============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 737 'H5' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 741 1H2' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 742 2H2' DA A 24 ... failed. Atom erased. Error: recognition of atom ATOM 770 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 774 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 775 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 797 C5M DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 801 HN3 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 802 1HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 803 2HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 804 3HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 829 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 833 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 862 'H5' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 866 1H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 867 2H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 894 'H5' DA A 29 ... failed. Atom erased. Error: recognition of atom ATOM 898 1H2' DA A 29 ... failed. Atom erased. Error: recognition of atom ATOM 899 2H2' DA A 29 ... failed. Atom erased. Error: recognition of atom ATOM 921 C5M DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 925 HN3 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 926 1HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 927 2HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 928 3HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 956 'H5' DG A 31 ... failed. Atom erased. Error: recognition of atom ATOM 960 1H2' DG A 31 ... failed. Atom erased. Error: recognition of atom ATOM 961 2H2' DG A 31 ... failed. Atom erased. Error: recognition of atom ATOM 989 'H5' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 993 1H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 994 2H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1019 'H5' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1023 1H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1024 2H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1049 'H5' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1053 1H2' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1054 2H2' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1082 'H5' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1086 1H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1087 2H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1114 'H5' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1118 1H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1119 2H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1141 C5M DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1145 HN3 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1146 1HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1147 2HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1148 3HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1170 C5M DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1174 HN3 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1175 1HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1176 2HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1177 3HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1202 'H5' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1206 1H2' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1207 2H2' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1234 'H5' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1238 1H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1239 2H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1261 C5M DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1265 HN3 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1266 1HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1267 2HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1268 3HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1293 'H5' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1297 1H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1298 2H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1320 C5M DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1324 HN3 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1325 1HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1326 2HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1327 3HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1349 C5M DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1353 HN3 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1354 1HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1355 2HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1356 3HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1378 C5M DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1382 HN3 DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1383 1HM5 DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1384 2HM5 DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1385 3HM5 DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1410 'H5' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1414 1H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1415 2H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1437 C5M DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1441 HN3 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1442 1HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1443 2HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1444 3HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1471 'H5' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1475 1H2' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1476 2H2' DA A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1504 'H5' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1508 1H2' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1509 2H2' DG A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1536 'H5' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1540 1H2' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1541 2H2' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1569 'H5' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1573 1H2' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1574 2H2' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1602 'H5' DG A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1606 1H2' DG A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1607 2H2' DG A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1635 'H5' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1639 1H2' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1640 2H2' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1667 'H5' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1671 1H2' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1672 2H2' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1694 C5M DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1698 HN3 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1699 1HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1700 2HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1701 3HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1728 'H5' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1732 1H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1733 2H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1755 C5M DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1759 HN3 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1760 1HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1761 2HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1762 3HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1790 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1794 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1795 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1817 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1821 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1822 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1823 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1824 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1852 'H5' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1856 1H2' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1857 2H2' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1882 'H5' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1886 1H2' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1887 2H2' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1914 'H5' DA A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1918 1H2' DA A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1919 2H2' DA A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1941 C5M DT A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1945 HN3 DT A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1946 1HM5 DT A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1947 2HM5 DT A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1948 3HM5 DT A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1976 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1980 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1981 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2003 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2007 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2008 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2009 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2010 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2035 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2039 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2040 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2068 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2072 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2073 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2100 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2104 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2105 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2130 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2134 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2135 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2163 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2167 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2168 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2195 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2199 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2200 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2228 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2232 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2233 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2261 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2265 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2266 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2288 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2292 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2293 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2294 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2295 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2320 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2324 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2325 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2347 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2351 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2352 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2353 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2354 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2381 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2385 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2386 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2414 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2418 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2419 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2446 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2450 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2451 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2478 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2482 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2483 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2505 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2509 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2510 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2511 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2512 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2539 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2543 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2544 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2569 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2573 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2574 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2599 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2603 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2604 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2631 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2635 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2636 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2664 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2665 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2669 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2670 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 -0.306 -0.488 -2.231 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.974 -1.060 -0.469 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.287 0.597 3.876 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.816 -0.638 4.427 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 3.273 -4.405 4.575 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -1.675 -5.403 4.798 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -1.324 -6.647 5.992 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -4.566 -4.194 1.508 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -0.594 -5.860 -0.158 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -0.453 -5.093 -0.923 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -1.106 -6.718 -0.606 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 0.385 -6.183 0.204 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -0.611 -9.861 6.784 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -3.283 -10.419 3.920 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -1.536 -11.347 3.629 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -2.858 -15.725 7.482 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -1.690 -18.494 3.733 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 0.032 -17.490 3.589 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -0.128 -18.058 9.480 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -1.671 -22.560 10.616 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -0.017 -23.377 9.847 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 1.937 -23.191 11.710 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 2.294 -27.198 13.158 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 3.637 -27.032 11.686 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 5.978 -26.942 14.749 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 7.176 -29.634 11.125 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 8.170 -30.496 12.294 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 8.295 -28.275 7.243 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 7.249 -24.643 9.878 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 6.645 -24.120 9.137 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 8.271 -24.262 9.846 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 6.832 -24.472 10.870 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 10.888 -30.922 14.175 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 12.037 -33.426 10.765 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 13.081 -31.856 10.102 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 16.298 -32.869 11.885 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 17.891 -33.140 7.868 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 18.462 -31.242 8.133 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 20.271 -29.659 10.286 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 22.078 -28.355 6.485 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 21.430 -26.727 7.448 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 25.666 -26.569 8.612 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 23.741 -22.935 6.791 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 25.352 -22.249 6.629 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 20.623 -20.283 8.097 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 21.005 -23.810 10.987 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 19.942 -24.004 11.103 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 21.347 -23.146 11.780 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 21.556 -24.747 11.034 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 28.340 -20.809 7.653 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 24.479 -17.836 8.437 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 25.652 -16.528 8.348 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 21.010 -19.162 11.058 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 24.716 -21.850 11.662 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 24.182 -22.798 11.657 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 24.858 -21.515 12.690 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 25.684 -21.974 11.182 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 28.916 -14.638 8.844 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 27.771 -10.506 7.854 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 27.125 -10.504 9.746 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 30.107 -9.209 11.627 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 27.121 -6.487 13.427 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 27.038 -7.843 14.893 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 29.664 -5.152 16.274 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 25.692 -4.747 18.745 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 26.354 -6.275 19.850 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 27.058 -5.627 21.436 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 28.675 -6.443 25.506 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 30.406 -5.782 24.756 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 31.493 -5.377 27.466 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 28.948 -8.028 30.601 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 30.416 -9.349 30.289 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 31.377 -3.714 33.218 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 31.208 -6.640 36.818 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 32.708 -7.906 36.437 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 35.402 -6.804 38.979 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 36.304 -10.837 40.241 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 37.682 -10.712 38.798 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 40.936 -9.639 40.675 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 43.270 -12.607 38.544 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 43.360 -11.314 37.022 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 46.426 -7.981 41.144 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 50.030 -8.880 38.251 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 49.051 -7.881 36.824 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 50.659 -4.631 36.698 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 51.935 -4.583 32.799 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 50.038 -4.035 32.484 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 47.863 -1.149 33.963 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 47.695 1.042 29.671 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 48.756 -0.416 28.809 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 24 44.601 -2.427 27.792 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 24 47.718 -3.198 24.247 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 24 48.358 -4.791 25.271 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 45.197 -8.484 25.508 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 48.165 -11.048 24.903 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 46.772 -11.808 26.118 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 26 42.230 -13.344 22.802 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 26 42.691 -14.065 27.319 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 26 42.645 -15.741 26.785 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 26 41.756 -10.948 30.618 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 26 39.591 -9.843 26.753 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 26 39.997 -8.849 26.672 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 26 38.644 -9.840 27.268 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 26 39.508 -10.312 25.787 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 39.811 -18.318 26.796 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 38.807 -18.792 31.054 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 37.683 -17.175 30.706 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 28 34.165 -17.435 28.640 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 28 33.129 -15.900 32.000 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 28 32.323 -14.712 30.609 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 29 29.370 -20.146 30.615 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 29 26.918 -18.318 34.349 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 29 26.069 -16.972 33.139 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 30 23.996 -17.545 30.064 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 30 25.051 -14.978 28.860 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 30 23.475 -14.197 28.799 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 30 27.748 -13.665 26.205 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 30 28.277 -18.179 26.795 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 30 29.368 -18.231 26.838 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 30 27.954 -18.334 25.761 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 30 27.860 -18.975 27.418 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 31 20.088 -13.714 28.194 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 31 20.238 -9.501 27.217 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 31 20.421 -10.188 25.349 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 32 17.861 -12.090 23.060 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 32 19.093 -7.965 21.322 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 32 18.983 -9.117 19.692 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 33 14.051 -12.220 20.165 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 33 12.514 -11.784 17.734 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 33 13.519 -13.300 16.906 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 34 12.831 -15.901 16.504 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 34 10.419 -16.287 12.834 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 34 9.540 -14.606 13.464 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 35 13.609 -12.860 11.913 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 35 16.847 -10.388 10.398 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 35 17.383 -12.108 9.530 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 36 15.916 -12.429 5.857 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 36 19.111 -13.868 3.864 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 36 18.475 -15.608 4.614 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 37 16.572 -15.920 1.288 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 37 18.945 -19.739 2.554 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 37 18.671 -20.242 0.891 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 37 17.785 -22.090 5.987 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 37 15.143 -18.341 5.856 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 37 15.073 -18.206 6.932 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 37 14.281 -18.900 5.496 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 37 15.181 -17.372 5.365 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 38 16.623 -21.208 -2.073 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 38 17.028 -25.172 0.428 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 38 16.580 -25.997 -1.059 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 38 15.568 -25.679 4.503 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 38 14.607 -21.420 3.133 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 38 15.050 -20.883 3.976 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 38 13.541 -21.573 3.332 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 38 14.712 -20.809 2.232 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 39 13.810 -27.173 -3.181 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 39 13.671 -30.649 -0.314 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 39 12.282 -29.645 0.715 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 40 9.932 -31.859 -1.469 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 40 9.148 -34.735 1.694 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 40 7.928 -33.318 2.402 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 41 5.029 -35.190 0.057 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 41 3.981 -33.072 4.383 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 41 2.460 -33.954 4.328 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 41 4.913 -28.963 5.471 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 41 5.640 -29.607 0.969 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 41 6.580 -29.057 0.932 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 41 4.821 -28.946 0.681 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 41 5.685 -30.446 0.275 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 42 -0.807 -34.628 3.645 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 42 -2.478 -33.423 7.569 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 42 -2.507 -31.618 6.711 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 43 -6.370 -32.884 5.200 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 43 -5.626 -30.937 3.278 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 43 -6.924 -29.830 2.849 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 43 -4.546 -25.218 4.182 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 43 -1.986 -28.940 3.232 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 43 -1.183 -28.744 3.940 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 43 -1.721 -28.530 2.257 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 43 -2.139 -30.014 3.144 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 44 -9.378 -31.115 7.478 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 44 -13.769 -31.219 9.104 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 44 -13.002 -32.019 10.470 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 44 -17.301 -31.410 6.111 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 44 -13.398 -32.370 3.872 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 44 -13.516 -31.644 3.061 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 44 -13.798 -33.336 3.539 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 44 -12.330 -32.489 4.082 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 45 -12.081 -36.047 9.607 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 45 -16.735 -34.739 10.581 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 45 -16.502 -35.575 12.111 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 45 -19.379 -34.212 6.696 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 45 -15.362 -36.078 5.536 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 45 -15.117 -35.356 4.772 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 45 -15.855 -36.940 5.108 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 45 -14.479 -36.374 6.083 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 46 -16.674 -39.177 12.440 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 46 -21.167 -39.124 12.840 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 46 -21.062 -39.692 10.927 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 47 -21.041 -43.300 13.322 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 47 -23.560 -43.166 9.071 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 47 -24.215 -44.719 9.574 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 47 -21.891 -42.404 5.351 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 47 -18.680 -41.366 8.418 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 47 -18.413 -40.398 8.000 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 47 -18.012 -42.132 8.024 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 47 -18.594 -41.333 9.502 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 48 -24.367 -45.888 9.764 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 48 -24.839 -49.930 6.797 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 48 -23.049 -49.467 6.036 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 49 -22.054 -52.948 7.341 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 49 -22.273 -53.687 2.931 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 49 -20.430 -52.931 2.762 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 50 -18.895 -55.568 2.310 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 50 -18.890 -55.109 -1.150 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 50 -16.997 -54.710 -0.646 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 51 -13.925 -57.203 0.069 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 51 -11.507 -55.139 -1.542 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 51 -10.739 -55.564 0.255 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 52 -7.543 -57.730 0.300 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 52 -5.786 -55.213 1.708 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 52 -4.334 -56.522 2.130 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 53 -1.927 -54.342 -1.387 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 53 0.690 -54.555 -1.356 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 53 0.380 -53.201 -2.793 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 54 2.989 -51.573 -0.703 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 54 6.685 -49.790 1.202 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 54 7.311 -50.947 -0.303 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 55 7.348 -46.437 -2.896 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 55 9.530 -43.875 -4.432 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 55 11.011 -44.747 -4.056 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 55 9.322 -40.314 -6.581 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 55 6.416 -40.280 -3.071 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 55 5.524 -39.987 -3.630 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 55 6.886 -39.382 -2.657 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 55 6.118 -40.933 -2.247 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 56 12.884 -43.794 -0.116 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 56 15.807 -40.810 -0.988 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 56 14.474 -39.585 -0.140 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 57 12.253 -42.862 2.475 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 57 9.896 -45.285 4.727 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 57 10.111 -44.426 6.247 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 57 9.079 -49.394 5.055 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 57 11.374 -48.807 1.080 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 57 10.646 -49.279 0.421 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 57 12.125 -49.542 1.376 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 57 11.862 -47.988 0.551 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 15.686 -43.837 8.345 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 14.667 -41.916 12.193 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 12.886 -42.825 12.192 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 14.204 -47.499 12.152 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 10.415 -49.710 10.566 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 10.869 -50.956 11.723 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 9.693 -49.878 6.322 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 13.513 -47.416 7.230 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 13.247 -46.550 6.634 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 14.147 -48.085 6.654 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 14.029 -47.103 8.132 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 60 15.801 -50.149 13.610 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 60 17.128 -53.034 15.287 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 60 17.603 -52.881 13.351 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 61 20.307 -47.499 12.849 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 61 23.081 -47.826 10.289 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 61 22.727 -45.878 10.018 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 62 26.182 -47.564 12.856 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 62 29.710 -48.805 13.217 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 62 28.696 -49.443 11.617 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 63 28.753 -48.150 6.993 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 63 25.911 -46.870 6.230 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 63 24.409 -46.718 7.133 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 63 24.251 -41.839 9.222 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 63 28.325 -42.249 7.165 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 63 28.900 -41.723 7.921 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 63 28.025 -41.560 6.380 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 63 28.917 -43.056 6.744 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 21.485 -51.056 10.372 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 21.386 -55.689 10.905 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 20.070 -54.693 12.032 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 16.185 -55.167 9.116 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 15.394 -55.147 6.921 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 13.785 -54.567 7.332 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 16.261 -49.337 8.323 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 14.120 -50.803 4.551 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 14.964 -50.759 3.861 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 13.559 -49.867 4.492 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 13.467 -51.628 4.265 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 10.907 -56.484 11.320 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 8.892 -59.051 14.776 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 7.643 -57.493 14.847 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 3.713 -57.411 12.557 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 3.324 -54.653 14.485 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 2.357 -54.295 12.772 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -0.721 -53.981 13.519 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -1.098 -50.451 13.894 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -1.589 -50.769 11.983 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -6.464 -53.961 13.457 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -3.597 -55.611 10.141 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -3.267 -56.551 11.875 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -7.607 -55.290 8.823 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -11.356 -55.398 6.864 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -11.830 -56.998 7.966 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -10.097 -52.206 8.814 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -7.309 -49.159 10.658 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -6.742 -49.471 8.767 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -8.453 -46.373 6.819 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -5.045 -44.826 4.884 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 -5.746 -45.965 3.397 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 -7.263 -43.504 1.413 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 -5.003 -45.211 -2.148 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 -6.758 -46.115 -2.463 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 -8.930 -43.670 -4.298 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 -11.567 -47.442 -4.104 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 -12.325 -46.805 -5.557 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 -13.068 -49.245 -0.240 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 -10.861 -45.237 0.577 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 -10.222 -45.612 1.371 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 -11.755 -44.786 1.001 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 -10.324 -44.504 -0.017 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 -14.961 -45.163 -6.830 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 -17.936 -48.326 -5.992 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 -18.144 -47.296 -4.292 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 -20.833 -46.017 -6.893 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 -23.105 -46.802 -2.877 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 -24.496 -46.534 -3.921 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 -21.223 -45.262 0.993 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 -18.336 -44.016 -2.249 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 -17.463 -44.567 -1.916 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 -18.322 -43.010 -1.837 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 -18.358 -43.973 -3.332 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 -23.754 -43.010 -3.658 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 -27.367 -42.470 -0.748 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 -25.934 -41.370 0.107 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 -28.082 -38.394 -1.014 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 -28.845 -38.620 3.503 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 -27.040 -37.787 3.717 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 -28.644 -34.402 4.255 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 -27.778 -33.354 8.337 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -26.018 -32.838 7.542 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 -27.297 -29.110 7.062 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 -23.794 -28.567 9.842 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 -22.620 -28.522 8.224 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 -23.060 -24.236 8.124 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 -19.713 -26.719 5.453 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 -18.588 -25.381 5.656 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 -19.465 -28.941 2.000 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 -23.923 -28.625 3.037 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 -24.167 -29.691 3.018 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 -24.131 -28.199 2.049 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 -24.562 -28.131 3.774 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 -20.286 -21.077 7.159 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 -17.249 -22.920 10.481 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 -15.514 -22.478 9.592 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 -18.963 -23.247 11.978 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 -22.000 -25.808 10.416 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 -20.925 -26.806 11.774 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 -22.850 -27.051 14.950 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 -21.716 -31.313 15.307 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 -20.203 -30.531 16.355 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 -22.020 -31.078 19.727 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 -17.998 -33.058 20.755 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 -17.269 -31.230 21.107 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 -19.024 -30.678 24.147 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -15.346 -30.508 25.995 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -16.238 -28.720 25.947 1.00 0.00 H Number of atoms: 2737 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2955 Number of angles built: 5367 Number of dihedrals built: 8023 Number of impropers built: 586 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3735894 Number of van der Waals pairs: 303036 Number of H-bonds built: 52 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 12 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 186329.0445 kcal/mol (185784.7870 without restraints) Performing minimization step: 2. Total energy = 181914.1502 kcal/mol (181395.0641 without restraints) Performing minimization step: 3. Total energy = 177704.8015 kcal/mol (177209.0856 without restraints) Performing minimization step: 4. Total energy = 173686.4706 kcal/mol (173212.4942 without restraints) Performing minimization step: 5. Total energy = 169845.9928 kcal/mol (169392.2769 without restraints) Performing minimization step: 6. Total energy = 166171.4140 kcal/mol (165736.6140 without restraints) Performing minimization step: 7. Total energy = 162651.8566 kcal/mol (162234.7478 without restraints) Performing minimization step: 8. Total energy = 159277.4011 kcal/mol (158876.8652 without restraints) Performing minimization step: 9. Total energy = 156038.9822 kcal/mol (155653.9962 without restraints) Performing minimization step: 10. Total energy = 152928.2973 kcal/mol (152557.9235 without restraints) Performing minimization step: 11. Total energy = 149937.7270 kcal/mol (149581.1036 without restraints) Performing minimization step: 12. Total energy = 147060.2640 kcal/mol (146716.5977 without restraints) Performing minimization step: 13. Total energy = 144289.4513 kcal/mol (143958.0105 without restraints) Performing minimization step: 14. Total energy = 141619.3274 kcal/mol (141299.4359 without restraints) Performing minimization step: 15. Total energy = 139044.3788 kcal/mol (138735.4108 without restraints) Performing minimization step: 16. Total energy = 136559.4973 kcal/mol (136260.8723 without restraints) Performing minimization step: 17. Total energy = 134159.9421 kcal/mol (133871.1209 without restraints) Performing minimization step: 18. Total energy = 131841.3066 kcal/mol (131561.7878 without restraints) Performing minimization step: 19. Total energy = 129599.4890 kcal/mol (129328.8054 without restraints) Performing minimization step: 20. Total energy = 127430.6656 kcal/mol (127168.3814 without restraints) Performing minimization step: 21. Total energy = 125331.2672 kcal/mol (125076.9755 without restraints) Performing minimization step: 22. Total energy = 123297.9584 kcal/mol (123051.2785 without restraints) Performing minimization step: 23. Total energy = 121327.6181 kcal/mol (121088.1936 without restraints) Performing minimization step: 24. Total energy = 119417.3226 kcal/mol (119184.8195 without restraints) Performing minimization step: 25. Total energy = 117564.3303 kcal/mol (117338.4353 without restraints) Performing minimization step: 26. Total energy = 115766.0676 kcal/mol (115546.4863 without restraints) Performing minimization step: 27. Total energy = 114020.1163 kcal/mol (113806.5720 without restraints) Performing minimization step: 28. Total energy = 112324.2022 kcal/mol (112116.4347 without restraints) Performing minimization step: 29. Total energy = 110676.1844 kcal/mol (110473.9485 without restraints) Performing minimization step: 30. Total energy = 109074.0461 kcal/mol (108877.1106 without restraints) Performing minimization step: 31. Total energy = 107515.8853 kcal/mol (107324.0323 without restraints) Performing minimization step: 32. Total energy = 105999.9073 kcal/mol (105812.9311 without restraints) Performing minimization step: 33. Total energy = 104524.4173 kcal/mol (104342.1233 without restraints) Performing minimization step: 34. Total energy = 103087.8132 kcal/mol (102910.0178 without restraints) Performing minimization step: 35. Total energy = 101688.5799 kcal/mol (101515.1090 without restraints) Performing minimization step: 36. Total energy = 100325.2832 kcal/mol (100155.9721 without restraints) Performing minimization step: 37. Total energy = 98996.5647 kcal/mol (98831.2573 without restraints) Performing minimization step: 38. Total energy = 97701.1364 kcal/mol (97539.6849 without restraints) Performing minimization step: 39. Total energy = 96437.7778 kcal/mol (96280.0417 without restraints) Performing minimization step: 40. Total energy = 95205.3292 kcal/mol (95051.1753 without restraints) Performing minimization step: 41. Total energy = 94002.6898 kcal/mol (93851.9913 without restraints) Performing minimization step: 42. Total energy = 92828.8130 kcal/mol (92681.4496 without restraints) Performing minimization step: 43. Total energy = 91682.7037 kcal/mol (91538.5608 without restraints) Performing minimization step: 44. Total energy = 90563.4148 kcal/mol (90422.3834 without restraints) Performing minimization step: 45. Total energy = 89470.0446 kcal/mol (89332.0207 without restraints) Performing minimization step: 46. Total energy = 88401.7335 kcal/mol (88266.6182 without restraints) Performing minimization step: 47. Total energy = 87357.6623 kcal/mol (87225.3611 without restraints) Performing minimization step: 48. Total energy = 86337.0491 kcal/mol (86207.4720 without restraints) Performing minimization step: 49. Total energy = 85339.1476 kcal/mol (85212.2084 without restraints) Performing minimization step: 50. Total energy = 84363.2454 kcal/mol (84238.8619 without restraints) Performing minimization step: 51. Total energy = 83408.6606 kcal/mol (83286.7541 without restraints) Performing minimization step: 52. Total energy = 82474.7418 kcal/mol (82355.2371 without restraints) Performing minimization step: 53. Total energy = 81560.8650 kcal/mol (81443.6901 without restraints) Performing minimization step: 54. Total energy = 80666.4334 kcal/mol (80551.5194 without restraints) Performing minimization step: 55. Total energy = 79790.8748 kcal/mol (79678.1555 without restraints) Performing minimization step: 56. Total energy = 78933.6404 kcal/mol (78823.0524 without restraints) Performing minimization step: 57. Total energy = 78094.2043 kcal/mol (77985.6869 without restraints) Performing minimization step: 58. Total energy = 77272.0618 kcal/mol (77165.5567 without restraints) Performing minimization step: 59. Total energy = 76466.7277 kcal/mol (76362.1785 without restraints) Performing minimization step: 60. Total energy = 75677.7365 kcal/mol (75575.0895 without restraints) Performing minimization step: 61. Total energy = 74904.6403 kcal/mol (74803.8436 without restraints) Performing minimization step: 62. Total energy = 74147.0084 kcal/mol (74048.0122 without restraints) Performing minimization step: 63. Total energy = 73404.4263 kcal/mol (73307.1826 without restraints) Performing minimization step: 64. Total energy = 72676.4949 kcal/mol (72580.9575 without restraints) Performing minimization step: 65. Total energy = 71962.8301 kcal/mol (71868.9543 without restraints) Performing minimization step: 66. Total energy = 71263.0608 kcal/mol (71170.8038 without restraints) Performing minimization step: 67. Total energy = 70576.8300 kcal/mol (70486.1504 without restraints) Performing minimization step: 68. Total energy = 69903.7927 kcal/mol (69814.6505 without restraints) Performing minimization step: 69. Total energy = 69243.6171 kcal/mol (69155.9737 without restraints) Performing minimization step: 70. Total energy = 68595.9815 kcal/mol (68509.7997 without restraints) Performing minimization step: 71. Total energy = 67960.5751 kcal/mol (67875.8189 without restraints) Performing minimization step: 72. Total energy = 67337.0983 kcal/mol (67253.7328 without restraints) Performing minimization step: 73. Total energy = 66725.2610 kcal/mol (66643.2526 without restraints) Performing minimization step: 74. Total energy = 66124.7827 kcal/mol (66044.0989 without restraints) Performing minimization step: 75. Total energy = 65535.3917 kcal/mol (65456.0008 without restraints) Performing minimization step: 76. Total energy = 64956.8255 kcal/mol (64878.6971 without restraints) Performing minimization step: 77. Total energy = 64388.8294 kcal/mol (64311.9339 without restraints) Performing minimization step: 78. Total energy = 63831.1568 kcal/mol (63755.4655 without restraints) Performing minimization step: 79. Total energy = 63283.5685 kcal/mol (63209.0536 without restraints) Performing minimization step: 80. Total energy = 62745.8328 kcal/mol (62672.4674 without restraints) Performing minimization step: 81. Total energy = 62217.7246 kcal/mol (62145.4825 without restraints) Performing minimization step: 82. Total energy = 61699.0261 kcal/mol (61627.8822 without restraints) Performing minimization step: 83. Total energy = 61189.5257 kcal/mol (61119.4551 without restraints) Performing minimization step: 84. Total energy = 60689.0177 kcal/mol (60619.9967 without restraints) Performing minimization step: 85. Total energy = 60197.3023 kcal/mol (60129.3075 without restraints) Performing minimization step: 86. Total energy = 59714.1856 kcal/mol (59647.1944 without restraints) Performing minimization step: 87. Total energy = 59239.4789 kcal/mol (59173.4694 without restraints) Performing minimization step: 88. Total energy = 58772.9992 kcal/mol (58707.9503 without restraints) Performing minimization step: 89. Total energy = 58314.5685 kcal/mol (58250.4594 without restraints) Performing minimization step: 90. Total energy = 57864.0133 kcal/mol (57800.8235 without restraints) Performing minimization step: 91. Total energy = 57421.1648 kcal/mol (57358.8749 without restraints) Performing minimization step: 92. Total energy = 56985.8590 kcal/mol (56924.4500 without restraints) Performing minimization step: 93. Total energy = 56557.9362 kcal/mol (56497.3893 without restraints) Performing minimization step: 94. Total energy = 56137.2410 kcal/mol (56077.5382 without restraints) Performing minimization step: 95. Total energy = 55723.6219 kcal/mol (55664.7455 without restraints) Performing minimization step: 96. Total energy = 55316.9314 kcal/mol (55258.8643 without restraints) Performing minimization step: 97. Total energy = 54917.0258 kcal/mol (54859.7511 without restraints) Performing minimization step: 98. Total energy = 54523.7649 kcal/mol (54467.2664 without restraints) Performing minimization step: 99. Total energy = 54137.0123 kcal/mol (54081.2741 without restraints) Performing minimization step: 100. Total energy = 53756.6349 kcal/mol (53701.6413 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 53382.5029 kcal/mol (53328.2389 without restraints) Performing minimization step: 102. Total energy = 53014.4893 kcal/mol (52960.9403 without restraints) Performing minimization step: 103. Total energy = 52652.4711 kcal/mol (52599.6225 without restraints) Performing minimization step: 104. Total energy = 52296.3276 kcal/mol (52244.1654 without restraints) Performing minimization step: 105. Total energy = 51945.9413 kcal/mol (51894.4518 without restraints) Performing minimization step: 106. Total energy = 51601.1974 kcal/mol (51550.3672 without restraints) Performing minimization step: 107. Total energy = 51261.9839 kcal/mol (51211.8000 without restraints) Performing minimization step: 108. Total energy = 50928.1914 kcal/mol (50878.6411 without restraints) Performing minimization step: 109. Total energy = 50599.7134 kcal/mol (50550.7841 without restraints) Performing minimization step: 110. Total energy = 50276.4451 kcal/mol (50228.1246 without restraints) Performing minimization step: 111. Total energy = 49958.2851 kcal/mol (49910.5617 without restraints) Performing minimization step: 112. Total energy = 49645.1337 kcal/mol (49597.9957 without restraints) Performing minimization step: 113. Total energy = 49336.8937 kcal/mol (49290.3297 without restraints) Performing minimization step: 114. Total energy = 49033.4701 kcal/mol (48987.4690 without restraints) Performing minimization step: 115. Total energy = 48734.7699 kcal/mol (48689.3210 without restraints) Performing minimization step: 116. Total energy = 48440.7024 kcal/mol (48395.7950 without restraints) Performing minimization step: 117. Total energy = 48151.1790 kcal/mol (48106.8028 without restraints) Performing minimization step: 118. Total energy = 47866.1128 kcal/mol (47822.2577 without restraints) Performing minimization step: 119. Total energy = 47585.4191 kcal/mol (47542.0751 without restraints) Performing minimization step: 120. Total energy = 47309.0148 kcal/mol (47266.1723 without restraints) Performing minimization step: 121. Total energy = 47036.8189 kcal/mol (46994.4684 without restraints) Performing minimization step: 122. Total energy = 46768.7520 kcal/mol (46726.8842 without restraints) Performing minimization step: 123. Total energy = 46504.7364 kcal/mol (46463.3423 without restraints) Performing minimization step: 124. Total energy = 46244.6966 kcal/mol (46203.7672 without restraints) Performing minimization step: 125. Total energy = 45988.5575 kcal/mol (45948.0844 without restraints) Performing minimization step: 126. Total energy = 45736.2469 kcal/mol (45696.2214 without restraints) Performing minimization step: 127. Total energy = 45487.6935 kcal/mol (45448.1073 without restraints) Performing minimization step: 128. Total energy = 45242.8280 kcal/mol (45203.6730 without restraints) Performing minimization step: 129. Total energy = 45001.5816 kcal/mol (44962.8498 without restraints) Performing minimization step: 130. Total energy = 44763.8878 kcal/mol (44725.5715 without restraints) Performing minimization step: 131. Total energy = 44529.6814 kcal/mol (44491.7729 without restraints) Performing minimization step: 132. Total energy = 44298.8980 kcal/mol (44261.3897 without restraints) Performing minimization step: 133. Total energy = 44071.4755 kcal/mol (44034.3603 without restraints) Performing minimization step: 134. Total energy = 43847.3525 kcal/mol (43810.6233 without restraints) Performing minimization step: 135. Total energy = 43626.4688 kcal/mol (43590.1182 without restraints) Performing minimization step: 136. Total energy = 43408.7653 kcal/mol (43372.7868 without restraints) Performing minimization step: 137. Total energy = 43194.1848 kcal/mol (43158.5715 without restraints) Performing minimization step: 138. Total energy = 42982.6706 kcal/mol (42947.4159 without restraints) Performing minimization step: 139. Total energy = 42774.1672 kcal/mol (42739.2646 without restraints) Performing minimization step: 140. Total energy = 42568.6207 kcal/mol (42534.0640 without restraints) Performing minimization step: 141. Total energy = 42365.9780 kcal/mol (42331.7609 without restraints) Performing minimization step: 142. Total energy = 42166.1869 kcal/mol (42132.3035 without restraints) Performing minimization step: 143. Total energy = 41969.1966 kcal/mol (41935.6407 without restraints) Performing minimization step: 144. Total energy = 41774.9569 kcal/mol (41741.7228 without restraints) Performing minimization step: 145. Total energy = 41583.4190 kcal/mol (41550.5009 without restraints) Performing minimization step: 146. Total energy = 41394.5349 kcal/mol (41361.9271 without restraints) Performing minimization step: 147. Total energy = 41208.2573 kcal/mol (41175.9546 without restraints) Performing minimization step: 148. Total energy = 41024.5404 kcal/mol (40992.5372 without restraints) Performing minimization step: 149. Total energy = 40843.3386 kcal/mol (40811.6296 without restraints) Performing minimization step: 150. Total energy = 40664.6080 kcal/mol (40633.1880 without restraints) Performing minimization step: 151. Total energy = 40488.3048 kcal/mol (40457.1689 without restraints) Performing minimization step: 152. Total energy = 40314.3866 kcal/mol (40283.5297 without restraints) Performing minimization step: 153. Total energy = 40142.8115 kcal/mol (40112.2287 without restraints) Performing minimization step: 154. Total energy = 39973.5386 kcal/mol (39943.2251 without restraints) Performing minimization step: 155. Total energy = 39806.5275 kcal/mol (39776.4787 without restraints) Performing minimization step: 156. Total energy = 39641.7390 kcal/mol (39611.9501 without restraints) Performing minimization step: 157. Total energy = 39479.1343 kcal/mol (39449.6009 without restraints) Performing minimization step: 158. Total energy = 39318.6755 kcal/mol (39289.3932 without restraints) Performing minimization step: 159. Total energy = 39160.3256 kcal/mol (39131.2901 without restraints) Performing minimization step: 160. Total energy = 39004.0476 kcal/mol (38975.2545 without restraints) Performing minimization step: 161. Total energy = 38849.8062 kcal/mol (38821.2514 without restraints) Performing minimization step: 162. Total energy = 38697.5662 kcal/mol (38669.2455 without restraints) Performing minimization step: 163. Total energy = 38547.2935 kcal/mol (38519.2029 without restraints) Performing minimization step: 164. Total energy = 38398.9533 kcal/mol (38371.0890 without restraints) Performing minimization step: 165. Total energy = 38252.5135 kcal/mol (38224.8715 without restraints) Performing minimization step: 166. Total energy = 38107.9407 kcal/mol (38080.5171 without restraints) Performing minimization step: 167. Total energy = 37965.2032 kcal/mol (37937.9944 without restraints) Performing minimization step: 168. Total energy = 37824.2699 kcal/mol (37797.2722 without restraints) Performing minimization step: 169. Total energy = 37685.1100 kcal/mol (37658.3199 without restraints) Performing minimization step: 170. Total energy = 37547.6932 kcal/mol (37521.1070 without restraints) Performing minimization step: 171. Total energy = 37411.9900 kcal/mol (37385.6044 without restraints) Performing minimization step: 172. Total energy = 37277.9712 kcal/mol (37251.7826 without restraints) Performing minimization step: 173. Total energy = 37145.6083 kcal/mol (37119.6135 without restraints) Performing minimization step: 174. Total energy = 37014.8730 kcal/mol (36989.0688 without restraints) Performing minimization step: 175. Total energy = 36885.7384 kcal/mol (36860.1214 without restraints) Performing minimization step: 176. Total energy = 36758.1768 kcal/mol (36732.7439 without restraints) Performing minimization step: 177. Total energy = 36632.1626 kcal/mol (36606.9107 without restraints) Performing minimization step: 178. Total energy = 36507.6694 kcal/mol (36482.5955 without restraints) Performing minimization step: 179. Total energy = 36384.6715 kcal/mol (36359.7727 without restraints) Performing minimization step: 180. Total energy = 36263.1441 kcal/mol (36238.4173 without restraints) Performing minimization step: 181. Total energy = 36143.0624 kcal/mol (36118.5048 without restraints) Performing minimization step: 182. Total energy = 36024.4023 kcal/mol (36000.0111 without restraints) Performing minimization step: 183. Total energy = 35907.1398 kcal/mol (35882.9122 without restraints) Performing minimization step: 184. Total energy = 35791.2521 kcal/mol (35767.1854 without restraints) Performing minimization step: 185. Total energy = 35676.7160 kcal/mol (35652.8074 without restraints) Performing minimization step: 186. Total energy = 35563.5094 kcal/mol (35539.7565 without restraints) Performing minimization step: 187. Total energy = 35451.6106 kcal/mol (35428.0107 without restraints) Performing minimization step: 188. Total energy = 35340.9968 kcal/mol (35317.5473 without restraints) Performing minimization step: 189. Total energy = 35231.6472 kcal/mol (35208.3457 without restraints) Performing minimization step: 190. Total energy = 35123.5414 kcal/mol (35100.3854 without restraints) Performing minimization step: 191. Total energy = 35016.6579 kcal/mol (34993.6450 without restraints) Performing minimization step: 192. Total energy = 34910.9769 kcal/mol (34888.1048 without restraints) Performing minimization step: 193. Total energy = 34806.4791 kcal/mol (34783.7455 without restraints) Performing minimization step: 194. Total energy = 34703.1452 kcal/mol (34680.5477 without restraints) Performing minimization step: 195. Total energy = 34600.9556 kcal/mol (34578.4920 without restraints) Performing minimization step: 196. Total energy = 34499.8910 kcal/mol (34477.5593 without restraints) Performing minimization step: 197. Total energy = 34399.9346 kcal/mol (34377.7325 without restraints) Performing minimization step: 198. Total energy = 34301.0675 kcal/mol (34278.9929 without restraints) Performing minimization step: 199. Total energy = 34203.2718 kcal/mol (34181.3226 without restraints) Performing minimization step: 200. Total energy = 34106.5304 kcal/mol (34084.7045 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 34010.8256 kcal/mol (33989.1212 without restraints) Performing minimization step: 202. Total energy = 33916.1409 kcal/mol (33894.5559 without restraints) Performing minimization step: 203. Total energy = 33822.4598 kcal/mol (33800.9922 without restraints) Performing minimization step: 204. Total energy = 33729.7663 kcal/mol (33708.4143 without restraints) Performing minimization step: 205. Total energy = 33638.0443 kcal/mol (33616.8060 without restraints) Performing minimization step: 206. Total energy = 33547.2778 kcal/mol (33526.1514 without restraints) Performing minimization step: 207. Total energy = 33457.4515 kcal/mol (33436.4352 without restraints) Performing minimization step: 208. Total energy = 33368.5505 kcal/mol (33347.6425 without restraints) Performing minimization step: 209. Total energy = 33280.5600 kcal/mol (33259.7586 without restraints) Performing minimization step: 210. Total energy = 33193.4650 kcal/mol (33172.7684 without restraints) Performing minimization step: 211. Total energy = 33107.2509 kcal/mol (33086.6575 without restraints) Performing minimization step: 212. Total energy = 33021.9049 kcal/mol (33001.4130 without restraints) Performing minimization step: 213. Total energy = 32937.4128 kcal/mol (32917.0207 without restraints) Performing minimization step: 214. Total energy = 32853.7596 kcal/mol (32833.4660 without restraints) Performing minimization step: 215. Total energy = 32770.9331 kcal/mol (32750.7362 without restraints) Performing minimization step: 216. Total energy = 32688.9200 kcal/mol (32668.8183 without restraints) Performing minimization step: 217. Total energy = 32607.7076 kcal/mol (32587.6996 without restraints) Performing minimization step: 218. Total energy = 32527.2827 kcal/mol (32507.3669 without restraints) Performing minimization step: 219. Total energy = 32447.6334 kcal/mol (32427.8084 without restraints) Performing minimization step: 220. Total energy = 32368.7471 kcal/mol (32349.0113 without restraints) Performing minimization step: 221. Total energy = 32290.6117 kcal/mol (32270.9639 without restraints) Performing minimization step: 222. Total energy = 32213.2155 kcal/mol (32193.6544 without restraints) Performing minimization step: 223. Total energy = 32136.5467 kcal/mol (32117.0706 without restraints) Performing minimization step: 224. Total energy = 32060.5947 kcal/mol (32041.2025 without restraints) Performing minimization step: 225. Total energy = 31985.3475 kcal/mol (31966.0379 without restraints) Performing minimization step: 226. Total energy = 31910.7943 kcal/mol (31891.5660 without restraints) Performing minimization step: 227. Total energy = 31836.9243 kcal/mol (31817.7760 without restraints) Performing minimization step: 228. Total energy = 31763.7273 kcal/mol (31744.6578 without restraints) Performing minimization step: 229. Total energy = 31691.1922 kcal/mol (31672.2001 without restraints) Performing minimization step: 230. Total energy = 31619.3088 kcal/mol (31600.3930 without restraints) Performing minimization step: 231. Total energy = 31548.0672 kcal/mol (31529.2266 without restraints) Performing minimization step: 232. Total energy = 31477.4574 kcal/mol (31458.6908 without restraints) Performing minimization step: 233. Total energy = 31407.4698 kcal/mol (31388.7760 without restraints) Performing minimization step: 234. Total energy = 31338.0947 kcal/mol (31319.4726 without restraints) Performing minimization step: 235. Total energy = 31269.3223 kcal/mol (31250.7709 without restraints) Performing minimization step: 236. Total energy = 31201.1439 kcal/mol (31182.6620 without restraints) Performing minimization step: 237. Total energy = 31133.5507 kcal/mol (31115.1372 without restraints) Performing minimization step: 238. Total energy = 31066.5343 kcal/mol (31048.1883 without restraints) Performing minimization step: 239. Total energy = 31000.0841 kcal/mol (30981.8045 without restraints) Performing minimization step: 240. Total energy = 30934.1927 kcal/mol (30915.9786 without restraints) Performing minimization step: 241. Total energy = 30868.8510 kcal/mol (30850.7012 without restraints) Performing minimization step: 242. Total energy = 30804.0510 kcal/mol (30785.9646 without restraints) Performing minimization step: 243. Total energy = 30739.7844 kcal/mol (30721.7607 without restraints) Performing minimization step: 244. Total energy = 30676.0435 kcal/mol (30658.0811 without restraints) Performing minimization step: 245. Total energy = 30612.8196 kcal/mol (30594.9178 without restraints) Performing minimization step: 246. Total energy = 30550.1057 kcal/mol (30532.2636 without restraints) Performing minimization step: 247. Total energy = 30487.8942 kcal/mol (30470.1109 without restraints) Performing minimization step: 248. Total energy = 30426.1778 kcal/mol (30408.4524 without restraints) Performing minimization step: 249. Total energy = 30364.9482 kcal/mol (30347.2799 without restraints) Performing minimization step: 250. Total energy = 30304.1988 kcal/mol (30286.5869 without restraints) Performing minimization step: 251. Total energy = 30243.9224 kcal/mol (30226.3656 without restraints) Performing minimization step: 252. Total energy = 30184.1113 kcal/mol (30166.6092 without restraints) Performing minimization step: 253. Total energy = 30124.7600 kcal/mol (30107.3116 without restraints) Performing minimization step: 254. Total energy = 30065.8604 kcal/mol (30048.4651 without restraints) Performing minimization step: 255. Total energy = 30007.4068 kcal/mol (29990.0637 without restraints) Performing minimization step: 256. Total energy = 29949.3924 kcal/mol (29932.1006 without restraints) Performing minimization step: 257. Total energy = 29891.8106 kcal/mol (29874.5696 without restraints) Performing minimization step: 258. Total energy = 29834.6554 kcal/mol (29817.4643 without restraints) Performing minimization step: 259. Total energy = 29777.9203 kcal/mol (29760.7785 without restraints) Performing minimization step: 260. Total energy = 29721.5991 kcal/mol (29704.5057 without restraints) Performing minimization step: 261. Total energy = 29665.6864 kcal/mol (29648.6408 without restraints) Performing minimization step: 262. Total energy = 29610.1758 kcal/mol (29593.1771 without restraints) Performing minimization step: 263. Total energy = 29555.0617 kcal/mol (29538.1097 without restraints) Performing minimization step: 264. Total energy = 29500.3389 kcal/mol (29483.4326 without restraints) Performing minimization step: 265. Total energy = 29446.0010 kcal/mol (29429.1399 without restraints) Performing minimization step: 266. Total energy = 29392.0429 kcal/mol (29375.2263 without restraints) Performing minimization step: 267. Total energy = 29338.4589 kcal/mol (29321.6862 without restraints) Performing minimization step: 268. Total energy = 29285.2438 kcal/mol (29268.5142 without restraints) Performing minimization step: 269. Total energy = 29232.3928 kcal/mol (29215.7059 without restraints) Performing minimization step: 270. Total energy = 29179.9006 kcal/mol (29163.2557 without restraints) Performing minimization step: 271. Total energy = 29127.7623 kcal/mol (29111.1589 without restraints) Performing minimization step: 272. Total energy = 29075.9727 kcal/mol (29059.4101 without restraints) Performing minimization step: 273. Total energy = 29024.5270 kcal/mol (29008.0047 without restraints) Performing minimization step: 274. Total energy = 28973.4204 kcal/mol (28956.9378 without restraints) Performing minimization step: 275. Total energy = 28922.6483 kcal/mol (28906.2050 without restraints) Performing minimization step: 276. Total energy = 28872.2062 kcal/mol (28855.8015 without restraints) Performing minimization step: 277. Total energy = 28822.0899 kcal/mol (28805.7233 without restraints) Performing minimization step: 278. Total energy = 28772.2932 kcal/mol (28755.9640 without restraints) Performing minimization step: 279. Total energy = 28722.8132 kcal/mol (28706.5212 without restraints) Performing minimization step: 280. Total energy = 28673.6455 kcal/mol (28657.3901 without restraints) Performing minimization step: 281. Total energy = 28624.7856 kcal/mol (28608.5663 without restraints) Performing minimization step: 282. Total energy = 28576.2294 kcal/mol (28560.0457 without restraints) Performing minimization step: 283. Total energy = 28527.9730 kcal/mol (28511.8244 without restraints) Performing minimization step: 284. Total energy = 28480.0123 kcal/mol (28463.8983 without restraints) Performing minimization step: 285. Total energy = 28432.3430 kcal/mol (28416.2632 without restraints) Performing minimization step: 286. Total energy = 28384.9617 kcal/mol (28368.9157 without restraints) Performing minimization step: 287. Total energy = 28337.8646 kcal/mol (28321.8519 without restraints) Performing minimization step: 288. Total energy = 28291.0471 kcal/mol (28275.0672 without restraints) Performing minimization step: 289. Total energy = 28244.5067 kcal/mol (28228.5591 without restraints) Performing minimization step: 290. Total energy = 28198.2388 kcal/mol (28182.3232 without restraints) Performing minimization step: 291. Total energy = 28152.2404 kcal/mol (28136.3564 without restraints) Performing minimization step: 292. Total energy = 28106.5076 kcal/mol (28090.6547 without restraints) Performing minimization step: 293. Total energy = 28061.0373 kcal/mol (28045.2152 without restraints) Performing minimization step: 294. Total energy = 28015.8259 kcal/mol (28000.0341 without restraints) Performing minimization step: 295. Total energy = 27970.8700 kcal/mol (27955.1083 without restraints) Performing minimization step: 296. Total energy = 27926.1667 kcal/mol (27910.4345 without restraints) Performing minimization step: 297. Total energy = 27881.7123 kcal/mol (27866.0094 without restraints) Performing minimization step: 298. Total energy = 27837.5039 kcal/mol (27821.8296 without restraints) Performing minimization step: 299. Total energy = 27793.5384 kcal/mol (27777.8927 without restraints) Performing minimization step: 300. Total energy = 27749.8128 kcal/mol (27734.1952 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 27706.3237 kcal/mol (27690.7339 without restraints) Performing minimization step: 302. Total energy = 27663.0687 kcal/mol (27647.5063 without restraints) Performing minimization step: 303. Total energy = 27620.0447 kcal/mol (27604.5094 without restraints) Performing minimization step: 304. Total energy = 27577.2489 kcal/mol (27561.7404 without restraints) Performing minimization step: 305. Total energy = 27534.6779 kcal/mol (27519.1957 without restraints) Performing minimization step: 306. Total energy = 27492.3296 kcal/mol (27476.8735 without restraints) Performing minimization step: 307. Total energy = 27450.2012 kcal/mol (27434.7710 without restraints) Performing minimization step: 308. Total energy = 27408.2900 kcal/mol (27392.8852 without restraints) Performing minimization step: 309. Total energy = 27366.5929 kcal/mol (27351.2133 without restraints) Performing minimization step: 310. Total energy = 27325.1081 kcal/mol (27309.7533 without restraints) Performing minimization step: 311. Total energy = 27283.8324 kcal/mol (27268.5022 without restraints) Performing minimization step: 312. Total energy = 27242.7643 kcal/mol (27227.4584 without restraints) Performing minimization step: 313. Total energy = 27201.9001 kcal/mol (27186.6181 without restraints) Performing minimization step: 314. Total energy = 27161.2380 kcal/mol (27145.9798 without restraints) Performing minimization step: 315. Total energy = 27120.7760 kcal/mol (27105.5413 without restraints) Performing minimization step: 316. Total energy = 27080.5115 kcal/mol (27065.2998 without restraints) Performing minimization step: 317. Total energy = 27040.4415 kcal/mol (27025.2529 without restraints) Performing minimization step: 318. Total energy = 27000.5641 kcal/mol (26985.3978 without restraints) Performing minimization step: 319. Total energy = 26960.8774 kcal/mol (26945.7335 without restraints) Performing minimization step: 320. Total energy = 26921.3784 kcal/mol (26906.2567 without restraints) Performing minimization step: 321. Total energy = 26882.0661 kcal/mol (26866.9663 without restraints) Performing minimization step: 322. Total energy = 26842.9376 kcal/mol (26827.8592 without restraints) Performing minimization step: 323. Total energy = 26803.9914 kcal/mol (26788.9343 without restraints) Performing minimization step: 324. Total energy = 26765.2248 kcal/mol (26750.1890 without restraints) Performing minimization step: 325. Total energy = 26726.6362 kcal/mol (26711.6212 without restraints) Performing minimization step: 326. Total energy = 26688.2235 kcal/mol (26673.2292 without restraints) Performing minimization step: 327. Total energy = 26649.9849 kcal/mol (26635.0111 without restraints) Performing minimization step: 328. Total energy = 26611.9186 kcal/mol (26596.9649 without restraints) Performing minimization step: 329. Total energy = 26574.0219 kcal/mol (26559.0882 without restraints) Performing minimization step: 330. Total energy = 26536.2941 kcal/mol (26521.3802 without restraints) Performing minimization step: 331. Total energy = 26498.7326 kcal/mol (26483.8382 without restraints) Performing minimization step: 332. Total energy = 26461.3358 kcal/mol (26446.4608 without restraints) Performing minimization step: 333. Total energy = 26424.1022 kcal/mol (26409.2462 without restraints) Performing minimization step: 334. Total energy = 26387.0295 kcal/mol (26372.1925 without restraints) Performing minimization step: 335. Total energy = 26350.1155 kcal/mol (26335.2972 without restraints) Performing minimization step: 336. Total energy = 26313.3594 kcal/mol (26298.5598 without restraints) Performing minimization step: 337. Total energy = 26276.7600 kcal/mol (26261.9785 without restraints) Performing minimization step: 338. Total energy = 26240.3153 kcal/mol (26225.5520 without restraints) Performing minimization step: 339. Total energy = 26204.0242 kcal/mol (26189.2792 without restraints) Performing minimization step: 340. Total energy = 26167.8843 kcal/mol (26153.1570 without restraints) Performing minimization step: 341. Total energy = 26131.8948 kcal/mol (26117.1849 without restraints) Performing minimization step: 342. Total energy = 26096.0527 kcal/mol (26081.3603 without restraints) Performing minimization step: 343. Total energy = 26060.3574 kcal/mol (26045.6822 without restraints) Performing minimization step: 344. Total energy = 26024.8074 kcal/mol (26010.1493 without restraints) Performing minimization step: 345. Total energy = 25989.4011 kcal/mol (25974.7599 without restraints) Performing minimization step: 346. Total energy = 25954.1375 kcal/mol (25939.5131 without restraints) Performing minimization step: 347. Total energy = 25919.0147 kcal/mol (25904.4068 without restraints) Performing minimization step: 348. Total energy = 25884.0312 kcal/mol (25869.4398 without restraints) Performing minimization step: 349. Total energy = 25849.1864 kcal/mol (25834.6112 without restraints) Performing minimization step: 350. Total energy = 25814.4785 kcal/mol (25799.9193 without restraints) Performing minimization step: 351. Total energy = 25779.9056 kcal/mol (25765.3624 without restraints) Performing minimization step: 352. Total energy = 25745.4675 kcal/mol (25730.9401 without restraints) Performing minimization step: 353. Total energy = 25711.1624 kcal/mol (25696.6507 without restraints) Performing minimization step: 354. Total energy = 25676.9887 kcal/mol (25662.4925 without restraints) Performing minimization step: 355. Total energy = 25642.9463 kcal/mol (25628.4654 without restraints) Performing minimization step: 356. Total energy = 25609.0329 kcal/mol (25594.5671 without restraints) Performing minimization step: 357. Total energy = 25575.2468 kcal/mol (25560.7962 without restraints) Performing minimization step: 358. Total energy = 25541.5883 kcal/mol (25527.1525 without restraints) Performing minimization step: 359. Total energy = 25508.0554 kcal/mol (25493.6344 without restraints) Performing minimization step: 360. Total energy = 25474.6470 kcal/mol (25460.2406 without restraints) Performing minimization step: 361. Total energy = 25441.3620 kcal/mol (25426.9703 without restraints) Performing minimization step: 362. Total energy = 25408.1994 kcal/mol (25393.8221 without restraints) Performing minimization step: 363. Total energy = 25375.1581 kcal/mol (25360.7950 without restraints) Performing minimization step: 364. Total energy = 25342.2365 kcal/mol (25327.8875 without restraints) Performing minimization step: 365. Total energy = 25309.4342 kcal/mol (25295.0993 without restraints) Performing minimization step: 366. Total energy = 25276.7501 kcal/mol (25262.4290 without restraints) Performing minimization step: 367. Total energy = 25244.1828 kcal/mol (25229.8756 without restraints) Performing minimization step: 368. Total energy = 25211.7317 kcal/mol (25197.4382 without restraints) Performing minimization step: 369. Total energy = 25179.3953 kcal/mol (25165.1152 without restraints) Performing minimization step: 370. Total energy = 25147.1730 kcal/mol (25132.9063 without restraints) Performing minimization step: 371. Total energy = 25115.0636 kcal/mol (25100.8102 without restraints) Performing minimization step: 372. Total energy = 25083.0661 kcal/mol (25068.8259 without restraints) Performing minimization step: 373. Total energy = 25051.1795 kcal/mol (25036.9524 without restraints) Performing minimization step: 374. Total energy = 25019.4033 kcal/mol (25005.1893 without restraints) Performing minimization step: 375. Total energy = 24987.7364 kcal/mol (24973.5352 without restraints) Performing minimization step: 376. Total energy = 24956.1775 kcal/mol (24941.9889 without restraints) Performing minimization step: 377. Total energy = 24924.7264 kcal/mol (24910.5506 without restraints) Performing minimization step: 378. Total energy = 24893.3813 kcal/mol (24879.2181 without restraints) Performing minimization step: 379. Total energy = 24862.1425 kcal/mol (24847.9918 without restraints) Performing minimization step: 380. Total energy = 24831.0085 kcal/mol (24816.8701 without restraints) Performing minimization step: 381. Total energy = 24799.9784 kcal/mol (24785.8523 without restraints) Performing minimization step: 382. Total energy = 24769.0514 kcal/mol (24754.9374 without restraints) Performing minimization step: 383. Total energy = 24738.2273 kcal/mol (24724.1258 without restraints) Performing minimization step: 384. Total energy = 24707.5047 kcal/mol (24693.4147 without restraints) Performing minimization step: 385. Total energy = 24676.8821 kcal/mol (24662.8040 without restraints) Performing minimization step: 386. Total energy = 24646.3600 kcal/mol (24632.2938 without restraints) Performing minimization step: 387. Total energy = 24615.9366 kcal/mol (24601.8820 without restraints) Performing minimization step: 388. Total energy = 24585.6120 kcal/mol (24571.5691 without restraints) Performing minimization step: 389. Total energy = 24555.3848 kcal/mol (24541.3534 without restraints) Performing minimization step: 390. Total energy = 24525.2551 kcal/mol (24511.2353 without restraints) Performing minimization step: 391. Total energy = 24495.2217 kcal/mol (24481.2131 without restraints) Performing minimization step: 392. Total energy = 24465.2830 kcal/mol (24451.2857 without restraints) Performing minimization step: 393. Total energy = 24435.4393 kcal/mol (24421.4531 without restraints) Performing minimization step: 394. Total energy = 24405.6899 kcal/mol (24391.7149 without restraints) Performing minimization step: 395. Total energy = 24376.0337 kcal/mol (24362.0698 without restraints) Performing minimization step: 396. Total energy = 24346.4704 kcal/mol (24332.5174 without restraints) Performing minimization step: 397. Total energy = 24316.9989 kcal/mol (24303.0568 without restraints) Performing minimization step: 398. Total energy = 24287.6185 kcal/mol (24273.6870 without restraints) Performing minimization step: 399. Total energy = 24258.3289 kcal/mol (24244.4082 without restraints) Performing minimization step: 400. Total energy = 24229.1293 kcal/mol (24215.2193 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 24200.0195 kcal/mol (24186.1201 without restraints) Performing minimization step: 402. Total energy = 24170.9984 kcal/mol (24157.1096 without restraints) Performing minimization step: 403. Total energy = 24142.0658 kcal/mol (24128.1874 without restraints) Performing minimization step: 404. Total energy = 24113.2204 kcal/mol (24099.3521 without restraints) Performing minimization step: 405. Total energy = 24084.4618 kcal/mol (24070.6040 without restraints) Performing minimization step: 406. Total energy = 24055.7899 kcal/mol (24041.9423 without restraints) Performing minimization step: 407. Total energy = 24027.2034 kcal/mol (24013.3659 without restraints) Performing minimization step: 408. Total energy = 23998.7026 kcal/mol (23984.8752 without restraints) Performing minimization step: 409. Total energy = 23970.2862 kcal/mol (23956.4689 without restraints) Performing minimization step: 410. Total energy = 23941.9537 kcal/mol (23928.1464 without restraints) Performing minimization step: 411. Total energy = 23913.7049 kcal/mol (23899.9074 without restraints) Performing minimization step: 412. Total energy = 23885.5389 kcal/mol (23871.7510 without restraints) Performing minimization step: 413. Total energy = 23857.4552 kcal/mol (23843.6771 without restraints) Performing minimization step: 414. Total energy = 23829.4537 kcal/mol (23815.6856 without restraints) Performing minimization step: 415. Total energy = 23801.5337 kcal/mol (23787.7752 without restraints) Performing minimization step: 416. Total energy = 23773.6942 kcal/mol (23759.9453 without restraints) Performing minimization step: 417. Total energy = 23745.9353 kcal/mol (23732.1960 without restraints) Performing minimization step: 418. Total energy = 23718.2564 kcal/mol (23704.5263 without restraints) Performing minimization step: 419. Total energy = 23690.6565 kcal/mol (23676.9358 without restraints) Performing minimization step: 420. Total energy = 23663.1352 kcal/mol (23649.4241 without restraints) Performing minimization step: 421. Total energy = 23635.6933 kcal/mol (23621.9914 without restraints) Performing minimization step: 422. Total energy = 23608.3291 kcal/mol (23594.6364 without restraints) Performing minimization step: 423. Total energy = 23581.0422 kcal/mol (23567.3587 without restraints) Performing minimization step: 424. Total energy = 23553.8318 kcal/mol (23540.1575 without restraints) Performing minimization step: 425. Total energy = 23526.6978 kcal/mol (23513.0323 without restraints) Performing minimization step: 426. Total energy = 23499.6398 kcal/mol (23485.9836 without restraints) Performing minimization step: 427. Total energy = 23472.6567 kcal/mol (23459.0093 without restraints) Performing minimization step: 428. Total energy = 23445.7495 kcal/mol (23432.1111 without restraints) Performing minimization step: 429. Total energy = 23418.9164 kcal/mol (23405.2868 without restraints) Performing minimization step: 430. Total energy = 23392.1577 kcal/mol (23378.5369 without restraints) Performing minimization step: 431. Total energy = 23365.4727 kcal/mol (23351.8606 without restraints) Performing minimization step: 432. Total energy = 23338.8609 kcal/mol (23325.2577 without restraints) Performing minimization step: 433. Total energy = 23312.3225 kcal/mol (23298.7280 without restraints) Performing minimization step: 434. Total energy = 23285.8562 kcal/mol (23272.2702 without restraints) Performing minimization step: 435. Total energy = 23259.4621 kcal/mol (23245.8848 without restraints) Performing minimization step: 436. Total energy = 23233.1397 kcal/mol (23219.5710 without restraints) Performing minimization step: 437. Total energy = 23206.8887 kcal/mol (23193.3284 without restraints) Performing minimization step: 438. Total energy = 23180.7090 kcal/mol (23167.1572 without restraints) Performing minimization step: 439. Total energy = 23154.5999 kcal/mol (23141.0565 without restraints) Performing minimization step: 440. Total energy = 23128.5608 kcal/mol (23115.0259 without restraints) Performing minimization step: 441. Total energy = 23102.5914 kcal/mol (23089.0646 without restraints) Performing minimization step: 442. Total energy = 23076.6908 kcal/mol (23063.1724 without restraints) Performing minimization step: 443. Total energy = 23050.8592 kcal/mol (23037.3488 without restraints) Performing minimization step: 444. Total energy = 23025.0968 kcal/mol (23011.5947 without restraints) Performing minimization step: 445. Total energy = 22999.4021 kcal/mol (22985.9081 without restraints) Performing minimization step: 446. Total energy = 22973.7754 kcal/mol (22960.2895 without restraints) Performing minimization step: 447. Total energy = 22948.2168 kcal/mol (22934.7390 without restraints) Performing minimization step: 448. Total energy = 22922.7253 kcal/mol (22909.2554 without restraints) Performing minimization step: 449. Total energy = 22897.3005 kcal/mol (22883.8387 without restraints) Performing minimization step: 450. Total energy = 22871.9416 kcal/mol (22858.4877 without restraints) Performing minimization step: 451. Total energy = 22846.6489 kcal/mol (22833.2030 without restraints) Performing minimization step: 452. Total energy = 22821.4222 kcal/mol (22807.9840 without restraints) Performing minimization step: 453. Total energy = 22796.2610 kcal/mol (22782.8306 without restraints) Performing minimization step: 454. Total energy = 22771.1644 kcal/mol (22757.7418 without restraints) Performing minimization step: 455. Total energy = 22746.1327 kcal/mol (22732.7179 without restraints) Performing minimization step: 456. Total energy = 22721.1656 kcal/mol (22707.7585 without restraints) Performing minimization step: 457. Total energy = 22696.2625 kcal/mol (22682.8630 without restraints) Performing minimization step: 458. Total energy = 22671.4231 kcal/mol (22658.0312 without restraints) Performing minimization step: 459. Total energy = 22646.6476 kcal/mol (22633.2634 without restraints) Performing minimization step: 460. Total energy = 22621.9352 kcal/mol (22608.5586 without restraints) Performing minimization step: 461. Total energy = 22597.2855 kcal/mol (22583.9162 without restraints) Performing minimization step: 462. Total energy = 22572.6984 kcal/mol (22559.3369 without restraints) Performing minimization step: 463. Total energy = 22548.1738 kcal/mol (22534.8196 without restraints) Performing minimization step: 464. Total energy = 22523.7110 kcal/mol (22510.3642 without restraints) Performing minimization step: 465. Total energy = 22499.3101 kcal/mol (22485.9707 without restraints) Performing minimization step: 466. Total energy = 22474.9704 kcal/mol (22461.6383 without restraints) Performing minimization step: 467. Total energy = 22450.6917 kcal/mol (22437.3670 without restraints) Performing minimization step: 468. Total energy = 22426.4740 kcal/mol (22413.1566 without restraints) Performing minimization step: 469. Total energy = 22402.3166 kcal/mol (22389.0063 without restraints) Performing minimization step: 470. Total energy = 22378.2194 kcal/mol (22364.9164 without restraints) Performing minimization step: 471. Total energy = 22354.1813 kcal/mol (22340.8856 without restraints) Performing minimization step: 472. Total energy = 22330.2035 kcal/mol (22316.9148 without restraints) Performing minimization step: 473. Total energy = 22306.2853 kcal/mol (22293.0039 without restraints) Performing minimization step: 474. Total energy = 22282.4262 kcal/mol (22269.1518 without restraints) Performing minimization step: 475. Total energy = 22258.6265 kcal/mol (22245.3595 without restraints) Performing minimization step: 476. Total energy = 22234.8849 kcal/mol (22221.6247 without restraints) Performing minimization step: 477. Total energy = 22211.2018 kcal/mol (22197.9487 without restraints) Performing minimization step: 478. Total energy = 22187.5764 kcal/mol (22174.3303 without restraints) Performing minimization step: 479. Total energy = 22164.0091 kcal/mol (22150.7699 without restraints) Performing minimization step: 480. Total energy = 22140.4995 kcal/mol (22127.2673 without restraints) Performing minimization step: 481. Total energy = 22117.0472 kcal/mol (22103.8217 without restraints) Performing minimization step: 482. Total energy = 22093.6516 kcal/mol (22080.4331 without restraints) Performing minimization step: 483. Total energy = 22070.3134 kcal/mol (22057.1016 without restraints) Performing minimization step: 484. Total energy = 22047.0319 kcal/mol (22033.8270 without restraints) Performing minimization step: 485. Total energy = 22023.8064 kcal/mol (22010.6082 without restraints) Performing minimization step: 486. Total energy = 22000.6370 kcal/mol (21987.4458 without restraints) Performing minimization step: 487. Total energy = 21977.5229 kcal/mol (21964.3384 without restraints) Performing minimization step: 488. Total energy = 21954.4650 kcal/mol (21941.2872 without restraints) Performing minimization step: 489. Total energy = 21931.4624 kcal/mol (21918.2912 without restraints) Performing minimization step: 490. Total energy = 21908.5153 kcal/mol (21895.3508 without restraints) Performing minimization step: 491. Total energy = 21885.6230 kcal/mol (21872.4653 without restraints) Performing minimization step: 492. Total energy = 21862.7858 kcal/mol (21849.6346 without restraints) Performing minimization step: 493. Total energy = 21840.0023 kcal/mol (21826.8577 without restraints) Performing minimization step: 494. Total energy = 21817.2734 kcal/mol (21804.1354 without restraints) Performing minimization step: 495. Total energy = 21794.5983 kcal/mol (21781.4667 without restraints) Performing minimization step: 496. Total energy = 21771.9770 kcal/mol (21758.8519 without restraints) Performing minimization step: 497. Total energy = 21749.4095 kcal/mol (21736.2910 without restraints) Performing minimization step: 498. Total energy = 21726.8951 kcal/mol (21713.7829 without restraints) Performing minimization step: 499. Total energy = 21704.4338 kcal/mol (21691.3282 without restraints) Performing minimization step: 500. Total energy = 21682.0259 kcal/mol (21668.9269 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 21659.6709 kcal/mol (21646.5781 without restraints) Performing minimization step: 502. Total energy = 21637.3680 kcal/mol (21624.2816 without restraints) Performing minimization step: 503. Total energy = 21615.1172 kcal/mol (21602.0371 without restraints) Performing minimization step: 504. Total energy = 21592.9188 kcal/mol (21579.8449 without restraints) Performing minimization step: 505. Total energy = 21570.7721 kcal/mol (21557.7046 without restraints) Performing minimization step: 506. Total energy = 21548.6772 kcal/mol (21535.6160 without restraints) Performing minimization step: 507. Total energy = 21526.6338 kcal/mol (21513.5788 without restraints) Performing minimization step: 508. Total energy = 21504.6417 kcal/mol (21491.5929 without restraints) Performing minimization step: 509. Total energy = 21482.7007 kcal/mol (21469.6584 without restraints) Performing minimization step: 510. Total energy = 21460.8108 kcal/mol (21447.7744 without restraints) Performing minimization step: 511. Total energy = 21438.9711 kcal/mol (21425.9410 without restraints) Performing minimization step: 512. Total energy = 21417.1824 kcal/mol (21404.1584 without restraints) Performing minimization step: 513. Total energy = 21395.4432 kcal/mol (21382.4253 without restraints) Performing minimization step: 514. Total energy = 21373.7548 kcal/mol (21360.7430 without restraints) Performing minimization step: 515. Total energy = 21352.1158 kcal/mol (21339.1102 without restraints) Performing minimization step: 516. Total energy = 21330.5270 kcal/mol (21317.5274 without restraints) Performing minimization step: 517. Total energy = 21308.9878 kcal/mol (21295.9942 without restraints) Performing minimization step: 518. Total energy = 21287.4978 kcal/mol (21274.5102 without restraints) Performing minimization step: 519. Total energy = 21266.0572 kcal/mol (21253.0754 without restraints) Performing minimization step: 520. Total energy = 21244.6651 kcal/mol (21231.6895 without restraints) Performing minimization step: 521. Total energy = 21223.3220 kcal/mol (21210.3524 without restraints) Performing minimization step: 522. Total energy = 21202.0280 kcal/mol (21189.0645 without restraints) Performing minimization step: 523. Total energy = 21180.7820 kcal/mol (21167.8242 without restraints) Performing minimization step: 524. Total energy = 21159.5845 kcal/mol (21146.6326 without restraints) Performing minimization step: 525. Total energy = 21138.4352 kcal/mol (21125.4893 without restraints) Performing minimization step: 526. Total energy = 21117.3342 kcal/mol (21104.3942 without restraints) Performing minimization step: 527. Total energy = 21096.2810 kcal/mol (21083.3468 without restraints) Performing minimization step: 528. Total energy = 21075.2753 kcal/mol (21062.3468 without restraints) Performing minimization step: 529. Total energy = 21054.3166 kcal/mol (21041.3940 without restraints) Performing minimization step: 530. Total energy = 21033.4055 kcal/mol (21020.4887 without restraints) Performing minimization step: 531. Total energy = 21012.5410 kcal/mol (20999.6300 without restraints) Performing minimization step: 532. Total energy = 20991.7240 kcal/mol (20978.8187 without restraints) Performing minimization step: 533. Total energy = 20970.9532 kcal/mol (20958.0538 without restraints) Performing minimization step: 534. Total energy = 20950.2292 kcal/mol (20937.3355 without restraints) Performing minimization step: 535. Total energy = 20929.5520 kcal/mol (20916.6639 without restraints) Performing minimization step: 536. Total energy = 20908.9210 kcal/mol (20896.0386 without restraints) Performing minimization step: 537. Total energy = 20888.3361 kcal/mol (20875.4594 without restraints) Performing minimization step: 538. Total energy = 20867.7972 kcal/mol (20854.9262 without restraints) Performing minimization step: 539. Total energy = 20847.3041 kcal/mol (20834.4387 without restraints) Performing minimization step: 540. Total energy = 20826.8566 kcal/mol (20813.9970 without restraints) Performing minimization step: 541. Total energy = 20806.4549 kcal/mol (20793.6009 without restraints) Performing minimization step: 542. Total energy = 20786.0988 kcal/mol (20773.2502 without restraints) Performing minimization step: 543. Total energy = 20765.7874 kcal/mol (20752.9443 without restraints) Performing minimization step: 544. Total energy = 20745.5211 kcal/mol (20732.6836 without restraints) Performing minimization step: 545. Total energy = 20725.2995 kcal/mol (20712.4677 without restraints) Performing minimization step: 546. Total energy = 20705.1223 kcal/mol (20692.2959 without restraints) Performing minimization step: 547. Total energy = 20684.9898 kcal/mol (20672.1689 without restraints) Performing minimization step: 548. Total energy = 20664.9019 kcal/mol (20652.0867 without restraints) Performing minimization step: 549. Total energy = 20644.8588 kcal/mol (20632.0489 without restraints) Performing minimization step: 550. Total energy = 20624.8593 kcal/mol (20612.0549 without restraints) Performing minimization step: 551. Total energy = 20604.9038 kcal/mol (20592.1048 without restraints) Performing minimization step: 552. Total energy = 20584.9921 kcal/mol (20572.1985 without restraints) Performing minimization step: 553. Total energy = 20565.1241 kcal/mol (20552.3359 without restraints) Performing minimization step: 554. Total energy = 20545.2991 kcal/mol (20532.5164 without restraints) Performing minimization step: 555. Total energy = 20525.5180 kcal/mol (20512.7406 without restraints) Performing minimization step: 556. Total energy = 20505.7801 kcal/mol (20493.0081 without restraints) Performing minimization step: 557. Total energy = 20486.0859 kcal/mol (20473.3193 without restraints) Performing minimization step: 558. Total energy = 20466.4337 kcal/mol (20453.6724 without restraints) Performing minimization step: 559. Total energy = 20446.8250 kcal/mol (20434.0691 without restraints) Performing minimization step: 560. Total energy = 20427.2588 kcal/mol (20414.5081 without restraints) Performing minimization step: 561. Total energy = 20407.7351 kcal/mol (20394.9897 without restraints) Performing minimization step: 562. Total energy = 20388.2539 kcal/mol (20375.5138 without restraints) Performing minimization step: 563. Total energy = 20368.8157 kcal/mol (20356.0809 without restraints) Performing minimization step: 564. Total energy = 20349.4187 kcal/mol (20336.6891 without restraints) Performing minimization step: 565. Total energy = 20330.0635 kcal/mol (20317.3392 without restraints) Performing minimization step: 566. Total energy = 20310.7496 kcal/mol (20298.0305 without restraints) Performing minimization step: 567. Total energy = 20291.4784 kcal/mol (20278.7645 without restraints) Performing minimization step: 568. Total energy = 20272.2487 kcal/mol (20259.5400 without restraints) Performing minimization step: 569. Total energy = 20253.0609 kcal/mol (20240.3573 without restraints) Performing minimization step: 570. Total energy = 20233.9140 kcal/mol (20221.2157 without restraints) Performing minimization step: 571. Total energy = 20214.8078 kcal/mol (20202.1145 without restraints) Performing minimization step: 572. Total energy = 20195.7428 kcal/mol (20183.0547 without restraints) Performing minimization step: 573. Total energy = 20176.7190 kcal/mol (20164.0358 without restraints) Performing minimization step: 574. Total energy = 20157.7355 kcal/mol (20145.0576 without restraints) Performing minimization step: 575. Total energy = 20138.7933 kcal/mol (20126.1207 without restraints) Performing minimization step: 576. Total energy = 20119.8917 kcal/mol (20107.2242 without restraints) Performing minimization step: 577. Total energy = 20101.0307 kcal/mol (20088.3681 without restraints) Performing minimization step: 578. Total energy = 20082.2092 kcal/mol (20069.5515 without restraints) Performing minimization step: 579. Total energy = 20063.4282 kcal/mol (20050.7757 without restraints) Performing minimization step: 580. Total energy = 20044.6884 kcal/mol (20032.0410 without restraints) Performing minimization step: 581. Total energy = 20025.9875 kcal/mol (20013.3453 without restraints) Performing minimization step: 582. Total energy = 20007.3259 kcal/mol (19994.6884 without restraints) Performing minimization step: 583. Total energy = 19988.7045 kcal/mol (19976.0721 without restraints) Performing minimization step: 584. Total energy = 19970.1228 kcal/mol (19957.4954 without restraints) Performing minimization step: 585. Total energy = 19951.5803 kcal/mol (19938.9578 without restraints) Performing minimization step: 586. Total energy = 19933.0768 kcal/mol (19920.4593 without restraints) Performing minimization step: 587. Total energy = 19914.6125 kcal/mol (19901.9999 without restraints) Performing minimization step: 588. Total energy = 19896.1872 kcal/mol (19883.5796 without restraints) Performing minimization step: 589. Total energy = 19877.8013 kcal/mol (19865.1986 without restraints) Performing minimization step: 590. Total energy = 19859.4541 kcal/mol (19846.8563 without restraints) Performing minimization step: 591. Total energy = 19841.1456 kcal/mol (19828.5527 without restraints) Performing minimization step: 592. Total energy = 19822.8759 kcal/mol (19810.2879 without restraints) Performing minimization step: 593. Total energy = 19804.6444 kcal/mol (19792.0613 without restraints) Performing minimization step: 594. Total energy = 19786.4511 kcal/mol (19773.8730 without restraints) Performing minimization step: 595. Total energy = 19768.2959 kcal/mol (19755.7225 without restraints) Performing minimization step: 596. Total energy = 19750.1789 kcal/mol (19737.6104 without restraints) Performing minimization step: 597. Total energy = 19732.1000 kcal/mol (19719.5362 without restraints) Performing minimization step: 598. Total energy = 19714.0586 kcal/mol (19701.4997 without restraints) Performing minimization step: 599. Total energy = 19696.0553 kcal/mol (19683.5012 without restraints) Performing minimization step: 600. Total energy = 19678.0900 kcal/mol (19665.5406 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 19660.1618 kcal/mol (19647.6173 without restraints) Performing minimization step: 602. Total energy = 19642.2710 kcal/mol (19629.7312 without restraints) Performing minimization step: 603. Total energy = 19624.4174 kcal/mol (19611.8823 without restraints) Performing minimization step: 604. Total energy = 19606.6011 kcal/mol (19594.0709 without restraints) Performing minimization step: 605. Total energy = 19588.8221 kcal/mol (19576.2966 without restraints) Performing minimization step: 606. Total energy = 19571.0796 kcal/mol (19558.5586 without restraints) Performing minimization step: 607. Total energy = 19553.3740 kcal/mol (19540.8579 without restraints) Performing minimization step: 608. Total energy = 19535.7048 kcal/mol (19523.1934 without restraints) Performing minimization step: 609. Total energy = 19518.0727 kcal/mol (19505.5660 without restraints) Performing minimization step: 610. Total energy = 19500.4770 kcal/mol (19487.9750 without restraints) Performing minimization step: 611. Total energy = 19482.9178 kcal/mol (19470.4205 without restraints) Performing minimization step: 612. Total energy = 19465.3950 kcal/mol (19452.9024 without restraints) Performing minimization step: 613. Total energy = 19447.9084 kcal/mol (19435.4202 without restraints) Performing minimization step: 614. Total energy = 19430.4577 kcal/mol (19417.9742 without restraints) Performing minimization step: 615. Total energy = 19413.0432 kcal/mol (19400.5645 without restraints) Performing minimization step: 616. Total energy = 19395.6649 kcal/mol (19383.1908 without restraints) Performing minimization step: 617. Total energy = 19378.3222 kcal/mol (19365.8526 without restraints) Performing minimization step: 618. Total energy = 19361.0153 kcal/mol (19348.5503 without restraints) Performing minimization step: 619. Total energy = 19343.7437 kcal/mol (19331.2833 without restraints) Performing minimization step: 620. Total energy = 19326.5075 kcal/mol (19314.0517 without restraints) Performing minimization step: 621. Total energy = 19309.3061 kcal/mol (19296.8549 without restraints) Performing minimization step: 622. Total energy = 19292.1404 kcal/mol (19279.6936 without restraints) Performing minimization step: 623. Total energy = 19275.0100 kcal/mol (19262.5682 without restraints) Performing minimization step: 624. Total energy = 19257.9146 kcal/mol (19245.4770 without restraints) Performing minimization step: 625. Total energy = 19240.8540 kcal/mol (19228.4210 without restraints) Performing minimization step: 626. Total energy = 19223.8284 kcal/mol (19211.3998 without restraints) Performing minimization step: 627. Total energy = 19206.8374 kcal/mol (19194.4134 without restraints) Performing minimization step: 628. Total energy = 19189.8808 kcal/mol (19177.4612 without restraints) Performing minimization step: 629. Total energy = 19172.9593 kcal/mol (19160.5442 without restraints) Performing minimization step: 630. Total energy = 19156.0718 kcal/mol (19143.6612 without restraints) Performing minimization step: 631. Total energy = 19139.2184 kcal/mol (19126.8123 without restraints) Performing minimization step: 632. Total energy = 19122.3995 kcal/mol (19109.9978 without restraints) Performing minimization step: 633. Total energy = 19105.6147 kcal/mol (19093.2174 without restraints) Performing minimization step: 634. Total energy = 19088.8638 kcal/mol (19076.4709 without restraints) Performing minimization step: 635. Total energy = 19072.1466 kcal/mol (19059.7582 without restraints) Performing minimization step: 636. Total energy = 19055.4635 kcal/mol (19043.0795 without restraints) Performing minimization step: 637. Total energy = 19038.8141 kcal/mol (19026.4345 without restraints) Performing minimization step: 638. Total energy = 19022.1982 kcal/mol (19009.8231 without restraints) Performing minimization step: 639. Total energy = 19005.6159 kcal/mol (18993.2451 without restraints) Performing minimization step: 640. Total energy = 18989.0672 kcal/mol (18976.7008 without restraints) Performing minimization step: 641. Total energy = 18972.5515 kcal/mol (18960.1894 without restraints) Performing minimization step: 642. Total energy = 18956.0691 kcal/mol (18943.7114 without restraints) Performing minimization step: 643. Total energy = 18939.6202 kcal/mol (18927.2669 without restraints) Performing minimization step: 644. Total energy = 18923.2040 kcal/mol (18910.8551 without restraints) Performing minimization step: 645. Total energy = 18906.8207 kcal/mol (18894.4761 without restraints) Performing minimization step: 646. Total energy = 18890.4703 kcal/mol (18878.1300 without restraints) Performing minimization step: 647. Total energy = 18874.1526 kcal/mol (18861.8166 without restraints) Performing minimization step: 648. Total energy = 18857.8677 kcal/mol (18845.5360 without restraints) Performing minimization step: 649. Total energy = 18841.6151 kcal/mol (18829.2877 without restraints) Performing minimization step: 650. Total energy = 18825.3947 kcal/mol (18813.0715 without restraints) Performing minimization step: 651. Total energy = 18809.2071 kcal/mol (18796.8884 without restraints) Performing minimization step: 652. Total energy = 18793.0517 kcal/mol (18780.7371 without restraints) Performing minimization step: 653. Total energy = 18776.9285 kcal/mol (18764.6181 without restraints) Performing minimization step: 654. Total energy = 18760.8373 kcal/mol (18748.5312 without restraints) Performing minimization step: 655. Total energy = 18744.7779 kcal/mol (18732.4761 without restraints) Performing minimization step: 656. Total energy = 18728.7511 kcal/mol (18716.4534 without restraints) Performing minimization step: 657. Total energy = 18712.7554 kcal/mol (18700.4620 without restraints) Performing minimization step: 658. Total energy = 18696.7914 kcal/mol (18684.5023 without restraints) Performing minimization step: 659. Total energy = 18680.8592 kcal/mol (18668.5743 without restraints) Performing minimization step: 660. Total energy = 18664.9585 kcal/mol (18652.6778 without restraints) Performing minimization step: 661. Total energy = 18649.0895 kcal/mol (18636.8129 without restraints) Performing minimization step: 662. Total energy = 18633.2513 kcal/mol (18620.9788 without restraints) Performing minimization step: 663. Total energy = 18617.4446 kcal/mol (18605.1763 without restraints) Performing minimization step: 664. Total energy = 18601.6691 kcal/mol (18589.4051 without restraints) Performing minimization step: 665. Total energy = 18585.9246 kcal/mol (18573.6646 without restraints) Performing minimization step: 666. Total energy = 18570.2110 kcal/mol (18557.9553 without restraints) Performing minimization step: 667. Total energy = 18554.5282 kcal/mol (18542.2766 without restraints) Performing minimization step: 668. Total energy = 18538.8756 kcal/mol (18526.6281 without restraints) Performing minimization step: 669. Total energy = 18523.2545 kcal/mol (18511.0113 without restraints) Performing minimization step: 670. Total energy = 18507.6642 kcal/mol (18495.4249 without restraints) Performing minimization step: 671. Total energy = 18492.1040 kcal/mol (18479.8688 without restraints) Performing minimization step: 672. Total energy = 18476.5744 kcal/mol (18464.3433 without restraints) Performing minimization step: 673. Total energy = 18461.0755 kcal/mol (18448.8486 without restraints) Performing minimization step: 674. Total energy = 18445.6066 kcal/mol (18433.3837 without restraints) Performing minimization step: 675. Total energy = 18430.1680 kcal/mol (18417.9492 without restraints) Performing minimization step: 676. Total energy = 18414.7595 kcal/mol (18402.5448 without restraints) Performing minimization step: 677. Total energy = 18399.3808 kcal/mol (18387.1700 without restraints) Performing minimization step: 678. Total energy = 18384.0317 kcal/mol (18371.8251 without restraints) Performing minimization step: 679. Total energy = 18368.7127 kcal/mol (18356.5101 without restraints) Performing minimization step: 680. Total energy = 18353.4231 kcal/mol (18341.2244 without restraints) Performing minimization step: 681. Total energy = 18338.1633 kcal/mol (18325.9688 without restraints) Performing minimization step: 682. Total energy = 18322.9338 kcal/mol (18310.7434 without restraints) Performing minimization step: 683. Total energy = 18307.7334 kcal/mol (18295.5469 without restraints) Performing minimization step: 684. Total energy = 18292.5622 kcal/mol (18280.3797 without restraints) Performing minimization step: 685. Total energy = 18277.4207 kcal/mol (18265.2422 without restraints) Performing minimization step: 686. Total energy = 18262.3079 kcal/mol (18250.1334 without restraints) Performing minimization step: 687. Total energy = 18247.2246 kcal/mol (18235.0540 without restraints) Performing minimization step: 688. Total energy = 18232.1703 kcal/mol (18220.0037 without restraints) Performing minimization step: 689. Total energy = 18217.1444 kcal/mol (18204.9818 without restraints) Performing minimization step: 690. Total energy = 18202.1474 kcal/mol (18189.9888 without restraints) Performing minimization step: 691. Total energy = 18187.1798 kcal/mol (18175.0252 without restraints) Performing minimization step: 692. Total energy = 18172.2402 kcal/mol (18160.0894 without restraints) Performing minimization step: 693. Total energy = 18157.3305 kcal/mol (18145.1837 without restraints) Performing minimization step: 694. Total energy = 18142.4486 kcal/mol (18130.3057 without restraints) Performing minimization step: 695. Total energy = 18127.5955 kcal/mol (18115.4565 without restraints) Performing minimization step: 696. Total energy = 18112.7705 kcal/mol (18100.6354 without restraints) Performing minimization step: 697. Total energy = 18097.9735 kcal/mol (18085.8425 without restraints) Performing minimization step: 698. Total energy = 18083.2049 kcal/mol (18071.0777 without restraints) Performing minimization step: 699. Total energy = 18068.4647 kcal/mol (18056.3413 without restraints) Performing minimization step: 700. Total energy = 18053.7524 kcal/mol (18041.6331 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 18039.0682 kcal/mol (18026.9526 without restraints) Performing minimization step: 702. Total energy = 18024.4118 kcal/mol (18012.3000 without restraints) Performing minimization step: 703. Total energy = 18009.7832 kcal/mol (17997.6753 without restraints) Performing minimization step: 704. Total energy = 17995.1825 kcal/mol (17983.0787 without restraints) Performing minimization step: 705. Total energy = 17980.6095 kcal/mol (17968.5093 without restraints) Performing minimization step: 706. Total energy = 17966.0638 kcal/mol (17953.9675 without restraints) Performing minimization step: 707. Total energy = 17951.5458 kcal/mol (17939.4534 without restraints) Performing minimization step: 708. Total energy = 17937.0551 kcal/mol (17924.9664 without restraints) Performing minimization step: 709. Total energy = 17922.5919 kcal/mol (17910.5073 without restraints) Performing minimization step: 710. Total energy = 17908.1557 kcal/mol (17896.0747 without restraints) Performing minimization step: 711. Total energy = 17893.7471 kcal/mol (17881.6699 without restraints) Performing minimization step: 712. Total energy = 17879.3652 kcal/mol (17867.2917 without restraints) Performing minimization step: 713. Total energy = 17865.0102 kcal/mol (17852.9406 without restraints) Performing minimization step: 714. Total energy = 17850.6823 kcal/mol (17838.6165 without restraints) Performing minimization step: 715. Total energy = 17836.3810 kcal/mol (17824.3188 without restraints) Performing minimization step: 716. Total energy = 17822.1069 kcal/mol (17810.0487 without restraints) Performing minimization step: 717. Total energy = 17807.8597 kcal/mol (17795.8052 without restraints) Performing minimization step: 718. Total energy = 17793.6390 kcal/mol (17781.5882 without restraints) Performing minimization step: 719. Total energy = 17779.4446 kcal/mol (17767.3974 without restraints) Performing minimization step: 720. Total energy = 17765.2767 kcal/mol (17753.2335 without restraints) Performing minimization step: 721. Total energy = 17751.1352 kcal/mol (17739.0956 without restraints) Performing minimization step: 722. Total energy = 17737.0203 kcal/mol (17724.9845 without restraints) Performing minimization step: 723. Total energy = 17722.9319 kcal/mol (17710.8999 without restraints) Performing minimization step: 724. Total energy = 17708.8692 kcal/mol (17696.8408 without restraints) Performing minimization step: 725. Total energy = 17694.8327 kcal/mol (17682.8080 without restraints) Performing minimization step: 726. Total energy = 17680.8220 kcal/mol (17668.8011 without restraints) Performing minimization step: 727. Total energy = 17666.8369 kcal/mol (17654.8196 without restraints) Performing minimization step: 728. Total energy = 17652.8780 kcal/mol (17640.8644 without restraints) Performing minimization step: 729. Total energy = 17638.9451 kcal/mol (17626.9352 without restraints) Performing minimization step: 730. Total energy = 17625.0373 kcal/mol (17613.0309 without restraints) Performing minimization step: 731. Total energy = 17611.1554 kcal/mol (17599.1528 without restraints) Performing minimization step: 732. Total energy = 17597.2991 kcal/mol (17585.3002 without restraints) Performing minimization step: 733. Total energy = 17583.4688 kcal/mol (17571.4736 without restraints) Performing minimization step: 734. Total energy = 17569.6637 kcal/mol (17557.6722 without restraints) Performing minimization step: 735. Total energy = 17555.8836 kcal/mol (17543.8956 without restraints) Performing minimization step: 736. Total energy = 17542.1288 kcal/mol (17530.1444 without restraints) Performing minimization step: 737. Total energy = 17528.3987 kcal/mol (17516.4180 without restraints) Performing minimization step: 738. Total energy = 17514.6945 kcal/mol (17502.7174 without restraints) Performing minimization step: 739. Total energy = 17501.0155 kcal/mol (17489.0421 without restraints) Performing minimization step: 740. Total energy = 17487.3612 kcal/mol (17475.3915 without restraints) Performing minimization step: 741. Total energy = 17473.7316 kcal/mol (17461.7654 without restraints) Performing minimization step: 742. Total energy = 17460.1269 kcal/mol (17448.1643 without restraints) Performing minimization step: 743. Total energy = 17446.5471 kcal/mol (17434.5882 without restraints) Performing minimization step: 744. Total energy = 17432.9918 kcal/mol (17421.0363 without restraints) Performing minimization step: 745. Total energy = 17419.4610 kcal/mol (17407.5092 without restraints) Performing minimization step: 746. Total energy = 17405.9549 kcal/mol (17394.0067 without restraints) Performing minimization step: 747. Total energy = 17392.4732 kcal/mol (17380.5285 without restraints) Performing minimization step: 748. Total energy = 17379.0161 kcal/mol (17367.0751 without restraints) Performing minimization step: 749. Total energy = 17365.5838 kcal/mol (17353.6462 without restraints) Performing minimization step: 750. Total energy = 17352.1748 kcal/mol (17340.2408 without restraints) Performing minimization step: 751. Total energy = 17338.7900 kcal/mol (17326.8595 without restraints) Performing minimization step: 752. Total energy = 17325.4296 kcal/mol (17313.5025 without restraints) Performing minimization step: 753. Total energy = 17312.0929 kcal/mol (17300.1694 without restraints) Performing minimization step: 754. Total energy = 17298.7807 kcal/mol (17286.8608 without restraints) Performing minimization step: 755. Total energy = 17285.4924 kcal/mol (17273.5762 without restraints) Performing minimization step: 756. Total energy = 17272.2279 kcal/mol (17260.3150 without restraints) Performing minimization step: 757. Total energy = 17258.9868 kcal/mol (17247.0774 without restraints) Performing minimization step: 758. Total energy = 17245.7696 kcal/mol (17233.8638 without restraints) Performing minimization step: 759. Total energy = 17232.5760 kcal/mol (17220.6737 without restraints) Performing minimization step: 760. Total energy = 17219.4060 kcal/mol (17207.5072 without restraints) Performing minimization step: 761. Total energy = 17206.2594 kcal/mol (17194.3641 without restraints) Performing minimization step: 762. Total energy = 17193.1361 kcal/mol (17181.2443 without restraints) Performing minimization step: 763. Total energy = 17180.0362 kcal/mol (17168.1478 without restraints) Performing minimization step: 764. Total energy = 17166.9599 kcal/mol (17155.0750 without restraints) Performing minimization step: 765. Total energy = 17153.9064 kcal/mol (17142.0250 without restraints) Performing minimization step: 766. Total energy = 17140.8763 kcal/mol (17128.9983 without restraints) Performing minimization step: 767. Total energy = 17127.8692 kcal/mol (17115.9948 without restraints) Performing minimization step: 768. Total energy = 17114.8849 kcal/mol (17103.0137 without restraints) Performing minimization step: 769. Total energy = 17101.9237 kcal/mol (17090.0561 without restraints) Performing minimization step: 770. Total energy = 17088.9853 kcal/mol (17077.1211 without restraints) Performing minimization step: 771. Total energy = 17076.0698 kcal/mol (17064.2091 without restraints) Performing minimization step: 772. Total energy = 17063.1774 kcal/mol (17051.3201 without restraints) Performing minimization step: 773. Total energy = 17050.3071 kcal/mol (17038.4533 without restraints) Performing minimization step: 774. Total energy = 17037.4597 kcal/mol (17025.6093 without restraints) Performing minimization step: 775. Total energy = 17024.6346 kcal/mol (17012.7876 without restraints) Performing minimization step: 776. Total energy = 17011.8322 kcal/mol (16999.9888 without restraints) Performing minimization step: 777. Total energy = 16999.0529 kcal/mol (16987.2127 without restraints) Performing minimization step: 778. Total energy = 16986.2953 kcal/mol (16974.4585 without restraints) Performing minimization step: 779. Total energy = 16973.5601 kcal/mol (16961.7267 without restraints) Performing minimization step: 780. Total energy = 16960.8469 kcal/mol (16949.0169 without restraints) Performing minimization step: 781. Total energy = 16948.1559 kcal/mol (16936.3292 without restraints) Performing minimization step: 782. Total energy = 16935.4872 kcal/mol (16923.6639 without restraints) Performing minimization step: 783. Total energy = 16922.8408 kcal/mol (16911.0209 without restraints) Performing minimization step: 784. Total energy = 16910.2160 kcal/mol (16898.3995 without restraints) Performing minimization step: 785. Total energy = 16897.6131 kcal/mol (16885.7999 without restraints) Performing minimization step: 786. Total energy = 16885.0320 kcal/mol (16873.2222 without restraints) Performing minimization step: 787. Total energy = 16872.4725 kcal/mol (16860.6659 without restraints) Performing minimization step: 788. Total energy = 16859.9346 kcal/mol (16848.1315 without restraints) Performing minimization step: 789. Total energy = 16847.4184 kcal/mol (16835.6186 without restraints) Performing minimization step: 790. Total energy = 16834.9235 kcal/mol (16823.1270 without restraints) Performing minimization step: 791. Total energy = 16822.4504 kcal/mol (16810.6573 without restraints) Performing minimization step: 792. Total energy = 16809.9991 kcal/mol (16798.2093 without restraints) Performing minimization step: 793. Total energy = 16797.5686 kcal/mol (16785.7822 without restraints) Performing minimization step: 794. Total energy = 16785.1599 kcal/mol (16773.3766 without restraints) Performing minimization step: 795. Total energy = 16772.7725 kcal/mol (16760.9925 without restraints) Performing minimization step: 796. Total energy = 16760.4063 kcal/mol (16748.6298 without restraints) Performing minimization step: 797. Total energy = 16748.0614 kcal/mol (16736.2883 without restraints) Performing minimization step: 798. Total energy = 16735.7373 kcal/mol (16723.9673 without restraints) Performing minimization step: 799. Total energy = 16723.4343 kcal/mol (16711.6677 without restraints) Performing minimization step: 800. Total energy = 16711.1518 kcal/mol (16699.3885 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 16698.8905 kcal/mol (16687.1304 without restraints) Performing minimization step: 802. Total energy = 16686.6500 kcal/mol (16674.8932 without restraints) Performing minimization step: 803. Total energy = 16674.4296 kcal/mol (16662.6760 without restraints) Performing minimization step: 804. Total energy = 16662.2305 kcal/mol (16650.4803 without restraints) Performing minimization step: 805. Total energy = 16650.0523 kcal/mol (16638.3053 without restraints) Performing minimization step: 806. Total energy = 16637.8947 kcal/mol (16626.1511 without restraints) Performing minimization step: 807. Total energy = 16625.7575 kcal/mol (16614.0170 without restraints) Performing minimization step: 808. Total energy = 16613.6405 kcal/mol (16601.9032 without restraints) Performing minimization step: 809. Total energy = 16601.5441 kcal/mol (16589.8101 without restraints) Performing minimization step: 810. Total energy = 16589.4680 kcal/mol (16577.7372 without restraints) Performing minimization step: 811. Total energy = 16577.4124 kcal/mol (16565.6849 without restraints) Performing minimization step: 812. Total energy = 16565.3769 kcal/mol (16553.6526 without restraints) Performing minimization step: 813. Total energy = 16553.3617 kcal/mol (16541.6406 without restraints) Performing minimization step: 814. Total energy = 16541.3665 kcal/mol (16529.6487 without restraints) Performing minimization step: 815. Total energy = 16529.3919 kcal/mol (16517.6774 without restraints) Performing minimization step: 816. Total energy = 16517.4369 kcal/mol (16505.7255 without restraints) Performing minimization step: 817. Total energy = 16505.5016 kcal/mol (16493.7936 without restraints) Performing minimization step: 818. Total energy = 16493.5864 kcal/mol (16481.8814 without restraints) Performing minimization step: 819. Total energy = 16481.6907 kcal/mol (16469.9889 without restraints) Performing minimization step: 820. Total energy = 16469.8148 kcal/mol (16458.1163 without restraints) Performing minimization step: 821. Total energy = 16457.9588 kcal/mol (16446.2633 without restraints) Performing minimization step: 822. Total energy = 16446.1223 kcal/mol (16434.4301 without restraints) Performing minimization step: 823. Total energy = 16434.3056 kcal/mol (16422.6166 without restraints) Performing minimization step: 824. Total energy = 16422.5081 kcal/mol (16410.8222 without restraints) Performing minimization step: 825. Total energy = 16410.7306 kcal/mol (16399.0478 without restraints) Performing minimization step: 826. Total energy = 16398.9720 kcal/mol (16387.2925 without restraints) Performing minimization step: 827. Total energy = 16387.2333 kcal/mol (16375.5569 without restraints) Performing minimization step: 828. Total energy = 16375.5134 kcal/mol (16363.8402 without restraints) Performing minimization step: 829. Total energy = 16363.8128 kcal/mol (16352.1427 without restraints) Performing minimization step: 830. Total energy = 16352.1314 kcal/mol (16340.4645 without restraints) Performing minimization step: 831. Total energy = 16340.4690 kcal/mol (16328.8050 without restraints) Performing minimization step: 832. Total energy = 16328.8258 kcal/mol (16317.1653 without restraints) Performing minimization step: 833. Total energy = 16317.2020 kcal/mol (16305.5445 without restraints) Performing minimization step: 834. Total energy = 16305.5967 kcal/mol (16293.9423 without restraints) Performing minimization step: 835. Total energy = 16294.0102 kcal/mol (16282.3590 without restraints) Performing minimization step: 836. Total energy = 16282.4430 kcal/mol (16270.7949 without restraints) Performing minimization step: 837. Total energy = 16270.8944 kcal/mol (16259.2495 without restraints) Performing minimization step: 838. Total energy = 16259.3643 kcal/mol (16247.7222 without restraints) Performing minimization step: 839. Total energy = 16247.8531 kcal/mol (16236.2143 without restraints) Performing minimization step: 840. Total energy = 16236.3611 kcal/mol (16224.7256 without restraints) Performing minimization step: 841. Total energy = 16224.8875 kcal/mol (16213.2550 without restraints) Performing minimization step: 842. Total energy = 16213.4320 kcal/mol (16201.8026 without restraints) Performing minimization step: 843. Total energy = 16201.9952 kcal/mol (16190.3688 without restraints) Performing minimization step: 844. Total energy = 16190.5768 kcal/mol (16178.9536 without restraints) Performing minimization step: 845. Total energy = 16179.1767 kcal/mol (16167.5565 without restraints) Performing minimization step: 846. Total energy = 16167.7949 kcal/mol (16156.1779 without restraints) Performing minimization step: 847. Total energy = 16156.4316 kcal/mol (16144.8176 without restraints) Performing minimization step: 848. Total energy = 16145.0864 kcal/mol (16133.4756 without restraints) Performing minimization step: 849. Total energy = 16133.7595 kcal/mol (16122.1517 without restraints) Performing minimization step: 850. Total energy = 16122.4506 kcal/mol (16110.8459 without restraints) Performing minimization step: 851. Total energy = 16111.1598 kcal/mol (16099.5582 without restraints) Performing minimization step: 852. Total energy = 16099.8868 kcal/mol (16088.2882 without restraints) Performing minimization step: 853. Total energy = 16088.6317 kcal/mol (16077.0362 without restraints) Performing minimization step: 854. Total energy = 16077.3950 kcal/mol (16065.8026 without restraints) Performing minimization step: 855. Total energy = 16066.1755 kcal/mol (16054.5861 without restraints) Performing minimization step: 856. Total energy = 16054.9743 kcal/mol (16043.3879 without restraints) Performing minimization step: 857. Total energy = 16043.7908 kcal/mol (16032.2075 without restraints) Performing minimization step: 858. Total energy = 16032.6252 kcal/mol (16021.0448 without restraints) Performing minimization step: 859. Total energy = 16021.4770 kcal/mol (16009.8998 without restraints) Performing minimization step: 860. Total energy = 16010.3462 kcal/mol (15998.7719 without restraints) Performing minimization step: 861. Total energy = 15999.2337 kcal/mol (15987.6626 without restraints) Performing minimization step: 862. Total energy = 15988.1383 kcal/mol (15976.5704 without restraints) Performing minimization step: 863. Total energy = 15977.0603 kcal/mol (15965.4952 without restraints) Performing minimization step: 864. Total energy = 15965.9995 kcal/mol (15954.4374 without restraints) Performing minimization step: 865. Total energy = 15954.9562 kcal/mol (15943.3972 without restraints) Performing minimization step: 866. Total energy = 15943.9301 kcal/mol (15932.3741 without restraints) Performing minimization step: 867. Total energy = 15932.9215 kcal/mol (15921.3684 without restraints) Performing minimization step: 868. Total energy = 15921.9299 kcal/mol (15910.3798 without restraints) Performing minimization step: 869. Total energy = 15910.9554 kcal/mol (15899.4084 without restraints) Performing minimization step: 870. Total energy = 15899.9982 kcal/mol (15888.4542 without restraints) Performing minimization step: 871. Total energy = 15889.0578 kcal/mol (15877.5168 without restraints) Performing minimization step: 872. Total energy = 15878.1347 kcal/mol (15866.5966 without restraints) Performing minimization step: 873. Total energy = 15867.2286 kcal/mol (15855.6935 without restraints) Performing minimization step: 874. Total energy = 15856.3395 kcal/mol (15844.8074 without restraints) Performing minimization step: 875. Total energy = 15845.4671 kcal/mol (15833.9380 without restraints) Performing minimization step: 876. Total energy = 15834.6115 kcal/mol (15823.0854 without restraints) Performing minimization step: 877. Total energy = 15823.7727 kcal/mol (15812.2496 without restraints) Performing minimization step: 878. Total energy = 15812.9512 kcal/mol (15801.4311 without restraints) Performing minimization step: 879. Total energy = 15802.1461 kcal/mol (15790.6291 without restraints) Performing minimization step: 880. Total energy = 15791.3574 kcal/mol (15779.8432 without restraints) Performing minimization step: 881. Total energy = 15780.5854 kcal/mol (15769.0742 without restraints) Performing minimization step: 882. Total energy = 15769.8300 kcal/mol (15758.3217 without restraints) Performing minimization step: 883. Total energy = 15759.0909 kcal/mol (15747.5856 without restraints) Performing minimization step: 884. Total energy = 15748.3682 kcal/mol (15736.8659 without restraints) Performing minimization step: 885. Total energy = 15737.6626 kcal/mol (15726.1633 without restraints) Performing minimization step: 886. Total energy = 15726.9727 kcal/mol (15715.4763 without restraints) Performing minimization step: 887. Total energy = 15716.2990 kcal/mol (15704.8055 without restraints) Performing minimization step: 888. Total energy = 15705.6416 kcal/mol (15694.1511 without restraints) Performing minimization step: 889. Total energy = 15695.0004 kcal/mol (15683.5128 without restraints) Performing minimization step: 890. Total energy = 15684.3755 kcal/mol (15672.8910 without restraints) Performing minimization step: 891. Total energy = 15673.7668 kcal/mol (15662.2851 without restraints) Performing minimization step: 892. Total energy = 15663.1741 kcal/mol (15651.6953 without restraints) Performing minimization step: 893. Total energy = 15652.5965 kcal/mol (15641.1204 without restraints) Performing minimization step: 894. Total energy = 15642.0351 kcal/mol (15630.5621 without restraints) Performing minimization step: 895. Total energy = 15631.4905 kcal/mol (15620.0204 without restraints) Performing minimization step: 896. Total energy = 15620.9618 kcal/mol (15609.4946 without restraints) Performing minimization step: 897. Total energy = 15610.4487 kcal/mol (15598.9845 without restraints) Performing minimization step: 898. Total energy = 15599.9517 kcal/mol (15588.4904 without restraints) Performing minimization step: 899. Total energy = 15589.4699 kcal/mol (15578.0115 without restraints) Performing minimization step: 900. Total energy = 15579.0045 kcal/mol (15567.5490 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 15568.5540 kcal/mol (15557.1014 without restraints) Performing minimization step: 902. Total energy = 15558.1198 kcal/mol (15546.6701 without restraints) Performing minimization step: 903. Total energy = 15547.7010 kcal/mol (15536.2542 without restraints) Performing minimization step: 904. Total energy = 15537.2976 kcal/mol (15525.8537 without restraints) Performing minimization step: 905. Total energy = 15526.9098 kcal/mol (15515.4688 without restraints) Performing minimization step: 906. Total energy = 15516.5368 kcal/mol (15505.0987 without restraints) Performing minimization step: 907. Total energy = 15506.1799 kcal/mol (15494.7447 without restraints) Performing minimization step: 908. Total energy = 15495.8384 kcal/mol (15484.4061 without restraints) Performing minimization step: 909. Total energy = 15485.5123 kcal/mol (15474.0828 without restraints) Performing minimization step: 910. Total energy = 15475.2014 kcal/mol (15463.7749 without restraints) Performing minimization step: 911. Total energy = 15464.9059 kcal/mol (15453.4822 without restraints) Performing minimization step: 912. Total energy = 15454.6256 kcal/mol (15443.2049 without restraints) Performing minimization step: 913. Total energy = 15444.3604 kcal/mol (15432.9425 without restraints) Performing minimization step: 914. Total energy = 15434.1104 kcal/mol (15422.6953 without restraints) Performing minimization step: 915. Total energy = 15423.8754 kcal/mol (15412.4632 without restraints) Performing minimization step: 916. Total energy = 15413.6556 kcal/mol (15402.2462 without restraints) Performing minimization step: 917. Total energy = 15403.4506 kcal/mol (15392.0441 without restraints) Performing minimization step: 918. Total energy = 15393.2609 kcal/mol (15381.8572 without restraints) Performing minimization step: 919. Total energy = 15383.0858 kcal/mol (15371.6849 without restraints) Performing minimization step: 920. Total energy = 15372.9255 kcal/mol (15361.5276 without restraints) Performing minimization step: 921. Total energy = 15362.7800 kcal/mol (15351.3850 without restraints) Performing minimization step: 922. Total energy = 15352.6500 kcal/mol (15341.2577 without restraints) Performing minimization step: 923. Total energy = 15342.5347 kcal/mol (15331.1453 without restraints) Performing minimization step: 924. Total energy = 15332.4336 kcal/mol (15321.0471 without restraints) Performing minimization step: 925. Total energy = 15322.3473 kcal/mol (15310.9636 without restraints) Performing minimization step: 926. Total energy = 15312.2758 kcal/mol (15300.8949 without restraints) Performing minimization step: 927. Total energy = 15302.2188 kcal/mol (15290.8408 without restraints) Performing minimization step: 928. Total energy = 15292.1760 kcal/mol (15280.8009 without restraints) Performing minimization step: 929. Total energy = 15282.1475 kcal/mol (15270.7750 without restraints) Performing minimization step: 930. Total energy = 15272.1342 kcal/mol (15260.7648 without restraints) Performing minimization step: 931. Total energy = 15262.1354 kcal/mol (15250.7687 without restraints) Performing minimization step: 932. Total energy = 15252.1506 kcal/mol (15240.7867 without restraints) Performing minimization step: 933. Total energy = 15242.1803 kcal/mol (15230.8193 without restraints) Performing minimization step: 934. Total energy = 15232.2247 kcal/mol (15220.8666 without restraints) Performing minimization step: 935. Total energy = 15222.2836 kcal/mol (15210.9284 without restraints) Performing minimization step: 936. Total energy = 15212.3565 kcal/mol (15201.0038 without restraints) Performing minimization step: 937. Total energy = 15202.4437 kcal/mol (15191.0939 without restraints) Performing minimization step: 938. Total energy = 15192.5450 kcal/mol (15181.1982 without restraints) Performing minimization step: 939. Total energy = 15182.6604 kcal/mol (15171.3162 without restraints) Performing minimization step: 940. Total energy = 15172.7898 kcal/mol (15161.4484 without restraints) Performing minimization step: 941. Total energy = 15162.9334 kcal/mol (15151.5948 without restraints) Performing minimization step: 942. Total energy = 15153.0905 kcal/mol (15141.7547 without restraints) Performing minimization step: 943. Total energy = 15143.2621 kcal/mol (15131.9293 without restraints) Performing minimization step: 944. Total energy = 15133.4478 kcal/mol (15122.1177 without restraints) Performing minimization step: 945. Total energy = 15123.6472 kcal/mol (15112.3197 without restraints) Performing minimization step: 946. Total energy = 15113.8603 kcal/mol (15102.5357 without restraints) Performing minimization step: 947. Total energy = 15104.0875 kcal/mol (15092.7656 without restraints) Performing minimization step: 948. Total energy = 15094.3290 kcal/mol (15083.0100 without restraints) Performing minimization step: 949. Total energy = 15084.5836 kcal/mol (15073.2672 without restraints) Performing minimization step: 950. Total energy = 15074.8516 kcal/mol (15063.5381 without restraints) Performing minimization step: 951. Total energy = 15065.1337 kcal/mol (15053.8230 without restraints) Performing minimization step: 952. Total energy = 15055.4298 kcal/mol (15044.1220 without restraints) Performing minimization step: 953. Total energy = 15045.7392 kcal/mol (15034.4340 without restraints) Performing minimization step: 954. Total energy = 15036.0624 kcal/mol (15024.7600 without restraints) Performing minimization step: 955. Total energy = 15026.3994 kcal/mol (15015.0997 without restraints) Performing minimization step: 956. Total energy = 15016.7495 kcal/mol (15005.4527 without restraints) Performing minimization step: 957. Total energy = 15007.1134 kcal/mol (14995.8192 without restraints) Performing minimization step: 958. Total energy = 14997.4902 kcal/mol (14986.1989 without restraints) Performing minimization step: 959. Total energy = 14987.8808 kcal/mol (14976.5922 without restraints) Performing minimization step: 960. Total energy = 14978.2846 kcal/mol (14966.9988 without restraints) Performing minimization step: 961. Total energy = 14968.7017 kcal/mol (14957.4187 without restraints) Performing minimization step: 962. Total energy = 14959.1323 kcal/mol (14947.8518 without restraints) Performing minimization step: 963. Total energy = 14949.5758 kcal/mol (14938.2983 without restraints) Performing minimization step: 964. Total energy = 14940.0331 kcal/mol (14928.7583 without restraints) Performing minimization step: 965. Total energy = 14930.5035 kcal/mol (14919.2315 without restraints) Performing minimization step: 966. Total energy = 14920.9872 kcal/mol (14909.7179 without restraints) Performing minimization step: 967. Total energy = 14911.4838 kcal/mol (14900.2172 without restraints) Performing minimization step: 968. Total energy = 14901.9936 kcal/mol (14890.7298 without restraints) Performing minimization step: 969. Total energy = 14892.5163 kcal/mol (14881.2553 without restraints) Performing minimization step: 970. Total energy = 14883.0523 kcal/mol (14871.7938 without restraints) Performing minimization step: 971. Total energy = 14873.6010 kcal/mol (14862.3455 without restraints) Performing minimization step: 972. Total energy = 14864.1636 kcal/mol (14852.9107 without restraints) Performing minimization step: 973. Total energy = 14854.7387 kcal/mol (14843.4886 without restraints) Performing minimization step: 974. Total energy = 14845.3264 kcal/mol (14834.0789 without restraints) Performing minimization step: 975. Total energy = 14835.9268 kcal/mol (14824.6822 without restraints) Performing minimization step: 976. Total energy = 14826.5402 kcal/mol (14815.2982 without restraints) Performing minimization step: 977. Total energy = 14817.1664 kcal/mol (14805.9272 without restraints) Performing minimization step: 978. Total energy = 14807.8056 kcal/mol (14796.5691 without restraints) Performing minimization step: 979. Total energy = 14798.4571 kcal/mol (14787.2233 without restraints) Performing minimization step: 980. Total energy = 14789.1214 kcal/mol (14777.8903 without restraints) Performing minimization step: 981. Total energy = 14779.7990 kcal/mol (14768.5706 without restraints) Performing minimization step: 982. Total energy = 14770.4886 kcal/mol (14759.2630 without restraints) Performing minimization step: 983. Total energy = 14761.1911 kcal/mol (14749.9681 without restraints) Performing minimization step: 984. Total energy = 14751.9061 kcal/mol (14740.6859 without restraints) Performing minimization step: 985. Total energy = 14742.6338 kcal/mol (14731.4163 without restraints) Performing minimization step: 986. Total energy = 14733.3739 kcal/mol (14722.1591 without restraints) Performing minimization step: 987. Total energy = 14724.1265 kcal/mol (14712.9144 without restraints) Performing minimization step: 988. Total energy = 14714.8915 kcal/mol (14703.6821 without restraints) Performing minimization step: 989. Total energy = 14705.6690 kcal/mol (14694.4624 without restraints) Performing minimization step: 990. Total energy = 14696.4592 kcal/mol (14685.2553 without restraints) Performing minimization step: 991. Total energy = 14687.2616 kcal/mol (14676.0604 without restraints) Performing minimization step: 992. Total energy = 14678.0771 kcal/mol (14666.8787 without restraints) Performing minimization step: 993. Total energy = 14668.9043 kcal/mol (14657.7085 without restraints) Performing minimization step: 994. Total energy = 14659.7435 kcal/mol (14648.5504 without restraints) Performing minimization step: 995. Total energy = 14650.5954 kcal/mol (14639.4049 without restraints) Performing minimization step: 996. Total energy = 14641.4596 kcal/mol (14630.2721 without restraints) Performing minimization step: 997. Total energy = 14632.3365 kcal/mol (14621.1514 without restraints) Performing minimization step: 998. Total energy = 14623.2250 kcal/mol (14612.0426 without restraints) Performing minimization step: 999. Total energy = 14614.1252 kcal/mol (14602.9456 without restraints) Performing minimization step: 1000. Total energy = 14605.0378 kcal/mol (14593.8608 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 14595.9621 kcal/mol (14584.7878 without restraints) Performing minimization step: 1002. Total energy = 14586.8989 kcal/mol (14575.7273 without restraints) Performing minimization step: 1003. Total energy = 14577.8475 kcal/mol (14566.6786 without restraints) Performing minimization step: 1004. Total energy = 14568.8084 kcal/mol (14557.6421 without restraints) Performing minimization step: 1005. Total energy = 14559.7810 kcal/mol (14548.6174 without restraints) Performing minimization step: 1006. Total energy = 14550.7655 kcal/mol (14539.6046 without restraints) Performing minimization step: 1007. Total energy = 14541.7621 kcal/mol (14530.6038 without restraints) Performing minimization step: 1008. Total energy = 14532.7701 kcal/mol (14521.6146 without restraints) Performing minimization step: 1009. Total energy = 14523.7902 kcal/mol (14512.6373 without restraints) Performing minimization step: 1010. Total energy = 14514.8222 kcal/mol (14503.6720 without restraints) Performing minimization step: 1011. Total energy = 14505.8658 kcal/mol (14494.7182 without restraints) Performing minimization step: 1012. Total energy = 14496.9215 kcal/mol (14485.7767 without restraints) Performing minimization step: 1013. Total energy = 14487.9890 kcal/mol (14476.8468 without restraints) Performing minimization step: 1014. Total energy = 14479.0681 kcal/mol (14467.9286 without restraints) Performing minimization step: 1015. Total energy = 14470.1588 kcal/mol (14459.0219 without restraints) Performing minimization step: 1016. Total energy = 14461.2611 kcal/mol (14450.1269 without restraints) Performing minimization step: 1017. Total energy = 14452.3751 kcal/mol (14441.2436 without restraints) Performing minimization step: 1018. Total energy = 14443.5008 kcal/mol (14432.3719 without restraints) Performing minimization step: 1019. Total energy = 14434.6379 kcal/mol (14423.5116 without restraints) Performing minimization step: 1020. Total energy = 14425.7867 kcal/mol (14414.6631 without restraints) Performing minimization step: 1021. Total energy = 14416.9471 kcal/mol (14405.8262 without restraints) Performing minimization step: 1022. Total energy = 14408.1186 kcal/mol (14397.0003 without restraints) Performing minimization step: 1023. Total energy = 14399.3019 kcal/mol (14388.1863 without restraints) Performing minimization step: 1024. Total energy = 14390.4963 kcal/mol (14379.3834 without restraints) Performing minimization step: 1025. Total energy = 14381.7031 kcal/mol (14370.5928 without restraints) Performing minimization step: 1026. Total energy = 14372.9205 kcal/mol (14361.8129 without restraints) Performing minimization step: 1027. Total energy = 14364.1493 kcal/mol (14353.0443 without restraints) Performing minimization step: 1028. Total energy = 14355.3895 kcal/mol (14344.2871 without restraints) Performing minimization step: 1029. Total energy = 14346.6408 kcal/mol (14335.5410 without restraints) Performing minimization step: 1030. Total energy = 14337.9034 kcal/mol (14326.8063 without restraints) Performing minimization step: 1031. Total energy = 14329.1780 kcal/mol (14318.0837 without restraints) Performing minimization step: 1032. Total energy = 14320.4633 kcal/mol (14309.3715 without restraints) Performing minimization step: 1033. Total energy = 14311.7601 kcal/mol (14300.6710 without restraints) Performing minimization step: 1034. Total energy = 14303.0678 kcal/mol (14291.9814 without restraints) Performing minimization step: 1035. Total energy = 14294.3869 kcal/mol (14283.3031 without restraints) Performing minimization step: 1036. Total energy = 14285.7174 kcal/mol (14274.6360 without restraints) Performing minimization step: 1037. Total energy = 14277.0587 kcal/mol (14265.9801 without restraints) Performing minimization step: 1038. Total energy = 14268.4109 kcal/mol (14257.3349 without restraints) Performing minimization step: 1039. Total energy = 14259.7739 kcal/mol (14248.7006 without restraints) Performing minimization step: 1040. Total energy = 14251.1480 kcal/mol (14240.0773 without restraints) Performing minimization step: 1041. Total energy = 14242.5329 kcal/mol (14231.4648 without restraints) Performing minimization step: 1042. Total energy = 14233.9292 kcal/mol (14222.8639 without restraints) Performing minimization step: 1043. Total energy = 14225.3363 kcal/mol (14214.2734 without restraints) Performing minimization step: 1044. Total energy = 14216.7544 kcal/mol (14205.6942 without restraints) Performing minimization step: 1045. Total energy = 14208.1831 kcal/mol (14197.1255 without restraints) Performing minimization step: 1046. Total energy = 14199.6226 kcal/mol (14188.5676 without restraints) Performing minimization step: 1047. Total energy = 14191.0732 kcal/mol (14180.0209 without restraints) Performing minimization step: 1048. Total energy = 14182.5351 kcal/mol (14171.4853 without restraints) Performing minimization step: 1049. Total energy = 14174.0073 kcal/mol (14162.9603 without restraints) Performing minimization step: 1050. Total energy = 14165.4905 kcal/mol (14154.4460 without restraints) Performing minimization step: 1051. Total energy = 14156.9843 kcal/mol (14145.9426 without restraints) Performing minimization step: 1052. Total energy = 14148.4889 kcal/mol (14137.4497 without restraints) Performing minimization step: 1053. Total energy = 14140.0044 kcal/mol (14128.9678 without restraints) Performing minimization step: 1054. Total energy = 14131.5303 kcal/mol (14120.4963 without restraints) Performing minimization step: 1055. Total energy = 14123.0667 kcal/mol (14112.0352 without restraints) Performing minimization step: 1056. Total energy = 14114.6139 kcal/mol (14103.5850 without restraints) Performing minimization step: 1057. Total energy = 14106.1715 kcal/mol (14095.1452 without restraints) Performing minimization step: 1058. Total energy = 14097.7401 kcal/mol (14086.7165 without restraints) Performing minimization step: 1059. Total energy = 14089.3187 kcal/mol (14078.2977 without restraints) Performing minimization step: 1060. Total energy = 14080.9081 kcal/mol (14069.8897 without restraints) Performing minimization step: 1061. Total energy = 14072.5085 kcal/mol (14061.4930 without restraints) Performing minimization step: 1062. Total energy = 14064.1191 kcal/mol (14053.1059 without restraints) Performing minimization step: 1063. Total energy = 14055.7400 kcal/mol (14044.7296 without restraints) Performing minimization step: 1064. Total energy = 14047.3715 kcal/mol (14036.3636 without restraints) Performing minimization step: 1065. Total energy = 14039.0133 kcal/mol (14028.0081 without restraints) Performing minimization step: 1066. Total energy = 14030.6659 kcal/mol (14019.6629 without restraints) Performing minimization step: 1067. Total energy = 14022.3293 kcal/mol (14011.3292 without restraints) Performing minimization step: 1068. Total energy = 14014.0026 kcal/mol (14003.0051 without restraints) Performing minimization step: 1069. Total energy = 14005.6861 kcal/mol (13994.6912 without restraints) Performing minimization step: 1070. Total energy = 13997.3799 kcal/mol (13986.3875 without restraints) Performing minimization step: 1071. Total energy = 13989.0839 kcal/mol (13978.0941 without restraints) Performing minimization step: 1072. Total energy = 13980.7982 kcal/mol (13969.8112 without restraints) Performing minimization step: 1073. Total energy = 13972.5230 kcal/mol (13961.5384 without restraints) Performing minimization step: 1074. Total energy = 13964.2579 kcal/mol (13953.2759 without restraints) Performing minimization step: 1075. Total energy = 13956.0029 kcal/mol (13945.0235 without restraints) Performing minimization step: 1076. Total energy = 13947.7584 kcal/mol (13936.7817 without restraints) Performing minimization step: 1077. Total energy = 13939.5239 kcal/mol (13928.5497 without restraints) Performing minimization step: 1078. Total energy = 13931.2995 kcal/mol (13920.3279 without restraints) Performing minimization step: 1079. Total energy = 13923.0854 kcal/mol (13912.1164 without restraints) Performing minimization step: 1080. Total energy = 13914.8813 kcal/mol (13903.9148 without restraints) Performing minimization step: 1081. Total energy = 13906.6872 kcal/mol (13895.7234 without restraints) Performing minimization step: 1082. Total energy = 13898.5028 kcal/mol (13887.5416 without restraints) Performing minimization step: 1083. Total energy = 13890.3289 kcal/mol (13879.3702 without restraints) Performing minimization step: 1084. Total energy = 13882.1650 kcal/mol (13871.2090 without restraints) Performing minimization step: 1085. Total energy = 13874.0113 kcal/mol (13863.0578 without restraints) Performing minimization step: 1086. Total energy = 13865.8673 kcal/mol (13854.9164 without restraints) Performing minimization step: 1087. Total energy = 13857.7333 kcal/mol (13846.7850 without restraints) Performing minimization step: 1088. Total energy = 13849.6094 kcal/mol (13838.6637 without restraints) Performing minimization step: 1089. Total energy = 13841.4957 kcal/mol (13830.5525 without restraints) Performing minimization step: 1090. Total energy = 13833.3910 kcal/mol (13822.4504 without restraints) Performing minimization step: 1091. Total energy = 13825.2968 kcal/mol (13814.3588 without restraints) Performing minimization step: 1092. Total energy = 13817.2124 kcal/mol (13806.2771 without restraints) Performing minimization step: 1093. Total energy = 13809.1377 kcal/mol (13798.2049 without restraints) Performing minimization step: 1094. Total energy = 13801.0730 kcal/mol (13790.1427 without restraints) Performing minimization step: 1095. Total energy = 13793.0181 kcal/mol (13782.0904 without restraints) Performing minimization step: 1096. Total energy = 13784.9730 kcal/mol (13774.0479 without restraints) Performing minimization step: 1097. Total energy = 13776.9378 kcal/mol (13766.0152 without restraints) Performing minimization step: 1098. Total energy = 13768.9117 kcal/mol (13757.9917 without restraints) Performing minimization step: 1099. Total energy = 13760.8957 kcal/mol (13749.9783 without restraints) Performing minimization step: 1100. Total energy = 13752.8894 kcal/mol (13741.9746 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 13744.8928 kcal/mol (13733.9806 without restraints) Performing minimization step: 1102. Total energy = 13736.9063 kcal/mol (13725.9966 without restraints) Performing minimization step: 1103. Total energy = 13728.9290 kcal/mol (13718.0219 without restraints) Performing minimization step: 1104. Total energy = 13720.9614 kcal/mol (13710.0568 without restraints) Performing minimization step: 1105. Total energy = 13713.0033 kcal/mol (13702.1013 without restraints) Performing minimization step: 1106. Total energy = 13705.0548 kcal/mol (13694.1553 without restraints) Performing minimization step: 1107. Total energy = 13697.1158 kcal/mol (13686.2190 without restraints) Performing minimization step: 1108. Total energy = 13689.1862 kcal/mol (13678.2919 without restraints) Performing minimization step: 1109. Total energy = 13681.2663 kcal/mol (13670.3744 without restraints) Performing minimization step: 1110. Total energy = 13673.3557 kcal/mol (13662.4665 without restraints) Performing minimization step: 1111. Total energy = 13665.4551 kcal/mol (13654.5687 without restraints) Performing minimization step: 1112. Total energy = 13657.5632 kcal/mol (13646.6791 without restraints) Performing minimization step: 1113. Total energy = 13649.6813 kcal/mol (13638.7998 without restraints) Performing minimization step: 1114. Total energy = 13641.8088 kcal/mol (13630.9299 without restraints) Performing minimization step: 1115. Total energy = 13633.9458 kcal/mol (13623.0694 without restraints) Performing minimization step: 1116. Total energy = 13626.0921 kcal/mol (13615.2183 without restraints) Performing minimization step: 1117. Total energy = 13618.2474 kcal/mol (13607.3762 without restraints) Performing minimization step: 1118. Total energy = 13610.4128 kcal/mol (13599.5441 without restraints) Performing minimization step: 1119. Total energy = 13602.5873 kcal/mol (13591.7211 without restraints) Performing minimization step: 1120. Total energy = 13594.7708 kcal/mol (13583.9071 without restraints) Performing minimization step: 1121. Total energy = 13586.9639 kcal/mol (13576.1028 without restraints) Performing minimization step: 1122. Total energy = 13579.1662 kcal/mol (13568.3077 without restraints) Performing minimization step: 1123. Total energy = 13571.3776 kcal/mol (13560.5217 without restraints) Performing minimization step: 1124. Total energy = 13563.5984 kcal/mol (13552.7448 without restraints) Performing minimization step: 1125. Total energy = 13555.8280 kcal/mol (13544.9771 without restraints) Performing minimization step: 1126. Total energy = 13548.0671 kcal/mol (13537.2188 without restraints) Performing minimization step: 1127. Total energy = 13540.3159 kcal/mol (13529.4702 without restraints) Performing minimization step: 1128. Total energy = 13532.5736 kcal/mol (13521.7304 without restraints) Performing minimization step: 1129. Total energy = 13524.8405 kcal/mol (13513.9998 without restraints) Performing minimization step: 1130. Total energy = 13517.1165 kcal/mol (13506.2784 without restraints) Performing minimization step: 1131. Total energy = 13509.4016 kcal/mol (13498.5660 without restraints) Performing minimization step: 1132. Total energy = 13501.6956 kcal/mol (13490.8626 without restraints) Performing minimization step: 1133. Total energy = 13493.9989 kcal/mol (13483.1686 without restraints) Performing minimization step: 1134. Total energy = 13486.3116 kcal/mol (13475.4837 without restraints) Performing minimization step: 1135. Total energy = 13478.6329 kcal/mol (13467.8075 without restraints) Performing minimization step: 1136. Total energy = 13470.9637 kcal/mol (13460.1408 without restraints) Performing minimization step: 1137. Total energy = 13463.3036 kcal/mol (13452.4834 without restraints) Performing minimization step: 1138. Total energy = 13455.6523 kcal/mol (13444.8345 without restraints) Performing minimization step: 1139. Total energy = 13448.0093 kcal/mol (13437.1941 without restraints) Performing minimization step: 1140. Total energy = 13440.3758 kcal/mol (13429.5630 without restraints) Performing minimization step: 1141. Total energy = 13432.7513 kcal/mol (13421.9412 without restraints) Performing minimization step: 1142. Total energy = 13425.1358 kcal/mol (13414.3282 without restraints) Performing minimization step: 1143. Total energy = 13417.5294 kcal/mol (13406.7243 without restraints) Performing minimization step: 1144. Total energy = 13409.9320 kcal/mol (13399.1295 without restraints) Performing minimization step: 1145. Total energy = 13402.3433 kcal/mol (13391.5434 without restraints) Performing minimization step: 1146. Total energy = 13394.7633 kcal/mol (13383.9658 without restraints) Performing minimization step: 1147. Total energy = 13387.1925 kcal/mol (13376.3978 without restraints) Performing minimization step: 1148. Total energy = 13379.6305 kcal/mol (13368.8381 without restraints) Performing minimization step: 1149. Total energy = 13372.0772 kcal/mol (13361.2875 without restraints) Performing minimization step: 1150. Total energy = 13364.5329 kcal/mol (13353.7456 without restraints) Performing minimization step: 1151. Total energy = 13356.9972 kcal/mol (13346.2125 without restraints) Performing minimization step: 1152. Total energy = 13349.4703 kcal/mol (13338.6880 without restraints) Performing minimization step: 1153. Total energy = 13341.9523 kcal/mol (13331.1726 without restraints) Performing minimization step: 1154. Total energy = 13334.4429 kcal/mol (13323.6658 without restraints) Performing minimization step: 1155. Total energy = 13326.9422 kcal/mol (13316.1674 without restraints) Performing minimization step: 1156. Total energy = 13319.4502 kcal/mol (13308.6781 without restraints) Performing minimization step: 1157. Total energy = 13311.9670 kcal/mol (13301.1974 without restraints) Performing minimization step: 1158. Total energy = 13304.4925 kcal/mol (13293.7255 without restraints) Performing minimization step: 1159. Total energy = 13297.0263 kcal/mol (13286.2618 without restraints) Performing minimization step: 1160. Total energy = 13289.5696 kcal/mol (13278.8076 without restraints) Performing minimization step: 1161. Total energy = 13282.1209 kcal/mol (13271.3615 without restraints) Performing minimization step: 1162. Total energy = 13274.6811 kcal/mol (13263.9242 without restraints) Performing minimization step: 1163. Total energy = 13267.2497 kcal/mol (13256.4952 without restraints) Performing minimization step: 1164. Total energy = 13259.8270 kcal/mol (13249.0751 without restraints) Performing minimization step: 1165. Total energy = 13252.4128 kcal/mol (13241.6636 without restraints) Performing minimization step: 1166. Total energy = 13245.0072 kcal/mol (13234.2603 without restraints) Performing minimization step: 1167. Total energy = 13237.6103 kcal/mol (13226.8661 without restraints) Performing minimization step: 1168. Total energy = 13230.2217 kcal/mol (13219.4800 without restraints) Performing minimization step: 1169. Total energy = 13222.8419 kcal/mol (13212.1026 without restraints) Performing minimization step: 1170. Total energy = 13215.4706 kcal/mol (13204.7339 without restraints) Performing minimization step: 1171. Total energy = 13208.1074 kcal/mol (13197.3731 without restraints) Performing minimization step: 1172. Total energy = 13200.7531 kcal/mol (13190.0214 without restraints) Performing minimization step: 1173. Total energy = 13193.4069 kcal/mol (13182.6777 without restraints) Performing minimization step: 1174. Total energy = 13186.0697 kcal/mol (13175.3431 without restraints) Performing minimization step: 1175. Total energy = 13178.7407 kcal/mol (13168.0166 without restraints) Performing minimization step: 1176. Total energy = 13171.4200 kcal/mol (13160.6984 without restraints) Performing minimization step: 1177. Total energy = 13164.1079 kcal/mol (13153.3891 without restraints) Performing minimization step: 1178. Total energy = 13156.8043 kcal/mol (13146.0878 without restraints) Performing minimization step: 1179. Total energy = 13149.5084 kcal/mol (13138.7942 without restraints) Performing minimization step: 1180. Total energy = 13142.2211 kcal/mol (13131.5096 without restraints) Performing minimization step: 1181. Total energy = 13134.9421 kcal/mol (13124.2331 without restraints) Performing minimization step: 1182. Total energy = 13127.6718 kcal/mol (13116.9653 without restraints) Performing minimization step: 1183. Total energy = 13120.4096 kcal/mol (13109.7057 without restraints) Performing minimization step: 1184. Total energy = 13113.1558 kcal/mol (13102.4544 without restraints) Performing minimization step: 1185. Total energy = 13105.9104 kcal/mol (13095.2115 without restraints) Performing minimization step: 1186. Total energy = 13098.6729 kcal/mol (13087.9763 without restraints) Performing minimization step: 1187. Total energy = 13091.4438 kcal/mol (13080.7500 without restraints) Performing minimization step: 1188. Total energy = 13084.2236 kcal/mol (13073.5321 without restraints) Performing minimization step: 1189. Total energy = 13077.0116 kcal/mol (13066.3228 without restraints) Performing minimization step: 1190. Total energy = 13069.8074 kcal/mol (13059.1211 without restraints) Performing minimization step: 1191. Total energy = 13062.6110 kcal/mol (13051.9272 without restraints) Performing minimization step: 1192. Total energy = 13055.4230 kcal/mol (13044.7415 without restraints) Performing minimization step: 1193. Total energy = 13048.2437 kcal/mol (13037.5648 without restraints) Performing minimization step: 1194. Total energy = 13041.0722 kcal/mol (13030.3959 without restraints) Performing minimization step: 1195. Total energy = 13033.9085 kcal/mol (13023.2345 without restraints) Performing minimization step: 1196. Total energy = 13026.7535 kcal/mol (13016.0822 without restraints) Performing minimization step: 1197. Total energy = 13019.6064 kcal/mol (13008.9376 without restraints) Performing minimization step: 1198. Total energy = 13012.4675 kcal/mol (13001.8012 without restraints) Performing minimization step: 1199. Total energy = 13005.3366 kcal/mol (12994.6729 without restraints) Performing minimization step: 1200. Total energy = 12998.2139 kcal/mol (12987.5526 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 12991.0995 kcal/mol (12980.4407 without restraints) Performing minimization step: 1202. Total energy = 12983.9926 kcal/mol (12973.3364 without restraints) Performing minimization step: 1203. Total energy = 12976.8943 kcal/mol (12966.2405 without restraints) Performing minimization step: 1204. Total energy = 12969.8037 kcal/mol (12959.1525 without restraints) Performing minimization step: 1205. Total energy = 12962.7212 kcal/mol (12952.0725 without restraints) Performing minimization step: 1206. Total energy = 12955.6468 kcal/mol (12945.0006 without restraints) Performing minimization step: 1207. Total energy = 12948.5805 kcal/mol (12937.9368 without restraints) Performing minimization step: 1208. Total energy = 12941.5220 kcal/mol (12930.8808 without restraints) Performing minimization step: 1209. Total energy = 12934.4717 kcal/mol (12923.8329 without restraints) Performing minimization step: 1210. Total energy = 12927.4292 kcal/mol (12916.7932 without restraints) Performing minimization step: 1211. Total energy = 12920.3945 kcal/mol (12909.7608 without restraints) Performing minimization step: 1212. Total energy = 12913.3678 kcal/mol (12902.7366 without restraints) Performing minimization step: 1213. Total energy = 12906.3491 kcal/mol (12895.7204 without restraints) Performing minimization step: 1214. Total energy = 12899.3386 kcal/mol (12888.7124 without restraints) Performing minimization step: 1215. Total energy = 12892.3357 kcal/mol (12881.7120 without restraints) Performing minimization step: 1216. Total energy = 12885.3406 kcal/mol (12874.7194 without restraints) Performing minimization step: 1217. Total energy = 12878.3534 kcal/mol (12867.7347 without restraints) Performing minimization step: 1218. Total energy = 12871.3740 kcal/mol (12860.7578 without restraints) Performing minimization step: 1219. Total energy = 12864.4025 kcal/mol (12853.7888 without restraints) Performing minimization step: 1220. Total energy = 12857.4387 kcal/mol (12846.8275 without restraints) Performing minimization step: 1221. Total energy = 12850.4834 kcal/mol (12839.8747 without restraints) Performing minimization step: 1222. Total energy = 12843.5355 kcal/mol (12832.9293 without restraints) Performing minimization step: 1223. Total energy = 12836.5951 kcal/mol (12825.9914 without restraints) Performing minimization step: 1224. Total energy = 12829.6625 kcal/mol (12819.0613 without restraints) Performing minimization step: 1225. Total energy = 12822.7378 kcal/mol (12812.1391 without restraints) Performing minimization step: 1226. Total energy = 12815.8205 kcal/mol (12805.2243 without restraints) Performing minimization step: 1227. Total energy = 12808.9110 kcal/mol (12798.3172 without restraints) Performing minimization step: 1228. Total energy = 12802.0092 kcal/mol (12791.4180 without restraints) Performing minimization step: 1229. Total energy = 12795.1156 kcal/mol (12784.5269 without restraints) Performing minimization step: 1230. Total energy = 12788.2296 kcal/mol (12777.6434 without restraints) Performing minimization step: 1231. Total energy = 12781.3515 kcal/mol (12770.7677 without restraints) Performing minimization step: 1232. Total energy = 12774.4808 kcal/mol (12763.8996 without restraints) Performing minimization step: 1233. Total energy = 12767.6180 kcal/mol (12757.0393 without restraints) Performing minimization step: 1234. Total energy = 12760.7624 kcal/mol (12750.1862 without restraints) Performing minimization step: 1235. Total energy = 12753.9148 kcal/mol (12743.3410 without restraints) Performing minimization step: 1236. Total energy = 12747.0748 kcal/mol (12736.5035 without restraints) Performing minimization step: 1237. Total energy = 12740.2426 kcal/mol (12729.6737 without restraints) Performing minimization step: 1238. Total energy = 12733.4181 kcal/mol (12722.8521 without restraints) Performing minimization step: 1239. Total energy = 12726.6012 kcal/mol (12716.0374 without restraints) Performing minimization step: 1240. Total energy = 12719.7916 kcal/mol (12709.2303 without restraints) Performing minimization step: 1241. Total energy = 12712.9894 kcal/mol (12702.4306 without restraints) Performing minimization step: 1242. Total energy = 12706.1951 kcal/mol (12695.6388 without restraints) Performing minimization step: 1243. Total energy = 12699.4082 kcal/mol (12688.8542 without restraints) Performing minimization step: 1244. Total energy = 12692.6286 kcal/mol (12682.0774 without restraints) Performing minimization step: 1245. Total energy = 12685.8575 kcal/mol (12675.3087 without restraints) Performing minimization step: 1246. Total energy = 12679.0933 kcal/mol (12668.5470 without restraints) Performing minimization step: 1247. Total energy = 12672.3367 kcal/mol (12661.7928 without restraints) Performing minimization step: 1248. Total energy = 12665.5874 kcal/mol (12655.0461 without restraints) Performing minimization step: 1249. Total energy = 12658.8459 kcal/mol (12648.3071 without restraints) Performing minimization step: 1250. Total energy = 12652.1119 kcal/mol (12641.5755 without restraints) Performing minimization step: 1251. Total energy = 12645.3852 kcal/mol (12634.8514 without restraints) Performing minimization step: 1252. Total energy = 12638.6658 kcal/mol (12628.1342 without restraints) Performing minimization step: 1253. Total energy = 12631.9539 kcal/mol (12621.4251 without restraints) Performing minimization step: 1254. Total energy = 12625.2495 kcal/mol (12614.7231 without restraints) Performing minimization step: 1255. Total energy = 12618.5525 kcal/mol (12608.0286 without restraints) Performing minimization step: 1256. Total energy = 12611.8629 kcal/mol (12601.3415 without restraints) Performing minimization step: 1257. Total energy = 12605.1812 kcal/mol (12594.6622 without restraints) Performing minimization step: 1258. Total energy = 12598.5068 kcal/mol (12587.9904 without restraints) Performing minimization step: 1259. Total energy = 12591.8400 kcal/mol (12581.3261 without restraints) Performing minimization step: 1260. Total energy = 12585.1800 kcal/mol (12574.6685 without restraints) Performing minimization step: 1261. Total energy = 12578.5273 kcal/mol (12568.0183 without restraints) Performing minimization step: 1262. Total energy = 12571.8820 kcal/mol (12561.3755 without restraints) Performing minimization step: 1263. Total energy = 12565.2441 kcal/mol (12554.7400 without restraints) Performing minimization step: 1264. Total energy = 12558.6133 kcal/mol (12548.1116 without restraints) Performing minimization step: 1265. Total energy = 12551.9902 kcal/mol (12541.4914 without restraints) Performing minimization step: 1266. Total energy = 12545.3744 kcal/mol (12534.8778 without restraints) Performing minimization step: 1267. Total energy = 12538.7659 kcal/mol (12528.2718 without restraints) Performing minimization step: 1268. Total energy = 12532.1646 kcal/mol (12521.6729 without restraints) Performing minimization step: 1269. Total energy = 12525.5705 kcal/mol (12515.0813 without restraints) Performing minimization step: 1270. Total energy = 12518.9837 kcal/mol (12508.4971 without restraints) Performing minimization step: 1271. Total energy = 12512.4043 kcal/mol (12501.9201 without restraints) Performing minimization step: 1272. Total energy = 12505.8318 kcal/mol (12495.3500 without restraints) Performing minimization step: 1273. Total energy = 12499.2665 kcal/mol (12488.7872 without restraints) Performing minimization step: 1274. Total energy = 12492.7085 kcal/mol (12482.2318 without restraints) Performing minimization step: 1275. Total energy = 12486.1585 kcal/mol (12475.6842 without restraints) Performing minimization step: 1276. Total energy = 12479.6147 kcal/mol (12469.1430 without restraints) Performing minimization step: 1277. Total energy = 12473.0783 kcal/mol (12462.6089 without restraints) Performing minimization step: 1278. Total energy = 12466.5489 kcal/mol (12456.0820 without restraints) Performing minimization step: 1279. Total energy = 12460.0270 kcal/mol (12449.5626 without restraints) Performing minimization step: 1280. Total energy = 12453.5123 kcal/mol (12443.0506 without restraints) Performing minimization step: 1281. Total energy = 12447.0048 kcal/mol (12436.5454 without restraints) Performing minimization step: 1282. Total energy = 12440.5046 kcal/mol (12430.0477 without restraints) Performing minimization step: 1283. Total energy = 12434.0112 kcal/mol (12423.5568 without restraints) Performing minimization step: 1284. Total energy = 12427.5250 kcal/mol (12417.0730 without restraints) Performing minimization step: 1285. Total energy = 12421.0463 kcal/mol (12410.5968 without restraints) Performing minimization step: 1286. Total energy = 12414.5749 kcal/mol (12404.1279 without restraints) Performing minimization step: 1287. Total energy = 12408.1099 kcal/mol (12397.6654 without restraints) Performing minimization step: 1288. Total energy = 12401.6517 kcal/mol (12391.2096 without restraints) Performing minimization step: 1289. Total energy = 12395.2010 kcal/mol (12384.7613 without restraints) Performing minimization step: 1290. Total energy = 12388.7574 kcal/mol (12378.3203 without restraints) Performing minimization step: 1291. Total energy = 12382.3208 kcal/mol (12371.8862 without restraints) Performing minimization step: 1292. Total energy = 12375.8912 kcal/mol (12365.4591 without restraints) Performing minimization step: 1293. Total energy = 12369.4683 kcal/mol (12359.0386 without restraints) Performing minimization step: 1294. Total energy = 12363.0524 kcal/mol (12352.6252 without restraints) Performing minimization step: 1295. Total energy = 12356.6439 kcal/mol (12346.2191 without restraints) Performing minimization step: 1296. Total energy = 12350.2424 kcal/mol (12339.8202 without restraints) Performing minimization step: 1297. Total energy = 12343.8475 kcal/mol (12333.4278 without restraints) Performing minimization step: 1298. Total energy = 12337.4604 kcal/mol (12327.0432 without restraints) Performing minimization step: 1299. Total energy = 12331.0801 kcal/mol (12320.6652 without restraints) Performing minimization step: 1300. Total energy = 12324.7065 kcal/mol (12314.2941 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 12318.3397 kcal/mol (12307.9298 without restraints) Performing minimization step: 1302. Total energy = 12311.9799 kcal/mol (12301.5724 without restraints) Performing minimization step: 1303. Total energy = 12305.6273 kcal/mol (12295.2224 without restraints) Performing minimization step: 1304. Total energy = 12299.2823 kcal/mol (12288.8798 without restraints) Performing minimization step: 1305. Total energy = 12292.9433 kcal/mol (12282.5434 without restraints) Performing minimization step: 1306. Total energy = 12286.6114 kcal/mol (12276.2139 without restraints) Performing minimization step: 1307. Total energy = 12280.2863 kcal/mol (12269.8911 without restraints) Performing minimization step: 1308. Total energy = 12273.9678 kcal/mol (12263.5751 without restraints) Performing minimization step: 1309. Total energy = 12267.6566 kcal/mol (12257.2665 without restraints) Performing minimization step: 1310. Total energy = 12261.3523 kcal/mol (12250.9647 without restraints) Performing minimization step: 1311. Total energy = 12255.0547 kcal/mol (12244.6696 without restraints) Performing minimization step: 1312. Total energy = 12248.7638 kcal/mol (12238.3811 without restraints) Performing minimization step: 1313. Total energy = 12242.4801 kcal/mol (12232.0998 without restraints) Performing minimization step: 1314. Total energy = 12236.2030 kcal/mol (12225.8253 without restraints) Performing minimization step: 1315. Total energy = 12229.9333 kcal/mol (12219.5581 without restraints) Performing minimization step: 1316. Total energy = 12223.6700 kcal/mol (12213.2972 without restraints) Performing minimization step: 1317. Total energy = 12217.4137 kcal/mol (12207.0434 without restraints) Performing minimization step: 1318. Total energy = 12211.1639 kcal/mol (12200.7961 without restraints) Performing minimization step: 1319. Total energy = 12204.9210 kcal/mol (12194.5556 without restraints) Performing minimization step: 1320. Total energy = 12198.6851 kcal/mol (12188.3222 without restraints) Performing minimization step: 1321. Total energy = 12192.4557 kcal/mol (12182.0953 without restraints) Performing minimization step: 1322. Total energy = 12186.2331 kcal/mol (12175.8751 without restraints) Performing minimization step: 1323. Total energy = 12180.0180 kcal/mol (12169.6625 without restraints) Performing minimization step: 1324. Total energy = 12173.8088 kcal/mol (12163.4556 without restraints) Performing minimization step: 1325. Total energy = 12167.6063 kcal/mol (12157.2558 without restraints) Performing minimization step: 1326. Total energy = 12161.4106 kcal/mol (12151.0624 without restraints) Performing minimization step: 1327. Total energy = 12155.2216 kcal/mol (12144.8759 without restraints) Performing minimization step: 1328. Total energy = 12149.0392 kcal/mol (12138.6960 without restraints) Performing minimization step: 1329. Total energy = 12142.8633 kcal/mol (12132.5226 without restraints) Performing minimization step: 1330. Total energy = 12136.6946 kcal/mol (12126.3563 without restraints) Performing minimization step: 1331. Total energy = 12130.5324 kcal/mol (12120.1966 without restraints) Performing minimization step: 1332. Total energy = 12124.3772 kcal/mol (12114.0439 without restraints) Performing minimization step: 1333. Total energy = 12118.2283 kcal/mol (12107.8974 without restraints) Performing minimization step: 1334. Total energy = 12112.0868 kcal/mol (12101.7586 without restraints) Performing minimization step: 1335. Total energy = 12105.9516 kcal/mol (12095.6256 without restraints) Performing minimization step: 1336. Total energy = 12099.8228 kcal/mol (12089.4993 without restraints) Performing minimization step: 1337. Total energy = 12093.7004 kcal/mol (12083.3793 without restraints) Performing minimization step: 1338. Total energy = 12087.5848 kcal/mol (12077.2662 without restraints) Performing minimization step: 1339. Total energy = 12081.4758 kcal/mol (12071.1597 without restraints) Performing minimization step: 1340. Total energy = 12075.3737 kcal/mol (12065.0601 without restraints) Performing minimization step: 1341. Total energy = 12069.2782 kcal/mol (12058.9672 without restraints) Performing minimization step: 1342. Total energy = 12063.1893 kcal/mol (12052.8806 without restraints) Performing minimization step: 1343. Total energy = 12057.1070 kcal/mol (12046.8007 without restraints) Performing minimization step: 1344. Total energy = 12051.0308 kcal/mol (12040.7270 without restraints) Performing minimization step: 1345. Total energy = 12044.9614 kcal/mol (12034.6601 without restraints) Performing minimization step: 1346. Total energy = 12038.8988 kcal/mol (12028.5999 without restraints) Performing minimization step: 1347. Total energy = 12032.8425 kcal/mol (12022.5461 without restraints) Performing minimization step: 1348. Total energy = 12026.7928 kcal/mol (12016.4988 without restraints) Performing minimization step: 1349. Total energy = 12020.7495 kcal/mol (12010.4581 without restraints) Performing minimization step: 1350. Total energy = 12014.7128 kcal/mol (12004.4238 without restraints) Performing minimization step: 1351. Total energy = 12008.6828 kcal/mol (11998.3962 without restraints) Performing minimization step: 1352. Total energy = 12002.6591 kcal/mol (11992.3750 without restraints) Performing minimization step: 1353. Total energy = 11996.6421 kcal/mol (11986.3605 without restraints) Performing minimization step: 1354. Total energy = 11990.6313 kcal/mol (11980.3523 without restraints) Performing minimization step: 1355. Total energy = 11984.6271 kcal/mol (11974.3504 without restraints) Performing minimization step: 1356. Total energy = 11978.6294 kcal/mol (11968.3550 without restraints) Performing minimization step: 1357. Total energy = 11972.6380 kcal/mol (11962.3663 without restraints) Performing minimization step: 1358. Total energy = 11966.6533 kcal/mol (11956.3840 without restraints) Performing minimization step: 1359. Total energy = 11960.6749 kcal/mol (11950.4082 without restraints) Performing minimization step: 1360. Total energy = 11954.7034 kcal/mol (11944.4391 without restraints) Performing minimization step: 1361. Total energy = 11948.7382 kcal/mol (11938.4763 without restraints) Performing minimization step: 1362. Total energy = 11942.7795 kcal/mol (11932.5201 without restraints) Performing minimization step: 1363. Total energy = 11936.8266 kcal/mol (11926.5696 without restraints) Performing minimization step: 1364. Total energy = 11930.8804 kcal/mol (11920.6259 without restraints) Performing minimization step: 1365. Total energy = 11924.9407 kcal/mol (11914.6886 without restraints) Performing minimization step: 1366. Total energy = 11919.0071 kcal/mol (11908.7572 without restraints) Performing minimization step: 1367. Total energy = 11913.0800 kcal/mol (11902.8328 without restraints) Performing minimization step: 1368. Total energy = 11907.1593 kcal/mol (11896.9146 without restraints) Performing minimization step: 1369. Total energy = 11901.2451 kcal/mol (11891.0029 without restraints) Performing minimization step: 1370. Total energy = 11895.3375 kcal/mol (11885.0977 without restraints) Performing minimization step: 1371. Total energy = 11889.4360 kcal/mol (11879.1986 without restraints) Performing minimization step: 1372. Total energy = 11883.5409 kcal/mol (11873.3060 without restraints) Performing minimization step: 1373. Total energy = 11877.6522 kcal/mol (11867.4197 without restraints) Performing minimization step: 1374. Total energy = 11871.7694 kcal/mol (11861.5394 without restraints) Performing minimization step: 1375. Total energy = 11865.8930 kcal/mol (11855.6655 without restraints) Performing minimization step: 1376. Total energy = 11860.0234 kcal/mol (11849.7985 without restraints) Performing minimization step: 1377. Total energy = 11854.1602 kcal/mol (11843.9375 without restraints) Performing minimization step: 1378. Total energy = 11848.3029 kcal/mol (11838.0827 without restraints) Performing minimization step: 1379. Total energy = 11842.4521 kcal/mol (11832.2345 without restraints) Performing minimization step: 1380. Total energy = 11836.6074 kcal/mol (11826.3921 without restraints) Performing minimization step: 1381. Total energy = 11830.7690 kcal/mol (11820.5561 without restraints) Performing minimization step: 1382. Total energy = 11824.9368 kcal/mol (11814.7266 without restraints) Performing minimization step: 1383. Total energy = 11819.1111 kcal/mol (11808.9031 without restraints) Performing minimization step: 1384. Total energy = 11813.2916 kcal/mol (11803.0862 without restraints) Performing minimization step: 1385. Total energy = 11807.4785 kcal/mol (11797.2755 without restraints) Performing minimization step: 1386. Total energy = 11801.6717 kcal/mol (11791.4712 without restraints) Performing minimization step: 1387. Total energy = 11795.8712 kcal/mol (11785.6732 without restraints) Performing minimization step: 1388. Total energy = 11790.0766 kcal/mol (11779.8809 without restraints) Performing minimization step: 1389. Total energy = 11784.2882 kcal/mol (11774.0949 without restraints) Performing minimization step: 1390. Total energy = 11778.5057 kcal/mol (11768.3147 without restraints) Performing minimization step: 1391. Total energy = 11772.7295 kcal/mol (11762.5412 without restraints) Performing minimization step: 1392. Total energy = 11766.9595 kcal/mol (11756.7737 without restraints) Performing minimization step: 1393. Total energy = 11761.1961 kcal/mol (11751.0127 without restraints) Performing minimization step: 1394. Total energy = 11755.4384 kcal/mol (11745.2573 without restraints) Performing minimization step: 1395. Total energy = 11749.6870 kcal/mol (11739.5085 without restraints) Performing minimization step: 1396. Total energy = 11743.9418 kcal/mol (11733.7657 without restraints) Performing minimization step: 1397. Total energy = 11738.2028 kcal/mol (11728.0292 without restraints) Performing minimization step: 1398. Total energy = 11732.4699 kcal/mol (11722.2988 without restraints) Performing minimization step: 1399. Total energy = 11726.7436 kcal/mol (11716.5749 without restraints) Performing minimization step: 1400. Total energy = 11721.0228 kcal/mol (11710.8566 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 11715.3084 kcal/mol (11705.1446 without restraints) Performing minimization step: 1402. Total energy = 11709.6001 kcal/mol (11699.4388 without restraints) Performing minimization step: 1403. Total energy = 11703.8981 kcal/mol (11693.7391 without restraints) Performing minimization step: 1404. Total energy = 11698.2017 kcal/mol (11688.0451 without restraints) Performing minimization step: 1405. Total energy = 11692.5116 kcal/mol (11682.3576 without restraints) Performing minimization step: 1406. Total energy = 11686.8278 kcal/mol (11676.6762 without restraints) Performing minimization step: 1407. Total energy = 11681.1504 kcal/mol (11671.0013 without restraints) Performing minimization step: 1408. Total energy = 11675.4787 kcal/mol (11665.3320 without restraints) Performing minimization step: 1409. Total energy = 11669.8130 kcal/mol (11659.6687 without restraints) Performing minimization step: 1410. Total energy = 11664.1533 kcal/mol (11654.0115 without restraints) Performing minimization step: 1411. Total energy = 11658.4997 kcal/mol (11648.3604 without restraints) Performing minimization step: 1412. Total energy = 11652.8522 kcal/mol (11642.7155 without restraints) Performing minimization step: 1413. Total energy = 11647.2109 kcal/mol (11637.0765 without restraints) Performing minimization step: 1414. Total energy = 11641.5755 kcal/mol (11631.4435 without restraints) Performing minimization step: 1415. Total energy = 11635.9461 kcal/mol (11625.8165 without restraints) Performing minimization step: 1416. Total energy = 11630.3230 kcal/mol (11620.1959 without restraints) Performing minimization step: 1417. Total energy = 11624.7055 kcal/mol (11614.5808 without restraints) Performing minimization step: 1418. Total energy = 11619.0943 kcal/mol (11608.9720 without restraints) Performing minimization step: 1419. Total energy = 11613.4889 kcal/mol (11603.3691 without restraints) Performing minimization step: 1420. Total energy = 11607.8896 kcal/mol (11597.7723 without restraints) Performing minimization step: 1421. Total energy = 11602.2966 kcal/mol (11592.1817 without restraints) Performing minimization step: 1422. Total energy = 11596.7092 kcal/mol (11586.5967 without restraints) Performing minimization step: 1423. Total energy = 11591.1278 kcal/mol (11581.0177 without restraints) Performing minimization step: 1424. Total energy = 11585.5524 kcal/mol (11575.4450 without restraints) Performing minimization step: 1425. Total energy = 11579.9828 kcal/mol (11569.8776 without restraints) Performing minimization step: 1426. Total energy = 11574.4191 kcal/mol (11564.3165 without restraints) Performing minimization step: 1427. Total energy = 11568.8614 kcal/mol (11558.7612 without restraints) Performing minimization step: 1428. Total energy = 11563.3094 kcal/mol (11553.2115 without restraints) Performing minimization step: 1429. Total energy = 11557.7636 kcal/mol (11547.6681 without restraints) Performing minimization step: 1430. Total energy = 11552.2231 kcal/mol (11542.1301 without restraints) Performing minimization step: 1431. Total energy = 11546.6890 kcal/mol (11536.5985 without restraints) Performing minimization step: 1432. Total energy = 11541.1609 kcal/mol (11531.0729 without restraints) Performing minimization step: 1433. Total energy = 11535.6390 kcal/mol (11525.5535 without restraints) Performing minimization step: 1434. Total energy = 11530.1223 kcal/mol (11520.0392 without restraints) Performing minimization step: 1435. Total energy = 11524.6117 kcal/mol (11514.5308 without restraints) Performing minimization step: 1436. Total energy = 11519.1068 kcal/mol (11509.0285 without restraints) Performing minimization step: 1437. Total energy = 11513.6085 kcal/mol (11503.5326 without restraints) Performing minimization step: 1438. Total energy = 11508.1157 kcal/mol (11498.0424 without restraints) Performing minimization step: 1439. Total energy = 11502.6291 kcal/mol (11492.5581 without restraints) Performing minimization step: 1440. Total energy = 11497.1479 kcal/mol (11487.0793 without restraints) Performing minimization step: 1441. Total energy = 11491.6730 kcal/mol (11481.6070 without restraints) Performing minimization step: 1442. Total energy = 11486.2037 kcal/mol (11476.1401 without restraints) Performing minimization step: 1443. Total energy = 11480.7400 kcal/mol (11470.6788 without restraints) Performing minimization step: 1444. Total energy = 11475.2824 kcal/mol (11465.2235 without restraints) Performing minimization step: 1445. Total energy = 11469.8301 kcal/mol (11459.7738 without restraints) Performing minimization step: 1446. Total energy = 11464.3838 kcal/mol (11454.3299 without restraints) Performing minimization step: 1447. Total energy = 11458.9433 kcal/mol (11448.8918 without restraints) Performing minimization step: 1448. Total energy = 11453.5086 kcal/mol (11443.4596 without restraints) Performing minimization step: 1449. Total energy = 11448.0796 kcal/mol (11438.0330 without restraints) Performing minimization step: 1450. Total energy = 11442.6564 kcal/mol (11432.6122 without restraints) Performing minimization step: 1451. Total energy = 11437.2391 kcal/mol (11427.1973 without restraints) Performing minimization step: 1452. Total energy = 11431.8273 kcal/mol (11421.7879 without restraints) Performing minimization step: 1453. Total energy = 11426.4215 kcal/mol (11416.3846 without restraints) Performing minimization step: 1454. Total energy = 11421.0214 kcal/mol (11410.9869 without restraints) Performing minimization step: 1455. Total energy = 11415.6269 kcal/mol (11405.5949 without restraints) Performing minimization step: 1456. Total energy = 11410.2385 kcal/mol (11400.2090 without restraints) Performing minimization step: 1457. Total energy = 11404.8555 kcal/mol (11394.8284 without restraints) Performing minimization step: 1458. Total energy = 11399.4784 kcal/mol (11389.4537 without restraints) Performing minimization step: 1459. Total energy = 11394.1070 kcal/mol (11384.0847 without restraints) Performing minimization step: 1460. Total energy = 11388.7411 kcal/mol (11378.7212 without restraints) Performing minimization step: 1461. Total energy = 11383.3809 kcal/mol (11373.3635 without restraints) Performing minimization step: 1462. Total energy = 11378.0263 kcal/mol (11368.0114 without restraints) Performing minimization step: 1463. Total energy = 11372.6778 kcal/mol (11362.6652 without restraints) Performing minimization step: 1464. Total energy = 11367.3346 kcal/mol (11357.3245 without restraints) Performing minimization step: 1465. Total energy = 11361.9973 kcal/mol (11351.9895 without restraints) Performing minimization step: 1466. Total energy = 11356.6653 kcal/mol (11346.6601 without restraints) Performing minimization step: 1467. Total energy = 11351.3391 kcal/mol (11341.3363 without restraints) Performing minimization step: 1468. Total energy = 11346.0185 kcal/mol (11336.0180 without restraints) Performing minimization step: 1469. Total energy = 11340.7035 kcal/mol (11330.7055 without restraints) Performing minimization step: 1470. Total energy = 11335.3942 kcal/mol (11325.3987 without restraints) Performing minimization step: 1471. Total energy = 11330.0907 kcal/mol (11320.0975 without restraints) Performing minimization step: 1472. Total energy = 11324.7925 kcal/mol (11314.8018 without restraints) Performing minimization step: 1473. Total energy = 11319.4998 kcal/mol (11309.5116 without restraints) Performing minimization step: 1474. Total energy = 11314.2131 kcal/mol (11304.2272 without restraints) Performing minimization step: 1475. Total energy = 11308.9320 kcal/mol (11298.9485 without restraints) Performing minimization step: 1476. Total energy = 11303.6570 kcal/mol (11293.6760 without restraints) Performing minimization step: 1477. Total energy = 11298.3862 kcal/mol (11288.4077 without restraints) Performing minimization step: 1478. Total energy = 11293.1222 kcal/mol (11283.1461 without restraints) Performing minimization step: 1479. Total energy = 11287.8633 kcal/mol (11277.8896 without restraints) Performing minimization step: 1480. Total energy = 11282.6100 kcal/mol (11272.6387 without restraints) Performing minimization step: 1481. Total energy = 11277.3622 kcal/mol (11267.3934 without restraints) Performing minimization step: 1482. Total energy = 11272.1200 kcal/mol (11262.1536 without restraints) Performing minimization step: 1483. Total energy = 11266.8835 kcal/mol (11256.9195 without restraints) Performing minimization step: 1484. Total energy = 11261.6527 kcal/mol (11251.6911 without restraints) Performing minimization step: 1485. Total energy = 11256.4271 kcal/mol (11246.4679 without restraints) Performing minimization step: 1486. Total energy = 11251.2070 kcal/mol (11241.2503 without restraints) Performing minimization step: 1487. Total energy = 11245.9927 kcal/mol (11236.0384 without restraints) Performing minimization step: 1488. Total energy = 11240.7836 kcal/mol (11230.8317 without restraints) Performing minimization step: 1489. Total energy = 11235.5799 kcal/mol (11225.6305 without restraints) Performing minimization step: 1490. Total energy = 11230.3820 kcal/mol (11220.4349 without restraints) Performing minimization step: 1491. Total energy = 11225.1893 kcal/mol (11215.2447 without restraints) Performing minimization step: 1492. Total energy = 11220.0017 kcal/mol (11210.0596 without restraints) Performing minimization step: 1493. Total energy = 11214.8202 kcal/mol (11204.8805 without restraints) Performing minimization step: 1494. Total energy = 11209.6441 kcal/mol (11199.7067 without restraints) Performing minimization step: 1495. Total energy = 11204.4731 kcal/mol (11194.5382 without restraints) Performing minimization step: 1496. Total energy = 11199.3078 kcal/mol (11189.3753 without restraints) Performing minimization step: 1497. Total energy = 11194.1484 kcal/mol (11184.2183 without restraints) Performing minimization step: 1498. Total energy = 11188.9940 kcal/mol (11179.0663 without restraints) Performing minimization step: 1499. Total energy = 11183.8450 kcal/mol (11173.9198 without restraints) Performing minimization step: 1500. Total energy = 11178.7013 kcal/mol (11168.7785 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 11173.5631 kcal/mol (11163.6427 without restraints) Performing minimization step: 1502. Total energy = 11168.4304 kcal/mol (11158.5125 without restraints) Performing minimization step: 1503. Total energy = 11163.3026 kcal/mol (11153.3871 without restraints) Performing minimization step: 1504. Total energy = 11158.1808 kcal/mol (11148.2678 without restraints) Performing minimization step: 1505. Total energy = 11153.0645 kcal/mol (11143.1539 without restraints) Performing minimization step: 1506. Total energy = 11147.9537 kcal/mol (11138.0454 without restraints) Performing minimization step: 1507. Total energy = 11142.8479 kcal/mol (11132.9420 without restraints) Performing minimization step: 1508. Total energy = 11137.7472 kcal/mol (11127.8437 without restraints) Performing minimization step: 1509. Total energy = 11132.6521 kcal/mol (11122.7511 without restraints) Performing minimization step: 1510. Total energy = 11127.5624 kcal/mol (11117.6638 without restraints) Performing minimization step: 1511. Total energy = 11122.4782 kcal/mol (11112.5820 without restraints) Performing minimization step: 1512. Total energy = 11117.3992 kcal/mol (11107.5054 without restraints) Performing minimization step: 1513. Total energy = 11112.3255 kcal/mol (11102.4341 without restraints) Performing minimization step: 1514. Total energy = 11107.2571 kcal/mol (11097.3681 without restraints) Performing minimization step: 1515. Total energy = 11102.1940 kcal/mol (11092.3075 without restraints) Performing minimization step: 1516. Total energy = 11097.1363 kcal/mol (11087.2521 without restraints) Performing minimization step: 1517. Total energy = 11092.0837 kcal/mol (11082.2020 without restraints) Performing minimization step: 1518. Total energy = 11087.0366 kcal/mol (11077.1573 without restraints) Performing minimization step: 1519. Total energy = 11081.9950 kcal/mol (11072.1181 without restraints) Performing minimization step: 1520. Total energy = 11076.9584 kcal/mol (11067.0839 without restraints) Performing minimization step: 1521. Total energy = 11071.9275 kcal/mol (11062.0554 without restraints) Performing minimization step: 1522. Total energy = 11066.9014 kcal/mol (11057.0318 without restraints) Performing minimization step: 1523. Total energy = 11061.8808 kcal/mol (11052.0134 without restraints) Performing minimization step: 1524. Total energy = 11056.8650 kcal/mol (11047.0001 without restraints) Performing minimization step: 1525. Total energy = 11051.8548 kcal/mol (11041.9922 without restraints) Performing minimization step: 1526. Total energy = 11046.8497 kcal/mol (11036.9896 without restraints) Performing minimization step: 1527. Total energy = 11041.8504 kcal/mol (11031.9928 without restraints) Performing minimization step: 1528. Total energy = 11036.8559 kcal/mol (11027.0007 without restraints) Performing minimization step: 1529. Total energy = 11031.8669 kcal/mol (11022.0141 without restraints) Performing minimization step: 1530. Total energy = 11026.8829 kcal/mol (11017.0325 without restraints) Performing minimization step: 1531. Total energy = 11021.9042 kcal/mol (11012.0562 without restraints) Performing minimization step: 1532. Total energy = 11016.9307 kcal/mol (11007.0852 without restraints) Performing minimization step: 1533. Total energy = 11011.9621 kcal/mol (11002.1189 without restraints) Performing minimization step: 1534. Total energy = 11006.9992 kcal/mol (10997.1585 without restraints) Performing minimization step: 1535. Total energy = 11002.0414 kcal/mol (10992.2031 without restraints) Performing minimization step: 1536. Total energy = 10997.0880 kcal/mol (10987.2521 without restraints) Performing minimization step: 1537. Total energy = 10992.1403 kcal/mol (10982.3068 without restraints) Performing minimization step: 1538. Total energy = 10987.1979 kcal/mol (10977.3667 without restraints) Performing minimization step: 1539. Total energy = 10982.2606 kcal/mol (10972.4319 without restraints) Performing minimization step: 1540. Total energy = 10977.3284 kcal/mol (10967.5019 without restraints) Performing minimization step: 1541. Total energy = 10972.4010 kcal/mol (10962.5770 without restraints) Performing minimization step: 1542. Total energy = 10967.4791 kcal/mol (10957.6576 without restraints) Performing minimization step: 1543. Total energy = 10962.5626 kcal/mol (10952.7435 without restraints) Performing minimization step: 1544. Total energy = 10957.6508 kcal/mol (10947.8341 without restraints) Performing minimization step: 1545. Total energy = 10952.7442 kcal/mol (10942.9300 without restraints) Performing minimization step: 1546. Total energy = 10947.8428 kcal/mol (10938.0308 without restraints) Performing minimization step: 1547. Total energy = 10942.9459 kcal/mol (10933.1363 without restraints) Performing minimization step: 1548. Total energy = 10938.0544 kcal/mol (10928.2473 without restraints) Performing minimization step: 1549. Total energy = 10933.1680 kcal/mol (10923.3632 without restraints) Performing minimization step: 1550. Total energy = 10928.2866 kcal/mol (10918.4843 without restraints) Performing minimization step: 1551. Total energy = 10923.4102 kcal/mol (10913.6103 without restraints) Performing minimization step: 1552. Total energy = 10918.5396 kcal/mol (10908.7422 without restraints) Performing minimization step: 1553. Total energy = 10913.6737 kcal/mol (10903.8785 without restraints) Performing minimization step: 1554. Total energy = 10908.8127 kcal/mol (10899.0200 without restraints) Performing minimization step: 1555. Total energy = 10903.9571 kcal/mol (10894.1668 without restraints) Performing minimization step: 1556. Total energy = 10899.1062 kcal/mol (10889.3183 without restraints) Performing minimization step: 1557. Total energy = 10894.2602 kcal/mol (10884.4746 without restraints) Performing minimization step: 1558. Total energy = 10889.4193 kcal/mol (10879.6361 without restraints) Performing minimization step: 1559. Total energy = 10884.5839 kcal/mol (10874.8031 without restraints) Performing minimization step: 1560. Total energy = 10879.7526 kcal/mol (10869.9740 without restraints) Performing minimization step: 1561. Total energy = 10874.9263 kcal/mol (10865.1502 without restraints) Performing minimization step: 1562. Total energy = 10870.1053 kcal/mol (10860.3317 without restraints) Performing minimization step: 1563. Total energy = 10865.2893 kcal/mol (10855.5180 without restraints) Performing minimization step: 1564. Total energy = 10860.4780 kcal/mol (10850.7091 without restraints) Performing minimization step: 1565. Total energy = 10855.6721 kcal/mol (10845.9058 without restraints) Performing minimization step: 1566. Total energy = 10850.8713 kcal/mol (10841.1073 without restraints) Performing minimization step: 1567. Total energy = 10846.0753 kcal/mol (10836.3137 without restraints) Performing minimization step: 1568. Total energy = 10841.2846 kcal/mol (10831.5253 without restraints) Performing minimization step: 1569. Total energy = 10836.4981 kcal/mol (10826.7412 without restraints) Performing minimization step: 1570. Total energy = 10831.7173 kcal/mol (10821.9628 without restraints) Performing minimization step: 1571. Total energy = 10826.9408 kcal/mol (10817.1888 without restraints) Performing minimization step: 1572. Total energy = 10822.1695 kcal/mol (10812.4198 without restraints) Performing minimization step: 1573. Total energy = 10817.4034 kcal/mol (10807.6561 without restraints) Performing minimization step: 1574. Total energy = 10812.6419 kcal/mol (10802.8970 without restraints) Performing minimization step: 1575. Total energy = 10807.8853 kcal/mol (10798.1428 without restraints) Performing minimization step: 1576. Total energy = 10803.1337 kcal/mol (10793.3935 without restraints) Performing minimization step: 1577. Total energy = 10798.3871 kcal/mol (10788.6494 without restraints) Performing minimization step: 1578. Total energy = 10793.6460 kcal/mol (10783.9106 without restraints) Performing minimization step: 1579. Total energy = 10788.9088 kcal/mol (10779.1758 without restraints) Performing minimization step: 1580. Total energy = 10784.1767 kcal/mol (10774.4462 without restraints) Performing minimization step: 1581. Total energy = 10779.4496 kcal/mol (10769.7212 without restraints) Performing minimization step: 1582. Total energy = 10774.7273 kcal/mol (10765.0016 without restraints) Performing minimization step: 1583. Total energy = 10770.0097 kcal/mol (10760.2862 without restraints) Performing minimization step: 1584. Total energy = 10765.2972 kcal/mol (10755.5761 without restraints) Performing minimization step: 1585. Total energy = 10760.5893 kcal/mol (10750.8706 without restraints) Performing minimization step: 1586. Total energy = 10755.8862 kcal/mol (10746.1699 without restraints) Performing minimization step: 1587. Total energy = 10751.1880 kcal/mol (10741.4741 without restraints) Performing minimization step: 1588. Total energy = 10746.4947 kcal/mol (10736.7833 without restraints) Performing minimization step: 1589. Total energy = 10741.8062 kcal/mol (10732.0970 without restraints) Performing minimization step: 1590. Total energy = 10737.1222 kcal/mol (10727.4154 without restraints) Performing minimization step: 1591. Total energy = 10732.4435 kcal/mol (10722.7392 without restraints) Performing minimization step: 1592. Total energy = 10727.7693 kcal/mol (10718.0673 without restraints) Performing minimization step: 1593. Total energy = 10723.0999 kcal/mol (10713.4002 without restraints) Performing minimization step: 1594. Total energy = 10718.4356 kcal/mol (10708.7384 without restraints) Performing minimization step: 1595. Total energy = 10713.7758 kcal/mol (10704.0809 without restraints) Performing minimization step: 1596. Total energy = 10709.1211 kcal/mol (10699.4286 without restraints) Performing minimization step: 1597. Total energy = 10704.4707 kcal/mol (10694.7805 without restraints) Performing minimization step: 1598. Total energy = 10699.8250 kcal/mol (10690.1373 without restraints) Performing minimization step: 1599. Total energy = 10695.1842 kcal/mol (10685.4988 without restraints) Performing minimization step: 1600. Total energy = 10690.5479 kcal/mol (10680.8648 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 10685.9165 kcal/mol (10676.2359 without restraints) Performing minimization step: 1602. Total energy = 10681.2897 kcal/mol (10671.6115 without restraints) Performing minimization step: 1603. Total energy = 10676.6677 kcal/mol (10666.9918 without restraints) Performing minimization step: 1604. Total energy = 10672.0505 kcal/mol (10662.3770 without restraints) Performing minimization step: 1605. Total energy = 10667.4379 kcal/mol (10657.7668 without restraints) Performing minimization step: 1606. Total energy = 10662.8299 kcal/mol (10653.1612 without restraints) Performing minimization step: 1607. Total energy = 10658.2265 kcal/mol (10648.5601 without restraints) Performing minimization step: 1608. Total energy = 10653.6282 kcal/mol (10643.9642 without restraints) Performing minimization step: 1609. Total energy = 10649.0343 kcal/mol (10639.3727 without restraints) Performing minimization step: 1610. Total energy = 10644.4453 kcal/mol (10634.7861 without restraints) Performing minimization step: 1611. Total energy = 10639.8611 kcal/mol (10630.2042 without restraints) Performing minimization step: 1612. Total energy = 10635.2812 kcal/mol (10625.6267 without restraints) Performing minimization step: 1613. Total energy = 10630.7059 kcal/mol (10621.0537 without restraints) Performing minimization step: 1614. Total energy = 10626.1353 kcal/mol (10616.4855 without restraints) Performing minimization step: 1615. Total energy = 10621.5695 kcal/mol (10611.9221 without restraints) Performing minimization step: 1616. Total energy = 10617.0081 kcal/mol (10607.3630 without restraints) Performing minimization step: 1617. Total energy = 10612.4511 kcal/mol (10602.8084 without restraints) Performing minimization step: 1618. Total energy = 10607.8992 kcal/mol (10598.2588 without restraints) Performing minimization step: 1619. Total energy = 10603.3516 kcal/mol (10593.7137 without restraints) Performing minimization step: 1620. Total energy = 10598.8088 kcal/mol (10589.1732 without restraints) Performing minimization step: 1621. Total energy = 10594.2703 kcal/mol (10584.6371 without restraints) Performing minimization step: 1622. Total energy = 10589.7365 kcal/mol (10580.1056 without restraints) Performing minimization step: 1623. Total energy = 10585.2070 kcal/mol (10575.5785 without restraints) Performing minimization step: 1624. Total energy = 10580.6823 kcal/mol (10571.0561 without restraints) Performing minimization step: 1625. Total energy = 10576.1626 kcal/mol (10566.5388 without restraints) Performing minimization step: 1626. Total energy = 10571.6471 kcal/mol (10562.0256 without restraints) Performing minimization step: 1627. Total energy = 10567.1361 kcal/mol (10557.5171 without restraints) Performing minimization step: 1628. Total energy = 10562.6297 kcal/mol (10553.0129 without restraints) Performing minimization step: 1629. Total energy = 10558.1277 kcal/mol (10548.5134 without restraints) Performing minimization step: 1630. Total energy = 10553.6305 kcal/mol (10544.0184 without restraints) Performing minimization step: 1631. Total energy = 10549.1375 kcal/mol (10539.5279 without restraints) Performing minimization step: 1632. Total energy = 10544.6492 kcal/mol (10535.0419 without restraints) Performing minimization step: 1633. Total energy = 10540.1654 kcal/mol (10530.5605 without restraints) Performing minimization step: 1634. Total energy = 10535.6865 kcal/mol (10526.0839 without restraints) Performing minimization step: 1635. Total energy = 10531.2118 kcal/mol (10521.6117 without restraints) Performing minimization step: 1636. Total energy = 10526.7415 kcal/mol (10517.1436 without restraints) Performing minimization step: 1637. Total energy = 10522.2756 kcal/mol (10512.6801 without restraints) Performing minimization step: 1638. Total energy = 10517.8138 kcal/mol (10508.2205 without restraints) Performing minimization step: 1639. Total energy = 10513.3568 kcal/mol (10503.7659 without restraints) Performing minimization step: 1640. Total energy = 10508.9038 kcal/mol (10499.3153 without restraints) Performing minimization step: 1641. Total energy = 10504.4556 kcal/mol (10494.8694 without restraints) Performing minimization step: 1642. Total energy = 10500.0118 kcal/mol (10490.4280 without restraints) Performing minimization step: 1643. Total energy = 10495.5723 kcal/mol (10485.9909 without restraints) Performing minimization step: 1644. Total energy = 10491.1377 kcal/mol (10481.5586 without restraints) Performing minimization step: 1645. Total energy = 10486.7073 kcal/mol (10477.1306 without restraints) Performing minimization step: 1646. Total energy = 10482.2816 kcal/mol (10472.7073 without restraints) Performing minimization step: 1647. Total energy = 10477.8607 kcal/mol (10468.2887 without restraints) Performing minimization step: 1648. Total energy = 10473.4435 kcal/mol (10463.8739 without restraints) Performing minimization step: 1649. Total energy = 10469.0312 kcal/mol (10459.4640 without restraints) Performing minimization step: 1650. Total energy = 10464.6228 kcal/mol (10455.0577 without restraints) Performing minimization step: 1651. Total energy = 10460.2188 kcal/mol (10450.6563 without restraints) Performing minimization step: 1652. Total energy = 10455.8194 kcal/mol (10446.2592 without restraints) Performing minimization step: 1653. Total energy = 10451.4247 kcal/mol (10441.8667 without restraints) Performing minimization step: 1654. Total energy = 10447.0340 kcal/mol (10437.4783 without restraints) Performing minimization step: 1655. Total energy = 10442.6472 kcal/mol (10433.0939 without restraints) Performing minimization step: 1656. Total energy = 10438.2648 kcal/mol (10428.7138 without restraints) Performing minimization step: 1657. Total energy = 10433.8868 kcal/mol (10424.3381 without restraints) Performing minimization step: 1658. Total energy = 10429.5129 kcal/mol (10419.9667 without restraints) Performing minimization step: 1659. Total energy = 10425.1433 kcal/mol (10415.5993 without restraints) Performing minimization step: 1660. Total energy = 10420.7788 kcal/mol (10411.2373 without restraints) Performing minimization step: 1661. Total energy = 10416.4180 kcal/mol (10406.8788 without restraints) Performing minimization step: 1662. Total energy = 10412.0615 kcal/mol (10402.5246 without restraints) Performing minimization step: 1663. Total energy = 10407.7095 kcal/mol (10398.1750 without restraints) Performing minimization step: 1664. Total energy = 10403.3618 kcal/mol (10393.8296 without restraints) Performing minimization step: 1665. Total energy = 10399.0184 kcal/mol (10389.4885 without restraints) Performing minimization step: 1666. Total energy = 10394.6792 kcal/mol (10385.1517 without restraints) Performing minimization step: 1667. Total energy = 10390.3443 kcal/mol (10380.8191 without restraints) Performing minimization step: 1668. Total energy = 10386.0137 kcal/mol (10376.4908 without restraints) Performing minimization step: 1669. Total energy = 10381.6873 kcal/mol (10372.1667 without restraints) Performing minimization step: 1670. Total energy = 10377.3657 kcal/mol (10367.8478 without restraints) Performing minimization step: 1671. Total energy = 10373.0477 kcal/mol (10363.5318 without restraints) Performing minimization step: 1672. Total energy = 10368.7341 kcal/mol (10359.2205 without restraints) Performing minimization step: 1673. Total energy = 10364.4244 kcal/mol (10354.9132 without restraints) Performing minimization step: 1674. Total energy = 10360.1198 kcal/mol (10350.6111 without restraints) Performing minimization step: 1675. Total energy = 10355.8192 kcal/mol (10346.3126 without restraints) Performing minimization step: 1676. Total energy = 10351.5224 kcal/mol (10342.0182 without restraints) Performing minimization step: 1677. Total energy = 10347.2298 kcal/mol (10337.7278 without restraints) Performing minimization step: 1678. Total energy = 10342.9414 kcal/mol (10333.4418 without restraints) Performing minimization step: 1679. Total energy = 10338.6570 kcal/mol (10329.1597 without restraints) Performing minimization step: 1680. Total energy = 10334.3773 kcal/mol (10324.8824 without restraints) Performing minimization step: 1681. Total energy = 10330.1017 kcal/mol (10320.6090 without restraints) Performing minimization step: 1682. Total energy = 10325.8300 kcal/mol (10316.3397 without restraints) Performing minimization step: 1683. Total energy = 10321.5624 kcal/mol (10312.0745 without restraints) Performing minimization step: 1684. Total energy = 10317.2992 kcal/mol (10307.8137 without restraints) Performing minimization step: 1685. Total energy = 10313.0403 kcal/mol (10303.5570 without restraints) Performing minimization step: 1686. Total energy = 10308.7852 kcal/mol (10299.3042 without restraints) Performing minimization step: 1687. Total energy = 10304.5344 kcal/mol (10295.0557 without restraints) Performing minimization step: 1688. Total energy = 10300.2874 kcal/mol (10290.8110 without restraints) Performing minimization step: 1689. Total energy = 10296.0446 kcal/mol (10286.5704 without restraints) Performing minimization step: 1690. Total energy = 10291.8067 kcal/mol (10282.3351 without restraints) Performing minimization step: 1691. Total energy = 10287.5719 kcal/mol (10278.1025 without restraints) Performing minimization step: 1692. Total energy = 10283.3415 kcal/mol (10273.8744 without restraints) Performing minimization step: 1693. Total energy = 10279.1150 kcal/mol (10269.6502 without restraints) Performing minimization step: 1694. Total energy = 10274.8927 kcal/mol (10265.4302 without restraints) Performing minimization step: 1695. Total energy = 10270.6747 kcal/mol (10261.2146 without restraints) Performing minimization step: 1696. Total energy = 10266.4606 kcal/mol (10257.0028 without restraints) Performing minimization step: 1697. Total energy = 10262.2510 kcal/mol (10252.7955 without restraints) Performing minimization step: 1698. Total energy = 10258.0450 kcal/mol (10248.5918 without restraints) Performing minimization step: 1699. Total energy = 10253.8431 kcal/mol (10244.3922 without restraints) Performing minimization step: 1700. Total energy = 10249.6452 kcal/mol (10240.1966 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 10245.4513 kcal/mol (10236.0049 without restraints) Performing minimization step: 1702. Total energy = 10241.2619 kcal/mol (10231.8179 without restraints) Performing minimization step: 1703. Total energy = 10237.0760 kcal/mol (10227.6344 without restraints) Performing minimization step: 1704. Total energy = 10232.8944 kcal/mol (10223.4551 without restraints) Performing minimization step: 1705. Total energy = 10228.7169 kcal/mol (10219.2798 without restraints) Performing minimization step: 1706. Total energy = 10224.5431 kcal/mol (10215.1083 without restraints) Performing minimization step: 1707. Total energy = 10220.3732 kcal/mol (10210.9408 without restraints) Performing minimization step: 1708. Total energy = 10216.2070 kcal/mol (10206.7769 without restraints) Performing minimization step: 1709. Total energy = 10212.0454 kcal/mol (10202.6176 without restraints) Performing minimization step: 1710. Total energy = 10207.8878 kcal/mol (10198.4623 without restraints) Performing minimization step: 1711. Total energy = 10203.7341 kcal/mol (10194.3110 without restraints) Performing minimization step: 1712. Total energy = 10199.5849 kcal/mol (10190.1639 without restraints) Performing minimization step: 1713. Total energy = 10195.4394 kcal/mol (10186.0207 without restraints) Performing minimization step: 1714. Total energy = 10191.2977 kcal/mol (10181.8813 without restraints) Performing minimization step: 1715. Total energy = 10187.1595 kcal/mol (10177.7455 without restraints) Performing minimization step: 1716. Total energy = 10183.0253 kcal/mol (10173.6136 without restraints) Performing minimization step: 1717. Total energy = 10178.8952 kcal/mol (10169.4858 without restraints) Performing minimization step: 1718. Total energy = 10174.7685 kcal/mol (10165.3613 without restraints) Performing minimization step: 1719. Total energy = 10170.6461 kcal/mol (10161.2413 without restraints) Performing minimization step: 1720. Total energy = 10166.5276 kcal/mol (10157.1250 without restraints) Performing minimization step: 1721. Total energy = 10162.4135 kcal/mol (10153.0133 without restraints) Performing minimization step: 1722. Total energy = 10158.3031 kcal/mol (10148.9054 without restraints) Performing minimization step: 1723. Total energy = 10154.1969 kcal/mol (10144.8012 without restraints) Performing minimization step: 1724. Total energy = 10150.0939 kcal/mol (10140.7005 without restraints) Performing minimization step: 1725. Total energy = 10145.9947 kcal/mol (10136.6036 without restraints) Performing minimization step: 1726. Total energy = 10141.8992 kcal/mol (10132.5104 without restraints) Performing minimization step: 1727. Total energy = 10137.8077 kcal/mol (10128.4210 without restraints) Performing minimization step: 1728. Total energy = 10133.7207 kcal/mol (10124.3364 without restraints) Performing minimization step: 1729. Total energy = 10129.6373 kcal/mol (10120.2553 without restraints) Performing minimization step: 1730. Total energy = 10125.5576 kcal/mol (10116.1780 without restraints) Performing minimization step: 1731. Total energy = 10121.4816 kcal/mol (10112.1043 without restraints) Performing minimization step: 1732. Total energy = 10117.4095 kcal/mol (10108.0345 without restraints) Performing minimization step: 1733. Total energy = 10113.3414 kcal/mol (10103.9686 without restraints) Performing minimization step: 1734. Total energy = 10109.2766 kcal/mol (10099.9061 without restraints) Performing minimization step: 1735. Total energy = 10105.2164 kcal/mol (10095.8479 without restraints) Performing minimization step: 1736. Total energy = 10101.1592 kcal/mol (10091.7934 without restraints) Performing minimization step: 1737. Total energy = 10097.1062 kcal/mol (10087.7425 without restraints) Performing minimization step: 1738. Total energy = 10093.0567 kcal/mol (10083.6954 without restraints) Performing minimization step: 1739. Total energy = 10089.0111 kcal/mol (10079.6520 without restraints) Performing minimization step: 1740. Total energy = 10084.9696 kcal/mol (10075.6129 without restraints) Performing minimization step: 1741. Total energy = 10080.9316 kcal/mol (10071.5770 without restraints) Performing minimization step: 1742. Total energy = 10076.8979 kcal/mol (10067.5457 without restraints) Performing minimization step: 1743. Total energy = 10072.8677 kcal/mol (10063.5179 without restraints) Performing minimization step: 1744. Total energy = 10068.8411 kcal/mol (10059.4934 without restraints) Performing minimization step: 1745. Total energy = 10064.8176 kcal/mol (10055.4722 without restraints) Performing minimization step: 1746. Total energy = 10060.7984 kcal/mol (10051.4554 without restraints) Performing minimization step: 1747. Total energy = 10056.7829 kcal/mol (10047.4420 without restraints) Performing minimization step: 1748. Total energy = 10052.7708 kcal/mol (10043.4322 without restraints) Performing minimization step: 1749. Total energy = 10048.7624 kcal/mol (10039.4262 without restraints) Performing minimization step: 1750. Total energy = 10044.7578 kcal/mol (10035.4237 without restraints) Performing minimization step: 1751. Total energy = 10040.7573 kcal/mol (10031.4255 without restraints) Performing minimization step: 1752. Total energy = 10036.7597 kcal/mol (10027.4302 without restraints) Performing minimization step: 1753. Total energy = 10032.7665 kcal/mol (10023.4392 without restraints) Performing minimization step: 1754. Total energy = 10028.7767 kcal/mol (10019.4516 without restraints) Performing minimization step: 1755. Total energy = 10024.7902 kcal/mol (10015.4674 without restraints) Performing minimization step: 1756. Total energy = 10020.8078 kcal/mol (10011.4875 without restraints) Performing minimization step: 1757. Total energy = 10016.8293 kcal/mol (10007.5111 without restraints) Performing minimization step: 1758. Total energy = 10012.8542 kcal/mol (10003.5382 without restraints) Performing minimization step: 1759. Total energy = 10008.8827 kcal/mol (9999.5690 without restraints) Performing minimization step: 1760. Total energy = 10004.9149 kcal/mol (9995.6035 without restraints) Performing minimization step: 1761. Total energy = 10000.9507 kcal/mol (9991.6416 without restraints) Performing minimization step: 1762. Total energy = 9996.9901 kcal/mol (9987.6832 without restraints) Performing minimization step: 1763. Total energy = 9993.0331 kcal/mol (9983.7285 without restraints) Performing minimization step: 1764. Total energy = 9989.0794 kcal/mol (9979.7770 without restraints) Performing minimization step: 1765. Total energy = 9985.1295 kcal/mol (9975.8296 without restraints) Performing minimization step: 1766. Total energy = 9981.1837 kcal/mol (9971.8858 without restraints) Performing minimization step: 1767. Total energy = 9977.2411 kcal/mol (9967.9455 without restraints) Performing minimization step: 1768. Total energy = 9973.3023 kcal/mol (9964.0089 without restraints) Performing minimization step: 1769. Total energy = 9969.3668 kcal/mol (9960.0758 without restraints) Performing minimization step: 1770. Total energy = 9965.4359 kcal/mol (9956.1473 without restraints) Performing minimization step: 1771. Total energy = 9961.5081 kcal/mol (9952.2215 without restraints) Performing minimization step: 1772. Total energy = 9957.5834 kcal/mol (9948.2990 without restraints) Performing minimization step: 1773. Total energy = 9953.6625 kcal/mol (9944.3805 without restraints) Performing minimization step: 1774. Total energy = 9949.7452 kcal/mol (9940.4653 without restraints) Performing minimization step: 1775. Total energy = 9945.8311 kcal/mol (9936.5535 without restraints) Performing minimization step: 1776. Total energy = 9941.9206 kcal/mol (9932.6452 without restraints) Performing minimization step: 1777. Total energy = 9938.0135 kcal/mol (9928.7404 without restraints) Performing minimization step: 1778. Total energy = 9934.1103 kcal/mol (9924.8395 without restraints) Performing minimization step: 1779. Total energy = 9930.2106 kcal/mol (9920.9420 without restraints) Performing minimization step: 1780. Total energy = 9926.3142 kcal/mol (9917.0478 without restraints) Performing minimization step: 1781. Total energy = 9922.4212 kcal/mol (9913.1571 without restraints) Performing minimization step: 1782. Total energy = 9918.5317 kcal/mol (9909.2698 without restraints) Performing minimization step: 1783. Total energy = 9914.6457 kcal/mol (9905.3861 without restraints) Performing minimization step: 1784. Total energy = 9910.7631 kcal/mol (9901.5058 without restraints) Performing minimization step: 1785. Total energy = 9906.8846 kcal/mol (9897.6295 without restraints) Performing minimization step: 1786. Total energy = 9903.0092 kcal/mol (9893.7563 without restraints) Performing minimization step: 1787. Total energy = 9899.1377 kcal/mol (9889.8871 without restraints) Performing minimization step: 1788. Total energy = 9895.2688 kcal/mol (9886.0203 without restraints) Performing minimization step: 1789. Total energy = 9891.4036 kcal/mol (9882.1574 without restraints) Performing minimization step: 1790. Total energy = 9887.5418 kcal/mol (9878.2979 without restraints) Performing minimization step: 1791. Total energy = 9883.6835 kcal/mol (9874.4418 without restraints) Performing minimization step: 1792. Total energy = 9879.8286 kcal/mol (9870.5891 without restraints) Performing minimization step: 1793. Total energy = 9875.9770 kcal/mol (9866.7398 without restraints) Performing minimization step: 1794. Total energy = 9872.1289 kcal/mol (9862.8939 without restraints) Performing minimization step: 1795. Total energy = 9868.2844 kcal/mol (9859.0516 without restraints) Performing minimization step: 1796. Total energy = 9864.4432 kcal/mol (9855.2128 without restraints) Performing minimization step: 1797. Total energy = 9860.6054 kcal/mol (9851.3771 without restraints) Performing minimization step: 1798. Total energy = 9856.7707 kcal/mol (9847.5445 without restraints) Performing minimization step: 1799. Total energy = 9852.9398 kcal/mol (9843.7160 without restraints) Performing minimization step: 1800. Total energy = 9849.1125 kcal/mol (9839.8909 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 9845.2886 kcal/mol (9836.0692 without restraints) Performing minimization step: 1802. Total energy = 9841.4675 kcal/mol (9832.2503 without restraints) Performing minimization step: 1803. Total energy = 9837.6498 kcal/mol (9828.4347 without restraints) Performing minimization step: 1804. Total energy = 9833.8353 kcal/mol (9824.6226 without restraints) Performing minimization step: 1805. Total energy = 9830.0243 kcal/mol (9820.8138 without restraints) Performing minimization step: 1806. Total energy = 9826.2171 kcal/mol (9817.0088 without restraints) Performing minimization step: 1807. Total energy = 9822.4134 kcal/mol (9813.2073 without restraints) Performing minimization step: 1808. Total energy = 9818.6126 kcal/mol (9809.4089 without restraints) Performing minimization step: 1809. Total energy = 9814.8150 kcal/mol (9805.6134 without restraints) Performing minimization step: 1810. Total energy = 9811.0207 kcal/mol (9801.8213 without restraints) Performing minimization step: 1811. Total energy = 9807.2297 kcal/mol (9798.0327 without restraints) Performing minimization step: 1812. Total energy = 9803.4421 kcal/mol (9794.2471 without restraints) Performing minimization step: 1813. Total energy = 9799.6578 kcal/mol (9790.4652 without restraints) Performing minimization step: 1814. Total energy = 9795.8767 kcal/mol (9786.6862 without restraints) Performing minimization step: 1815. Total energy = 9792.0988 kcal/mol (9782.9104 without restraints) Performing minimization step: 1816. Total energy = 9788.3242 kcal/mol (9779.1381 without restraints) Performing minimization step: 1817. Total energy = 9784.5525 kcal/mol (9775.3685 without restraints) Performing minimization step: 1818. Total energy = 9780.7840 kcal/mol (9771.6024 without restraints) Performing minimization step: 1819. Total energy = 9777.0192 kcal/mol (9767.8397 without restraints) Performing minimization step: 1820. Total energy = 9773.2574 kcal/mol (9764.0802 without restraints) Performing minimization step: 1821. Total energy = 9769.4994 kcal/mol (9760.3243 without restraints) Performing minimization step: 1822. Total energy = 9765.7441 kcal/mol (9756.5713 without restraints) Performing minimization step: 1823. Total energy = 9761.9928 kcal/mol (9752.8220 without restraints) Performing minimization step: 1824. Total energy = 9758.2439 kcal/mol (9749.0754 without restraints) Performing minimization step: 1825. Total energy = 9754.4984 kcal/mol (9745.3321 without restraints) Performing minimization step: 1826. Total energy = 9750.7561 kcal/mol (9741.5920 without restraints) Performing minimization step: 1827. Total energy = 9747.0169 kcal/mol (9737.8549 without restraints) Performing minimization step: 1828. Total energy = 9743.2810 kcal/mol (9734.1214 without restraints) Performing minimization step: 1829. Total energy = 9739.5484 kcal/mol (9730.3909 without restraints) Performing minimization step: 1830. Total energy = 9735.8189 kcal/mol (9726.6636 without restraints) Performing minimization step: 1831. Total energy = 9732.0925 kcal/mol (9722.9394 without restraints) Performing minimization step: 1832. Total energy = 9728.3693 kcal/mol (9719.2185 without restraints) Performing minimization step: 1833. Total energy = 9724.6497 kcal/mol (9715.5011 without restraints) Performing minimization step: 1834. Total energy = 9720.9329 kcal/mol (9711.7864 without restraints) Performing minimization step: 1835. Total energy = 9717.2193 kcal/mol (9708.0750 without restraints) Performing minimization step: 1836. Total energy = 9713.5085 kcal/mol (9704.3663 without restraints) Performing minimization step: 1837. Total energy = 9709.8010 kcal/mol (9700.6611 without restraints) Performing minimization step: 1838. Total energy = 9706.0967 kcal/mol (9696.9590 without restraints) Performing minimization step: 1839. Total energy = 9702.3956 kcal/mol (9693.2601 without restraints) Performing minimization step: 1840. Total energy = 9698.6971 kcal/mol (9689.5637 without restraints) Performing minimization step: 1841. Total energy = 9695.0020 kcal/mol (9685.8708 without restraints) Performing minimization step: 1842. Total energy = 9691.3099 kcal/mol (9682.1809 without restraints) Performing minimization step: 1843. Total energy = 9687.6213 kcal/mol (9678.4945 without restraints) Performing minimization step: 1844. Total energy = 9683.9356 kcal/mol (9674.8109 without restraints) Performing minimization step: 1845. Total energy = 9680.2528 kcal/mol (9671.1304 without restraints) Performing minimization step: 1846. Total energy = 9676.5734 kcal/mol (9667.4532 without restraints) Performing minimization step: 1847. Total energy = 9672.8967 kcal/mol (9663.7786 without restraints) Performing minimization step: 1848. Total energy = 9669.2235 kcal/mol (9660.1077 without restraints) Performing minimization step: 1849. Total energy = 9665.5539 kcal/mol (9656.4403 without restraints) Performing minimization step: 1850. Total energy = 9661.8872 kcal/mol (9652.7757 without restraints) Performing minimization step: 1851. Total energy = 9658.2235 kcal/mol (9649.1141 without restraints) Performing minimization step: 1852. Total energy = 9654.5626 kcal/mol (9645.4555 without restraints) Performing minimization step: 1853. Total energy = 9650.9048 kcal/mol (9641.7998 without restraints) Performing minimization step: 1854. Total energy = 9647.2499 kcal/mol (9638.1472 without restraints) Performing minimization step: 1855. Total energy = 9643.5983 kcal/mol (9634.4976 without restraints) Performing minimization step: 1856. Total energy = 9639.9493 kcal/mol (9630.8509 without restraints) Performing minimization step: 1857. Total energy = 9636.3035 kcal/mol (9627.2073 without restraints) Performing minimization step: 1858. Total energy = 9632.6610 kcal/mol (9623.5668 without restraints) Performing minimization step: 1859. Total energy = 9629.0213 kcal/mol (9619.9294 without restraints) Performing minimization step: 1860. Total energy = 9625.3844 kcal/mol (9616.2946 without restraints) Performing minimization step: 1861. Total energy = 9621.7505 kcal/mol (9612.6629 without restraints) Performing minimization step: 1862. Total energy = 9618.1197 kcal/mol (9609.0343 without restraints) Performing minimization step: 1863. Total energy = 9614.4913 kcal/mol (9605.4081 without restraints) Performing minimization step: 1864. Total energy = 9610.8666 kcal/mol (9601.7855 without restraints) Performing minimization step: 1865. Total energy = 9607.2453 kcal/mol (9598.1664 without restraints) Performing minimization step: 1866. Total energy = 9603.6260 kcal/mol (9594.5492 without restraints) Performing minimization step: 1867. Total energy = 9600.0099 kcal/mol (9590.9353 without restraints) Performing minimization step: 1868. Total energy = 9596.3965 kcal/mol (9587.3239 without restraints) Performing minimization step: 1869. Total energy = 9592.7863 kcal/mol (9583.7161 without restraints) Performing minimization step: 1870. Total energy = 9589.1793 kcal/mol (9580.1112 without restraints) Performing minimization step: 1871. Total energy = 9585.5754 kcal/mol (9576.5094 without restraints) Performing minimization step: 1872. Total energy = 9581.9740 kcal/mol (9572.9102 without restraints) Performing minimization step: 1873. Total energy = 9578.3761 kcal/mol (9569.3145 without restraints) Performing minimization step: 1874. Total energy = 9574.7808 kcal/mol (9565.7212 without restraints) Performing minimization step: 1875. Total energy = 9571.1884 kcal/mol (9562.1309 without restraints) Performing minimization step: 1876. Total energy = 9567.5982 kcal/mol (9558.5430 without restraints) Performing minimization step: 1877. Total energy = 9564.0114 kcal/mol (9554.9583 without restraints) Performing minimization step: 1878. Total energy = 9560.4270 kcal/mol (9551.3760 without restraints) Performing minimization step: 1879. Total energy = 9556.8459 kcal/mol (9547.7971 without restraints) Performing minimization step: 1880. Total energy = 9553.2679 kcal/mol (9544.2213 without restraints) Performing minimization step: 1881. Total energy = 9549.6926 kcal/mol (9540.6481 without restraints) Performing minimization step: 1882. Total energy = 9546.1202 kcal/mol (9537.0780 without restraints) Performing minimization step: 1883. Total energy = 9542.5504 kcal/mol (9533.5102 without restraints) Performing minimization step: 1884. Total energy = 9538.9837 kcal/mol (9529.9457 without restraints) Performing minimization step: 1885. Total energy = 9535.4199 kcal/mol (9526.3839 without restraints) Performing minimization step: 1886. Total energy = 9531.8590 kcal/mol (9522.8252 without restraints) Performing minimization step: 1887. Total energy = 9528.3006 kcal/mol (9519.2690 without restraints) Performing minimization step: 1888. Total energy = 9524.7452 kcal/mol (9515.7157 without restraints) Performing minimization step: 1889. Total energy = 9521.1926 kcal/mol (9512.1652 without restraints) Performing minimization step: 1890. Total energy = 9517.6432 kcal/mol (9508.6179 without restraints) Performing minimization step: 1891. Total energy = 9514.0962 kcal/mol (9505.0730 without restraints) Performing minimization step: 1892. Total energy = 9510.5518 kcal/mol (9501.5310 without restraints) Performing minimization step: 1893. Total energy = 9507.0110 kcal/mol (9497.9923 without restraints) Performing minimization step: 1894. Total energy = 9503.4726 kcal/mol (9494.4559 without restraints) Performing minimization step: 1895. Total energy = 9499.9369 kcal/mol (9490.9224 without restraints) Performing minimization step: 1896. Total energy = 9496.4040 kcal/mol (9487.3916 without restraints) Performing minimization step: 1897. Total energy = 9492.8738 kcal/mol (9483.8635 without restraints) Performing minimization step: 1898. Total energy = 9489.3466 kcal/mol (9480.3384 without restraints) Performing minimization step: 1899. Total energy = 9485.8222 kcal/mol (9476.8161 without restraints) Performing minimization step: 1900. Total energy = 9482.3001 kcal/mol (9473.2963 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 9478.7813 kcal/mol (9469.7795 without restraints) Performing minimization step: 1902. Total energy = 9475.2650 kcal/mol (9466.2654 without restraints) Performing minimization step: 1903. Total energy = 9471.7511 kcal/mol (9462.7534 without restraints) Performing minimization step: 1904. Total energy = 9468.2402 kcal/mol (9459.2447 without restraints) Performing minimization step: 1905. Total energy = 9464.7320 kcal/mol (9455.7387 without restraints) Performing minimization step: 1906. Total energy = 9461.2269 kcal/mol (9452.2357 without restraints) Performing minimization step: 1907. Total energy = 9457.7243 kcal/mol (9448.7353 without restraints) Performing minimization step: 1908. Total energy = 9454.2249 kcal/mol (9445.2381 without restraints) Performing minimization step: 1909. Total energy = 9450.7280 kcal/mol (9441.7432 without restraints) Performing minimization step: 1910. Total energy = 9447.2334 kcal/mol (9438.2506 without restraints) Performing minimization step: 1911. Total energy = 9443.7415 kcal/mol (9434.7609 without restraints) Performing minimization step: 1912. Total energy = 9440.2522 kcal/mol (9431.2737 without restraints) Performing minimization step: 1913. Total energy = 9436.7657 kcal/mol (9427.7893 without restraints) Performing minimization step: 1914. Total energy = 9433.2820 kcal/mol (9424.3077 without restraints) Performing minimization step: 1915. Total energy = 9429.8008 kcal/mol (9420.8286 without restraints) Performing minimization step: 1916. Total energy = 9426.3224 kcal/mol (9417.3524 without restraints) Performing minimization step: 1917. Total energy = 9422.8464 kcal/mol (9413.8785 without restraints) Performing minimization step: 1918. Total energy = 9419.3734 kcal/mol (9410.4075 without restraints) Performing minimization step: 1919. Total energy = 9415.9031 kcal/mol (9406.9393 without restraints) Performing minimization step: 1920. Total energy = 9412.4353 kcal/mol (9403.4737 without restraints) Performing minimization step: 1921. Total energy = 9408.9705 kcal/mol (9400.0109 without restraints) Performing minimization step: 1922. Total energy = 9405.5078 kcal/mol (9396.5504 without restraints) Performing minimization step: 1923. Total energy = 9402.0485 kcal/mol (9393.0931 without restraints) Performing minimization step: 1924. Total energy = 9398.5910 kcal/mol (9389.6378 without restraints) Performing minimization step: 1925. Total energy = 9395.1359 kcal/mol (9386.1847 without restraints) Performing minimization step: 1926. Total energy = 9391.6838 kcal/mol (9382.7349 without restraints) Performing minimization step: 1927. Total energy = 9388.2345 kcal/mol (9379.2877 without restraints) Performing minimization step: 1928. Total energy = 9384.7874 kcal/mol (9375.8426 without restraints) Performing minimization step: 1929. Total energy = 9381.3434 kcal/mol (9372.4007 without restraints) Performing minimization step: 1930. Total energy = 9377.9012 kcal/mol (9368.9605 without restraints) Performing minimization step: 1931. Total energy = 9374.4620 kcal/mol (9365.5234 without restraints) Performing minimization step: 1932. Total energy = 9371.0257 kcal/mol (9362.0894 without restraints) Performing minimization step: 1933. Total energy = 9367.5917 kcal/mol (9358.6573 without restraints) Performing minimization step: 1934. Total energy = 9364.1600 kcal/mol (9355.2277 without restraints) Performing minimization step: 1935. Total energy = 9360.7313 kcal/mol (9351.8010 without restraints) Performing minimization step: 1936. Total energy = 9357.3049 kcal/mol (9348.3768 without restraints) Performing minimization step: 1937. Total energy = 9353.8814 kcal/mol (9344.9554 without restraints) Performing minimization step: 1938. Total energy = 9350.4604 kcal/mol (9341.5364 without restraints) Performing minimization step: 1939. Total energy = 9347.0416 kcal/mol (9338.1197 without restraints) Performing minimization step: 1940. Total energy = 9343.6251 kcal/mol (9334.7053 without restraints) Performing minimization step: 1941. Total energy = 9340.2115 kcal/mol (9331.2937 without restraints) Performing minimization step: 1942. Total energy = 9336.8003 kcal/mol (9327.8846 without restraints) Performing minimization step: 1943. Total energy = 9333.3919 kcal/mol (9324.4783 without restraints) Performing minimization step: 1944. Total energy = 9329.9858 kcal/mol (9321.0743 without restraints) Performing minimization step: 1945. Total energy = 9326.5821 kcal/mol (9317.6727 without restraints) Performing minimization step: 1946. Total energy = 9323.1811 kcal/mol (9314.2741 without restraints) Performing minimization step: 1947. Total energy = 9319.7828 kcal/mol (9310.8775 without restraints) Performing minimization step: 1948. Total energy = 9316.3872 kcal/mol (9307.4839 without restraints) Performing minimization step: 1949. Total energy = 9312.9938 kcal/mol (9304.0927 without restraints) Performing minimization step: 1950. Total energy = 9309.6027 kcal/mol (9300.7036 without restraints) Performing minimization step: 1951. Total energy = 9306.2139 kcal/mol (9297.3169 without restraints) Performing minimization step: 1952. Total energy = 9302.8274 kcal/mol (9293.9325 without restraints) Performing minimization step: 1953. Total energy = 9299.4435 kcal/mol (9290.5507 without restraints) Performing minimization step: 1954. Total energy = 9296.0620 kcal/mol (9287.1712 without restraints) Performing minimization step: 1955. Total energy = 9292.6837 kcal/mol (9283.7948 without restraints) Performing minimization step: 1956. Total energy = 9289.3071 kcal/mol (9280.4205 without restraints) Performing minimization step: 1957. Total energy = 9285.9333 kcal/mol (9277.0487 without restraints) Performing minimization step: 1958. Total energy = 9282.5619 kcal/mol (9273.6792 without restraints) Performing minimization step: 1959. Total energy = 9279.1935 kcal/mol (9270.3132 without restraints) Performing minimization step: 1960. Total energy = 9275.8271 kcal/mol (9266.9487 without restraints) Performing minimization step: 1961. Total energy = 9272.4628 kcal/mol (9263.5864 without restraints) Performing minimization step: 1962. Total energy = 9269.1013 kcal/mol (9260.2270 without restraints) Performing minimization step: 1963. Total energy = 9265.7418 kcal/mol (9256.8695 without restraints) Performing minimization step: 1964. Total energy = 9262.3839 kcal/mol (9253.5137 without restraints) Performing minimization step: 1965. Total energy = 9259.0293 kcal/mol (9250.1611 without restraints) Performing minimization step: 1966. Total energy = 9255.6772 kcal/mol (9246.8111 without restraints) Performing minimization step: 1967. Total energy = 9252.3275 kcal/mol (9243.4636 without restraints) Performing minimization step: 1968. Total energy = 9248.9802 kcal/mol (9240.1179 without restraints) Performing minimization step: 1969. Total energy = 9245.6349 kcal/mol (9236.7750 without restraints) Performing minimization step: 1970. Total energy = 9242.2924 kcal/mol (9233.4345 without restraints) Performing minimization step: 1971. Total energy = 9238.9516 kcal/mol (9230.0957 without restraints) Performing minimization step: 1972. Total energy = 9235.6133 kcal/mol (9226.7593 without restraints) Performing minimization step: 1973. Total energy = 9232.2775 kcal/mol (9223.4257 without restraints) Performing minimization step: 1974. Total energy = 9228.9444 kcal/mol (9220.0947 without restraints) Performing minimization step: 1975. Total energy = 9225.6134 kcal/mol (9216.7657 without restraints) Performing minimization step: 1976. Total energy = 9222.2849 kcal/mol (9213.4393 without restraints) Performing minimization step: 1977. Total energy = 9218.9586 kcal/mol (9210.1150 without restraints) Performing minimization step: 1978. Total energy = 9215.6349 kcal/mol (9206.7935 without restraints) Performing minimization step: 1979. Total energy = 9212.3139 kcal/mol (9203.4744 without restraints) Performing minimization step: 1980. Total energy = 9208.9952 kcal/mol (9200.1578 without restraints) Performing minimization step: 1981. Total energy = 9205.6782 kcal/mol (9196.8428 without restraints) Performing minimization step: 1982. Total energy = 9202.3638 kcal/mol (9193.5303 without restraints) Performing minimization step: 1983. Total energy = 9199.0512 kcal/mol (9190.2197 without restraints) Performing minimization step: 1984. Total energy = 9195.7410 kcal/mol (9186.9116 without restraints) Performing minimization step: 1985. Total energy = 9192.4328 kcal/mol (9183.6054 without restraints) Performing minimization step: 1986. Total energy = 9189.1272 kcal/mol (9180.3019 without restraints) Performing minimization step: 1987. Total energy = 9185.8246 kcal/mol (9177.0016 without restraints) Performing minimization step: 1988. Total energy = 9182.5238 kcal/mol (9173.7024 without restraints) Performing minimization step: 1989. Total energy = 9179.2249 kcal/mol (9170.4058 without restraints) Performing minimization step: 1990. Total energy = 9175.9289 kcal/mol (9167.1117 without restraints) Performing minimization step: 1991. Total energy = 9172.6350 kcal/mol (9163.8198 without restraints) Performing minimization step: 1992. Total energy = 9169.3431 kcal/mol (9160.5300 without restraints) Performing minimization step: 1993. Total energy = 9166.0535 kcal/mol (9157.2424 without restraints) Performing minimization step: 1994. Total energy = 9162.7663 kcal/mol (9153.9573 without restraints) Performing minimization step: 1995. Total energy = 9159.4817 kcal/mol (9150.6745 without restraints) Performing minimization step: 1996. Total energy = 9156.1989 kcal/mol (9147.3938 without restraints) Performing minimization step: 1997. Total energy = 9152.9183 kcal/mol (9144.1152 without restraints) Performing minimization step: 1998. Total energy = 9149.6396 kcal/mol (9140.8385 without restraints) Performing minimization step: 1999. Total energy = 9146.3634 kcal/mol (9137.5643 without restraints) Performing minimization step: 2000. Total energy = 9143.0899 kcal/mol (9134.2929 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 9139.8182 kcal/mol (9131.0231 without restraints) Performing minimization step: 2002. Total energy = 9136.5487 kcal/mol (9127.7557 without restraints) Performing minimization step: 2003. Total energy = 9133.2813 kcal/mol (9124.4902 without restraints) Performing minimization step: 2004. Total energy = 9130.0158 kcal/mol (9121.2268 without restraints) Performing minimization step: 2005. Total energy = 9126.7528 kcal/mol (9117.9658 without restraints) Performing minimization step: 2006. Total energy = 9123.4922 kcal/mol (9114.7072 without restraints) Performing minimization step: 2007. Total energy = 9120.2337 kcal/mol (9111.4507 without restraints) Performing minimization step: 2008. Total energy = 9116.9780 kcal/mol (9108.1970 without restraints) Performing minimization step: 2009. Total energy = 9113.7237 kcal/mol (9104.9447 without restraints) Performing minimization step: 2010. Total energy = 9110.4716 kcal/mol (9101.6946 without restraints) Performing minimization step: 2011. Total energy = 9107.2220 kcal/mol (9098.4470 without restraints) Performing minimization step: 2012. Total energy = 9103.9742 kcal/mol (9095.2012 without restraints) Performing minimization step: 2013. Total energy = 9100.7286 kcal/mol (9091.9577 without restraints) Performing minimization step: 2014. Total energy = 9097.4851 kcal/mol (9088.7160 without restraints) Performing minimization step: 2015. Total energy = 9094.2439 kcal/mol (9085.4769 without restraints) Performing minimization step: 2016. Total energy = 9091.0047 kcal/mol (9082.2396 without restraints) Performing minimization step: 2017. Total energy = 9087.7677 kcal/mol (9079.0046 without restraints) Performing minimization step: 2018. Total energy = 9084.5326 kcal/mol (9075.7716 without restraints) Performing minimization step: 2019. Total energy = 9081.2997 kcal/mol (9072.5406 without restraints) Performing minimization step: 2020. Total energy = 9078.0689 kcal/mol (9069.3118 without restraints) Performing minimization step: 2021. Total energy = 9074.8403 kcal/mol (9066.0850 without restraints) Performing minimization step: 2022. Total energy = 9071.6134 kcal/mol (9062.8601 without restraints) Performing minimization step: 2023. Total energy = 9068.3888 kcal/mol (9059.6377 without restraints) Performing minimization step: 2024. Total energy = 9065.1667 kcal/mol (9056.4176 without restraints) Performing minimization step: 2025. Total energy = 9061.9468 kcal/mol (9053.1996 without restraints) Performing minimization step: 2026. Total energy = 9058.7284 kcal/mol (9049.9832 without restraints) Performing minimization step: 2027. Total energy = 9055.5123 kcal/mol (9046.7691 without restraints) Performing minimization step: 2028. Total energy = 9052.2982 kcal/mol (9043.5569 without restraints) Performing minimization step: 2029. Total energy = 9049.0865 kcal/mol (9040.3474 without restraints) Performing minimization step: 2030. Total energy = 9045.8768 kcal/mol (9037.1395 without restraints) Performing minimization step: 2031. Total energy = 9042.6688 kcal/mol (9033.9335 without restraints) Performing minimization step: 2032. Total energy = 9039.4630 kcal/mol (9030.7296 without restraints) Performing minimization step: 2033. Total energy = 9036.2592 kcal/mol (9027.5278 without restraints) Performing minimization step: 2034. Total energy = 9033.0575 kcal/mol (9024.3281 without restraints) Performing minimization step: 2035. Total energy = 9029.8582 kcal/mol (9021.1308 without restraints) Performing minimization step: 2036. Total energy = 9026.6607 kcal/mol (9017.9354 without restraints) Performing minimization step: 2037. Total energy = 9023.4656 kcal/mol (9014.7421 without restraints) Performing minimization step: 2038. Total energy = 9020.2722 kcal/mol (9011.5508 without restraints) Performing minimization step: 2039. Total energy = 9017.0807 kcal/mol (9008.3611 without restraints) Performing minimization step: 2040. Total energy = 9013.8911 kcal/mol (9005.1735 without restraints) Performing minimization step: 2041. Total energy = 9010.7034 kcal/mol (9001.9878 without restraints) Performing minimization step: 2042. Total energy = 9007.5180 kcal/mol (8998.8043 without restraints) Performing minimization step: 2043. Total energy = 9004.3345 kcal/mol (8995.6228 without restraints) Performing minimization step: 2044. Total energy = 9001.1531 kcal/mol (8992.4434 without restraints) Performing minimization step: 2045. Total energy = 8997.9737 kcal/mol (8989.2659 without restraints) Performing minimization step: 2046. Total energy = 8994.7963 kcal/mol (8986.0905 without restraints) Performing minimization step: 2047. Total energy = 8991.6211 kcal/mol (8982.9172 without restraints) Performing minimization step: 2048. Total energy = 8988.4474 kcal/mol (8979.7454 without restraints) Performing minimization step: 2049. Total energy = 8985.2756 kcal/mol (8976.5756 without restraints) Performing minimization step: 2050. Total energy = 8982.1064 kcal/mol (8973.4083 without restraints) Performing minimization step: 2051. Total energy = 8978.9391 kcal/mol (8970.2430 without restraints) Performing minimization step: 2052. Total energy = 8975.7736 kcal/mol (8967.0795 without restraints) Performing minimization step: 2053. Total energy = 8972.6101 kcal/mol (8963.9179 without restraints) Performing minimization step: 2054. Total energy = 8969.4483 kcal/mol (8960.7580 without restraints) Performing minimization step: 2055. Total energy = 8966.2887 kcal/mol (8957.6004 without restraints) Performing minimization step: 2056. Total energy = 8963.1311 kcal/mol (8954.4448 without restraints) Performing minimization step: 2057. Total energy = 8959.9753 kcal/mol (8951.2909 without restraints) Performing minimization step: 2058. Total energy = 8956.8211 kcal/mol (8948.1386 without restraints) Performing minimization step: 2059. Total energy = 8953.6694 kcal/mol (8944.9889 without restraints) Performing minimization step: 2060. Total energy = 8950.5194 kcal/mol (8941.8407 without restraints) Performing minimization step: 2061. Total energy = 8947.3712 kcal/mol (8938.6944 without restraints) Performing minimization step: 2062. Total energy = 8944.2250 kcal/mol (8935.5503 without restraints) Performing minimization step: 2063. Total energy = 8941.0812 kcal/mol (8932.4084 without restraints) Performing minimization step: 2064. Total energy = 8937.9390 kcal/mol (8929.2681 without restraints) Performing minimization step: 2065. Total energy = 8934.7991 kcal/mol (8926.1302 without restraints) Performing minimization step: 2066. Total energy = 8931.6604 kcal/mol (8922.9934 without restraints) Performing minimization step: 2067. Total energy = 8928.5238 kcal/mol (8919.8588 without restraints) Performing minimization step: 2068. Total energy = 8925.3893 kcal/mol (8916.7261 without restraints) Performing minimization step: 2069. Total energy = 8922.2565 kcal/mol (8913.5953 without restraints) Performing minimization step: 2070. Total energy = 8919.1254 kcal/mol (8910.4661 without restraints) Performing minimization step: 2071. Total energy = 8915.9966 kcal/mol (8907.3392 without restraints) Performing minimization step: 2072. Total energy = 8912.8695 kcal/mol (8904.2141 without restraints) Performing minimization step: 2073. Total energy = 8909.7443 kcal/mol (8901.0908 without restraints) Performing minimization step: 2074. Total energy = 8906.6209 kcal/mol (8897.9693 without restraints) Performing minimization step: 2075. Total energy = 8903.4993 kcal/mol (8894.8497 without restraints) Performing minimization step: 2076. Total energy = 8900.3795 kcal/mol (8891.7318 without restraints) Performing minimization step: 2077. Total energy = 8897.2620 kcal/mol (8888.6162 without restraints) Performing minimization step: 2078. Total energy = 8894.1458 kcal/mol (8885.5019 without restraints) Performing minimization step: 2079. Total energy = 8891.0317 kcal/mol (8882.3897 without restraints) Performing minimization step: 2080. Total energy = 8887.9193 kcal/mol (8879.2792 without restraints) Performing minimization step: 2081. Total energy = 8884.8092 kcal/mol (8876.1710 without restraints) Performing minimization step: 2082. Total energy = 8881.7006 kcal/mol (8873.0644 without restraints) Performing minimization step: 2083. Total energy = 8878.5943 kcal/mol (8869.9600 without restraints) Performing minimization step: 2084. Total energy = 8875.4893 kcal/mol (8866.8568 without restraints) Performing minimization step: 2085. Total energy = 8872.3870 kcal/mol (8863.7563 without restraints) Performing minimization step: 2086. Total energy = 8869.2854 kcal/mol (8860.6568 without restraints) Performing minimization step: 2087. Total energy = 8866.1863 kcal/mol (8857.5595 without restraints) Performing minimization step: 2088. Total energy = 8863.0888 kcal/mol (8854.4640 without restraints) Performing minimization step: 2089. Total energy = 8859.9932 kcal/mol (8851.3703 without restraints) Performing minimization step: 2090. Total energy = 8856.8993 kcal/mol (8848.2784 without restraints) Performing minimization step: 2091. Total energy = 8853.8071 kcal/mol (8845.1880 without restraints) Performing minimization step: 2092. Total energy = 8850.7170 kcal/mol (8842.0998 without restraints) Performing minimization step: 2093. Total energy = 8847.6286 kcal/mol (8839.0132 without restraints) Performing minimization step: 2094. Total energy = 8844.5417 kcal/mol (8835.9286 without restraints) Performing minimization step: 2095. Total energy = 8841.4571 kcal/mol (8832.8456 without restraints) Performing minimization step: 2096. Total energy = 8838.3739 kcal/mol (8829.7642 without restraints) Performing minimization step: 2097. Total energy = 8835.2923 kcal/mol (8826.6846 without restraints) Performing minimization step: 2098. Total energy = 8832.2125 kcal/mol (8823.6065 without restraints) Performing minimization step: 2099. Total energy = 8829.1346 kcal/mol (8820.5306 without restraints) Performing minimization step: 2100. Total energy = 8826.0586 kcal/mol (8817.4565 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 8822.9839 kcal/mol (8814.3837 without restraints) Performing minimization step: 2102. Total energy = 8819.9112 kcal/mol (8811.3129 without restraints) Performing minimization step: 2103. Total energy = 8816.8400 kcal/mol (8808.2436 without restraints) Performing minimization step: 2104. Total energy = 8813.7714 kcal/mol (8805.1769 without restraints) Performing minimization step: 2105. Total energy = 8810.7038 kcal/mol (8802.1112 without restraints) Performing minimization step: 2106. Total energy = 8807.6382 kcal/mol (8799.0474 without restraints) Performing minimization step: 2107. Total energy = 8804.5744 kcal/mol (8795.9857 without restraints) Performing minimization step: 2108. Total energy = 8801.5122 kcal/mol (8792.9251 without restraints) Performing minimization step: 2109. Total energy = 8798.4518 kcal/mol (8789.8668 without restraints) Performing minimization step: 2110. Total energy = 8795.3929 kcal/mol (8786.8096 without restraints) Performing minimization step: 2111. Total energy = 8792.3355 kcal/mol (8783.7541 without restraints) Performing minimization step: 2112. Total energy = 8789.2805 kcal/mol (8780.7010 without restraints) Performing minimization step: 2113. Total energy = 8786.2268 kcal/mol (8777.6492 without restraints) Performing minimization step: 2114. Total energy = 8783.1748 kcal/mol (8774.5990 without restraints) Performing minimization step: 2115. Total energy = 8780.1245 kcal/mol (8771.5506 without restraints) Performing minimization step: 2116. Total energy = 8777.0758 kcal/mol (8768.5038 without restraints) Performing minimization step: 2117. Total energy = 8774.0289 kcal/mol (8765.4587 without restraints) Performing minimization step: 2118. Total energy = 8770.9841 kcal/mol (8762.4158 without restraints) Performing minimization step: 2119. Total energy = 8767.9406 kcal/mol (8759.3742 without restraints) Performing minimization step: 2120. Total energy = 8764.8987 kcal/mol (8756.3341 without restraints) Performing minimization step: 2121. Total energy = 8761.8585 kcal/mol (8753.2958 without restraints) Performing minimization step: 2122. Total energy = 8758.8199 kcal/mol (8750.2589 without restraints) Performing minimization step: 2123. Total energy = 8755.7828 kcal/mol (8747.2238 without restraints) Performing minimization step: 2124. Total energy = 8752.7478 kcal/mol (8744.1907 without restraints) Performing minimization step: 2125. Total energy = 8749.7145 kcal/mol (8741.1592 without restraints) Performing minimization step: 2126. Total energy = 8746.6827 kcal/mol (8738.1293 without restraints) Performing minimization step: 2127. Total energy = 8743.6523 kcal/mol (8735.1007 without restraints) Performing minimization step: 2128. Total energy = 8740.6238 kcal/mol (8732.0742 without restraints) Performing minimization step: 2129. Total energy = 8737.5971 kcal/mol (8729.0493 without restraints) Performing minimization step: 2130. Total energy = 8734.5715 kcal/mol (8726.0255 without restraints) Performing minimization step: 2131. Total energy = 8731.5482 kcal/mol (8723.0040 without restraints) Performing minimization step: 2132. Total energy = 8728.5262 kcal/mol (8719.9839 without restraints) Performing minimization step: 2133. Total energy = 8725.5058 kcal/mol (8716.9654 without restraints) Performing minimization step: 2134. Total energy = 8722.4875 kcal/mol (8713.9489 without restraints) Performing minimization step: 2135. Total energy = 8719.4705 kcal/mol (8710.9337 without restraints) Performing minimization step: 2136. Total energy = 8716.4549 kcal/mol (8707.9200 without restraints) Performing minimization step: 2137. Total energy = 8713.4413 kcal/mol (8704.9082 without restraints) Performing minimization step: 2138. Total energy = 8710.4294 kcal/mol (8701.8982 without restraints) Performing minimization step: 2139. Total energy = 8707.4188 kcal/mol (8698.8894 without restraints) Performing minimization step: 2140. Total energy = 8704.4099 kcal/mol (8695.8824 without restraints) Performing minimization step: 2141. Total energy = 8701.4022 kcal/mol (8692.8764 without restraints) Performing minimization step: 2142. Total energy = 8698.3965 kcal/mol (8689.8726 without restraints) Performing minimization step: 2143. Total energy = 8695.3922 kcal/mol (8686.8701 without restraints) Performing minimization step: 2144. Total energy = 8692.3896 kcal/mol (8683.8694 without restraints) Performing minimization step: 2145. Total energy = 8689.3885 kcal/mol (8680.8701 without restraints) Performing minimization step: 2146. Total energy = 8686.3890 kcal/mol (8677.8725 without restraints) Performing minimization step: 2147. Total energy = 8683.3913 kcal/mol (8674.8766 without restraints) Performing minimization step: 2148. Total energy = 8680.3951 kcal/mol (8671.8822 without restraints) Performing minimization step: 2149. Total energy = 8677.4006 kcal/mol (8668.8895 without restraints) Performing minimization step: 2150. Total energy = 8674.4071 kcal/mol (8665.8979 without restraints) Performing minimization step: 2151. Total energy = 8671.4156 kcal/mol (8662.9082 without restraints) Performing minimization step: 2152. Total energy = 8668.4258 kcal/mol (8659.9202 without restraints) Performing minimization step: 2153. Total energy = 8665.4376 kcal/mol (8656.9340 without restraints) Performing minimization step: 2154. Total energy = 8662.4508 kcal/mol (8653.9489 without restraints) Performing minimization step: 2155. Total energy = 8659.4654 kcal/mol (8650.9653 without restraints) Performing minimization step: 2156. Total energy = 8656.4818 kcal/mol (8647.9835 without restraints) Performing minimization step: 2157. Total energy = 8653.4995 kcal/mol (8645.0030 without restraints) Performing minimization step: 2158. Total energy = 8650.5187 kcal/mol (8642.0240 without restraints) Performing minimization step: 2159. Total energy = 8647.5396 kcal/mol (8639.0468 without restraints) Performing minimization step: 2160. Total energy = 8644.5617 kcal/mol (8636.0707 without restraints) Performing minimization step: 2161. Total energy = 8641.5856 kcal/mol (8633.0963 without restraints) Performing minimization step: 2162. Total energy = 8638.6109 kcal/mol (8630.1235 without restraints) Performing minimization step: 2163. Total energy = 8635.6378 kcal/mol (8627.1522 without restraints) Performing minimization step: 2164. Total energy = 8632.6664 kcal/mol (8624.1826 without restraints) Performing minimization step: 2165. Total energy = 8629.6963 kcal/mol (8621.2143 without restraints) Performing minimization step: 2166. Total energy = 8626.7275 kcal/mol (8618.2473 without restraints) Performing minimization step: 2167. Total energy = 8623.7605 kcal/mol (8615.2820 without restraints) Performing minimization step: 2168. Total energy = 8620.7951 kcal/mol (8612.3185 without restraints) Performing minimization step: 2169. Total energy = 8617.8313 kcal/mol (8609.3565 without restraints) Performing minimization step: 2170. Total energy = 8614.8686 kcal/mol (8606.3956 without restraints) Performing minimization step: 2171. Total energy = 8611.9072 kcal/mol (8603.4360 without restraints) Performing minimization step: 2172. Total energy = 8608.9479 kcal/mol (8600.4786 without restraints) Performing minimization step: 2173. Total energy = 8605.9899 kcal/mol (8597.5223 without restraints) Performing minimization step: 2174. Total energy = 8603.0335 kcal/mol (8594.5677 without restraints) Performing minimization step: 2175. Total energy = 8600.0787 kcal/mol (8591.6148 without restraints) Performing minimization step: 2176. Total energy = 8597.1255 kcal/mol (8588.6633 without restraints) Performing minimization step: 2177. Total energy = 8594.1736 kcal/mol (8585.7132 without restraints) Performing minimization step: 2178. Total energy = 8591.2235 kcal/mol (8582.7648 without restraints) Performing minimization step: 2179. Total energy = 8588.2746 kcal/mol (8579.8178 without restraints) Performing minimization step: 2180. Total energy = 8585.3265 kcal/mol (8576.8714 without restraints) Performing minimization step: 2181. Total energy = 8582.3801 kcal/mol (8573.9268 without restraints) Performing minimization step: 2182. Total energy = 8579.4355 kcal/mol (8570.9841 without restraints) Performing minimization step: 2183. Total energy = 8576.4924 kcal/mol (8568.0427 without restraints) Performing minimization step: 2184. Total energy = 8573.5506 kcal/mol (8565.1027 without restraints) Performing minimization step: 2185. Total energy = 8570.6100 kcal/mol (8562.1638 without restraints) Performing minimization step: 2186. Total energy = 8567.6710 kcal/mol (8559.2267 without restraints) Performing minimization step: 2187. Total energy = 8564.7337 kcal/mol (8556.2912 without restraints) Performing minimization step: 2188. Total energy = 8561.7979 kcal/mol (8553.3571 without restraints) Performing minimization step: 2189. Total energy = 8558.8630 kcal/mol (8550.4240 without restraints) Performing minimization step: 2190. Total energy = 8555.9300 kcal/mol (8547.4928 without restraints) Performing minimization step: 2191. Total energy = 8552.9985 kcal/mol (8544.5631 without restraints) Performing minimization step: 2192. Total energy = 8550.0689 kcal/mol (8541.6353 without restraints) Performing minimization step: 2193. Total energy = 8547.1400 kcal/mol (8538.7081 without restraints) Performing minimization step: 2194. Total energy = 8544.2125 kcal/mol (8535.7824 without restraints) Performing minimization step: 2195. Total energy = 8541.2865 kcal/mol (8532.8582 without restraints) Performing minimization step: 2196. Total energy = 8538.3619 kcal/mol (8529.9353 without restraints) Performing minimization step: 2197. Total energy = 8535.4387 kcal/mol (8527.0140 without restraints) Performing minimization step: 2198. Total energy = 8532.5169 kcal/mol (8524.0939 without restraints) Performing minimization step: 2199. Total energy = 8529.5964 kcal/mol (8521.1752 without restraints) Performing minimization step: 2200. Total energy = 8526.6776 kcal/mol (8518.2581 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 8523.7606 kcal/mol (8515.3429 without restraints) Performing minimization step: 2202. Total energy = 8520.8442 kcal/mol (8512.4282 without restraints) Performing minimization step: 2203. Total energy = 8517.9295 kcal/mol (8509.5153 without restraints) Performing minimization step: 2204. Total energy = 8515.0159 kcal/mol (8506.6035 without restraints) Performing minimization step: 2205. Total energy = 8512.1037 kcal/mol (8503.6930 without restraints) Performing minimization step: 2206. Total energy = 8509.1931 kcal/mol (8500.7841 without restraints) Performing minimization step: 2207. Total energy = 8506.2835 kcal/mol (8497.8764 without restraints) Performing minimization step: 2208. Total energy = 8503.3756 kcal/mol (8494.9702 without restraints) Performing minimization step: 2209. Total energy = 8500.4690 kcal/mol (8492.0654 without restraints) Performing minimization step: 2210. Total energy = 8497.5632 kcal/mol (8489.1613 without restraints) Performing minimization step: 2211. Total energy = 8494.6594 kcal/mol (8486.2592 without restraints) Performing minimization step: 2212. Total energy = 8491.7573 kcal/mol (8483.3589 without restraints) Performing minimization step: 2213. Total energy = 8488.8563 kcal/mol (8480.4596 without restraints) Performing minimization step: 2214. Total energy = 8485.9566 kcal/mol (8477.5616 without restraints) Performing minimization step: 2215. Total energy = 8483.0582 kcal/mol (8474.6651 without restraints) Performing minimization step: 2216. Total energy = 8480.1612 kcal/mol (8471.7698 without restraints) Performing minimization step: 2217. Total energy = 8477.2652 kcal/mol (8468.8755 without restraints) Performing minimization step: 2218. Total energy = 8474.3711 kcal/mol (8465.9832 without restraints) Performing minimization step: 2219. Total energy = 8471.4782 kcal/mol (8463.0921 without restraints) Performing minimization step: 2220. Total energy = 8468.5866 kcal/mol (8460.2022 without restraints) Performing minimization step: 2221. Total energy = 8465.6964 kcal/mol (8457.3137 without restraints) Performing minimization step: 2222. Total energy = 8462.8074 kcal/mol (8454.4264 without restraints) Performing minimization step: 2223. Total energy = 8459.9202 kcal/mol (8451.5409 without restraints) Performing minimization step: 2224. Total energy = 8457.0341 kcal/mol (8448.6566 without restraints) Performing minimization step: 2225. Total energy = 8454.1493 kcal/mol (8445.7736 without restraints) Performing minimization step: 2226. Total energy = 8451.2662 kcal/mol (8442.8921 without restraints) Performing minimization step: 2227. Total energy = 8448.3837 kcal/mol (8440.0113 without restraints) Performing minimization step: 2228. Total energy = 8445.5028 kcal/mol (8437.1323 without restraints) Performing minimization step: 2229. Total energy = 8442.6229 kcal/mol (8434.2541 without restraints) Performing minimization step: 2230. Total energy = 8439.7446 kcal/mol (8431.3775 without restraints) Performing minimization step: 2231. Total energy = 8436.8676 kcal/mol (8428.5022 without restraints) Performing minimization step: 2232. Total energy = 8433.9919 kcal/mol (8425.6283 without restraints) Performing minimization step: 2233. Total energy = 8431.1175 kcal/mol (8422.7556 without restraints) Performing minimization step: 2234. Total energy = 8428.2448 kcal/mol (8419.8845 without restraints) Performing minimization step: 2235. Total energy = 8425.3737 kcal/mol (8417.0152 without restraints) Performing minimization step: 2236. Total energy = 8422.5032 kcal/mol (8414.1465 without restraints) Performing minimization step: 2237. Total energy = 8419.6342 kcal/mol (8411.2792 without restraints) Performing minimization step: 2238. Total energy = 8416.7664 kcal/mol (8408.4131 without restraints) Performing minimization step: 2239. Total energy = 8413.8998 kcal/mol (8405.5482 without restraints) Performing minimization step: 2240. Total energy = 8411.0344 kcal/mol (8402.6847 without restraints) Performing minimization step: 2241. Total energy = 8408.1709 kcal/mol (8399.8227 without restraints) Performing minimization step: 2242. Total energy = 8405.3083 kcal/mol (8396.9619 without restraints) Performing minimization step: 2243. Total energy = 8402.4469 kcal/mol (8394.1022 without restraints) Performing minimization step: 2244. Total energy = 8399.5868 kcal/mol (8391.2439 without restraints) Performing minimization step: 2245. Total energy = 8396.7278 kcal/mol (8388.3864 without restraints) Performing minimization step: 2246. Total energy = 8393.8704 kcal/mol (8385.5307 without restraints) Performing minimization step: 2247. Total energy = 8391.0143 kcal/mol (8382.6764 without restraints) Performing minimization step: 2248. Total energy = 8388.1592 kcal/mol (8379.8230 without restraints) Performing minimization step: 2249. Total energy = 8385.3057 kcal/mol (8376.9712 without restraints) Performing minimization step: 2250. Total energy = 8382.4531 kcal/mol (8374.1203 without restraints) Performing minimization step: 2251. Total energy = 8379.6015 kcal/mol (8371.2704 without restraints) Performing minimization step: 2252. Total energy = 8376.7514 kcal/mol (8368.4221 without restraints) Performing minimization step: 2253. Total energy = 8373.9027 kcal/mol (8365.5750 without restraints) Performing minimization step: 2254. Total energy = 8371.0551 kcal/mol (8362.7292 without restraints) Performing minimization step: 2255. Total energy = 8368.2089 kcal/mol (8359.8846 without restraints) Performing minimization step: 2256. Total energy = 8365.3640 kcal/mol (8357.0414 without restraints) Performing minimization step: 2257. Total energy = 8362.5202 kcal/mol (8354.1993 without restraints) Performing minimization step: 2258. Total energy = 8359.6784 kcal/mol (8351.3593 without restraints) Performing minimization step: 2259. Total energy = 8356.8372 kcal/mol (8348.5197 without restraints) Performing minimization step: 2260. Total energy = 8353.9975 kcal/mol (8345.6818 without restraints) Performing minimization step: 2261. Total energy = 8351.1588 kcal/mol (8342.8446 without restraints) Performing minimization step: 2262. Total energy = 8348.3212 kcal/mol (8340.0087 without restraints) Performing minimization step: 2263. Total energy = 8345.4849 kcal/mol (8337.1741 without restraints) Performing minimization step: 2264. Total energy = 8342.6497 kcal/mol (8334.3406 without restraints) Performing minimization step: 2265. Total energy = 8339.8159 kcal/mol (8331.5086 without restraints) Performing minimization step: 2266. Total energy = 8336.9837 kcal/mol (8328.6781 without restraints) Performing minimization step: 2267. Total energy = 8334.1525 kcal/mol (8325.8485 without restraints) Performing minimization step: 2268. Total energy = 8331.3221 kcal/mol (8323.0196 without restraints) Performing minimization step: 2269. Total energy = 8328.4927 kcal/mol (8320.1921 without restraints) Performing minimization step: 2270. Total energy = 8325.6647 kcal/mol (8317.3658 without restraints) Performing minimization step: 2271. Total energy = 8322.8380 kcal/mol (8314.5406 without restraints) Performing minimization step: 2272. Total energy = 8320.0126 kcal/mol (8311.7171 without restraints) Performing minimization step: 2273. Total energy = 8317.1882 kcal/mol (8308.8943 without restraints) Performing minimization step: 2274. Total energy = 8314.3654 kcal/mol (8306.0731 without restraints) Performing minimization step: 2275. Total energy = 8311.5436 kcal/mol (8303.2531 without restraints) Performing minimization step: 2276. Total energy = 8308.7231 kcal/mol (8300.4343 without restraints) Performing minimization step: 2277. Total energy = 8305.9038 kcal/mol (8297.6166 without restraints) Performing minimization step: 2278. Total energy = 8303.0858 kcal/mol (8294.8003 without restraints) Performing minimization step: 2279. Total energy = 8300.2687 kcal/mol (8291.9847 without restraints) Performing minimization step: 2280. Total energy = 8297.4527 kcal/mol (8289.1705 without restraints) Performing minimization step: 2281. Total energy = 8294.6383 kcal/mol (8286.3577 without restraints) Performing minimization step: 2282. Total energy = 8291.8246 kcal/mol (8283.5457 without restraints) Performing minimization step: 2283. Total energy = 8289.0124 kcal/mol (8280.7353 without restraints) Performing minimization step: 2284. Total energy = 8286.2014 kcal/mol (8277.9259 without restraints) Performing minimization step: 2285. Total energy = 8283.3915 kcal/mol (8275.1176 without restraints) Performing minimization step: 2286. Total energy = 8280.5827 kcal/mol (8272.3105 without restraints) Performing minimization step: 2287. Total energy = 8277.7754 kcal/mol (8269.5048 without restraints) Performing minimization step: 2288. Total energy = 8274.9694 kcal/mol (8266.7005 without restraints) Performing minimization step: 2289. Total energy = 8272.1641 kcal/mol (8263.8970 without restraints) Performing minimization step: 2290. Total energy = 8269.3602 kcal/mol (8261.0946 without restraints) Performing minimization step: 2291. Total energy = 8266.5574 kcal/mol (8258.2935 without restraints) Performing minimization step: 2292. Total energy = 8263.7559 kcal/mol (8255.4937 without restraints) Performing minimization step: 2293. Total energy = 8260.9555 kcal/mol (8252.6949 without restraints) Performing minimization step: 2294. Total energy = 8258.1560 kcal/mol (8249.8971 without restraints) Performing minimization step: 2295. Total energy = 8255.3578 kcal/mol (8247.1004 without restraints) Performing minimization step: 2296. Total energy = 8252.5607 kcal/mol (8244.3050 without restraints) Performing minimization step: 2297. Total energy = 8249.7648 kcal/mol (8241.5108 without restraints) Performing minimization step: 2298. Total energy = 8246.9700 kcal/mol (8238.7176 without restraints) Performing minimization step: 2299. Total energy = 8244.1765 kcal/mol (8235.9258 without restraints) Performing minimization step: 2300. Total energy = 8241.3837 kcal/mol (8233.1346 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 8238.5924 kcal/mol (8230.3450 without restraints) Performing minimization step: 2302. Total energy = 8235.8020 kcal/mol (8227.5562 without restraints) Performing minimization step: 2303. Total energy = 8233.0135 kcal/mol (8224.7693 without restraints) Performing minimization step: 2304. Total energy = 8230.2256 kcal/mol (8221.9831 without restraints) Performing minimization step: 2305. Total energy = 8227.4390 kcal/mol (8219.1982 without restraints) Performing minimization step: 2306. Total energy = 8224.6536 kcal/mol (8216.4144 without restraints) Performing minimization step: 2307. Total energy = 8221.8692 kcal/mol (8213.6316 without restraints) Performing minimization step: 2308. Total energy = 8219.0858 kcal/mol (8210.8499 without restraints) Performing minimization step: 2309. Total energy = 8216.3034 kcal/mol (8208.0691 without restraints) Performing minimization step: 2310. Total energy = 8213.5223 kcal/mol (8205.2896 without restraints) Performing minimization step: 2311. Total energy = 8210.7428 kcal/mol (8202.5118 without restraints) Performing minimization step: 2312. Total energy = 8207.9641 kcal/mol (8199.7348 without restraints) Performing minimization step: 2313. Total energy = 8205.1868 kcal/mol (8196.9590 without restraints) Performing minimization step: 2314. Total energy = 8202.4104 kcal/mol (8194.1843 without restraints) Performing minimization step: 2315. Total energy = 8199.6349 kcal/mol (8191.4104 without restraints) Performing minimization step: 2316. Total energy = 8196.8604 kcal/mol (8188.6375 without restraints) Performing minimization step: 2317. Total energy = 8194.0872 kcal/mol (8185.8659 without restraints) Performing minimization step: 2318. Total energy = 8191.3152 kcal/mol (8183.0957 without restraints) Performing minimization step: 2319. Total energy = 8188.5443 kcal/mol (8180.3263 without restraints) Performing minimization step: 2320. Total energy = 8185.7745 kcal/mol (8177.5581 without restraints) Performing minimization step: 2321. Total energy = 8183.0057 kcal/mol (8174.7909 without restraints) Performing minimization step: 2322. Total energy = 8180.2381 kcal/mol (8172.0251 without restraints) Performing minimization step: 2323. Total energy = 8177.4721 kcal/mol (8169.2607 without restraints) Performing minimization step: 2324. Total energy = 8174.7069 kcal/mol (8166.4971 without restraints) Performing minimization step: 2325. Total energy = 8171.9426 kcal/mol (8163.7343 without restraints) Performing minimization step: 2326. Total energy = 8169.1795 kcal/mol (8160.9729 without restraints) Performing minimization step: 2327. Total energy = 8166.4176 kcal/mol (8158.2125 without restraints) Performing minimization step: 2328. Total energy = 8163.6567 kcal/mol (8155.4533 without restraints) Performing minimization step: 2329. Total energy = 8160.8969 kcal/mol (8152.6951 without restraints) Performing minimization step: 2330. Total energy = 8158.1376 kcal/mol (8149.9374 without restraints) Performing minimization step: 2331. Total energy = 8155.3798 kcal/mol (8147.1812 without restraints) Performing minimization step: 2332. Total energy = 8152.6232 kcal/mol (8144.4262 without restraints) Performing minimization step: 2333. Total energy = 8149.8678 kcal/mol (8141.6724 without restraints) Performing minimization step: 2334. Total energy = 8147.1133 kcal/mol (8138.9196 without restraints) Performing minimization step: 2335. Total energy = 8144.3602 kcal/mol (8136.1680 without restraints) Performing minimization step: 2336. Total energy = 8141.6079 kcal/mol (8133.4173 without restraints) Performing minimization step: 2337. Total energy = 8138.8565 kcal/mol (8130.6676 without restraints) Performing minimization step: 2338. Total energy = 8136.1066 kcal/mol (8127.9192 without restraints) Performing minimization step: 2339. Total energy = 8133.3579 kcal/mol (8125.1723 without restraints) Performing minimization step: 2340. Total energy = 8130.6099 kcal/mol (8122.4257 without restraints) Performing minimization step: 2341. Total energy = 8127.8627 kcal/mol (8119.6803 without restraints) Performing minimization step: 2342. Total energy = 8125.1170 kcal/mol (8116.9361 without restraints) Performing minimization step: 2343. Total energy = 8122.3719 kcal/mol (8114.1926 without restraints) Performing minimization step: 2344. Total energy = 8119.6280 kcal/mol (8111.4502 without restraints) Performing minimization step: 2345. Total energy = 8116.8854 kcal/mol (8108.7093 without restraints) Performing minimization step: 2346. Total energy = 8114.1440 kcal/mol (8105.9694 without restraints) Performing minimization step: 2347. Total energy = 8111.4034 kcal/mol (8103.2305 without restraints) Performing minimization step: 2348. Total energy = 8108.6640 kcal/mol (8100.4927 without restraints) Performing minimization step: 2349. Total energy = 8105.9258 kcal/mol (8097.7561 without restraints) Performing minimization step: 2350. Total energy = 8103.1887 kcal/mol (8095.0205 without restraints) Performing minimization step: 2351. Total energy = 8100.4532 kcal/mol (8092.2867 without restraints) Performing minimization step: 2352. Total energy = 8097.7182 kcal/mol (8089.5532 without restraints) Performing minimization step: 2353. Total energy = 8094.9841 kcal/mol (8086.8207 without restraints) Performing minimization step: 2354. Total energy = 8092.2510 kcal/mol (8084.0891 without restraints) Performing minimization step: 2355. Total energy = 8089.5188 kcal/mol (8081.3586 without restraints) Performing minimization step: 2356. Total energy = 8086.7880 kcal/mol (8078.6294 without restraints) Performing minimization step: 2357. Total energy = 8084.0582 kcal/mol (8075.9011 without restraints) Performing minimization step: 2358. Total energy = 8081.3295 kcal/mol (8073.1740 without restraints) Performing minimization step: 2359. Total energy = 8078.6017 kcal/mol (8070.4478 without restraints) Performing minimization step: 2360. Total energy = 8075.8748 kcal/mol (8067.7224 without restraints) Performing minimization step: 2361. Total energy = 8073.1490 kcal/mol (8064.9983 without restraints) Performing minimization step: 2362. Total energy = 8070.4243 kcal/mol (8062.2752 without restraints) Performing minimization step: 2363. Total energy = 8067.7008 kcal/mol (8059.5532 without restraints) Performing minimization step: 2364. Total energy = 8064.9788 kcal/mol (8056.8328 without restraints) Performing minimization step: 2365. Total energy = 8062.2573 kcal/mol (8054.1129 without restraints) Performing minimization step: 2366. Total energy = 8059.5371 kcal/mol (8051.3943 without restraints) Performing minimization step: 2367. Total energy = 8056.8174 kcal/mol (8048.6761 without restraints) Performing minimization step: 2368. Total energy = 8054.0989 kcal/mol (8045.9592 without restraints) Performing minimization step: 2369. Total energy = 8051.3817 kcal/mol (8043.2436 without restraints) Performing minimization step: 2370. Total energy = 8048.6654 kcal/mol (8040.5288 without restraints) Performing minimization step: 2371. Total energy = 8045.9501 kcal/mol (8037.8151 without restraints) Performing minimization step: 2372. Total energy = 8043.2358 kcal/mol (8035.1023 without restraints) Performing minimization step: 2373. Total energy = 8040.5228 kcal/mol (8032.3909 without restraints) Performing minimization step: 2374. Total energy = 8037.8104 kcal/mol (8029.6800 without restraints) Performing minimization step: 2375. Total energy = 8035.0993 kcal/mol (8026.9705 without restraints) Performing minimization step: 2376. Total energy = 8032.3887 kcal/mol (8024.2616 without restraints) Performing minimization step: 2377. Total energy = 8029.6796 kcal/mol (8021.5540 without restraints) Performing minimization step: 2378. Total energy = 8026.9717 kcal/mol (8018.8476 without restraints) Performing minimization step: 2379. Total energy = 8024.2645 kcal/mol (8016.1421 without restraints) Performing minimization step: 2380. Total energy = 8021.5583 kcal/mol (8013.4374 without restraints) Performing minimization step: 2381. Total energy = 8018.8534 kcal/mol (8010.7340 without restraints) Performing minimization step: 2382. Total energy = 8016.1497 kcal/mol (8008.0319 without restraints) Performing minimization step: 2383. Total energy = 8013.4471 kcal/mol (8005.3309 without restraints) Performing minimization step: 2384. Total energy = 8010.7450 kcal/mol (8002.6303 without restraints) Performing minimization step: 2385. Total energy = 8008.0445 kcal/mol (7999.9314 without restraints) Performing minimization step: 2386. Total energy = 8005.3444 kcal/mol (7997.2328 without restraints) Performing minimization step: 2387. Total energy = 8002.6455 kcal/mol (7994.5355 without restraints) Performing minimization step: 2388. Total energy = 7999.9479 kcal/mol (7991.8395 without restraints) Performing minimization step: 2389. Total energy = 7997.2509 kcal/mol (7989.1442 without restraints) Performing minimization step: 2390. Total energy = 7994.5554 kcal/mol (7986.4500 without restraints) Performing minimization step: 2391. Total energy = 7991.8607 kcal/mol (7983.7569 without restraints) Performing minimization step: 2392. Total energy = 7989.1669 kcal/mol (7981.0647 without restraints) Performing minimization step: 2393. Total energy = 7986.4746 kcal/mol (7978.3739 without restraints) Performing minimization step: 2394. Total energy = 7983.7833 kcal/mol (7975.6841 without restraints) Performing minimization step: 2395. Total energy = 7981.0928 kcal/mol (7972.9952 without restraints) Performing minimization step: 2396. Total energy = 7978.4032 kcal/mol (7970.3072 without restraints) Performing minimization step: 2397. Total energy = 7975.7145 kcal/mol (7967.6200 without restraints) Performing minimization step: 2398. Total energy = 7973.0268 kcal/mol (7964.9338 without restraints) Performing minimization step: 2399. Total energy = 7970.3400 kcal/mol (7962.2486 without restraints) Performing minimization step: 2400. Total energy = 7967.6543 kcal/mol (7959.5644 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 7964.9702 kcal/mol (7956.8819 without restraints) Performing minimization step: 2402. Total energy = 7962.2866 kcal/mol (7954.1998 without restraints) Performing minimization step: 2403. Total energy = 7959.6041 kcal/mol (7951.5190 without restraints) Performing minimization step: 2404. Total energy = 7956.9226 kcal/mol (7948.8389 without restraints) Performing minimization step: 2405. Total energy = 7954.2419 kcal/mol (7946.1597 without restraints) Performing minimization step: 2406. Total energy = 7951.5622 kcal/mol (7943.4815 without restraints) Performing minimization step: 2407. Total energy = 7948.8839 kcal/mol (7940.8047 without restraints) Performing minimization step: 2408. Total energy = 7946.2064 kcal/mol (7938.1288 without restraints) Performing minimization step: 2409. Total energy = 7943.5298 kcal/mol (7935.4537 without restraints) Performing minimization step: 2410. Total energy = 7940.8540 kcal/mol (7932.7793 without restraints) Performing minimization step: 2411. Total energy = 7938.1795 kcal/mol (7930.1065 without restraints) Performing minimization step: 2412. Total energy = 7935.5061 kcal/mol (7927.4346 without restraints) Performing minimization step: 2413. Total energy = 7932.8330 kcal/mol (7924.7630 without restraints) Performing minimization step: 2414. Total energy = 7930.1612 kcal/mol (7922.0927 without restraints) Performing minimization step: 2415. Total energy = 7927.4907 kcal/mol (7919.4238 without restraints) Performing minimization step: 2416. Total energy = 7924.8214 kcal/mol (7916.7561 without restraints) Performing minimization step: 2417. Total energy = 7922.1528 kcal/mol (7914.0889 without restraints) Performing minimization step: 2418. Total energy = 7919.4861 kcal/mol (7911.4238 without restraints) Performing minimization step: 2419. Total energy = 7916.8195 kcal/mol (7908.7587 without restraints) Performing minimization step: 2420. Total energy = 7914.1538 kcal/mol (7906.0945 without restraints) Performing minimization step: 2421. Total energy = 7911.4887 kcal/mol (7903.4310 without restraints) Performing minimization step: 2422. Total energy = 7908.8250 kcal/mol (7900.7688 without restraints) Performing minimization step: 2423. Total energy = 7906.1626 kcal/mol (7898.1080 without restraints) Performing minimization step: 2424. Total energy = 7903.5009 kcal/mol (7895.4477 without restraints) Performing minimization step: 2425. Total energy = 7900.8403 kcal/mol (7892.7887 without restraints) Performing minimization step: 2426. Total energy = 7898.1805 kcal/mol (7890.1305 without restraints) Performing minimization step: 2427. Total energy = 7895.5219 kcal/mol (7887.4733 without restraints) Performing minimization step: 2428. Total energy = 7892.8644 kcal/mol (7884.8173 without restraints) Performing minimization step: 2429. Total energy = 7890.2080 kcal/mol (7882.1624 without restraints) Performing minimization step: 2430. Total energy = 7887.5523 kcal/mol (7879.5082 without restraints) Performing minimization step: 2431. Total energy = 7884.8980 kcal/mol (7876.8554 without restraints) Performing minimization step: 2432. Total energy = 7882.2442 kcal/mol (7874.2031 without restraints) Performing minimization step: 2433. Total energy = 7879.5911 kcal/mol (7871.5515 without restraints) Performing minimization step: 2434. Total energy = 7876.9393 kcal/mol (7868.9012 without restraints) Performing minimization step: 2435. Total energy = 7874.2884 kcal/mol (7866.2519 without restraints) Performing minimization step: 2436. Total energy = 7871.6387 kcal/mol (7863.6038 without restraints) Performing minimization step: 2437. Total energy = 7868.9899 kcal/mol (7860.9564 without restraints) Performing minimization step: 2438. Total energy = 7866.3421 kcal/mol (7858.3102 without restraints) Performing minimization step: 2439. Total energy = 7863.6953 kcal/mol (7855.6648 without restraints) Performing minimization step: 2440. Total energy = 7861.0497 kcal/mol (7853.0207 without restraints) Performing minimization step: 2441. Total energy = 7858.4048 kcal/mol (7850.3773 without restraints) Performing minimization step: 2442. Total energy = 7855.7611 kcal/mol (7847.7351 without restraints) Performing minimization step: 2443. Total energy = 7853.1181 kcal/mol (7845.0936 without restraints) Performing minimization step: 2444. Total energy = 7850.4762 kcal/mol (7842.4532 without restraints) Performing minimization step: 2445. Total energy = 7847.8352 kcal/mol (7839.8137 without restraints) Performing minimization step: 2446. Total energy = 7845.1952 kcal/mol (7837.1752 without restraints) Performing minimization step: 2447. Total energy = 7842.5567 kcal/mol (7834.5382 without restraints) Performing minimization step: 2448. Total energy = 7839.9192 kcal/mol (7831.9023 without restraints) Performing minimization step: 2449. Total energy = 7837.2825 kcal/mol (7829.2670 without restraints) Performing minimization step: 2450. Total energy = 7834.6466 kcal/mol (7826.6326 without restraints) Performing minimization step: 2451. Total energy = 7832.0116 kcal/mol (7823.9991 without restraints) Performing minimization step: 2452. Total energy = 7829.3777 kcal/mol (7821.3667 without restraints) Performing minimization step: 2453. Total energy = 7826.7446 kcal/mol (7818.7351 without restraints) Performing minimization step: 2454. Total energy = 7824.1125 kcal/mol (7816.1045 without restraints) Performing minimization step: 2455. Total energy = 7821.4816 kcal/mol (7813.4750 without restraints) Performing minimization step: 2456. Total energy = 7818.8517 kcal/mol (7810.8466 without restraints) Performing minimization step: 2457. Total energy = 7816.2228 kcal/mol (7808.2193 without restraints) Performing minimization step: 2458. Total energy = 7813.5948 kcal/mol (7805.5929 without restraints) Performing minimization step: 2459. Total energy = 7810.9679 kcal/mol (7802.9673 without restraints) Performing minimization step: 2460. Total energy = 7808.3418 kcal/mol (7800.3428 without restraints) Performing minimization step: 2461. Total energy = 7805.7166 kcal/mol (7797.7189 without restraints) Performing minimization step: 2462. Total energy = 7803.0923 kcal/mol (7795.0962 without restraints) Performing minimization step: 2463. Total energy = 7800.4691 kcal/mol (7792.4744 without restraints) Performing minimization step: 2464. Total energy = 7797.8469 kcal/mol (7789.8538 without restraints) Performing minimization step: 2465. Total energy = 7795.2256 kcal/mol (7787.2339 without restraints) Performing minimization step: 2466. Total energy = 7792.6050 kcal/mol (7784.6148 without restraints) Performing minimization step: 2467. Total energy = 7789.9858 kcal/mol (7781.9971 without restraints) Performing minimization step: 2468. Total energy = 7787.3678 kcal/mol (7779.3805 without restraints) Performing minimization step: 2469. Total energy = 7784.7503 kcal/mol (7776.7646 without restraints) Performing minimization step: 2470. Total energy = 7782.1340 kcal/mol (7774.1497 without restraints) Performing minimization step: 2471. Total energy = 7779.5183 kcal/mol (7771.5355 without restraints) Performing minimization step: 2472. Total energy = 7776.9039 kcal/mol (7768.9227 without restraints) Performing minimization step: 2473. Total energy = 7774.2905 kcal/mol (7766.3106 without restraints) Performing minimization step: 2474. Total energy = 7771.6778 kcal/mol (7763.6994 without restraints) Performing minimization step: 2475. Total energy = 7769.0664 kcal/mol (7761.0893 without restraints) Performing minimization step: 2476. Total energy = 7766.4558 kcal/mol (7758.4804 without restraints) Performing minimization step: 2477. Total energy = 7763.8467 kcal/mol (7755.8727 without restraints) Performing minimization step: 2478. Total energy = 7761.2380 kcal/mol (7753.2655 without restraints) Performing minimization step: 2479. Total energy = 7758.6304 kcal/mol (7750.6594 without restraints) Performing minimization step: 2480. Total energy = 7756.0242 kcal/mol (7748.0548 without restraints) Performing minimization step: 2481. Total energy = 7753.4187 kcal/mol (7745.4506 without restraints) Performing minimization step: 2482. Total energy = 7750.8142 kcal/mol (7742.8476 without restraints) Performing minimization step: 2483. Total energy = 7748.2106 kcal/mol (7740.2454 without restraints) Performing minimization step: 2484. Total energy = 7745.6080 kcal/mol (7737.6443 without restraints) Performing minimization step: 2485. Total energy = 7743.0066 kcal/mol (7735.0443 without restraints) Performing minimization step: 2486. Total energy = 7740.4059 kcal/mol (7732.4452 without restraints) Performing minimization step: 2487. Total energy = 7737.8062 kcal/mol (7729.8469 without restraints) Performing minimization step: 2488. Total energy = 7735.2071 kcal/mol (7727.2493 without restraints) Performing minimization step: 2489. Total energy = 7732.6093 kcal/mol (7724.6529 without restraints) Performing minimization step: 2490. Total energy = 7730.0124 kcal/mol (7722.0575 without restraints) Performing minimization step: 2491. Total energy = 7727.4166 kcal/mol (7719.4632 without restraints) Performing minimization step: 2492. Total energy = 7724.8221 kcal/mol (7716.8701 without restraints) Performing minimization step: 2493. Total energy = 7722.2280 kcal/mol (7714.2775 without restraints) Performing minimization step: 2494. Total energy = 7719.6352 kcal/mol (7711.6862 without restraints) Performing minimization step: 2495. Total energy = 7717.0432 kcal/mol (7709.0957 without restraints) Performing minimization step: 2496. Total energy = 7714.4523 kcal/mol (7706.5061 without restraints) Performing minimization step: 2497. Total energy = 7711.8627 kcal/mol (7703.9180 without restraints) Performing minimization step: 2498. Total energy = 7709.2736 kcal/mol (7701.3304 without restraints) Performing minimization step: 2499. Total energy = 7706.6857 kcal/mol (7698.7439 without restraints) Performing minimization step: 2500. Total energy = 7704.0985 kcal/mol (7696.1579 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 7701.5124 kcal/mol (7693.5735 without restraints) Performing minimization step: 2502. Total energy = 7698.9273 kcal/mol (7690.9899 without restraints) Performing minimization step: 2503. Total energy = 7696.3432 kcal/mol (7688.4073 without restraints) Performing minimization step: 2504. Total energy = 7693.7601 kcal/mol (7685.8256 without restraints) Performing minimization step: 2505. Total energy = 7691.1780 kcal/mol (7683.2450 without restraints) Performing minimization step: 2506. Total energy = 7688.5967 kcal/mol (7680.6651 without restraints) Performing minimization step: 2507. Total energy = 7686.0163 kcal/mol (7678.0860 without restraints) Performing minimization step: 2508. Total energy = 7683.4371 kcal/mol (7675.5086 without restraints) Performing minimization step: 2509. Total energy = 7680.8590 kcal/mol (7672.9317 without restraints) Performing minimization step: 2510. Total energy = 7678.2818 kcal/mol (7670.3560 without restraints) Performing minimization step: 2511. Total energy = 7675.7062 kcal/mol (7667.7818 without restraints) Performing minimization step: 2512. Total energy = 7673.1308 kcal/mol (7665.2079 without restraints) Performing minimization step: 2513. Total energy = 7670.5566 kcal/mol (7662.6351 without restraints) Performing minimization step: 2514. Total energy = 7667.9833 kcal/mol (7660.0633 without restraints) Performing minimization step: 2515. Total energy = 7665.4111 kcal/mol (7657.4925 without restraints) Performing minimization step: 2516. Total energy = 7662.8400 kcal/mol (7654.9228 without restraints) Performing minimization step: 2517. Total energy = 7660.2697 kcal/mol (7652.3540 without restraints) Performing minimization step: 2518. Total energy = 7657.7004 kcal/mol (7649.7861 without restraints) Performing minimization step: 2519. Total energy = 7655.1321 kcal/mol (7647.2193 without restraints) Performing minimization step: 2520. Total energy = 7652.5650 kcal/mol (7644.6536 without restraints) Performing minimization step: 2521. Total energy = 7649.9987 kcal/mol (7642.0888 without restraints) Performing minimization step: 2522. Total energy = 7647.4336 kcal/mol (7639.5251 without restraints) Performing minimization step: 2523. Total energy = 7644.8693 kcal/mol (7636.9623 without restraints) Performing minimization step: 2524. Total energy = 7642.3062 kcal/mol (7634.4006 without restraints) Performing minimization step: 2525. Total energy = 7639.7438 kcal/mol (7631.8396 without restraints) Performing minimization step: 2526. Total energy = 7637.1824 kcal/mol (7629.2797 without restraints) Performing minimization step: 2527. Total energy = 7634.6221 kcal/mol (7626.7208 without restraints) Performing minimization step: 2528. Total energy = 7632.0626 kcal/mol (7624.1627 without restraints) Performing minimization step: 2529. Total energy = 7629.5044 kcal/mol (7621.6060 without restraints) Performing minimization step: 2530. Total energy = 7626.9471 kcal/mol (7619.0500 without restraints) Performing minimization step: 2531. Total energy = 7624.3906 kcal/mol (7616.4951 without restraints) Performing minimization step: 2532. Total energy = 7621.8352 kcal/mol (7613.9411 without restraints) Performing minimization step: 2533. Total energy = 7619.2812 kcal/mol (7611.3885 without restraints) Performing minimization step: 2534. Total energy = 7616.7280 kcal/mol (7608.8367 without restraints) Performing minimization step: 2535. Total energy = 7614.1758 kcal/mol (7606.2860 without restraints) Performing minimization step: 2536. Total energy = 7611.6242 kcal/mol (7603.7358 without restraints) Performing minimization step: 2537. Total energy = 7609.0741 kcal/mol (7601.1872 without restraints) Performing minimization step: 2538. Total energy = 7606.5245 kcal/mol (7598.6390 without restraints) Performing minimization step: 2539. Total energy = 7603.9759 kcal/mol (7596.0917 without restraints) Performing minimization step: 2540. Total energy = 7601.4282 kcal/mol (7593.5456 without restraints) Performing minimization step: 2541. Total energy = 7598.8819 kcal/mol (7591.0006 without restraints) Performing minimization step: 2542. Total energy = 7596.3371 kcal/mol (7588.4572 without restraints) Performing minimization step: 2543. Total energy = 7593.7926 kcal/mol (7585.9142 without restraints) Performing minimization step: 2544. Total energy = 7591.2492 kcal/mol (7583.3720 without restraints) Performing minimization step: 2545. Total energy = 7588.7068 kcal/mol (7580.8314 without restraints) Performing minimization step: 2546. Total energy = 7586.1656 kcal/mol (7578.2914 without restraints) Performing minimization step: 2547. Total energy = 7583.6251 kcal/mol (7575.7524 without restraints) Performing minimization step: 2548. Total energy = 7581.0859 kcal/mol (7573.2146 without restraints) Performing minimization step: 2549. Total energy = 7578.5476 kcal/mol (7570.6777 without restraints) Performing minimization step: 2550. Total energy = 7576.0102 kcal/mol (7568.1418 without restraints) Performing minimization step: 2551. Total energy = 7573.4737 kcal/mol (7565.6067 without restraints) Performing minimization step: 2552. Total energy = 7570.9382 kcal/mol (7563.0725 without restraints) Performing minimization step: 2553. Total energy = 7568.4040 kcal/mol (7560.5399 without restraints) Performing minimization step: 2554. Total energy = 7565.8706 kcal/mol (7558.0078 without restraints) Performing minimization step: 2555. Total energy = 7563.3384 kcal/mol (7555.4770 without restraints) Performing minimization step: 2556. Total energy = 7560.8070 kcal/mol (7552.9470 without restraints) Performing minimization step: 2557. Total energy = 7558.2767 kcal/mol (7550.4182 without restraints) Performing minimization step: 2558. Total energy = 7555.7475 kcal/mol (7547.8904 without restraints) Performing minimization step: 2559. Total energy = 7553.2195 kcal/mol (7545.3637 without restraints) Performing minimization step: 2560. Total energy = 7550.6924 kcal/mol (7542.8382 without restraints) Performing minimization step: 2561. Total energy = 7548.1658 kcal/mol (7540.3129 without restraints) Performing minimization step: 2562. Total energy = 7545.6405 kcal/mol (7537.7890 without restraints) Performing minimization step: 2563. Total energy = 7543.1160 kcal/mol (7535.2660 without restraints) Performing minimization step: 2564. Total energy = 7540.5931 kcal/mol (7532.7444 without restraints) Performing minimization step: 2565. Total energy = 7538.0709 kcal/mol (7530.2236 without restraints) Performing minimization step: 2566. Total energy = 7535.5497 kcal/mol (7527.7038 without restraints) Performing minimization step: 2567. Total energy = 7533.0294 kcal/mol (7525.1850 without restraints) Performing minimization step: 2568. Total energy = 7530.5101 kcal/mol (7522.6671 without restraints) Performing minimization step: 2569. Total energy = 7527.9923 kcal/mol (7520.1507 without restraints) Performing minimization step: 2570. Total energy = 7525.4753 kcal/mol (7517.6350 without restraints) Performing minimization step: 2571. Total energy = 7522.9595 kcal/mol (7515.1211 without restraints) Performing minimization step: 2572. Total energy = 7520.4448 kcal/mol (7512.6073 without restraints) Performing minimization step: 2573. Total energy = 7517.9304 kcal/mol (7510.0944 without restraints) Performing minimization step: 2574. Total energy = 7515.4174 kcal/mol (7507.5828 without restraints) Performing minimization step: 2575. Total energy = 7512.9051 kcal/mol (7505.0719 without restraints) Performing minimization step: 2576. Total energy = 7510.3941 kcal/mol (7502.5624 without restraints) Performing minimization step: 2577. Total energy = 7507.8843 kcal/mol (7500.0540 without restraints) Performing minimization step: 2578. Total energy = 7505.3753 kcal/mol (7497.5463 without restraints) Performing minimization step: 2579. Total energy = 7502.8674 kcal/mol (7495.0398 without restraints) Performing minimization step: 2580. Total energy = 7500.3605 kcal/mol (7492.5343 without restraints) Performing minimization step: 2581. Total energy = 7497.8547 kcal/mol (7490.0300 without restraints) Performing minimization step: 2582. Total energy = 7495.3500 kcal/mol (7487.5266 without restraints) Performing minimization step: 2583. Total energy = 7492.8463 kcal/mol (7485.0243 without restraints) Performing minimization step: 2584. Total energy = 7490.3438 kcal/mol (7482.5233 without restraints) Performing minimization step: 2585. Total energy = 7487.8419 kcal/mol (7480.0227 without restraints) Performing minimization step: 2586. Total energy = 7485.3409 kcal/mol (7477.5229 without restraints) Performing minimization step: 2587. Total energy = 7482.8409 kcal/mol (7475.0245 without restraints) Performing minimization step: 2588. Total energy = 7480.3417 kcal/mol (7472.5267 without restraints) Performing minimization step: 2589. Total energy = 7477.8444 kcal/mol (7470.0308 without restraints) Performing minimization step: 2590. Total energy = 7475.3480 kcal/mol (7467.5358 without restraints) Performing minimization step: 2591. Total energy = 7472.8524 kcal/mol (7465.0416 without restraints) Performing minimization step: 2592. Total energy = 7470.3574 kcal/mol (7462.5480 without restraints) Performing minimization step: 2593. Total energy = 7467.8640 kcal/mol (7460.0559 without restraints) Performing minimization step: 2594. Total energy = 7465.3719 kcal/mol (7457.5652 without restraints) Performing minimization step: 2595. Total energy = 7462.8805 kcal/mol (7455.0752 without restraints) Performing minimization step: 2596. Total energy = 7460.3899 kcal/mol (7452.5860 without restraints) Performing minimization step: 2597. Total energy = 7457.9005 kcal/mol (7450.0980 without restraints) Performing minimization step: 2598. Total energy = 7455.4123 kcal/mol (7447.6113 without restraints) Performing minimization step: 2599. Total energy = 7452.9252 kcal/mol (7445.1255 without restraints) Performing minimization step: 2600. Total energy = 7450.4390 kcal/mol (7442.6407 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 7447.9540 kcal/mol (7440.1570 without restraints) Performing minimization step: 2602. Total energy = 7445.4698 kcal/mol (7437.6742 without restraints) Performing minimization step: 2603. Total energy = 7442.9867 kcal/mol (7435.1925 without restraints) Performing minimization step: 2604. Total energy = 7440.5046 kcal/mol (7432.7119 without restraints) Performing minimization step: 2605. Total energy = 7438.0239 kcal/mol (7430.2325 without restraints) Performing minimization step: 2606. Total energy = 7435.5442 kcal/mol (7427.7543 without restraints) Performing minimization step: 2607. Total energy = 7433.0657 kcal/mol (7425.2771 without restraints) Performing minimization step: 2608. Total energy = 7430.5883 kcal/mol (7422.8011 without restraints) Performing minimization step: 2609. Total energy = 7428.1118 kcal/mol (7420.3260 without restraints) Performing minimization step: 2610. Total energy = 7425.6359 kcal/mol (7417.8515 without restraints) Performing minimization step: 2611. Total energy = 7423.1613 kcal/mol (7415.3782 without restraints) Performing minimization step: 2612. Total energy = 7420.6874 kcal/mol (7412.9057 without restraints) Performing minimization step: 2613. Total energy = 7418.2148 kcal/mol (7410.4345 without restraints) Performing minimization step: 2614. Total energy = 7415.7434 kcal/mol (7407.9645 without restraints) Performing minimization step: 2615. Total energy = 7413.2726 kcal/mol (7405.4949 without restraints) Performing minimization step: 2616. Total energy = 7410.8032 kcal/mol (7403.0271 without restraints) Performing minimization step: 2617. Total energy = 7408.3349 kcal/mol (7400.5600 without restraints) Performing minimization step: 2618. Total energy = 7405.8673 kcal/mol (7398.0939 without restraints) Performing minimization step: 2619. Total energy = 7403.4012 kcal/mol (7395.6293 without restraints) Performing minimization step: 2620. Total energy = 7400.9360 kcal/mol (7393.1653 without restraints) Performing minimization step: 2621. Total energy = 7398.4719 kcal/mol (7390.7026 without restraints) Performing minimization step: 2622. Total energy = 7396.0089 kcal/mol (7388.2409 without restraints) Performing minimization step: 2623. Total energy = 7393.5473 kcal/mol (7385.7807 without restraints) Performing minimization step: 2624. Total energy = 7391.0865 kcal/mol (7383.3214 without restraints) Performing minimization step: 2625. Total energy = 7388.6271 kcal/mol (7380.8633 without restraints) Performing minimization step: 2626. Total energy = 7386.1681 kcal/mol (7378.4057 without restraints) Performing minimization step: 2627. Total energy = 7383.7104 kcal/mol (7375.9493 without restraints) Performing minimization step: 2628. Total energy = 7381.2539 kcal/mol (7373.4943 without restraints) Performing minimization step: 2629. Total energy = 7378.7983 kcal/mol (7371.0400 without restraints) Performing minimization step: 2630. Total energy = 7376.3439 kcal/mol (7368.5869 without restraints) Performing minimization step: 2631. Total energy = 7373.8907 kcal/mol (7366.1352 without restraints) Performing minimization step: 2632. Total energy = 7371.4380 kcal/mol (7363.6838 without restraints) Performing minimization step: 2633. Total energy = 7368.9870 kcal/mol (7361.2342 without restraints) Performing minimization step: 2634. Total energy = 7366.5367 kcal/mol (7358.7852 without restraints) Performing minimization step: 2635. Total energy = 7364.0874 kcal/mol (7356.3372 without restraints) Performing minimization step: 2636. Total energy = 7361.6392 kcal/mol (7353.8905 without restraints) Performing minimization step: 2637. Total energy = 7359.1922 kcal/mol (7351.4448 without restraints) Performing minimization step: 2638. Total energy = 7356.7462 kcal/mol (7349.0002 without restraints) Performing minimization step: 2639. Total energy = 7354.3017 kcal/mol (7346.5570 without restraints) Performing minimization step: 2640. Total energy = 7351.8579 kcal/mol (7344.1146 without restraints) Performing minimization step: 2641. Total energy = 7349.4153 kcal/mol (7341.6734 without restraints) Performing minimization step: 2642. Total energy = 7346.9738 kcal/mol (7339.2332 without restraints) Performing minimization step: 2643. Total energy = 7344.5330 kcal/mol (7336.7938 without restraints) Performing minimization step: 2644. Total energy = 7342.0933 kcal/mol (7334.3555 without restraints) Performing minimization step: 2645. Total energy = 7339.6552 kcal/mol (7331.9189 without restraints) Performing minimization step: 2646. Total energy = 7337.2181 kcal/mol (7329.4830 without restraints) Performing minimization step: 2647. Total energy = 7334.7821 kcal/mol (7327.0484 without restraints) Performing minimization step: 2648. Total energy = 7332.3470 kcal/mol (7324.6146 without restraints) Performing minimization step: 2649. Total energy = 7329.9129 kcal/mol (7322.1819 without restraints) Performing minimization step: 2650. Total energy = 7327.4801 kcal/mol (7319.7505 without restraints) Performing minimization step: 2651. Total energy = 7325.0481 kcal/mol (7317.3199 without restraints) Performing minimization step: 2652. Total energy = 7322.6174 kcal/mol (7314.8905 without restraints) Performing minimization step: 2653. Total energy = 7320.1877 kcal/mol (7312.4621 without restraints) Performing minimization step: 2654. Total energy = 7317.7587 kcal/mol (7310.0345 without restraints) Performing minimization step: 2655. Total energy = 7315.3312 kcal/mol (7307.6083 without restraints) Performing minimization step: 2656. Total energy = 7312.9048 kcal/mol (7305.1833 without restraints) Performing minimization step: 2657. Total energy = 7310.4794 kcal/mol (7302.7593 without restraints) Performing minimization step: 2658. Total energy = 7308.0552 kcal/mol (7300.3364 without restraints) Performing minimization step: 2659. Total energy = 7305.6320 kcal/mol (7297.9146 without restraints) Performing minimization step: 2660. Total energy = 7303.2099 kcal/mol (7295.4939 without restraints) Performing minimization step: 2661. Total energy = 7300.7892 kcal/mol (7293.0746 without restraints) Performing minimization step: 2662. Total energy = 7298.3695 kcal/mol (7290.6561 without restraints) Performing minimization step: 2663. Total energy = 7295.9505 kcal/mol (7288.2383 without restraints) Performing minimization step: 2664. Total energy = 7293.5332 kcal/mol (7285.8226 without restraints) Performing minimization step: 2665. Total energy = 7291.1166 kcal/mol (7283.4073 without restraints) Performing minimization step: 2666. Total energy = 7288.7012 kcal/mol (7280.9932 without restraints) Performing minimization step: 2667. Total energy = 7286.2870 kcal/mol (7278.5804 without restraints) Performing minimization step: 2668. Total energy = 7283.8737 kcal/mol (7276.1685 without restraints) Performing minimization step: 2669. Total energy = 7281.4616 kcal/mol (7273.7577 without restraints) Performing minimization step: 2670. Total energy = 7279.0502 kcal/mol (7271.3477 without restraints) Performing minimization step: 2671. Total energy = 7276.6403 kcal/mol (7268.9391 without restraints) Performing minimization step: 2672. Total energy = 7274.2318 kcal/mol (7266.5319 without restraints) Performing minimization step: 2673. Total energy = 7271.8244 kcal/mol (7264.1260 without restraints) Performing minimization step: 2674. Total energy = 7269.4179 kcal/mol (7261.7208 without restraints) Performing minimization step: 2675. Total energy = 7267.0127 kcal/mol (7259.3170 without restraints) Performing minimization step: 2676. Total energy = 7264.6088 kcal/mol (7256.9144 without restraints) Performing minimization step: 2677. Total energy = 7262.2056 kcal/mol (7254.5125 without restraints) Performing minimization step: 2678. Total energy = 7259.8036 kcal/mol (7252.1120 without restraints) Performing minimization step: 2679. Total energy = 7257.4029 kcal/mol (7249.7125 without restraints) Performing minimization step: 2680. Total energy = 7255.0031 kcal/mol (7247.3140 without restraints) Performing minimization step: 2681. Total energy = 7252.6043 kcal/mol (7244.9166 without restraints) Performing minimization step: 2682. Total energy = 7250.2064 kcal/mol (7242.5200 without restraints) Performing minimization step: 2683. Total energy = 7247.8099 kcal/mol (7240.1249 without restraints) Performing minimization step: 2684. Total energy = 7245.4145 kcal/mol (7237.7308 without restraints) Performing minimization step: 2685. Total energy = 7243.0202 kcal/mol (7235.3378 without restraints) Performing minimization step: 2686. Total energy = 7240.6271 kcal/mol (7232.9461 without restraints) Performing minimization step: 2687. Total energy = 7238.2352 kcal/mol (7230.5557 without restraints) Performing minimization step: 2688. Total energy = 7235.8444 kcal/mol (7228.1661 without restraints) Performing minimization step: 2689. Total energy = 7233.4548 kcal/mol (7225.7778 without restraints) Performing minimization step: 2690. Total energy = 7231.0665 kcal/mol (7223.3911 without restraints) Performing minimization step: 2691. Total energy = 7228.6796 kcal/mol (7221.0053 without restraints) Performing minimization step: 2692. Total energy = 7226.2927 kcal/mol (7218.6198 without restraints) Performing minimization step: 2693. Total energy = 7223.9075 kcal/mol (7216.2359 without restraints) Performing minimization step: 2694. Total energy = 7221.5233 kcal/mol (7213.8530 without restraints) Performing minimization step: 2695. Total energy = 7219.1401 kcal/mol (7211.4712 without restraints) Performing minimization step: 2696. Total energy = 7216.7585 kcal/mol (7209.0909 without restraints) Performing minimization step: 2697. Total energy = 7214.3777 kcal/mol (7206.7115 without restraints) Performing minimization step: 2698. Total energy = 7211.9979 kcal/mol (7204.3330 without restraints) Performing minimization step: 2699. Total energy = 7209.6195 kcal/mol (7201.9560 without restraints) Performing minimization step: 2700. Total energy = 7207.2423 kcal/mol (7199.5800 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 7204.8665 kcal/mol (7197.2055 without restraints) Performing minimization step: 2702. Total energy = 7202.4912 kcal/mol (7194.8316 without restraints) Performing minimization step: 2703. Total energy = 7200.1175 kcal/mol (7192.4594 without restraints) Performing minimization step: 2704. Total energy = 7197.7452 kcal/mol (7190.0883 without restraints) Performing minimization step: 2705. Total energy = 7195.3736 kcal/mol (7187.7180 without restraints) Performing minimization step: 2706. Total energy = 7193.0033 kcal/mol (7185.3495 without restraints) Performing minimization step: 2707. Total energy = 7190.6344 kcal/mol (7182.9815 without restraints) Performing minimization step: 2708. Total energy = 7188.2660 kcal/mol (7180.6144 without restraints) Performing minimization step: 2709. Total energy = 7185.8992 kcal/mol (7178.2489 without restraints) Performing minimization step: 2710. Total energy = 7183.5334 kcal/mol (7175.8846 without restraints) Performing minimization step: 2711. Total energy = 7181.1686 kcal/mol (7173.5210 without restraints) Performing minimization step: 2712. Total energy = 7178.8050 kcal/mol (7171.1587 without restraints) Performing minimization step: 2713. Total energy = 7176.4425 kcal/mol (7168.7976 without restraints) Performing minimization step: 2714. Total energy = 7174.0818 kcal/mol (7166.4382 without restraints) Performing minimization step: 2715. Total energy = 7171.7216 kcal/mol (7164.0794 without restraints) Performing minimization step: 2716. Total energy = 7169.3629 kcal/mol (7161.7220 without restraints) Performing minimization step: 2717. Total energy = 7167.0051 kcal/mol (7159.3655 without restraints) Performing minimization step: 2718. Total energy = 7164.6486 kcal/mol (7157.0103 without restraints) Performing minimization step: 2719. Total energy = 7162.2933 kcal/mol (7154.6563 without restraints) Performing minimization step: 2720. Total energy = 7159.9390 kcal/mol (7152.3033 without restraints) Performing minimization step: 2721. Total energy = 7157.5859 kcal/mol (7149.9516 without restraints) Performing minimization step: 2722. Total energy = 7155.2338 kcal/mol (7147.6007 without restraints) Performing minimization step: 2723. Total energy = 7152.8828 kcal/mol (7145.2512 without restraints) Performing minimization step: 2724. Total energy = 7150.5333 kcal/mol (7142.9030 without restraints) Performing minimization step: 2725. Total energy = 7148.1845 kcal/mol (7140.5554 without restraints) Performing minimization step: 2726. Total energy = 7145.8370 kcal/mol (7138.2094 without restraints) Performing minimization step: 2727. Total energy = 7143.4911 kcal/mol (7135.8647 without restraints) Performing minimization step: 2728. Total energy = 7141.1463 kcal/mol (7133.5213 without restraints) Performing minimization step: 2729. Total energy = 7138.8029 kcal/mol (7131.1792 without restraints) Performing minimization step: 2730. Total energy = 7136.4602 kcal/mol (7128.8379 without restraints) Performing minimization step: 2731. Total energy = 7134.1187 kcal/mol (7126.4977 without restraints) Performing minimization step: 2732. Total energy = 7131.7784 kcal/mol (7124.1587 without restraints) Performing minimization step: 2733. Total energy = 7129.4390 kcal/mol (7121.8206 without restraints) Performing minimization step: 2734. Total energy = 7127.1010 kcal/mol (7119.4840 without restraints) Performing minimization step: 2735. Total energy = 7124.7646 kcal/mol (7117.1488 without restraints) Performing minimization step: 2736. Total energy = 7122.4290 kcal/mol (7114.8145 without restraints) Performing minimization step: 2737. Total energy = 7120.0946 kcal/mol (7112.4815 without restraints) Performing minimization step: 2738. Total energy = 7117.7614 kcal/mol (7110.1496 without restraints) Performing minimization step: 2739. Total energy = 7115.4293 kcal/mol (7107.8188 without restraints) Performing minimization step: 2740. Total energy = 7113.0986 kcal/mol (7105.4895 without restraints) Performing minimization step: 2741. Total energy = 7110.7690 kcal/mol (7103.1612 without restraints) Performing minimization step: 2742. Total energy = 7108.4405 kcal/mol (7100.8339 without restraints) Performing minimization step: 2743. Total energy = 7106.1129 kcal/mol (7098.5077 without restraints) Performing minimization step: 2744. Total energy = 7103.7869 kcal/mol (7096.1831 without restraints) Performing minimization step: 2745. Total energy = 7101.4625 kcal/mol (7093.8599 without restraints) Performing minimization step: 2746. Total energy = 7099.1388 kcal/mol (7091.5377 without restraints) Performing minimization step: 2747. Total energy = 7096.8165 kcal/mol (7089.2166 without restraints) Performing minimization step: 2748. Total energy = 7094.4952 kcal/mol (7086.8966 without restraints) Performing minimization step: 2749. Total energy = 7092.1751 kcal/mol (7084.5777 without restraints) Performing minimization step: 2750. Total energy = 7089.8561 kcal/mol (7082.2601 without restraints) Performing minimization step: 2751. Total energy = 7087.5381 kcal/mol (7079.9434 without restraints) Performing minimization step: 2752. Total energy = 7085.2215 kcal/mol (7077.6281 without restraints) Performing minimization step: 2753. Total energy = 7082.9061 kcal/mol (7075.3141 without restraints) Performing minimization step: 2754. Total energy = 7080.5924 kcal/mol (7073.0018 without restraints) Performing minimization step: 2755. Total energy = 7078.2796 kcal/mol (7070.6901 without restraints) Performing minimization step: 2756. Total energy = 7075.9677 kcal/mol (7068.3795 without restraints) Performing minimization step: 2757. Total energy = 7073.6570 kcal/mol (7066.0702 without restraints) Performing minimization step: 2758. Total energy = 7071.3477 kcal/mol (7063.7622 without restraints) Performing minimization step: 2759. Total energy = 7069.0396 kcal/mol (7061.4554 without restraints) Performing minimization step: 2760. Total energy = 7066.7327 kcal/mol (7059.1498 without restraints) Performing minimization step: 2761. Total energy = 7064.4273 kcal/mol (7056.8458 without restraints) Performing minimization step: 2762. Total energy = 7062.1227 kcal/mol (7054.5424 without restraints) Performing minimization step: 2763. Total energy = 7059.8194 kcal/mol (7052.2405 without restraints) Performing minimization step: 2764. Total energy = 7057.5172 kcal/mol (7049.9395 without restraints) Performing minimization step: 2765. Total energy = 7055.2167 kcal/mol (7047.6405 without restraints) Performing minimization step: 2766. Total energy = 7052.9171 kcal/mol (7045.3421 without restraints) Performing minimization step: 2767. Total energy = 7050.6192 kcal/mol (7043.0455 without restraints) Performing minimization step: 2768. Total energy = 7048.3218 kcal/mol (7040.7494 without restraints) Performing minimization step: 2769. Total energy = 7046.0257 kcal/mol (7038.4545 without restraints) Performing minimization step: 2770. Total energy = 7043.7308 kcal/mol (7036.1610 without restraints) Performing minimization step: 2771. Total energy = 7041.4377 kcal/mol (7033.8692 without restraints) Performing minimization step: 2772. Total energy = 7039.1458 kcal/mol (7031.5787 without restraints) Performing minimization step: 2773. Total energy = 7036.8546 kcal/mol (7029.2886 without restraints) Performing minimization step: 2774. Total energy = 7034.5648 kcal/mol (7027.0003 without restraints) Performing minimization step: 2775. Total energy = 7032.2765 kcal/mol (7024.7134 without restraints) Performing minimization step: 2776. Total energy = 7029.9894 kcal/mol (7022.4273 without restraints) Performing minimization step: 2777. Total energy = 7027.7030 kcal/mol (7020.1424 without restraints) Performing minimization step: 2778. Total energy = 7025.4182 kcal/mol (7017.8588 without restraints) Performing minimization step: 2779. Total energy = 7023.1345 kcal/mol (7015.5765 without restraints) Performing minimization step: 2780. Total energy = 7020.8518 kcal/mol (7013.2951 without restraints) Performing minimization step: 2781. Total energy = 7018.5705 kcal/mol (7011.0151 without restraints) Performing minimization step: 2782. Total energy = 7016.2909 kcal/mol (7008.7368 without restraints) Performing minimization step: 2783. Total energy = 7014.0122 kcal/mol (7006.4595 without restraints) Performing minimization step: 2784. Total energy = 7011.7347 kcal/mol (7004.1832 without restraints) Performing minimization step: 2785. Total energy = 7009.4586 kcal/mol (7001.9084 without restraints) Performing minimization step: 2786. Total energy = 7007.1835 kcal/mol (6999.6345 without restraints) Performing minimization step: 2787. Total energy = 7004.9096 kcal/mol (6997.3620 without restraints) Performing minimization step: 2788. Total energy = 7002.6372 kcal/mol (6995.0909 without restraints) Performing minimization step: 2789. Total energy = 7000.3662 kcal/mol (6992.8213 without restraints) Performing minimization step: 2790. Total energy = 6998.0966 kcal/mol (6990.5529 without restraints) Performing minimization step: 2791. Total energy = 6995.8279 kcal/mol (6988.2856 without restraints) Performing minimization step: 2792. Total energy = 6993.5603 kcal/mol (6986.0192 without restraints) Performing minimization step: 2793. Total energy = 6991.2940 kcal/mol (6983.7542 without restraints) Performing minimization step: 2794. Total energy = 6989.0293 kcal/mol (6981.4908 without restraints) Performing minimization step: 2795. Total energy = 6986.7655 kcal/mol (6979.2283 without restraints) Performing minimization step: 2796. Total energy = 6984.5032 kcal/mol (6976.9673 without restraints) Performing minimization step: 2797. Total energy = 6982.2426 kcal/mol (6974.7081 without restraints) Performing minimization step: 2798. Total energy = 6979.9827 kcal/mol (6972.4494 without restraints) Performing minimization step: 2799. Total energy = 6977.7240 kcal/mol (6970.1920 without restraints) Performing minimization step: 2800. Total energy = 6975.4666 kcal/mol (6967.9360 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 6973.2105 kcal/mol (6965.6811 without restraints) Performing minimization step: 2802. Total energy = 6970.9555 kcal/mol (6963.4274 without restraints) Performing minimization step: 2803. Total energy = 6968.7018 kcal/mol (6961.1750 without restraints) Performing minimization step: 2804. Total energy = 6966.4496 kcal/mol (6958.9241 without restraints) Performing minimization step: 2805. Total energy = 6964.1987 kcal/mol (6956.6744 without restraints) Performing minimization step: 2806. Total energy = 6961.9489 kcal/mol (6954.4259 without restraints) Performing minimization step: 2807. Total energy = 6959.7003 kcal/mol (6952.1786 without restraints) Performing minimization step: 2808. Total energy = 6957.4529 kcal/mol (6949.9326 without restraints) Performing minimization step: 2809. Total energy = 6955.2069 kcal/mol (6947.6879 without restraints) Performing minimization step: 2810. Total energy = 6952.9621 kcal/mol (6945.4444 without restraints) Performing minimization step: 2811. Total energy = 6950.7187 kcal/mol (6943.2022 without restraints) Performing minimization step: 2812. Total energy = 6948.4764 kcal/mol (6940.9613 without restraints) Performing minimization step: 2813. Total energy = 6946.2357 kcal/mol (6938.7218 without restraints) Performing minimization step: 2814. Total energy = 6943.9956 kcal/mol (6936.4830 without restraints) Performing minimization step: 2815. Total energy = 6941.7570 kcal/mol (6934.2457 without restraints) Performing minimization step: 2816. Total energy = 6939.5199 kcal/mol (6932.0099 without restraints) Performing minimization step: 2817. Total energy = 6937.2841 kcal/mol (6929.7754 without restraints) Performing minimization step: 2818. Total energy = 6935.0502 kcal/mol (6927.5428 without restraints) Performing minimization step: 2819. Total energy = 6932.8168 kcal/mol (6925.3107 without restraints) Performing minimization step: 2820. Total energy = 6930.5853 kcal/mol (6923.0805 without restraints) Performing minimization step: 2821. Total energy = 6928.3547 kcal/mol (6920.8512 without restraints) Performing minimization step: 2822. Total energy = 6926.1256 kcal/mol (6918.6235 without restraints) Performing minimization step: 2823. Total energy = 6923.8977 kcal/mol (6916.3968 without restraints) Performing minimization step: 2824. Total energy = 6921.6712 kcal/mol (6914.1716 without restraints) Performing minimization step: 2825. Total energy = 6919.4461 kcal/mol (6911.9478 without restraints) Performing minimization step: 2826. Total energy = 6917.2220 kcal/mol (6909.7250 without restraints) Performing minimization step: 2827. Total energy = 6914.9997 kcal/mol (6907.5039 without restraints) Performing minimization step: 2828. Total energy = 6912.7782 kcal/mol (6905.2838 without restraints) Performing minimization step: 2829. Total energy = 6910.5580 kcal/mol (6903.0648 without restraints) Performing minimization step: 2830. Total energy = 6908.3392 kcal/mol (6900.8473 without restraints) Performing minimization step: 2831. Total energy = 6906.1217 kcal/mol (6898.6312 without restraints) Performing minimization step: 2832. Total energy = 6903.9053 kcal/mol (6896.4160 without restraints) Performing minimization step: 2833. Total energy = 6901.6904 kcal/mol (6894.2024 without restraints) Performing minimization step: 2834. Total energy = 6899.4768 kcal/mol (6891.9900 without restraints) Performing minimization step: 2835. Total energy = 6897.2647 kcal/mol (6889.7792 without restraints) Performing minimization step: 2836. Total energy = 6895.0537 kcal/mol (6887.5695 without restraints) Performing minimization step: 2837. Total energy = 6892.8442 kcal/mol (6885.3614 without restraints) Performing minimization step: 2838. Total energy = 6890.6360 kcal/mol (6883.1544 without restraints) Performing minimization step: 2839. Total energy = 6888.4290 kcal/mol (6880.9487 without restraints) Performing minimization step: 2840. Total energy = 6886.2234 kcal/mol (6878.7445 without restraints) Performing minimization step: 2841. Total energy = 6884.0197 kcal/mol (6876.5420 without restraints) Performing minimization step: 2842. Total energy = 6881.8165 kcal/mol (6874.3401 without restraints) Performing minimization step: 2843. Total energy = 6879.6150 kcal/mol (6872.1398 without restraints) Performing minimization step: 2844. Total energy = 6877.4146 kcal/mol (6869.9407 without restraints) Performing minimization step: 2845. Total energy = 6875.2157 kcal/mol (6867.7432 without restraints) Performing minimization step: 2846. Total energy = 6873.0180 kcal/mol (6865.5467 without restraints) Performing minimization step: 2847. Total energy = 6870.8220 kcal/mol (6863.3521 without restraints) Performing minimization step: 2848. Total energy = 6868.6271 kcal/mol (6861.1583 without restraints) Performing minimization step: 2849. Total energy = 6866.4337 kcal/mol (6858.9663 without restraints) Performing minimization step: 2850. Total energy = 6864.2414 kcal/mol (6856.7752 without restraints) Performing minimization step: 2851. Total energy = 6862.0505 kcal/mol (6854.5856 without restraints) Performing minimization step: 2852. Total energy = 6859.8610 kcal/mol (6852.3975 without restraints) Performing minimization step: 2853. Total energy = 6857.6728 kcal/mol (6850.2105 without restraints) Performing minimization step: 2854. Total energy = 6855.4860 kcal/mol (6848.0249 without restraints) Performing minimization step: 2855. Total energy = 6853.3002 kcal/mol (6845.8405 without restraints) Performing minimization step: 2856. Total energy = 6851.1162 kcal/mol (6843.6577 without restraints) Performing minimization step: 2857. Total energy = 6848.9336 kcal/mol (6841.4764 without restraints) Performing minimization step: 2858. Total energy = 6846.7523 kcal/mol (6839.2964 without restraints) Performing minimization step: 2859. Total energy = 6844.5724 kcal/mol (6837.1178 without restraints) Performing minimization step: 2860. Total energy = 6842.3936 kcal/mol (6834.9403 without restraints) Performing minimization step: 2861. Total energy = 6840.2162 kcal/mol (6832.7642 without restraints) Performing minimization step: 2862. Total energy = 6838.0402 kcal/mol (6830.5894 without restraints) Performing minimization step: 2863. Total energy = 6835.8656 kcal/mol (6828.4162 without restraints) Performing minimization step: 2864. Total energy = 6833.6928 kcal/mol (6826.2447 without restraints) Performing minimization step: 2865. Total energy = 6831.5209 kcal/mol (6824.0740 without restraints) Performing minimization step: 2866. Total energy = 6829.3505 kcal/mol (6821.9046 without restraints) Performing minimization step: 2867. Total energy = 6827.1812 kcal/mol (6819.7369 without restraints) Performing minimization step: 2868. Total energy = 6825.0134 kcal/mol (6817.5704 without restraints) Performing minimization step: 2869. Total energy = 6822.8471 kcal/mol (6815.4054 without restraints) Performing minimization step: 2870. Total energy = 6820.6822 kcal/mol (6813.2417 without restraints) Performing minimization step: 2871. Total energy = 6818.5187 kcal/mol (6811.0794 without restraints) Performing minimization step: 2872. Total energy = 6816.3566 kcal/mol (6808.9187 without restraints) Performing minimization step: 2873. Total energy = 6814.1957 kcal/mol (6806.7590 without restraints) Performing minimization step: 2874. Total energy = 6812.0362 kcal/mol (6804.6009 without restraints) Performing minimization step: 2875. Total energy = 6809.8785 kcal/mol (6802.4444 without restraints) Performing minimization step: 2876. Total energy = 6807.7216 kcal/mol (6800.2887 without restraints) Performing minimization step: 2877. Total energy = 6805.5659 kcal/mol (6798.1344 without restraints) Performing minimization step: 2878. Total energy = 6803.4118 kcal/mol (6795.9815 without restraints) Performing minimization step: 2879. Total energy = 6801.2595 kcal/mol (6793.8307 without restraints) Performing minimization step: 2880. Total energy = 6799.1087 kcal/mol (6791.6810 without restraints) Performing minimization step: 2881. Total energy = 6796.9592 kcal/mol (6789.5328 without restraints) Performing minimization step: 2882. Total energy = 6794.8108 kcal/mol (6787.3857 without restraints) Performing minimization step: 2883. Total energy = 6792.6641 kcal/mol (6785.2404 without restraints) Performing minimization step: 2884. Total energy = 6790.5188 kcal/mol (6783.0962 without restraints) Performing minimization step: 2885. Total energy = 6788.3744 kcal/mol (6780.9531 without restraints) Performing minimization step: 2886. Total energy = 6786.2319 kcal/mol (6778.8120 without restraints) Performing minimization step: 2887. Total energy = 6784.0908 kcal/mol (6776.6720 without restraints) Performing minimization step: 2888. Total energy = 6781.9505 kcal/mol (6774.5329 without restraints) Performing minimization step: 2889. Total energy = 6779.8119 kcal/mol (6772.3957 without restraints) Performing minimization step: 2890. Total energy = 6777.6748 kcal/mol (6770.2600 without restraints) Performing minimization step: 2891. Total energy = 6775.5393 kcal/mol (6768.1256 without restraints) Performing minimization step: 2892. Total energy = 6773.4053 kcal/mol (6765.9930 without restraints) Performing minimization step: 2893. Total energy = 6771.2728 kcal/mol (6763.8617 without restraints) Performing minimization step: 2894. Total energy = 6769.1413 kcal/mol (6761.7315 without restraints) Performing minimization step: 2895. Total energy = 6767.0115 kcal/mol (6759.6030 without restraints) Performing minimization step: 2896. Total energy = 6764.8828 kcal/mol (6757.4755 without restraints) Performing minimization step: 2897. Total energy = 6762.7561 kcal/mol (6755.3501 without restraints) Performing minimization step: 2898. Total energy = 6760.6306 kcal/mol (6753.2259 without restraints) Performing minimization step: 2899. Total energy = 6758.5064 kcal/mol (6751.1030 without restraints) Performing minimization step: 2900. Total energy = 6756.3836 kcal/mol (6748.9815 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 6754.2626 kcal/mol (6746.8617 without restraints) Performing minimization step: 2902. Total energy = 6752.1429 kcal/mol (6744.7433 without restraints) Performing minimization step: 2903. Total energy = 6750.0243 kcal/mol (6742.6258 without restraints) Performing minimization step: 2904. Total energy = 6747.9069 kcal/mol (6740.5096 without restraints) Performing minimization step: 2905. Total energy = 6745.7911 kcal/mol (6738.3953 without restraints) Performing minimization step: 2906. Total energy = 6743.6770 kcal/mol (6736.2825 without restraints) Performing minimization step: 2907. Total energy = 6741.5640 kcal/mol (6734.1708 without restraints) Performing minimization step: 2908. Total energy = 6739.4526 kcal/mol (6732.0606 without restraints) Performing minimization step: 2909. Total energy = 6737.3427 kcal/mol (6729.9521 without restraints) Performing minimization step: 2910. Total energy = 6735.2346 kcal/mol (6727.8452 without restraints) Performing minimization step: 2911. Total energy = 6733.1276 kcal/mol (6725.7395 without restraints) Performing minimization step: 2912. Total energy = 6731.0222 kcal/mol (6723.6353 without restraints) Performing minimization step: 2913. Total energy = 6728.9184 kcal/mol (6721.5329 without restraints) Performing minimization step: 2914. Total energy = 6726.8167 kcal/mol (6719.4324 without restraints) Performing minimization step: 2915. Total energy = 6724.7160 kcal/mol (6717.3329 without restraints) Performing minimization step: 2916. Total energy = 6722.6165 kcal/mol (6715.2347 without restraints) Performing minimization step: 2917. Total energy = 6720.5185 kcal/mol (6713.1380 without restraints) Performing minimization step: 2918. Total energy = 6718.4217 kcal/mol (6711.0424 without restraints) Performing minimization step: 2919. Total energy = 6716.3263 kcal/mol (6708.9482 without restraints) Performing minimization step: 2920. Total energy = 6714.2323 kcal/mol (6706.8556 without restraints) Performing minimization step: 2921. Total energy = 6712.1399 kcal/mol (6704.7644 without restraints) Performing minimization step: 2922. Total energy = 6710.0492 kcal/mol (6702.6750 without restraints) Performing minimization step: 2923. Total energy = 6707.9597 kcal/mol (6700.5868 without restraints) Performing minimization step: 2924. Total energy = 6705.8724 kcal/mol (6698.5012 without restraints) Performing minimization step: 2925. Total energy = 6703.7862 kcal/mol (6696.4158 without restraints) Performing minimization step: 2926. Total energy = 6701.7008 kcal/mol (6694.3318 without restraints) Performing minimization step: 2927. Total energy = 6699.6172 kcal/mol (6692.2495 without restraints) Performing minimization step: 2928. Total energy = 6697.5353 kcal/mol (6690.1690 without restraints) Performing minimization step: 2929. Total energy = 6695.4550 kcal/mol (6688.0899 without restraints) Performing minimization step: 2930. Total energy = 6693.3758 kcal/mol (6686.0117 without restraints) Performing minimization step: 2931. Total energy = 6691.2982 kcal/mol (6683.9354 without restraints) Performing minimization step: 2932. Total energy = 6689.2225 kcal/mol (6681.8611 without restraints) Performing minimization step: 2933. Total energy = 6687.1484 kcal/mol (6679.7884 without restraints) Performing minimization step: 2934. Total energy = 6685.0762 kcal/mol (6677.7174 without restraints) Performing minimization step: 2935. Total energy = 6683.0048 kcal/mol (6675.6472 without restraints) Performing minimization step: 2936. Total energy = 6680.9349 kcal/mol (6673.5786 without restraints) Performing minimization step: 2937. Total energy = 6678.8668 kcal/mol (6671.5119 without restraints) Performing minimization step: 2938. Total energy = 6676.8000 kcal/mol (6669.4463 without restraints) Performing minimization step: 2939. Total energy = 6674.7348 kcal/mol (6667.3823 without restraints) Performing minimization step: 2940. Total energy = 6672.6713 kcal/mol (6665.3201 without restraints) Performing minimization step: 2941. Total energy = 6670.6089 kcal/mol (6663.2589 without restraints) Performing minimization step: 2942. Total energy = 6668.5483 kcal/mol (6661.1996 without restraints) Performing minimization step: 2943. Total energy = 6666.4891 kcal/mol (6659.1417 without restraints) Performing minimization step: 2944. Total energy = 6664.4313 kcal/mol (6657.0851 without restraints) Performing minimization step: 2945. Total energy = 6662.3751 kcal/mol (6655.0302 without restraints) Performing minimization step: 2946. Total energy = 6660.3204 kcal/mol (6652.9768 without restraints) Performing minimization step: 2947. Total energy = 6658.2671 kcal/mol (6650.9247 without restraints) Performing minimization step: 2948. Total energy = 6656.2151 kcal/mol (6648.8740 without restraints) Performing minimization step: 2949. Total energy = 6654.1647 kcal/mol (6646.8249 without restraints) Performing minimization step: 2950. Total energy = 6652.1160 kcal/mol (6644.7774 without restraints) Performing minimization step: 2951. Total energy = 6650.0687 kcal/mol (6642.7315 without restraints) Performing minimization step: 2952. Total energy = 6648.0235 kcal/mol (6640.6877 without restraints) Performing minimization step: 2953. Total energy = 6645.9798 kcal/mol (6638.6450 without restraints) Performing minimization step: 2954. Total energy = 6643.9369 kcal/mol (6636.6035 without restraints) Performing minimization step: 2955. Total energy = 6641.8958 kcal/mol (6634.5637 without restraints) Performing minimization step: 2956. Total energy = 6639.8563 kcal/mol (6632.5254 without restraints) Performing minimization step: 2957. Total energy = 6637.8184 kcal/mol (6630.4887 without restraints) Performing minimization step: 2958. Total energy = 6635.7819 kcal/mol (6628.4535 without restraints) Performing minimization step: 2959. Total energy = 6633.7473 kcal/mol (6626.4204 without restraints) Performing minimization step: 2960. Total energy = 6631.7137 kcal/mol (6624.3880 without restraints) Performing minimization step: 2961. Total energy = 6629.6822 kcal/mol (6622.3576 without restraints) Performing minimization step: 2962. Total energy = 6627.6518 kcal/mol (6620.3285 without restraints) Performing minimization step: 2963. Total energy = 6625.6231 kcal/mol (6618.3010 without restraints) Performing minimization step: 2964. Total energy = 6623.5959 kcal/mol (6616.2751 without restraints) Performing minimization step: 2965. Total energy = 6621.5703 kcal/mol (6614.2508 without restraints) Performing minimization step: 2966. Total energy = 6619.5461 kcal/mol (6612.2279 without restraints) Performing minimization step: 2967. Total energy = 6617.5238 kcal/mol (6610.2070 without restraints) Performing minimization step: 2968. Total energy = 6615.5027 kcal/mol (6608.1871 without restraints) Performing minimization step: 2969. Total energy = 6613.4834 kcal/mol (6606.1690 without restraints) Performing minimization step: 2970. Total energy = 6611.4654 kcal/mol (6604.1522 without restraints) Performing minimization step: 2971. Total energy = 6609.4491 kcal/mol (6602.1372 without restraints) Performing minimization step: 2972. Total energy = 6607.4348 kcal/mol (6600.1242 without restraints) Performing minimization step: 2973. Total energy = 6605.4222 kcal/mol (6598.1129 without restraints) Performing minimization step: 2974. Total energy = 6603.4104 kcal/mol (6596.1021 without restraints) Performing minimization step: 2975. Total energy = 6601.4000 kcal/mol (6594.0932 without restraints) Performing minimization step: 2976. Total energy = 6599.3915 kcal/mol (6592.0860 without restraints) Performing minimization step: 2977. Total energy = 6597.3850 kcal/mol (6590.0807 without restraints) Performing minimization step: 2978. Total energy = 6595.3793 kcal/mol (6588.0763 without restraints) Performing minimization step: 2979. Total energy = 6593.3756 kcal/mol (6586.0738 without restraints) Performing minimization step: 2980. Total energy = 6591.3734 kcal/mol (6584.0729 without restraints) Performing minimization step: 2981. Total energy = 6589.3728 kcal/mol (6582.0736 without restraints) Performing minimization step: 2982. Total energy = 6587.3735 kcal/mol (6580.0756 without restraints) Performing minimization step: 2983. Total energy = 6585.3757 kcal/mol (6578.0789 without restraints) Performing minimization step: 2984. Total energy = 6583.3797 kcal/mol (6576.0843 without restraints) Performing minimization step: 2985. Total energy = 6581.3857 kcal/mol (6574.0916 without restraints) Performing minimization step: 2986. Total energy = 6579.3932 kcal/mol (6572.1003 without restraints) Performing minimization step: 2987. Total energy = 6577.4022 kcal/mol (6570.1106 without restraints) Performing minimization step: 2988. Total energy = 6575.4130 kcal/mol (6568.1227 without restraints) Performing minimization step: 2989. Total energy = 6573.4258 kcal/mol (6566.1367 without restraints) Performing minimization step: 2990. Total energy = 6571.4392 kcal/mol (6564.1514 without restraints) Performing minimization step: 2991. Total energy = 6569.4545 kcal/mol (6562.1680 without restraints) Performing minimization step: 2992. Total energy = 6567.4711 kcal/mol (6560.1859 without restraints) Performing minimization step: 2993. Total energy = 6565.4895 kcal/mol (6558.2055 without restraints) Performing minimization step: 2994. Total energy = 6563.5097 kcal/mol (6556.2270 without restraints) Performing minimization step: 2995. Total energy = 6561.5313 kcal/mol (6554.2499 without restraints) Performing minimization step: 2996. Total energy = 6559.5546 kcal/mol (6552.2744 without restraints) Performing minimization step: 2997. Total energy = 6557.5794 kcal/mol (6550.3004 without restraints) Performing minimization step: 2998. Total energy = 6555.6058 kcal/mol (6548.3281 without restraints) Performing minimization step: 2999. Total energy = 6553.6340 kcal/mol (6546.3576 without restraints) Performing minimization step: 3000. Total energy = 6551.6637 kcal/mol (6544.3885 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 6549.6952 kcal/mol (6542.4213 without restraints) Performing minimization step: 3002. Total energy = 6547.7283 kcal/mol (6540.4557 without restraints) Performing minimization step: 3003. Total energy = 6545.7632 kcal/mol (6538.4918 without restraints) Performing minimization step: 3004. Total energy = 6543.7992 kcal/mol (6536.5291 without restraints) Performing minimization step: 3005. Total energy = 6541.8368 kcal/mol (6534.5678 without restraints) Performing minimization step: 3006. Total energy = 6539.8760 kcal/mol (6532.6084 without restraints) Performing minimization step: 3007. Total energy = 6537.9169 kcal/mol (6530.6506 without restraints) Performing minimization step: 3008. Total energy = 6535.9594 kcal/mol (6528.6944 without restraints) Performing minimization step: 3009. Total energy = 6534.0037 kcal/mol (6526.7400 without restraints) Performing minimization step: 3010. Total energy = 6532.0495 kcal/mol (6524.7870 without restraints) Performing minimization step: 3011. Total energy = 6530.0968 kcal/mol (6522.8355 without restraints) Performing minimization step: 3012. Total energy = 6528.1457 kcal/mol (6520.8857 without restraints) Performing minimization step: 3013. Total energy = 6526.1965 kcal/mol (6518.9378 without restraints) Performing minimization step: 3014. Total energy = 6524.2491 kcal/mol (6516.9917 without restraints) Performing minimization step: 3015. Total energy = 6522.3030 kcal/mol (6515.0468 without restraints) Performing minimization step: 3016. Total energy = 6520.3588 kcal/mol (6513.1038 without restraints) Performing minimization step: 3017. Total energy = 6518.4154 kcal/mol (6511.1618 without restraints) Performing minimization step: 3018. Total energy = 6516.4742 kcal/mol (6509.2218 without restraints) Performing minimization step: 3019. Total energy = 6514.5346 kcal/mol (6507.2835 without restraints) Performing minimization step: 3020. Total energy = 6512.5966 kcal/mol (6505.3467 without restraints) Performing minimization step: 3021. Total energy = 6510.6606 kcal/mol (6503.4120 without restraints) Performing minimization step: 3022. Total energy = 6508.7258 kcal/mol (6501.4785 without restraints) Performing minimization step: 3023. Total energy = 6506.7929 kcal/mol (6499.5468 without restraints) Performing minimization step: 3024. Total energy = 6504.8618 kcal/mol (6497.6170 without restraints) Performing minimization step: 3025. Total energy = 6502.9320 kcal/mol (6495.6886 without restraints) Performing minimization step: 3026. Total energy = 6501.0040 kcal/mol (6493.7618 without restraints) Performing minimization step: 3027. Total energy = 6499.0777 kcal/mol (6491.8367 without restraints) Performing minimization step: 3028. Total energy = 6497.1531 kcal/mol (6489.9133 without restraints) Performing minimization step: 3029. Total energy = 6495.2295 kcal/mol (6487.9913 without restraints) Performing minimization step: 3030. Total energy = 6493.3081 kcal/mol (6486.0709 without restraints) Performing minimization step: 3031. Total energy = 6491.3880 kcal/mol (6484.1520 without restraints) Performing minimization step: 3032. Total energy = 6489.4695 kcal/mol (6482.2348 without restraints) Performing minimization step: 3033. Total energy = 6487.5527 kcal/mol (6480.3193 without restraints) Performing minimization step: 3034. Total energy = 6485.6378 kcal/mol (6478.4056 without restraints) Performing minimization step: 3035. Total energy = 6483.7244 kcal/mol (6476.4935 without restraints) Performing minimization step: 3036. Total energy = 6481.8127 kcal/mol (6474.5831 without restraints) Performing minimization step: 3037. Total energy = 6479.9026 kcal/mol (6472.6741 without restraints) Performing minimization step: 3038. Total energy = 6477.9939 kcal/mol (6470.7666 without restraints) Performing minimization step: 3039. Total energy = 6476.0868 kcal/mol (6468.8608 without restraints) Performing minimization step: 3040. Total energy = 6474.1814 kcal/mol (6466.9568 without restraints) Performing minimization step: 3041. Total energy = 6472.2781 kcal/mol (6465.0549 without restraints) Performing minimization step: 3042. Total energy = 6470.3765 kcal/mol (6463.1543 without restraints) Performing minimization step: 3043. Total energy = 6468.4761 kcal/mol (6461.2554 without restraints) Performing minimization step: 3044. Total energy = 6466.5778 kcal/mol (6459.3582 without restraints) Performing minimization step: 3045. Total energy = 6464.6808 kcal/mol (6457.4625 without restraints) Performing minimization step: 3046. Total energy = 6462.7857 kcal/mol (6455.5687 without restraints) Performing minimization step: 3047. Total energy = 6460.8921 kcal/mol (6453.6765 without restraints) Performing minimization step: 3048. Total energy = 6459.0002 kcal/mol (6451.7857 without restraints) Performing minimization step: 3049. Total energy = 6457.1098 kcal/mol (6449.8965 without restraints) Performing minimization step: 3050. Total energy = 6455.2211 kcal/mol (6448.0091 without restraints) Performing minimization step: 3051. Total energy = 6453.3338 kcal/mol (6446.1231 without restraints) Performing minimization step: 3052. Total energy = 6451.4491 kcal/mol (6444.2396 without restraints) Performing minimization step: 3053. Total energy = 6449.5661 kcal/mol (6442.3579 without restraints) Performing minimization step: 3054. Total energy = 6447.6842 kcal/mol (6440.4772 without restraints) Performing minimization step: 3055. Total energy = 6445.8038 kcal/mol (6438.5981 without restraints) Performing minimization step: 3056. Total energy = 6443.9251 kcal/mol (6436.7207 without restraints) Performing minimization step: 3057. Total energy = 6442.0481 kcal/mol (6434.8449 without restraints) Performing minimization step: 3058. Total energy = 6440.1732 kcal/mol (6432.9712 without restraints) Performing minimization step: 3059. Total energy = 6438.2996 kcal/mol (6431.0989 without restraints) Performing minimization step: 3060. Total energy = 6436.4275 kcal/mol (6429.2281 without restraints) Performing minimization step: 3061. Total energy = 6434.5570 kcal/mol (6427.3588 without restraints) Performing minimization step: 3062. Total energy = 6432.6882 kcal/mol (6425.4913 without restraints) Performing minimization step: 3063. Total energy = 6430.8212 kcal/mol (6423.6256 without restraints) Performing minimization step: 3064. Total energy = 6428.9558 kcal/mol (6421.7614 without restraints) Performing minimization step: 3065. Total energy = 6427.0926 kcal/mol (6419.8995 without restraints) Performing minimization step: 3066. Total energy = 6425.2305 kcal/mol (6418.0386 without restraints) Performing minimization step: 3067. Total energy = 6423.3701 kcal/mol (6416.1796 without restraints) Performing minimization step: 3068. Total energy = 6421.5111 kcal/mol (6414.3217 without restraints) Performing minimization step: 3069. Total energy = 6419.6541 kcal/mol (6412.4660 without restraints) Performing minimization step: 3070. Total energy = 6417.7991 kcal/mol (6410.6122 without restraints) Performing minimization step: 3071. Total energy = 6415.9456 kcal/mol (6408.7603 without restraints) Performing minimization step: 3072. Total energy = 6414.0942 kcal/mol (6406.9099 without restraints) Performing minimization step: 3073. Total energy = 6412.2438 kcal/mol (6405.0608 without restraints) Performing minimization step: 3074. Total energy = 6410.3953 kcal/mol (6403.2134 without restraints) Performing minimization step: 3075. Total energy = 6408.5488 kcal/mol (6401.3683 without restraints) Performing minimization step: 3076. Total energy = 6406.7034 kcal/mol (6399.5241 without restraints) Performing minimization step: 3077. Total energy = 6404.8601 kcal/mol (6397.6821 without restraints) Performing minimization step: 3078. Total energy = 6403.0183 kcal/mol (6395.8416 without restraints) Performing minimization step: 3079. Total energy = 6401.1778 kcal/mol (6394.0023 without restraints) Performing minimization step: 3080. Total energy = 6399.3391 kcal/mol (6392.1648 without restraints) Performing minimization step: 3081. Total energy = 6397.5022 kcal/mol (6390.3292 without restraints) Performing minimization step: 3082. Total energy = 6395.6668 kcal/mol (6388.4950 without restraints) Performing minimization step: 3083. Total energy = 6393.8333 kcal/mol (6386.6628 without restraints) Performing minimization step: 3084. Total energy = 6392.0013 kcal/mol (6384.8320 without restraints) Performing minimization step: 3085. Total energy = 6390.1709 kcal/mol (6383.0029 without restraints) Performing minimization step: 3086. Total energy = 6388.3425 kcal/mol (6381.1758 without restraints) Performing minimization step: 3087. Total energy = 6386.5159 kcal/mol (6379.3503 without restraints) Performing minimization step: 3088. Total energy = 6384.6907 kcal/mol (6377.5265 without restraints) Performing minimization step: 3089. Total energy = 6382.8669 kcal/mol (6375.7039 without restraints) Performing minimization step: 3090. Total energy = 6381.0446 kcal/mol (6373.8829 without restraints) Performing minimization step: 3091. Total energy = 6379.2246 kcal/mol (6372.0641 without restraints) Performing minimization step: 3092. Total energy = 6377.4059 kcal/mol (6370.2467 without restraints) Performing minimization step: 3093. Total energy = 6375.5894 kcal/mol (6368.4314 without restraints) Performing minimization step: 3094. Total energy = 6373.7743 kcal/mol (6366.6176 without restraints) Performing minimization step: 3095. Total energy = 6371.9609 kcal/mol (6364.8055 without restraints) Performing minimization step: 3096. Total energy = 6370.1489 kcal/mol (6362.9947 without restraints) Performing minimization step: 3097. Total energy = 6368.3386 kcal/mol (6361.1857 without restraints) Performing minimization step: 3098. Total energy = 6366.5303 kcal/mol (6359.3786 without restraints) Performing minimization step: 3099. Total energy = 6364.7236 kcal/mol (6357.5731 without restraints) Performing minimization step: 3100. Total energy = 6362.9186 kcal/mol (6355.7694 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 6361.1153 kcal/mol (6353.9676 without restraints) Performing minimization step: 3102. Total energy = 6359.3137 kcal/mol (6352.1670 without restraints) Performing minimization step: 3103. Total energy = 6357.5138 kcal/mol (6350.3683 without restraints) Performing minimization step: 3104. Total energy = 6355.7153 kcal/mol (6348.5713 without restraints) Performing minimization step: 3105. Total energy = 6353.9189 kcal/mol (6346.7760 without restraints) Performing minimization step: 3106. Total energy = 6352.1240 kcal/mol (6344.9825 without restraints) Performing minimization step: 3107. Total energy = 6350.3308 kcal/mol (6343.1903 without restraints) Performing minimization step: 3108. Total energy = 6348.5390 kcal/mol (6341.3998 without restraints) Performing minimization step: 3109. Total energy = 6346.7490 kcal/mol (6339.6112 without restraints) Performing minimization step: 3110. Total energy = 6344.9606 kcal/mol (6337.8240 without restraints) Performing minimization step: 3111. Total energy = 6343.1742 kcal/mol (6336.0387 without restraints) Performing minimization step: 3112. Total energy = 6341.3892 kcal/mol (6334.2550 without restraints) Performing minimization step: 3113. Total energy = 6339.6059 kcal/mol (6332.4731 without restraints) Performing minimization step: 3114. Total energy = 6337.8241 kcal/mol (6330.6924 without restraints) Performing minimization step: 3115. Total energy = 6336.0439 kcal/mol (6328.9135 without restraints) Performing minimization step: 3116. Total energy = 6334.2656 kcal/mol (6327.1364 without restraints) Performing minimization step: 3117. Total energy = 6332.4893 kcal/mol (6325.3614 without restraints) Performing minimization step: 3118. Total energy = 6330.7144 kcal/mol (6323.5877 without restraints) Performing minimization step: 3119. Total energy = 6328.9412 kcal/mol (6321.8158 without restraints) Performing minimization step: 3120. Total energy = 6327.1697 kcal/mol (6320.0455 without restraints) Performing minimization step: 3121. Total energy = 6325.4001 kcal/mol (6318.2772 without restraints) Performing minimization step: 3122. Total energy = 6323.6318 kcal/mol (6316.5101 without restraints) Performing minimization step: 3123. Total energy = 6321.8649 kcal/mol (6314.7445 without restraints) Performing minimization step: 3124. Total energy = 6320.1005 kcal/mol (6312.9813 without restraints) Performing minimization step: 3125. Total energy = 6318.3370 kcal/mol (6311.2191 without restraints) Performing minimization step: 3126. Total energy = 6316.5754 kcal/mol (6309.4588 without restraints) Performing minimization step: 3127. Total energy = 6314.8156 kcal/mol (6307.7002 without restraints) Performing minimization step: 3128. Total energy = 6313.0576 kcal/mol (6305.9435 without restraints) Performing minimization step: 3129. Total energy = 6311.3012 kcal/mol (6304.1882 without restraints) Performing minimization step: 3130. Total energy = 6309.5463 kcal/mol (6302.4347 without restraints) Performing minimization step: 3131. Total energy = 6307.7934 kcal/mol (6300.6830 without restraints) Performing minimization step: 3132. Total energy = 6306.0419 kcal/mol (6298.9327 without restraints) Performing minimization step: 3133. Total energy = 6304.2922 kcal/mol (6297.1845 without restraints) Performing minimization step: 3134. Total energy = 6302.5443 kcal/mol (6295.4375 without restraints) Performing minimization step: 3135. Total energy = 6300.7977 kcal/mol (6293.6923 without restraints) Performing minimization step: 3136. Total energy = 6299.0529 kcal/mol (6291.9487 without restraints) Performing minimization step: 3137. Total energy = 6297.3098 kcal/mol (6290.2068 without restraints) Performing minimization step: 3138. Total energy = 6295.5683 kcal/mol (6288.4666 without restraints) Performing minimization step: 3139. Total energy = 6293.8288 kcal/mol (6286.7284 without restraints) Performing minimization step: 3140. Total energy = 6292.0908 kcal/mol (6284.9916 without restraints) Performing minimization step: 3141. Total energy = 6290.3542 kcal/mol (6283.2562 without restraints) Performing minimization step: 3142. Total energy = 6288.6194 kcal/mol (6281.5227 without restraints) Performing minimization step: 3143. Total energy = 6286.8863 kcal/mol (6279.7909 without restraints) Performing minimization step: 3144. Total energy = 6285.1554 kcal/mol (6278.0614 without restraints) Performing minimization step: 3145. Total energy = 6283.4261 kcal/mol (6276.3331 without restraints) Performing minimization step: 3146. Total energy = 6281.6981 kcal/mol (6274.6063 without restraints) Performing minimization step: 3147. Total energy = 6279.9716 kcal/mol (6272.8811 without restraints) Performing minimization step: 3148. Total energy = 6278.2474 kcal/mol (6271.1582 without restraints) Performing minimization step: 3149. Total energy = 6276.5245 kcal/mol (6269.4366 without restraints) Performing minimization step: 3150. Total energy = 6274.8034 kcal/mol (6267.7169 without restraints) Performing minimization step: 3151. Total energy = 6273.0838 kcal/mol (6265.9984 without restraints) Performing minimization step: 3152. Total energy = 6271.3662 kcal/mol (6264.2820 without restraints) Performing minimization step: 3153. Total energy = 6269.6501 kcal/mol (6262.5670 without restraints) Performing minimization step: 3154. Total energy = 6267.9354 kcal/mol (6260.8536 without restraints) Performing minimization step: 3155. Total energy = 6266.2224 kcal/mol (6259.1419 without restraints) Performing minimization step: 3156. Total energy = 6264.5110 kcal/mol (6257.4317 without restraints) Performing minimization step: 3157. Total energy = 6262.8011 kcal/mol (6255.7230 without restraints) Performing minimization step: 3158. Total energy = 6261.0930 kcal/mol (6254.0162 without restraints) Performing minimization step: 3159. Total energy = 6259.3867 kcal/mol (6252.3110 without restraints) Performing minimization step: 3160. Total energy = 6257.6821 kcal/mol (6250.6077 without restraints) Performing minimization step: 3161. Total energy = 6255.9792 kcal/mol (6248.9061 without restraints) Performing minimization step: 3162. Total energy = 6254.2781 kcal/mol (6247.2062 without restraints) Performing minimization step: 3163. Total energy = 6252.5785 kcal/mol (6245.5078 without restraints) Performing minimization step: 3164. Total energy = 6250.8806 kcal/mol (6243.8112 without restraints) Performing minimization step: 3165. Total energy = 6249.1844 kcal/mol (6242.1162 without restraints) Performing minimization step: 3166. Total energy = 6247.4896 kcal/mol (6240.4227 without restraints) Performing minimization step: 3167. Total energy = 6245.7960 kcal/mol (6238.7303 without restraints) Performing minimization step: 3168. Total energy = 6244.1046 kcal/mol (6237.0402 without restraints) Performing minimization step: 3169. Total energy = 6242.4152 kcal/mol (6235.3522 without restraints) Performing minimization step: 3170. Total energy = 6240.7272 kcal/mol (6233.6652 without restraints) Performing minimization step: 3171. Total energy = 6239.0409 kcal/mol (6231.9802 without restraints) Performing minimization step: 3172. Total energy = 6237.3564 kcal/mol (6230.2970 without restraints) Performing minimization step: 3173. Total energy = 6235.6732 kcal/mol (6228.6148 without restraints) Performing minimization step: 3174. Total energy = 6233.9916 kcal/mol (6226.9346 without restraints) Performing minimization step: 3175. Total energy = 6232.3116 kcal/mol (6225.2556 without restraints) Performing minimization step: 3176. Total energy = 6230.6332 kcal/mol (6223.5786 without restraints) Performing minimization step: 3177. Total energy = 6228.9568 kcal/mol (6221.9035 without restraints) Performing minimization step: 3178. Total energy = 6227.2822 kcal/mol (6220.2301 without restraints) Performing minimization step: 3179. Total energy = 6225.6090 kcal/mol (6218.5583 without restraints) Performing minimization step: 3180. Total energy = 6223.9377 kcal/mol (6216.8882 without restraints) Performing minimization step: 3181. Total energy = 6222.2679 kcal/mol (6215.2196 without restraints) Performing minimization step: 3182. Total energy = 6220.5996 kcal/mol (6213.5525 without restraints) Performing minimization step: 3183. Total energy = 6218.9330 kcal/mol (6211.8871 without restraints) Performing minimization step: 3184. Total energy = 6217.2681 kcal/mol (6210.2235 without restraints) Performing minimization step: 3185. Total energy = 6215.6047 kcal/mol (6208.5613 without restraints) Performing minimization step: 3186. Total energy = 6213.9429 kcal/mol (6206.9009 without restraints) Performing minimization step: 3187. Total energy = 6212.2830 kcal/mol (6205.2422 without restraints) Performing minimization step: 3188. Total energy = 6210.6243 kcal/mol (6203.5847 without restraints) Performing minimization step: 3189. Total energy = 6208.9676 kcal/mol (6201.9291 without restraints) Performing minimization step: 3190. Total energy = 6207.3125 kcal/mol (6200.2754 without restraints) Performing minimization step: 3191. Total energy = 6205.6591 kcal/mol (6198.6231 without restraints) Performing minimization step: 3192. Total energy = 6204.0073 kcal/mol (6196.9725 without restraints) Performing minimization step: 3193. Total energy = 6202.3571 kcal/mol (6195.3236 without restraints) Performing minimization step: 3194. Total energy = 6200.7087 kcal/mol (6193.6764 without restraints) Performing minimization step: 3195. Total energy = 6199.0617 kcal/mol (6192.0306 without restraints) Performing minimization step: 3196. Total energy = 6197.4167 kcal/mol (6190.3869 without restraints) Performing minimization step: 3197. Total energy = 6195.7730 kcal/mol (6188.7444 without restraints) Performing minimization step: 3198. Total energy = 6194.1309 kcal/mol (6187.1035 without restraints) Performing minimization step: 3199. Total energy = 6192.4903 kcal/mol (6185.4642 without restraints) Performing minimization step: 3200. Total energy = 6190.8516 kcal/mol (6183.8267 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 6189.2145 kcal/mol (6182.1909 without restraints) Performing minimization step: 3202. Total energy = 6187.5791 kcal/mol (6180.5566 without restraints) Performing minimization step: 3203. Total energy = 6185.9454 kcal/mol (6178.9241 without restraints) Performing minimization step: 3204. Total energy = 6184.3129 kcal/mol (6177.2929 without restraints) Performing minimization step: 3205. Total energy = 6182.6822 kcal/mol (6175.6633 without restraints) Performing minimization step: 3206. Total energy = 6181.0529 kcal/mol (6174.0353 without restraints) Performing minimization step: 3207. Total energy = 6179.4253 kcal/mol (6172.4090 without restraints) Performing minimization step: 3208. Total energy = 6177.7995 kcal/mol (6170.7844 without restraints) Performing minimization step: 3209. Total energy = 6176.1753 kcal/mol (6169.1614 without restraints) Performing minimization step: 3210. Total energy = 6174.5527 kcal/mol (6167.5401 without restraints) Performing minimization step: 3211. Total energy = 6172.9317 kcal/mol (6165.9203 without restraints) Performing minimization step: 3212. Total energy = 6171.3123 kcal/mol (6164.3021 without restraints) Performing minimization step: 3213. Total energy = 6169.6945 kcal/mol (6162.6856 without restraints) Performing minimization step: 3214. Total energy = 6168.0784 kcal/mol (6161.0706 without restraints) Performing minimization step: 3215. Total energy = 6166.4640 kcal/mol (6159.4575 without restraints) Performing minimization step: 3216. Total energy = 6164.8511 kcal/mol (6157.8458 without restraints) Performing minimization step: 3217. Total energy = 6163.2400 kcal/mol (6156.2359 without restraints) Performing minimization step: 3218. Total energy = 6161.6301 kcal/mol (6154.6272 without restraints) Performing minimization step: 3219. Total energy = 6160.0226 kcal/mol (6153.0211 without restraints) Performing minimization step: 3220. Total energy = 6158.4162 kcal/mol (6151.4158 without restraints) Performing minimization step: 3221. Total energy = 6156.8115 kcal/mol (6149.8123 without restraints) Performing minimization step: 3222. Total energy = 6155.2080 kcal/mol (6148.2101 without restraints) Performing minimization step: 3223. Total energy = 6153.6059 kcal/mol (6146.6090 without restraints) Performing minimization step: 3224. Total energy = 6152.0057 kcal/mol (6145.0101 without restraints) Performing minimization step: 3225. Total energy = 6150.4071 kcal/mol (6143.4127 without restraints) Performing minimization step: 3226. Total energy = 6148.8101 kcal/mol (6141.8170 without restraints) Performing minimization step: 3227. Total energy = 6147.2148 kcal/mol (6140.2230 without restraints) Performing minimization step: 3228. Total energy = 6145.6212 kcal/mol (6138.6306 without restraints) Performing minimization step: 3229. Total energy = 6144.0296 kcal/mol (6137.0401 without restraints) Performing minimization step: 3230. Total energy = 6142.4391 kcal/mol (6135.4508 without restraints) Performing minimization step: 3231. Total energy = 6140.8496 kcal/mol (6133.8627 without restraints) Performing minimization step: 3232. Total energy = 6139.2623 kcal/mol (6132.2765 without restraints) Performing minimization step: 3233. Total energy = 6137.6766 kcal/mol (6130.6920 without restraints) Performing minimization step: 3234. Total energy = 6136.0924 kcal/mol (6129.1090 without restraints) Performing minimization step: 3235. Total energy = 6134.5101 kcal/mol (6127.5281 without restraints) Performing minimization step: 3236. Total energy = 6132.9292 kcal/mol (6125.9483 without restraints) Performing minimization step: 3237. Total energy = 6131.3498 kcal/mol (6124.3701 without restraints) Performing minimization step: 3238. Total energy = 6129.7721 kcal/mol (6122.7937 without restraints) Performing minimization step: 3239. Total energy = 6128.1960 kcal/mol (6121.2188 without restraints) Performing minimization step: 3240. Total energy = 6126.6214 kcal/mol (6119.6453 without restraints) Performing minimization step: 3241. Total energy = 6125.0483 kcal/mol (6118.0735 without restraints) Performing minimization step: 3242. Total energy = 6123.4771 kcal/mol (6116.5035 without restraints) Performing minimization step: 3243. Total energy = 6121.9071 kcal/mol (6114.9347 without restraints) Performing minimization step: 3244. Total energy = 6120.3386 kcal/mol (6113.3676 without restraints) Performing minimization step: 3245. Total energy = 6118.7723 kcal/mol (6111.8023 without restraints) Performing minimization step: 3246. Total energy = 6117.2073 kcal/mol (6110.2386 without restraints) Performing minimization step: 3247. Total energy = 6115.6439 kcal/mol (6108.6763 without restraints) Performing minimization step: 3248. Total energy = 6114.0817 kcal/mol (6107.1154 without restraints) Performing minimization step: 3249. Total energy = 6112.5209 kcal/mol (6105.5558 without restraints) Performing minimization step: 3250. Total energy = 6110.9620 kcal/mol (6103.9981 without restraints) Performing minimization step: 3251. Total energy = 6109.4045 kcal/mol (6102.4419 without restraints) Performing minimization step: 3252. Total energy = 6107.8487 kcal/mol (6100.8872 without restraints) Performing minimization step: 3253. Total energy = 6106.2948 kcal/mol (6099.3347 without restraints) Performing minimization step: 3254. Total energy = 6104.7422 kcal/mol (6097.7831 without restraints) Performing minimization step: 3255. Total energy = 6103.1916 kcal/mol (6096.2340 without restraints) Performing minimization step: 3256. Total energy = 6101.6424 kcal/mol (6094.6858 without restraints) Performing minimization step: 3257. Total energy = 6100.0944 kcal/mol (6093.1390 without restraints) Performing minimization step: 3258. Total energy = 6098.5481 kcal/mol (6091.5939 without restraints) Performing minimization step: 3259. Total energy = 6097.0033 kcal/mol (6090.0503 without restraints) Performing minimization step: 3260. Total energy = 6095.4597 kcal/mol (6088.5080 without restraints) Performing minimization step: 3261. Total energy = 6093.9179 kcal/mol (6086.9673 without restraints) Performing minimization step: 3262. Total energy = 6092.3774 kcal/mol (6085.4280 without restraints) Performing minimization step: 3263. Total energy = 6090.8385 kcal/mol (6083.8904 without restraints) Performing minimization step: 3264. Total energy = 6089.3013 kcal/mol (6082.3543 without restraints) Performing minimization step: 3265. Total energy = 6087.7659 kcal/mol (6080.8202 without restraints) Performing minimization step: 3266. Total energy = 6086.2318 kcal/mol (6079.2872 without restraints) Performing minimization step: 3267. Total energy = 6084.6993 kcal/mol (6077.7560 without restraints) Performing minimization step: 3268. Total energy = 6083.1682 kcal/mol (6076.2261 without restraints) Performing minimization step: 3269. Total energy = 6081.6388 kcal/mol (6074.6979 without restraints) Performing minimization step: 3270. Total energy = 6080.1109 kcal/mol (6073.1711 without restraints) Performing minimization step: 3271. Total energy = 6078.5844 kcal/mol (6071.6458 without restraints) Performing minimization step: 3272. Total energy = 6077.0595 kcal/mol (6070.1222 without restraints) Performing minimization step: 3273. Total energy = 6075.5361 kcal/mol (6068.5999 without restraints) Performing minimization step: 3274. Total energy = 6074.0141 kcal/mol (6067.0792 without restraints) Performing minimization step: 3275. Total energy = 6072.4937 kcal/mol (6065.5599 without restraints) Performing minimization step: 3276. Total energy = 6070.9748 kcal/mol (6064.0423 without restraints) Performing minimization step: 3277. Total energy = 6069.4579 kcal/mol (6062.5266 without restraints) Performing minimization step: 3278. Total energy = 6067.9421 kcal/mol (6061.0119 without restraints) Performing minimization step: 3279. Total energy = 6066.4277 kcal/mol (6059.4988 without restraints) Performing minimization step: 3280. Total energy = 6064.9146 kcal/mol (6057.9869 without restraints) Performing minimization step: 3281. Total energy = 6063.4034 kcal/mol (6056.4769 without restraints) Performing minimization step: 3282. Total energy = 6061.8942 kcal/mol (6054.9692 without restraints) Performing minimization step: 3283. Total energy = 6060.3862 kcal/mol (6053.4621 without restraints) Performing minimization step: 3284. Total energy = 6058.8795 kcal/mol (6051.9567 without restraints) Performing minimization step: 3285. Total energy = 6057.3743 kcal/mol (6050.4526 without restraints) Performing minimization step: 3286. Total energy = 6055.8705 kcal/mol (6048.9500 without restraints) Performing minimization step: 3287. Total energy = 6054.3686 kcal/mol (6047.4494 without restraints) Performing minimization step: 3288. Total energy = 6052.8680 kcal/mol (6045.9500 without restraints) Performing minimization step: 3289. Total energy = 6051.3694 kcal/mol (6044.4525 without restraints) Performing minimization step: 3290. Total energy = 6049.8715 kcal/mol (6042.9557 without restraints) Performing minimization step: 3291. Total energy = 6048.3751 kcal/mol (6041.4606 without restraints) Performing minimization step: 3292. Total energy = 6046.8805 kcal/mol (6039.9672 without restraints) Performing minimization step: 3293. Total energy = 6045.3870 kcal/mol (6038.4748 without restraints) Performing minimization step: 3294. Total energy = 6043.8954 kcal/mol (6036.9844 without restraints) Performing minimization step: 3295. Total energy = 6042.4053 kcal/mol (6035.4957 without restraints) Performing minimization step: 3296. Total energy = 6040.9166 kcal/mol (6034.0080 without restraints) Performing minimization step: 3297. Total energy = 6039.4294 kcal/mol (6032.5220 without restraints) Performing minimization step: 3298. Total energy = 6037.9437 kcal/mol (6031.0374 without restraints) Performing minimization step: 3299. Total energy = 6036.4592 kcal/mol (6029.5542 without restraints) Performing minimization step: 3300. Total energy = 6034.9762 kcal/mol (6028.0723 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 6033.4945 kcal/mol (6026.5918 without restraints) Performing minimization step: 3302. Total energy = 6032.0144 kcal/mol (6025.1129 without restraints) Performing minimization step: 3303. Total energy = 6030.5363 kcal/mol (6023.6360 without restraints) Performing minimization step: 3304. Total energy = 6029.0591 kcal/mol (6022.1600 without restraints) Performing minimization step: 3305. Total energy = 6027.5835 kcal/mol (6020.6856 without restraints) Performing minimization step: 3306. Total energy = 6026.1095 kcal/mol (6019.2128 without restraints) Performing minimization step: 3307. Total energy = 6024.6371 kcal/mol (6017.7415 without restraints) Performing minimization step: 3308. Total energy = 6023.1659 kcal/mol (6016.2715 without restraints) Performing minimization step: 3309. Total energy = 6021.6961 kcal/mol (6014.8029 without restraints) Performing minimization step: 3310. Total energy = 6020.2277 kcal/mol (6013.3357 without restraints) Performing minimization step: 3311. Total energy = 6018.7608 kcal/mol (6011.8700 without restraints) Performing minimization step: 3312. Total energy = 6017.2956 kcal/mol (6010.4060 without restraints) Performing minimization step: 3313. Total energy = 6015.8319 kcal/mol (6008.9436 without restraints) Performing minimization step: 3314. Total energy = 6014.3696 kcal/mol (6007.4824 without restraints) Performing minimization step: 3315. Total energy = 6012.9085 kcal/mol (6006.0225 without restraints) Performing minimization step: 3316. Total energy = 6011.4493 kcal/mol (6004.5646 without restraints) Performing minimization step: 3317. Total energy = 6009.9916 kcal/mol (6003.1079 without restraints) Performing minimization step: 3318. Total energy = 6008.5350 kcal/mol (6001.6527 without restraints) Performing minimization step: 3319. Total energy = 6007.0805 kcal/mol (6000.1992 without restraints) Performing minimization step: 3320. Total energy = 6005.6267 kcal/mol (5998.7466 without restraints) Performing minimization step: 3321. Total energy = 6004.1744 kcal/mol (5997.2954 without restraints) Performing minimization step: 3322. Total energy = 6002.7235 kcal/mol (5995.8457 without restraints) Performing minimization step: 3323. Total energy = 6001.2742 kcal/mol (5994.3976 without restraints) Performing minimization step: 3324. Total energy = 5999.8260 kcal/mol (5992.9506 without restraints) Performing minimization step: 3325. Total energy = 5998.3795 kcal/mol (5991.5052 without restraints) Performing minimization step: 3326. Total energy = 5996.9346 kcal/mol (5990.0616 without restraints) Performing minimization step: 3327. Total energy = 5995.4904 kcal/mol (5988.6185 without restraints) Performing minimization step: 3328. Total energy = 5994.0477 kcal/mol (5987.1770 without restraints) Performing minimization step: 3329. Total energy = 5992.6071 kcal/mol (5985.7376 without restraints) Performing minimization step: 3330. Total energy = 5991.1674 kcal/mol (5984.2991 without restraints) Performing minimization step: 3331. Total energy = 5989.7292 kcal/mol (5982.8620 without restraints) Performing minimization step: 3332. Total energy = 5988.2930 kcal/mol (5981.4269 without restraints) Performing minimization step: 3333. Total energy = 5986.8578 kcal/mol (5979.9929 without restraints) Performing minimization step: 3334. Total energy = 5985.4243 kcal/mol (5978.5607 without restraints) Performing minimization step: 3335. Total energy = 5983.9918 kcal/mol (5977.1293 without restraints) Performing minimization step: 3336. Total energy = 5982.5607 kcal/mol (5975.6994 without restraints) Performing minimization step: 3337. Total energy = 5981.1314 kcal/mol (5974.2713 without restraints) Performing minimization step: 3338. Total energy = 5979.7034 kcal/mol (5972.8445 without restraints) Performing minimization step: 3339. Total energy = 5978.2769 kcal/mol (5971.4191 without restraints) Performing minimization step: 3340. Total energy = 5976.8512 kcal/mol (5969.9946 without restraints) Performing minimization step: 3341. Total energy = 5975.4273 kcal/mol (5968.5719 without restraints) Performing minimization step: 3342. Total energy = 5974.0046 kcal/mol (5967.1503 without restraints) Performing minimization step: 3343. Total energy = 5972.5838 kcal/mol (5965.7306 without restraints) Performing minimization step: 3344. Total energy = 5971.1644 kcal/mol (5964.3127 without restraints) Performing minimization step: 3345. Total energy = 5969.7461 kcal/mol (5962.8953 without restraints) Performing minimization step: 3346. Total energy = 5968.3291 kcal/mol (5961.4797 without restraints) Performing minimization step: 3347. Total energy = 5966.9133 kcal/mol (5960.0649 without restraints) Performing minimization step: 3348. Total energy = 5965.4989 kcal/mol (5958.6516 without restraints) Performing minimization step: 3349. Total energy = 5964.0859 kcal/mol (5957.2397 without restraints) Performing minimization step: 3350. Total energy = 5962.6748 kcal/mol (5955.8299 without restraints) Performing minimization step: 3351. Total energy = 5961.2649 kcal/mol (5954.4210 without restraints) Performing minimization step: 3352. Total energy = 5959.8559 kcal/mol (5953.0133 without restraints) Performing minimization step: 3353. Total energy = 5958.4483 kcal/mol (5951.6069 without restraints) Performing minimization step: 3354. Total energy = 5957.0421 kcal/mol (5950.2018 without restraints) Performing minimization step: 3355. Total energy = 5955.6374 kcal/mol (5948.7982 without restraints) Performing minimization step: 3356. Total energy = 5954.2348 kcal/mol (5947.3969 without restraints) Performing minimization step: 3357. Total energy = 5952.8328 kcal/mol (5945.9960 without restraints) Performing minimization step: 3358. Total energy = 5951.4321 kcal/mol (5944.5964 without restraints) Performing minimization step: 3359. Total energy = 5950.0327 kcal/mol (5943.1982 without restraints) Performing minimization step: 3360. Total energy = 5948.6348 kcal/mol (5941.8015 without restraints) Performing minimization step: 3361. Total energy = 5947.2384 kcal/mol (5940.4064 without restraints) Performing minimization step: 3362. Total energy = 5945.8437 kcal/mol (5939.0126 without restraints) Performing minimization step: 3363. Total energy = 5944.4502 kcal/mol (5937.6203 without restraints) Performing minimization step: 3364. Total energy = 5943.0575 kcal/mol (5936.2288 without restraints) Performing minimization step: 3365. Total energy = 5941.6661 kcal/mol (5934.8385 without restraints) Performing minimization step: 3366. Total energy = 5940.2761 kcal/mol (5933.4497 without restraints) Performing minimization step: 3367. Total energy = 5938.8877 kcal/mol (5932.0625 without restraints) Performing minimization step: 3368. Total energy = 5937.5007 kcal/mol (5930.6768 without restraints) Performing minimization step: 3369. Total energy = 5936.1147 kcal/mol (5929.2918 without restraints) Performing minimization step: 3370. Total energy = 5934.7309 kcal/mol (5927.9091 without restraints) Performing minimization step: 3371. Total energy = 5933.3479 kcal/mol (5926.5273 without restraints) Performing minimization step: 3372. Total energy = 5931.9660 kcal/mol (5925.1467 without restraints) Performing minimization step: 3373. Total energy = 5930.5857 kcal/mol (5923.7674 without restraints) Performing minimization step: 3374. Total energy = 5929.2063 kcal/mol (5922.3892 without restraints) Performing minimization step: 3375. Total energy = 5927.8284 kcal/mol (5921.0123 without restraints) Performing minimization step: 3376. Total energy = 5926.4520 kcal/mol (5919.6371 without restraints) Performing minimization step: 3377. Total energy = 5925.0767 kcal/mol (5918.2630 without restraints) Performing minimization step: 3378. Total energy = 5923.7026 kcal/mol (5916.8901 without restraints) Performing minimization step: 3379. Total energy = 5922.3308 kcal/mol (5915.5194 without restraints) Performing minimization step: 3380. Total energy = 5920.9596 kcal/mol (5914.1494 without restraints) Performing minimization step: 3381. Total energy = 5919.5896 kcal/mol (5912.7804 without restraints) Performing minimization step: 3382. Total energy = 5918.2211 kcal/mol (5911.4131 without restraints) Performing minimization step: 3383. Total energy = 5916.8535 kcal/mol (5910.0467 without restraints) Performing minimization step: 3384. Total energy = 5915.4875 kcal/mol (5908.6818 without restraints) Performing minimization step: 3385. Total energy = 5914.1225 kcal/mol (5907.3179 without restraints) Performing minimization step: 3386. Total energy = 5912.7589 kcal/mol (5905.9555 without restraints) Performing minimization step: 3387. Total energy = 5911.3966 kcal/mol (5904.5943 without restraints) Performing minimization step: 3388. Total energy = 5910.0355 kcal/mol (5903.2344 without restraints) Performing minimization step: 3389. Total energy = 5908.6758 kcal/mol (5901.8758 without restraints) Performing minimization step: 3390. Total energy = 5907.3174 kcal/mol (5900.5186 without restraints) Performing minimization step: 3391. Total energy = 5905.9606 kcal/mol (5899.1629 without restraints) Performing minimization step: 3392. Total energy = 5904.6047 kcal/mol (5897.8081 without restraints) Performing minimization step: 3393. Total energy = 5903.2500 kcal/mol (5896.4546 without restraints) Performing minimization step: 3394. Total energy = 5901.8966 kcal/mol (5895.1023 without restraints) Performing minimization step: 3395. Total energy = 5900.5445 kcal/mol (5893.7513 without restraints) Performing minimization step: 3396. Total energy = 5899.1937 kcal/mol (5892.4017 without restraints) Performing minimization step: 3397. Total energy = 5897.8440 kcal/mol (5891.0530 without restraints) Performing minimization step: 3398. Total energy = 5896.4959 kcal/mol (5889.7061 without restraints) Performing minimization step: 3399. Total energy = 5895.1488 kcal/mol (5888.3602 without restraints) Performing minimization step: 3400. Total energy = 5893.8029 kcal/mol (5887.0155 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5892.4588 kcal/mol (5885.6725 without restraints) Performing minimization step: 3402. Total energy = 5891.1155 kcal/mol (5884.3303 without restraints) Performing minimization step: 3403. Total energy = 5889.7736 kcal/mol (5882.9895 without restraints) Performing minimization step: 3404. Total energy = 5888.4328 kcal/mol (5881.6499 without restraints) Performing minimization step: 3405. Total energy = 5887.0932 kcal/mol (5880.3114 without restraints) Performing minimization step: 3406. Total energy = 5885.7549 kcal/mol (5878.9742 without restraints) Performing minimization step: 3407. Total energy = 5884.4179 kcal/mol (5877.6383 without restraints) Performing minimization step: 3408. Total energy = 5883.0821 kcal/mol (5876.3037 without restraints) Performing minimization step: 3409. Total energy = 5881.7477 kcal/mol (5874.9705 without restraints) Performing minimization step: 3410. Total energy = 5880.4143 kcal/mol (5873.6381 without restraints) Performing minimization step: 3411. Total energy = 5879.0821 kcal/mol (5872.3071 without restraints) Performing minimization step: 3412. Total energy = 5877.7511 kcal/mol (5870.9772 without restraints) Performing minimization step: 3413. Total energy = 5876.4217 kcal/mol (5869.6489 without restraints) Performing minimization step: 3414. Total energy = 5875.0933 kcal/mol (5868.3216 without restraints) Performing minimization step: 3415. Total energy = 5873.7661 kcal/mol (5866.9955 without restraints) Performing minimization step: 3416. Total energy = 5872.4401 kcal/mol (5865.6706 without restraints) Performing minimization step: 3417. Total energy = 5871.1156 kcal/mol (5864.3473 without restraints) Performing minimization step: 3418. Total energy = 5869.7921 kcal/mol (5863.0250 without restraints) Performing minimization step: 3419. Total energy = 5868.4700 kcal/mol (5861.7040 without restraints) Performing minimization step: 3420. Total energy = 5867.1490 kcal/mol (5860.3840 without restraints) Performing minimization step: 3421. Total energy = 5865.8288 kcal/mol (5859.0650 without restraints) Performing minimization step: 3422. Total energy = 5864.5102 kcal/mol (5857.7475 without restraints) Performing minimization step: 3423. Total energy = 5863.1929 kcal/mol (5856.4313 without restraints) Performing minimization step: 3424. Total energy = 5861.8767 kcal/mol (5855.1162 without restraints) Performing minimization step: 3425. Total energy = 5860.5616 kcal/mol (5853.8023 without restraints) Performing minimization step: 3426. Total energy = 5859.2480 kcal/mol (5852.4898 without restraints) Performing minimization step: 3427. Total energy = 5857.9352 kcal/mol (5851.1781 without restraints) Performing minimization step: 3428. Total energy = 5856.6237 kcal/mol (5849.8677 without restraints) Performing minimization step: 3429. Total energy = 5855.3134 kcal/mol (5848.5585 without restraints) Performing minimization step: 3430. Total energy = 5854.0042 kcal/mol (5847.2505 without restraints) Performing minimization step: 3431. Total energy = 5852.6964 kcal/mol (5845.9437 without restraints) Performing minimization step: 3432. Total energy = 5851.3900 kcal/mol (5844.6385 without restraints) Performing minimization step: 3433. Total energy = 5850.0844 kcal/mol (5843.3340 without restraints) Performing minimization step: 3434. Total energy = 5848.7803 kcal/mol (5842.0310 without restraints) Performing minimization step: 3435. Total energy = 5847.4771 kcal/mol (5840.7290 without restraints) Performing minimization step: 3436. Total energy = 5846.1751 kcal/mol (5839.4280 without restraints) Performing minimization step: 3437. Total energy = 5844.8744 kcal/mol (5838.1284 without restraints) Performing minimization step: 3438. Total energy = 5843.5752 kcal/mol (5836.8303 without restraints) Performing minimization step: 3439. Total energy = 5842.2767 kcal/mol (5835.5331 without restraints) Performing minimization step: 3440. Total energy = 5840.9797 kcal/mol (5834.2370 without restraints) Performing minimization step: 3441. Total energy = 5839.6839 kcal/mol (5832.9425 without restraints) Performing minimization step: 3442. Total energy = 5838.3888 kcal/mol (5831.6483 without restraints) Performing minimization step: 3443. Total energy = 5837.0953 kcal/mol (5830.3560 without restraints) Performing minimization step: 3444. Total energy = 5835.8026 kcal/mol (5829.0643 without restraints) Performing minimization step: 3445. Total energy = 5834.5113 kcal/mol (5827.7744 without restraints) Performing minimization step: 3446. Total energy = 5833.2212 kcal/mol (5826.4851 without restraints) Performing minimization step: 3447. Total energy = 5831.9322 kcal/mol (5825.1974 without restraints) Performing minimization step: 3448. Total energy = 5830.6437 kcal/mol (5823.9099 without restraints) Performing minimization step: 3449. Total energy = 5829.3567 kcal/mol (5822.6240 without restraints) Performing minimization step: 3450. Total energy = 5828.0710 kcal/mol (5821.3396 without restraints) Performing minimization step: 3451. Total energy = 5826.7864 kcal/mol (5820.0558 without restraints) Performing minimization step: 3452. Total energy = 5825.5028 kcal/mol (5818.7734 without restraints) Performing minimization step: 3453. Total energy = 5824.2204 kcal/mol (5817.4920 without restraints) Performing minimization step: 3454. Total energy = 5822.9387 kcal/mol (5816.2113 without restraints) Performing minimization step: 3455. Total energy = 5821.6584 kcal/mol (5814.9322 without restraints) Performing minimization step: 3456. Total energy = 5820.3791 kcal/mol (5813.6540 without restraints) Performing minimization step: 3457. Total energy = 5819.1012 kcal/mol (5812.3773 without restraints) Performing minimization step: 3458. Total energy = 5817.8246 kcal/mol (5811.1018 without restraints) Performing minimization step: 3459. Total energy = 5816.5489 kcal/mol (5809.8271 without restraints) Performing minimization step: 3460. Total energy = 5815.2745 kcal/mol (5808.5539 without restraints) Performing minimization step: 3461. Total energy = 5814.0012 kcal/mol (5807.2816 without restraints) Performing minimization step: 3462. Total energy = 5812.7288 kcal/mol (5806.0103 without restraints) Performing minimization step: 3463. Total energy = 5811.4578 kcal/mol (5804.7404 without restraints) Performing minimization step: 3464. Total energy = 5810.1876 kcal/mol (5803.4713 without restraints) Performing minimization step: 3465. Total energy = 5808.9185 kcal/mol (5802.2032 without restraints) Performing minimization step: 3466. Total energy = 5807.6504 kcal/mol (5800.9363 without restraints) Performing minimization step: 3467. Total energy = 5806.3834 kcal/mol (5799.6704 without restraints) Performing minimization step: 3468. Total energy = 5805.1179 kcal/mol (5798.4061 without restraints) Performing minimization step: 3469. Total energy = 5803.8530 kcal/mol (5797.1421 without restraints) Performing minimization step: 3470. Total energy = 5802.5894 kcal/mol (5795.8796 without restraints) Performing minimization step: 3471. Total energy = 5801.3268 kcal/mol (5794.6181 without restraints) Performing minimization step: 3472. Total energy = 5800.0655 kcal/mol (5793.3579 without restraints) Performing minimization step: 3473. Total energy = 5798.8048 kcal/mol (5792.0983 without restraints) Performing minimization step: 3474. Total energy = 5797.5455 kcal/mol (5790.8400 without restraints) Performing minimization step: 3475. Total energy = 5796.2872 kcal/mol (5789.5828 without restraints) Performing minimization step: 3476. Total energy = 5795.0301 kcal/mol (5788.3268 without restraints) Performing minimization step: 3477. Total energy = 5793.7739 kcal/mol (5787.0717 without restraints) Performing minimization step: 3478. Total energy = 5792.5188 kcal/mol (5785.8177 without restraints) Performing minimization step: 3479. Total energy = 5791.2648 kcal/mol (5784.5648 without restraints) Performing minimization step: 3480. Total energy = 5790.0126 kcal/mol (5783.3136 without restraints) Performing minimization step: 3481. Total energy = 5788.7614 kcal/mol (5782.0636 without restraints) Performing minimization step: 3482. Total energy = 5787.5107 kcal/mol (5780.8138 without restraints) Performing minimization step: 3483. Total energy = 5786.2610 kcal/mol (5779.5652 without restraints) Performing minimization step: 3484. Total energy = 5785.0119 kcal/mol (5778.3172 without restraints) Performing minimization step: 3485. Total energy = 5783.7642 kcal/mol (5777.0706 without restraints) Performing minimization step: 3486. Total energy = 5782.5175 kcal/mol (5775.8249 without restraints) Performing minimization step: 3487. Total energy = 5781.2721 kcal/mol (5774.5806 without restraints) Performing minimization step: 3488. Total energy = 5780.0281 kcal/mol (5773.3377 without restraints) Performing minimization step: 3489. Total energy = 5778.7850 kcal/mol (5772.0957 without restraints) Performing minimization step: 3490. Total energy = 5777.5424 kcal/mol (5770.8541 without restraints) Performing minimization step: 3491. Total energy = 5776.3010 kcal/mol (5769.6139 without restraints) Performing minimization step: 3492. Total energy = 5775.0610 kcal/mol (5768.3749 without restraints) Performing minimization step: 3493. Total energy = 5773.8216 kcal/mol (5767.1365 without restraints) Performing minimization step: 3494. Total energy = 5772.5833 kcal/mol (5765.8993 without restraints) Performing minimization step: 3495. Total energy = 5771.3469 kcal/mol (5764.6640 without restraints) Performing minimization step: 3496. Total energy = 5770.1107 kcal/mol (5763.4289 without restraints) Performing minimization step: 3497. Total energy = 5768.8754 kcal/mol (5762.1946 without restraints) Performing minimization step: 3498. Total energy = 5767.6410 kcal/mol (5760.9613 without restraints) Performing minimization step: 3499. Total energy = 5766.4075 kcal/mol (5759.7288 without restraints) Performing minimization step: 3500. Total energy = 5765.1751 kcal/mol (5758.4974 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 5763.9438 kcal/mol (5757.2672 without restraints) Performing minimization step: 3502. Total energy = 5762.7134 kcal/mol (5756.0379 without restraints) Performing minimization step: 3503. Total energy = 5761.4840 kcal/mol (5754.8096 without restraints) Performing minimization step: 3504. Total energy = 5760.2559 kcal/mol (5753.5825 without restraints) Performing minimization step: 3505. Total energy = 5759.0285 kcal/mol (5752.3562 without restraints) Performing minimization step: 3506. Total energy = 5757.8021 kcal/mol (5751.1308 without restraints) Performing minimization step: 3507. Total energy = 5756.5767 kcal/mol (5749.9066 without restraints) Performing minimization step: 3508. Total energy = 5755.3523 kcal/mol (5748.6830 without restraints) Performing minimization step: 3509. Total energy = 5754.1289 kcal/mol (5747.4607 without restraints) Performing minimization step: 3510. Total energy = 5752.9065 kcal/mol (5746.2394 without restraints) Performing minimization step: 3511. Total energy = 5751.6854 kcal/mol (5745.0194 without restraints) Performing minimization step: 3512. Total energy = 5750.4651 kcal/mol (5743.8001 without restraints) Performing minimization step: 3513. Total energy = 5749.2457 kcal/mol (5742.5817 without restraints) Performing minimization step: 3514. Total energy = 5748.0268 kcal/mol (5741.3639 without restraints) Performing minimization step: 3515. Total energy = 5746.8093 kcal/mol (5740.1476 without restraints) Performing minimization step: 3516. Total energy = 5745.5927 kcal/mol (5738.9319 without restraints) Performing minimization step: 3517. Total energy = 5744.3769 kcal/mol (5737.7173 without restraints) Performing minimization step: 3518. Total energy = 5743.1626 kcal/mol (5736.5039 without restraints) Performing minimization step: 3519. Total energy = 5741.9489 kcal/mol (5735.2913 without restraints) Performing minimization step: 3520. Total energy = 5740.7357 kcal/mol (5734.0791 without restraints) Performing minimization step: 3521. Total energy = 5739.5237 kcal/mol (5732.8681 without restraints) Performing minimization step: 3522. Total energy = 5738.3127 kcal/mol (5731.6582 without restraints) Performing minimization step: 3523. Total energy = 5737.1029 kcal/mol (5730.4494 without restraints) Performing minimization step: 3524. Total energy = 5735.8940 kcal/mol (5729.2415 without restraints) Performing minimization step: 3525. Total energy = 5734.6857 kcal/mol (5728.0343 without restraints) Performing minimization step: 3526. Total energy = 5733.4783 kcal/mol (5726.8279 without restraints) Performing minimization step: 3527. Total energy = 5732.2720 kcal/mol (5725.6226 without restraints) Performing minimization step: 3528. Total energy = 5731.0667 kcal/mol (5724.4186 without restraints) Performing minimization step: 3529. Total energy = 5729.8625 kcal/mol (5723.2154 without restraints) Performing minimization step: 3530. Total energy = 5728.6592 kcal/mol (5722.0131 without restraints) Performing minimization step: 3531. Total energy = 5727.4570 kcal/mol (5720.8118 without restraints) Performing minimization step: 3532. Total energy = 5726.2554 kcal/mol (5719.6112 without restraints) Performing minimization step: 3533. Total energy = 5725.0544 kcal/mol (5718.4114 without restraints) Performing minimization step: 3534. Total energy = 5723.8547 kcal/mol (5717.2126 without restraints) Performing minimization step: 3535. Total energy = 5722.6558 kcal/mol (5716.0148 without restraints) Performing minimization step: 3536. Total energy = 5721.4577 kcal/mol (5714.8177 without restraints) Performing minimization step: 3537. Total energy = 5720.2612 kcal/mol (5713.6223 without restraints) Performing minimization step: 3538. Total energy = 5719.0653 kcal/mol (5712.4273 without restraints) Performing minimization step: 3539. Total energy = 5717.8698 kcal/mol (5711.2329 without restraints) Performing minimization step: 3540. Total energy = 5716.6753 kcal/mol (5710.0394 without restraints) Performing minimization step: 3541. Total energy = 5715.4815 kcal/mol (5708.8466 without restraints) Performing minimization step: 3542. Total energy = 5714.2889 kcal/mol (5707.6550 without restraints) Performing minimization step: 3543. Total energy = 5713.0971 kcal/mol (5706.4643 without restraints) Performing minimization step: 3544. Total energy = 5711.9059 kcal/mol (5705.2740 without restraints) Performing minimization step: 3545. Total energy = 5710.7157 kcal/mol (5704.0848 without restraints) Performing minimization step: 3546. Total energy = 5709.5264 kcal/mol (5702.8965 without restraints) Performing minimization step: 3547. Total energy = 5708.3381 kcal/mol (5701.7093 without restraints) Performing minimization step: 3548. Total energy = 5707.1510 kcal/mol (5700.5232 without restraints) Performing minimization step: 3549. Total energy = 5705.9644 kcal/mol (5699.3376 without restraints) Performing minimization step: 3550. Total energy = 5704.7786 kcal/mol (5698.1528 without restraints) Performing minimization step: 3551. Total energy = 5703.5936 kcal/mol (5696.9688 without restraints) Performing minimization step: 3552. Total energy = 5702.4098 kcal/mol (5695.7861 without restraints) Performing minimization step: 3553. Total energy = 5701.2274 kcal/mol (5694.6046 without restraints) Performing minimization step: 3554. Total energy = 5700.0451 kcal/mol (5693.4235 without restraints) Performing minimization step: 3555. Total energy = 5698.8639 kcal/mol (5692.2432 without restraints) Performing minimization step: 3556. Total energy = 5697.6832 kcal/mol (5691.0636 without restraints) Performing minimization step: 3557. Total energy = 5696.5034 kcal/mol (5689.8848 without restraints) Performing minimization step: 3558. Total energy = 5695.3246 kcal/mol (5688.7070 without restraints) Performing minimization step: 3559. Total energy = 5694.1467 kcal/mol (5687.5301 without restraints) Performing minimization step: 3560. Total energy = 5692.9694 kcal/mol (5686.3540 without restraints) Performing minimization step: 3561. Total energy = 5691.7930 kcal/mol (5685.1784 without restraints) Performing minimization step: 3562. Total energy = 5690.6170 kcal/mol (5684.0033 without restraints) Performing minimization step: 3563. Total energy = 5689.4429 kcal/mol (5682.8304 without restraints) Performing minimization step: 3564. Total energy = 5688.2688 kcal/mol (5681.6572 without restraints) Performing minimization step: 3565. Total energy = 5687.0956 kcal/mol (5680.4850 without restraints) Performing minimization step: 3566. Total energy = 5685.9230 kcal/mol (5679.3134 without restraints) Performing minimization step: 3567. Total energy = 5684.7513 kcal/mol (5678.1427 without restraints) Performing minimization step: 3568. Total energy = 5683.5809 kcal/mol (5676.9733 without restraints) Performing minimization step: 3569. Total energy = 5682.4110 kcal/mol (5675.8045 without restraints) Performing minimization step: 3570. Total energy = 5681.2418 kcal/mol (5674.6361 without restraints) Performing minimization step: 3571. Total energy = 5680.0732 kcal/mol (5673.4685 without restraints) Performing minimization step: 3572. Total energy = 5678.9053 kcal/mol (5672.3016 without restraints) Performing minimization step: 3573. Total energy = 5677.7379 kcal/mol (5671.1353 without restraints) Performing minimization step: 3574. Total energy = 5676.5717 kcal/mol (5669.9700 without restraints) Performing minimization step: 3575. Total energy = 5675.4062 kcal/mol (5668.8055 without restraints) Performing minimization step: 3576. Total energy = 5674.2415 kcal/mol (5667.6417 without restraints) Performing minimization step: 3577. Total energy = 5673.0775 kcal/mol (5666.4788 without restraints) Performing minimization step: 3578. Total energy = 5671.9147 kcal/mol (5665.3170 without restraints) Performing minimization step: 3579. Total energy = 5670.7523 kcal/mol (5664.1555 without restraints) Performing minimization step: 3580. Total energy = 5669.5911 kcal/mol (5662.9952 without restraints) Performing minimization step: 3581. Total energy = 5668.4301 kcal/mol (5661.8353 without restraints) Performing minimization step: 3582. Total energy = 5667.2700 kcal/mol (5660.6762 without restraints) Performing minimization step: 3583. Total energy = 5666.1106 kcal/mol (5659.5178 without restraints) Performing minimization step: 3584. Total energy = 5664.9520 kcal/mol (5658.3601 without restraints) Performing minimization step: 3585. Total energy = 5663.7942 kcal/mol (5657.2034 without restraints) Performing minimization step: 3586. Total energy = 5662.6370 kcal/mol (5656.0471 without restraints) Performing minimization step: 3587. Total energy = 5661.4806 kcal/mol (5654.8917 without restraints) Performing minimization step: 3588. Total energy = 5660.3253 kcal/mol (5653.7373 without restraints) Performing minimization step: 3589. Total energy = 5659.1703 kcal/mol (5652.5833 without restraints) Performing minimization step: 3590. Total energy = 5658.0160 kcal/mol (5651.4301 without restraints) Performing minimization step: 3591. Total energy = 5656.8626 kcal/mol (5650.2778 without restraints) Performing minimization step: 3592. Total energy = 5655.7102 kcal/mol (5649.1261 without restraints) Performing minimization step: 3593. Total energy = 5654.5580 kcal/mol (5647.9750 without restraints) Performing minimization step: 3594. Total energy = 5653.4067 kcal/mol (5646.8246 without restraints) Performing minimization step: 3595. Total energy = 5652.2562 kcal/mol (5645.6750 without restraints) Performing minimization step: 3596. Total energy = 5651.1063 kcal/mol (5644.5262 without restraints) Performing minimization step: 3597. Total energy = 5649.9572 kcal/mol (5643.3780 without restraints) Performing minimization step: 3598. Total energy = 5648.8085 kcal/mol (5642.2303 without restraints) Performing minimization step: 3599. Total energy = 5647.6608 kcal/mol (5641.0835 without restraints) Performing minimization step: 3600. Total energy = 5646.5135 kcal/mol (5639.9372 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 5645.3671 kcal/mol (5638.7918 without restraints) Performing minimization step: 3602. Total energy = 5644.2217 kcal/mol (5637.6475 without restraints) Performing minimization step: 3603. Total energy = 5643.0765 kcal/mol (5636.5030 without restraints) Performing minimization step: 3604. Total energy = 5641.9320 kcal/mol (5635.3597 without restraints) Performing minimization step: 3605. Total energy = 5640.7887 kcal/mol (5634.2172 without restraints) Performing minimization step: 3606. Total energy = 5639.6456 kcal/mol (5633.0752 without restraints) Performing minimization step: 3607. Total energy = 5638.5037 kcal/mol (5631.9341 without restraints) Performing minimization step: 3608. Total energy = 5637.3615 kcal/mol (5630.7929 without restraints) Performing minimization step: 3609. Total energy = 5636.2203 kcal/mol (5629.6526 without restraints) Performing minimization step: 3610. Total energy = 5635.0797 kcal/mol (5628.5130 without restraints) Performing minimization step: 3611. Total energy = 5633.9403 kcal/mol (5627.3745 without restraints) Performing minimization step: 3612. Total energy = 5632.8010 kcal/mol (5626.2362 without restraints) Performing minimization step: 3613. Total energy = 5631.6624 kcal/mol (5625.0986 without restraints) Performing minimization step: 3614. Total energy = 5630.5246 kcal/mol (5623.9617 without restraints) Performing minimization step: 3615. Total energy = 5629.3875 kcal/mol (5622.8255 without restraints) Performing minimization step: 3616. Total energy = 5628.2508 kcal/mol (5621.6898 without restraints) Performing minimization step: 3617. Total energy = 5627.1149 kcal/mol (5620.5549 without restraints) Performing minimization step: 3618. Total energy = 5625.9792 kcal/mol (5619.4201 without restraints) Performing minimization step: 3619. Total energy = 5624.8446 kcal/mol (5618.2864 without restraints) Performing minimization step: 3620. Total energy = 5623.7104 kcal/mol (5617.1531 without restraints) Performing minimization step: 3621. Total energy = 5622.5770 kcal/mol (5616.0209 without restraints) Performing minimization step: 3622. Total energy = 5621.4443 kcal/mol (5614.8890 without restraints) Performing minimization step: 3623. Total energy = 5620.3119 kcal/mol (5613.7575 without restraints) Performing minimization step: 3624. Total energy = 5619.1799 kcal/mol (5612.6264 without restraints) Performing minimization step: 3625. Total energy = 5618.0489 kcal/mol (5611.4965 without restraints) Performing minimization step: 3626. Total energy = 5616.9187 kcal/mol (5610.3670 without restraints) Performing minimization step: 3627. Total energy = 5615.7888 kcal/mol (5609.2381 without restraints) Performing minimization step: 3628. Total energy = 5614.6596 kcal/mol (5608.1098 without restraints) Performing minimization step: 3629. Total energy = 5613.5307 kcal/mol (5606.9818 without restraints) Performing minimization step: 3630. Total energy = 5612.4027 kcal/mol (5605.8548 without restraints) Performing minimization step: 3631. Total energy = 5611.2751 kcal/mol (5604.7282 without restraints) Performing minimization step: 3632. Total energy = 5610.1482 kcal/mol (5603.6021 without restraints) Performing minimization step: 3633. Total energy = 5609.0218 kcal/mol (5602.4767 without restraints) Performing minimization step: 3634. Total energy = 5607.8965 kcal/mol (5601.3522 without restraints) Performing minimization step: 3635. Total energy = 5606.7708 kcal/mol (5600.2276 without restraints) Performing minimization step: 3636. Total energy = 5605.6460 kcal/mol (5599.1036 without restraints) Performing minimization step: 3637. Total energy = 5604.5223 kcal/mol (5597.9808 without restraints) Performing minimization step: 3638. Total energy = 5603.3985 kcal/mol (5596.8579 without restraints) Performing minimization step: 3639. Total energy = 5602.2751 kcal/mol (5595.7355 without restraints) Performing minimization step: 3640. Total energy = 5601.1526 kcal/mol (5594.6139 without restraints) Performing minimization step: 3641. Total energy = 5600.0304 kcal/mol (5593.4926 without restraints) Performing minimization step: 3642. Total energy = 5598.9088 kcal/mol (5592.3719 without restraints) Performing minimization step: 3643. Total energy = 5597.7878 kcal/mol (5591.2520 without restraints) Performing minimization step: 3644. Total energy = 5596.6676 kcal/mol (5590.1326 without restraints) Performing minimization step: 3645. Total energy = 5595.5475 kcal/mol (5589.0134 without restraints) Performing minimization step: 3646. Total energy = 5594.4283 kcal/mol (5587.8951 without restraints) Performing minimization step: 3647. Total energy = 5593.3092 kcal/mol (5586.7769 without restraints) Performing minimization step: 3648. Total energy = 5592.1907 kcal/mol (5585.6593 without restraints) Performing minimization step: 3649. Total energy = 5591.0726 kcal/mol (5584.5421 without restraints) Performing minimization step: 3650. Total energy = 5589.9550 kcal/mol (5583.4254 without restraints) Performing minimization step: 3651. Total energy = 5588.8385 kcal/mol (5582.3098 without restraints) Performing minimization step: 3652. Total energy = 5587.7221 kcal/mol (5581.1943 without restraints) Performing minimization step: 3653. Total energy = 5586.6063 kcal/mol (5580.0795 without restraints) Performing minimization step: 3654. Total energy = 5585.4907 kcal/mol (5578.9647 without restraints) Performing minimization step: 3655. Total energy = 5584.3762 kcal/mol (5577.8511 without restraints) Performing minimization step: 3656. Total energy = 5583.2615 kcal/mol (5576.7373 without restraints) Performing minimization step: 3657. Total energy = 5582.1474 kcal/mol (5575.6241 without restraints) Performing minimization step: 3658. Total energy = 5581.0338 kcal/mol (5574.5114 without restraints) Performing minimization step: 3659. Total energy = 5579.9206 kcal/mol (5573.3990 without restraints) Performing minimization step: 3660. Total energy = 5578.8078 kcal/mol (5572.2872 without restraints) Performing minimization step: 3661. Total energy = 5577.6955 kcal/mol (5571.1758 without restraints) Performing minimization step: 3662. Total energy = 5576.5834 kcal/mol (5570.0646 without restraints) Performing minimization step: 3663. Total energy = 5575.4722 kcal/mol (5568.9543 without restraints) Performing minimization step: 3664. Total energy = 5574.3612 kcal/mol (5567.8442 without restraints) Performing minimization step: 3665. Total energy = 5573.2507 kcal/mol (5566.7345 without restraints) Performing minimization step: 3666. Total energy = 5572.1406 kcal/mol (5565.6253 without restraints) Performing minimization step: 3667. Total energy = 5571.0309 kcal/mol (5564.5165 without restraints) Performing minimization step: 3668. Total energy = 5569.9225 kcal/mol (5563.4089 without restraints) Performing minimization step: 3669. Total energy = 5568.8138 kcal/mol (5562.3013 without restraints) Performing minimization step: 3670. Total energy = 5567.7056 kcal/mol (5561.1938 without restraints) Performing minimization step: 3671. Total energy = 5566.5978 kcal/mol (5560.0869 without restraints) Performing minimization step: 3672. Total energy = 5565.4903 kcal/mol (5558.9803 without restraints) Performing minimization step: 3673. Total energy = 5564.3837 kcal/mol (5557.8746 without restraints) Performing minimization step: 3674. Total energy = 5563.2772 kcal/mol (5556.7689 without restraints) Performing minimization step: 3675. Total energy = 5562.1707 kcal/mol (5555.6634 without restraints) Performing minimization step: 3676. Total energy = 5561.0649 kcal/mol (5554.5584 without restraints) Performing minimization step: 3677. Total energy = 5559.9593 kcal/mol (5553.4536 without restraints) Performing minimization step: 3678. Total energy = 5558.8545 kcal/mol (5552.3497 without restraints) Performing minimization step: 3679. Total energy = 5557.7494 kcal/mol (5551.2455 without restraints) Performing minimization step: 3680. Total energy = 5556.6451 kcal/mol (5550.1420 without restraints) Performing minimization step: 3681. Total energy = 5555.5413 kcal/mol (5549.0391 without restraints) Performing minimization step: 3682. Total energy = 5554.4377 kcal/mol (5547.9366 without restraints) Performing minimization step: 3683. Total energy = 5553.3351 kcal/mol (5546.8348 without restraints) Performing minimization step: 3684. Total energy = 5552.2331 kcal/mol (5545.7335 without restraints) Performing minimization step: 3685. Total energy = 5551.1308 kcal/mol (5544.6321 without restraints) Performing minimization step: 3686. Total energy = 5550.0289 kcal/mol (5543.5310 without restraints) Performing minimization step: 3687. Total energy = 5548.9273 kcal/mol (5542.4303 without restraints) Performing minimization step: 3688. Total energy = 5547.8263 kcal/mol (5541.3302 without restraints) Performing minimization step: 3689. Total energy = 5546.7255 kcal/mol (5540.2302 without restraints) Performing minimization step: 3690. Total energy = 5545.6249 kcal/mol (5539.1305 without restraints) Performing minimization step: 3691. Total energy = 5544.5247 kcal/mol (5538.0312 without restraints) Performing minimization step: 3692. Total energy = 5543.4250 kcal/mol (5536.9323 without restraints) Performing minimization step: 3693. Total energy = 5542.3256 kcal/mol (5535.8337 without restraints) Performing minimization step: 3694. Total energy = 5541.2266 kcal/mol (5534.7356 without restraints) Performing minimization step: 3695. Total energy = 5540.1279 kcal/mol (5533.6378 without restraints) Performing minimization step: 3696. Total energy = 5539.0296 kcal/mol (5532.5403 without restraints) Performing minimization step: 3697. Total energy = 5537.9316 kcal/mol (5531.4432 without restraints) Performing minimization step: 3698. Total energy = 5536.8341 kcal/mol (5530.3464 without restraints) Performing minimization step: 3699. Total energy = 5535.7371 kcal/mol (5529.2505 without restraints) Performing minimization step: 3700. Total energy = 5534.6404 kcal/mol (5528.1545 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 5533.5437 kcal/mol (5527.0586 without restraints) Performing minimization step: 3702. Total energy = 5532.4474 kcal/mol (5525.9632 without restraints) Performing minimization step: 3703. Total energy = 5531.3517 kcal/mol (5524.8683 without restraints) Performing minimization step: 3704. Total energy = 5530.2564 kcal/mol (5523.7740 without restraints) Performing minimization step: 3705. Total energy = 5529.1611 kcal/mol (5522.6793 without restraints) Performing minimization step: 3706. Total energy = 5528.0662 kcal/mol (5521.5854 without restraints) Performing minimization step: 3707. Total energy = 5526.9719 kcal/mol (5520.4919 without restraints) Performing minimization step: 3708. Total energy = 5525.8775 kcal/mol (5519.3983 without restraints) Performing minimization step: 3709. Total energy = 5524.7835 kcal/mol (5518.3051 without restraints) Performing minimization step: 3710. Total energy = 5523.6901 kcal/mol (5517.2126 without restraints) Performing minimization step: 3711. Total energy = 5522.5975 kcal/mol (5516.1209 without restraints) Performing minimization step: 3712. Total energy = 5521.5048 kcal/mol (5515.0290 without restraints) Performing minimization step: 3713. Total energy = 5520.4121 kcal/mol (5513.9371 without restraints) Performing minimization step: 3714. Total energy = 5519.3199 kcal/mol (5512.8458 without restraints) Performing minimization step: 3715. Total energy = 5518.2280 kcal/mol (5511.7546 without restraints) Performing minimization step: 3716. Total energy = 5517.1367 kcal/mol (5510.6642 without restraints) Performing minimization step: 3717. Total energy = 5516.0457 kcal/mol (5509.5741 without restraints) Performing minimization step: 3718. Total energy = 5514.9549 kcal/mol (5508.4841 without restraints) Performing minimization step: 3719. Total energy = 5513.8642 kcal/mol (5507.3942 without restraints) Performing minimization step: 3720. Total energy = 5512.7738 kcal/mol (5506.3046 without restraints) Performing minimization step: 3721. Total energy = 5511.6837 kcal/mol (5505.2153 without restraints) Performing minimization step: 3722. Total energy = 5510.5939 kcal/mol (5504.1263 without restraints) Performing minimization step: 3723. Total energy = 5509.5043 kcal/mol (5503.0376 without restraints) Performing minimization step: 3724. Total energy = 5508.4150 kcal/mol (5501.9491 without restraints) Performing minimization step: 3725. Total energy = 5507.3260 kcal/mol (5500.8610 without restraints) Performing minimization step: 3726. Total energy = 5506.2379 kcal/mol (5499.7736 without restraints) Performing minimization step: 3727. Total energy = 5505.1498 kcal/mol (5498.6863 without restraints) Performing minimization step: 3728. Total energy = 5504.0622 kcal/mol (5497.5996 without restraints) Performing minimization step: 3729. Total energy = 5502.9753 kcal/mol (5496.5136 without restraints) Performing minimization step: 3730. Total energy = 5501.8887 kcal/mol (5495.4277 without restraints) Performing minimization step: 3731. Total energy = 5500.8019 kcal/mol (5494.3417 without restraints) Performing minimization step: 3732. Total energy = 5499.7153 kcal/mol (5493.2560 without restraints) Performing minimization step: 3733. Total energy = 5498.6289 kcal/mol (5492.1703 without restraints) Performing minimization step: 3734. Total energy = 5497.5427 kcal/mol (5491.0850 without restraints) Performing minimization step: 3735. Total energy = 5496.4569 kcal/mol (5490.0000 without restraints) Performing minimization step: 3736. Total energy = 5495.3712 kcal/mol (5488.9152 without restraints) Performing minimization step: 3737. Total energy = 5494.2861 kcal/mol (5487.8309 without restraints) Performing minimization step: 3738. Total energy = 5493.2010 kcal/mol (5486.7466 without restraints) Performing minimization step: 3739. Total energy = 5492.1165 kcal/mol (5485.6628 without restraints) Performing minimization step: 3740. Total energy = 5491.0328 kcal/mol (5484.5799 without restraints) Performing minimization step: 3741. Total energy = 5489.9490 kcal/mol (5483.4970 without restraints) Performing minimization step: 3742. Total energy = 5488.8654 kcal/mol (5482.4141 without restraints) Performing minimization step: 3743. Total energy = 5487.7822 kcal/mol (5481.3318 without restraints) Performing minimization step: 3744. Total energy = 5486.6990 kcal/mol (5480.2494 without restraints) Performing minimization step: 3745. Total energy = 5485.6163 kcal/mol (5479.1675 without restraints) Performing minimization step: 3746. Total energy = 5484.5343 kcal/mol (5478.0864 without restraints) Performing minimization step: 3747. Total energy = 5483.4523 kcal/mol (5477.0050 without restraints) Performing minimization step: 3748. Total energy = 5482.3707 kcal/mol (5475.9244 without restraints) Performing minimization step: 3749. Total energy = 5481.2894 kcal/mol (5474.8438 without restraints) Performing minimization step: 3750. Total energy = 5480.2082 kcal/mol (5473.7634 without restraints) Performing minimization step: 3751. Total energy = 5479.1276 kcal/mol (5472.6836 without restraints) Performing minimization step: 3752. Total energy = 5478.0472 kcal/mol (5471.6040 without restraints) Performing minimization step: 3753. Total energy = 5476.9673 kcal/mol (5470.5249 without restraints) Performing minimization step: 3754. Total energy = 5475.8877 kcal/mol (5469.4461 without restraints) Performing minimization step: 3755. Total energy = 5474.8085 kcal/mol (5468.3677 without restraints) Performing minimization step: 3756. Total energy = 5473.7294 kcal/mol (5467.2893 without restraints) Performing minimization step: 3757. Total energy = 5472.6505 kcal/mol (5466.2114 without restraints) Performing minimization step: 3758. Total energy = 5471.5717 kcal/mol (5465.1333 without restraints) Performing minimization step: 3759. Total energy = 5470.4937 kcal/mol (5464.0561 without restraints) Performing minimization step: 3760. Total energy = 5469.4162 kcal/mol (5462.9794 without restraints) Performing minimization step: 3761. Total energy = 5468.3386 kcal/mol (5461.9027 without restraints) Performing minimization step: 3762. Total energy = 5467.2617 kcal/mol (5460.8265 without restraints) Performing minimization step: 3763. Total energy = 5466.1852 kcal/mol (5459.7509 without restraints) Performing minimization step: 3764. Total energy = 5465.1094 kcal/mol (5458.6758 without restraints) Performing minimization step: 3765. Total energy = 5464.0335 kcal/mol (5457.6007 without restraints) Performing minimization step: 3766. Total energy = 5462.9579 kcal/mol (5456.5259 without restraints) Performing minimization step: 3767. Total energy = 5461.8828 kcal/mol (5455.4517 without restraints) Performing minimization step: 3768. Total energy = 5460.8081 kcal/mol (5454.3777 without restraints) Performing minimization step: 3769. Total energy = 5459.7337 kcal/mol (5453.3041 without restraints) Performing minimization step: 3770. Total energy = 5458.6603 kcal/mol (5452.2315 without restraints) Performing minimization step: 3771. Total energy = 5457.5868 kcal/mol (5451.1589 without restraints) Performing minimization step: 3772. Total energy = 5456.5136 kcal/mol (5450.0864 without restraints) Performing minimization step: 3773. Total energy = 5455.4406 kcal/mol (5449.0143 without restraints) Performing minimization step: 3774. Total energy = 5454.3683 kcal/mol (5447.9428 without restraints) Performing minimization step: 3775. Total energy = 5453.2963 kcal/mol (5446.8714 without restraints) Performing minimization step: 3776. Total energy = 5452.2246 kcal/mol (5445.8006 without restraints) Performing minimization step: 3777. Total energy = 5451.1532 kcal/mol (5444.7300 without restraints) Performing minimization step: 3778. Total energy = 5450.0819 kcal/mol (5443.6595 without restraints) Performing minimization step: 3779. Total energy = 5449.0117 kcal/mol (5442.5902 without restraints) Performing minimization step: 3780. Total energy = 5447.9417 kcal/mol (5441.5208 without restraints) Performing minimization step: 3781. Total energy = 5446.8724 kcal/mol (5440.4523 without restraints) Performing minimization step: 3782. Total energy = 5445.8036 kcal/mol (5439.3845 without restraints) Performing minimization step: 3783. Total energy = 5444.7351 kcal/mol (5438.3166 without restraints) Performing minimization step: 3784. Total energy = 5443.6665 kcal/mol (5437.2486 without restraints) Performing minimization step: 3785. Total energy = 5442.5987 kcal/mol (5436.1818 without restraints) Performing minimization step: 3786. Total energy = 5441.5313 kcal/mol (5435.1153 without restraints) Performing minimization step: 3787. Total energy = 5440.4643 kcal/mol (5434.0490 without restraints) Performing minimization step: 3788. Total energy = 5439.3976 kcal/mol (5432.9831 without restraints) Performing minimization step: 3789. Total energy = 5438.3316 kcal/mol (5431.9179 without restraints) Performing minimization step: 3790. Total energy = 5437.2661 kcal/mol (5430.8534 without restraints) Performing minimization step: 3791. Total energy = 5436.2015 kcal/mol (5429.7893 without restraints) Performing minimization step: 3792. Total energy = 5435.1367 kcal/mol (5428.7253 without restraints) Performing minimization step: 3793. Total energy = 5434.0728 kcal/mol (5427.6625 without restraints) Performing minimization step: 3794. Total energy = 5433.0090 kcal/mol (5426.5991 without restraints) Performing minimization step: 3795. Total energy = 5431.9453 kcal/mol (5425.5363 without restraints) Performing minimization step: 3796. Total energy = 5430.8825 kcal/mol (5424.4744 without restraints) Performing minimization step: 3797. Total energy = 5429.8202 kcal/mol (5423.4127 without restraints) Performing minimization step: 3798. Total energy = 5428.7579 kcal/mol (5422.3513 without restraints) Performing minimization step: 3799. Total energy = 5427.6965 kcal/mol (5421.2908 without restraints) Performing minimization step: 3800. Total energy = 5426.6357 kcal/mol (5420.2306 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 5425.5750 kcal/mol (5419.1707 without restraints) Performing minimization step: 3802. Total energy = 5424.5149 kcal/mol (5418.1115 without restraints) Performing minimization step: 3803. Total energy = 5423.4554 kcal/mol (5417.0527 without restraints) Performing minimization step: 3804. Total energy = 5422.3964 kcal/mol (5415.9946 without restraints) Performing minimization step: 3805. Total energy = 5421.3378 kcal/mol (5414.9366 without restraints) Performing minimization step: 3806. Total energy = 5420.2797 kcal/mol (5413.8794 without restraints) Performing minimization step: 3807. Total energy = 5419.2225 kcal/mol (5412.8230 without restraints) Performing minimization step: 3808. Total energy = 5418.1655 kcal/mol (5411.7668 without restraints) Performing minimization step: 3809. Total energy = 5417.1093 kcal/mol (5410.7114 without restraints) Performing minimization step: 3810. Total energy = 5416.0534 kcal/mol (5409.6563 without restraints) Performing minimization step: 3811. Total energy = 5414.9985 kcal/mol (5408.6021 without restraints) Performing minimization step: 3812. Total energy = 5413.9443 kcal/mol (5407.5487 without restraints) Performing minimization step: 3813. Total energy = 5412.8897 kcal/mol (5406.4950 without restraints) Performing minimization step: 3814. Total energy = 5411.8360 kcal/mol (5405.4421 without restraints) Performing minimization step: 3815. Total energy = 5410.7829 kcal/mol (5404.3897 without restraints) Performing minimization step: 3816. Total energy = 5409.7304 kcal/mol (5403.3380 without restraints) Performing minimization step: 3817. Total energy = 5408.6785 kcal/mol (5402.2869 without restraints) Performing minimization step: 3818. Total energy = 5407.6269 kcal/mol (5401.2361 without restraints) Performing minimization step: 3819. Total energy = 5406.5764 kcal/mol (5400.1864 without restraints) Performing minimization step: 3820. Total energy = 5405.5259 kcal/mol (5399.1367 without restraints) Performing minimization step: 3821. Total energy = 5404.4762 kcal/mol (5398.0877 without restraints) Performing minimization step: 3822. Total energy = 5403.4271 kcal/mol (5397.0394 without restraints) Performing minimization step: 3823. Total energy = 5402.3786 kcal/mol (5395.9917 without restraints) Performing minimization step: 3824. Total energy = 5401.3306 kcal/mol (5394.9445 without restraints) Performing minimization step: 3825. Total energy = 5400.2836 kcal/mol (5393.8983 without restraints) Performing minimization step: 3826. Total energy = 5399.2367 kcal/mol (5392.8522 without restraints) Performing minimization step: 3827. Total energy = 5398.1906 kcal/mol (5391.8068 without restraints) Performing minimization step: 3828. Total energy = 5397.1455 kcal/mol (5390.7628 without restraints) Performing minimization step: 3829. Total energy = 5396.1007 kcal/mol (5389.7185 without restraints) Performing minimization step: 3830. Total energy = 5395.0562 kcal/mol (5388.6748 without restraints) Performing minimization step: 3831. Total energy = 5394.0125 kcal/mol (5387.6319 without restraints) Performing minimization step: 3832. Total energy = 5392.9694 kcal/mol (5386.5896 without restraints) Performing minimization step: 3833. Total energy = 5391.9269 kcal/mol (5385.5479 without restraints) Performing minimization step: 3834. Total energy = 5390.8852 kcal/mol (5384.5070 without restraints) Performing minimization step: 3835. Total energy = 5389.8442 kcal/mol (5383.4668 without restraints) Performing minimization step: 3836. Total energy = 5388.8035 kcal/mol (5382.4271 without restraints) Performing minimization step: 3837. Total energy = 5387.7637 kcal/mol (5381.3879 without restraints) Performing minimization step: 3838. Total energy = 5386.7244 kcal/mol (5380.3493 without restraints) Performing minimization step: 3839. Total energy = 5385.6857 kcal/mol (5379.3114 without restraints) Performing minimization step: 3840. Total energy = 5384.6479 kcal/mol (5378.2744 without restraints) Performing minimization step: 3841. Total energy = 5383.6105 kcal/mol (5377.2379 without restraints) Performing minimization step: 3842. Total energy = 5382.5736 kcal/mol (5376.2017 without restraints) Performing minimization step: 3843. Total energy = 5381.5378 kcal/mol (5375.1666 without restraints) Performing minimization step: 3844. Total energy = 5380.5022 kcal/mol (5374.1318 without restraints) Performing minimization step: 3845. Total energy = 5379.4677 kcal/mol (5373.0981 without restraints) Performing minimization step: 3846. Total energy = 5378.4336 kcal/mol (5372.0650 without restraints) Performing minimization step: 3847. Total energy = 5377.4006 kcal/mol (5371.0326 without restraints) Performing minimization step: 3848. Total energy = 5376.3678 kcal/mol (5370.0005 without restraints) Performing minimization step: 3849. Total energy = 5375.3355 kcal/mol (5368.9691 without restraints) Performing minimization step: 3850. Total energy = 5374.3043 kcal/mol (5367.9387 without restraints) Performing minimization step: 3851. Total energy = 5373.2734 kcal/mol (5366.9086 without restraints) Performing minimization step: 3852. Total energy = 5372.2432 kcal/mol (5365.8791 without restraints) Performing minimization step: 3853. Total energy = 5371.2136 kcal/mol (5364.8503 without restraints) Performing minimization step: 3854. Total energy = 5370.1853 kcal/mol (5363.8228 without restraints) Performing minimization step: 3855. Total energy = 5369.1571 kcal/mol (5362.7953 without restraints) Performing minimization step: 3856. Total energy = 5368.1295 kcal/mol (5361.7685 without restraints) Performing minimization step: 3857. Total energy = 5367.1026 kcal/mol (5360.7424 without restraints) Performing minimization step: 3858. Total energy = 5366.0765 kcal/mol (5359.7171 without restraints) Performing minimization step: 3859. Total energy = 5365.0509 kcal/mol (5358.6923 without restraints) Performing minimization step: 3860. Total energy = 5364.0263 kcal/mol (5357.6685 without restraints) Performing minimization step: 3861. Total energy = 5363.0021 kcal/mol (5356.6451 without restraints) Performing minimization step: 3862. Total energy = 5361.9784 kcal/mol (5355.6221 without restraints) Performing minimization step: 3863. Total energy = 5360.9555 kcal/mol (5354.6000 without restraints) Performing minimization step: 3864. Total energy = 5359.9332 kcal/mol (5353.5784 without restraints) Performing minimization step: 3865. Total energy = 5358.9116 kcal/mol (5352.5577 without restraints) Performing minimization step: 3866. Total energy = 5357.8908 kcal/mol (5351.5377 without restraints) Performing minimization step: 3867. Total energy = 5356.8707 kcal/mol (5350.5184 without restraints) Performing minimization step: 3868. Total energy = 5355.8513 kcal/mol (5349.4997 without restraints) Performing minimization step: 3869. Total energy = 5354.8325 kcal/mol (5348.4817 without restraints) Performing minimization step: 3870. Total energy = 5353.8143 kcal/mol (5347.4643 without restraints) Performing minimization step: 3871. Total energy = 5352.7970 kcal/mol (5346.4477 without restraints) Performing minimization step: 3872. Total energy = 5351.7800 kcal/mol (5345.4314 without restraints) Performing minimization step: 3873. Total energy = 5350.7638 kcal/mol (5344.4161 without restraints) Performing minimization step: 3874. Total energy = 5349.7485 kcal/mol (5343.4015 without restraints) Performing minimization step: 3875. Total energy = 5348.7341 kcal/mol (5342.3880 without restraints) Performing minimization step: 3876. Total energy = 5347.7201 kcal/mol (5341.3747 without restraints) Performing minimization step: 3877. Total energy = 5346.7069 kcal/mol (5340.3625 without restraints) Performing minimization step: 3878. Total energy = 5345.6944 kcal/mol (5339.3506 without restraints) Performing minimization step: 3879. Total energy = 5344.6824 kcal/mol (5338.3394 without restraints) Performing minimization step: 3880. Total energy = 5343.6711 kcal/mol (5337.3288 without restraints) Performing minimization step: 3881. Total energy = 5342.6604 kcal/mol (5336.3190 without restraints) Performing minimization step: 3882. Total energy = 5341.6503 kcal/mol (5335.3096 without restraints) Performing minimization step: 3883. Total energy = 5340.6410 kcal/mol (5334.3011 without restraints) Performing minimization step: 3884. Total energy = 5339.6325 kcal/mol (5333.2935 without restraints) Performing minimization step: 3885. Total energy = 5338.6250 kcal/mol (5332.2867 without restraints) Performing minimization step: 3886. Total energy = 5337.6179 kcal/mol (5331.2803 without restraints) Performing minimization step: 3887. Total energy = 5336.6112 kcal/mol (5330.2744 without restraints) Performing minimization step: 3888. Total energy = 5335.6055 kcal/mol (5329.2694 without restraints) Performing minimization step: 3889. Total energy = 5334.6002 kcal/mol (5328.2649 without restraints) Performing minimization step: 3890. Total energy = 5333.5957 kcal/mol (5327.2612 without restraints) Performing minimization step: 3891. Total energy = 5332.5920 kcal/mol (5326.2582 without restraints) Performing minimization step: 3892. Total energy = 5331.5885 kcal/mol (5325.2556 without restraints) Performing minimization step: 3893. Total energy = 5330.5858 kcal/mol (5324.2535 without restraints) Performing minimization step: 3894. Total energy = 5329.5840 kcal/mol (5323.2526 without restraints) Performing minimization step: 3895. Total energy = 5328.5826 kcal/mol (5322.2520 without restraints) Performing minimization step: 3896. Total energy = 5327.5822 kcal/mol (5321.2523 without restraints) Performing minimization step: 3897. Total energy = 5326.5820 kcal/mol (5320.2528 without restraints) Performing minimization step: 3898. Total energy = 5325.5831 kcal/mol (5319.2547 without restraints) Performing minimization step: 3899. Total energy = 5324.5848 kcal/mol (5318.2572 without restraints) Performing minimization step: 3900. Total energy = 5323.5868 kcal/mol (5317.2599 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 5322.5894 kcal/mol (5316.2633 without restraints) Performing minimization step: 3902. Total energy = 5321.5927 kcal/mol (5315.2674 without restraints) Performing minimization step: 3903. Total energy = 5320.5966 kcal/mol (5314.2721 without restraints) Performing minimization step: 3904. Total energy = 5319.6011 kcal/mol (5313.2773 without restraints) Performing minimization step: 3905. Total energy = 5318.6068 kcal/mol (5312.2837 without restraints) Performing minimization step: 3906. Total energy = 5317.6126 kcal/mol (5311.2904 without restraints) Performing minimization step: 3907. Total energy = 5316.6190 kcal/mol (5310.2975 without restraints) Performing minimization step: 3908. Total energy = 5315.6261 kcal/mol (5309.3052 without restraints) Performing minimization step: 3909. Total energy = 5314.6334 kcal/mol (5308.3134 without restraints) Performing minimization step: 3910. Total energy = 5313.6420 kcal/mol (5307.3232 without restraints) Performing minimization step: 3911. Total energy = 5312.6513 kcal/mol (5306.3328 without restraints) Performing minimization step: 3912. Total energy = 5311.6609 kcal/mol (5305.3431 without restraints) Performing minimization step: 3913. Total energy = 5310.6714 kcal/mol (5304.3544 without restraints) Performing minimization step: 3914. Total energy = 5309.6822 kcal/mol (5303.3661 without restraints) Performing minimization step: 3915. Total energy = 5308.6937 kcal/mol (5302.3782 without restraints) Performing minimization step: 3916. Total energy = 5307.7056 kcal/mol (5301.3909 without restraints) Performing minimization step: 3917. Total energy = 5306.7182 kcal/mol (5300.4042 without restraints) Performing minimization step: 3918. Total energy = 5305.7314 kcal/mol (5299.4183 without restraints) Performing minimization step: 3919. Total energy = 5304.7454 kcal/mol (5298.4329 without restraints) Performing minimization step: 3920. Total energy = 5303.7596 kcal/mol (5297.4479 without restraints) Performing minimization step: 3921. Total energy = 5302.7745 kcal/mol (5296.4635 without restraints) Performing minimization step: 3922. Total energy = 5301.7901 kcal/mol (5295.4799 without restraints) Performing minimization step: 3923. Total energy = 5300.8062 kcal/mol (5294.4967 without restraints) Performing minimization step: 3924. Total energy = 5299.8232 kcal/mol (5293.5144 without restraints) Performing minimization step: 3925. Total energy = 5298.8405 kcal/mol (5292.5326 without restraints) Performing minimization step: 3926. Total energy = 5297.8588 kcal/mol (5291.5517 without restraints) Performing minimization step: 3927. Total energy = 5296.8776 kcal/mol (5290.5711 without restraints) Performing minimization step: 3928. Total energy = 5295.8966 kcal/mol (5289.5908 without restraints) Performing minimization step: 3929. Total energy = 5294.9161 kcal/mol (5288.6110 without restraints) Performing minimization step: 3930. Total energy = 5293.9364 kcal/mol (5287.6320 without restraints) Performing minimization step: 3931. Total energy = 5292.9571 kcal/mol (5286.6535 without restraints) Performing minimization step: 3932. Total energy = 5291.9782 kcal/mol (5285.6754 without restraints) Performing minimization step: 3933. Total energy = 5291.0006 kcal/mol (5284.6985 without restraints) Performing minimization step: 3934. Total energy = 5290.0229 kcal/mol (5283.7216 without restraints) Performing minimization step: 3935. Total energy = 5289.0456 kcal/mol (5282.7451 without restraints) Performing minimization step: 3936. Total energy = 5288.0692 kcal/mol (5281.7693 without restraints) Performing minimization step: 3937. Total energy = 5287.0934 kcal/mol (5280.7943 without restraints) Performing minimization step: 3938. Total energy = 5286.1177 kcal/mol (5279.8194 without restraints) Performing minimization step: 3939. Total energy = 5285.1423 kcal/mol (5278.8446 without restraints) Performing minimization step: 3940. Total energy = 5284.1677 kcal/mol (5277.8707 without restraints) Performing minimization step: 3941. Total energy = 5283.1933 kcal/mol (5276.8970 without restraints) Performing minimization step: 3942. Total energy = 5282.2192 kcal/mol (5275.9236 without restraints) Performing minimization step: 3943. Total energy = 5281.2456 kcal/mol (5274.9508 without restraints) Performing minimization step: 3944. Total energy = 5280.2731 kcal/mol (5273.9790 without restraints) Performing minimization step: 3945. Total energy = 5279.3006 kcal/mol (5273.0072 without restraints) Performing minimization step: 3946. Total energy = 5278.3282 kcal/mol (5272.0355 without restraints) Performing minimization step: 3947. Total energy = 5277.3565 kcal/mol (5271.0645 without restraints) Performing minimization step: 3948. Total energy = 5276.3854 kcal/mol (5270.0943 without restraints) Performing minimization step: 3949. Total energy = 5275.4150 kcal/mol (5269.1245 without restraints) Performing minimization step: 3950. Total energy = 5274.4447 kcal/mol (5268.1550 without restraints) Performing minimization step: 3951. Total energy = 5273.4752 kcal/mol (5267.1861 without restraints) Performing minimization step: 3952. Total energy = 5272.5058 kcal/mol (5266.2175 without restraints) Performing minimization step: 3953. Total energy = 5271.5367 kcal/mol (5265.2491 without restraints) Performing minimization step: 3954. Total energy = 5270.5684 kcal/mol (5264.2818 without restraints) Performing minimization step: 3955. Total energy = 5269.6006 kcal/mol (5263.3146 without restraints) Performing minimization step: 3956. Total energy = 5268.6332 kcal/mol (5262.3477 without restraints) Performing minimization step: 3957. Total energy = 5267.6661 kcal/mol (5261.3814 without restraints) Performing minimization step: 3958. Total energy = 5266.6992 kcal/mol (5260.4152 without restraints) Performing minimization step: 3959. Total energy = 5265.7328 kcal/mol (5259.4496 without restraints) Performing minimization step: 3960. Total energy = 5264.7669 kcal/mol (5258.4844 without restraints) Performing minimization step: 3961. Total energy = 5263.8013 kcal/mol (5257.5194 without restraints) Performing minimization step: 3962. Total energy = 5262.8359 kcal/mol (5256.5547 without restraints) Performing minimization step: 3963. Total energy = 5261.8709 kcal/mol (5255.5904 without restraints) Performing minimization step: 3964. Total energy = 5260.9062 kcal/mol (5254.6263 without restraints) Performing minimization step: 3965. Total energy = 5259.9418 kcal/mol (5253.6627 without restraints) Performing minimization step: 3966. Total energy = 5258.9777 kcal/mol (5252.6993 without restraints) Performing minimization step: 3967. Total energy = 5258.0141 kcal/mol (5251.7364 without restraints) Performing minimization step: 3968. Total energy = 5257.0509 kcal/mol (5250.7739 without restraints) Performing minimization step: 3969. Total energy = 5256.0883 kcal/mol (5249.8121 without restraints) Performing minimization step: 3970. Total energy = 5255.1262 kcal/mol (5248.8505 without restraints) Performing minimization step: 3971. Total energy = 5254.1638 kcal/mol (5247.8888 without restraints) Performing minimization step: 3972. Total energy = 5253.2021 kcal/mol (5246.9279 without restraints) Performing minimization step: 3973. Total energy = 5252.2404 kcal/mol (5245.9668 without restraints) Performing minimization step: 3974. Total energy = 5251.2785 kcal/mol (5245.0056 without restraints) Performing minimization step: 3975. Total energy = 5250.3172 kcal/mol (5244.0450 without restraints) Performing minimization step: 3976. Total energy = 5249.3565 kcal/mol (5243.0850 without restraints) Performing minimization step: 3977. Total energy = 5248.3959 kcal/mol (5242.1251 without restraints) Performing minimization step: 3978. Total energy = 5247.4356 kcal/mol (5241.1654 without restraints) Performing minimization step: 3979. Total energy = 5246.4756 kcal/mol (5240.2062 without restraints) Performing minimization step: 3980. Total energy = 5245.5157 kcal/mol (5239.2469 without restraints) Performing minimization step: 3981. Total energy = 5244.5559 kcal/mol (5238.2878 without restraints) Performing minimization step: 3982. Total energy = 5243.5965 kcal/mol (5237.3291 without restraints) Performing minimization step: 3983. Total energy = 5242.6376 kcal/mol (5236.3708 without restraints) Performing minimization step: 3984. Total energy = 5241.6789 kcal/mol (5235.4128 without restraints) Performing minimization step: 3985. Total energy = 5240.7204 kcal/mol (5234.4550 without restraints) Performing minimization step: 3986. Total energy = 5239.7619 kcal/mol (5233.4971 without restraints) Performing minimization step: 3987. Total energy = 5238.8033 kcal/mol (5232.5392 without restraints) Performing minimization step: 3988. Total energy = 5237.8452 kcal/mol (5231.5818 without restraints) Performing minimization step: 3989. Total energy = 5236.8870 kcal/mol (5230.6242 without restraints) Performing minimization step: 3990. Total energy = 5235.9289 kcal/mol (5229.6668 without restraints) Performing minimization step: 3991. Total energy = 5234.9712 kcal/mol (5228.7097 without restraints) Performing minimization step: 3992. Total energy = 5234.0135 kcal/mol (5227.7529 without restraints) Performing minimization step: 3993. Total energy = 5233.0559 kcal/mol (5226.7957 without restraints) Performing minimization step: 3994. Total energy = 5232.0985 kcal/mol (5225.8390 without restraints) Performing minimization step: 3995. Total energy = 5231.1414 kcal/mol (5224.8825 without restraints) Performing minimization step: 3996. Total energy = 5230.1843 kcal/mol (5223.9262 without restraints) Performing minimization step: 3997. Total energy = 5229.2274 kcal/mol (5222.9699 without restraints) Performing minimization step: 3998. Total energy = 5228.2702 kcal/mol (5222.0133 without restraints) Performing minimization step: 3999. Total energy = 5227.3134 kcal/mol (5221.0571 without restraints) Performing minimization step: 4000. Total energy = 5226.3568 kcal/mol (5220.1013 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 5225.4001 kcal/mol (5219.1452 without restraints) Performing minimization step: 4002. Total energy = 5224.4433 kcal/mol (5218.1891 without restraints) Performing minimization step: 4003. Total energy = 5223.4867 kcal/mol (5217.2331 without restraints) Performing minimization step: 4004. Total energy = 5222.5301 kcal/mol (5216.2771 without restraints) Performing minimization step: 4005. Total energy = 5221.5736 kcal/mol (5215.3212 without restraints) Performing minimization step: 4006. Total energy = 5220.6166 kcal/mol (5214.3649 without restraints) Performing minimization step: 4007. Total energy = 5219.6599 kcal/mol (5213.4088 without restraints) Performing minimization step: 4008. Total energy = 5218.7034 kcal/mol (5212.4529 without restraints) Performing minimization step: 4009. Total energy = 5217.7464 kcal/mol (5211.4964 without restraints) Performing minimization step: 4010. Total energy = 5216.7895 kcal/mol (5210.5402 without restraints) Performing minimization step: 4011. Total energy = 5215.8327 kcal/mol (5209.5840 without restraints) Performing minimization step: 4012. Total energy = 5214.8756 kcal/mol (5208.6276 without restraints) Performing minimization step: 4013. Total energy = 5213.9188 kcal/mol (5207.6715 without restraints) Performing minimization step: 4014. Total energy = 5212.9621 kcal/mol (5206.7154 without restraints) Performing minimization step: 4015. Total energy = 5212.0049 kcal/mol (5205.7588 without restraints) Performing minimization step: 4016. Total energy = 5211.0477 kcal/mol (5204.8022 without restraints) Performing minimization step: 4017. Total energy = 5210.0908 kcal/mol (5203.8461 without restraints) Performing minimization step: 4018. Total energy = 5209.1342 kcal/mol (5202.8899 without restraints) Performing minimization step: 4019. Total energy = 5208.1768 kcal/mol (5201.9332 without restraints) Performing minimization step: 4020. Total energy = 5207.2195 kcal/mol (5200.9765 without restraints) Performing minimization step: 4021. Total energy = 5206.2620 kcal/mol (5200.0197 without restraints) Performing minimization step: 4022. Total energy = 5205.3043 kcal/mol (5199.0625 without restraints) Performing minimization step: 4023. Total energy = 5204.3462 kcal/mol (5198.1049 without restraints) Performing minimization step: 4024. Total energy = 5203.3880 kcal/mol (5197.1474 without restraints) Performing minimization step: 4025. Total energy = 5202.4301 kcal/mol (5196.1903 without restraints) Performing minimization step: 4026. Total energy = 5201.4716 kcal/mol (5195.2322 without restraints) Performing minimization step: 4027. Total energy = 5200.5127 kcal/mol (5194.2739 without restraints) Performing minimization step: 4028. Total energy = 5199.5537 kcal/mol (5193.3154 without restraints) Performing minimization step: 4029. Total energy = 5198.5943 kcal/mol (5192.3567 without restraints) Performing minimization step: 4030. Total energy = 5197.6347 kcal/mol (5191.3976 without restraints) Performing minimization step: 4031. Total energy = 5196.6749 kcal/mol (5190.4384 without restraints) Performing minimization step: 4032. Total energy = 5195.7148 kcal/mol (5189.4789 without restraints) Performing minimization step: 4033. Total energy = 5194.7549 kcal/mol (5188.5195 without restraints) Performing minimization step: 4034. Total energy = 5193.7944 kcal/mol (5187.5598 without restraints) Performing minimization step: 4035. Total energy = 5192.8337 kcal/mol (5186.5996 without restraints) Performing minimization step: 4036. Total energy = 5191.8724 kcal/mol (5185.6388 without restraints) Performing minimization step: 4037. Total energy = 5190.9112 kcal/mol (5184.6781 without restraints) Performing minimization step: 4038. Total energy = 5189.9494 kcal/mol (5183.7169 without restraints) Performing minimization step: 4039. Total energy = 5188.9871 kcal/mol (5182.7552 without restraints) Performing minimization step: 4040. Total energy = 5188.0246 kcal/mol (5181.7933 without restraints) Performing minimization step: 4041. Total energy = 5187.0618 kcal/mol (5180.8311 without restraints) Performing minimization step: 4042. Total energy = 5186.0990 kcal/mol (5179.8689 without restraints) Performing minimization step: 4043. Total energy = 5185.1355 kcal/mol (5178.9059 without restraints) Performing minimization step: 4044. Total energy = 5184.1720 kcal/mol (5177.9429 without restraints) Performing minimization step: 4045. Total energy = 5183.2077 kcal/mol (5176.9793 without restraints) Performing minimization step: 4046. Total energy = 5182.2431 kcal/mol (5176.0152 without restraints) Performing minimization step: 4047. Total energy = 5181.2781 kcal/mol (5175.0507 without restraints) Performing minimization step: 4048. Total energy = 5180.3128 kcal/mol (5174.0860 without restraints) Performing minimization step: 4049. Total energy = 5179.3470 kcal/mol (5173.1207 without restraints) Performing minimization step: 4050. Total energy = 5178.3810 kcal/mol (5172.1554 without restraints) Performing minimization step: 4051. Total energy = 5177.4144 kcal/mol (5171.1893 without restraints) Performing minimization step: 4052. Total energy = 5176.4474 kcal/mol (5170.2228 without restraints) Performing minimization step: 4053. Total energy = 5175.4801 kcal/mol (5169.2562 without restraints) Performing minimization step: 4054. Total energy = 5174.5127 kcal/mol (5168.2891 without restraints) Performing minimization step: 4055. Total energy = 5173.5444 kcal/mol (5167.3215 without restraints) Performing minimization step: 4056. Total energy = 5172.5756 kcal/mol (5166.3531 without restraints) Performing minimization step: 4057. Total energy = 5171.6062 kcal/mol (5165.3843 without restraints) Performing minimization step: 4058. Total energy = 5170.6363 kcal/mol (5164.4150 without restraints) Performing minimization step: 4059. Total energy = 5169.6662 kcal/mol (5163.4453 without restraints) Performing minimization step: 4060. Total energy = 5168.6955 kcal/mol (5162.4752 without restraints) Performing minimization step: 4061. Total energy = 5167.7242 kcal/mol (5161.5044 without restraints) Performing minimization step: 4062. Total energy = 5166.7529 kcal/mol (5160.5337 without restraints) Performing minimization step: 4063. Total energy = 5165.7806 kcal/mol (5159.5619 without restraints) Performing minimization step: 4064. Total energy = 5164.8082 kcal/mol (5158.5901 without restraints) Performing minimization step: 4065. Total energy = 5163.8351 kcal/mol (5157.6174 without restraints) Performing minimization step: 4066. Total energy = 5162.8618 kcal/mol (5156.6447 without restraints) Performing minimization step: 4067. Total energy = 5161.8872 kcal/mol (5155.6705 without restraints) Performing minimization step: 4068. Total energy = 5160.9131 kcal/mol (5154.6970 without restraints) Performing minimization step: 4069. Total energy = 5159.9378 kcal/mol (5153.7222 without restraints) Performing minimization step: 4070. Total energy = 5158.9623 kcal/mol (5152.7473 without restraints) Performing minimization step: 4071. Total energy = 5157.9863 kcal/mol (5151.7717 without restraints) Performing minimization step: 4072. Total energy = 5157.0094 kcal/mol (5150.7954 without restraints) Performing minimization step: 4073. Total energy = 5156.0321 kcal/mol (5149.8186 without restraints) Performing minimization step: 4074. Total energy = 5155.0543 kcal/mol (5148.8413 without restraints) Performing minimization step: 4075. Total energy = 5154.0761 kcal/mol (5147.8637 without restraints) Performing minimization step: 4076. Total energy = 5153.0975 kcal/mol (5146.8855 without restraints) Performing minimization step: 4077. Total energy = 5152.1182 kcal/mol (5145.9069 without restraints) Performing minimization step: 4078. Total energy = 5151.1382 kcal/mol (5144.9273 without restraints) Performing minimization step: 4079. Total energy = 5150.1579 kcal/mol (5143.9475 without restraints) Performing minimization step: 4080. Total energy = 5149.1773 kcal/mol (5142.9675 without restraints) Performing minimization step: 4081. Total energy = 5148.1959 kcal/mol (5141.9865 without restraints) Performing minimization step: 4082. Total energy = 5147.2140 kcal/mol (5141.0051 without restraints) Performing minimization step: 4083. Total energy = 5146.2317 kcal/mol (5140.0233 without restraints) Performing minimization step: 4084. Total energy = 5145.2489 kcal/mol (5139.0410 without restraints) Performing minimization step: 4085. Total energy = 5144.2656 kcal/mol (5138.0583 without restraints) Performing minimization step: 4086. Total energy = 5143.2820 kcal/mol (5137.0751 without restraints) Performing minimization step: 4087. Total energy = 5142.2978 kcal/mol (5136.0915 without restraints) Performing minimization step: 4088. Total energy = 5141.3128 kcal/mol (5135.1071 without restraints) Performing minimization step: 4089. Total energy = 5140.3280 kcal/mol (5134.1227 without restraints) Performing minimization step: 4090. Total energy = 5139.3424 kcal/mol (5133.1376 without restraints) Performing minimization step: 4091. Total energy = 5138.3563 kcal/mol (5132.1520 without restraints) Performing minimization step: 4092. Total energy = 5137.3698 kcal/mol (5131.1659 without restraints) Performing minimization step: 4093. Total energy = 5136.3828 kcal/mol (5130.1796 without restraints) Performing minimization step: 4094. Total energy = 5135.3956 kcal/mol (5129.1929 without restraints) Performing minimization step: 4095. Total energy = 5134.4080 kcal/mol (5128.2058 without restraints) Performing minimization step: 4096. Total energy = 5133.4201 kcal/mol (5127.2184 without restraints) Performing minimization step: 4097. Total energy = 5132.4317 kcal/mol (5126.2305 without restraints) Performing minimization step: 4098. Total energy = 5131.4433 kcal/mol (5125.2427 without restraints) Performing minimization step: 4099. Total energy = 5130.4542 kcal/mol (5124.2540 without restraints) Performing minimization step: 4100. Total energy = 5129.4647 kcal/mol (5123.2651 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 5128.4749 kcal/mol (5122.2758 without restraints) Performing minimization step: 4102. Total energy = 5127.4848 kcal/mol (5121.2863 without restraints) Performing minimization step: 4103. Total energy = 5126.4951 kcal/mol (5120.2970 without restraints) Performing minimization step: 4104. Total energy = 5125.5045 kcal/mol (5119.3069 without restraints) Performing minimization step: 4105. Total energy = 5124.5135 kcal/mol (5118.3165 without restraints) Performing minimization step: 4106. Total energy = 5123.5224 kcal/mol (5117.3260 without restraints) Performing minimization step: 4107. Total energy = 5122.5311 kcal/mol (5116.3352 without restraints) Performing minimization step: 4108. Total energy = 5121.5397 kcal/mol (5115.3443 without restraints) Performing minimization step: 4109. Total energy = 5120.5478 kcal/mol (5114.3529 without restraints) Performing minimization step: 4110. Total energy = 5119.5560 kcal/mol (5113.3617 without restraints) Performing minimization step: 4111. Total energy = 5118.5644 kcal/mol (5112.3706 without restraints) Performing minimization step: 4112. Total energy = 5117.5722 kcal/mol (5111.3790 without restraints) Performing minimization step: 4113. Total energy = 5116.5799 kcal/mol (5110.3872 without restraints) Performing minimization step: 4114. Total energy = 5115.5877 kcal/mol (5109.3955 without restraints) Performing minimization step: 4115. Total energy = 5114.5950 kcal/mol (5108.4034 without restraints) Performing minimization step: 4116. Total energy = 5113.6025 kcal/mol (5107.4115 without restraints) Performing minimization step: 4117. Total energy = 5112.6102 kcal/mol (5106.4196 without restraints) Performing minimization step: 4118. Total energy = 5111.6177 kcal/mol (5105.4277 without restraints) Performing minimization step: 4119. Total energy = 5110.6251 kcal/mol (5104.4357 without restraints) Performing minimization step: 4120. Total energy = 5109.6326 kcal/mol (5103.4437 without restraints) Performing minimization step: 4121. Total energy = 5108.6403 kcal/mol (5102.4519 without restraints) Performing minimization step: 4122. Total energy = 5107.6481 kcal/mol (5101.4604 without restraints) Performing minimization step: 4123. Total energy = 5106.6558 kcal/mol (5100.4685 without restraints) Performing minimization step: 4124. Total energy = 5105.6637 kcal/mol (5099.4770 without restraints) Performing minimization step: 4125. Total energy = 5104.6722 kcal/mol (5098.4860 without restraints) Performing minimization step: 4126. Total energy = 5103.6803 kcal/mol (5097.4948 without restraints) Performing minimization step: 4127. Total energy = 5102.6883 kcal/mol (5096.5034 without restraints) Performing minimization step: 4128. Total energy = 5101.6971 kcal/mol (5095.5127 without restraints) Performing minimization step: 4129. Total energy = 5100.7058 kcal/mol (5094.5219 without restraints) Performing minimization step: 4130. Total energy = 5099.7149 kcal/mol (5093.5316 without restraints) Performing minimization step: 4131. Total energy = 5098.7243 kcal/mol (5092.5416 without restraints) Performing minimization step: 4132. Total energy = 5097.7338 kcal/mol (5091.5516 without restraints) Performing minimization step: 4133. Total energy = 5096.7439 kcal/mol (5090.5623 without restraints) Performing minimization step: 4134. Total energy = 5095.7540 kcal/mol (5089.5730 without restraints) Performing minimization step: 4135. Total energy = 5094.7649 kcal/mol (5088.5847 without restraints) Performing minimization step: 4136. Total energy = 5093.7761 kcal/mol (5087.5963 without restraints) Performing minimization step: 4137. Total energy = 5092.7875 kcal/mol (5086.6082 without restraints) Performing minimization step: 4138. Total energy = 5091.7993 kcal/mol (5085.6208 without restraints) Performing minimization step: 4139. Total energy = 5090.8117 kcal/mol (5084.6336 without restraints) Performing minimization step: 4140. Total energy = 5089.8244 kcal/mol (5083.6470 without restraints) Performing minimization step: 4141. Total energy = 5088.8377 kcal/mol (5082.6609 without restraints) Performing minimization step: 4142. Total energy = 5087.8516 kcal/mol (5081.6754 without restraints) Performing minimization step: 4143. Total energy = 5086.8660 kcal/mol (5080.6904 without restraints) Performing minimization step: 4144. Total energy = 5085.8810 kcal/mol (5079.7060 without restraints) Performing minimization step: 4145. Total energy = 5084.8966 kcal/mol (5078.7222 without restraints) Performing minimization step: 4146. Total energy = 5083.9132 kcal/mol (5077.7395 without restraints) Performing minimization step: 4147. Total energy = 5082.9302 kcal/mol (5076.7570 without restraints) Performing minimization step: 4148. Total energy = 5081.9476 kcal/mol (5075.7750 without restraints) Performing minimization step: 4149. Total energy = 5080.9661 kcal/mol (5074.7942 without restraints) Performing minimization step: 4150. Total energy = 5079.9852 kcal/mol (5073.8139 without restraints) Performing minimization step: 4151. Total energy = 5079.0052 kcal/mol (5072.8345 without restraints) Performing minimization step: 4152. Total energy = 5078.0255 kcal/mol (5071.8555 without restraints) Performing minimization step: 4153. Total energy = 5077.0471 kcal/mol (5070.8777 without restraints) Performing minimization step: 4154. Total energy = 5076.0694 kcal/mol (5069.9006 without restraints) Performing minimization step: 4155. Total energy = 5075.0923 kcal/mol (5068.9241 without restraints) Performing minimization step: 4156. Total energy = 5074.1161 kcal/mol (5067.9486 without restraints) Performing minimization step: 4157. Total energy = 5073.1408 kcal/mol (5066.9739 without restraints) Performing minimization step: 4158. Total energy = 5072.1664 kcal/mol (5066.0002 without restraints) Performing minimization step: 4159. Total energy = 5071.1932 kcal/mol (5065.0278 without restraints) Performing minimization step: 4160. Total energy = 5070.2208 kcal/mol (5064.0559 without restraints) Performing minimization step: 4161. Total energy = 5069.2495 kcal/mol (5063.0852 without restraints) Performing minimization step: 4162. Total energy = 5068.2789 kcal/mol (5062.1153 without restraints) Performing minimization step: 4163. Total energy = 5067.3093 kcal/mol (5061.1464 without restraints) Performing minimization step: 4164. Total energy = 5066.3407 kcal/mol (5060.1784 without restraints) Performing minimization step: 4165. Total energy = 5065.3733 kcal/mol (5059.2118 without restraints) Performing minimization step: 4166. Total energy = 5064.4070 kcal/mol (5058.2460 without restraints) Performing minimization step: 4167. Total energy = 5063.4416 kcal/mol (5057.2813 without restraints) Performing minimization step: 4168. Total energy = 5062.4773 kcal/mol (5056.3177 without restraints) Performing minimization step: 4169. Total energy = 5061.5143 kcal/mol (5055.3554 without restraints) Performing minimization step: 4170. Total energy = 5060.5522 kcal/mol (5054.3939 without restraints) Performing minimization step: 4171. Total energy = 5059.5914 kcal/mol (5053.4338 without restraints) Performing minimization step: 4172. Total energy = 5058.6319 kcal/mol (5052.4749 without restraints) Performing minimization step: 4173. Total energy = 5057.6733 kcal/mol (5051.5170 without restraints) Performing minimization step: 4174. Total energy = 5056.7162 kcal/mol (5050.5606 without restraints) Performing minimization step: 4175. Total energy = 5055.7602 kcal/mol (5049.6053 without restraints) Performing minimization step: 4176. Total energy = 5054.8054 kcal/mol (5048.6514 without restraints) Performing minimization step: 4177. Total energy = 5053.8520 kcal/mol (5047.6985 without restraints) Performing minimization step: 4178. Total energy = 5052.8995 kcal/mol (5046.7467 without restraints) Performing minimization step: 4179. Total energy = 5051.9484 kcal/mol (5045.7962 without restraints) Performing minimization step: 4180. Total energy = 5050.9982 kcal/mol (5044.8468 without restraints) Performing minimization step: 4181. Total energy = 5050.0496 kcal/mol (5043.8988 without restraints) Performing minimization step: 4182. Total energy = 5049.1023 kcal/mol (5042.9522 without restraints) Performing minimization step: 4183. Total energy = 5048.1563 kcal/mol (5042.0069 without restraints) Performing minimization step: 4184. Total energy = 5047.2116 kcal/mol (5041.0629 without restraints) Performing minimization step: 4185. Total energy = 5046.2684 kcal/mol (5040.1205 without restraints) Performing minimization step: 4186. Total energy = 5045.3265 kcal/mol (5039.1792 without restraints) Performing minimization step: 4187. Total energy = 5044.3858 kcal/mol (5038.2393 without restraints) Performing minimization step: 4188. Total energy = 5043.4466 kcal/mol (5037.3007 without restraints) Performing minimization step: 4189. Total energy = 5042.5087 kcal/mol (5036.3635 without restraints) Performing minimization step: 4190. Total energy = 5041.5724 kcal/mol (5035.4279 without restraints) Performing minimization step: 4191. Total energy = 5040.6373 kcal/mol (5034.4935 without restraints) Performing minimization step: 4192. Total energy = 5039.7038 kcal/mol (5033.5608 without restraints) Performing minimization step: 4193. Total energy = 5038.7718 kcal/mol (5032.6295 without restraints) Performing minimization step: 4194. Total energy = 5037.8413 kcal/mol (5031.6997 without restraints) Performing minimization step: 4195. Total energy = 5036.9117 kcal/mol (5030.7708 without restraints) Performing minimization step: 4196. Total energy = 5035.9840 kcal/mol (5029.8438 without restraints) Performing minimization step: 4197. Total energy = 5035.0576 kcal/mol (5028.9181 without restraints) Performing minimization step: 4198. Total energy = 5034.1323 kcal/mol (5027.9935 without restraints) Performing minimization step: 4199. Total energy = 5033.2088 kcal/mol (5027.0708 without restraints) Performing minimization step: 4200. Total energy = 5032.2868 kcal/mol (5026.1496 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 5031.3663 kcal/mol (5025.2297 without restraints) Performing minimization step: 4202. Total energy = 5030.4472 kcal/mol (5024.3114 without restraints) Performing minimization step: 4203. Total energy = 5029.5301 kcal/mol (5023.3951 without restraints) Performing minimization step: 4204. Total energy = 5028.6141 kcal/mol (5022.4797 without restraints) Performing minimization step: 4205. Total energy = 5027.6997 kcal/mol (5021.5659 without restraints) Performing minimization step: 4206. Total energy = 5026.7864 kcal/mol (5020.6535 without restraints) Performing minimization step: 4207. Total energy = 5025.8752 kcal/mol (5019.7430 without restraints) Performing minimization step: 4208. Total energy = 5024.9652 kcal/mol (5018.8337 without restraints) Performing minimization step: 4209. Total energy = 5024.0567 kcal/mol (5017.9261 without restraints) Performing minimization step: 4210. Total energy = 5023.1499 kcal/mol (5017.0199 without restraints) Performing minimization step: 4211. Total energy = 5022.2447 kcal/mol (5016.1154 without restraints) Performing minimization step: 4212. Total energy = 5021.3410 kcal/mol (5015.2125 without restraints) Performing minimization step: 4213. Total energy = 5020.4386 kcal/mol (5014.3108 without restraints) Performing minimization step: 4214. Total energy = 5019.5379 kcal/mol (5013.4109 without restraints) Performing minimization step: 4215. Total energy = 5018.6386 kcal/mol (5012.5123 without restraints) Performing minimization step: 4216. Total energy = 5017.7409 kcal/mol (5011.6153 without restraints) Performing minimization step: 4217. Total energy = 5016.8448 kcal/mol (5010.7200 without restraints) Performing minimization step: 4218. Total energy = 5015.9500 kcal/mol (5009.8260 without restraints) Performing minimization step: 4219. Total energy = 5015.0568 kcal/mol (5008.9334 without restraints) Performing minimization step: 4220. Total energy = 5014.1652 kcal/mol (5008.0425 without restraints) Performing minimization step: 4221. Total energy = 5013.2753 kcal/mol (5007.1534 without restraints) Performing minimization step: 4222. Total energy = 5012.3868 kcal/mol (5006.2657 without restraints) Performing minimization step: 4223. Total energy = 5011.4997 kcal/mol (5005.3793 without restraints) Performing minimization step: 4224. Total energy = 5010.6144 kcal/mol (5004.4948 without restraints) Performing minimization step: 4225. Total energy = 5009.7309 kcal/mol (5003.6119 without restraints) Performing minimization step: 4226. Total energy = 5008.8485 kcal/mol (5002.7303 without restraints) Performing minimization step: 4227. Total energy = 5007.9678 kcal/mol (5001.8503 without restraints) Performing minimization step: 4228. Total energy = 5007.0886 kcal/mol (5000.9719 without restraints) Performing minimization step: 4229. Total energy = 5006.2112 kcal/mol (5000.0952 without restraints) Performing minimization step: 4230. Total energy = 5005.3359 kcal/mol (4999.2207 without restraints) Performing minimization step: 4231. Total energy = 5004.4614 kcal/mol (4998.3471 without restraints) Performing minimization step: 4232. Total energy = 5003.5886 kcal/mol (4997.4748 without restraints) Performing minimization step: 4233. Total energy = 5002.7170 kcal/mol (4996.6040 without restraints) Performing minimization step: 4234. Total energy = 5001.8471 kcal/mol (4995.7348 without restraints) Performing minimization step: 4235. Total energy = 5000.9786 kcal/mol (4994.8671 without restraints) Performing minimization step: 4236. Total energy = 5000.1117 kcal/mol (4994.0009 without restraints) Performing minimization step: 4237. Total energy = 4999.2466 kcal/mol (4993.1366 without restraints) Performing minimization step: 4238. Total energy = 4998.3830 kcal/mol (4992.2737 without restraints) Performing minimization step: 4239. Total energy = 4997.5207 kcal/mol (4991.4122 without restraints) Performing minimization step: 4240. Total energy = 4996.6595 kcal/mol (4990.5518 without restraints) Performing minimization step: 4241. Total energy = 4995.8007 kcal/mol (4989.6937 without restraints) Performing minimization step: 4242. Total energy = 4994.9431 kcal/mol (4988.8369 without restraints) Performing minimization step: 4243. Total energy = 4994.0871 kcal/mol (4987.9815 without restraints) Performing minimization step: 4244. Total energy = 4993.2328 kcal/mol (4987.1280 without restraints) Performing minimization step: 4245. Total energy = 4992.3801 kcal/mol (4986.2760 without restraints) Performing minimization step: 4246. Total energy = 4991.5286 kcal/mol (4985.4254 without restraints) Performing minimization step: 4247. Total energy = 4990.6785 kcal/mol (4984.5760 without restraints) Performing minimization step: 4248. Total energy = 4989.8297 kcal/mol (4983.7279 without restraints) Performing minimization step: 4249. Total energy = 4988.9825 kcal/mol (4982.8814 without restraints) Performing minimization step: 4250. Total energy = 4988.1370 kcal/mol (4982.0367 without restraints) Performing minimization step: 4251. Total energy = 4987.2931 kcal/mol (4981.1935 without restraints) Performing minimization step: 4252. Total energy = 4986.4513 kcal/mol (4980.3525 without restraints) Performing minimization step: 4253. Total energy = 4985.6102 kcal/mol (4979.5122 without restraints) Performing minimization step: 4254. Total energy = 4984.7706 kcal/mol (4978.6733 without restraints) Performing minimization step: 4255. Total energy = 4983.9322 kcal/mol (4977.8356 without restraints) Performing minimization step: 4256. Total energy = 4983.0954 kcal/mol (4976.9997 without restraints) Performing minimization step: 4257. Total energy = 4982.2600 kcal/mol (4976.1649 without restraints) Performing minimization step: 4258. Total energy = 4981.4266 kcal/mol (4975.3324 without restraints) Performing minimization step: 4259. Total energy = 4980.5943 kcal/mol (4974.5007 without restraints) Performing minimization step: 4260. Total energy = 4979.7632 kcal/mol (4973.6704 without restraints) Performing minimization step: 4261. Total energy = 4978.9340 kcal/mol (4972.8420 without restraints) Performing minimization step: 4262. Total energy = 4978.1061 kcal/mol (4972.0147 without restraints) Performing minimization step: 4263. Total energy = 4977.2792 kcal/mol (4971.1886 without restraints) Performing minimization step: 4264. Total energy = 4976.4538 kcal/mol (4970.3639 without restraints) Performing minimization step: 4265. Total energy = 4975.6305 kcal/mol (4969.5414 without restraints) Performing minimization step: 4266. Total energy = 4974.8086 kcal/mol (4968.7202 without restraints) Performing minimization step: 4267. Total energy = 4973.9878 kcal/mol (4967.9002 without restraints) Performing minimization step: 4268. Total energy = 4973.1680 kcal/mol (4967.0812 without restraints) Performing minimization step: 4269. Total energy = 4972.3501 kcal/mol (4966.2640 without restraints) Performing minimization step: 4270. Total energy = 4971.5334 kcal/mol (4965.4480 without restraints) Performing minimization step: 4271. Total energy = 4970.7181 kcal/mol (4964.6335 without restraints) Performing minimization step: 4272. Total energy = 4969.9045 kcal/mol (4963.8207 without restraints) Performing minimization step: 4273. Total energy = 4969.0920 kcal/mol (4963.0089 without restraints) Performing minimization step: 4274. Total energy = 4968.2810 kcal/mol (4962.1987 without restraints) Performing minimization step: 4275. Total energy = 4967.4714 kcal/mol (4961.3898 without restraints) Performing minimization step: 4276. Total energy = 4966.6630 kcal/mol (4960.5821 without restraints) Performing minimization step: 4277. Total energy = 4965.8561 kcal/mol (4959.7760 without restraints) Performing minimization step: 4278. Total energy = 4965.0506 kcal/mol (4958.9712 without restraints) Performing minimization step: 4279. Total energy = 4964.2462 kcal/mol (4958.1675 without restraints) Performing minimization step: 4280. Total energy = 4963.4432 kcal/mol (4957.3654 without restraints) Performing minimization step: 4281. Total energy = 4962.6416 kcal/mol (4956.5644 without restraints) Performing minimization step: 4282. Total energy = 4961.8414 kcal/mol (4955.7650 without restraints) Performing minimization step: 4283. Total energy = 4961.0426 kcal/mol (4954.9669 without restraints) Performing minimization step: 4284. Total energy = 4960.2449 kcal/mol (4954.1699 without restraints) Performing minimization step: 4285. Total energy = 4959.4485 kcal/mol (4953.3743 without restraints) Performing minimization step: 4286. Total energy = 4958.6533 kcal/mol (4952.5799 without restraints) Performing minimization step: 4287. Total energy = 4957.8597 kcal/mol (4951.7870 without restraints) Performing minimization step: 4288. Total energy = 4957.0672 kcal/mol (4950.9952 without restraints) Performing minimization step: 4289. Total energy = 4956.2763 kcal/mol (4950.2050 without restraints) Performing minimization step: 4290. Total energy = 4955.4863 kcal/mol (4949.4158 without restraints) Performing minimization step: 4291. Total energy = 4954.6978 kcal/mol (4948.6281 without restraints) Performing minimization step: 4292. Total energy = 4953.9106 kcal/mol (4947.8416 without restraints) Performing minimization step: 4293. Total energy = 4953.1244 kcal/mol (4947.0561 without restraints) Performing minimization step: 4294. Total energy = 4952.3396 kcal/mol (4946.2722 without restraints) Performing minimization step: 4295. Total energy = 4951.5559 kcal/mol (4945.4891 without restraints) Performing minimization step: 4296. Total energy = 4950.7738 kcal/mol (4944.7077 without restraints) Performing minimization step: 4297. Total energy = 4949.9926 kcal/mol (4943.9273 without restraints) Performing minimization step: 4298. Total energy = 4949.2129 kcal/mol (4943.1484 without restraints) Performing minimization step: 4299. Total energy = 4948.4345 kcal/mol (4942.3709 without restraints) Performing minimization step: 4300. Total energy = 4947.6573 kcal/mol (4941.5942 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 4946.8817 kcal/mol (4940.8193 without restraints) Performing minimization step: 4302. Total energy = 4946.1068 kcal/mol (4940.0452 without restraints) Performing minimization step: 4303. Total energy = 4945.3330 kcal/mol (4939.2721 without restraints) Performing minimization step: 4304. Total energy = 4944.5602 kcal/mol (4938.5001 without restraints) Performing minimization step: 4305. Total energy = 4943.7891 kcal/mol (4937.7298 without restraints) Performing minimization step: 4306. Total energy = 4943.0192 kcal/mol (4936.9606 without restraints) Performing minimization step: 4307. Total energy = 4942.2504 kcal/mol (4936.1925 without restraints) Performing minimization step: 4308. Total energy = 4941.4826 kcal/mol (4935.4255 without restraints) Performing minimization step: 4309. Total energy = 4940.7164 kcal/mol (4934.6600 without restraints) Performing minimization step: 4310. Total energy = 4939.9510 kcal/mol (4933.8954 without restraints) Performing minimization step: 4311. Total energy = 4939.1870 kcal/mol (4933.1322 without restraints) Performing minimization step: 4312. Total energy = 4938.4240 kcal/mol (4932.3698 without restraints) Performing minimization step: 4313. Total energy = 4937.6620 kcal/mol (4931.6086 without restraints) Performing minimization step: 4314. Total energy = 4936.9018 kcal/mol (4930.8491 without restraints) Performing minimization step: 4315. Total energy = 4936.1422 kcal/mol (4930.0901 without restraints) Performing minimization step: 4316. Total energy = 4935.3842 kcal/mol (4929.3329 without restraints) Performing minimization step: 4317. Total energy = 4934.6270 kcal/mol (4928.5765 without restraints) Performing minimization step: 4318. Total energy = 4933.8708 kcal/mol (4927.8210 without restraints) Performing minimization step: 4319. Total energy = 4933.1162 kcal/mol (4927.0671 without restraints) Performing minimization step: 4320. Total energy = 4932.3625 kcal/mol (4926.3144 without restraints) Performing minimization step: 4321. Total energy = 4931.6096 kcal/mol (4925.5620 without restraints) Performing minimization step: 4322. Total energy = 4930.8579 kcal/mol (4924.8111 without restraints) Performing minimization step: 4323. Total energy = 4930.1073 kcal/mol (4924.0612 without restraints) Performing minimization step: 4324. Total energy = 4929.3577 kcal/mol (4923.3123 without restraints) Performing minimization step: 4325. Total energy = 4928.6091 kcal/mol (4922.5645 without restraints) Performing minimization step: 4326. Total energy = 4927.8621 kcal/mol (4921.8182 without restraints) Performing minimization step: 4327. Total energy = 4927.1157 kcal/mol (4921.0726 without restraints) Performing minimization step: 4328. Total energy = 4926.3706 kcal/mol (4920.3282 without restraints) Performing minimization step: 4329. Total energy = 4925.6264 kcal/mol (4919.5847 without restraints) Performing minimization step: 4330. Total energy = 4924.8832 kcal/mol (4918.8423 without restraints) Performing minimization step: 4331. Total energy = 4924.1411 kcal/mol (4918.1009 without restraints) Performing minimization step: 4332. Total energy = 4923.4002 kcal/mol (4917.3608 without restraints) Performing minimization step: 4333. Total energy = 4922.6605 kcal/mol (4916.6217 without restraints) Performing minimization step: 4334. Total energy = 4921.9215 kcal/mol (4915.8834 without restraints) Performing minimization step: 4335. Total energy = 4921.1838 kcal/mol (4915.1466 without restraints) Performing minimization step: 4336. Total energy = 4920.4473 kcal/mol (4914.4107 without restraints) Performing minimization step: 4337. Total energy = 4919.7114 kcal/mol (4913.6755 without restraints) Performing minimization step: 4338. Total energy = 4918.9765 kcal/mol (4912.9414 without restraints) Performing minimization step: 4339. Total energy = 4918.2429 kcal/mol (4912.2085 without restraints) Performing minimization step: 4340. Total energy = 4917.5104 kcal/mol (4911.4769 without restraints) Performing minimization step: 4341. Total energy = 4916.7788 kcal/mol (4910.7457 without restraints) Performing minimization step: 4342. Total energy = 4916.0484 kcal/mol (4910.0162 without restraints) Performing minimization step: 4343. Total energy = 4915.3190 kcal/mol (4909.2876 without restraints) Performing minimization step: 4344. Total energy = 4914.5902 kcal/mol (4908.5595 without restraints) Performing minimization step: 4345. Total energy = 4913.8626 kcal/mol (4907.8325 without restraints) Performing minimization step: 4346. Total energy = 4913.1359 kcal/mol (4907.1067 without restraints) Performing minimization step: 4347. Total energy = 4912.4099 kcal/mol (4906.3813 without restraints) Performing minimization step: 4348. Total energy = 4911.6849 kcal/mol (4905.6570 without restraints) Performing minimization step: 4349. Total energy = 4910.9611 kcal/mol (4904.9340 without restraints) Performing minimization step: 4350. Total energy = 4910.2379 kcal/mol (4904.2115 without restraints) Performing minimization step: 4351. Total energy = 4909.5158 kcal/mol (4903.4902 without restraints) Performing minimization step: 4352. Total energy = 4908.7951 kcal/mol (4902.7702 without restraints) Performing minimization step: 4353. Total energy = 4908.0751 kcal/mol (4902.0509 without restraints) Performing minimization step: 4354. Total energy = 4907.3561 kcal/mol (4901.3326 without restraints) Performing minimization step: 4355. Total energy = 4906.6381 kcal/mol (4900.6153 without restraints) Performing minimization step: 4356. Total energy = 4905.9207 kcal/mol (4899.8987 without restraints) Performing minimization step: 4357. Total energy = 4905.2043 kcal/mol (4899.1830 without restraints) Performing minimization step: 4358. Total energy = 4904.4888 kcal/mol (4898.4682 without restraints) Performing minimization step: 4359. Total energy = 4903.7741 kcal/mol (4897.7542 without restraints) Performing minimization step: 4360. Total energy = 4903.0604 kcal/mol (4897.0414 without restraints) Performing minimization step: 4361. Total energy = 4902.3478 kcal/mol (4896.3294 without restraints) Performing minimization step: 4362. Total energy = 4901.6365 kcal/mol (4895.6188 without restraints) Performing minimization step: 4363. Total energy = 4900.9258 kcal/mol (4894.9089 without restraints) Performing minimization step: 4364. Total energy = 4900.2162 kcal/mol (4894.2001 without restraints) Performing minimization step: 4365. Total energy = 4899.5072 kcal/mol (4893.4916 without restraints) Performing minimization step: 4366. Total energy = 4898.7989 kcal/mol (4892.7841 without restraints) Performing minimization step: 4367. Total energy = 4898.0915 kcal/mol (4892.0775 without restraints) Performing minimization step: 4368. Total energy = 4897.3850 kcal/mol (4891.3715 without restraints) Performing minimization step: 4369. Total energy = 4896.6795 kcal/mol (4890.6669 without restraints) Performing minimization step: 4370. Total energy = 4895.9747 kcal/mol (4889.9628 without restraints) Performing minimization step: 4371. Total energy = 4895.2711 kcal/mol (4889.2599 without restraints) Performing minimization step: 4372. Total energy = 4894.5681 kcal/mol (4888.5577 without restraints) Performing minimization step: 4373. Total energy = 4893.8669 kcal/mol (4887.8571 without restraints) Performing minimization step: 4374. Total energy = 4893.1656 kcal/mol (4887.1566 without restraints) Performing minimization step: 4375. Total energy = 4892.4658 kcal/mol (4886.4576 without restraints) Performing minimization step: 4376. Total energy = 4891.7664 kcal/mol (4885.7590 without restraints) Performing minimization step: 4377. Total energy = 4891.0678 kcal/mol (4885.0609 without restraints) Performing minimization step: 4378. Total energy = 4890.3701 kcal/mol (4884.3641 without restraints) Performing minimization step: 4379. Total energy = 4889.6731 kcal/mol (4883.6675 without restraints) Performing minimization step: 4380. Total energy = 4888.9768 kcal/mol (4882.9721 without restraints) Performing minimization step: 4381. Total energy = 4888.2822 kcal/mol (4882.2782 without restraints) Performing minimization step: 4382. Total energy = 4887.5878 kcal/mol (4881.5846 without restraints) Performing minimization step: 4383. Total energy = 4886.8940 kcal/mol (4880.8914 without restraints) Performing minimization step: 4384. Total energy = 4886.2015 kcal/mol (4880.1998 without restraints) Performing minimization step: 4385. Total energy = 4885.5095 kcal/mol (4879.5084 without restraints) Performing minimization step: 4386. Total energy = 4884.8186 kcal/mol (4878.8182 without restraints) Performing minimization step: 4387. Total energy = 4884.1282 kcal/mol (4878.1286 without restraints) Performing minimization step: 4388. Total energy = 4883.4388 kcal/mol (4877.4399 without restraints) Performing minimization step: 4389. Total energy = 4882.7502 kcal/mol (4876.7520 without restraints) Performing minimization step: 4390. Total energy = 4882.0626 kcal/mol (4876.0651 without restraints) Performing minimization step: 4391. Total energy = 4881.3754 kcal/mol (4875.3787 without restraints) Performing minimization step: 4392. Total energy = 4880.6890 kcal/mol (4874.6929 without restraints) Performing minimization step: 4393. Total energy = 4880.0041 kcal/mol (4874.0088 without restraints) Performing minimization step: 4394. Total energy = 4879.3194 kcal/mol (4873.3249 without restraints) Performing minimization step: 4395. Total energy = 4878.6356 kcal/mol (4872.6417 without restraints) Performing minimization step: 4396. Total energy = 4877.9529 kcal/mol (4871.9597 without restraints) Performing minimization step: 4397. Total energy = 4877.2706 kcal/mol (4871.2782 without restraints) Performing minimization step: 4398. Total energy = 4876.5889 kcal/mol (4870.5971 without restraints) Performing minimization step: 4399. Total energy = 4875.9081 kcal/mol (4869.9172 without restraints) Performing minimization step: 4400. Total energy = 4875.2280 kcal/mol (4869.2377 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 4874.5490 kcal/mol (4868.5594 without restraints) Performing minimization step: 4402. Total energy = 4873.8701 kcal/mol (4867.8813 without restraints) Performing minimization step: 4403. Total energy = 4873.1922 kcal/mol (4867.2040 without restraints) Performing minimization step: 4404. Total energy = 4872.5156 kcal/mol (4866.5281 without restraints) Performing minimization step: 4405. Total energy = 4871.8392 kcal/mol (4865.8526 without restraints) Performing minimization step: 4406. Total energy = 4871.1635 kcal/mol (4865.1775 without restraints) Performing minimization step: 4407. Total energy = 4870.4889 kcal/mol (4864.5036 without restraints) Performing minimization step: 4408. Total energy = 4869.8149 kcal/mol (4863.8303 without restraints) Performing minimization step: 4409. Total energy = 4869.1420 kcal/mol (4863.1583 without restraints) Performing minimization step: 4410. Total energy = 4868.4697 kcal/mol (4862.4868 without restraints) Performing minimization step: 4411. Total energy = 4867.7978 kcal/mol (4861.8154 without restraints) Performing minimization step: 4412. Total energy = 4867.1266 kcal/mol (4861.1449 without restraints) Performing minimization step: 4413. Total energy = 4866.4567 kcal/mol (4860.4759 without restraints) Performing minimization step: 4414. Total energy = 4865.7872 kcal/mol (4859.8069 without restraints) Performing minimization step: 4415. Total energy = 4865.1184 kcal/mol (4859.1388 without restraints) Performing minimization step: 4416. Total energy = 4864.4502 kcal/mol (4858.4714 without restraints) Performing minimization step: 4417. Total energy = 4863.7832 kcal/mol (4857.8051 without restraints) Performing minimization step: 4418. Total energy = 4863.1167 kcal/mol (4857.1393 without restraints) Performing minimization step: 4419. Total energy = 4862.4506 kcal/mol (4856.4739 without restraints) Performing minimization step: 4420. Total energy = 4861.7853 kcal/mol (4855.8095 without restraints) Performing minimization step: 4421. Total energy = 4861.1207 kcal/mol (4855.1455 without restraints) Performing minimization step: 4422. Total energy = 4860.4567 kcal/mol (4854.4822 without restraints) Performing minimization step: 4423. Total energy = 4859.7932 kcal/mol (4853.8193 without restraints) Performing minimization step: 4424. Total energy = 4859.1301 kcal/mol (4853.1570 without restraints) Performing minimization step: 4425. Total energy = 4858.4682 kcal/mol (4852.4958 without restraints) Performing minimization step: 4426. Total energy = 4857.8073 kcal/mol (4851.8357 without restraints) Performing minimization step: 4427. Total energy = 4857.1466 kcal/mol (4851.1756 without restraints) Performing minimization step: 4428. Total energy = 4856.4867 kcal/mol (4850.5164 without restraints) Performing minimization step: 4429. Total energy = 4855.8276 kcal/mol (4849.8581 without restraints) Performing minimization step: 4430. Total energy = 4855.1696 kcal/mol (4849.2008 without restraints) Performing minimization step: 4431. Total energy = 4854.5119 kcal/mol (4848.5439 without restraints) Performing minimization step: 4432. Total energy = 4853.8550 kcal/mol (4847.8876 without restraints) Performing minimization step: 4433. Total energy = 4853.1984 kcal/mol (4847.2317 without restraints) Performing minimization step: 4434. Total energy = 4852.5431 kcal/mol (4846.5771 without restraints) Performing minimization step: 4435. Total energy = 4851.8883 kcal/mol (4845.9230 without restraints) Performing minimization step: 4436. Total energy = 4851.2341 kcal/mol (4845.2695 without restraints) Performing minimization step: 4437. Total energy = 4850.5807 kcal/mol (4844.6169 without restraints) Performing minimization step: 4438. Total energy = 4849.9277 kcal/mol (4843.9645 without restraints) Performing minimization step: 4439. Total energy = 4849.2754 kcal/mol (4843.3130 without restraints) Performing minimization step: 4440. Total energy = 4848.6241 kcal/mol (4842.6624 without restraints) Performing minimization step: 4441. Total energy = 4847.9730 kcal/mol (4842.0120 without restraints) Performing minimization step: 4442. Total energy = 4847.3226 kcal/mol (4841.3623 without restraints) Performing minimization step: 4443. Total energy = 4846.6731 kcal/mol (4840.7136 without restraints) Performing minimization step: 4444. Total energy = 4846.0243 kcal/mol (4840.0656 without restraints) Performing minimization step: 4445. Total energy = 4845.3764 kcal/mol (4839.4183 without restraints) Performing minimization step: 4446. Total energy = 4844.7287 kcal/mol (4838.7712 without restraints) Performing minimization step: 4447. Total energy = 4844.0819 kcal/mol (4838.1255 without restraints) Performing minimization step: 4448. Total energy = 4843.4357 kcal/mol (4837.4796 without restraints) Performing minimization step: 4449. Total energy = 4842.7901 kcal/mol (4836.8348 without restraints) Performing minimization step: 4450. Total energy = 4842.1452 kcal/mol (4836.1906 without restraints) Performing minimization step: 4451. Total energy = 4841.5006 kcal/mol (4835.5467 without restraints) Performing minimization step: 4452. Total energy = 4840.8566 kcal/mol (4834.9034 without restraints) Performing minimization step: 4453. Total energy = 4840.2132 kcal/mol (4834.2607 without restraints) Performing minimization step: 4454. Total energy = 4839.5705 kcal/mol (4833.6187 without restraints) Performing minimization step: 4455. Total energy = 4838.9285 kcal/mol (4832.9774 without restraints) Performing minimization step: 4456. Total energy = 4838.2874 kcal/mol (4832.3370 without restraints) Performing minimization step: 4457. Total energy = 4837.6471 kcal/mol (4831.6975 without restraints) Performing minimization step: 4458. Total energy = 4837.0067 kcal/mol (4831.0577 without restraints) Performing minimization step: 4459. Total energy = 4836.3670 kcal/mol (4830.4188 without restraints) Performing minimization step: 4460. Total energy = 4835.7281 kcal/mol (4829.7806 without restraints) Performing minimization step: 4461. Total energy = 4835.0899 kcal/mol (4829.1431 without restraints) Performing minimization step: 4462. Total energy = 4834.4520 kcal/mol (4828.5060 without restraints) Performing minimization step: 4463. Total energy = 4833.8145 kcal/mol (4827.8692 without restraints) Performing minimization step: 4464. Total energy = 4833.1781 kcal/mol (4827.2336 without restraints) Performing minimization step: 4465. Total energy = 4832.5423 kcal/mol (4826.5984 without restraints) Performing minimization step: 4466. Total energy = 4831.9071 kcal/mol (4825.9638 without restraints) Performing minimization step: 4467. Total energy = 4831.2726 kcal/mol (4825.3301 without restraints) Performing minimization step: 4468. Total energy = 4830.6386 kcal/mol (4824.6969 without restraints) Performing minimization step: 4469. Total energy = 4830.0053 kcal/mol (4824.0643 without restraints) Performing minimization step: 4470. Total energy = 4829.3726 kcal/mol (4823.4322 without restraints) Performing minimization step: 4471. Total energy = 4828.7400 kcal/mol (4822.8003 without restraints) Performing minimization step: 4472. Total energy = 4828.1085 kcal/mol (4822.1695 without restraints) Performing minimization step: 4473. Total energy = 4827.4773 kcal/mol (4821.5390 without restraints) Performing minimization step: 4474. Total energy = 4826.8467 kcal/mol (4820.9092 without restraints) Performing minimization step: 4475. Total energy = 4826.2165 kcal/mol (4820.2797 without restraints) Performing minimization step: 4476. Total energy = 4825.5873 kcal/mol (4819.6513 without restraints) Performing minimization step: 4477. Total energy = 4824.9591 kcal/mol (4819.0236 without restraints) Performing minimization step: 4478. Total energy = 4824.3309 kcal/mol (4818.3962 without restraints) Performing minimization step: 4479. Total energy = 4823.7033 kcal/mol (4817.7692 without restraints) Performing minimization step: 4480. Total energy = 4823.0765 kcal/mol (4817.1432 without restraints) Performing minimization step: 4481. Total energy = 4822.4500 kcal/mol (4816.5174 without restraints) Performing minimization step: 4482. Total energy = 4821.8249 kcal/mol (4815.8930 without restraints) Performing minimization step: 4483. Total energy = 4821.1996 kcal/mol (4815.2684 without restraints) Performing minimization step: 4484. Total energy = 4820.5749 kcal/mol (4814.6444 without restraints) Performing minimization step: 4485. Total energy = 4819.9507 kcal/mol (4814.0209 without restraints) Performing minimization step: 4486. Total energy = 4819.3273 kcal/mol (4813.3983 without restraints) Performing minimization step: 4487. Total energy = 4818.7044 kcal/mol (4812.7762 without restraints) Performing minimization step: 4488. Total energy = 4818.0820 kcal/mol (4812.1544 without restraints) Performing minimization step: 4489. Total energy = 4817.4603 kcal/mol (4811.5334 without restraints) Performing minimization step: 4490. Total energy = 4816.8392 kcal/mol (4810.9131 without restraints) Performing minimization step: 4491. Total energy = 4816.2195 kcal/mol (4810.2940 without restraints) Performing minimization step: 4492. Total energy = 4815.5992 kcal/mol (4809.6745 without restraints) Performing minimization step: 4493. Total energy = 4814.9799 kcal/mol (4809.0558 without restraints) Performing minimization step: 4494. Total energy = 4814.3606 kcal/mol (4808.4372 without restraints) Performing minimization step: 4495. Total energy = 4813.7423 kcal/mol (4807.8197 without restraints) Performing minimization step: 4496. Total energy = 4813.1242 kcal/mol (4807.2022 without restraints) Performing minimization step: 4497. Total energy = 4812.5068 kcal/mol (4806.5855 without restraints) Performing minimization step: 4498. Total energy = 4811.8907 kcal/mol (4805.9702 without restraints) Performing minimization step: 4499. Total energy = 4811.2744 kcal/mol (4805.3545 without restraints) Performing minimization step: 4500. Total energy = 4810.6593 kcal/mol (4804.7402 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 4810.0442 kcal/mol (4804.1259 without restraints) Performing minimization step: 4502. Total energy = 4809.4295 kcal/mol (4803.5118 without restraints) Performing minimization step: 4503. Total energy = 4808.8155 kcal/mol (4802.8985 without restraints) Performing minimization step: 4504. Total energy = 4808.2018 kcal/mol (4802.2854 without restraints) Performing minimization step: 4505. Total energy = 4807.5888 kcal/mol (4801.6732 without restraints) Performing minimization step: 4506. Total energy = 4806.9764 kcal/mol (4801.0615 without restraints) Performing minimization step: 4507. Total energy = 4806.3645 kcal/mol (4800.4503 without restraints) Performing minimization step: 4508. Total energy = 4805.7534 kcal/mol (4799.8399 without restraints) Performing minimization step: 4509. Total energy = 4805.1426 kcal/mol (4799.2298 without restraints) Performing minimization step: 4510. Total energy = 4804.5321 kcal/mol (4798.6200 without restraints) Performing minimization step: 4511. Total energy = 4803.9226 kcal/mol (4798.0112 without restraints) Performing minimization step: 4512. Total energy = 4803.3135 kcal/mol (4797.4029 without restraints) Performing minimization step: 4513. Total energy = 4802.7050 kcal/mol (4796.7953 without restraints) Performing minimization step: 4514. Total energy = 4802.0970 kcal/mol (4796.1878 without restraints) Performing minimization step: 4515. Total energy = 4801.4896 kcal/mol (4795.5812 without restraints) Performing minimization step: 4516. Total energy = 4800.8829 kcal/mol (4794.9751 without restraints) Performing minimization step: 4517. Total energy = 4800.2764 kcal/mol (4794.3693 without restraints) Performing minimization step: 4518. Total energy = 4799.6705 kcal/mol (4793.7641 without restraints) Performing minimization step: 4519. Total energy = 4799.0653 kcal/mol (4793.1596 without restraints) Performing minimization step: 4520. Total energy = 4798.4602 kcal/mol (4792.5552 without restraints) Performing minimization step: 4521. Total energy = 4797.8557 kcal/mol (4791.9514 without restraints) Performing minimization step: 4522. Total energy = 4797.2518 kcal/mol (4791.3484 without restraints) Performing minimization step: 4523. Total energy = 4796.6486 kcal/mol (4790.7457 without restraints) Performing minimization step: 4524. Total energy = 4796.0457 kcal/mol (4790.1437 without restraints) Performing minimization step: 4525. Total energy = 4795.4434 kcal/mol (4789.5420 without restraints) Performing minimization step: 4526. Total energy = 4794.8419 kcal/mol (4788.9412 without restraints) Performing minimization step: 4527. Total energy = 4794.2408 kcal/mol (4788.3407 without restraints) Performing minimization step: 4528. Total energy = 4793.6401 kcal/mol (4787.7407 without restraints) Performing minimization step: 4529. Total energy = 4793.0397 kcal/mol (4787.1411 without restraints) Performing minimization step: 4530. Total energy = 4792.4399 kcal/mol (4786.5420 without restraints) Performing minimization step: 4531. Total energy = 4791.8408 kcal/mol (4785.9437 without restraints) Performing minimization step: 4532. Total energy = 4791.2422 kcal/mol (4785.3458 without restraints) Performing minimization step: 4533. Total energy = 4790.6446 kcal/mol (4784.7488 without restraints) Performing minimization step: 4534. Total energy = 4790.0472 kcal/mol (4784.1522 without restraints) Performing minimization step: 4535. Total energy = 4789.4502 kcal/mol (4783.5559 without restraints) Performing minimization step: 4536. Total energy = 4788.8538 kcal/mol (4782.9602 without restraints) Performing minimization step: 4537. Total energy = 4788.2577 kcal/mol (4782.3647 without restraints) Performing minimization step: 4538. Total energy = 4787.6625 kcal/mol (4781.7702 without restraints) Performing minimization step: 4539. Total energy = 4787.0674 kcal/mol (4781.1761 without restraints) Performing minimization step: 4540. Total energy = 4786.4726 kcal/mol (4780.5818 without restraints) Performing minimization step: 4541. Total energy = 4785.8782 kcal/mol (4779.9880 without restraints) Performing minimization step: 4542. Total energy = 4785.2843 kcal/mol (4779.3949 without restraints) Performing minimization step: 4543. Total energy = 4784.6910 kcal/mol (4778.8023 without restraints) Performing minimization step: 4544. Total energy = 4784.0980 kcal/mol (4778.2100 without restraints) Performing minimization step: 4545. Total energy = 4783.5058 kcal/mol (4777.6186 without restraints) Performing minimization step: 4546. Total energy = 4782.9142 kcal/mol (4777.0276 without restraints) Performing minimization step: 4547. Total energy = 4782.3231 kcal/mol (4776.4373 without restraints) Performing minimization step: 4548. Total energy = 4781.7328 kcal/mol (4775.8477 without restraints) Performing minimization step: 4549. Total energy = 4781.1427 kcal/mol (4775.2583 without restraints) Performing minimization step: 4550. Total energy = 4780.5530 kcal/mol (4774.6692 without restraints) Performing minimization step: 4551. Total energy = 4779.9637 kcal/mol (4774.0806 without restraints) Performing minimization step: 4552. Total energy = 4779.3745 kcal/mol (4773.4923 without restraints) Performing minimization step: 4553. Total energy = 4778.7866 kcal/mol (4772.9049 without restraints) Performing minimization step: 4554. Total energy = 4778.1987 kcal/mol (4772.3178 without restraints) Performing minimization step: 4555. Total energy = 4777.6113 kcal/mol (4771.7311 without restraints) Performing minimization step: 4556. Total energy = 4777.0247 kcal/mol (4771.1451 without restraints) Performing minimization step: 4557. Total energy = 4776.4385 kcal/mol (4770.5598 without restraints) Performing minimization step: 4558. Total energy = 4775.8529 kcal/mol (4769.9748 without restraints) Performing minimization step: 4559. Total energy = 4775.2674 kcal/mol (4769.3900 without restraints) Performing minimization step: 4560. Total energy = 4774.6828 kcal/mol (4768.8062 without restraints) Performing minimization step: 4561. Total energy = 4774.0987 kcal/mol (4768.2227 without restraints) Performing minimization step: 4562. Total energy = 4773.5147 kcal/mol (4767.6394 without restraints) Performing minimization step: 4563. Total energy = 4772.9310 kcal/mol (4767.0566 without restraints) Performing minimization step: 4564. Total energy = 4772.3481 kcal/mol (4766.4742 without restraints) Performing minimization step: 4565. Total energy = 4771.7657 kcal/mol (4765.8928 without restraints) Performing minimization step: 4566. Total energy = 4771.1838 kcal/mol (4765.3114 without restraints) Performing minimization step: 4567. Total energy = 4770.6024 kcal/mol (4764.7307 without restraints) Performing minimization step: 4568. Total energy = 4770.0212 kcal/mol (4764.1502 without restraints) Performing minimization step: 4569. Total energy = 4769.4409 kcal/mol (4763.5706 without restraints) Performing minimization step: 4570. Total energy = 4768.8611 kcal/mol (4762.9915 without restraints) Performing minimization step: 4571. Total energy = 4768.2821 kcal/mol (4762.4132 without restraints) Performing minimization step: 4572. Total energy = 4767.7032 kcal/mol (4761.8350 without restraints) Performing minimization step: 4573. Total energy = 4767.1246 kcal/mol (4761.2571 without restraints) Performing minimization step: 4574. Total energy = 4766.5460 kcal/mol (4760.6793 without restraints) Performing minimization step: 4575. Total energy = 4765.9684 kcal/mol (4760.1023 without restraints) Performing minimization step: 4576. Total energy = 4765.3914 kcal/mol (4759.5261 without restraints) Performing minimization step: 4577. Total energy = 4764.8147 kcal/mol (4758.9500 without restraints) Performing minimization step: 4578. Total energy = 4764.2385 kcal/mol (4758.3746 without restraints) Performing minimization step: 4579. Total energy = 4763.6630 kcal/mol (4757.7999 without restraints) Performing minimization step: 4580. Total energy = 4763.0880 kcal/mol (4757.2255 without restraints) Performing minimization step: 4581. Total energy = 4762.5130 kcal/mol (4756.6512 without restraints) Performing minimization step: 4582. Total energy = 4761.9387 kcal/mol (4756.0776 without restraints) Performing minimization step: 4583. Total energy = 4761.3648 kcal/mol (4755.5045 without restraints) Performing minimization step: 4584. Total energy = 4760.7913 kcal/mol (4754.9315 without restraints) Performing minimization step: 4585. Total energy = 4760.2182 kcal/mol (4754.3592 without restraints) Performing minimization step: 4586. Total energy = 4759.6458 kcal/mol (4753.7877 without restraints) Performing minimization step: 4587. Total energy = 4759.0736 kcal/mol (4753.2160 without restraints) Performing minimization step: 4588. Total energy = 4758.5018 kcal/mol (4752.6449 without restraints) Performing minimization step: 4589. Total energy = 4757.9307 kcal/mol (4752.0747 without restraints) Performing minimization step: 4590. Total energy = 4757.3601 kcal/mol (4751.5047 without restraints) Performing minimization step: 4591. Total energy = 4756.7895 kcal/mol (4750.9347 without restraints) Performing minimization step: 4592. Total energy = 4756.2199 kcal/mol (4750.3658 without restraints) Performing minimization step: 4593. Total energy = 4755.6506 kcal/mol (4749.7973 without restraints) Performing minimization step: 4594. Total energy = 4755.0815 kcal/mol (4749.2289 without restraints) Performing minimization step: 4595. Total energy = 4754.5128 kcal/mol (4748.6609 without restraints) Performing minimization step: 4596. Total energy = 4753.9451 kcal/mol (4748.0939 without restraints) Performing minimization step: 4597. Total energy = 4753.3774 kcal/mol (4747.5269 without restraints) Performing minimization step: 4598. Total energy = 4752.8109 kcal/mol (4746.9611 without restraints) Performing minimization step: 4599. Total energy = 4752.2440 kcal/mol (4746.3949 without restraints) Performing minimization step: 4600. Total energy = 4751.6777 kcal/mol (4745.8293 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4751.1117 kcal/mol (4745.2640 without restraints) Performing minimization step: 4602. Total energy = 4750.5465 kcal/mol (4744.6995 without restraints) Performing minimization step: 4603. Total energy = 4749.9811 kcal/mol (4744.1349 without restraints) Performing minimization step: 4604. Total energy = 4749.4165 kcal/mol (4743.5710 without restraints) Performing minimization step: 4605. Total energy = 4748.8523 kcal/mol (4743.0075 without restraints) Performing minimization step: 4606. Total energy = 4748.2885 kcal/mol (4742.4444 without restraints) Performing minimization step: 4607. Total energy = 4747.7253 kcal/mol (4741.8818 without restraints) Performing minimization step: 4608. Total energy = 4747.1624 kcal/mol (4741.3197 without restraints) Performing minimization step: 4609. Total energy = 4746.6004 kcal/mol (4740.7584 without restraints) Performing minimization step: 4610. Total energy = 4746.0387 kcal/mol (4740.1974 without restraints) Performing minimization step: 4611. Total energy = 4745.4774 kcal/mol (4739.6370 without restraints) Performing minimization step: 4612. Total energy = 4744.9167 kcal/mol (4739.0768 without restraints) Performing minimization step: 4613. Total energy = 4744.3560 kcal/mol (4738.5168 without restraints) Performing minimization step: 4614. Total energy = 4743.7958 kcal/mol (4737.9573 without restraints) Performing minimization step: 4615. Total energy = 4743.2361 kcal/mol (4737.3984 without restraints) Performing minimization step: 4616. Total energy = 4742.6773 kcal/mol (4736.8405 without restraints) Performing minimization step: 4617. Total energy = 4742.1188 kcal/mol (4736.2825 without restraints) Performing minimization step: 4618. Total energy = 4741.5603 kcal/mol (4735.7247 without restraints) Performing minimization step: 4619. Total energy = 4741.0021 kcal/mol (4735.1672 without restraints) Performing minimization step: 4620. Total energy = 4740.4447 kcal/mol (4734.6105 without restraints) Performing minimization step: 4621. Total energy = 4739.8877 kcal/mol (4734.0542 without restraints) Performing minimization step: 4622. Total energy = 4739.3310 kcal/mol (4733.4981 without restraints) Performing minimization step: 4623. Total energy = 4738.7745 kcal/mol (4732.9424 without restraints) Performing minimization step: 4624. Total energy = 4738.2189 kcal/mol (4732.3875 without restraints) Performing minimization step: 4625. Total energy = 4737.6635 kcal/mol (4731.8328 without restraints) Performing minimization step: 4626. Total energy = 4737.1082 kcal/mol (4731.2783 without restraints) Performing minimization step: 4627. Total energy = 4736.5536 kcal/mol (4730.7243 without restraints) Performing minimization step: 4628. Total energy = 4735.9998 kcal/mol (4730.1713 without restraints) Performing minimization step: 4629. Total energy = 4735.4465 kcal/mol (4729.6188 without restraints) Performing minimization step: 4630. Total energy = 4734.8931 kcal/mol (4729.0660 without restraints) Performing minimization step: 4631. Total energy = 4734.3402 kcal/mol (4728.5138 without restraints) Performing minimization step: 4632. Total energy = 4733.7880 kcal/mol (4727.9625 without restraints) Performing minimization step: 4633. Total energy = 4733.2367 kcal/mol (4727.4117 without restraints) Performing minimization step: 4634. Total energy = 4732.6850 kcal/mol (4726.8608 without restraints) Performing minimization step: 4635. Total energy = 4732.1338 kcal/mol (4726.3102 without restraints) Performing minimization step: 4636. Total energy = 4731.5830 kcal/mol (4725.7602 without restraints) Performing minimization step: 4637. Total energy = 4731.0327 kcal/mol (4725.2106 without restraints) Performing minimization step: 4638. Total energy = 4730.4831 kcal/mol (4724.6618 without restraints) Performing minimization step: 4639. Total energy = 4729.9339 kcal/mol (4724.1132 without restraints) Performing minimization step: 4640. Total energy = 4729.3849 kcal/mol (4723.5648 without restraints) Performing minimization step: 4641. Total energy = 4728.8370 kcal/mol (4723.0177 without restraints) Performing minimization step: 4642. Total energy = 4728.2888 kcal/mol (4722.4703 without restraints) Performing minimization step: 4643. Total energy = 4727.7415 kcal/mol (4721.9236 without restraints) Performing minimization step: 4644. Total energy = 4727.1940 kcal/mol (4721.3767 without restraints) Performing minimization step: 4645. Total energy = 4726.6471 kcal/mol (4720.8306 without restraints) Performing minimization step: 4646. Total energy = 4726.1005 kcal/mol (4720.2848 without restraints) Performing minimization step: 4647. Total energy = 4725.5543 kcal/mol (4719.7393 without restraints) Performing minimization step: 4648. Total energy = 4725.0092 kcal/mol (4719.1949 without restraints) Performing minimization step: 4649. Total energy = 4724.4639 kcal/mol (4718.6503 without restraints) Performing minimization step: 4650. Total energy = 4723.9190 kcal/mol (4718.1061 without restraints) Performing minimization step: 4651. Total energy = 4723.3744 kcal/mol (4717.5622 without restraints) Performing minimization step: 4652. Total energy = 4722.8303 kcal/mol (4717.0188 without restraints) Performing minimization step: 4653. Total energy = 4722.2866 kcal/mol (4716.4759 without restraints) Performing minimization step: 4654. Total energy = 4721.7437 kcal/mol (4715.9336 without restraints) Performing minimization step: 4655. Total energy = 4721.2011 kcal/mol (4715.3917 without restraints) Performing minimization step: 4656. Total energy = 4720.6586 kcal/mol (4714.8500 without restraints) Performing minimization step: 4657. Total energy = 4720.1166 kcal/mol (4714.3086 without restraints) Performing minimization step: 4658. Total energy = 4719.5747 kcal/mol (4713.7675 without restraints) Performing minimization step: 4659. Total energy = 4719.0335 kcal/mol (4713.2270 without restraints) Performing minimization step: 4660. Total energy = 4718.4929 kcal/mol (4712.6871 without restraints) Performing minimization step: 4661. Total energy = 4717.9524 kcal/mol (4712.1474 without restraints) Performing minimization step: 4662. Total energy = 4717.4127 kcal/mol (4711.6083 without restraints) Performing minimization step: 4663. Total energy = 4716.8735 kcal/mol (4711.0700 without restraints) Performing minimization step: 4664. Total energy = 4716.3345 kcal/mol (4710.5315 without restraints) Performing minimization step: 4665. Total energy = 4715.7961 kcal/mol (4709.9938 without restraints) Performing minimization step: 4666. Total energy = 4715.2581 kcal/mol (4709.4566 without restraints) Performing minimization step: 4667. Total energy = 4714.7202 kcal/mol (4708.9194 without restraints) Performing minimization step: 4668. Total energy = 4714.1828 kcal/mol (4708.3827 without restraints) Performing minimization step: 4669. Total energy = 4713.6458 kcal/mol (4707.8464 without restraints) Performing minimization step: 4670. Total energy = 4713.1094 kcal/mol (4707.3108 without restraints) Performing minimization step: 4671. Total energy = 4712.5735 kcal/mol (4706.7756 without restraints) Performing minimization step: 4672. Total energy = 4712.0378 kcal/mol (4706.2405 without restraints) Performing minimization step: 4673. Total energy = 4711.5024 kcal/mol (4705.7059 without restraints) Performing minimization step: 4674. Total energy = 4710.9674 kcal/mol (4705.1716 without restraints) Performing minimization step: 4675. Total energy = 4710.4329 kcal/mol (4704.6377 without restraints) Performing minimization step: 4676. Total energy = 4709.8984 kcal/mol (4704.1041 without restraints) Performing minimization step: 4677. Total energy = 4709.3646 kcal/mol (4703.5709 without restraints) Performing minimization step: 4678. Total energy = 4708.8311 kcal/mol (4703.0382 without restraints) Performing minimization step: 4679. Total energy = 4708.2980 kcal/mol (4702.5057 without restraints) Performing minimization step: 4680. Total energy = 4707.7659 kcal/mol (4701.9743 without restraints) Performing minimization step: 4681. Total energy = 4707.2338 kcal/mol (4701.4429 without restraints) Performing minimization step: 4682. Total energy = 4706.7023 kcal/mol (4700.9122 without restraints) Performing minimization step: 4683. Total energy = 4706.1713 kcal/mol (4700.3822 without restraints) Performing minimization step: 4684. Total energy = 4705.6404 kcal/mol (4699.8517 without restraints) Performing minimization step: 4685. Total energy = 4705.1091 kcal/mol (4699.3211 without restraints) Performing minimization step: 4686. Total energy = 4704.5791 kcal/mol (4698.7920 without restraints) Performing minimization step: 4687. Total energy = 4704.0492 kcal/mol (4698.2627 without restraints) Performing minimization step: 4688. Total energy = 4703.5201 kcal/mol (4697.7342 without restraints) Performing minimization step: 4689. Total energy = 4702.9911 kcal/mol (4697.2059 without restraints) Performing minimization step: 4690. Total energy = 4702.4624 kcal/mol (4696.6782 without restraints) Performing minimization step: 4691. Total energy = 4701.9343 kcal/mol (4696.1507 without restraints) Performing minimization step: 4692. Total energy = 4701.4064 kcal/mol (4695.6234 without restraints) Performing minimization step: 4693. Total energy = 4700.8792 kcal/mol (4695.0971 without restraints) Performing minimization step: 4694. Total energy = 4700.3521 kcal/mol (4694.5705 without restraints) Performing minimization step: 4695. Total energy = 4699.8254 kcal/mol (4694.0445 without restraints) Performing minimization step: 4696. Total energy = 4699.2989 kcal/mol (4693.5188 without restraints) Performing minimization step: 4697. Total energy = 4698.7733 kcal/mol (4692.9939 without restraints) Performing minimization step: 4698. Total energy = 4698.2477 kcal/mol (4692.4690 without restraints) Performing minimization step: 4699. Total energy = 4697.7225 kcal/mol (4691.9445 without restraints) Performing minimization step: 4700. Total energy = 4697.1978 kcal/mol (4691.4205 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4696.6735 kcal/mol (4690.8969 without restraints) Performing minimization step: 4702. Total energy = 4696.1491 kcal/mol (4690.3732 without restraints) Performing minimization step: 4703. Total energy = 4695.6255 kcal/mol (4689.8504 without restraints) Performing minimization step: 4704. Total energy = 4695.1021 kcal/mol (4689.3277 without restraints) Performing minimization step: 4705. Total energy = 4694.5795 kcal/mol (4688.8058 without restraints) Performing minimization step: 4706. Total energy = 4694.0571 kcal/mol (4688.2840 without restraints) Performing minimization step: 4707. Total energy = 4693.5350 kcal/mol (4687.7629 without restraints) Performing minimization step: 4708. Total energy = 4693.0133 kcal/mol (4687.2417 without restraints) Performing minimization step: 4709. Total energy = 4692.4920 kcal/mol (4686.7211 without restraints) Performing minimization step: 4710. Total energy = 4691.9705 kcal/mol (4686.2004 without restraints) Performing minimization step: 4711. Total energy = 4691.4497 kcal/mol (4685.6803 without restraints) Performing minimization step: 4712. Total energy = 4690.9294 kcal/mol (4685.1608 without restraints) Performing minimization step: 4713. Total energy = 4690.4096 kcal/mol (4684.6416 without restraints) Performing minimization step: 4714. Total energy = 4689.8906 kcal/mol (4684.1234 without restraints) Performing minimization step: 4715. Total energy = 4689.3715 kcal/mol (4683.6050 without restraints) Performing minimization step: 4716. Total energy = 4688.8531 kcal/mol (4683.0874 without restraints) Performing minimization step: 4717. Total energy = 4688.3345 kcal/mol (4682.5694 without restraints) Performing minimization step: 4718. Total energy = 4687.8165 kcal/mol (4682.0521 without restraints) Performing minimization step: 4719. Total energy = 4687.2991 kcal/mol (4681.5354 without restraints) Performing minimization step: 4720. Total energy = 4686.7815 kcal/mol (4681.0185 without restraints) Performing minimization step: 4721. Total energy = 4686.2647 kcal/mol (4680.5024 without restraints) Performing minimization step: 4722. Total energy = 4685.7482 kcal/mol (4679.9866 without restraints) Performing minimization step: 4723. Total energy = 4685.2323 kcal/mol (4679.4716 without restraints) Performing minimization step: 4724. Total energy = 4684.7169 kcal/mol (4678.9568 without restraints) Performing minimization step: 4725. Total energy = 4684.2013 kcal/mol (4678.4419 without restraints) Performing minimization step: 4726. Total energy = 4683.6865 kcal/mol (4677.9279 without restraints) Performing minimization step: 4727. Total energy = 4683.1719 kcal/mol (4677.4138 without restraints) Performing minimization step: 4728. Total energy = 4682.6579 kcal/mol (4676.9006 without restraints) Performing minimization step: 4729. Total energy = 4682.1442 kcal/mol (4676.3877 without restraints) Performing minimization step: 4730. Total energy = 4681.6307 kcal/mol (4675.8749 without restraints) Performing minimization step: 4731. Total energy = 4681.1180 kcal/mol (4675.3629 without restraints) Performing minimization step: 4732. Total energy = 4680.6053 kcal/mol (4674.8509 without restraints) Performing minimization step: 4733. Total energy = 4680.0930 kcal/mol (4674.3392 without restraints) Performing minimization step: 4734. Total energy = 4679.5809 kcal/mol (4673.8280 without restraints) Performing minimization step: 4735. Total energy = 4679.0694 kcal/mol (4673.3173 without restraints) Performing minimization step: 4736. Total energy = 4678.5584 kcal/mol (4672.8069 without restraints) Performing minimization step: 4737. Total energy = 4678.0480 kcal/mol (4672.2972 without restraints) Performing minimization step: 4738. Total energy = 4677.5372 kcal/mol (4671.7872 without restraints) Performing minimization step: 4739. Total energy = 4677.0271 kcal/mol (4671.2777 without restraints) Performing minimization step: 4740. Total energy = 4676.5171 kcal/mol (4670.7684 without restraints) Performing minimization step: 4741. Total energy = 4676.0078 kcal/mol (4670.2599 without restraints) Performing minimization step: 4742. Total energy = 4675.4992 kcal/mol (4669.7520 without restraints) Performing minimization step: 4743. Total energy = 4674.9908 kcal/mol (4669.2445 without restraints) Performing minimization step: 4744. Total energy = 4674.4827 kcal/mol (4668.7369 without restraints) Performing minimization step: 4745. Total energy = 4673.9747 kcal/mol (4668.2296 without restraints) Performing minimization step: 4746. Total energy = 4673.4671 kcal/mol (4667.7227 without restraints) Performing minimization step: 4747. Total energy = 4672.9600 kcal/mol (4667.2164 without restraints) Performing minimization step: 4748. Total energy = 4672.4531 kcal/mol (4666.7102 without restraints) Performing minimization step: 4749. Total energy = 4671.9468 kcal/mol (4666.2046 without restraints) Performing minimization step: 4750. Total energy = 4671.4406 kcal/mol (4665.6991 without restraints) Performing minimization step: 4751. Total energy = 4670.9351 kcal/mol (4665.1945 without restraints) Performing minimization step: 4752. Total energy = 4670.4300 kcal/mol (4664.6900 without restraints) Performing minimization step: 4753. Total energy = 4669.9250 kcal/mol (4664.1860 without restraints) Performing minimization step: 4754. Total energy = 4669.4211 kcal/mol (4663.6826 without restraints) Performing minimization step: 4755. Total energy = 4668.9171 kcal/mol (4663.1792 without restraints) Performing minimization step: 4756. Total energy = 4668.4129 kcal/mol (4662.6758 without restraints) Performing minimization step: 4757. Total energy = 4667.9095 kcal/mol (4662.1731 without restraints) Performing minimization step: 4758. Total energy = 4667.4067 kcal/mol (4661.6710 without restraints) Performing minimization step: 4759. Total energy = 4666.9038 kcal/mol (4661.1688 without restraints) Performing minimization step: 4760. Total energy = 4666.4012 kcal/mol (4660.6670 without restraints) Performing minimization step: 4761. Total energy = 4665.8992 kcal/mol (4660.1656 without restraints) Performing minimization step: 4762. Total energy = 4665.3972 kcal/mol (4659.6645 without restraints) Performing minimization step: 4763. Total energy = 4664.8967 kcal/mol (4659.1647 without restraints) Performing minimization step: 4764. Total energy = 4664.3960 kcal/mol (4658.6646 without restraints) Performing minimization step: 4765. Total energy = 4663.8960 kcal/mol (4658.1654 without restraints) Performing minimization step: 4766. Total energy = 4663.3958 kcal/mol (4657.6659 without restraints) Performing minimization step: 4767. Total energy = 4662.8958 kcal/mol (4657.1666 without restraints) Performing minimization step: 4768. Total energy = 4662.3966 kcal/mol (4656.6680 without restraints) Performing minimization step: 4769. Total energy = 4661.8978 kcal/mol (4656.1700 without restraints) Performing minimization step: 4770. Total energy = 4661.3991 kcal/mol (4655.6722 without restraints) Performing minimization step: 4771. Total energy = 4660.9007 kcal/mol (4655.1744 without restraints) Performing minimization step: 4772. Total energy = 4660.4026 kcal/mol (4654.6769 without restraints) Performing minimization step: 4773. Total energy = 4659.9055 kcal/mol (4654.1807 without restraints) Performing minimization step: 4774. Total energy = 4659.4078 kcal/mol (4653.6836 without restraints) Performing minimization step: 4775. Total energy = 4658.9103 kcal/mol (4653.1868 without restraints) Performing minimization step: 4776. Total energy = 4658.4135 kcal/mol (4652.6908 without restraints) Performing minimization step: 4777. Total energy = 4657.9171 kcal/mol (4652.1950 without restraints) Performing minimization step: 4778. Total energy = 4657.4210 kcal/mol (4651.6997 without restraints) Performing minimization step: 4779. Total energy = 4656.9258 kcal/mol (4651.2052 without restraints) Performing minimization step: 4780. Total energy = 4656.4304 kcal/mol (4650.7105 without restraints) Performing minimization step: 4781. Total energy = 4655.9357 kcal/mol (4650.2167 without restraints) Performing minimization step: 4782. Total energy = 4655.4415 kcal/mol (4649.7232 without restraints) Performing minimization step: 4783. Total energy = 4654.9476 kcal/mol (4649.2300 without restraints) Performing minimization step: 4784. Total energy = 4654.4537 kcal/mol (4648.7368 without restraints) Performing minimization step: 4785. Total energy = 4653.9603 kcal/mol (4648.2441 without restraints) Performing minimization step: 4786. Total energy = 4653.4671 kcal/mol (4647.7516 without restraints) Performing minimization step: 4787. Total energy = 4652.9746 kcal/mol (4647.2598 without restraints) Performing minimization step: 4788. Total energy = 4652.4823 kcal/mol (4646.7682 without restraints) Performing minimization step: 4789. Total energy = 4651.9900 kcal/mol (4646.2767 without restraints) Performing minimization step: 4790. Total energy = 4651.4982 kcal/mol (4645.7855 without restraints) Performing minimization step: 4791. Total energy = 4651.0070 kcal/mol (4645.2952 without restraints) Performing minimization step: 4792. Total energy = 4650.5160 kcal/mol (4644.8049 without restraints) Performing minimization step: 4793. Total energy = 4650.0251 kcal/mol (4644.3146 without restraints) Performing minimization step: 4794. Total energy = 4649.5348 kcal/mol (4643.8251 without restraints) Performing minimization step: 4795. Total energy = 4649.0450 kcal/mol (4643.3359 without restraints) Performing minimization step: 4796. Total energy = 4648.5551 kcal/mol (4642.8468 without restraints) Performing minimization step: 4797. Total energy = 4648.0657 kcal/mol (4642.3581 without restraints) Performing minimization step: 4798. Total energy = 4647.5769 kcal/mol (4641.8700 without restraints) Performing minimization step: 4799. Total energy = 4647.0880 kcal/mol (4641.3819 without restraints) Performing minimization step: 4800. Total energy = 4646.5994 kcal/mol (4640.8940 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4646.1122 kcal/mol (4640.4075 without restraints) Performing minimization step: 4802. Total energy = 4645.6247 kcal/mol (4639.9207 without restraints) Performing minimization step: 4803. Total energy = 4645.1374 kcal/mol (4639.4341 without restraints) Performing minimization step: 4804. Total energy = 4644.6509 kcal/mol (4638.9484 without restraints) Performing minimization step: 4805. Total energy = 4644.1649 kcal/mol (4638.4632 without restraints) Performing minimization step: 4806. Total energy = 4643.6789 kcal/mol (4637.9779 without restraints) Performing minimization step: 4807. Total energy = 4643.1929 kcal/mol (4637.4926 without restraints) Performing minimization step: 4808. Total energy = 4642.7073 kcal/mol (4637.0077 without restraints) Performing minimization step: 4809. Total energy = 4642.2220 kcal/mol (4636.5232 without restraints) Performing minimization step: 4810. Total energy = 4641.7371 kcal/mol (4636.0389 without restraints) Performing minimization step: 4811. Total energy = 4641.2524 kcal/mol (4635.5550 without restraints) Performing minimization step: 4812. Total energy = 4640.7681 kcal/mol (4635.0714 without restraints) Performing minimization step: 4813. Total energy = 4640.2839 kcal/mol (4634.5878 without restraints) Performing minimization step: 4814. Total energy = 4639.8000 kcal/mol (4634.1048 without restraints) Performing minimization step: 4815. Total energy = 4639.3169 kcal/mol (4633.6223 without restraints) Performing minimization step: 4816. Total energy = 4638.8339 kcal/mol (4633.1401 without restraints) Performing minimization step: 4817. Total energy = 4638.3515 kcal/mol (4632.6584 without restraints) Performing minimization step: 4818. Total energy = 4637.8694 kcal/mol (4632.1772 without restraints) Performing minimization step: 4819. Total energy = 4637.3876 kcal/mol (4631.6960 without restraints) Performing minimization step: 4820. Total energy = 4636.9063 kcal/mol (4631.2155 without restraints) Performing minimization step: 4821. Total energy = 4636.4252 kcal/mol (4630.7350 without restraints) Performing minimization step: 4822. Total energy = 4635.9443 kcal/mol (4630.2548 without restraints) Performing minimization step: 4823. Total energy = 4635.4638 kcal/mol (4629.7751 without restraints) Performing minimization step: 4824. Total energy = 4634.9837 kcal/mol (4629.2957 without restraints) Performing minimization step: 4825. Total energy = 4634.5040 kcal/mol (4628.8167 without restraints) Performing minimization step: 4826. Total energy = 4634.0244 kcal/mol (4628.3379 without restraints) Performing minimization step: 4827. Total energy = 4633.5452 kcal/mol (4627.8593 without restraints) Performing minimization step: 4828. Total energy = 4633.0666 kcal/mol (4627.3816 without restraints) Performing minimization step: 4829. Total energy = 4632.5886 kcal/mol (4626.9043 without restraints) Performing minimization step: 4830. Total energy = 4632.1109 kcal/mol (4626.4273 without restraints) Performing minimization step: 4831. Total energy = 4631.6330 kcal/mol (4625.9501 without restraints) Performing minimization step: 4832. Total energy = 4631.1559 kcal/mol (4625.4737 without restraints) Performing minimization step: 4833. Total energy = 4630.6791 kcal/mol (4624.9976 without restraints) Performing minimization step: 4834. Total energy = 4630.2024 kcal/mol (4624.5217 without restraints) Performing minimization step: 4835. Total energy = 4629.7261 kcal/mol (4624.0461 without restraints) Performing minimization step: 4836. Total energy = 4629.2501 kcal/mol (4623.5708 without restraints) Performing minimization step: 4837. Total energy = 4628.7742 kcal/mol (4623.0957 without restraints) Performing minimization step: 4838. Total energy = 4628.2991 kcal/mol (4622.6213 without restraints) Performing minimization step: 4839. Total energy = 4627.8239 kcal/mol (4622.1468 without restraints) Performing minimization step: 4840. Total energy = 4627.3494 kcal/mol (4621.6731 without restraints) Performing minimization step: 4841. Total energy = 4626.8751 kcal/mol (4621.1994 without restraints) Performing minimization step: 4842. Total energy = 4626.4012 kcal/mol (4620.7264 without restraints) Performing minimization step: 4843. Total energy = 4625.9273 kcal/mol (4620.2531 without restraints) Performing minimization step: 4844. Total energy = 4625.4535 kcal/mol (4619.7800 without restraints) Performing minimization step: 4845. Total energy = 4624.9803 kcal/mol (4619.3075 without restraints) Performing minimization step: 4846. Total energy = 4624.5075 kcal/mol (4618.8353 without restraints) Performing minimization step: 4847. Total energy = 4624.0354 kcal/mol (4618.3641 without restraints) Performing minimization step: 4848. Total energy = 4623.5635 kcal/mol (4617.8931 without restraints) Performing minimization step: 4849. Total energy = 4623.0921 kcal/mol (4617.4223 without restraints) Performing minimization step: 4850. Total energy = 4622.6210 kcal/mol (4616.9519 without restraints) Performing minimization step: 4851. Total energy = 4622.1499 kcal/mol (4616.4815 without restraints) Performing minimization step: 4852. Total energy = 4621.6792 kcal/mol (4616.0116 without restraints) Performing minimization step: 4853. Total energy = 4621.2087 kcal/mol (4615.5418 without restraints) Performing minimization step: 4854. Total energy = 4620.7386 kcal/mol (4615.0727 without restraints) Performing minimization step: 4855. Total energy = 4620.2691 kcal/mol (4614.6036 without restraints) Performing minimization step: 4856. Total energy = 4619.7995 kcal/mol (4614.1348 without restraints) Performing minimization step: 4857. Total energy = 4619.3303 kcal/mol (4613.6663 without restraints) Performing minimization step: 4858. Total energy = 4618.8612 kcal/mol (4613.1979 without restraints) Performing minimization step: 4859. Total energy = 4618.3927 kcal/mol (4612.7302 without restraints) Performing minimization step: 4860. Total energy = 4617.9246 kcal/mol (4612.2628 without restraints) Performing minimization step: 4861. Total energy = 4617.4566 kcal/mol (4611.7956 without restraints) Performing minimization step: 4862. Total energy = 4616.9892 kcal/mol (4611.3290 without restraints) Performing minimization step: 4863. Total energy = 4616.5221 kcal/mol (4610.8625 without restraints) Performing minimization step: 4864. Total energy = 4616.0551 kcal/mol (4610.3962 without restraints) Performing minimization step: 4865. Total energy = 4615.5886 kcal/mol (4609.9305 without restraints) Performing minimization step: 4866. Total energy = 4615.1223 kcal/mol (4609.4649 without restraints) Performing minimization step: 4867. Total energy = 4614.6563 kcal/mol (4608.9996 without restraints) Performing minimization step: 4868. Total energy = 4614.1906 kcal/mol (4608.5346 without restraints) Performing minimization step: 4869. Total energy = 4613.7256 kcal/mol (4608.0704 without restraints) Performing minimization step: 4870. Total energy = 4613.2607 kcal/mol (4607.6062 without restraints) Performing minimization step: 4871. Total energy = 4612.7960 kcal/mol (4607.1423 without restraints) Performing minimization step: 4872. Total energy = 4612.3321 kcal/mol (4606.6790 without restraints) Performing minimization step: 4873. Total energy = 4611.8686 kcal/mol (4606.2163 without restraints) Performing minimization step: 4874. Total energy = 4611.4051 kcal/mol (4605.7536 without restraints) Performing minimization step: 4875. Total energy = 4610.9419 kcal/mol (4605.2910 without restraints) Performing minimization step: 4876. Total energy = 4610.4787 kcal/mol (4604.8286 without restraints) Performing minimization step: 4877. Total energy = 4610.0162 kcal/mol (4604.3668 without restraints) Performing minimization step: 4878. Total energy = 4609.5537 kcal/mol (4603.9050 without restraints) Performing minimization step: 4879. Total energy = 4609.0915 kcal/mol (4603.4436 without restraints) Performing minimization step: 4880. Total energy = 4608.6298 kcal/mol (4602.9829 without restraints) Performing minimization step: 4881. Total energy = 4608.1693 kcal/mol (4602.5229 without restraints) Performing minimization step: 4882. Total energy = 4607.7084 kcal/mol (4602.0626 without restraints) Performing minimization step: 4883. Total energy = 4607.2475 kcal/mol (4601.6025 without restraints) Performing minimization step: 4884. Total energy = 4606.7870 kcal/mol (4601.1429 without restraints) Performing minimization step: 4885. Total energy = 4606.3269 kcal/mol (4600.6834 without restraints) Performing minimization step: 4886. Total energy = 4605.8667 kcal/mol (4600.2240 without restraints) Performing minimization step: 4887. Total energy = 4605.4071 kcal/mol (4599.7650 without restraints) Performing minimization step: 4888. Total energy = 4604.9477 kcal/mol (4599.3064 without restraints) Performing minimization step: 4889. Total energy = 4604.4888 kcal/mol (4598.8482 without restraints) Performing minimization step: 4890. Total energy = 4604.0304 kcal/mol (4598.3905 without restraints) Performing minimization step: 4891. Total energy = 4603.5720 kcal/mol (4597.9328 without restraints) Performing minimization step: 4892. Total energy = 4603.1138 kcal/mol (4597.4754 without restraints) Performing minimization step: 4893. Total energy = 4602.6560 kcal/mol (4597.0183 without restraints) Performing minimization step: 4894. Total energy = 4602.1985 kcal/mol (4596.5616 without restraints) Performing minimization step: 4895. Total energy = 4601.7418 kcal/mol (4596.1056 without restraints) Performing minimization step: 4896. Total energy = 4601.2850 kcal/mol (4595.6495 without restraints) Performing minimization step: 4897. Total energy = 4600.8287 kcal/mol (4595.1940 without restraints) Performing minimization step: 4898. Total energy = 4600.3730 kcal/mol (4594.7390 without restraints) Performing minimization step: 4899. Total energy = 4599.9172 kcal/mol (4594.2839 without restraints) Performing minimization step: 4900. Total energy = 4599.4620 kcal/mol (4593.8296 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4599.0075 kcal/mol (4593.3757 without restraints) Performing minimization step: 4902. Total energy = 4598.5525 kcal/mol (4592.9214 without restraints) Performing minimization step: 4903. Total energy = 4598.0979 kcal/mol (4592.4677 without restraints) Performing minimization step: 4904. Total energy = 4597.6439 kcal/mol (4592.0143 without restraints) Performing minimization step: 4905. Total energy = 4597.1900 kcal/mol (4591.5612 without restraints) Performing minimization step: 4906. Total energy = 4596.7363 kcal/mol (4591.1082 without restraints) Performing minimization step: 4907. Total energy = 4596.2834 kcal/mol (4590.6560 without restraints) Performing minimization step: 4908. Total energy = 4595.8307 kcal/mol (4590.2042 without restraints) Performing minimization step: 4909. Total energy = 4595.3784 kcal/mol (4589.7526 without restraints) Performing minimization step: 4910. Total energy = 4594.9263 kcal/mol (4589.3012 without restraints) Performing minimization step: 4911. Total energy = 4594.4742 kcal/mol (4588.8498 without restraints) Performing minimization step: 4912. Total energy = 4594.0223 kcal/mol (4588.3987 without restraints) Performing minimization step: 4913. Total energy = 4593.5713 kcal/mol (4587.9483 without restraints) Performing minimization step: 4914. Total energy = 4593.1203 kcal/mol (4587.4980 without restraints) Performing minimization step: 4915. Total energy = 4592.6695 kcal/mol (4587.0482 without restraints) Performing minimization step: 4916. Total energy = 4592.2193 kcal/mol (4586.5985 without restraints) Performing minimization step: 4917. Total energy = 4591.7690 kcal/mol (4586.1490 without restraints) Performing minimization step: 4918. Total energy = 4591.3191 kcal/mol (4585.6999 without restraints) Performing minimization step: 4919. Total energy = 4590.8698 kcal/mol (4585.2512 without restraints) Performing minimization step: 4920. Total energy = 4590.4206 kcal/mol (4584.8028 without restraints) Performing minimization step: 4921. Total energy = 4589.9717 kcal/mol (4584.3547 without restraints) Performing minimization step: 4922. Total energy = 4589.5231 kcal/mol (4583.9068 without restraints) Performing minimization step: 4923. Total energy = 4589.0746 kcal/mol (4583.4590 without restraints) Performing minimization step: 4924. Total energy = 4588.6274 kcal/mol (4583.0125 without restraints) Performing minimization step: 4925. Total energy = 4588.1795 kcal/mol (4582.5654 without restraints) Performing minimization step: 4926. Total energy = 4587.7320 kcal/mol (4582.1188 without restraints) Performing minimization step: 4927. Total energy = 4587.2854 kcal/mol (4581.6729 without restraints) Performing minimization step: 4928. Total energy = 4586.8385 kcal/mol (4581.2266 without restraints) Performing minimization step: 4929. Total energy = 4586.3919 kcal/mol (4580.7807 without restraints) Performing minimization step: 4930. Total energy = 4585.9456 kcal/mol (4580.3353 without restraints) Performing minimization step: 4931. Total energy = 4585.4998 kcal/mol (4579.8901 without restraints) Performing minimization step: 4932. Total energy = 4585.0540 kcal/mol (4579.4451 without restraints) Performing minimization step: 4933. Total energy = 4584.6085 kcal/mol (4579.0003 without restraints) Performing minimization step: 4934. Total energy = 4584.1633 kcal/mol (4578.5559 without restraints) Performing minimization step: 4935. Total energy = 4583.7184 kcal/mol (4578.1117 without restraints) Performing minimization step: 4936. Total energy = 4583.2742 kcal/mol (4577.6683 without restraints) Performing minimization step: 4937. Total energy = 4582.8301 kcal/mol (4577.2249 without restraints) Performing minimization step: 4938. Total energy = 4582.3868 kcal/mol (4576.7823 without restraints) Performing minimization step: 4939. Total energy = 4581.9432 kcal/mol (4576.3394 without restraints) Performing minimization step: 4940. Total energy = 4581.5000 kcal/mol (4575.8970 without restraints) Performing minimization step: 4941. Total energy = 4581.0572 kcal/mol (4575.4549 without restraints) Performing minimization step: 4942. Total energy = 4580.6146 kcal/mol (4575.0130 without restraints) Performing minimization step: 4943. Total energy = 4580.1723 kcal/mol (4574.5715 without restraints) Performing minimization step: 4944. Total energy = 4579.7306 kcal/mol (4574.1306 without restraints) Performing minimization step: 4945. Total energy = 4579.2892 kcal/mol (4573.6898 without restraints) Performing minimization step: 4946. Total energy = 4578.8480 kcal/mol (4573.2493 without restraints) Performing minimization step: 4947. Total energy = 4578.4069 kcal/mol (4572.8091 without restraints) Performing minimization step: 4948. Total energy = 4577.9663 kcal/mol (4572.3692 without restraints) Performing minimization step: 4949. Total energy = 4577.5259 kcal/mol (4571.9295 without restraints) Performing minimization step: 4950. Total energy = 4577.0856 kcal/mol (4571.4900 without restraints) Performing minimization step: 4951. Total energy = 4576.6454 kcal/mol (4571.0505 without restraints) Performing minimization step: 4952. Total energy = 4576.2059 kcal/mol (4570.6118 without restraints) Performing minimization step: 4953. Total energy = 4575.7665 kcal/mol (4570.1730 without restraints) Performing minimization step: 4954. Total energy = 4575.3276 kcal/mol (4569.7349 without restraints) Performing minimization step: 4955. Total energy = 4574.8888 kcal/mol (4569.2969 without restraints) Performing minimization step: 4956. Total energy = 4574.4504 kcal/mol (4568.8593 without restraints) Performing minimization step: 4957. Total energy = 4574.0123 kcal/mol (4568.4218 without restraints) Performing minimization step: 4958. Total energy = 4573.5740 kcal/mol (4567.9843 without restraints) Performing minimization step: 4959. Total energy = 4573.1362 kcal/mol (4567.5473 without restraints) Performing minimization step: 4960. Total energy = 4572.6983 kcal/mol (4567.1101 without restraints) Performing minimization step: 4961. Total energy = 4572.2613 kcal/mol (4566.6738 without restraints) Performing minimization step: 4962. Total energy = 4571.8243 kcal/mol (4566.2375 without restraints) Performing minimization step: 4963. Total energy = 4571.3879 kcal/mol (4565.8021 without restraints) Performing minimization step: 4964. Total energy = 4570.9520 kcal/mol (4565.3667 without restraints) Performing minimization step: 4965. Total energy = 4570.5160 kcal/mol (4564.9314 without restraints) Performing minimization step: 4966. Total energy = 4570.0802 kcal/mol (4564.4964 without restraints) Performing minimization step: 4967. Total energy = 4569.6451 kcal/mol (4564.0621 without restraints) Performing minimization step: 4968. Total energy = 4569.2102 kcal/mol (4563.6279 without restraints) Performing minimization step: 4969. Total energy = 4568.7758 kcal/mol (4563.1943 without restraints) Performing minimization step: 4970. Total energy = 4568.3417 kcal/mol (4562.7608 without restraints) Performing minimization step: 4971. Total energy = 4567.9075 kcal/mol (4562.3274 without restraints) Performing minimization step: 4972. Total energy = 4567.4737 kcal/mol (4561.8944 without restraints) Performing minimization step: 4973. Total energy = 4567.0402 kcal/mol (4561.4616 without restraints) Performing minimization step: 4974. Total energy = 4566.6067 kcal/mol (4561.0286 without restraints) Performing minimization step: 4975. Total energy = 4566.1741 kcal/mol (4560.5970 without restraints) Performing minimization step: 4976. Total energy = 4565.7416 kcal/mol (4560.1652 without restraints) Performing minimization step: 4977. Total energy = 4565.3100 kcal/mol (4559.7343 without restraints) Performing minimization step: 4978. Total energy = 4564.8783 kcal/mol (4559.3034 without restraints) Performing minimization step: 4979. Total energy = 4564.4471 kcal/mol (4558.8732 without restraints) Performing minimization step: 4980. Total energy = 4564.0159 kcal/mol (4558.4425 without restraints) Performing minimization step: 4981. Total energy = 4563.5845 kcal/mol (4558.0119 without restraints) Performing minimization step: 4982. Total energy = 4563.1534 kcal/mol (4557.5815 without restraints) Performing minimization step: 4983. Total energy = 4562.7228 kcal/mol (4557.1516 without restraints) Performing minimization step: 4984. Total energy = 4562.2926 kcal/mol (4556.7221 without restraints) Performing minimization step: 4985. Total energy = 4561.8629 kcal/mol (4556.2933 without restraints) Performing minimization step: 4986. Total energy = 4561.4337 kcal/mol (4555.8649 without restraints) Performing minimization step: 4987. Total energy = 4561.0041 kcal/mol (4555.4359 without restraints) Performing minimization step: 4988. Total energy = 4560.5751 kcal/mol (4555.0077 without restraints) Performing minimization step: 4989. Total energy = 4560.1458 kcal/mol (4554.5791 without restraints) Performing minimization step: 4990. Total energy = 4559.7171 kcal/mol (4554.1512 without restraints) Performing minimization step: 4991. Total energy = 4559.2894 kcal/mol (4553.7243 without restraints) Performing minimization step: 4992. Total energy = 4558.8616 kcal/mol (4553.2971 without restraints) Performing minimization step: 4993. Total energy = 4558.4339 kcal/mol (4552.8701 without restraints) Performing minimization step: 4994. Total energy = 4558.0065 kcal/mol (4552.4436 without restraints) Performing minimization step: 4995. Total energy = 4557.5794 kcal/mol (4552.0172 without restraints) Performing minimization step: 4996. Total energy = 4557.1525 kcal/mol (4551.5910 without restraints) Performing minimization step: 4997. Total energy = 4556.7262 kcal/mol (4551.1656 without restraints) Performing minimization step: 4998. Total energy = 4556.3002 kcal/mol (4550.7403 without restraints) Performing minimization step: 4999. Total energy = 4555.8743 kcal/mol (4550.3150 without restraints) Performing minimization step: 5000. Total energy = 4555.4489 kcal/mol (4549.8904 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/73e68bfe/tmp/L1_refx/L1_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to L1_refx.pdb DONE!