==> JEV_85_simRNA_frame_100ns - Copy-for mtiopenscreen_rpr.pdb <==
Traceback (most recent call last):
  File "/home/ubuntu/miniconda3/bin/rna_pdb_toolsx.py", line 7, in <module>
    exec(compile(f.read(), __file__, 'exec'))
  File "/home/ubuntu/rna-tools/rna_tools/rna_pdb_toolsx.py", line 466, in <module>
    remarks = s.get_rnapuzzle_ready(args.renumber_residues, fix_missing_atoms=fix_missing_atom,
  File "/home/ubuntu/rna-tools/rna_tools/rna_tools_lib.py", line 1107, in get_rnapuzzle_ready
    self.write(ftmp, verbose=False)
  File "/home/ubuntu/rna-tools/rna_tools/rna_tools_lib.py", line 901, in write
    raise Exception('Nothing to write. Is the input a PDB file? ', self.fn)
Exception: ('Nothing to write. Is the input a PDB file? ', '/home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7331ac6c/JEV_85_simRNA_frame_100ns - Copy-for mtiopenscreen.pdb')

==> JEV_85_simRNA_frame_100ns_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Mon Mar  2 05:40:20 2026
REMARK 250 Fixed atoms/residues:
REMARK 250  - add OP3 at the beginning of the chain  in chain: A <Residue C het=  resseq=1 icode= > residue # 1
ATOM      1  P     C A   1      79.254  75.126  18.336  1.00 11.89           P  
ATOM      2  OP1   C A   1      78.069  74.381  17.848  1.00 14.35           O  
ATOM      3  OP2   C A   1      79.111  76.168  19.366  1.00 12.68           O  
ATOM      4  O5'   C A   1      80.367  74.128  18.873  1.00 10.34           O  

==> JEV_85_simRNA_frame_100ns_rpr_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Mon Mar  2 05:40:20 2026
ATOM      1  P     C A   1      79.254  75.126  18.336  1.00 11.89           P  
ATOM      2  OP1   C A   1      78.069  74.381  17.848  1.00 14.35           O  
ATOM      3  OP2   C A   1      79.111  76.168  19.366  1.00 12.68           O  
ATOM      4  O5'   C A   1      80.367  74.128  18.873  1.00 10.34           O  
ATOM      5  C5'   C A   1      82.269  71.057  17.977  1.00  0.00           C  
ATOM      6  C4'   C A   1      81.909  72.297  18.737  1.00  0.00           C  
DONE!