (4135.8771 without restraints) Performing minimization step: 3740. Total energy = 4145.2842 kcal/mol (4135.0889 without restraints) Performing minimization step: 3741. Total energy = 4144.4934 kcal/mol (4134.3014 without restraints) Performing minimization step: 3742. Total energy = 4143.7030 kcal/mol (4133.5143 without restraints) Performing minimization step: 3743. Total energy = 4142.9136 kcal/mol (4132.7283 without restraints) Performing minimization step: 3744. Total energy = 4142.1245 kcal/mol (4131.9424 without restraints) Performing minimization step: 3745. Total energy = 4141.3363 kcal/mol (4131.1574 without restraints) Performing minimization step: 3746. Total energy = 4140.5489 kcal/mol (4130.3733 without restraints) Performing minimization step: 3747. Total energy = 4139.7619 kcal/mol (4129.5896 without restraints) Performing minimization step: 3748. Total energy = 4138.9754 kcal/mol (4128.8063 without restraints) Performing minimization step: 3749. Total energy = 4138.1894 kcal/mol (4128.0236 without restraints) Performing minimization step: 3750. Total energy = 4137.4044 kcal/mol (4127.2418 without restraints) Performing minimization step: 3751. Total energy = 4136.6198 kcal/mol (4126.4606 without restraints) Performing minimization step: 3752. Total energy = 4135.8360 kcal/mol (4125.6799 without restraints) Performing minimization step: 3753. Total energy = 4135.0529 kcal/mol (4124.9000 without restraints) Performing minimization step: 3754. Total energy = 4134.2701 kcal/mol (4124.1205 without restraints) Performing minimization step: 3755. Total energy = 4133.4880 kcal/mol (4123.3416 without restraints) Performing minimization step: 3756. Total energy = 4132.7066 kcal/mol (4122.5635 without restraints) Performing minimization step: 3757. Total energy = 4131.9258 kcal/mol (4121.7859 without restraints) Performing minimization step: 3758. Total energy = 4131.1459 kcal/mol (4121.0093 without restraints) Performing minimization step: 3759. Total energy = 4130.3665 kcal/mol (4120.2331 without restraints) Performing minimization step: 3760. Total energy = 4129.5875 kcal/mol (4119.4574 without restraints) Performing minimization step: 3761. Total energy = 4128.8091 kcal/mol (4118.6822 without restraints) Performing minimization step: 3762. Total energy = 4128.0321 kcal/mol (4117.9085 without restraints) Performing minimization step: 3763. Total energy = 4127.2558 kcal/mol (4117.1354 without restraints) Performing minimization step: 3764. Total energy = 4126.4794 kcal/mol (4116.3623 without restraints) Performing minimization step: 3765. Total energy = 4125.7039 kcal/mol (4115.5901 without restraints) Performing minimization step: 3766. Total energy = 4124.9291 kcal/mol (4114.8184 without restraints) Performing minimization step: 3767. Total energy = 4124.1546 kcal/mol (4114.0472 without restraints) Performing minimization step: 3768. Total energy = 4123.3808 kcal/mol (4113.2766 without restraints) Performing minimization step: 3769. Total energy = 4122.6077 kcal/mol (4112.5069 without restraints) Performing minimization step: 3770. Total energy = 4121.8356 kcal/mol (4111.7379 without restraints) Performing minimization step: 3771. Total energy = 4121.0641 kcal/mol (4110.9697 without restraints) Performing minimization step: 3772. Total energy = 4120.2932 kcal/mol (4110.2020 without restraints) Performing minimization step: 3773. Total energy = 4119.5223 kcal/mol (4109.4343 without restraints) Performing minimization step: 3774. Total energy = 4118.7522 kcal/mol (4108.6674 without restraints) Performing minimization step: 3775. Total energy = 4117.9829 kcal/mol (4107.9014 without restraints) Performing minimization step: 3776. Total energy = 4117.2140 kcal/mol (4107.1357 without restraints) Performing minimization step: 3777. Total energy = 4116.4455 kcal/mol (4106.3704 without restraints) Performing minimization step: 3778. Total energy = 4115.6780 kcal/mol (4105.6064 without restraints) Performing minimization step: 3779. Total energy = 4114.9109 kcal/mol (4104.8423 without restraints) Performing minimization step: 3780. Total energy = 4114.1442 kcal/mol (4104.0788 without restraints) Performing minimization step: 3781. Total energy = 4113.3781 kcal/mol (4103.3159 without restraints) Performing minimization step: 3782. Total energy = 4112.6126 kcal/mol (4102.5536 without restraints) Performing minimization step: 3783. Total energy = 4111.8479 kcal/mol (4101.7921 without restraints) Performing minimization step: 3784. Total energy = 4111.0837 kcal/mol (4101.0312 without restraints) Performing minimization step: 3785. Total energy = 4110.3202 kcal/mol (4100.2709 without restraints) Performing minimization step: 3786. Total energy = 4109.5570 kcal/mol (4099.5108 without restraints) Performing minimization step: 3787. Total energy = 4108.7948 kcal/mol (4098.7521 without restraints) Performing minimization step: 3788. Total energy = 4108.0332 kcal/mol (4097.9936 without restraints) Performing minimization step: 3789. Total energy = 4107.2720 kcal/mol (4097.2356 without restraints) Performing minimization step: 3790. Total energy = 4106.5113 kcal/mol (4096.4781 without restraints) Performing minimization step: 3791. Total energy = 4105.7512 kcal/mol (4095.7212 without restraints) Performing minimization step: 3792. Total energy = 4104.9920 kcal/mol (4094.9652 without restraints) Performing minimization step: 3793. Total energy = 4104.2332 kcal/mol (4094.2096 without restraints) Performing minimization step: 3794. Total energy = 4103.4749 kcal/mol (4093.4545 without restraints) Performing minimization step: 3795. Total energy = 4102.7177 kcal/mol (4092.7005 without restraints) Performing minimization step: 3796. Total energy = 4101.9609 kcal/mol (4091.9469 without restraints) Performing minimization step: 3797. Total energy = 4101.2043 kcal/mol (4091.1936 without restraints) Performing minimization step: 3798. Total energy = 4100.4489 kcal/mol (4090.4414 without restraints) Performing minimization step: 3799. Total energy = 4099.6937 kcal/mol (4089.6893 without restraints) Performing minimization step: 3800. Total energy = 4098.9390 kcal/mol (4088.9379 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 4098.1851 kcal/mol (4088.1872 without restraints) Performing minimization step: 3802. Total energy = 4097.4319 kcal/mol (4087.4371 without restraints) Performing minimization step: 3803. Total energy = 4096.6792 kcal/mol (4086.6877 without restraints) Performing minimization step: 3804. Total energy = 4095.9267 kcal/mol (4085.9383 without restraints) Performing minimization step: 3805. Total energy = 4095.1751 kcal/mol (4085.1899 without restraints) Performing minimization step: 3806. Total energy = 4094.4239 kcal/mol (4084.4419 without restraints) Performing minimization step: 3807. Total energy = 4093.6734 kcal/mol (4083.6947 without restraints) Performing minimization step: 3808. Total energy = 4092.9235 kcal/mol (4082.9481 without restraints) Performing minimization step: 3809. Total energy = 4092.1743 kcal/mol (4082.2019 without restraints) Performing minimization step: 3810. Total energy = 4091.4257 kcal/mol (4081.4565 without restraints) Performing minimization step: 3811. Total energy = 4090.6775 kcal/mol (4080.7115 without restraints) Performing minimization step: 3812. Total energy = 4089.9302 kcal/mol (4079.9674 without restraints) Performing minimization step: 3813. Total energy = 4089.1832 kcal/mol (4079.2236 without restraints) Performing minimization step: 3814. Total energy = 4088.4374 kcal/mol (4078.4809 without restraints) Performing minimization step: 3815. Total energy = 4087.6920 kcal/mol (4077.7387 without restraints) Performing minimization step: 3816. Total energy = 4086.9470 kcal/mol (4076.9969 without restraints) Performing minimization step: 3817. Total energy = 4086.2024 kcal/mol (4076.2555 without restraints) Performing minimization step: 3818. Total energy = 4085.4585 kcal/mol (4075.5148 without restraints) Performing minimization step: 3819. Total energy = 4084.7155 kcal/mol (4074.7750 without restraints) Performing minimization step: 3820. Total energy = 4083.9728 kcal/mol (4074.0356 without restraints) Performing minimization step: 3821. Total energy = 4083.2306 kcal/mol (4073.2964 without restraints) Performing minimization step: 3822. Total energy = 4082.4888 kcal/mol (4072.5579 without restraints) Performing minimization step: 3823. Total energy = 4081.7475 kcal/mol (4071.8196 without restraints) Performing minimization step: 3824. Total energy = 4081.0073 kcal/mol (4071.0826 without restraints) Performing minimization step: 3825. Total energy = 4080.2673 kcal/mol (4070.3460 without restraints) Performing minimization step: 3826. Total energy = 4079.5279 kcal/mol (4069.6096 without restraints) Performing minimization step: 3827. Total energy = 4078.7888 kcal/mol (4068.8737 without restraints) Performing minimization step: 3828. Total energy = 4078.0505 kcal/mol (4068.1385 without restraints) Performing minimization step: 3829. Total energy = 4077.3129 kcal/mol (4067.4040 without restraints) Performing minimization step: 3830. Total energy = 4076.5759 kcal/mol (4066.6702 without restraints) Performing minimization step: 3831. Total energy = 4075.8392 kcal/mol (4065.9367 without restraints) Performing minimization step: 3832. Total energy = 4075.1032 kcal/mol (4065.2038 without restraints) Performing minimization step: 3833. Total energy = 4074.3677 kcal/mol (4064.4716 without restraints) Performing minimization step: 3834. Total energy = 4073.6328 kcal/mol (4063.7398 without restraints) Performing minimization step: 3835. Total energy = 4072.8985 kcal/mol (4063.0087 without restraints) Performing minimization step: 3836. Total energy = 4072.1647 kcal/mol (4062.2780 without restraints) Performing minimization step: 3837. Total energy = 4071.4316 kcal/mol (4061.5481 without restraints) Performing minimization step: 3838. Total energy = 4070.6989 kcal/mol (4060.8185 without restraints) Performing minimization step: 3839. Total energy = 4069.9672 kcal/mol (4060.0901 without restraints) Performing minimization step: 3840. Total energy = 4069.2360 kcal/mol (4059.3620 without restraints) Performing minimization step: 3841. Total energy = 4068.5050 kcal/mol (4058.6341 without restraints) Performing minimization step: 3842. Total energy = 4067.7745 kcal/mol (4057.9068 without restraints) Performing minimization step: 3843. Total energy = 4067.0448 kcal/mol (4057.1803 without restraints) Performing minimization step: 3844. Total energy = 4066.3156 kcal/mol (4056.4540 without restraints) Performing minimization step: 3845. Total energy = 4065.5870 kcal/mol (4055.7287 without restraints) Performing minimization step: 3846. Total energy = 4064.8590 kcal/mol (4055.0039 without restraints) Performing minimization step: 3847. Total energy = 4064.1317 kcal/mol (4054.2797 without restraints) Performing minimization step: 3848. Total energy = 4063.4048 kcal/mol (4053.5560 without restraints) Performing minimization step: 3849. Total energy = 4062.6781 kcal/mol (4052.8324 without restraints) Performing minimization step: 3850. Total energy = 4061.9522 kcal/mol (4052.1096 without restraints) Performing minimization step: 3851. Total energy = 4061.2271 kcal/mol (4051.3877 without restraints) Performing minimization step: 3852. Total energy = 4060.5022 kcal/mol (4050.6660 without restraints) Performing minimization step: 3853. Total energy = 4059.7781 kcal/mol (4049.9449 without restraints) Performing minimization step: 3854. Total energy = 4059.0543 kcal/mol (4049.2243 without restraints) Performing minimization step: 3855. Total energy = 4058.3311 kcal/mol (4048.5043 without restraints) Performing minimization step: 3856. Total energy = 4057.6087 kcal/mol (4047.7850 without restraints) Performing minimization step: 3857. Total energy = 4056.8866 kcal/mol (4047.0660 without restraints) Performing minimization step: 3858. Total energy = 4056.1657 kcal/mol (4046.3482 without restraints) Performing minimization step: 3859. Total energy = 4055.4445 kcal/mol (4045.6303 without restraints) Performing minimization step: 3860. Total energy = 4054.7241 kcal/mol (4044.9130 without restraints) Performing minimization step: 3861. Total energy = 4054.0047 kcal/mol (4044.1967 without restraints) Performing minimization step: 3862. Total energy = 4053.2855 kcal/mol (4043.4807 without restraints) Performing minimization step: 3863. Total energy = 4052.5670 kcal/mol (4042.7652 without restraints) Performing minimization step: 3864. Total energy = 4051.8489 kcal/mol (4042.0503 without restraints) Performing minimization step: 3865. Total energy = 4051.1313 kcal/mol (4041.3357 without restraints) Performing minimization step: 3866. Total energy = 4050.4144 kcal/mol (4040.6220 without restraints) Performing minimization step: 3867. Total energy = 4049.6981 kcal/mol (4039.9088 without restraints) Performing minimization step: 3868. Total energy = 4048.9821 kcal/mol (4039.1959 without restraints) Performing minimization step: 3869. Total energy = 4048.2670 kcal/mol (4038.4839 without restraints) Performing minimization step: 3870. Total energy = 4047.5520 kcal/mol (4037.7721 without restraints) Performing minimization step: 3871. Total energy = 4046.8377 kcal/mol (4037.0609 without restraints) Performing minimization step: 3872. Total energy = 4046.1243 kcal/mol (4036.3508 without restraints) Performing minimization step: 3873. Total energy = 4045.4112 kcal/mol (4035.6406 without restraints) Performing minimization step: 3874. Total energy = 4044.6984 kcal/mol (4034.9309 without restraints) Performing minimization step: 3875. Total energy = 4043.9868 kcal/mol (4034.2224 without restraints) Performing minimization step: 3876. Total energy = 4043.2753 kcal/mol (4033.5142 without restraints) Performing minimization step: 3877. Total energy = 4042.5648 kcal/mol (4032.8066 without restraints) Performing minimization step: 3878. Total energy = 4041.8543 kcal/mol (4032.0993 without restraints) Performing minimization step: 3879. Total energy = 4041.1446 kcal/mol (4031.3927 without restraints) Performing minimization step: 3880. Total energy = 4040.4351 kcal/mol (4030.6863 without restraints) Performing minimization step: 3881. Total energy = 4039.7265 kcal/mol (4029.9808 without restraints) Performing minimization step: 3882. Total energy = 4039.0183 kcal/mol (4029.2759 without restraints) Performing minimization step: 3883. Total energy = 4038.3107 kcal/mol (4028.5713 without restraints) Performing minimization step: 3884. Total energy = 4037.6033 kcal/mol (4027.8668 without restraints) Performing minimization step: 3885. Total energy = 4036.8964 kcal/mol (4027.1631 without restraints) Performing minimization step: 3886. Total energy = 4036.1900 kcal/mol (4026.4599 without restraints) Performing minimization step: 3887. Total energy = 4035.4845 kcal/mol (4025.7574 without restraints) Performing minimization step: 3888. Total energy = 4034.7793 kcal/mol (4025.0553 without restraints) Performing minimization step: 3889. Total energy = 4034.0746 kcal/mol (4024.3538 without restraints) Performing minimization step: 3890. Total energy = 4033.3703 kcal/mol (4023.6525 without restraints) Performing minimization step: 3891. Total energy = 4032.6670 kcal/mol (4022.9523 without restraints) Performing minimization step: 3892. Total energy = 4031.9640 kcal/mol (4022.2524 without restraints) Performing minimization step: 3893. Total energy = 4031.2616 kcal/mol (4021.5531 without restraints) Performing minimization step: 3894. Total energy = 4030.5596 kcal/mol (4020.8542 without restraints) Performing minimization step: 3895. Total energy = 4029.8583 kcal/mol (4020.1560 without restraints) Performing minimization step: 3896. Total energy = 4029.1574 kcal/mol (4019.4583 without restraints) Performing minimization step: 3897. Total energy = 4028.4573 kcal/mol (4018.7612 without restraints) Performing minimization step: 3898. Total energy = 4027.7572 kcal/mol (4018.0642 without restraints) Performing minimization step: 3899. Total energy = 4027.0579 kcal/mol (4017.3679 without restraints) Performing minimization step: 3900. Total energy = 4026.3593 kcal/mol (4016.6724 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 4025.6610 kcal/mol (4015.9772 without restraints) Performing minimization step: 3902. Total energy = 4024.9632 kcal/mol (4015.2824 without restraints) Performing minimization step: 3903. Total energy = 4024.2658 kcal/mol (4014.5882 without restraints) Performing minimization step: 3904. Total energy = 4023.5695 kcal/mol (4013.8952 without restraints) Performing minimization step: 3905. Total energy = 4022.8734 kcal/mol (4013.2020 without restraints) Performing minimization step: 3906. Total energy = 4022.1777 kcal/mol (4012.5093 without restraints) Performing minimization step: 3907. Total energy = 4021.4826 kcal/mol (4011.8172 without restraints) Performing minimization step: 3908. Total energy = 4020.7881 kcal/mol (4011.1259 without restraints) Performing minimization step: 3909. Total energy = 4020.0941 kcal/mol (4010.4350 without restraints) Performing minimization step: 3910. Total energy = 4019.4006 kcal/mol (4009.7442 without restraints) Performing minimization step: 3911. Total energy = 4018.7076 kcal/mol (4009.0546 without restraints) Performing minimization step: 3912. Total energy = 4018.0148 kcal/mol (4008.3648 without restraints) Performing minimization step: 3913. Total energy = 4017.3229 kcal/mol (4007.6760 without restraints) Performing minimization step: 3914. Total energy = 4016.6317 kcal/mol (4006.9879 without restraints) Performing minimization step: 3915. Total energy = 4015.9406 kcal/mol (4006.2999 without restraints) Performing minimization step: 3916. Total energy = 4015.2502 kcal/mol (4005.6125 without restraints) Performing minimization step: 3917. Total energy = 4014.5601 kcal/mol (4004.9255 without restraints) Performing minimization step: 3918. Total energy = 4013.8706 kcal/mol (4004.2391 without restraints) Performing minimization step: 3919. Total energy = 4013.1818 kcal/mol (4003.5534 without restraints) Performing minimization step: 3920. Total energy = 4012.4937 kcal/mol (4002.8682 without restraints) Performing minimization step: 3921. Total energy = 4011.8057 kcal/mol (4002.1834 without restraints) Performing minimization step: 3922. Total energy = 4011.1183 kcal/mol (4001.4990 without restraints) Performing minimization step: 3923. Total energy = 4010.4315 kcal/mol (4000.8153 without restraints) Performing minimization step: 3924. Total energy = 4009.7456 kcal/mol (4000.1324 without restraints) Performing minimization step: 3925. Total energy = 4009.0600 kcal/mol (3999.4499 without restraints) Performing minimization step: 3926. Total energy = 4008.3748 kcal/mol (3998.7677 without restraints) Performing minimization step: 3927. Total energy = 4007.6901 kcal/mol (3998.0862 without restraints) Performing minimization step: 3928. Total energy = 4007.0058 kcal/mol (3997.4047 without restraints) Performing minimization step: 3929. Total energy = 4006.3220 kcal/mol (3996.7241 without restraints) Performing minimization step: 3930. Total energy = 4005.6387 kcal/mol (3996.0438 without restraints) Performing minimization step: 3931. Total energy = 4004.9561 kcal/mol (3995.3642 without restraints) Performing minimization step: 3932. Total energy = 4004.2738 kcal/mol (3994.6850 without restraints) Performing minimization step: 3933. Total energy = 4003.5928 kcal/mol (3994.0070 without restraints) Performing minimization step: 3934. Total energy = 4002.9116 kcal/mol (3993.3289 without restraints) Performing minimization step: 3935. Total energy = 4002.2310 kcal/mol (3992.6513 without restraints) Performing minimization step: 3936. Total energy = 4001.5508 kcal/mol (3991.9743 without restraints) Performing minimization step: 3937. Total energy = 4000.8709 kcal/mol (3991.2973 without restraints) Performing minimization step: 3938. Total energy = 4000.1920 kcal/mol (3990.6214 without restraints) Performing minimization step: 3939. Total energy = 3999.5130 kcal/mol (3989.9454 without restraints) Performing minimization step: 3940. Total energy = 3998.8349 kcal/mol (3989.2704 without restraints) Performing minimization step: 3941. Total energy = 3998.1573 kcal/mol (3988.5959 without restraints) Performing minimization step: 3942. Total energy = 3997.4801 kcal/mol (3987.9217 without restraints) Performing minimization step: 3943. Total energy = 3996.8040 kcal/mol (3987.2487 without restraints) Performing minimization step: 3944. Total energy = 3996.1280 kcal/mol (3986.5757 without restraints) Performing minimization step: 3945. Total energy = 3995.4525 kcal/mol (3985.9031 without restraints) Performing minimization step: 3946. Total energy = 3994.7772 kcal/mol (3985.2309 without restraints) Performing minimization step: 3947. Total energy = 3994.1025 kcal/mol (3984.5592 without restraints) Performing minimization step: 3948. Total energy = 3993.4282 kcal/mol (3983.8880 without restraints) Performing minimization step: 3949. Total energy = 3992.7547 kcal/mol (3983.2174 without restraints) Performing minimization step: 3950. Total energy = 3992.0815 kcal/mol (3982.5474 without restraints) Performing minimization step: 3951. Total energy = 3991.4092 kcal/mol (3981.8780 without restraints) Performing minimization step: 3952. Total energy = 3990.7370 kcal/mol (3981.2088 without restraints) Performing minimization step: 3953. Total energy = 3990.0657 kcal/mol (3980.5406 without restraints) Performing minimization step: 3954. Total energy = 3989.3949 kcal/mol (3979.8728 without restraints) Performing minimization step: 3955. Total energy = 3988.7249 kcal/mol (3979.2058 without restraints) Performing minimization step: 3956. Total energy = 3988.0548 kcal/mol (3978.5388 without restraints) Performing minimization step: 3957. Total energy = 3987.3853 kcal/mol (3977.8722 without restraints) Performing minimization step: 3958. Total energy = 3986.7159 kcal/mol (3977.2059 without restraints) Performing minimization step: 3959. Total energy = 3986.0468 kcal/mol (3976.5398 without restraints) Performing minimization step: 3960. Total energy = 3985.3787 kcal/mol (3975.8747 without restraints) Performing minimization step: 3961. Total energy = 3984.7111 kcal/mol (3975.2100 without restraints) Performing minimization step: 3962. Total energy = 3984.0439 kcal/mol (3974.5459 without restraints) Performing minimization step: 3963. Total energy = 3983.3771 kcal/mol (3973.8821 without restraints) Performing minimization step: 3964. Total energy = 3982.7108 kcal/mol (3973.2188 without restraints) Performing minimization step: 3965. Total energy = 3982.0452 kcal/mol (3972.5563 without restraints) Performing minimization step: 3966. Total energy = 3981.3797 kcal/mol (3971.8937 without restraints) Performing minimization step: 3967. Total energy = 3980.7150 kcal/mol (3971.2320 without restraints) Performing minimization step: 3968. Total energy = 3980.0508 kcal/mol (3970.5708 without restraints) Performing minimization step: 3969. Total energy = 3979.3873 kcal/mol (3969.9104 without restraints) Performing minimization step: 3970. Total energy = 3978.7243 kcal/mol (3969.2503 without restraints) Performing minimization step: 3971. Total energy = 3978.0618 kcal/mol (3968.5908 without restraints) Performing minimization step: 3972. Total energy = 3977.3994 kcal/mol (3967.9314 without restraints) Performing minimization step: 3973. Total energy = 3976.7375 kcal/mol (3967.2725 without restraints) Performing minimization step: 3974. Total energy = 3976.0760 kcal/mol (3966.6140 without restraints) Performing minimization step: 3975. Total energy = 3975.4152 kcal/mol (3965.9563 without restraints) Performing minimization step: 3976. Total energy = 3974.7550 kcal/mol (3965.2990 without restraints) Performing minimization step: 3977. Total energy = 3974.0951 kcal/mol (3964.6421 without restraints) Performing minimization step: 3978. Total energy = 3973.4358 kcal/mol (3963.9859 without restraints) Performing minimization step: 3979. Total energy = 3972.7774 kcal/mol (3963.3304 without restraints) Performing minimization step: 3980. Total energy = 3972.1192 kcal/mol (3962.6752 without restraints) Performing minimization step: 3981. Total energy = 3971.4613 kcal/mol (3962.0202 without restraints) Performing minimization step: 3982. Total energy = 3970.8046 kcal/mol (3961.3665 without restraints) Performing minimization step: 3983. Total energy = 3970.1475 kcal/mol (3960.7124 without restraints) Performing minimization step: 3984. Total energy = 3969.4914 kcal/mol (3960.0592 without restraints) Performing minimization step: 3985. Total energy = 3968.8353 kcal/mol (3959.4061 without restraints) Performing minimization step: 3986. Total energy = 3968.1799 kcal/mol (3958.7537 without restraints) Performing minimization step: 3987. Total energy = 3967.5247 kcal/mol (3958.1015 without restraints) Performing minimization step: 3988. Total energy = 3966.8702 kcal/mol (3957.4500 without restraints) Performing minimization step: 3989. Total energy = 3966.2161 kcal/mol (3956.7990 without restraints) Performing minimization step: 3990. Total energy = 3965.5628 kcal/mol (3956.1485 without restraints) Performing minimization step: 3991. Total energy = 3964.9097 kcal/mol (3955.4984 without restraints) Performing minimization step: 3992. Total energy = 3964.2567 kcal/mol (3954.8484 without restraints) Performing minimization step: 3993. Total energy = 3963.6046 kcal/mol (3954.1993 without restraints) Performing minimization step: 3994. Total energy = 3962.9529 kcal/mol (3953.5505 without restraints) Performing minimization step: 3995. Total energy = 3962.3015 kcal/mol (3952.9021 without restraints) Performing minimization step: 3996. Total energy = 3961.6507 kcal/mol (3952.2543 without restraints) Performing minimization step: 3997. Total energy = 3961.0007 kcal/mol (3951.6072 without restraints) Performing minimization step: 3998. Total energy = 3960.3510 kcal/mol (3950.9605 without restraints) Performing minimization step: 3999. Total energy = 3959.7020 kcal/mol (3950.3145 without restraints) Performing minimization step: 4000. Total energy = 3959.0532 kcal/mol (3949.6686 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 3958.4052 kcal/mol (3949.0236 without restraints) Performing minimization step: 4002. Total energy = 3957.7579 kcal/mol (3948.3793 without restraints) Performing minimization step: 4003. Total energy = 3957.1106 kcal/mol (3947.7349 without restraints) Performing minimization step: 4004. Total energy = 3956.4638 kcal/mol (3947.0911 without restraints) Performing minimization step: 4005. Total energy = 3955.8176 kcal/mol (3946.4478 without restraints) Performing minimization step: 4006. Total energy = 3955.1715 kcal/mol (3945.8047 without restraints) Performing minimization step: 4007. Total energy = 3954.5260 kcal/mol (3945.1621 without restraints) Performing minimization step: 4008. Total energy = 3953.8807 kcal/mol (3944.5197 without restraints) Performing minimization step: 4009. Total energy = 3953.2362 kcal/mol (3943.8782 without restraints) Performing minimization step: 4010. Total energy = 3952.5923 kcal/mol (3943.2373 without restraints) Performing minimization step: 4011. Total energy = 3951.9486 kcal/mol (3942.5965 without restraints) Performing minimization step: 4012. Total energy = 3951.3053 kcal/mol (3941.9562 without restraints) Performing minimization step: 4013. Total energy = 3950.6625 kcal/mol (3941.3163 without restraints) Performing minimization step: 4014. Total energy = 3950.0204 kcal/mol (3940.6771 without restraints) Performing minimization step: 4015. Total energy = 3949.3784 kcal/mol (3940.0381 without restraints) Performing minimization step: 4016. Total energy = 3948.7373 kcal/mol (3939.4001 without restraints) Performing minimization step: 4017. Total energy = 3948.0964 kcal/mol (3938.7620 without restraints) Performing minimization step: 4018. Total energy = 3947.4560 kcal/mol (3938.1244 without restraints) Performing minimization step: 4019. Total energy = 3946.8159 kcal/mol (3937.4874 without restraints) Performing minimization step: 4020. Total energy = 3946.1767 kcal/mol (3936.8511 without restraints) Performing minimization step: 4021. Total energy = 3945.5383 kcal/mol (3936.2158 without restraints) Performing minimization step: 4022. Total energy = 3944.9001 kcal/mol (3935.5804 without restraints) Performing minimization step: 4023. Total energy = 3944.2623 kcal/mol (3934.9455 without restraints) Performing minimization step: 4024. Total energy = 3943.6246 kcal/mol (3934.3107 without restraints) Performing minimization step: 4025. Total energy = 3942.9871 kcal/mol (3933.6761 without restraints) Performing minimization step: 4026. Total energy = 3942.3505 kcal/mol (3933.0425 without restraints) Performing minimization step: 4027. Total energy = 3941.7142 kcal/mol (3932.4090 without restraints) Performing minimization step: 4028. Total energy = 3941.0781 kcal/mol (3931.7759 without restraints) Performing minimization step: 4029. Total energy = 3940.4427 kcal/mol (3931.1435 without restraints) Performing minimization step: 4030. Total energy = 3939.8079 kcal/mol (3930.5117 without restraints) Performing minimization step: 4031. Total energy = 3939.1733 kcal/mol (3929.8799 without restraints) Performing minimization step: 4032. Total energy = 3938.5393 kcal/mol (3929.2488 without restraints) Performing minimization step: 4033. Total energy = 3937.9058 kcal/mol (3928.6182 without restraints) Performing minimization step: 4034. Total energy = 3937.2726 kcal/mol (3927.9880 without restraints) Performing minimization step: 4035. Total energy = 3936.6398 kcal/mol (3927.3580 without restraints) Performing minimization step: 4036. Total energy = 3936.0076 kcal/mol (3926.7288 without restraints) Performing minimization step: 4037. Total energy = 3935.3763 kcal/mol (3926.1004 without restraints) Performing minimization step: 4038. Total energy = 3934.7453 kcal/mol (3925.4723 without restraints) Performing minimization step: 4039. Total energy = 3934.1145 kcal/mol (3924.8446 without restraints) Performing minimization step: 4040. Total energy = 3933.4845 kcal/mol (3924.2173 without restraints) Performing minimization step: 4041. Total energy = 3932.8545 kcal/mol (3923.5902 without restraints) Performing minimization step: 4042. Total energy = 3932.2250 kcal/mol (3922.9637 without restraints) Performing minimization step: 4043. Total energy = 3931.5962 kcal/mol (3922.3378 without restraints) Performing minimization step: 4044. Total energy = 3930.9683 kcal/mol (3921.7130 without restraints) Performing minimization step: 4045. Total energy = 3930.3406 kcal/mol (3921.0880 without restraints) Performing minimization step: 4046. Total energy = 3929.7133 kcal/mol (3920.4636 without restraints) Performing minimization step: 4047. Total energy = 3929.0863 kcal/mol (3919.8394 without restraints) Performing minimization step: 4048. Total energy = 3928.4597 kcal/mol (3919.2158 without restraints) Performing minimization step: 4049. Total energy = 3927.8334 kcal/mol (3918.5925 without restraints) Performing minimization step: 4050. Total energy = 3927.2076 kcal/mol (3917.9695 without restraints) Performing minimization step: 4051. Total energy = 3926.5825 kcal/mol (3917.3473 without restraints) Performing minimization step: 4052. Total energy = 3925.9578 kcal/mol (3916.7255 without restraints) Performing minimization step: 4053. Total energy = 3925.3337 kcal/mol (3916.1042 without restraints) Performing minimization step: 4054. Total energy = 3924.7096 kcal/mol (3915.4832 without restraints) Performing minimization step: 4055. Total energy = 3924.0863 kcal/mol (3914.8629 without restraints) Performing minimization step: 4056. Total energy = 3923.4634 kcal/mol (3914.2427 without restraints) Performing minimization step: 4057. Total energy = 3922.8407 kcal/mol (3913.6228 without restraints) Performing minimization step: 4058. Total energy = 3922.2186 kcal/mol (3913.0037 without restraints) Performing minimization step: 4059. Total energy = 3921.5969 kcal/mol (3912.3846 without restraints) Performing minimization step: 4060. Total energy = 3920.9754 kcal/mol (3911.7663 without restraints) Performing minimization step: 4061. Total energy = 3920.3545 kcal/mol (3911.1482 without restraints) Performing minimization step: 4062. Total energy = 3919.7342 kcal/mol (3910.5309 without restraints) Performing minimization step: 4063. Total energy = 3919.1145 kcal/mol (3909.9140 without restraints) Performing minimization step: 4064. Total energy = 3918.4951 kcal/mol (3909.2975 without restraints) Performing minimization step: 4065. Total energy = 3917.8760 kcal/mol (3908.6812 without restraints) Performing minimization step: 4066. Total energy = 3917.2576 kcal/mol (3908.0657 without restraints) Performing minimization step: 4067. Total energy = 3916.6396 kcal/mol (3907.4506 without restraints) Performing minimization step: 4068. Total energy = 3916.0219 kcal/mol (3906.8357 without restraints) Performing minimization step: 4069. Total energy = 3915.4049 kcal/mol (3906.2216 without restraints) Performing minimization step: 4070. Total energy = 3914.7879 kcal/mol (3905.6075 without restraints) Performing minimization step: 4071. Total energy = 3914.1717 kcal/mol (3904.9942 without restraints) Performing minimization step: 4072. Total energy = 3913.5557 kcal/mol (3904.3811 without restraints) Performing minimization step: 4073. Total energy = 3912.9409 kcal/mol (3903.7691 without restraints) Performing minimization step: 4074. Total energy = 3912.3258 kcal/mol (3903.1568 without restraints) Performing minimization step: 4075. Total energy = 3911.7114 kcal/mol (3902.5453 without restraints) Performing minimization step: 4076. Total energy = 3911.0972 kcal/mol (3901.9340 without restraints) Performing minimization step: 4077. Total energy = 3910.4833 kcal/mol (3901.3229 without restraints) Performing minimization step: 4078. Total energy = 3909.8702 kcal/mol (3900.7128 without restraints) Performing minimization step: 4079. Total energy = 3909.2573 kcal/mol (3900.1027 without restraints) Performing minimization step: 4080. Total energy = 3908.6449 kcal/mol (3899.4933 without restraints) Performing minimization step: 4081. Total energy = 3908.0328 kcal/mol (3898.8839 without restraints) Performing minimization step: 4082. Total energy = 3907.4215 kcal/mol (3898.2755 without restraints) Performing minimization step: 4083. Total energy = 3906.8104 kcal/mol (3897.6672 without restraints) Performing minimization step: 4084. Total energy = 3906.1997 kcal/mol (3897.0595 without restraints) Performing minimization step: 4085. Total energy = 3905.5898 kcal/mol (3896.4523 without restraints) Performing minimization step: 4086. Total energy = 3904.9802 kcal/mol (3895.8456 without restraints) Performing minimization step: 4087. Total energy = 3904.3712 kcal/mol (3895.2394 without restraints) Performing minimization step: 4088. Total energy = 3903.7624 kcal/mol (3894.6334 without restraints) Performing minimization step: 4089. Total energy = 3903.1538 kcal/mol (3894.0277 without restraints) Performing minimization step: 4090. Total energy = 3902.5460 kcal/mol (3893.4228 without restraints) Performing minimization step: 4091. Total energy = 3901.9384 kcal/mol (3892.8180 without restraints) Performing minimization step: 4092. Total energy = 3901.3311 kcal/mol (3892.2136 without restraints) Performing minimization step: 4093. Total energy = 3900.7245 kcal/mol (3891.6098 without restraints) Performing minimization step: 4094. Total energy = 3900.1182 kcal/mol (3891.0064 without restraints) Performing minimization step: 4095. Total energy = 3899.5125 kcal/mol (3890.4034 without restraints) Performing minimization step: 4096. Total energy = 3898.9072 kcal/mol (3889.8012 without restraints) Performing minimization step: 4097. Total energy = 3898.3024 kcal/mol (3889.1992 without restraints) Performing minimization step: 4098. Total energy = 3897.6976 kcal/mol (3888.5971 without restraints) Performing minimization step: 4099. Total energy = 3897.0933 kcal/mol (3887.9956 without restraints) Performing minimization step: 4100. Total energy = 3896.4897 kcal/mol (3887.3950 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 3895.8864 kcal/mol (3886.7944 without restraints) Performing minimization step: 4102. Total energy = 3895.2836 kcal/mol (3886.1945 without restraints) Performing minimization step: 4103. Total energy = 3894.6811 kcal/mol (3885.5948 without restraints) Performing minimization step: 4104. Total energy = 3894.0792 kcal/mol (3884.9957 without restraints) Performing minimization step: 4105. Total energy = 3893.4777 kcal/mol (3884.3969 without restraints) Performing minimization step: 4106. Total energy = 3892.8760 kcal/mol (3883.7980 without restraints) Performing minimization step: 4107. Total energy = 3892.2751 kcal/mol (3883.2000 without restraints) Performing minimization step: 4108. Total energy = 3891.6749 kcal/mol (3882.6026 without restraints) Performing minimization step: 4109. Total energy = 3891.0748 kcal/mol (3882.0054 without restraints) Performing minimization step: 4110. Total energy = 3890.4757 kcal/mol (3881.4091 without restraints) Performing minimization step: 4111. Total energy = 3889.8769 kcal/mol (3880.8132 without restraints) Performing minimization step: 4112. Total energy = 3889.2787 kcal/mol (3880.2178 without restraints) Performing minimization step: 4113. Total energy = 3888.6807 kcal/mol (3879.6226 without restraints) Performing minimization step: 4114. Total energy = 3888.0830 kcal/mol (3879.0277 without restraints) Performing minimization step: 4115. Total energy = 3887.4860 kcal/mol (3878.4335 without restraints) Performing minimization step: 4116. Total energy = 3886.8887 kcal/mol (3877.8391 without restraints) Performing minimization step: 4117. Total energy = 3886.2922 kcal/mol (3877.2454 without restraints) Performing minimization step: 4118. Total energy = 3885.6961 kcal/mol (3876.6521 without restraints) Performing minimization step: 4119. Total energy = 3885.1005 kcal/mol (3876.0592 without restraints) Performing minimization step: 4120. Total energy = 3884.5054 kcal/mol (3875.4669 without restraints) Performing minimization step: 4121. Total energy = 3883.9105 kcal/mol (3874.8750 without restraints) Performing minimization step: 4122. Total energy = 3883.3165 kcal/mol (3874.2836 without restraints) Performing minimization step: 4123. Total energy = 3882.7230 kcal/mol (3873.6929 without restraints) Performing minimization step: 4124. Total energy = 3882.1295 kcal/mol (3873.1024 without restraints) Performing minimization step: 4125. Total energy = 3881.5365 kcal/mol (3872.5121 without restraints) Performing minimization step: 4126. Total energy = 3880.9439 kcal/mol (3871.9223 without restraints) Performing minimization step: 4127. Total energy = 3880.3516 kcal/mol (3871.3328 without restraints) Performing minimization step: 4128. Total energy = 3879.7597 kcal/mol (3870.7437 without restraints) Performing minimization step: 4129. Total energy = 3879.1684 kcal/mol (3870.1551 without restraints) Performing minimization step: 4130. Total energy = 3878.5778 kcal/mol (3869.5673 without restraints) Performing minimization step: 4131. Total energy = 3877.9876 kcal/mol (3868.9799 without restraints) Performing minimization step: 4132. Total energy = 3877.3974 kcal/mol (3868.3926 without restraints) Performing minimization step: 4133. Total energy = 3876.8079 kcal/mol (3867.8059 without restraints) Performing minimization step: 4134. Total energy = 3876.2188 kcal/mol (3867.2196 without restraints) Performing minimization step: 4135. Total energy = 3875.6298 kcal/mol (3866.6332 without restraints) Performing minimization step: 4136. Total energy = 3875.0412 kcal/mol (3866.0475 without restraints) Performing minimization step: 4137. Total energy = 3874.4531 kcal/mol (3865.4622 without restraints) Performing minimization step: 4138. Total energy = 3873.8656 kcal/mol (3864.8775 without restraints) Performing minimization step: 4139. Total energy = 3873.2786 kcal/mol (3864.2932 without restraints) Performing minimization step: 4140. Total energy = 3872.6920 kcal/mol (3863.7094 without restraints) Performing minimization step: 4141. Total energy = 3872.1057 kcal/mol (3863.1259 without restraints) Performing minimization step: 4142. Total energy = 3871.5196 kcal/mol (3862.5427 without restraints) Performing minimization step: 4143. Total energy = 3870.9342 kcal/mol (3861.9600 without restraints) Performing minimization step: 4144. Total energy = 3870.3494 kcal/mol (3861.3780 without restraints) Performing minimization step: 4145. Total energy = 3869.7646 kcal/mol (3860.7960 without restraints) Performing minimization step: 4146. Total energy = 3869.1805 kcal/mol (3860.2147 without restraints) Performing minimization step: 4147. Total energy = 3868.5969 kcal/mol (3859.6338 without restraints) Performing minimization step: 4148. Total energy = 3868.0138 kcal/mol (3859.0535 without restraints) Performing minimization step: 4149. Total energy = 3867.4310 kcal/mol (3858.4735 without restraints) Performing minimization step: 4150. Total energy = 3866.8484 kcal/mol (3857.8937 without restraints) Performing minimization step: 4151. Total energy = 3866.2669 kcal/mol (3857.3150 without restraints) Performing minimization step: 4152. Total energy = 3865.6851 kcal/mol (3856.7358 without restraints) Performing minimization step: 4153. Total energy = 3865.1040 kcal/mol (3856.1575 without restraints) Performing minimization step: 4154. Total energy = 3864.5227 kcal/mol (3855.5789 without restraints) Performing minimization step: 4155. Total energy = 3863.9420 kcal/mol (3855.0010 without restraints) Performing minimization step: 4156. Total energy = 3863.3621 kcal/mol (3854.4240 without restraints) Performing minimization step: 4157. Total energy = 3862.7827 kcal/mol (3853.8474 without restraints) Performing minimization step: 4158. Total energy = 3862.2041 kcal/mol (3853.2715 without restraints) Performing minimization step: 4159. Total energy = 3861.6259 kcal/mol (3852.6961 without restraints) Performing minimization step: 4160. Total energy = 3861.0478 kcal/mol (3852.1207 without restraints) Performing minimization step: 4161. Total energy = 3860.4699 kcal/mol (3851.5456 without restraints) Performing minimization step: 4162. Total energy = 3859.8922 kcal/mol (3850.9706 without restraints) Performing minimization step: 4163. Total energy = 3859.3152 kcal/mol (3850.3963 without restraints) Performing minimization step: 4164. Total energy = 3858.7388 kcal/mol (3849.8227 without restraints) Performing minimization step: 4165. Total energy = 3858.1623 kcal/mol (3849.2489 without restraints) Performing minimization step: 4166. Total energy = 3857.5863 kcal/mol (3848.6757 without restraints) Performing minimization step: 4167. Total energy = 3857.0110 kcal/mol (3848.1030 without restraints) Performing minimization step: 4168. Total energy = 3856.4360 kcal/mol (3847.5308 without restraints) Performing minimization step: 4169. Total energy = 3855.8613 kcal/mol (3846.9588 without restraints) Performing minimization step: 4170. Total energy = 3855.2867 kcal/mol (3846.3870 without restraints) Performing minimization step: 4171. Total energy = 3854.7125 kcal/mol (3845.8156 without restraints) Performing minimization step: 4172. Total energy = 3854.1390 kcal/mol (3845.2447 without restraints) Performing minimization step: 4173. Total energy = 3853.5657 kcal/mol (3844.6743 without restraints) Performing minimization step: 4174. Total energy = 3852.9932 kcal/mol (3844.1045 without restraints) Performing minimization step: 4175. Total energy = 3852.4207 kcal/mol (3843.5347 without restraints) Performing minimization step: 4176. Total energy = 3851.8488 kcal/mol (3842.9655 without restraints) Performing minimization step: 4177. Total energy = 3851.2775 kcal/mol (3842.3969 without restraints) Performing minimization step: 4178. Total energy = 3850.7064 kcal/mol (3841.8287 without restraints) Performing minimization step: 4179. Total energy = 3850.1358 kcal/mol (3841.2607 without restraints) Performing minimization step: 4180. Total energy = 3849.5654 kcal/mol (3840.6930 without restraints) Performing minimization step: 4181. Total energy = 3848.9953 kcal/mol (3840.1256 without restraints) Performing minimization step: 4182. Total energy = 3848.4261 kcal/mol (3839.5592 without restraints) Performing minimization step: 4183. Total energy = 3847.8571 kcal/mol (3838.9929 without restraints) Performing minimization step: 4184. Total energy = 3847.2883 kcal/mol (3838.4268 without restraints) Performing minimization step: 4185. Total energy = 3846.7201 kcal/mol (3837.8613 without restraints) Performing minimization step: 4186. Total energy = 3846.1520 kcal/mol (3837.2960 without restraints) Performing minimization step: 4187. Total energy = 3845.5846 kcal/mol (3836.7314 without restraints) Performing minimization step: 4188. Total energy = 3845.0173 kcal/mol (3836.1667 without restraints) Performing minimization step: 4189. Total energy = 3844.4507 kcal/mol (3835.6030 without restraints) Performing minimization step: 4190. Total energy = 3843.8850 kcal/mol (3835.0400 without restraints) Performing minimization step: 4191. Total energy = 3843.3193 kcal/mol (3834.4770 without restraints) Performing minimization step: 4192. Total energy = 3842.7540 kcal/mol (3833.9143 without restraints) Performing minimization step: 4193. Total energy = 3842.1887 kcal/mol (3833.3517 without restraints) Performing minimization step: 4194. Total energy = 3841.6240 kcal/mol (3832.7897 without restraints) Performing minimization step: 4195. Total energy = 3841.0604 kcal/mol (3832.2288 without restraints) Performing minimization step: 4196. Total energy = 3840.4962 kcal/mol (3831.6672 without restraints) Performing minimization step: 4197. Total energy = 3839.9330 kcal/mol (3831.1067 without restraints) Performing minimization step: 4198. Total energy = 3839.3701 kcal/mol (3830.5467 without restraints) Performing minimization step: 4199. Total energy = 3838.8072 kcal/mol (3829.9865 without restraints) Performing minimization step: 4200. Total energy = 3838.2450 kcal/mol (3829.4270 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 3837.6829 kcal/mol (3828.8676 without restraints) Performing minimization step: 4202. Total energy = 3837.1216 kcal/mol (3828.3089 without restraints) Performing minimization step: 4203. Total energy = 3836.5604 kcal/mol (3827.7504 without restraints) Performing minimization step: 4204. Total energy = 3835.9997 kcal/mol (3827.1925 without restraints) Performing minimization step: 4205. Total energy = 3835.4394 kcal/mol (3826.6348 without restraints) Performing minimization step: 4206. Total energy = 3834.8792 kcal/mol (3826.0773 without restraints) Performing minimization step: 4207. Total energy = 3834.3194 kcal/mol (3825.5202 without restraints) Performing minimization step: 4208. Total energy = 3833.7602 kcal/mol (3824.9637 without restraints) Performing minimization step: 4209. Total energy = 3833.2013 kcal/mol (3824.4076 without restraints) Performing minimization step: 4210. Total energy = 3832.6427 kcal/mol (3823.8516 without restraints) Performing minimization step: 4211. Total energy = 3832.0846 kcal/mol (3823.2962 without restraints) Performing minimization step: 4212. Total energy = 3831.5270 kcal/mol (3822.7413 without restraints) Performing minimization step: 4213. Total energy = 3830.9700 kcal/mol (3822.1869 without restraints) Performing minimization step: 4214. Total energy = 3830.4132 kcal/mol (3821.6331 without restraints) Performing minimization step: 4215. Total energy = 3829.8568 kcal/mol (3821.0792 without restraints) Performing minimization step: 4216. Total energy = 3829.3008 kcal/mol (3820.5258 without restraints) Performing minimization step: 4217. Total energy = 3828.7450 kcal/mol (3819.9726 without restraints) Performing minimization step: 4218. Total energy = 3828.1899 kcal/mol (3819.4203 without restraints) Performing minimization step: 4219. Total energy = 3827.6346 kcal/mol (3818.8676 without restraints) Performing minimization step: 4220. Total energy = 3827.0804 kcal/mol (3818.3161 without restraints) Performing minimization step: 4221. Total energy = 3826.5261 kcal/mol (3817.7645 without restraints) Performing minimization step: 4222. Total energy = 3825.9724 kcal/mol (3817.2135 without restraints) Performing minimization step: 4223. Total energy = 3825.4188 kcal/mol (3816.6625 without restraints) Performing minimization step: 4224. Total energy = 3824.8660 kcal/mol (3816.1125 without restraints) Performing minimization step: 4225. Total energy = 3824.3136 kcal/mol (3815.5626 without restraints) Performing minimization step: 4226. Total energy = 3823.7613 kcal/mol (3815.0130 without restraints) Performing minimization step: 4227. Total energy = 3823.2093 kcal/mol (3814.4637 without restraints) Performing minimization step: 4228. Total energy = 3822.6579 kcal/mol (3813.9149 without restraints) Performing minimization step: 4229. Total energy = 3822.1069 kcal/mol (3813.3666 without restraints) Performing minimization step: 4230. Total energy = 3821.5566 kcal/mol (3812.8190 without restraints) Performing minimization step: 4231. Total energy = 3821.0062 kcal/mol (3812.2713 without restraints) Performing minimization step: 4232. Total energy = 3820.4562 kcal/mol (3811.7238 without restraints) Performing minimization step: 4233. Total energy = 3819.9066 kcal/mol (3811.1770 without restraints) Performing minimization step: 4234. Total energy = 3819.3575 kcal/mol (3810.6306 without restraints) Performing minimization step: 4235. Total energy = 3818.8085 kcal/mol (3810.0842 without restraints) Performing minimization step: 4236. Total energy = 3818.2600 kcal/mol (3809.5383 without restraints) Performing minimization step: 4237. Total energy = 3817.7118 kcal/mol (3808.9928 without restraints) Performing minimization step: 4238. Total energy = 3817.1648 kcal/mol (3808.4485 without restraints) Performing minimization step: 4239. Total energy = 3816.6180 kcal/mol (3807.9043 without restraints) Performing minimization step: 4240. Total energy = 3816.0712 kcal/mol (3807.3601 without restraints) Performing minimization step: 4241. Total energy = 3815.5248 kcal/mol (3806.8164 without restraints) Performing minimization step: 4242. Total energy = 3814.9788 kcal/mol (3806.2732 without restraints) Performing minimization step: 4243. Total energy = 3814.4336 kcal/mol (3805.7304 without restraints) Performing minimization step: 4244. Total energy = 3813.8888 kcal/mol (3805.1884 without restraints) Performing minimization step: 4245. Total energy = 3813.3441 kcal/mol (3804.6462 without restraints) Performing minimization step: 4246. Total energy = 3812.7992 kcal/mol (3804.1039 without restraints) Performing minimization step: 4247. Total energy = 3812.2550 kcal/mol (3803.5624 without restraints) Performing minimization step: 4248. Total energy = 3811.7110 kcal/mol (3803.0211 without restraints) Performing minimization step: 4249. Total energy = 3811.1675 kcal/mol (3802.4802 without restraints) Performing minimization step: 4250. Total energy = 3810.6248 kcal/mol (3801.9401 without restraints) Performing minimization step: 4251. Total energy = 3810.0823 kcal/mol (3801.4003 without restraints) Performing minimization step: 4252. Total energy = 3809.5405 kcal/mol (3800.8610 without restraints) Performing minimization step: 4253. Total energy = 3808.9985 kcal/mol (3800.3217 without restraints) Performing minimization step: 4254. Total energy = 3808.4568 kcal/mol (3799.7826 without restraints) Performing minimization step: 4255. Total energy = 3807.9155 kcal/mol (3799.2440 without restraints) Performing minimization step: 4256. Total energy = 3807.3753 kcal/mol (3798.7064 without restraints) Performing minimization step: 4257. Total energy = 3806.8349 kcal/mol (3798.1684 without restraints) Performing minimization step: 4258. Total energy = 3806.2950 kcal/mol (3797.6314 without restraints) Performing minimization step: 4259. Total energy = 3805.7551 kcal/mol (3797.0940 without restraints) Performing minimization step: 4260. Total energy = 3805.2156 kcal/mol (3796.5572 without restraints) Performing minimization step: 4261. Total energy = 3804.6767 kcal/mol (3796.0208 without restraints) Performing minimization step: 4262. Total energy = 3804.1381 kcal/mol (3795.4851 without restraints) Performing minimization step: 4263. Total energy = 3803.6006 kcal/mol (3794.9499 without restraints) Performing minimization step: 4264. Total energy = 3803.0626 kcal/mol (3794.4147 without restraints) Performing minimization step: 4265. Total energy = 3802.5249 kcal/mol (3793.8796 without restraints) Performing minimization step: 4266. Total energy = 3801.9880 kcal/mol (3793.3453 without restraints) Performing minimization step: 4267. Total energy = 3801.4511 kcal/mol (3792.8109 without restraints) Performing minimization step: 4268. Total energy = 3800.9147 kcal/mol (3792.2772 without restraints) Performing minimization step: 4269. Total energy = 3800.3791 kcal/mol (3791.7442 without restraints) Performing minimization step: 4270. Total energy = 3799.8437 kcal/mol (3791.2113 without restraints) Performing minimization step: 4271. Total energy = 3799.3086 kcal/mol (3790.6789 without restraints) Performing minimization step: 4272. Total energy = 3798.7738 kcal/mol (3790.1468 without restraints) Performing minimization step: 4273. Total energy = 3798.2399 kcal/mol (3789.6155 without restraints) Performing minimization step: 4274. Total energy = 3797.7061 kcal/mol (3789.0842 without restraints) Performing minimization step: 4275. Total energy = 3797.1723 kcal/mol (3788.5530 without restraints) Performing minimization step: 4276. Total energy = 3796.6389 kcal/mol (3788.0222 without restraints) Performing minimization step: 4277. Total energy = 3796.1059 kcal/mol (3787.4919 without restraints) Performing minimization step: 4278. Total energy = 3795.5735 kcal/mol (3786.9621 without restraints) Performing minimization step: 4279. Total energy = 3795.0413 kcal/mol (3786.4324 without restraints) Performing minimization step: 4280. Total energy = 3794.5094 kcal/mol (3785.9031 without restraints) Performing minimization step: 4281. Total energy = 3793.9779 kcal/mol (3785.3742 without restraints) Performing minimization step: 4282. Total energy = 3793.4467 kcal/mol (3784.8455 without restraints) Performing minimization step: 4283. Total energy = 3792.9161 kcal/mol (3784.3177 without restraints) Performing minimization step: 4284. Total energy = 3792.3862 kcal/mol (3783.7903 without restraints) Performing minimization step: 4285. Total energy = 3791.8561 kcal/mol (3783.2626 without restraints) Performing minimization step: 4286. Total energy = 3791.3262 kcal/mol (3782.7355 without restraints) Performing minimization step: 4287. Total energy = 3790.7971 kcal/mol (3782.2089 without restraints) Performing minimization step: 4288. Total energy = 3790.2684 kcal/mol (3781.6831 without restraints) Performing minimization step: 4289. Total energy = 3789.7401 kcal/mol (3781.1571 without restraints) Performing minimization step: 4290. Total energy = 3789.2120 kcal/mol (3780.6316 without restraints) Performing minimization step: 4291. Total energy = 3788.6842 kcal/mol (3780.1063 without restraints) Performing minimization step: 4292. Total energy = 3788.1567 kcal/mol (3779.5814 without restraints) Performing minimization step: 4293. Total energy = 3787.6297 kcal/mol (3779.0570 without restraints) Performing minimization step: 4294. Total energy = 3787.1029 kcal/mol (3778.5328 without restraints) Performing minimization step: 4295. Total energy = 3786.5766 kcal/mol (3778.0090 without restraints) Performing minimization step: 4296. Total energy = 3786.0508 kcal/mol (3777.4857 without restraints) Performing minimization step: 4297. Total energy = 3785.5253 kcal/mol (3776.9629 without restraints) Performing minimization step: 4298. Total energy = 3785.0005 kcal/mol (3776.4407 without restraints) Performing minimization step: 4299. Total energy = 3784.4756 kcal/mol (3775.9182 without restraints) Performing minimization step: 4300. Total energy = 3783.9506 kcal/mol (3775.3959 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 3783.4262 kcal/mol (3774.8741 without restraints) Performing minimization step: 4302. Total energy = 3782.9025 kcal/mol (3774.3530 without restraints) Performing minimization step: 4303. Total energy = 3782.3795 kcal/mol (3773.8324 without restraints) Performing minimization step: 4304. Total energy = 3781.8563 kcal/mol (3773.3118 without restraints) Performing minimization step: 4305. Total energy = 3781.3333 kcal/mol (3772.7914 without restraints) Performing minimization step: 4306. Total energy = 3780.8111 kcal/mol (3772.2718 without restraints) Performing minimization step: 4307. Total energy = 3780.2894 kcal/mol (3771.7526 without restraints) Performing minimization step: 4308. Total energy = 3779.7681 kcal/mol (3771.2339 without restraints) Performing minimization step: 4309. Total energy = 3779.2468 kcal/mol (3770.7151 without restraints) Performing minimization step: 4310. Total energy = 3778.7257 kcal/mol (3770.1965 without restraints) Performing minimization step: 4311. Total energy = 3778.2051 kcal/mol (3769.6785 without restraints) Performing minimization step: 4312. Total energy = 3777.6852 kcal/mol (3769.1613 without restraints) Performing minimization step: 4313. Total energy = 3777.1655 kcal/mol (3768.6440 without restraints) Performing minimization step: 4314. Total energy = 3776.6464 kcal/mol (3768.1274 without restraints) Performing minimization step: 4315. Total energy = 3776.1274 kcal/mol (3767.6110 without restraints) Performing minimization step: 4316. Total energy = 3775.6086 kcal/mol (3767.0947 without restraints) Performing minimization step: 4317. Total energy = 3775.0900 kcal/mol (3766.5786 without restraints) Performing minimization step: 4318. Total energy = 3774.5720 kcal/mol (3766.0632 without restraints) Performing minimization step: 4319. Total energy = 3774.0540 kcal/mol (3765.5478 without restraints) Performing minimization step: 4320. Total energy = 3773.5367 kcal/mol (3765.0330 without restraints) Performing minimization step: 4321. Total energy = 3773.0197 kcal/mol (3764.5185 without restraints) Performing minimization step: 4322. Total energy = 3772.5028 kcal/mol (3764.0041 without restraints) Performing minimization step: 4323. Total energy = 3771.9865 kcal/mol (3763.4904 without restraints) Performing minimization step: 4324. Total energy = 3771.4706 kcal/mol (3762.9771 without restraints) Performing minimization step: 4325. Total energy = 3770.9553 kcal/mol (3762.4643 without restraints) Performing minimization step: 4326. Total energy = 3770.4408 kcal/mol (3761.9523 without restraints) Performing minimization step: 4327. Total energy = 3769.9260 kcal/mol (3761.4400 without restraints) Performing minimization step: 4328. Total energy = 3769.4119 kcal/mol (3760.9285 without restraints) Performing minimization step: 4329. Total energy = 3768.8979 kcal/mol (3760.4170 without restraints) Performing minimization step: 4330. Total energy = 3768.3842 kcal/mol (3759.9058 without restraints) Performing minimization step: 4331. Total energy = 3767.8712 kcal/mol (3759.3952 without restraints) Performing minimization step: 4332. Total energy = 3767.3589 kcal/mol (3758.8855 without restraints) Performing minimization step: 4333. Total energy = 3766.8461 kcal/mol (3758.3753 without restraints) Performing minimization step: 4334. Total energy = 3766.3336 kcal/mol (3757.8652 without restraints) Performing minimization step: 4335. Total energy = 3765.8220 kcal/mol (3757.3562 without restraints) Performing minimization step: 4336. Total energy = 3765.3106 kcal/mol (3756.8473 without restraints) Performing minimization step: 4337. Total energy = 3764.7993 kcal/mol (3756.3385 without restraints) Performing minimization step: 4338. Total energy = 3764.2883 kcal/mol (3755.8300 without restraints) Performing minimization step: 4339. Total energy = 3763.7781 kcal/mol (3755.3223 without restraints) Performing minimization step: 4340. Total energy = 3763.2681 kcal/mol (3754.8149 without restraints) Performing minimization step: 4341. Total energy = 3762.7583 kcal/mol (3754.3075 without restraints) Performing minimization step: 4342. Total energy = 3762.2490 kcal/mol (3753.8007 without restraints) Performing minimization step: 4343. Total energy = 3761.7398 kcal/mol (3753.2940 without restraints) Performing minimization step: 4344. Total energy = 3761.2312 kcal/mol (3752.7879 without restraints) Performing minimization step: 4345. Total energy = 3760.7226 kcal/mol (3752.2820 without restraints) Performing minimization step: 4346. Total energy = 3760.2148 kcal/mol (3751.7768 without restraints) Performing minimization step: 4347. Total energy = 3759.7072 kcal/mol (3751.2715 without restraints) Performing minimization step: 4348. Total energy = 3759.1999 kcal/mol (3750.7668 without restraints) Performing minimization step: 4349. Total energy = 3758.6932 kcal/mol (3750.2625 without restraints) Performing minimization step: 4350. Total energy = 3758.1866 kcal/mol (3749.7583 without restraints) Performing minimization step: 4351. Total energy = 3757.6802 kcal/mol (3749.2544 without restraints) Performing minimization step: 4352. Total energy = 3757.1745 kcal/mol (3748.7514 without restraints) Performing minimization step: 4353. Total energy = 3756.6692 kcal/mol (3748.2484 without restraints) Performing minimization step: 4354. Total energy = 3756.1637 kcal/mol (3747.7454 without restraints) Performing minimization step: 4355. Total energy = 3755.6585 kcal/mol (3747.2427 without restraints) Performing minimization step: 4356. Total energy = 3755.1541 kcal/mol (3746.7408 without restraints) Performing minimization step: 4357. Total energy = 3754.6499 kcal/mol (3746.2390 without restraints) Performing minimization step: 4358. Total energy = 3754.1459 kcal/mol (3745.7376 without restraints) Performing minimization step: 4359. Total energy = 3753.6427 kcal/mol (3745.2368 without restraints) Performing minimization step: 4360. Total energy = 3753.1396 kcal/mol (3744.7362 without restraints) Performing minimization step: 4361. Total energy = 3752.6367 kcal/mol (3744.2360 without restraints) Performing minimization step: 4362. Total energy = 3752.1344 kcal/mol (3743.7361 without restraints) Performing minimization step: 4363. Total energy = 3751.6326 kcal/mol (3743.2367 without restraints) Performing minimization step: 4364. Total energy = 3751.1308 kcal/mol (3742.7373 without restraints) Performing minimization step: 4365. Total energy = 3750.6297 kcal/mol (3742.2387 without restraints) Performing minimization step: 4366. Total energy = 3750.1286 kcal/mol (3741.7401 without restraints) Performing minimization step: 4367. Total energy = 3749.6282 kcal/mol (3741.2422 without restraints) Performing minimization step: 4368. Total energy = 3749.1279 kcal/mol (3740.7444 without restraints) Performing minimization step: 4369. Total energy = 3748.6278 kcal/mol (3740.2467 without restraints) Performing minimization step: 4370. Total energy = 3748.1284 kcal/mol (3739.7500 without restraints) Performing minimization step: 4371. Total energy = 3747.6299 kcal/mol (3739.2537 without restraints) Performing minimization step: 4372. Total energy = 3747.1312 kcal/mol (3738.7577 without restraints) Performing minimization step: 4373. Total energy = 3746.6327 kcal/mol (3738.2615 without restraints) Performing minimization step: 4374. Total energy = 3746.1343 kcal/mol (3737.7655 without restraints) Performing minimization step: 4375. Total energy = 3745.6363 kcal/mol (3737.2700 without restraints) Performing minimization step: 4376. Total energy = 3745.1389 kcal/mol (3736.7752 without restraints) Performing minimization step: 4377. Total energy = 3744.6417 kcal/mol (3736.2803 without restraints) Performing minimization step: 4378. Total energy = 3744.1450 kcal/mol (3735.7862 without restraints) Performing minimization step: 4379. Total energy = 3743.6488 kcal/mol (3735.2922 without restraints) Performing minimization step: 4380. Total energy = 3743.1527 kcal/mol (3734.7988 without restraints) Performing minimization step: 4381. Total energy = 3742.6568 kcal/mol (3734.3052 without restraints) Performing minimization step: 4382. Total energy = 3742.1614 kcal/mol (3733.8122 without restraints) Performing minimization step: 4383. Total energy = 3741.6666 kcal/mol (3733.3199 without restraints) Performing minimization step: 4384. Total energy = 3741.1721 kcal/mol (3732.8279 without restraints) Performing minimization step: 4385. Total energy = 3740.6775 kcal/mol (3732.3357 without restraints) Performing minimization step: 4386. Total energy = 3740.1834 kcal/mol (3731.8442 without restraints) Performing minimization step: 4387. Total energy = 3739.6897 kcal/mol (3731.3529 without restraints) Performing minimization step: 4388. Total energy = 3739.1965 kcal/mol (3730.8621 without restraints) Performing minimization step: 4389. Total energy = 3738.7034 kcal/mol (3730.3715 without restraints) Performing minimization step: 4390. Total energy = 3738.2108 kcal/mol (3729.8813 without restraints) Performing minimization step: 4391. Total energy = 3737.7183 kcal/mol (3729.3912 without restraints) Performing minimization step: 4392. Total energy = 3737.2265 kcal/mol (3728.9018 without restraints) Performing minimization step: 4393. Total energy = 3736.7346 kcal/mol (3728.4124 without restraints) Performing minimization step: 4394. Total energy = 3736.2432 kcal/mol (3727.9234 without restraints) Performing minimization step: 4395. Total energy = 3735.7522 kcal/mol (3727.4349 without restraints) Performing minimization step: 4396. Total energy = 3735.2615 kcal/mol (3726.9465 without restraints) Performing minimization step: 4397. Total energy = 3734.7715 kcal/mol (3726.4590 without restraints) Performing minimization step: 4398. Total energy = 3734.2817 kcal/mol (3725.9717 without restraints) Performing minimization step: 4399. Total energy = 3733.7919 kcal/mol (3725.4843 without restraints) Performing minimization step: 4400. Total energy = 3733.3024 kcal/mol (3724.9972 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 3732.8133 kcal/mol (3724.5105 without restraints) Performing minimization step: 4402. Total energy = 3732.3247 kcal/mol (3724.0244 without restraints) Performing minimization step: 4403. Total energy = 3731.8361 kcal/mol (3723.5382 without restraints) Performing minimization step: 4404. Total energy = 3731.3484 kcal/mol (3723.0529 without restraints) Performing minimization step: 4405. Total energy = 3730.8609 kcal/mol (3722.5679 without restraints) Performing minimization step: 4406. Total energy = 3730.3736 kcal/mol (3722.0829 without restraints) Performing minimization step: 4407. Total energy = 3729.8867 kcal/mol (3721.5984 without restraints) Performing minimization step: 4408. Total energy = 3729.4004 kcal/mol (3721.1146 without restraints) Performing minimization step: 4409. Total energy = 3728.9140 kcal/mol (3720.6305 without restraints) Performing minimization step: 4410. Total energy = 3728.4281 kcal/mol (3720.1470 without restraints) Performing minimization step: 4411. Total energy = 3727.9425 kcal/mol (3719.6638 without restraints) Performing minimization step: 4412. Total energy = 3727.4570 kcal/mol (3719.1807 without restraints) Performing minimization step: 4413. Total energy = 3726.9718 kcal/mol (3718.6980 without restraints) Performing minimization step: 4414. Total energy = 3726.4872 kcal/mol (3718.2158 without restraints) Performing minimization step: 4415. Total energy = 3726.0026 kcal/mol (3717.7335 without restraints) Performing minimization step: 4416. Total energy = 3725.5184 kcal/mol (3717.2518 without restraints) Performing minimization step: 4417. Total energy = 3725.0346 kcal/mol (3716.7704 without restraints) Performing minimization step: 4418. Total energy = 3724.5515 kcal/mol (3716.2897 without restraints) Performing minimization step: 4419. Total energy = 3724.0683 kcal/mol (3715.8089 without restraints) Performing minimization step: 4420. Total energy = 3723.5858 kcal/mol (3715.3288 without restraints) Performing minimization step: 4421. Total energy = 3723.1033 kcal/mol (3714.8487 without restraints) Performing minimization step: 4422. Total energy = 3722.6217 kcal/mol (3714.3695 without restraints) Performing minimization step: 4423. Total energy = 3722.1399 kcal/mol (3713.8901 without restraints) Performing minimization step: 4424. Total energy = 3721.6591 kcal/mol (3713.4118 without restraints) Performing minimization step: 4425. Total energy = 3721.1782 kcal/mol (3712.9332 without restraints) Performing minimization step: 4426. Total energy = 3720.6974 kcal/mol (3712.4548 without restraints) Performing minimization step: 4427. Total energy = 3720.2172 kcal/mol (3711.9770 without restraints) Performing minimization step: 4428. Total energy = 3719.7369 kcal/mol (3711.4991 without restraints) Performing minimization step: 4429. Total energy = 3719.2576 kcal/mol (3711.0221 without restraints) Performing minimization step: 4430. Total energy = 3718.7781 kcal/mol (3710.5451 without restraints) Performing minimization step: 4431. Total energy = 3718.2997 kcal/mol (3710.0689 without restraints) Performing minimization step: 4432. Total energy = 3717.8210 kcal/mol (3709.5927 without restraints) Performing minimization step: 4433. Total energy = 3717.3425 kcal/mol (3709.1166 without restraints) Performing minimization step: 4434. Total energy = 3716.8646 kcal/mol (3708.6410 without restraints) Performing minimization step: 4435. Total energy = 3716.3867 kcal/mol (3708.1656 without restraints) Performing minimization step: 4436. Total energy = 3715.9097 kcal/mol (3707.6909 without restraints) Performing minimization step: 4437. Total energy = 3715.4329 kcal/mol (3707.2165 without restraints) Performing minimization step: 4438. Total energy = 3714.9567 kcal/mol (3706.7426 without restraints) Performing minimization step: 4439. Total energy = 3714.4802 kcal/mol (3706.2685 without restraints) Performing minimization step: 4440. Total energy = 3714.0044 kcal/mol (3705.7951 without restraints) Performing minimization step: 4441. Total energy = 3713.5292 kcal/mol (3705.3224 without restraints) Performing minimization step: 4442. Total energy = 3713.0548 kcal/mol (3704.8501 without restraints) Performing minimization step: 4443. Total energy = 3712.5796 kcal/mol (3704.3773 without restraints) Performing minimization step: 4444. Total energy = 3712.1047 kcal/mol (3703.9048 without restraints) Performing minimization step: 4445. Total energy = 3711.6301 kcal/mol (3703.4326 without restraints) Performing minimization step: 4446. Total energy = 3711.1560 kcal/mol (3702.9609 without restraints) Performing minimization step: 4447. Total energy = 3710.6822 kcal/mol (3702.4895 without restraints) Performing minimization step: 4448. Total energy = 3710.2093 kcal/mol (3702.0189 without restraints) Performing minimization step: 4449. Total energy = 3709.7361 kcal/mol (3701.5480 without restraints) Performing minimization step: 4450. Total energy = 3709.2634 kcal/mol (3701.0777 without restraints) Performing minimization step: 4451. Total energy = 3708.7909 kcal/mol (3700.6076 without restraints) Performing minimization step: 4452. Total energy = 3708.3189 kcal/mol (3700.1379 without restraints) Performing minimization step: 4453. Total energy = 3707.8474 kcal/mol (3699.6688 without restraints) Performing minimization step: 4454. Total energy = 3707.3760 kcal/mol (3699.1997 without restraints) Performing minimization step: 4455. Total energy = 3706.9047 kcal/mol (3698.7308 without restraints) Performing minimization step: 4456. Total energy = 3706.4338 kcal/mol (3698.2622 without restraints) Performing minimization step: 4457. Total energy = 3705.9636 kcal/mol (3697.7943 without restraints) Performing minimization step: 4458. Total energy = 3705.4934 kcal/mol (3697.3266 without restraints) Performing minimization step: 4459. Total energy = 3705.0237 kcal/mol (3696.8591 without restraints) Performing minimization step: 4460. Total energy = 3704.5542 kcal/mol (3696.3921 without restraints) Performing minimization step: 4461. Total energy = 3704.0853 kcal/mol (3695.9254 without restraints) Performing minimization step: 4462. Total energy = 3703.6163 kcal/mol (3695.4587 without restraints) Performing minimization step: 4463. Total energy = 3703.1476 kcal/mol (3694.9923 without restraints) Performing minimization step: 4464. Total energy = 3702.6790 kcal/mol (3694.5260 without restraints) Performing minimization step: 4465. Total energy = 3702.2112 kcal/mol (3694.0606 without restraints) Performing minimization step: 4466. Total energy = 3701.7441 kcal/mol (3693.5959 without restraints) Performing minimization step: 4467. Total energy = 3701.2772 kcal/mol (3693.1315 without restraints) Performing minimization step: 4468. Total energy = 3700.8108 kcal/mol (3692.6672 without restraints) Performing minimization step: 4469. Total energy = 3700.3439 kcal/mol (3692.2026 without restraints) Performing minimization step: 4470. Total energy = 3699.8776 kcal/mol (3691.7387 without restraints) Performing minimization step: 4471. Total energy = 3699.4122 kcal/mol (3691.2762 without restraints) Performing minimization step: 4472. Total energy = 3698.9472 kcal/mol (3690.8129 without restraints) Performing minimization step: 4473. Total energy = 3698.4818 kcal/mol (3690.3498 without restraints) Performing minimization step: 4474. Total energy = 3698.0168 kcal/mol (3689.8872 without restraints) Performing minimization step: 4475. Total energy = 3697.5521 kcal/mol (3689.4249 without restraints) Performing minimization step: 4476. Total energy = 3697.0880 kcal/mol (3688.9630 without restraints) Performing minimization step: 4477. Total energy = 3696.6238 kcal/mol (3688.5012 without restraints) Performing minimization step: 4478. Total energy = 3696.1599 kcal/mol (3688.0396 without restraints) Performing minimization step: 4479. Total energy = 3695.6964 kcal/mol (3687.5783 without restraints) Performing minimization step: 4480. Total energy = 3695.2336 kcal/mol (3687.1179 without restraints) Performing minimization step: 4481. Total energy = 3694.7712 kcal/mol (3686.6578 without restraints) Performing minimization step: 4482. Total energy = 3694.3086 kcal/mol (3686.1976 without restraints) Performing minimization step: 4483. Total energy = 3693.8463 kcal/mol (3685.7376 without restraints) Performing minimization step: 4484. Total energy = 3693.3843 kcal/mol (3685.2778 without restraints) Performing minimization step: 4485. Total energy = 3692.9231 kcal/mol (3684.8189 without restraints) Performing minimization step: 4486. Total energy = 3692.4615 kcal/mol (3684.3597 without restraints) Performing minimization step: 4487. Total energy = 3692.0006 kcal/mol (3683.9010 without restraints) Performing minimization step: 4488. Total energy = 3691.5401 kcal/mol (3683.4428 without restraints) Performing minimization step: 4489. Total energy = 3691.0797 kcal/mol (3682.9848 without restraints) Performing minimization step: 4490. Total energy = 3690.6200 kcal/mol (3682.5273 without restraints) Performing minimization step: 4491. Total energy = 3690.1603 kcal/mol (3682.0699 without restraints) Performing minimization step: 4492. Total energy = 3689.7013 kcal/mol (3681.6132 without restraints) Performing minimization step: 4493. Total energy = 3689.2422 kcal/mol (3681.1564 without restraints) Performing minimization step: 4494. Total energy = 3688.7840 kcal/mol (3680.7005 without restraints) Performing minimization step: 4495. Total energy = 3688.3256 kcal/mol (3680.2444 without restraints) Performing minimization step: 4496. Total energy = 3687.8679 kcal/mol (3679.7890 without restraints) Performing minimization step: 4497. Total energy = 3687.4100 kcal/mol (3679.3334 without restraints) Performing minimization step: 4498. Total energy = 3686.9525 kcal/mol (3678.8781 without restraints) Performing minimization step: 4499. Total energy = 3686.4958 kcal/mol (3678.4238 without restraints) Performing minimization step: 4500. Total energy = 3686.0393 kcal/mol (3677.9695 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 3685.5829 kcal/mol (3677.5154 without restraints) Performing minimization step: 4502. Total energy = 3685.1267 kcal/mol (3677.0616 without restraints) Performing minimization step: 4503. Total energy = 3684.6714 kcal/mol (3676.6088 without restraints) Performing minimization step: 4504. Total energy = 3684.2166 kcal/mol (3676.1559 without restraints) Performing minimization step: 4505. Total energy = 3683.7615 kcal/mol (3675.7032 without restraints) Performing minimization step: 4506. Total energy = 3683.3067 kcal/mol (3675.2506 without restraints) Performing minimization step: 4507. Total energy = 3682.8523 kcal/mol (3674.7986 without restraints) Performing minimization step: 4508. Total energy = 3682.3985 kcal/mol (3674.3471 without restraints) Performing minimization step: 4509. Total energy = 3681.9447 kcal/mol (3673.8956 without restraints) Performing minimization step: 4510. Total energy = 3681.4913 kcal/mol (3673.4443 without restraints) Performing minimization step: 4511. Total energy = 3681.0379 kcal/mol (3672.9933 without restraints) Performing minimization step: 4512. Total energy = 3680.5848 kcal/mol (3672.5423 without restraints) Performing minimization step: 4513. Total energy = 3680.1322 kcal/mol (3672.0921 without restraints) Performing minimization step: 4514. Total energy = 3679.6806 kcal/mol (3671.6429 without restraints) Performing minimization step: 4515. Total energy = 3679.2290 kcal/mol (3671.1934 without restraints) Performing minimization step: 4516. Total energy = 3678.7776 kcal/mol (3670.7442 without restraints) Performing minimization step: 4517. Total energy = 3678.3260 kcal/mol (3670.2949 without restraints) Performing minimization step: 4518. Total energy = 3677.8755 kcal/mol (3669.8466 without restraints) Performing minimization step: 4519. Total energy = 3677.4247 kcal/mol (3669.3980 without restraints) Performing minimization step: 4520. Total energy = 3676.9742 kcal/mol (3668.9500 without restraints) Performing minimization step: 4521. Total energy = 3676.5241 kcal/mol (3668.5020 without restraints) Performing minimization step: 4522. Total energy = 3676.0743 kcal/mol (3668.0545 without restraints) Performing minimization step: 4523. Total energy = 3675.6250 kcal/mol (3667.6076 without restraints) Performing minimization step: 4524. Total energy = 3675.1757 kcal/mol (3667.1604 without restraints) Performing minimization step: 4525. Total energy = 3674.7266 kcal/mol (3666.7134 without restraints) Performing minimization step: 4526. Total energy = 3674.2784 kcal/mol (3666.2675 without restraints) Performing minimization step: 4527. Total energy = 3673.8304 kcal/mol (3665.8217 without restraints) Performing minimization step: 4528. Total energy = 3673.3822 kcal/mol (3665.3760 without restraints) Performing minimization step: 4529. Total energy = 3672.9352 kcal/mol (3664.9312 without restraints) Performing minimization step: 4530. Total energy = 3672.4883 kcal/mol (3664.4864 without restraints) Performing minimization step: 4531. Total energy = 3672.0409 kcal/mol (3664.0413 without restraints) Performing minimization step: 4532. Total energy = 3671.5943 kcal/mol (3663.5969 without restraints) Performing minimization step: 4533. Total energy = 3671.1479 kcal/mol (3663.1529 without restraints) Performing minimization step: 4534. Total energy = 3670.7017 kcal/mol (3662.7088 without restraints) Performing minimization step: 4535. Total energy = 3670.2557 kcal/mol (3662.2650 without restraints) Performing minimization step: 4536. Total energy = 3669.8101 kcal/mol (3661.8216 without restraints) Performing minimization step: 4537. Total energy = 3669.3651 kcal/mol (3661.3788 without restraints) Performing minimization step: 4538. Total energy = 3668.9198 kcal/mol (3660.9358 without restraints) Performing minimization step: 4539. Total energy = 3668.4757 kcal/mol (3660.4939 without restraints) Performing minimization step: 4540. Total energy = 3668.0319 kcal/mol (3660.0525 without restraints) Performing minimization step: 4541. Total energy = 3667.5879 kcal/mol (3659.6106 without restraints) Performing minimization step: 4542. Total energy = 3667.1442 kcal/mol (3659.1692 without restraints) Performing minimization step: 4543. Total energy = 3666.7006 kcal/mol (3658.7276 without restraints) Performing minimization step: 4544. Total energy = 3666.2581 kcal/mol (3658.2875 without restraints) Performing minimization step: 4545. Total energy = 3665.8161 kcal/mol (3657.8478 without restraints) Performing minimization step: 4546. Total energy = 3665.3736 kcal/mol (3657.4073 without restraints) Performing minimization step: 4547. Total energy = 3664.9312 kcal/mol (3656.9673 without restraints) Performing minimization step: 4548. Total energy = 3664.4891 kcal/mol (3656.5273 without restraints) Performing minimization step: 4549. Total energy = 3664.0473 kcal/mol (3656.0878 without restraints) Performing minimization step: 4550. Total energy = 3663.6058 kcal/mol (3655.6485 without restraints) Performing minimization step: 4551. Total energy = 3663.1649 kcal/mol (3655.2097 without restraints) Performing minimization step: 4552. Total energy = 3662.7242 kcal/mol (3654.7711 without restraints) Performing minimization step: 4553. Total energy = 3662.2835 kcal/mol (3654.3328 without restraints) Performing minimization step: 4554. Total energy = 3661.8432 kcal/mol (3653.8947 without restraints) Performing minimization step: 4555. Total energy = 3661.4035 kcal/mol (3653.4573 without restraints) Performing minimization step: 4556. Total energy = 3660.9641 kcal/mol (3653.0200 without restraints) Performing minimization step: 4557. Total energy = 3660.5247 kcal/mol (3652.5828 without restraints) Performing minimization step: 4558. Total energy = 3660.0859 kcal/mol (3652.1463 without restraints) Performing minimization step: 4559. Total energy = 3659.6472 kcal/mol (3651.7098 without restraints) Performing minimization step: 4560. Total energy = 3659.2087 kcal/mol (3651.2734 without restraints) Performing minimization step: 4561. Total energy = 3658.7708 kcal/mol (3650.8377 without restraints) Performing minimization step: 4562. Total energy = 3658.3330 kcal/mol (3650.4023 without restraints) Performing minimization step: 4563. Total energy = 3657.8956 kcal/mol (3649.9669 without restraints) Performing minimization step: 4564. Total energy = 3657.4583 kcal/mol (3649.5320 without restraints) Performing minimization step: 4565. Total energy = 3657.0215 kcal/mol (3649.0971 without restraints) Performing minimization step: 4566. Total energy = 3656.5851 kcal/mol (3648.6631 without restraints) Performing minimization step: 4567. Total energy = 3656.1496 kcal/mol (3648.2295 without restraints) Performing minimization step: 4568. Total energy = 3655.7135 kcal/mol (3647.7959 without restraints) Performing minimization step: 4569. Total energy = 3655.2778 kcal/mol (3647.3623 without restraints) Performing minimization step: 4570. Total energy = 3654.8423 kcal/mol (3646.9290 without restraints) Performing minimization step: 4571. Total energy = 3654.4071 kcal/mol (3646.4959 without restraints) Performing minimization step: 4572. Total energy = 3653.9725 kcal/mol (3646.0635 without restraints) Performing minimization step: 4573. Total energy = 3653.5382 kcal/mol (3645.6314 without restraints) Performing minimization step: 4574. Total energy = 3653.1041 kcal/mol (3645.1995 without restraints) Performing minimization step: 4575. Total energy = 3652.6709 kcal/mol (3644.7685 without restraints) Performing minimization step: 4576. Total energy = 3652.2377 kcal/mol (3644.3374 without restraints) Performing minimization step: 4577. Total energy = 3651.8047 kcal/mol (3643.9066 without restraints) Performing minimization step: 4578. Total energy = 3651.3716 kcal/mol (3643.4757 without restraints) Performing minimization step: 4579. Total energy = 3650.9394 kcal/mol (3643.0456 without restraints) Performing minimization step: 4580. Total energy = 3650.5070 kcal/mol (3642.6155 without restraints) Performing minimization step: 4581. Total energy = 3650.0755 kcal/mol (3642.1861 without restraints) Performing minimization step: 4582. Total energy = 3649.6436 kcal/mol (3641.7563 without restraints) Performing minimization step: 4583. Total energy = 3649.2121 kcal/mol (3641.3270 without restraints) Performing minimization step: 4584. Total energy = 3648.7808 kcal/mol (3640.8978 without restraints) Performing minimization step: 4585. Total energy = 3648.3500 kcal/mol (3640.4693 without restraints) Performing minimization step: 4586. Total energy = 3647.9192 kcal/mol (3640.0407 without restraints) Performing minimization step: 4587. Total energy = 3647.4888 kcal/mol (3639.6124 without restraints) Performing minimization step: 4588. Total energy = 3647.0586 kcal/mol (3639.1843 without restraints) Performing minimization step: 4589. Total energy = 3646.6288 kcal/mol (3638.7568 without restraints) Performing minimization step: 4590. Total energy = 3646.1998 kcal/mol (3638.3298 without restraints) Performing minimization step: 4591. Total energy = 3645.7705 kcal/mol (3637.9027 without restraints) Performing minimization step: 4592. Total energy = 3645.3418 kcal/mol (3637.4761 without restraints) Performing minimization step: 4593. Total energy = 3644.9131 kcal/mol (3637.0496 without restraints) Performing minimization step: 4594. Total energy = 3644.4847 kcal/mol (3636.6234 without restraints) Performing minimization step: 4595. Total energy = 3644.0575 kcal/mol (3636.1983 without restraints) Performing minimization step: 4596. Total energy = 3643.6297 kcal/mol (3635.7727 without restraints) Performing minimization step: 4597. Total energy = 3643.2025 kcal/mol (3635.3476 without restraints) Performing minimization step: 4598. Total energy = 3642.7758 kcal/mol (3634.9230 without restraints) Performing minimization step: 4599. Total energy = 3642.3493 kcal/mol (3634.4987 without restraints) Performing minimization step: 4600. Total energy = 3641.9227 kcal/mol (3634.0744 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 3641.4972 kcal/mol (3633.6510 without restraints) Performing minimization step: 4602. Total energy = 3641.0717 kcal/mol (3633.2276 without restraints) Performing minimization step: 4603. Total energy = 3640.6463 kcal/mol (3632.8043 without restraints) Performing minimization step: 4604. Total energy = 3640.2208 kcal/mol (3632.3810 without restraints) Performing minimization step: 4605. Total energy = 3639.7959 kcal/mol (3631.9582 without restraints) Performing minimization step: 4606. Total energy = 3639.3713 kcal/mol (3631.5356 without restraints) Performing minimization step: 4607. Total energy = 3638.9471 kcal/mol (3631.1136 without restraints) Performing minimization step: 4608. Total energy = 3638.5228 kcal/mol (3630.6915 without restraints) Performing minimization step: 4609. Total energy = 3638.0992 kcal/mol (3630.2700 without restraints) Performing minimization step: 4610. Total energy = 3637.6756 kcal/mol (3629.8486 without restraints) Performing minimization step: 4611. Total energy = 3637.2526 kcal/mol (3629.4277 without restraints) Performing minimization step: 4612. Total energy = 3636.8295 kcal/mol (3629.0066 without restraints) Performing minimization step: 4613. Total energy = 3636.4067 kcal/mol (3628.5860 without restraints) Performing minimization step: 4614. Total energy = 3635.9842 kcal/mol (3628.1656 without restraints) Performing minimization step: 4615. Total energy = 3635.5624 kcal/mol (3627.7462 without restraints) Performing minimization step: 4616. Total energy = 3635.1407 kcal/mol (3627.3263 without restraints) Performing minimization step: 4617. Total energy = 3634.7193 kcal/mol (3626.9072 without restraints) Performing minimization step: 4618. Total energy = 3634.2985 kcal/mol (3626.4884 without restraints) Performing minimization step: 4619. Total energy = 3633.8777 kcal/mol (3626.0698 without restraints) Performing minimization step: 4620. Total energy = 3633.4571 kcal/mol (3625.6514 without restraints) Performing minimization step: 4621. Total energy = 3633.0369 kcal/mol (3625.2332 without restraints) Performing minimization step: 4622. Total energy = 3632.6176 kcal/mol (3624.8159 without restraints) Performing minimization step: 4623. Total energy = 3632.1976 kcal/mol (3624.3980 without restraints) Performing minimization step: 4624. Total energy = 3631.7779 kcal/mol (3623.9805 without restraints) Performing minimization step: 4625. Total energy = 3631.3583 kcal/mol (3623.5630 without restraints) Performing minimization step: 4626. Total energy = 3630.9392 kcal/mol (3623.1460 without restraints) Performing minimization step: 4627. Total energy = 3630.5205 kcal/mol (3622.7294 without restraints) Performing minimization step: 4628. Total energy = 3630.1016 kcal/mol (3622.3126 without restraints) Performing minimization step: 4629. Total energy = 3629.6838 kcal/mol (3621.8970 without restraints) Performing minimization step: 4630. Total energy = 3629.2659 kcal/mol (3621.4812 without restraints) Performing minimization step: 4631. Total energy = 3628.8484 kcal/mol (3621.0657 without restraints) Performing minimization step: 4632. Total energy = 3628.4312 kcal/mol (3620.6506 without restraints) Performing minimization step: 4633. Total energy = 3628.0141 kcal/mol (3620.2356 without restraints) Performing minimization step: 4634. Total energy = 3627.5976 kcal/mol (3619.8212 without restraints) Performing minimization step: 4635. Total energy = 3627.1813 kcal/mol (3619.4070 without restraints) Performing minimization step: 4636. Total energy = 3626.7650 kcal/mol (3618.9928 without restraints) Performing minimization step: 4637. Total energy = 3626.3491 kcal/mol (3618.5790 without restraints) Performing minimization step: 4638. Total energy = 3625.9334 kcal/mol (3618.1654 without restraints) Performing minimization step: 4639. Total energy = 3625.5181 kcal/mol (3617.7523 without restraints) Performing minimization step: 4640. Total energy = 3625.1033 kcal/mol (3617.3395 without restraints) Performing minimization step: 4641. Total energy = 3624.6885 kcal/mol (3616.9267 without restraints) Performing minimization step: 4642. Total energy = 3624.2742 kcal/mol (3616.5145 without restraints) Performing minimization step: 4643. Total energy = 3623.8603 kcal/mol (3616.1028 without restraints) Performing minimization step: 4644. Total energy = 3623.4464 kcal/mol (3615.6909 without restraints) Performing minimization step: 4645. Total energy = 3623.0333 kcal/mol (3615.2801 without restraints) Performing minimization step: 4646. Total energy = 3622.6199 kcal/mol (3614.8685 without restraints) Performing minimization step: 4647. Total energy = 3622.2073 kcal/mol (3614.4581 without restraints) Performing minimization step: 4648. Total energy = 3621.7953 kcal/mol (3614.0482 without restraints) Performing minimization step: 4649. Total energy = 3621.3827 kcal/mol (3613.6376 without restraints) Performing minimization step: 4650. Total energy = 3620.9704 kcal/mol (3613.2274 without restraints) Performing minimization step: 4651. Total energy = 3620.5587 kcal/mol (3612.8177 without restraints) Performing minimization step: 4652. Total energy = 3620.1470 kcal/mol (3612.4081 without restraints) Performing minimization step: 4653. Total energy = 3619.7355 kcal/mol (3611.9987 without restraints) Performing minimization step: 4654. Total energy = 3619.3243 kcal/mol (3611.5895 without restraints) Performing minimization step: 4655. Total energy = 3618.9136 kcal/mol (3611.1809 without restraints) Performing minimization step: 4656. Total energy = 3618.5032 kcal/mol (3610.7726 without restraints) Performing minimization step: 4657. Total energy = 3618.0931 kcal/mol (3610.3646 without restraints) Performing minimization step: 4658. Total energy = 3617.6834 kcal/mol (3609.9569 without restraints) Performing minimization step: 4659. Total energy = 3617.2736 kcal/mol (3609.5492 without restraints) Performing minimization step: 4660. Total energy = 3616.8648 kcal/mol (3609.1424 without restraints) Performing minimization step: 4661. Total energy = 3616.4556 kcal/mol (3608.7354 without restraints) Performing minimization step: 4662. Total energy = 3616.0470 kcal/mol (3608.3289 without restraints) Performing minimization step: 4663. Total energy = 3615.6385 kcal/mol (3607.9223 without restraints) Performing minimization step: 4664. Total energy = 3615.2302 kcal/mol (3607.5161 without restraints) Performing minimization step: 4665. Total energy = 3614.8225 kcal/mol (3607.1106 without restraints) Performing minimization step: 4666. Total energy = 3614.4152 kcal/mol (3606.7053 without restraints) Performing minimization step: 4667. Total energy = 3614.0083 kcal/mol (3606.3004 without restraints) Performing minimization step: 4668. Total energy = 3613.6014 kcal/mol (3605.8955 without restraints) Performing minimization step: 4669. Total energy = 3613.1945 kcal/mol (3605.4906 without restraints) Performing minimization step: 4670. Total energy = 3612.7883 kcal/mol (3605.0865 without restraints) Performing minimization step: 4671. Total energy = 3612.3819 kcal/mol (3604.6821 without restraints) Performing minimization step: 4672. Total energy = 3611.9759 kcal/mol (3604.2784 without restraints) Performing minimization step: 4673. Total energy = 3611.5705 kcal/mol (3603.8750 without restraints) Performing minimization step: 4674. Total energy = 3611.1653 kcal/mol (3603.4717 without restraints) Performing minimization step: 4675. Total energy = 3610.7601 kcal/mol (3603.0684 without restraints) Performing minimization step: 4676. Total energy = 3610.3551 kcal/mol (3602.6655 without restraints) Performing minimization step: 4677. Total energy = 3609.9503 kcal/mol (3602.2628 without restraints) Performing minimization step: 4678. Total energy = 3609.5460 kcal/mol (3601.8605 without restraints) Performing minimization step: 4679. Total energy = 3609.1418 kcal/mol (3601.4582 without restraints) Performing minimization step: 4680. Total energy = 3608.7376 kcal/mol (3601.0561 without restraints) Performing minimization step: 4681. Total energy = 3608.3342 kcal/mol (3600.6549 without restraints) Performing minimization step: 4682. Total energy = 3607.9311 kcal/mol (3600.2538 without restraints) Performing minimization step: 4683. Total energy = 3607.5281 kcal/mol (3599.8528 without restraints) Performing minimization step: 4684. Total energy = 3607.1253 kcal/mol (3599.4520 without restraints) Performing minimization step: 4685. Total energy = 3606.7234 kcal/mol (3599.0520 without restraints) Performing minimization step: 4686. Total energy = 3606.3210 kcal/mol (3598.6518 without restraints) Performing minimization step: 4687. Total energy = 3605.9190 kcal/mol (3598.2518 without restraints) Performing minimization step: 4688. Total energy = 3605.5172 kcal/mol (3597.8521 without restraints) Performing minimization step: 4689. Total energy = 3605.1159 kcal/mol (3597.4527 without restraints) Performing minimization step: 4690. Total energy = 3604.7155 kcal/mol (3597.0543 without restraints) Performing minimization step: 4691. Total energy = 3604.3146 kcal/mol (3596.6554 without restraints) Performing minimization step: 4692. Total energy = 3603.9141 kcal/mol (3596.2568 without restraints) Performing minimization step: 4693. Total energy = 3603.5137 kcal/mol (3595.8585 without restraints) Performing minimization step: 4694. Total energy = 3603.1136 kcal/mol (3595.4605 without restraints) Performing minimization step: 4695. Total energy = 3602.7139 kcal/mol (3595.0628 without restraints) Performing minimization step: 4696. Total energy = 3602.3148 kcal/mol (3594.6657 without restraints) Performing minimization step: 4697. Total energy = 3601.9159 kcal/mol (3594.2688 without restraints) Performing minimization step: 4698. Total energy = 3601.5171 kcal/mol (3593.8720 without restraints) Performing minimization step: 4699. Total energy = 3601.1186 kcal/mol (3593.4755 without restraints) Performing minimization step: 4700. Total energy = 3600.7202 kcal/mol (3593.0792 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 3600.3223 kcal/mol (3592.6832 without restraints) Performing minimization step: 4702. Total energy = 3599.9245 kcal/mol (3592.2875 without restraints) Performing minimization step: 4703. Total energy = 3599.5274 kcal/mol (3591.8924 without restraints) Performing minimization step: 4704. Total energy = 3599.1302 kcal/mol (3591.4971 without restraints) Performing minimization step: 4705. Total energy = 3598.7331 kcal/mol (3591.1020 without restraints) Performing minimization step: 4706. Total energy = 3598.3362 kcal/mol (3590.7070 without restraints) Performing minimization step: 4707. Total energy = 3597.9395 kcal/mol (3590.3125 without restraints) Performing minimization step: 4708. Total energy = 3597.5437 kcal/mol (3589.9186 without restraints) Performing minimization step: 4709. Total energy = 3597.1481 kcal/mol (3589.5250 without restraints) Performing minimization step: 4710. Total energy = 3596.7523 kcal/mol (3589.1312 without restraints) Performing minimization step: 4711. Total energy = 3596.3568 kcal/mol (3588.7376 without restraints) Performing minimization step: 4712. Total energy = 3595.9616 kcal/mol (3588.3445 without restraints) Performing minimization step: 4713. Total energy = 3595.5669 kcal/mol (3587.9518 without restraints) Performing minimization step: 4714. Total energy = 3595.1724 kcal/mol (3587.5594 without restraints) Performing minimization step: 4715. Total energy = 3594.7783 kcal/mol (3587.1674 without restraints) Performing minimization step: 4716. Total energy = 3594.3846 kcal/mol (3586.7755 without restraints) Performing minimization step: 4717. Total energy = 3593.9909 kcal/mol (3586.3837 without restraints) Performing minimization step: 4718. Total energy = 3593.5974 kcal/mol (3585.9922 without restraints) Performing minimization step: 4719. Total energy = 3593.2041 kcal/mol (3585.6009 without restraints) Performing minimization step: 4720. Total energy = 3592.8111 kcal/mol (3585.2099 without restraints) Performing minimization step: 4721. Total energy = 3592.4184 kcal/mol (3584.8192 without restraints) Performing minimization step: 4722. Total energy = 3592.0258 kcal/mol (3584.4283 without restraints) Performing minimization step: 4723. Total energy = 3591.6335 kcal/mol (3584.0381 without restraints) Performing minimization step: 4724. Total energy = 3591.2414 kcal/mol (3583.6481 without restraints) Performing minimization step: 4725. Total energy = 3590.8497 kcal/mol (3583.2584 without restraints) Performing minimization step: 4726. Total energy = 3590.4583 kcal/mol (3582.8689 without restraints) Performing minimization step: 4727. Total energy = 3590.0675 kcal/mol (3582.4801 without restraints) Performing minimization step: 4728. Total energy = 3589.6775 kcal/mol (3582.0921 without restraints) Performing minimization step: 4729. Total energy = 3589.2870 kcal/mol (3581.7035 without restraints) Performing minimization step: 4730. Total energy = 3588.8966 kcal/mol (3581.3152 without restraints) Performing minimization step: 4731. Total energy = 3588.5068 kcal/mol (3580.9273 without restraints) Performing minimization step: 4732. Total energy = 3588.1174 kcal/mol (3580.5399 without restraints) Performing minimization step: 4733. Total energy = 3587.7280 kcal/mol (3580.1524 without restraints) Performing minimization step: 4734. Total energy = 3587.3390 kcal/mol (3579.7654 without restraints) Performing minimization step: 4735. Total energy = 3586.9503 kcal/mol (3579.3787 without restraints) Performing minimization step: 4736. Total energy = 3586.5622 kcal/mol (3578.9924 without restraints) Performing minimization step: 4737. Total energy = 3586.1739 kcal/mol (3578.6061 without restraints) Performing minimization step: 4738. Total energy = 3585.7860 kcal/mol (3578.2203 without restraints) Performing minimization step: 4739. Total energy = 3585.3986 kcal/mol (3577.8347 without restraints) Performing minimization step: 4740. Total energy = 3585.0110 kcal/mol (3577.4490 without restraints) Performing minimization step: 4741. Total energy = 3584.6235 kcal/mol (3577.0635 without restraints) Performing minimization step: 4742. Total energy = 3584.2365 kcal/mol (3576.6786 without restraints) Performing minimization step: 4743. Total energy = 3583.8497 kcal/mol (3576.2936 without restraints) Performing minimization step: 4744. Total energy = 3583.4630 kcal/mol (3575.9089 without restraints) Performing minimization step: 4745. Total energy = 3583.0768 kcal/mol (3575.5246 without restraints) Performing minimization step: 4746. Total energy = 3582.6907 kcal/mol (3575.1405 without restraints) Performing minimization step: 4747. Total energy = 3582.3053 kcal/mol (3574.7568 without restraints) Performing minimization step: 4748. Total energy = 3581.9200 kcal/mol (3574.3737 without restraints) Performing minimization step: 4749. Total energy = 3581.5349 kcal/mol (3573.9905 without restraints) Performing minimization step: 4750. Total energy = 3581.1503 kcal/mol (3573.6080 without restraints) Performing minimization step: 4751. Total energy = 3580.7659 kcal/mol (3573.2254 without restraints) Performing minimization step: 4752. Total energy = 3580.3814 kcal/mol (3572.8428 without restraints) Performing minimization step: 4753. Total energy = 3579.9971 kcal/mol (3572.4604 without restraints) Performing minimization step: 4754. Total energy = 3579.6135 kcal/mol (3572.0788 without restraints) Performing minimization step: 4755. Total energy = 3579.2301 kcal/mol (3571.6973 without restraints) Performing minimization step: 4756. Total energy = 3578.8468 kcal/mol (3571.3159 without restraints) Performing minimization step: 4757. Total energy = 3578.4642 kcal/mol (3570.9352 without restraints) Performing minimization step: 4758. Total energy = 3578.0813 kcal/mol (3570.5543 without restraints) Performing minimization step: 4759. Total energy = 3577.6988 kcal/mol (3570.1737 without restraints) Performing minimization step: 4760. Total energy = 3577.3166 kcal/mol (3569.7935 without restraints) Performing minimization step: 4761. Total energy = 3576.9345 kcal/mol (3569.4134 without restraints) Performing minimization step: 4762. Total energy = 3576.5529 kcal/mol (3569.0336 without restraints) Performing minimization step: 4763. Total energy = 3576.1717 kcal/mol (3568.6543 without restraints) Performing minimization step: 4764. Total energy = 3575.7903 kcal/mol (3568.2749 without restraints) Performing minimization step: 4765. Total energy = 3575.4096 kcal/mol (3567.8962 without restraints) Performing minimization step: 4766. Total energy = 3575.0296 kcal/mol (3567.5181 without restraints) Performing minimization step: 4767. Total energy = 3574.6489 kcal/mol (3567.1390 without restraints) Performing minimization step: 4768. Total energy = 3574.2685 kcal/mol (3566.7607 without restraints) Performing minimization step: 4769. Total energy = 3573.8884 kcal/mol (3566.3825 without restraints) Performing minimization step: 4770. Total energy = 3573.5091 kcal/mol (3566.0051 without restraints) Performing minimization step: 4771. Total energy = 3573.1292 kcal/mol (3565.6270 without restraints) Performing minimization step: 4772. Total energy = 3572.7498 kcal/mol (3565.2496 without restraints) Performing minimization step: 4773. Total energy = 3572.3705 kcal/mol (3564.8722 without restraints) Performing minimization step: 4774. Total energy = 3571.9919 kcal/mol (3564.4956 without restraints) Performing minimization step: 4775. Total energy = 3571.6134 kcal/mol (3564.1190 without restraints) Performing minimization step: 4776. Total energy = 3571.2355 kcal/mol (3563.7430 without restraints) Performing minimization step: 4777. Total energy = 3570.8575 kcal/mol (3563.3669 without restraints) Performing minimization step: 4778. Total energy = 3570.4804 kcal/mol (3562.9917 without restraints) Performing minimization step: 4779. Total energy = 3570.1031 kcal/mol (3562.6163 without restraints) Performing minimization step: 4780. Total energy = 3569.7259 kcal/mol (3562.2410 without restraints) Performing minimization step: 4781. Total energy = 3569.3489 kcal/mol (3561.8658 without restraints) Performing minimization step: 4782. Total energy = 3568.9721 kcal/mol (3561.4910 without restraints) Performing minimization step: 4783. Total energy = 3568.5958 kcal/mol (3561.1166 without restraints) Performing minimization step: 4784. Total energy = 3568.2205 kcal/mol (3560.7433 without restraints) Performing minimization step: 4785. Total energy = 3567.8447 kcal/mol (3560.3692 without restraints) Performing minimization step: 4786. Total energy = 3567.4692 kcal/mol (3559.9956 without restraints) Performing minimization step: 4787. Total energy = 3567.0941 kcal/mol (3559.6225 without restraints) Performing minimization step: 4788. Total energy = 3566.7193 kcal/mol (3559.2495 without restraints) Performing minimization step: 4789. Total energy = 3566.3445 kcal/mol (3558.8766 without restraints) Performing minimization step: 4790. Total energy = 3565.9698 kcal/mol (3558.5038 without restraints) Performing minimization step: 4791. Total energy = 3565.5956 kcal/mol (3558.1317 without restraints) Performing minimization step: 4792. Total energy = 3565.2219 kcal/mol (3557.7596 without restraints) Performing minimization step: 4793. Total energy = 3564.8480 kcal/mol (3557.3877 without restraints) Performing minimization step: 4794. Total energy = 3564.4745 kcal/mol (3557.0161 without restraints) Performing minimization step: 4795. Total energy = 3564.1021 kcal/mol (3556.6457 without restraints) Performing minimization step: 4796. Total energy = 3563.7298 kcal/mol (3556.2753 without restraints) Performing minimization step: 4797. Total energy = 3563.3573 kcal/mol (3555.9045 without restraints) Performing minimization step: 4798. Total energy = 3562.9849 kcal/mol (3555.5339 without restraints) Performing minimization step: 4799. Total energy = 3562.6125 kcal/mol (3555.1634 without restraints) Performing minimization step: 4800. Total energy = 3562.2403 kcal/mol (3554.7931 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 3561.8684 kcal/mol (3554.4231 without restraints) Performing minimization step: 4802. Total energy = 3561.4968 kcal/mol (3554.0534 without restraints) Performing minimization step: 4803. Total energy = 3561.1263 kcal/mol (3553.6849 without restraints) Performing minimization step: 4804. Total energy = 3560.7553 kcal/mol (3553.3156 without restraints) Performing minimization step: 4805. Total energy = 3560.3846 kcal/mol (3552.9468 without restraints) Performing minimization step: 4806. Total energy = 3560.0145 kcal/mol (3552.5786 without restraints) Performing minimization step: 4807. Total energy = 3559.6443 kcal/mol (3552.2103 without restraints) Performing minimization step: 4808. Total energy = 3559.2743 kcal/mol (3551.8422 without restraints) Performing minimization step: 4809. Total energy = 3558.9047 kcal/mol (3551.4744 without restraints) Performing minimization step: 4810. Total energy = 3558.5355 kcal/mol (3551.1069 without restraints) Performing minimization step: 4811. Total energy = 3558.1662 kcal/mol (3550.7397 without restraints) Performing minimization step: 4812. Total energy = 3557.7979 kcal/mol (3550.3731 without restraints) Performing minimization step: 4813. Total energy = 3557.4296 kcal/mol (3550.0067 without restraints) Performing minimization step: 4814. Total energy = 3557.0613 kcal/mol (3549.6403 without restraints) Performing minimization step: 4815. Total energy = 3556.6930 kcal/mol (3549.2738 without restraints) Performing minimization step: 4816. Total energy = 3556.3254 kcal/mol (3548.9082 without restraints) Performing minimization step: 4817. Total energy = 3555.9580 kcal/mol (3548.5426 without restraints) Performing minimization step: 4818. Total energy = 3555.5912 kcal/mol (3548.1777 without restraints) Performing minimization step: 4819. Total energy = 3555.2246 kcal/mol (3547.8128 without restraints) Performing minimization step: 4820. Total energy = 3554.8571 kcal/mol (3547.4473 without restraints) Performing minimization step: 4821. Total energy = 3554.4904 kcal/mol (3547.0823 without restraints) Performing minimization step: 4822. Total energy = 3554.1237 kcal/mol (3546.7175 without restraints) Performing minimization step: 4823. Total energy = 3553.7574 kcal/mol (3546.3530 without restraints) Performing minimization step: 4824. Total energy = 3553.3916 kcal/mol (3545.9892 without restraints) Performing minimization step: 4825. Total energy = 3553.0259 kcal/mol (3545.6252 without restraints) Performing minimization step: 4826. Total energy = 3552.6607 kcal/mol (3545.2620 without restraints) Performing minimization step: 4827. Total energy = 3552.2957 kcal/mol (3544.8986 without restraints) Performing minimization step: 4828. Total energy = 3551.9306 kcal/mol (3544.5353 without restraints) Performing minimization step: 4829. Total energy = 3551.5661 kcal/mol (3544.1727 without restraints) Performing minimization step: 4830. Total energy = 3551.2015 kcal/mol (3543.8100 without restraints) Performing minimization step: 4831. Total energy = 3550.8375 kcal/mol (3543.4480 without restraints) Performing minimization step: 4832. Total energy = 3550.4736 kcal/mol (3543.0858 without restraints) Performing minimization step: 4833. Total energy = 3550.1097 kcal/mol (3542.7237 without restraints) Performing minimization step: 4834. Total energy = 3549.7463 kcal/mol (3542.3622 without restraints) Performing minimization step: 4835. Total energy = 3549.3830 kcal/mol (3542.0007 without restraints) Performing minimization step: 4836. Total energy = 3549.0199 kcal/mol (3541.6394 without restraints) Performing minimization step: 4837. Total energy = 3548.6569 kcal/mol (3541.2783 without restraints) Performing minimization step: 4838. Total energy = 3548.2943 kcal/mol (3540.9175 without restraints) Performing minimization step: 4839. Total energy = 3547.9321 kcal/mol (3540.5571 without restraints) Performing minimization step: 4840. Total energy = 3547.5700 kcal/mol (3540.1969 without restraints) Performing minimization step: 4841. Total energy = 3547.2084 kcal/mol (3539.8370 without restraints) Performing minimization step: 4842. Total energy = 3546.8467 kcal/mol (3539.4772 without restraints) Performing minimization step: 4843. Total energy = 3546.4857 kcal/mol (3539.1181 without restraints) Performing minimization step: 4844. Total energy = 3546.1247 kcal/mol (3538.7588 without restraints) Performing minimization step: 4845. Total energy = 3545.7638 kcal/mol (3538.3997 without restraints) Performing minimization step: 4846. Total energy = 3545.4036 kcal/mol (3538.0416 without restraints) Performing minimization step: 4847. Total energy = 3545.0436 kcal/mol (3537.6832 without restraints) Performing minimization step: 4848. Total energy = 3544.6837 kcal/mol (3537.3250 without restraints) Performing minimization step: 4849. Total energy = 3544.3241 kcal/mol (3536.9673 without restraints) Performing minimization step: 4850. Total energy = 3543.9651 kcal/mol (3536.6101 without restraints) Performing minimization step: 4851. Total energy = 3543.6057 kcal/mol (3536.2525 without restraints) Performing minimization step: 4852. Total energy = 3543.2463 kcal/mol (3535.8950 without restraints) Performing minimization step: 4853. Total energy = 3542.8875 kcal/mol (3535.5379 without restraints) Performing minimization step: 4854. Total energy = 3542.5292 kcal/mol (3535.1815 without restraints) Performing minimization step: 4855. Total energy = 3542.1712 kcal/mol (3534.8252 without restraints) Performing minimization step: 4856. Total energy = 3541.8133 kcal/mol (3534.4691 without restraints) Performing minimization step: 4857. Total energy = 3541.4555 kcal/mol (3534.1130 without restraints) Performing minimization step: 4858. Total energy = 3541.0980 kcal/mol (3533.7575 without restraints) Performing minimization step: 4859. Total energy = 3540.7404 kcal/mol (3533.4017 without restraints) Performing minimization step: 4860. Total energy = 3540.3834 kcal/mol (3533.0464 without restraints) Performing minimization step: 4861. Total energy = 3540.0267 kcal/mol (3532.6915 without restraints) Performing minimization step: 4862. Total energy = 3539.6701 kcal/mol (3532.3367 without restraints) Performing minimization step: 4863. Total energy = 3539.3138 kcal/mol (3531.9822 without restraints) Performing minimization step: 4864. Total energy = 3538.9584 kcal/mol (3531.6286 without restraints) Performing minimization step: 4865. Total energy = 3538.6026 kcal/mol (3531.2746 without restraints) Performing minimization step: 4866. Total energy = 3538.2476 kcal/mol (3530.9215 without restraints) Performing minimization step: 4867. Total energy = 3537.8921 kcal/mol (3530.5677 without restraints) Performing minimization step: 4868. Total energy = 3537.5368 kcal/mol (3530.2142 without restraints) Performing minimization step: 4869. Total energy = 3537.1817 kcal/mol (3529.8609 without restraints) Performing minimization step: 4870. Total energy = 3536.8273 kcal/mol (3529.5083 without restraints) Performing minimization step: 4871. Total energy = 3536.4727 kcal/mol (3529.1555 without restraints) Performing minimization step: 4872. Total energy = 3536.1185 kcal/mol (3528.8031 without restraints) Performing minimization step: 4873. Total energy = 3535.7646 kcal/mol (3528.4509 without restraints) Performing minimization step: 4874. Total energy = 3535.4111 kcal/mol (3528.0994 without restraints) Performing minimization step: 4875. Total energy = 3535.0578 kcal/mol (3527.7478 without restraints) Performing minimization step: 4876. Total energy = 3534.7047 kcal/mol (3527.3964 without restraints) Performing minimization step: 4877. Total energy = 3534.3519 kcal/mol (3527.0455 without restraints) Performing minimization step: 4878. Total energy = 3533.9996 kcal/mol (3526.6950 without restraints) Performing minimization step: 4879. Total energy = 3533.6473 kcal/mol (3526.3443 without restraints) Performing minimization step: 4880. Total energy = 3533.2951 kcal/mol (3525.9939 without restraints) Performing minimization step: 4881. Total energy = 3532.9433 kcal/mol (3525.6438 without restraints) Performing minimization step: 4882. Total energy = 3532.5915 kcal/mol (3525.2938 without restraints) Performing minimization step: 4883. Total energy = 3532.2400 kcal/mol (3524.9443 without restraints) Performing minimization step: 4884. Total energy = 3531.8889 kcal/mol (3524.5948 without restraints) Performing minimization step: 4885. Total energy = 3531.5380 kcal/mol (3524.2457 without restraints) Performing minimization step: 4886. Total energy = 3531.1876 kcal/mol (3523.8970 without restraints) Performing minimization step: 4887. Total energy = 3530.8368 kcal/mol (3523.5480 without restraints) Performing minimization step: 4888. Total energy = 3530.4868 kcal/mol (3523.1998 without restraints) Performing minimization step: 4889. Total energy = 3530.1363 kcal/mol (3522.8510 without restraints) Performing minimization step: 4890. Total energy = 3529.7864 kcal/mol (3522.5029 without restraints) Performing minimization step: 4891. Total energy = 3529.4368 kcal/mol (3522.1551 without restraints) Performing minimization step: 4892. Total energy = 3529.0872 kcal/mol (3521.8072 without restraints) Performing minimization step: 4893. Total energy = 3528.7379 kcal/mol (3521.4597 without restraints) Performing minimization step: 4894. Total energy = 3528.3894 kcal/mol (3521.1129 without restraints) Performing minimization step: 4895. Total energy = 3528.0408 kcal/mol (3520.7661 without restraints) Performing minimization step: 4896. Total energy = 3527.6922 kcal/mol (3520.4193 without restraints) Performing minimization step: 4897. Total energy = 3527.3444 kcal/mol (3520.0734 without restraints) Performing minimization step: 4898. Total energy = 3526.9973 kcal/mol (3519.7280 without restraints) Performing minimization step: 4899. Total energy = 3526.6500 kcal/mol (3519.3825 without restraints) Performing minimization step: 4900. Total energy = 3526.3026 kcal/mol (3519.0367 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 3525.9552 kcal/mol (3518.6910 without restraints) Performing minimization step: 4902. Total energy = 3525.6081 kcal/mol (3518.3457 without restraints) Performing minimization step: 4903. Total energy = 3525.2611 kcal/mol (3518.0004 without restraints) Performing minimization step: 4904. Total energy = 3524.9149 kcal/mol (3517.6561 without restraints) Performing minimization step: 4905. Total energy = 3524.5684 kcal/mol (3517.3113 without restraints) Performing minimization step: 4906. Total energy = 3524.2222 kcal/mol (3516.9668 without restraints) Performing minimization step: 4907. Total energy = 3523.8766 kcal/mol (3516.6229 without restraints) Performing minimization step: 4908. Total energy = 3523.5312 kcal/mol (3516.2793 without restraints) Performing minimization step: 4909. Total energy = 3523.1857 kcal/mol (3515.9357 without restraints) Performing minimization step: 4910. Total energy = 3522.8406 kcal/mol (3515.5923 without restraints) Performing minimization step: 4911. Total energy = 3522.4958 kcal/mol (3515.2491 without restraints) Performing minimization step: 4912. Total energy = 3522.1509 kcal/mol (3514.9059 without restraints) Performing minimization step: 4913. Total energy = 3521.8063 kcal/mol (3514.5631 without restraints) Performing minimization step: 4914. Total energy = 3521.4616 kcal/mol (3514.2200 without restraints) Performing minimization step: 4915. Total energy = 3521.1174 kcal/mol (3513.8776 without restraints) Performing minimization step: 4916. Total energy = 3520.7735 kcal/mol (3513.5355 without restraints) Performing minimization step: 4917. Total energy = 3520.4299 kcal/mol (3513.1936 without restraints) Performing minimization step: 4918. Total energy = 3520.0864 kcal/mol (3512.8518 without restraints) Performing minimization step: 4919. Total energy = 3519.7434 kcal/mol (3512.5106 without restraints) Performing minimization step: 4920. Total energy = 3519.4006 kcal/mol (3512.1695 without restraints) Performing minimization step: 4921. Total energy = 3519.0578 kcal/mol (3511.8285 without restraints) Performing minimization step: 4922. Total energy = 3518.7155 kcal/mol (3511.4878 without restraints) Performing minimization step: 4923. Total energy = 3518.3734 kcal/mol (3511.1475 without restraints) Performing minimization step: 4924. Total energy = 3518.0314 kcal/mol (3510.8073 without restraints) Performing minimization step: 4925. Total energy = 3517.6897 kcal/mol (3510.4673 without restraints) Performing minimization step: 4926. Total energy = 3517.3482 kcal/mol (3510.1275 without restraints) Performing minimization step: 4927. Total energy = 3517.0068 kcal/mol (3509.7878 without restraints) Performing minimization step: 4928. Total energy = 3516.6658 kcal/mol (3509.4486 without restraints) Performing minimization step: 4929. Total energy = 3516.3253 kcal/mol (3509.1097 without restraints) Performing minimization step: 4930. Total energy = 3515.9845 kcal/mol (3508.7707 without restraints) Performing minimization step: 4931. Total energy = 3515.6440 kcal/mol (3508.4319 without restraints) Performing minimization step: 4932. Total energy = 3515.3038 kcal/mol (3508.0934 without restraints) Performing minimization step: 4933. Total energy = 3514.9637 kcal/mol (3507.7551 without restraints) Performing minimization step: 4934. Total energy = 3514.6241 kcal/mol (3507.4171 without restraints) Performing minimization step: 4935. Total energy = 3514.2846 kcal/mol (3507.0794 without restraints) Performing minimization step: 4936. Total energy = 3513.9458 kcal/mol (3506.7422 without restraints) Performing minimization step: 4937. Total energy = 3513.6067 kcal/mol (3506.4049 without restraints) Performing minimization step: 4938. Total energy = 3513.2679 kcal/mol (3506.0679 without restraints) Performing minimization step: 4939. Total energy = 3512.9298 kcal/mol (3505.7314 without restraints) Performing minimization step: 4940. Total energy = 3512.5914 kcal/mol (3505.3947 without restraints) Performing minimization step: 4941. Total energy = 3512.2535 kcal/mol (3505.0587 without restraints) Performing minimization step: 4942. Total energy = 3511.9159 kcal/mol (3504.7227 without restraints) Performing minimization step: 4943. Total energy = 3511.5784 kcal/mol (3504.3868 without restraints) Performing minimization step: 4944. Total energy = 3511.2410 kcal/mol (3504.0511 without restraints) Performing minimization step: 4945. Total energy = 3510.9042 kcal/mol (3503.7160 without restraints) Performing minimization step: 4946. Total energy = 3510.5678 kcal/mol (3503.3813 without restraints) Performing minimization step: 4947. Total energy = 3510.2310 kcal/mol (3503.0463 without restraints) Performing minimization step: 4948. Total energy = 3509.8945 kcal/mol (3502.7114 without restraints) Performing minimization step: 4949. Total energy = 3509.5587 kcal/mol (3502.3774 without restraints) Performing minimization step: 4950. Total energy = 3509.2227 kcal/mol (3502.0430 without restraints) Performing minimization step: 4951. Total energy = 3508.8871 kcal/mol (3501.7092 without restraints) Performing minimization step: 4952. Total energy = 3508.5515 kcal/mol (3501.3752 without restraints) Performing minimization step: 4953. Total energy = 3508.2160 kcal/mol (3501.0414 without restraints) Performing minimization step: 4954. Total energy = 3507.8815 kcal/mol (3500.7086 without restraints) Performing minimization step: 4955. Total energy = 3507.5466 kcal/mol (3500.3755 without restraints) Performing minimization step: 4956. Total energy = 3507.2125 kcal/mol (3500.0430 without restraints) Performing minimization step: 4957. Total energy = 3506.8782 kcal/mol (3499.7104 without restraints) Performing minimization step: 4958. Total energy = 3506.5439 kcal/mol (3499.3778 without restraints) Performing minimization step: 4959. Total energy = 3506.2099 kcal/mol (3499.0456 without restraints) Performing minimization step: 4960. Total energy = 3505.8762 kcal/mol (3498.7135 without restraints) Performing minimization step: 4961. Total energy = 3505.5431 kcal/mol (3498.3820 without restraints) Performing minimization step: 4962. Total energy = 3505.2103 kcal/mol (3498.0510 without restraints) Performing minimization step: 4963. Total energy = 3504.8783 kcal/mol (3497.7207 without restraints) Performing minimization step: 4964. Total energy = 3504.5460 kcal/mol (3497.3900 without restraints) Performing minimization step: 4965. Total energy = 3504.2134 kcal/mol (3497.0591 without restraints) Performing minimization step: 4966. Total energy = 3503.8812 kcal/mol (3496.7285 without restraints) Performing minimization step: 4967. Total energy = 3503.5492 kcal/mol (3496.3985 without restraints) Performing minimization step: 4968. Total energy = 3503.2175 kcal/mol (3496.0682 without restraints) Performing minimization step: 4969. Total energy = 3502.8856 kcal/mol (3495.7380 without restraints) Performing minimization step: 4970. Total energy = 3502.5542 kcal/mol (3495.4083 without restraints) Performing minimization step: 4971. Total energy = 3502.2229 kcal/mol (3495.0786 without restraints) Performing minimization step: 4972. Total energy = 3501.8924 kcal/mol (3494.7499 without restraints) Performing minimization step: 4973. Total energy = 3501.5616 kcal/mol (3494.4207 without restraints) Performing minimization step: 4974. Total energy = 3501.2307 kcal/mol (3494.0914 without restraints) Performing minimization step: 4975. Total energy = 3500.9002 kcal/mol (3493.7626 without restraints) Performing minimization step: 4976. Total energy = 3500.5701 kcal/mol (3493.4343 without restraints) Performing minimization step: 4977. Total energy = 3500.2402 kcal/mol (3493.1060 without restraints) Performing minimization step: 4978. Total energy = 3499.9102 kcal/mol (3492.7776 without restraints) Performing minimization step: 4979. Total energy = 3499.5808 kcal/mol (3492.4499 without restraints) Performing minimization step: 4980. Total energy = 3499.2515 kcal/mol (3492.1222 without restraints) Performing minimization step: 4981. Total energy = 3498.9229 kcal/mol (3491.7956 without restraints) Performing minimization step: 4982. Total energy = 3498.5947 kcal/mol (3491.4689 without restraints) Performing minimization step: 4983. Total energy = 3498.2666 kcal/mol (3491.1423 without restraints) Performing minimization step: 4984. Total energy = 3497.9381 kcal/mol (3490.8155 without restraints) Performing minimization step: 4985. Total energy = 3497.6102 kcal/mol (3490.4893 without restraints) Performing minimization step: 4986. Total energy = 3497.2823 kcal/mol (3490.1632 without restraints) Performing minimization step: 4987. Total energy = 3496.9548 kcal/mol (3489.8373 without restraints) Performing minimization step: 4988. Total energy = 3496.6276 kcal/mol (3489.5118 without restraints) Performing minimization step: 4989. Total energy = 3496.3009 kcal/mol (3489.1868 without restraints) Performing minimization step: 4990. Total energy = 3495.9739 kcal/mol (3488.8612 without restraints) Performing minimization step: 4991. Total energy = 3495.6472 kcal/mol (3488.5363 without restraints) Performing minimization step: 4992. Total energy = 3495.3205 kcal/mol (3488.2112 without restraints) Performing minimization step: 4993. Total energy = 3494.9945 kcal/mol (3487.8869 without restraints) Performing minimization step: 4994. Total energy = 3494.6694 kcal/mol (3487.5634 without restraints) Performing minimization step: 4995. Total energy = 3494.3436 kcal/mol (3487.2394 without restraints) Performing minimization step: 4996. Total energy = 3494.0179 kcal/mol (3486.9152 without restraints) Performing minimization step: 4997. Total energy = 3493.6923 kcal/mol (3486.5913 without restraints) Performing minimization step: 4998. Total energy = 3493.3672 kcal/mol (3486.2678 without restraints) Performing minimization step: 4999. Total energy = 3493.0422 kcal/mol (3485.9444 without restraints) Performing minimization step: 5000. Total energy = 3492.7173 kcal/mol (3485.6212 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/6ecefe47/tmp/CPMB2_refx/CPMB2_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to CPMB2_refx.pdb DONE!