==> af1_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Fri Jan 23 10:55:33 2026 ATOM 1 P A A 1 -10.895 -73.808 64.559 1.00 21.87 A P ATOM 2 OP1 A A 1 -10.522 -72.444 64.123 1.00 20.74 A O ATOM 3 OP2 A A 1 -11.466 -74.574 63.429 1.00 20.70 A O ATOM 4 O5' A A 1 -9.610 -74.578 65.118 1.00 21.85 A O ATOM 5 C5' A A 1 -8.776 -74.029 66.157 1.00 22.48 A C ATOM 6 C4' A A 1 -7.720 -75.046 66.596 1.00 23.20 A C ==> boltz1_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Fri Jan 23 10:55:35 2026 ATOM 1 P A A 1 -11.108 -38.025 -29.245 1.00 24.80 P ATOM 2 OP1 A A 1 -9.980 -38.927 -28.914 1.00 24.80 O ATOM 3 OP2 A A 1 -11.358 -37.098 -28.121 1.00 24.80 O ATOM 4 O5' A A 1 -10.805 -37.215 -30.590 1.00 24.80 O ATOM 5 C5' A A 1 -10.404 -37.890 -31.799 1.00 24.80 C ATOM 6 C4' A A 1 -10.322 -36.908 -32.970 1.00 24.80 C ==> farfar1_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Fri Jan 23 10:55:37 2026 REMARK 250 Fixed atoms/residues: REMARK 250 - add OP3 at the beginning of the chain in chain: A residue # 1 ATOM 1 P A A 1 -0.017 0.003 -0.213 1.00 11.89 P ATOM 2 OP1 A A 1 -0.485 0.855 -1.333 1.00 14.35 O ATOM 3 OP2 A A 1 -0.368 -1.425 -0.163 1.00 12.68 O ATOM 4 O5' A A 1 1.563 0.073 -0.073 1.00 10.34 O ==> simrna1_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Fri Jan 23 10:55:39 2026 ATOM 1 P A A 1 60.202 25.206 176.798 1.00 0.00 P ATOM 2 OP1 A A 1 59.487 24.825 178.038 1.00 0.00 O ATOM 3 OP2 A A 1 60.156 24.088 175.831 1.00 0.00 O ATOM 4 O5' A A 1 59.539 26.514 176.166 1.00 0.00 O ATOM 5 C5' A A 1 59.235 27.673 176.970 1.00 0.00 C ATOM 6 C4' A A 1 58.186 28.556 176.294 1.00 0.00 C ==> trRosetta_minimized_rpr.pdb <== REMARK 250 Model edited with rna-tools REMARK 250 ver 3.8.13.1+39.gca2dada6.dirty REMARK 250 https://github.com/mmagnus/rna-tools REMARK 250 Fri Jan 23 10:55:41 2026 ATOM 1 P A A 1 -47.765 49.531 -28.592 1.00 30.66 P ATOM 2 OP1 A A 1 -47.020 49.047 -29.779 1.00 30.66 O ATOM 3 OP2 A A 1 -48.345 48.510 -27.694 1.00 30.66 O ATOM 4 O5' A A 1 -46.930 50.617 -27.754 1.00 30.66 O ATOM 5 C5' A A 1 -46.028 51.506 -28.438 1.00 30.66 C ATOM 6 C4' A A 1 -45.642 52.708 -27.591 1.00 30.66 C DONE!